RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14879
(138 letters)
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 126 bits (319), Expect = 9e-36
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQ-CGSGKYPLISTMNTELEDYTVALEYDGPYESFSP 59
+ +LK+ G GG M+W++D+DDF G C G+YPLI T+ EL +
Sbjct: 323 VSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQELSLPYLPSGTPELEVPKPG 382
Query: 60 SGKYTTKEPNVVSCEEEDGHIS-YHPDKADCTHYYMCEGERKHHMPCPSNLVFNPKENVC 118
P+ G +P+ + + +Y C R CP+ LVF+ C
Sbjct: 383 QPSEPEHGPSPGQDTFCQGKADGLYPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCC 442
Query: 119 DW 120
W
Sbjct: 443 TW 444
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural
plasticity, functional versatility, immune system; 1.31A
{Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Length = 377
Score = 74.7 bits (184), Expect = 6e-17
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQ-CGSGKYPLISTMNTELEDYTVALEYDGPY 54
WLK++ GG ++W +DMDDF G C +PL ST+ +L ++ + + GPY
Sbjct: 325 AQWLKDNNLGGAVVWPLDMDDFSGSFCHQRHFPLTSTLKGDLNIHSASCK--GPY 377
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 74.1 bits (182), Expect = 1e-16
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTEL 41
+ + GG+ ++ + DDFRGQC KYP++ + L
Sbjct: 380 AAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILRAIKYRL 420
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus
tridentatus} SCOP: g.31.1.1
Length = 74
Score = 65.2 bits (159), Expect = 2e-15
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 82 YHPDKADCTHYYMCEGERKHHMPCPSNLVFNPKENVCDWPENV 124
+ + C +Y C CP L +N VCDWP
Sbjct: 17 PNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKA 59
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 68.1 bits (167), Expect = 1e-14
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQ-CGSGKYPLISTMNTEL 41
+ +LK GG MIWS+DMDDF G+ C G YPL+ + L
Sbjct: 321 VQFLKNLNLGGAMIWSIDMDDFTGKSCNQGPYPLVQAVKRSL 362
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 67.8 bits (166), Expect = 1e-14
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQ-CGSGKYPLISTMNTELEDYTVALEYDGPYESFSP 59
WLK + +GG M+W++D+DDF G C GK+PLIST+ L + +
Sbjct: 325 AQWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALGL------QSASCTAPAQ 378
Query: 60 SGKYTTKEPNVVSCEE 75
+ T P
Sbjct: 379 PIEPITAAPGSHHHHH 394
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG
MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB:
2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A*
2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A*
2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Length = 361
Score = 66.5 bits (163), Expect = 4e-14
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQ-CGSG-KYPLISTMNTELED 43
+LK G M+W++D+DDFRG CG +PL S + L +
Sbjct: 316 ARYLKNRQLAGAMVWALDLDDFRGTFCGQNLTFPLTSAVKDVLAE 360
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 58.8 bits (143), Expect = 2e-11
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRG--QCGSGKYPLISTMNTELE 42
+ + K+ G G W V DD G + S + + ++
Sbjct: 311 VRYAKQRGLLGYFSWHVGADDNSGLSRAASQAWDATTATTRTIQ 354
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 58.5 bits (142), Expect = 3e-11
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTELED 43
++KE+ Y G+MIW + D LI+ + E+ +
Sbjct: 265 CKFIKENDYAGVMIWQLFQDAHNDNY---DLKLINVVGREMME 304
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB:
3alg_A*
Length = 353
Score = 55.0 bits (133), Expect = 5e-10
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTELE 42
++++K G G W V D G + E++
Sbjct: 313 VNYVKGRGLLGYFAWHVAGDQNWGLSRTA-SQTWGVSFQEMK 353
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 54.5 bits (131), Expect = 7e-10
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTELEDYTVALEYDGPYESFSPS 60
++K+ G GG+ IWS D D+ + L + ++ D T P+ S
Sbjct: 504 GRYVKDKGLGGLFIWSGDQDNGIL-TNAAHEGLKRRIKNKVIDMT-------PFYLDSDE 555
Query: 61 GKYTTKEPNVVSCEE 75
T EP CE
Sbjct: 556 ELPTYTEPAEPQCEA 570
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 51.5 bits (124), Expect = 8e-09
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTEL 41
+++ ++G GG M W D G L+ T+ L
Sbjct: 329 AEYITKNGMGGGMWWESSSDKT------GNESLVGTVVNGL 363
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 50.8 bits (122), Expect = 1e-08
