BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14879
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRG-QCGSGKYPLISTMNTELE-----DYTVALEYDGPY 54
+ +LK+ G GG M+W++D+DDF G C G+YPLI T+ EL T LE P
Sbjct: 323 VSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQELSLPYLPSGTPELEVPKPG 382
Query: 55 ESFSPSGKYTTKEPNVVSCE-EEDGHISYHPDKADCTHYYMCEGERKHHMPCPSNLVFNP 113
+ P + + C+ + DG +P+ + + +Y C R CP+ LVF+
Sbjct: 383 QPSEPEHGPSPGQDTF--CQGKADG---LYPNPRERSSFYSCAAGRLFQQSCPTGLVFSN 437
Query: 114 KENVCDW 120
C W
Sbjct: 438 SCKCCTW 444
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 2 DWLKEDGYGGIMIWSVDMDDFRGQ-CGSGKYPLISTMNTEL 41
WLK + +GG M+W++D+DDF G C GK+PLIST+ L
Sbjct: 330 QWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKAL 370
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 2 DWLKEDGYGGIMIWSVDMDDFRGQ-CGSGKYPLISTMNTEL 41
WLK + +GG M+W++D+DDF G C GK+PLIST+ L
Sbjct: 326 QWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKAL 366
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRG-QCGSGKYPLISTMNTEL 41
+ +LK+ G GG M+W++D+DDF G C G+YPLI T+ EL
Sbjct: 323 VSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRG-QCGSGKYPLISTMNTEL 41
+ +LK+ G GG M+W++D+DDF G C G+YPLI T+ EL
Sbjct: 323 VSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRG-QCGSGKYPLISTMNTEL 41
+ +LK+ G GG M+W++D+DDF G C G+YPLI T+ EL
Sbjct: 323 VSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRG-QCGSGKYPLISTMNTEL 41
+ +LK+ G GG M+W++D+DDF G C G+YPLI T+ EL
Sbjct: 323 VSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 364
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQ-CGSGKYPLISTMNTEL 41
+ +LK GG MIWS+DMDDF G+ C G YPL+ + L
Sbjct: 321 VQFLKNLNLGGAMIWSIDMDDFTGKSCNQGPYPLVQAVKRSL 362
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 3 WLKEDGYGGIMIWSVDMDDFRGQ-CGSGKYPLISTMNTELEDYTVALEYDGPY 54
WLK++ GG ++W +DMDDF G C +PL ST+ +L ++ + + GPY
Sbjct: 327 WLKDNNLGGAVVWPLDMDDFSGSFCHQRHFPLTSTLKGDLNIHSASCK--GPY 377
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 10 GGIMIWSVDMDDFRGQCGSGKYPLISTMNTEL 41
GG+ ++ + DDFRGQC KYP++ + L
Sbjct: 389 GGVALFDLSYDDFRGQCSGDKYPILRAIKYRL 420
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 3 WLKEDGYGGIMIWSVDMDDFRGQ-CGSG-KYPLISTMNTELED 43
+LK G M+W++D+DDFRG CG +PL S + L +
Sbjct: 318 YLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAVKDVLAE 360
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 3 WLKEDGYGGIMIWSVDMDDFRGQ-CGSG-KYPLISTMNTELED 43
+LK G M+W++D+DDFRG CG +PL S + L +
Sbjct: 318 YLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAVKDVLAE 360
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 3 WLKEDGYGGIMIWSVDMDDFRGQ-CGSG-KYPLISTMNTELED 43
+LK G M+W++D+DDFRG CG +PL S + L +
Sbjct: 318 YLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAVKDVLAE 360
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 3 WLKEDGYGGIMIWSVDMDDFRGQ-CGSG-KYPLISTMNTEL 41
+LK G M+W++D+DDFRG CG +PL S + L
Sbjct: 318 YLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAVKDVL 358
