BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1488
(630 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 449 bits (1155), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/472 (45%), Positives = 319/472 (67%), Gaps = 14/472 (2%)
Query: 146 HHALRRSVSQPLGINELSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEV 205
H++ + L INEL + + VV AEA+WDHV M+ +ELGF+AGDVIEV
Sbjct: 8 HYSHPGGGGEQLAINEL----------ISDGSVVCAEALWDHVTMDDQELGFKAGDVIEV 57
Query: 206 LDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLS 265
+D +R+WWWG + GWFP++FVRLRV+Q++ +D + G++ + + S
Sbjct: 58 MDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAED---GGAEAQSS 114
Query: 266 NDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQ 325
DQ+R+ V+ E+++TERD++K L D+ EGY+ +CR+R DMFS EQ++TIFGN+EDI Q
Sbjct: 115 KDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQ 174
Query: 326 SSFLEDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSK 385
+F++ LE + + + P+ S +G FL+H++ F++YSEYCN+HP A L L + + Y
Sbjct: 175 KAFVKALEQRFNRERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVY 234
Query: 386 FFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAMRD 445
FFEACRL++ +I+I LDG+LLTPVQ+ICKYPLQLAELLKYT H D+ + AL AM++
Sbjct: 235 FFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKN 294
Query: 446 VAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMW-TNTIT 504
VA LINERKRR+E+++K+A WQ +E WEGEDL+ SS+LI+ GE+ RVT +
Sbjct: 295 VAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRM 354
Query: 505 LFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDK 564
FLFDHQL+YCK+D+L+R+ YK RL++D ++++L DGKD L V++++A ++H
Sbjct: 355 FFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGAT 414
Query: 565 DKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAAR 616
L C R E K RWL AF +ER V+ D+E G ++ A ++A++
Sbjct: 415 GDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITELQRKQAMLNASK 466
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/443 (47%), Positives = 298/443 (67%), Gaps = 14/443 (3%)
Query: 154 SQPLGINELSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDW 213
+ L INEL + + VV AEA+WDHV + +ELGF+AGDVIEV D +R+W
Sbjct: 53 GEQLAINEL----------ISDGSVVCAEALWDHVTXDDQELGFKAGDVIEVXDATNREW 102
Query: 214 WWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRV 273
WWG + GWFP++FVRLRV+Q++ +D + G++ + + S DQ R+ V
Sbjct: 103 WWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAED---GGAEAQSSKDQXRTNV 159
Query: 274 VRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLE 333
+ E+++TERD++K L D+ EGY+ +CR+R D FS EQ++TIFGN+EDI Q +F++ LE
Sbjct: 160 INEILSTERDYIKHLRDICEGYVRQCRKRADXFSEEQLRTIFGNIEDIYRCQKAFVKALE 219
Query: 334 TKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKFFEACRLM 393
+ + + P+ S +G FL+H++ F++YSEYCN+HP A L L + + Y FFEACRL+
Sbjct: 220 QRFNRERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLL 279
Query: 394 RGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINER 453
+ I+I LDG+LLTPVQ+ICKYPLQLAELLKYT H D+ + AL A ++VA LINER
Sbjct: 280 QKXIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAXKNVAQLINER 339
Query: 454 KRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMW-TNTITLFLFDHQL 512
KRR+E+++K+A WQ +E WEGEDL+ SS+LI+ GE+ RVT + FLFDHQL
Sbjct: 340 KRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRXFFLFDHQL 399
Query: 513 VYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCC 572
+YCK+D+L+R+ YK RL+ D ++++L DGKD L V++++A ++H L C
Sbjct: 400 IYCKKDLLRRDVLYYKGRLDXDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCT 459
Query: 573 RSLEDKARWLAAFQQERALVEQD 595
R E K RWL AF +ER V+ D
Sbjct: 460 RKPEQKQRWLKAFAREREQVQLD 482
>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|C Chain C, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 402
Score = 357 bits (915), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/393 (44%), Positives = 262/393 (66%), Gaps = 3/393 (0%)
Query: 232 LRVSQEDTVEDCLAALASGGSKTLRRRTSIS--LLSNDQVRSRVVRELINTERDFVKVLH 289
L V+QED VE+ + + +G + L + DQ+R+ V+ E+++TER ++K L
Sbjct: 2 LWVNQEDGVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLK 61
Query: 290 DVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGET 349
