Query psy14879
Match_columns 138
No_of_seqs 199 out of 1465
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 23:08:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01607 CBM_14: Chitin bindin 99.5 4.9E-14 1.1E-18 84.1 3.3 47 81-127 7-53 (53)
2 smart00494 ChtBD2 Chitin-bindi 99.4 1.3E-12 2.8E-17 78.4 5.3 54 72-128 2-55 (56)
3 KOG2806|consensus 98.5 2.6E-08 5.7E-13 83.2 1.0 42 1-42 378-421 (432)
4 PF03427 CBM_19: Carbohydrate 90.4 0.32 6.9E-06 30.1 2.7 21 90-110 35-55 (61)
5 cd06543 GH18_PF-ChiA-like PF-C 74.1 1.3 2.9E-05 35.4 0.7 21 1-21 246-266 (294)
6 PF08475 Baculo_VP91_N: Viral 65.0 10 0.00022 28.5 3.6 45 82-131 106-150 (183)
7 KOG3517|consensus 53.6 13 0.00028 29.5 2.6 38 7-44 92-130 (334)
8 cd00064 FU Furin-like repeats. 51.4 14 0.0003 20.9 2.0 17 102-118 32-48 (49)
9 KOG4701|consensus 49.8 8.9 0.00019 32.4 1.2 15 4-18 280-294 (568)
10 PF12662 cEGF: Complement Clr- 35.9 27 0.00059 17.4 1.3 17 104-120 5-21 (24)
11 PF00220 Hormone_4: Neurohypop 33.4 21 0.00045 13.7 0.5 6 103-108 4-9 (9)
12 PF03286 Pox_Ag35: Pox virus A 31.0 33 0.00072 26.1 1.7 27 13-44 1-27 (200)
13 PF14468 DUF4427: Protein of u 30.6 45 0.00097 23.6 2.1 25 7-41 33-57 (132)
14 PF01826 TIL: Trypsin Inhibito 29.6 17 0.00036 21.2 -0.1 26 89-121 27-52 (55)
15 PF09064 Tme5_EGF_like: Thromb 25.4 55 0.0012 17.8 1.5 14 102-115 19-32 (34)
16 PHA02151 hypothetical protein 22.5 52 0.0011 24.5 1.3 15 7-22 93-107 (217)
17 PF04833 COBRA: COBRA-like pro 20.7 99 0.0022 23.0 2.5 34 85-118 43-82 (169)
No 1
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=99.46 E-value=4.9e-14 Score=84.11 Aligned_cols=47 Identities=34% Similarity=0.815 Sum_probs=35.9
Q ss_pred cccCCCCCCCceeecCCCcEEEeeCCCCceecCCCCccCCCCCCCCC
Q psy14879 81 SYHPDKADCTHYYMCEGERKHHMPCPSNLVFNPKENVCDWPENVETC 127 (138)
Q Consensus 81 g~~~~p~dC~~fy~C~~G~~~~~~Cp~Gl~fn~~~~~Cd~p~~v~~C 127 (138)
|+++++.+|++||+|.+|.++.+.||.|++||+..+.|+++++|..|
T Consensus 7 ~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~~~~C 53 (53)
T PF01607_consen 7 GFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSNVVQC 53 (53)
T ss_dssp EEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT-TT-
T ss_pred eeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCccCCCC
Confidence 78999999999999999999999999999999999999999983346
No 2
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=99.37 E-value=1.3e-12 Score=78.36 Aligned_cols=54 Identities=39% Similarity=0.947 Sum_probs=47.8
Q ss_pred cCCCCCCcccccCCCCCCCceeecCCCcEEEeeCCCCceecCCCCccCCCCCCCCCC
Q psy14879 72 SCEEEDGHISYHPDKADCTHYYMCEGERKHHMPCPSNLVFNPKENVCDWPENVETCL 128 (138)
Q Consensus 72 ~C~~~~~~~g~~~~p~dC~~fy~C~~G~~~~~~Cp~Gl~fn~~~~~Cd~p~~v~~C~ 128 (138)
.|.... .|+++++.+|++||+|.+|..+.+.||.|++||...+.|+|+..+. |.