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 3 WLKEDGYGGIMIWSVDMDDFRGQ-CGSG-KYPLISTMNTEL 41
+LK G M+W++D+DDFRG CG +PL S + L
Sbjct: 318 YLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAVKDVL 358
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 3 WLKEDGYGGIMIWSVDMDDFRGQ-CGSG-KYPLISTMNTEL 41
+LK G M+W++D+DDFRG CG +PL S + L
Sbjct: 318 YLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAVKDVL 358
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 3 WLKEDGYGGIMIWSVDMDDFRGQ-CGSG-KYPLISTMNTEL 41
+LK G M+W++D+DDFRG CG +PL S + L
Sbjct: 318 YLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAIKDVL 358
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 3 WLKEDGYGGIMIWSVDMDDFRGQ-CGSG-KYPLISTMNTEL 41
+LK G M+W++D+DDFRG CG +PL S + L
Sbjct: 318 YLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAIKDVL 358
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 3 WLKEDGYGGIMIWSVDMDDFRGQ-CGSG-KYPLISTMNTEL 41
+LK G M+W++D+DDFRG CG +PL S + L
Sbjct: 318 YLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAIKDVL 358
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQ-CGSG-KYPLISTMNTEL 41
+ +LK+ G M+W++D+DDF+G CG ++PL + + L
Sbjct: 317 VQYLKDRQLAGAMVWALDLDDFQGSFCGQDLRFPLTNAIKDAL 359
>pdb|2WWC|A Chain A, 3d-Structure Of The Modular Autolysin Lytc From
Streptococcus Pneumoniae In Complex With Synthetic
Peptidoglycan Ligand
Length = 468
Score = 29.3 bits (64), Expect = 0.79, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSG-KYPLISTMNTELEDYTVALEYDGPYESFSP 59
MD +K+ GY + ++S +R + K+P I + YT ALE++ PY S
Sbjct: 391 MDTMKQAGYQNVYVYS-----YRSLLQTRLKHPDILKHVNWVAAYTNALEWENPYYSGEK 445
Query: 60 SGKYTTKE 67
+YT+ E
Sbjct: 446 GWQYTSSE 453
>pdb|2WW5|A Chain A, 3d-Structure Of The Modular Autolysin Lytc From
Streptococcus Pneumoniae At 1.6 A Resolution
pdb|2WWD|A Chain A, 3d-Structure Of The Modular Autolysin Lytc From
Streptococcus Pneumoniae In Complex With Pneummococcal
Peptidoglycan Fragment
Length = 468
Score = 28.9 bits (63), Expect = 0.83, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSG-KYPLISTMNTELEDYTVALEYDGPYESFSP 59
MD +K+ GY + ++S +R + K+P I + YT ALE++ PY S
Sbjct: 391 MDTMKQAGYQNVYVYS-----YRSLLQTRLKHPDILKHVNWVAAYTNALEWENPYYSGEK 445
Query: 60 SGKYTTKE 67
+YT+ E
Sbjct: 446 GWQYTSSE 453
>pdb|1WTH|A Chain A, Crystal Structure Of Gp5-S351l Mutant And Gp27 Complex
Length = 584
Score = 28.9 bits (63), Expect = 0.94, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 29 GKYPLISTMNTE------LEDYTVALEY-----DGPYESFSPSGKYTTKE-PNVVSCEEE 76
G+YP + TM TE +D Y G YE SPSG+ T K N+
Sbjct: 385 GEYPYVHTMETESGHIQEFDDTPGQERYRLVHPTGTYEEVSPSGRRTRKTVDNLYDITNA 444
Query: 77 DGHISYHPDK 86
DG+ DK
Sbjct: 445 DGNFLVAGDK 454
>pdb|2Z6B|A Chain A, Crystal Structure Analysis Of (Gp27-Gp5)3 Conjugated With
Fe(Iii) Protoporphyrin
Length = 584
Score = 28.9 bits (63), Expect = 0.94, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 29 GKYPLISTMNTE------LEDYTVALEY-----DGPYESFSPSGKYTTKE-PNVVSCEEE 76