D+ EGYL +CR+R DMFS EQ++ IFGN+EDI FQ F+ DLE + + D P+ S IG
Sbjct: 62 DICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPC 121
Query: 350 FLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPV 409
FL+H+ GF +YSEYCN+H A L +L + + Y FFEACRL++ +I+I +DG+LLTPV
Sbjct: 122 FLEHQDGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPV 181
Query: 410 QRICKYPLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQR 469
Q+ICKYPLQLAELLKYT DH DY + AL MR+V INERKRR+E+++K+A WQ
Sbjct: 182 QKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQAS 241
Query: 470 VEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTI-TLFLFDHQLVYCKRDILKRNTHVYK 528
V WEG+D+++ SS+LI+ GE+ + N FLFDHQ+V CK+D+++R+ YK
Sbjct: 242 VLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYK 301
Query: 529 ARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQE 588
R+++D ++I++ DG+D V++++A K+H + ++ LF + LE+K RWL AF++E
Sbjct: 302 GRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREE 361
Query: 589 RALVEQDREDGLEFAPAAKELARMSAARCHSSR 621
R +V++D + G E + K A M+ + +
Sbjct: 362 RKMVQEDEKIGFEISENQKRQAAMTVRKASKQK 394
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 10/88 (11%)
Query: 155 QPLGINELSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 214
+ L INEL + + VV AEA+WDHV M+ +ELGF+AGDVIEV+D +R+WW
Sbjct: 23 EQLAINEL----------ISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWW 72
Query: 215 WGTRGEASGWFPSAFVRLRVSQEDTVED 242
WG + GWFP++FVRLRV+Q++ +D
Sbjct: 73 WGRVADGEGWFPASFVRLRVNQDEPADD 100
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 132/285 (46%), Gaps = 17/285 (5%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 242
++D+ A +EL F G +I VL+ D DWW G G FPS +V+L + + +
Sbjct: 7 GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQW 66
Query: 243 CLAA-LASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR 301
C L + T R+R + ELI TE ++V L V+E + +
Sbjct: 67 CSDLHLLDMLTPTERKRQG------------YIHELIVTEENYVNDLQLVTEIF-QKPLT 113
Query: 302 RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLET--KLDWDAPYKSCIGETFLKHKSGFRM 359
+++ + +++ IF N ++++ L+ L K+ + IG+ +
Sbjct: 114 ESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQP 173
Query: 360 YSEYCNSHPMAIATLQELY-QHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQ 418
Y +C+ A +Q+ + ++ +F + + +PL ++L P+QR+ +YPL
Sbjct: 174 YIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLI 233
Query: 419 LAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKL 463
+ +L+ T +HPD+ + ALE ++ +NE R E+ ++L
Sbjct: 234 IKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRL 278
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 134/275 (48%), Gaps = 21/275 (7%)
Query: 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 329
R +RE+ TE + L + + ++ +R P+ ++TIF N+E++ + + FL
Sbjct: 26 RCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFSVHTHFL 82
Query: 330 EDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNS------HPMAIATLQELYQHNNY 383
++L+ L P + + + F+K+K F +Y YC+ H +AT +E Q
Sbjct: 83 KELKDALA--GPGATTLYQVFIKYKERFLVYGRYCSQVESASKHLDQVATAREDVQMK-- 138
Query: 384 SKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAM 443
E C L L+ P+QR+ KY L L EL+K+T+ D + + AL+AM
Sbjct: 139 ---LEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-DATEKENLRLALDAM 194
Query: 444 RDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTI 503
RD+A +NE KR E+L ++ +Q +E + ++ + ++ V T+
Sbjct: 195 RDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLANYGRPKIDGELKITSVERRSKTDRY 254
Query: 504 TLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQI 538
FL D L+ CKR + +++ KA +N+ + Q+
Sbjct: 255 A-FLLDKALLICKR---RGDSYDLKASVNLHSFQV 285
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 237
+V AEAVWDHV M EL F+AGDVI+VLD ++DWWWG + GWFP++FVRL V+QE
Sbjct: 10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQE 69
Query: 238 DTVED 242
D VE+
Sbjct: 70 DEVEE 74
>pdb|1FOE|A Chain A, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|C Chain C, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|E Chain E, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|G Chain G, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
Length = 377