T Consensus 2 ~C~~~~--~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~~-C~ 55 (56)
T smart00494 2 ECPGRG--DGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNVG-CG 55 (56)
T ss_pred cCCCCC--CccccCcccCCeeEEcCCCcEEeccCcCCCeECCCCCCcCCcccCC-CC
Confidence 465532 3799999999999999999999999999999999999999999885 85
No 3
>KOG2806|consensus
Probab=98.52 E-value=2.6e-08 Score=83.21 Aligned_cols=42 Identities=29% Similarity=0.593 Sum_probs=36.7
Q ss_pred CccccccCceeEEEEeccCCCCCCc-cCC-CCCchhHHHHHhhh
Q psy14879 1 MDWLKEDGYGGIMIWSVDMDDFRGQ-CGS-GKYPLISTMNTELE 42 (138)
Q Consensus 1 ~~~~~~~~lgG~m~w~~d~DD~~g~-c~~-~~~pl~~~i~~~l~ 42 (138)
|+||++++|||+|+|+||+|||+|. |+. ..+|++..+.+.+.
T Consensus 378 ~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~~~~~~~~~~~~~~~~ 421 (432)
T KOG2806|consen 378 ADYAKDEGLGGVAIWNIDQDDESGSLLNAALSRPQTCSICLKNH 421 (432)
T ss_pred HHHHHhcCCceEEEEeccCCCCCCccccccccccceeecccccc
Confidence 5799999999999999999999997 663 68889988887764
No 4
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=90.42 E-value=0.32 Score=30.10 Aligned_cols=21 Identities=19% Similarity=0.548 Sum_probs=19.2
Q ss_pred CceeecCCCcEEEeeCCCCce
Q psy14879 90 THYYMCEGERKHHMPCPSNLV 110 (138)
Q Consensus 90 ~~fy~C~~G~~~~~~Cp~Gl~ 110 (138)
.+|-+|.+|..+.+.||.|+.
T Consensus 35 G~faiC~~G~Wv~~~C~~Gt~ 55 (61)
T PF03427_consen 35 GSFAICDHGTWVITPCPAGTT 55 (61)
T ss_pred CCEEEcCCCcEEEeeCCCCCE
Confidence 379999999999999999986
No 5
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=74.10 E-value=1.3 Score=35.38 Aligned_cols=21 Identities=38% Similarity=0.876 Sum_probs=18.9
Q ss_pred CccccccCceeEEEEeccCCC
Q psy14879 1 MDWLKEDGYGGIMIWSVDMDD 21 (138)
Q Consensus 1 ~~~~~~~~lgG~m~w~~d~DD 21 (138)
++|++++|||++-+|+++-|-
T Consensus 246 ~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 246 VDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred HHHHHhCCCCeEeeeeccCCC
Confidence 369999999999999999875
No 6
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=64.96 E-value=10 Score=28.55 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=35.8
Q ss_pred ccCCCCCCCceeecCCCcEEEeeCCCCceecCCCCccCCCCCCCCCCCCC
Q psy14879 82 YHPDKADCTHYYMCEGERKHHMPCPSNLVFNPKENVCDWPENVETCLHHT 131 (138)
Q Consensus 82 ~~~~p~dC~~fy~C~~G~~~~~~Cp~Gl~fn~~~~~Cd~p~~v~~C~~~~ 131 (138)
.-+++.|=++|..=.+.....+.||.+..||.. .|.-.. -|...+
T Consensus 106 V~~~~~d~~kF~~~~DDGwv~~~CP~~~~FD~~--~Cvp~p---~C~~~~ 150 (183)
T PF08475_consen 106 VRPHPNDPTKFIARGDDGWVDMDCPENERFDGN--KCVPIP---PCDNKP 150 (183)
T ss_pred eecCCCCCceEEEEecCCcEEEeCCCccccccc--ceeecC---ccCCCC
Confidence 346788999999887667999999999999988 888642 385543
No 7
>KOG3517|consensus
Probab=53.56 E-value=13 Score=29.53 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=28.2
Q ss_pred cCceeEEEEecc-CCCCCCccCCCCCchhHHHHHhhhcc
Q psy14879 7 DGYGGIMIWSVD-MDDFRGQCGSGKYPLISTMNTELEDY 44 (138)
Q Consensus 7 ~~lgG~m~w~~d-~DD~~g~c~~~~~pl~~~i~~~l~~~ 44 (138)
++=-||++|+|- -==-.|+|....-|-.+.|.+.|++.