G+YP + TM TE +D Y G YE SPSG+ T K N+
Sbjct: 385 GEYPYVHTMETESGHIQEFDDTPGQERYRLVHPTGTYEEVSPSGRRTRKTVDNLYDITNA 444
Query: 77 DGHISYHPDK 86
DG+ DK
Sbjct: 445 DGNFLVAGDK 454
>pdb|1K28|A Chain A, The Structure Of The Bacteriophage T4 Cell-Puncturing
Device
Length = 584
Score = 28.9 bits (63), Expect = 0.96, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 29 GKYPLISTMNTE------LEDYTVALEY-----DGPYESFSPSGKYTTKE-PNVVSCEEE 76
G+YP + TM TE +D Y G YE SPSG+ T K N+
Sbjct: 385 GEYPYVHTMETESGHIQEFDDTPGQERYRLVHPTGTYEEVSPSGRRTRKTVDNLYDITNA 444
Query: 77 DGHISYHPDK 86
DG+ DK
Sbjct: 445 DGNFLVAGDK 454
>pdb|1PDL|A Chain A, Fitting Of Gp5 In The Cryoem Reconstruction Of The
Bacteriophage T4 Baseplate
pdb|1PDL|B Chain B, Fitting Of Gp5 In The Cryoem Reconstruction Of The
Bacteriophage T4 Baseplate
pdb|1PDL|C Chain C, Fitting Of Gp5 In The Cryoem Reconstruction Of The
Bacteriophage T4 Baseplate
Length = 575
Score = 28.9 bits (63), Expect = 0.97, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 29 GKYPLISTMNTE------LEDYTVALEY-----DGPYESFSPSGKYTTKE-PNVVSCEEE 76
G+YP + TM TE +D Y G YE SPSG+ T K N+
Sbjct: 385 GEYPYVHTMETESGHIQEFDDTPGQERYRLVHPTGTYEEVSPSGRRTRKTVDNLYDITNA 444
Query: 77 DGHISYHPDK 86
DG+ DK
Sbjct: 445 DGNFLVAGDK 454
>pdb|1DQC|A Chain A, Solution Structure Of Tachycitin, An Antimicrobial Protein
With Chitin-Binding Function
Length = 74
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 88 DCTHYYMCEGERKHHMPCPSNLVFNPKENVCDWPE 122
C +Y C CP L +N VCDWP
Sbjct: 23 SCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPS 57
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 50 YDGPYESFSPSGKYTTKEPNVVSCEEEDGHISYHPDKADCTHYYMCE 96
YDGP + F P+G Y V E+ DG + +C H C+
Sbjct: 520 YDGPEQRFCPAGVY-----EFVPLEQGDG-FRLQINAQNCVHCKTCD 560
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 25.8 bits (55), Expect = 7.5, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 33 LISTMNTELEDYTVALEYDGPYESFSPSGKYTTKEPNVVSCEEEDGHISYH 83
++S E E+Y EYDG Y PSG+ +E EDG+ SY
Sbjct: 172 VVSWHTDEEENYFPGAEYDGKYLVL-PSGELHIREVG-----PEDGYKSYQ 216
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 25.8 bits (55), Expect = 7.6, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 3 WLKEDGYGGIMIWSVDMDD 21
++K+ G GG+ IWS D D+
Sbjct: 506 YVKDKGLGGLFIWSGDQDN 524
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 25.8 bits (55), Expect = 7.7, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 3 WLKEDGYGGIMIWSVDMDD 21
++K+ G GG+ IWS D D+
Sbjct: 478 YVKDKGLGGLFIWSGDQDN 496
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 83 HP---DKADCTHYYMCEGERKHHMPCPSNLVFNPKENVCDWP 121
HP D C+H + +G+ CP +LV E C P
Sbjct: 578 HPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGEP 619
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,609,914
Number of Sequences: 62578
Number of extensions: 245811
Number of successful extensions: 309
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 50
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)