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 20/247 (8%)
Query: 267 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQS 326
D++R +V+ EL+ TER +VK L+ + E YL ++ + +++ +FGNL + + FQ
Sbjct: 10 DKLR-KVICELLETERTYVKDLNCLXERYLKPLQKET-FLTQDELDVLFGNLTEXVEFQV 67
Query: 327 SFLEDLE------------TKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATL 374
FL+ LE K+D +G +FL + F++YS +C SH L
Sbjct: 68 EFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKVPKVL 127
Query: 375 QELYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYV 434
+ + F +A + R L+ YL+ P+QR+ KYPL L EL T + ++
Sbjct: 128 VKAKTDTAFKAFLDA-QNPRQQHSSTLESYLIKPIQRVLKYPLLLRELFALTDAESEEHY 186
Query: 435 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV 494
+ A++ VA INE ++ E A + Q + GE + + G+++
Sbjct: 187 HLDVAIKTXNKVASHINEXQKIHEEFG--AVFDQLIAEQTGE---KKEVADLSXGDLLLH 241
Query: 495 TSGMWTN 501
TS +W N
Sbjct: 242 TSVIWLN 248
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 127/285 (44%), Gaps = 17/285 (5%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 242
A++D+ A +EL F G +I V++ D DWW G +G FPS +V++ + + +
Sbjct: 23 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSDPSQQW 82
Query: 243 CLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRR 302
C + + R+ R + ELI TE ++ L V E + + R
Sbjct: 83 CADLQTLDTMQPIERK-----------RQGYIHELIQTEERYMADLQLVVEVF--QKRMA 129
Query: 303 NDMFSPE-QIQTIFGNLEDILAFQSSFLEDLET--KLDWDAPYKSCIGETFLKHKSGFRM 359
F E ++ IF N ++++ + L+ L K + IG+ S +
Sbjct: 130 ESGFLTEGEMALIFVNWKELIMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELSHMQA 189
Query: 360 YSEYCNSHPMAIATLQELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQ 418
Y +C+ A LQ+ + ++ +F + +PL +LL P+QRI +YPL
Sbjct: 190 YIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLL 249
Query: 419 LAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKL 463
+ +L+ T H D+ + ALE ++ +NE R E+ ++L
Sbjct: 250 IRSILENTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRL 294
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 151/324 (46%), Gaps = 41/324 (12%)
Query: 234 VSQEDTVEDCLAALASGGSKT---LRRRTSISL---LSNDQVRSRVVRELINTERDFVKV 287
V +++ + DC+ + G + L R +S+ ++ R +RE+ TE +
Sbjct: 156 VEEDEDLYDCVENEEAEGDEIYEDLMRSEPVSMPPKMTEYDKRCCCLREIQQTEEKYTDT 215
Query: 288 LHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIG 347
L + + +L +R P+ I+ IF N+ED+L + FL++++ L P + +
Sbjct: 216 LGSIQQHFLKPLQR---FLKPQDIEIIFINIEDLLRVHTHFLKEMKEALG--TPGAANLY 270
Query: 348 ETFLKHKSGFRMYSEYCNS------HPMAIATLQELYQHNNYSKFFEACRLMRGLIEIPL 401
+ F+K+K F +Y YC+ H +A +E Q E C L
Sbjct: 271 QVFIKYKERFLVYGRYCSQVESASKHLDRVAAAREDVQMK-----LEECSQRANNGRFTL 325
Query: 402 DGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLE 461
L+ P+QR+ KY L L EL+K+T+ + + + AL+AMRD+A +NE KR E+L
Sbjct: 326 RDLLMVPMQRVLKYHLLLQELVKHTQ-EAMEKENLRLALDAMRDLAQCVNEVKRDNETLR 384
Query: 462 KLAAWQQRVEGWEGEDLIETSSQLIHQGEV-----IRVTSGMWTNTIT--LFLFDHQLVY 514
++ +Q +E + L H G +++TS + + FL D L+
Sbjct: 385 QITNFQLSIENLD--------QSLAHYGRPKIDGELKITSVERRSKMDRYAFLLDKALLI 436
Query: 515 CKRDILKRNTHVYKARLNIDTSQI 538
CKR + +++ K +N+ + Q+
Sbjct: 437 CKR---RGDSYDLKDFVNLHSFQV 457
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 133/282 (47%), Gaps = 35/282 (12%)
Query: 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 329
R +RE+ TE + L + + +L +R P+ I+ IF N+ED+L + FL
Sbjct: 7 RCCCLREIQQTEEKYTDTLGSIQQHFLKPLQR---FLKPQDIEIIFINIEDLLRVHTHFL 63
Query: 330 EDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNS------HPMAIATLQELYQHNNY 383
++++ L P + + + F+K+K F +Y YC+ H +A +E Q
Sbjct: 64 KEMKEALG--TPGAANLYQVFIKYKERFLVYGRYCSQVESASKHLDRVAAAREDVQMK-- 119
Query: 384 SKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAM 443
E C L L+ P+QR+ KY L L EL+K+T+ + + + AL+AM
Sbjct: 120 ---LEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-EAMEKENLRLALDAM 175
Query: 444 RDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGE-----VIRVTSGM 498
RD+A +NE KR E+L ++ +Q +E + L H G +++TS
Sbjct: 176 RDLAQCVNEVKRDNETLRQITNFQLSIENLD--------QSLAHYGRPKIDGELKITSVE 227
Query: 499 WTNTIT--LFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQI 538
+ + FL D L+ CKR + +++ K +N+ + Q+