T Consensus 92 q~DPGIFAWEIRDRLlsdgiCDk~NvPSVSSISRILRNK 130 (334)
T KOG3517|consen 92 QRDPGIFAWEIRDRLLSDGICDKYNVPSVSSISRILRNK 130 (334)
T ss_pred ccCCceeeehhhhhhhhcccccccCCcchHHHHHHHHhh
Confidence 344699999993 22223589888889999999999764
No 8
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=51.39 E-value=14 Score=20.94 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=12.8
Q ss_pred EeeCCCCceecCCCCcc
Q psy14879 102 HMPCPSNLVFNPKENVC 118 (138)
Q Consensus 102 ~~~Cp~Gl~fn~~~~~C 118 (138)
+..||.+.+++.....|
T Consensus 32 v~~C~~~~~~~~~~~~C 48 (49)
T cd00064 32 VSECPEGTYADTEGGVC 48 (49)
T ss_pred cccCCCCceecCcCCcC
Confidence 34799999998666655
No 9
>KOG4701|consensus
Probab=49.80 E-value=8.9 Score=32.36 Aligned_cols=15 Identities=20% Similarity=0.760 Sum_probs=12.5
Q ss_pred ccccCceeEEEEecc
Q psy14879 4 LKEDGYGGIMIWSVD 18 (138)
Q Consensus 4 ~~~~~lgG~m~w~~d 18 (138)
+++..|||||.|+..
T Consensus 280 a~S~~fGGv~LWd~s 294 (568)
T KOG4701|consen 280 ANSTLFGGVTLWDTS 294 (568)
T ss_pred hhccccccEEEeech
Confidence 467789999999983
No 10
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=35.91 E-value=27 Score=17.36 Aligned_cols=17 Identities=24% Similarity=0.732 Sum_probs=13.4
Q ss_pred eCCCCceecCCCCccCC
Q psy14879 104 PCPSNLVFNPKENVCDW 120 (138)
Q Consensus 104 ~Cp~Gl~fn~~~~~Cd~ 120 (138)
.|++|+..++....|.-
T Consensus 5 ~C~~Gy~l~~d~~~C~D 21 (24)
T PF12662_consen 5 SCPPGYQLSPDGRSCED 21 (24)
T ss_pred eCCCCCcCCCCCCcccc
Confidence 58999888887777754
No 11
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=33.44 E-value=21 Score=13.72 Aligned_cols=6 Identities=33% Similarity=0.839 Sum_probs=3.1
Q ss_pred eeCCCC
Q psy14879 103 MPCPSN 108 (138)
Q Consensus 103 ~~Cp~G 108 (138)
.+||-|
T Consensus 4 ~nCP~G 9 (9)
T PF00220_consen 4 RNCPIG 9 (9)
T ss_pred ccCCCC
Confidence 456644
No 12
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=30.99 E-value=33 Score=26.12 Aligned_cols=27 Identities=26% Similarity=0.677 Sum_probs=21.3
Q ss_pred EEEeccCCCCCCccCCCCCchhHHHHHhhhcc
Q psy14879 13 MIWSVDMDDFRGQCGSGKYPLISTMNTELEDY 44 (138)
Q Consensus 13 m~w~~d~DD~~g~c~~~~~pl~~~i~~~l~~~ 44 (138)
|.|+|.+ |.||. .|-=|..|++.|...