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTEL 41
++K G GG M W D G LI+T+ L
Sbjct: 370 SGYIKSLGLGGAMWWDSSSDKT------GSDSLITTVVNAL 404
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 50.9 bits (122), Expect = 2e-08
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 8/41 (19%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTEL 41
D++K G G M W DD L + L
Sbjct: 384 ADYIKAKGLAGAMFWEYGADDQNQ--------LARQLAESL 416
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 50.8 bits (122), Expect = 2e-08
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTEL 41
+ + K G GG M W D G LI T + +
Sbjct: 347 VSYAKGLGLGGSMFWEASADKT------GSDSLIGTALSSM 381
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 49.1 bits (117), Expect = 6e-08
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTELEDYTVALEYDGPYESFSPS 60
++K+ GG+M W + D+ G L++ ++ A +YD
Sbjct: 389 AKYIKQQQLGGVMFWHLGQDNRNG-------DLLAALDRYFN----AADYDDSQLDMGTG 437
Query: 61 GKYTTKEPNVVSCEEEDGHISYHPDK 86
+YT P + ++
Sbjct: 438 LRYTGVGPGNLPIMTAPAYVPGTTYA 463
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 47.8 bits (114), Expect = 2e-07
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 8/41 (19%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTEL 41
++K G GG M W + D + L + + +L
Sbjct: 387 TAYIKSKGLGGAMFWELSGDRNKT--------LQNKLKADL 419
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 47.4 bits (113), Expect = 2e-07
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQC 26
M ++E I W + + +
Sbjct: 292 MQIVREYRLQAIGAWQLTLAEGHHHH 317
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A
{Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A*
3n18_A* 3n1a_A*
Length = 333
Score = 47.3 bits (112), Expect = 2e-07
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 7 DGYGGIMIWSVDMDDFRGQCGSGKY-PLISTMNTE 40
+ G+M WS++ D S Y ++ +
Sbjct: 298 PAFRGLMSWSINWDAKNNFEFSNNYRTYFDGLSLQ 332
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 46.0 bits (109), Expect = 7e-07
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTEL 41
++ + GG+ W +D D+ ++++MN L
Sbjct: 502 GKYVLDKQLGGLFSWEIDADNG---------DILNSMNASL 533
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 45.9 bits (109), Expect = 8e-07
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTEL 41
D++ G GG M W + D L+ M+ +
Sbjct: 389 TDYIVSKGLGGGMWWELSGDRN--------GELVGAMSDKF 421
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 45.7 bits (108), Expect = 8e-07
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTELEDYTVALEYDGPYE 55
++ K G G+ W +D D+ +++ M+ + V +
Sbjct: 535 GNYAKSLGLAGLFSWEIDADNG---------DILNAMHEGMAGGVVTPPNRRSHH 580
>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT
barrel, hydrolase; 1.50A {Pyrococcus furiosus} PDB:
3a4w_A* 3a4x_A* 3afb_A
Length = 311
Score = 33.1 bits (75), Expect = 0.020
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTELEDYTVALEYDGPYESFSPS 60
+DW + G + WSVD D PL N ++ ++ S
Sbjct: 244 VDWAIQHKIGSLAFWSVDRD--HPGPTGEVSPLHRGTNDPDWAFSHVFVKFMEAFGYTFS 301
>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 1.75A {Lactococcus lactis
subsp}
Length = 321
Score = 31.1 bits (70), Expect = 0.094
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 5 KEDGYGGIMIWSVDMDDFRGQCGS 28
+ G+M WSV+ D G
Sbjct: 273 SGNEIKGLMTWSVNWDAGTNSNGE 296
>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A
{Elizabethkingia meningoseptica} SCOP: c.1.8.5
Length = 289
Score = 30.1 bits (67), Expect = 0.21
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 3 WLKEDGYGGIMIWSVDMDDFRGQCGSGKYPLISTMNTELEDYTVALEYDGPY 54
+ GYGG MI+++D + SG+ P + + EL Y L Y
Sbjct: 237 NIVTKGYGGHMIFAMDPNRSNFT--SGQLPALKLIAKEL--YGDELVYSNTP 284
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
unknown function, hydrolase, PSI-2, protein structure
initiative; 1.50A {Streptomyces coelicolor}
Length = 302
Score = 29.5 bits (66), Expect = 0.32
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 5 KEDGYGGIMIWSVDMDDFRG 24
G M WS + D G
Sbjct: 261 TYPDLRGAMTWSTNWDATAG 280
>3mu7_A XAIP-II, xylanase and alpha-amylase inhibitor protein; TIM barell,
amylase/xylanase inhibitory protein, hydrolase I; 1.29A
{Scadoxus multiflorus} PDB: 3o9n_A 3oih_A* 3hu7_A
3m7s_A* 3d5h_A*
Length = 273
Score = 28.8 bits (64), Expect = 0.55