Sbjct: 228 RRSKMDRYAFLLDKALLICKR---RGDSYDLKDFVNLHSFQV 266
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 24/194 (12%)
Query: 269 VRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQT--------IFGNLED 320
+R V+ EL++TER +V+ L V EGY AE ++ I T +FGN+E+
Sbjct: 11 LRRHVMNELLDTERAYVEELLCVLEGYAAE---MDNPLMAHLISTGLQNKKNILFGNMEE 67
Query: 321 ILAFQSS-FLEDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQ 379
I F + FL +LE+ +D P +G FL+ F++Y +YC + P + + L++
Sbjct: 68 IYHFHNRIFLRELESCID--CP--ELVGRCFLERMEEFQIYEKYCQNKPRS----ESLWR 119
Query: 380 HNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVK-ITE 438
+ FF+ C+ + ++ LD YLL PVQRI KY L L E+LKY+K H + + + E
Sbjct: 120 QCSDCPFFQECQ-KKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSK--HCEGAEDLQE 176
Query: 439 ALEAMRDVAMLINE 452
AL ++ + +N+
Sbjct: 177 ALSSILGILKAVND 190
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 24/194 (12%)
Query: 269 VRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQT--------IFGNLED 320
+R V+ EL++TER +V+ L V EGY AE ++ I T +FGN+E+
Sbjct: 11 LRRHVMNELLDTERAYVEELLCVLEGYAAE---MDNPLMAHLISTGLQNKKNILFGNMEE 67
Query: 321 ILAFQSS-FLEDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQ 379
I F + FL +LE+ +D P +G FL+ F++Y +YC + P + + L++
Sbjct: 68 IYHFHNRIFLRELESCID--CP--ELVGRCFLERMEEFQIYEKYCQNKPRS----ESLWR 119
Query: 380 HNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVK-ITE 438
+ FF+ C+ + ++ LD YLL PVQRI KY L L E+LKY+K H + + + E
Sbjct: 120 QCSDCPFFQECQ-KKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSK--HCEGAEDLQE 176
Query: 439 ALEAMRDVAMLINE 452
AL ++ + +N+
Sbjct: 177 ALSSILGILKAVND 190
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 24/194 (12%)
Query: 269 VRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQT--------IFGNLED 320
+R V+ EL++TER +V+ L V EGY AE ++ I T +FGN+E+
Sbjct: 11 LRRHVMNELLDTERAYVEELLCVLEGYAAE---MDNPLMAHLISTGLQNKKNILFGNMEE 67
Query: 321 ILAFQSS-FLEDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQ 379
I F + FL +LE+ +D P +G FL+ F++Y +YC + P + + L++
Sbjct: 68 IYHFHNRIFLRELESCID--CP--ELVGRCFLERMEEFQIYEKYCQNKPRS----ESLWR 119
Query: 380 HNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVK-ITE 438
+ FF+ C+ + ++ LD YLL PVQRI KY L L E+LKY+K H + + + E
Sbjct: 120 QCSDCPFFQECQ-KKLDHKLSLDSYLLKPVQRITKYQLLLKEMLKYSK--HCEGAEDLQE 176
Query: 439 ALEAMRDVAMLINE 452
AL ++ + +N+
Sbjct: 177 ALSSILGILKAVND 190
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 103/194 (53%), Gaps = 24/194 (12%)
Query: 269 VRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQT--------IFGNLED 320
+R V EL++TER +V+ L V EGY AE ++ I T +FGN E+
Sbjct: 11 LRRHVXNELLDTERAYVEELLCVLEGYAAE---XDNPLXAHLISTGLQNKKNILFGNXEE 67
Query: 321 ILAFQSS-FLEDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQ 379
I F + FL +LE+ +D P +G FL+ F++Y +YC + P + + L++
Sbjct: 68 IYHFHNRIFLRELESCID--CP--ELVGRCFLERXEEFQIYEKYCQNKPRS----ESLWR 119
Query: 380 HNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVK-ITE 438
+ FF+ C+ + ++ LD YLL PVQRI KY L L E LKY+K H + + + E
Sbjct: 120 QCSDCPFFQECQ-KKLDHKLSLDSYLLKPVQRITKYQLLLKEXLKYSK--HCEGAEDLQE 176
Query: 439 ALEAMRDVAMLINE 452
AL ++ + +N+
Sbjct: 177 ALSSILGILKAVND 190
>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology
Domain
Length = 208
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 17/192 (8%)
Query: 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 329
R +RE+ TE + L + + ++ +R P+ ++TIF N+E++ + + FL
Sbjct: 28 RCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFSVHTHFL 84
Query: 330 EDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNS------HPMAIATLQELYQHNNY 383
++L+ L P + + + F+K+K F +Y YC+ H +AT +E Q
Sbjct: 85 KELKDALA--GPGATTLYQVFIKYKERFLVYGRYCSQVESASKHLDQVATAREDVQMK-- 140
Query: 384 SKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAM 443
E C L L+ P+QR+ KY L L EL+K+T+ D + + AL+AM
Sbjct: 141 ---LEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-DATEKENLRLALDAM 196
Query: 444 RDVAMLINERKR 455
RD+A +NE KR
Sbjct: 197 RDLAQCVNEVKR 208
>pdb|2NZ8|B Chain B, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
Length = 313
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 38/318 (11%)