T Consensus 1 MsWs~~~----~~~~~-~f~tl~eiR~hlrs~ 27 (200)
T PF03286_consen 1 MSWSINL----GNGGS-NFKTLEEIRAHLRST 27 (200)
T ss_pred CceeEec----CCCCc-cceeHHHHHHHHhhh
Confidence 8999997 35665 788899999999653
No 13
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=30.65 E-value=45 Score=23.59 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=19.6
Q ss_pred cCceeEEEEeccCCCCCCccCCCCCchhHHHHHhh
Q psy14879 7 DGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTEL 41 (138)
Q Consensus 7 ~~lgG~m~w~~d~DD~~g~c~~~~~pl~~~i~~~l 41 (138)
.++||+.+|-.|. ..++.+++-+.-
T Consensus 33 ~e~G~~wvWi~DN----------~~~~vRALl~~g 57 (132)
T PF14468_consen 33 REFGNAWVWIHDN----------QSEVVRALLQAG 57 (132)
T ss_pred hhcCceEEEEecC----------cCHHHHHHHHcC
Confidence 4679999999986 578888776653
No 14
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=29.64 E-value=17 Score=21.16 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=17.7
Q ss_pred CCceeecCCCcEEEeeCCCCceecCCCCccCCC
Q psy14879 89 CTHYYMCEGERKHHMPCPSNLVFNPKENVCDWP 121 (138)
Q Consensus 89 C~~fy~C~~G~~~~~~Cp~Gl~fn~~~~~Cd~p 121 (138)
|. ..|..| =.|+.|++++.. ..|..+
T Consensus 27 C~--~~C~~g----C~C~~G~v~~~~-~~CV~~ 52 (55)
T PF01826_consen 27 CS--EPCVEG----CFCPPGYVRNDN-GRCVPP 52 (55)
T ss_dssp CS--SS-ESE----EEETTTEEEETT-SEEEEG
T ss_pred cC--CCCCcc----CCCCCCeeEcCC-CCEEcH
Confidence 55 345554 459999999988 777654
No 15
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=25.41 E-value=55 Score=17.79 Aligned_cols=14 Identities=14% Similarity=0.527 Sum_probs=10.7
Q ss_pred EeeCCCCceecCCC
Q psy14879 102 HMPCPSNLVFNPKE 115 (138)
Q Consensus 102 ~~~Cp~Gl~fn~~~ 115 (138)
.=.||+|++.++..
T Consensus 19 ~C~CPeGyIlde~~ 32 (34)
T PF09064_consen 19 QCFCPEGYILDEGS 32 (34)
T ss_pred ceeCCCceEecCCc
Confidence 44699999988764
No 16
>PHA02151 hypothetical protein
Probab=22.50 E-value=52 Score=24.46 Aligned_cols=15 Identities=47% Similarity=0.993 Sum_probs=11.7
Q ss_pred cCceeEEEEeccCCCC
Q psy14879 7 DGYGGIMIWSVDMDDF 22 (138)
Q Consensus 7 ~~lgG~m~w~~d~DD~ 22 (138)
-||-|+|-| ||.||.
T Consensus 93 gg~~gv~dw-ldnd~i 107 (217)
T PHA02151 93 GGLTGVMDW-LDNDDI 107 (217)
T ss_pred ccceeeeee-ecCCce
Confidence 578899999 577775
No 17
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) []. The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].
Probab=20.67 E-value=99 Score=22.96 Aligned_cols=34 Identities=26% Similarity=0.674 Sum_probs=21.5
Q ss_pred CCCCCCcee------ecCCCcEEEeeCCCCceecCCCCcc
Q psy14879 85 DKADCTHYY------MCEGERKHHMPCPSNLVFNPKENVC 118 (138)
Q Consensus 85 ~p~dC~~fy------~C~~G~~~~~~Cp~Gl~fn~~~~~C 118 (138)
+..||++|| +|=.-.+...+=|.|.-+|.....|
T Consensus 43 dqgdCs~~~~~~~~ph~C~k~P~IvDLpp~~~~n~qi~nC 82 (169)
T PF04833_consen 43 DQGDCSKFYKDGDFPHCCKKRPTIVDLPPGTPYNQQIGNC 82 (169)
T ss_pred cCCcccccccCCCCCcccCCCCEEEeCCCCCCCccccccc
Confidence 456777777 4444455566667888888775544
Done!