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 9 YGGIMIWSVDMDDFRG 24
+GGIM+W D
Sbjct: 248 FGGIMLWDSYWDTVSQ 263
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 28.6 bits (64), Expect = 0.58
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 21 DFRGQCGSGKYPLISTMNTELEDYTVALEY 50
D RG G T L+D A +
Sbjct: 62 DLRGHEGYASMRQSVTRAQNLDDIKAAYDQ 91
>2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea brasiliensis}
SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A* 1kr1_A*
1kqy_A* 1kqz_A*
Length = 273
Score = 28.5 bits (63), Expect = 0.62
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 9 YGGIMIWSVDMDDFRG 24
YGG+M+WS DD G
Sbjct: 249 YGGVMLWSKFYDDKNG 264
>1cnv_A Concanavalin B; plant chitinase, chitin binding protein, SEED
protein; 1.65A {Canavalia ensiformis} SCOP: c.1.8.5
Length = 299
Score = 28.6 bits (63), Expect = 0.69
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 9 YGGIMIWSVDMDDFRG 24
Y GI +W+ D G
Sbjct: 259 YAGIALWNRQADKETG 274
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.78
Identities = 7/57 (12%), Positives = 14/57 (24%), Gaps = 20/57 (35%)
Query: 41 LEDYTVALEYDGPYESFSPSGKYTTKEPNVVSCEEEDG----HISYHPDKADCTHYY 93
++ Y + +D + P D HI +H +
Sbjct: 450 VDHYNIPKTFD--SDDLIP--------------PYLDQYFYSHIGHHLKNIEHPERM 490
>1ta3_A XIP-1, xylanase inhibitor protein I; beta alpha barrel (XIP-I),
beta alpha barrel (xylanase), HYD inhibitor-hydrolase
complex; HET: NAG; 1.70A {Triticum aestivum} SCOP:
c.1.8.5 PDB: 1om0_A* 1te1_A*
Length = 274
Score = 27.6 bits (61), Expect = 1.3
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 9 YGGIMIWSVDMDDFRG 24
YGGIM+W D
Sbjct: 250 YGGIMLWDRYFDKQTN 265
>2gsj_A Protein PPL-2; mimosoideae, chimerolectin, endochitinase, glycosyl
hydrolase family 18, equilibrium sedimentation, X-RAY;
1.73A {Parkia platycephala}
Length = 271
Score = 27.3 bits (60), Expect = 1.5
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 9 YGGIMIWSVDMDDFRG 24
YGG+M+W D
Sbjct: 247 YGGVMLWDRFNDLKTK 262
>2uy2_A Endochitinase; carbohydrate metabolism, polysaccharide degradation,
glycopr chitin-binding, chitin degradation, CAZY,
hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2uy3_A*
2uy4_A* 2uy5_A*
Length = 294
Score = 27.3 bits (60), Expect = 1.6
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 9 YGGIMIWSVDMDDFRGQCGSG 29
+GGI +W G
Sbjct: 258 FGGIALWDASQAFSNELNGEP 278
>2xtk_A CHIA1, class III chitinase CHIA1; hydrolase, GH18; HET: AZM; 2.00A
{Aspergillus fumigatus} PDB: 2xuc_A 2xvp_A 2xvn_A*
Length = 310
Score = 27.1 bits (59), Expect = 2.3
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 9 YGGIMIWSVDMDDFRGQCGSG 29
+GGIM+W + G+
Sbjct: 279 FGGIMLWEATASENNQIDGAP 299
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 2.6
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 15/84 (17%)
Query: 53 PYESFSPSGKYTTKEPNVVSCEEEDGHISYHPDKADCTHYYMCEGE--RKHHMPCPSNLV 110
P+ S ++++ + ++S++ Y +G R +V
Sbjct: 426 PF--HSH---LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 111 ----FNPKENVCDWPENVETCLHH 130
P W + H
Sbjct: 481 DCIIRLP----VKWETTTQFKATH 500
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase
(glucosidase); 1.90A {Streptomyces plicatus} SCOP:
c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A
1c93_A
Length = 271
Score = 25.7 bits (56), Expect = 5.3
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 1 MDWLKEDGYGGIMIWSVD 18
++GYG + +++D
Sbjct: 230 ARRTVDEGYGVYLTYNLD 247
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome,
secreted, hydrolase; 2.70A {Homo sapiens}
Length = 393
Score = 25.8 bits (56), Expect = 6.6
Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 1 MDWLKEDGYGGIMIWSVDMDD 21
++ +E G G + IW +
Sbjct: 367 LELARELGVG-VSIWELGQGL 386
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP:
c.1.8.5
Length = 290
Score = 25.4 bits (55), Expect = 8.4
Identities = 3/31 (9%), Positives = 10/31 (32%)
Query: 1 MDWLKEDGYGGIMIWSVDMDDFRGQCGSGKY 31
++ G+ W+ + + G +
Sbjct: 247 TRLVQTFSLPGVFFWNANDSVIPKRDGDKPF 277
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.452
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,359,619
Number of extensions: 129370
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 47
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (23.8 bits)