Query: 273 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQ---TIFGNLEDILAFQSS-F 328
++ ELI TE+ +V+ L + + YL E + P + IFGN+++I F ++ F
Sbjct: 15 IMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIF 74
Query: 329 LEDLET--KLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKF 386
L++LE +L D +G F+ F+MY YC + P + + E + +
Sbjct: 75 LKELEKYEQLPED------VGHCFVTWADKFQMYVTYCKNKPDSTQLILE-----HAGSY 123
Query: 387 FEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAMRDV 446
F+ + GL + YL+ PVQRI KY L L ELL + + I + LE M V
Sbjct: 124 FDEIQQRHGLAN-SISSYLIKPVQRITKYQLLLKELLTCCEEGKGE---IKDGLEVMLSV 179
Query: 447 AMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLF 506
N+ L L + + +E +GE +++ S Q+ +IR G + LF
Sbjct: 180 PKRANDAMH----LSMLEGFDENIES-QGELILQESFQVWDPKTLIR--KGRERH---LF 229
Query: 507 LFDHQLVYCK--RDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDK 564
LF+ LV+ K +D R+ ++YK++L + +G + V
Sbjct: 230 LFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRT-----PTS 284
Query: 565 DKWLLFCCRSLEDKARWL 582
D ++ S+E+K W+
Sbjct: 285 DNKIVLKASSIENKQDWI 302
>pdb|1NTY|A Chain A, Crystal Structure Of The First DhPH DOMAIN OF TRIO TO 1.7
A
Length = 311
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 38/318 (11%)
Query: 273 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQ---TIFGNLEDILAFQSS-F 328
++ ELI TE+ +V+ L + + YL E + P + IFGN+++I F ++ F
Sbjct: 13 IMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIF 72
Query: 329 LEDLET--KLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKF 386
L++LE +L D +G F+ F+MY YC + P + + E + +
Sbjct: 73 LKELEKYEQLPED------VGHCFVTWADKFQMYVTYCKNKPDSTQLILE-----HAGSY 121
Query: 387 FEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAMRDV 446
F+ + GL + YL+ PVQRI KY L L ELL + + I + LE M V
Sbjct: 122 FDEIQQRHGLAN-SISSYLIKPVQRITKYQLLLKELLTCCEEGKGE---IKDGLEVMLSV 177
Query: 447 AMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLF 506
N+ L L + + +E +GE +++ S Q+ +IR G + LF
Sbjct: 178 PKRANDAMH----LSMLEGFDENIES-QGELILQESFQVWDPKTLIR--KGRERH---LF 227
Query: 507 LFDHQLVYCK--RDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDK 564
LF+ LV+ K +D R+ ++YK++L + +G + V
Sbjct: 228 LFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRT-----PTS 282
Query: 565 DKWLLFCCRSLEDKARWL 582
D ++ S+E+K W+
Sbjct: 283 DNKIVLKASSIENKQDWI 300
>pdb|2RGN|B Chain B, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|E Chain E, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 354
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 28/206 (13%)
Query: 273 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQ----TIFGNLEDILAF-QSS 327
V+ EL+ TE+ +V L + EGY+A + PE ++ +FGN++ I + +
Sbjct: 16 VLSELVETEKMYVDDLGQIVEGYMATMAAQG---VPESLRGRDRIVFGNIQQIYEWHRDY 72
Query: 328 FLEDLETKL---DWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYS 384
FL++L+ L DW + + F+KH+ MY YC + P + + E
Sbjct: 73 FLQELQRCLKDPDW-------LAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFG-----D 120
Query: 385 KFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAMR 444
+FE R G + L+ L+ PVQRI KY L L + LKY D + +A+E M
Sbjct: 121 SYFEELRQQLGH-RLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVM- 178
Query: 445 DVAMLINERKRRMESLEKLAAWQQRV 470
+ +R M +L +L ++ ++
Sbjct: 179 ---CFVPKRCNDMMTLGRLRGFEGKL 201
>pdb|2KR9|A Chain A, Kalirin Dh1 Nmr Structure
Length = 190
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 18/157 (11%)
Query: 273 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSP---EQIQTIFGNLEDILAFQSS-F 328
++ EL+ TE+ +V+ LH+ E YL E + P + IFGN+++I F ++ F
Sbjct: 16 IMAELLQTEKAYVRDLHECLETYLWEMTSGVEEIPPGILNKEHIIFGNIQEIYDFHNNIF 75
Query: 329 LEDLET--KLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKF 386
L++LE +L D +G F+ F+MY YC + P + Q + +H F
Sbjct: 76 LKELEKYEQLPED------VGHCFVTWADKFQMYVTYCKNKP---DSNQLILEHA--GTF 124
Query: 387 FEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELL 423
F+ + GL + YL+ PVQR+ KY L L ELL
Sbjct: 125 FDEIQQRHGLAN-SISSYLIKPVQRVTKYQLLLKELL 160
>pdb|1KI1|B Chain B, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|D Chain D, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 352
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 101/212 (47%), Gaps = 4/212 (1%)
Query: 263 LLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDIL 322
L ++ R + ELI TE ++V L V+E + + +++ + +++ IF N ++++
Sbjct: 3 LTPTERKRQGYIHELIVTEENYVNDLQLVTEIF-QKPLMESELLTEKEVAMIFVNWKELI 61
Query: 323 AFQSSFLEDLET--KLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELY-Q 379
L+ L K+ + IG+ + Y +C+ A +Q+ +
Sbjct: 62 MCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQPYIRFCSRQLNGAALIQQKTDE 121
Query: 380 HNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEA 439
++ +F + + +PL ++L P+QR+ +YPL + +L+ T +HPD+ + A
Sbjct: 122 APDFKEFVKRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHA 181
Query: 440 LEAMRDVAMLINERKRRMESLEKLAAWQQRVE 471
LE ++ +NE R E+ ++L Q V+
Sbjct: 182 LEKAEELCSQVNEGVREKENSDRLEWIQAHVQ 213
>pdb|3QBV|B Chain B, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|D Chain D, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 351
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 121/263 (46%), Gaps = 17/263 (6%)
Query: 263 LLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDIL 322
L ++ R + ELI TE ++V L V+E + + +++ + +++ IF N ++++
Sbjct: 3 LTPTERKRQGYIHELIVTEENYVNDLQLVTEIF-QKPLMESELLTEKEVAMIFVNWKELI 61
Query: 323 AFQSSFLEDLET--KLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELY-Q 379
L+ L K+ + IG+ + Y +C+ A +Q+ +
Sbjct: 62 MCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPHMQPYIRFCSRQLNGAALIQQKTDE 121
Query: 380 HNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEA 439
++ +F + + +PL ++L P+QR+ +YPL + +L+ T +HPD+ + A
Sbjct: 122 APDFKEFVKRLAMDPRCKGMPLSEFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHA 181
Query: 440 LEAMRDVAMLINERKRRMESLEKLAAWQQRV--EGWEGEDLIETSS-------QLIHQGE 490
LE ++ +NE R E+ ++L Q V EG E L+ S + +H G+
Sbjct: 182 LEKAEELCSQVNEGVREKENSDRLEWIQAHVQCEGL-SEQLVFNSVTNCLGPRKFLHSGK 240
Query: 491 VIRVTSGMWTNTITLFLFDHQLV 513
+ + S + FLF+ L+
Sbjct: 241 LYKAKSN---KELYGFLFNDFLL 260
>pdb|1BY1|A Chain A, Dbl Homology Domain From Beta-Pix
Length = 209
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 10/196 (5%)
Query: 266 NDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQ 325
N + V++ ++ TE ++ K L V YL + ++ S I + GNLE+I +FQ
Sbjct: 10 NKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQT-SEKLSSANISYLMGNLEEICSFQ 68
Query: 326 SSFLEDLE--TKLDWDAPYKSCIGETFLKHKSGFR-MYSEYCNSHPMAIATLQELYQHNN 382
++ LE TKL + +G FL + +Y YC +HP A+ L E
Sbjct: 69 QMLVQSLEECTKL---PEAQQRVGGCFLNLMPQMKTLYLTYCANHPSAVNVLTE--HSEE 123
Query: 383 YSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEA 442
+F E I + G L P R+ KYP L EL ++ + H D I +++ A
Sbjct: 124 LGEFMETKGASSPGILVLTTG-LSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSMAA 182
Query: 443 MRDVAMLINERKRRME 458
++++ E ++R E
Sbjct: 183 FKNLSAQCQEVRKRKE 198
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 119/256 (46%), Gaps = 30/256 (11%)
Query: 264 LSNDQV-RSRVVRELINTERDFVK---VLHDVSEGYLAECRRRNDMFSP-EQIQTIFGNL 318
L QV R V+ EL+ TE V+ VLHD+ +AEC +F P E++Q IF +L
Sbjct: 174 LPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSL 228
Query: 319 EDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF------RMYSEYCNSHPMAIA 372
++++ S FL+ L + IG+ L G ++ S +C+ A+
Sbjct: 229 DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALE 288
Query: 373 TLQELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHP 431
L+ + + + F + + L + T +QR+ KYPL L + + T+ +
Sbjct: 289 QLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE-EPT 347
Query: 432 DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE-----------GWEGEDLIE 480
+ K+ A E R++ +N+ R ME L +L +Q+R++ E ++L
Sbjct: 348 EREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDI 407
Query: 481 TSSQLIHQGEVI-RVT 495
T +L+H+G + RVT
Sbjct: 408 TKKKLVHEGPLTWRVT 423
>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
Leukemia-associated Rhogef
pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
Length = 385
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 112/254 (44%), Gaps = 45/254 (17%)
Query: 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 329
R V+ EL TER V+ L + + + R + SP +++ IF NLEDIL
Sbjct: 25 RQEVINELFYTERAHVRTLKVLDQVFYQRVSREG-ILSPSELRKIFSNLEDILQLHIGLN 83
Query: 330 EDL----------------ETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIAT 373
E + E L W S GE LKH + +C++ P A+
Sbjct: 84 EQMKAVRKRNETSVIDQIGEDLLTW----FSGPGEEKLKHAAA-----TFCSNQPFALEM 134
Query: 374 LQELYQHNNYSKFF----EACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTD 429
++ + ++ + F E+ L R L L + T +QR+ KYPL L + KYT+
Sbjct: 135 IKSRQKKDSRFQTFVQDAESNPLCRRL---QLKDIIPTQMQRLTKYPLLLDNIAKYTEWP 191
Query: 430 HPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW-----------EGEDL 478
+ K+ +A + R + +N+ + E+ ++L +Q+R++ E +L
Sbjct: 192 -TEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNL 250
Query: 479 IETSSQLIHQGEVI 492
T ++IH+G ++
Sbjct: 251 DLTKRKMIHEGPLV 264
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 119/256 (46%), Gaps = 30/256 (11%)
Query: 264 LSNDQV-RSRVVRELINTERDFVK---VLHDVSEGYLAECRRRNDMFSP-EQIQTIFGNL 318
L QV R V+ EL+ TE V+ VLHD+ +AEC +F P E++Q IF +L
Sbjct: 61 LPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSL 115
Query: 319 EDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF------RMYSEYCNSHPMAIA 372
++++ S FL+ L + IG+ L G ++ S +C+ A+
Sbjct: 116 DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALE 175
Query: 373 TLQELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHP 431
L+ + + + F + + L + T +QR+ KYPL L + + T+ +
Sbjct: 176 QLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE-EPT 234
Query: 432 DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE-----------GWEGEDLIE 480
+ K+ A E R++ +N+ R ME L +L +Q+R++ E ++L
Sbjct: 235 EREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDI 294
Query: 481 TSSQLIHQGEVI-RVT 495
T +L+H+G + RVT
Sbjct: 295 TKKKLVHEGPLTWRVT 310
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 119/256 (46%), Gaps = 30/256 (11%)
Query: 264 LSNDQV-RSRVVRELINTERDFVK---VLHDVSEGYLAECRRRNDMFSP-EQIQTIFGNL 318
L QV R V+ EL+ TE V+ VLHD+ +AEC +F P E++Q IF +L
Sbjct: 19 LPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSL 73
Query: 319 EDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF------RMYSEYCNSHPMAIA 372
++++ S FL+ L + IG+ L G ++ S +C+ A+
Sbjct: 74 DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALE 133
Query: 373 TLQELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHP 431
L+ + + + F + + L + T +QR+ KYPL L + + T+ +
Sbjct: 134 QLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE-EPT 192
Query: 432 DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE-----------GWEGEDLIE 480
+ K+ A E R++ +N+ R ME L +L +Q+R++ E ++L
Sbjct: 193 EREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDI 252
Query: 481 TSSQLIHQGEVI-RVT 495
T +L+H+G + RVT
Sbjct: 253 TKKKLVHEGPLTWRVT 268
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 119/256 (46%), Gaps = 30/256 (11%)
Query: 264 LSNDQV-RSRVVRELINTERDFVK---VLHDVSEGYLAECRRRNDMFSP-EQIQTIFGNL 318
L QV R V+ EL+ TE V+ VLHD+ +AEC +F P E++Q IF +L
Sbjct: 21 LPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSL 75
Query: 319 EDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF------RMYSEYCNSHPMAIA 372
++++ S FL+ L + IG+ L G ++ S +C+ A+
Sbjct: 76 DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALE 135
Query: 373 TLQELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHP 431
L+ + + + F + + L + T +QR+ KYPL L + + T+ +
Sbjct: 136 QLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE-EPT 194
Query: 432 DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE-----------GWEGEDLIE 480
+ K+ A E R++ +N+ R ME L +L +Q+R++ E ++L
Sbjct: 195 EREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDI 254
Query: 481 TSSQLIHQGEVI-RVT 495
T +L+H+G + RVT
Sbjct: 255 TKKKLVHEGPLTWRVT 270
>pdb|2Z0Q|A Chain A, Crystal Structure Of Dh-Ph Domain Of Rhogef3(Xpln)
Length = 352
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 127/298 (42%), Gaps = 26/298 (8%)
Query: 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 329
R + EL E D ++ L + Y + + + + +++ IFG L+ ++ L
Sbjct: 20 RQEAIFELSQGEEDLIEDLKLAKKAY-HDPXLKLSIXTEQELNQIFGTLDSLIPLHEELL 78
Query: 330 EDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKFFEA 389
L D + +G + Y YC++ A A L Q + F +
Sbjct: 79 SQLRDVRKPDGSTEH-VGPILVGWLPCLSSYDSYCSNQVAAKALLDHKKQDHRVQDFLQR 137
Query: 390 CRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAMRDVAML 449
C ++ L +L P R+ KYPL L E+L++T D+PD + EA+ ++ +
Sbjct: 138 CLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAE 197
Query: 450 INERKRRMESLEKLAAWQQR---VEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLF 506
IN + E +++R +E + + LI++S L GE ++ G+ + +F
Sbjct: 198 INTKTGESEC----RYYKERLLYLEEGQKDSLIDSSRVLCCHGE-LKNNRGV---KLHVF 249
Query: 507 LFDHQLVYCKRDILKRNTH-------VYKARLNIDTSQIINLPDGKDPHLGVTVRHAI 557
LF LV I + TH +Y+ + + + +L DG + LG ++R A
Sbjct: 250 LFQEVLV-----ITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDG-EVRLGGSLRGAF 301
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 23/259 (8%)
Query: 270 RSRVVRELINTERDFVKVLHDVSEGY---LAECRRRNDMFSPEQIQTIFGNLEDILAFQS 326
R + ELI TE ++ L V E + +AE + + ++ IF N ++++ +
Sbjct: 28 RQGYIHELIQTEERYMADLQLVVEVFQKRMAE----SGFLTEGEMALIFVNWKELIMSNT 83
Query: 327 SFLEDLET--KLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELY-QHNNY 383
L+ L K + IG+ S + Y +C+ A LQ+ + ++
Sbjct: 84 KLLKALRVRKKTGGEKMPVQMIGDILAAELSHMQAYIRFCSCQLNGAALLQQKTDEDTDF 143
Query: 384 SKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAM 443
+F + +PL +LL P+QRI +YPL + +L+ T H D+ + ALE
Sbjct: 144 KEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERA 203
Query: 444 RDVAMLINERKRRMESLEKLAAWQQRV--EGWEGEDLIETS-------SQLIHQGEVIRV 494
++ +NE R E+ ++L Q V EG E LI S +L+H G++ +
Sbjct: 204 EELCSQVNEGVREKENSDRLEWIQAHVQCEGL-AEQLIFNSLTNCLGPRKLLHSGKLYKT 262
Query: 495 TSGMWTNTITLFLFDHQLV 513
S + FLF+ L+
Sbjct: 263 KSN---KELHGFLFNDFLL 278
>pdb|3KZ1|A Chain A, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|B Chain B, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 383
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 113/238 (47%), Gaps = 20/238 (8%)
Query: 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 329
R V+ EL TE ++ L + + ++ N + E++ +F NL +++ +S+
Sbjct: 27 RQEVINELFVTEASHLRTLRVLDLIFYQRMKKEN-LMPREELARLFPNLPELIEIHNSWC 85
Query: 330 EDLETKLDWDAPYKSCIGETFLKHKSG------FRMYSEYCNSHPMAIATLQ-ELYQHNN 382
E ++ KL + P I + L G ++ +++C+ +A+ ++ + + +
Sbjct: 86 EAMK-KLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESR 144
Query: 383 YSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEA 442
+ F + + L +++ +QR+ KYPL L ++K+T+ ++ K+ A +
Sbjct: 145 FQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQ 204
Query: 443 MRDVAMLINERKRRMESLEKLAAWQQRVEGW-----------EGEDLIETSSQLIHQG 489
R++ +NE ++ E+ +L +Q+R++ E + L T+ ++IH+G
Sbjct: 205 CREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEG 262
>pdb|3T06|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|E Chain E, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 418
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 113/238 (47%), Gaps = 20/238 (8%)
Query: 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 329
R V+ EL TE ++ L + + ++ N + E++ +F NL +++ +S+
Sbjct: 64 RQEVINELFVTEASHLRTLRVLDLIFYQRMKKEN-LMPREELARLFPNLPELIEIHNSWC 122
Query: 330 EDLETKLDWDAPYKSCIGETFLKHKSG------FRMYSEYCNSHPMAIATLQ-ELYQHNN 382
E ++ KL + P I + L G ++ +++C+ +A+ ++ + + +
Sbjct: 123 EAMK-KLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESR 181
Query: 383 YSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEA 442
+ F + + L +++ +QR+ KYPL L ++K+T+ ++ K+ A +
Sbjct: 182 FQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQ 241
Query: 443 MRDVAMLINERKRRMESLEKLAAWQQRVEGW-----------EGEDLIETSSQLIHQG 489
R++ +NE ++ E+ +L +Q+R++ E + L T+ ++IH+G
Sbjct: 242 CREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEG 299
>pdb|1XCG|A Chain A, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|E Chain E, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
Length = 368
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 113/238 (47%), Gaps = 20/238 (8%)
Query: 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 329
R V+ EL TE ++ L + + ++ N + E++ +F NL +++ +S+
Sbjct: 22 RQEVINELFVTEASHLRTLRVLDLIFYQRMKKEN-LMPREELARLFPNLPELIEIHNSWC 80
Query: 330 EDLETKLDWDAPYKSCIGETFLKHKSG------FRMYSEYCNSHPMAIATLQ-ELYQHNN 382
E ++ KL + P I + L G ++ +++C+ +A+ ++ + + +
Sbjct: 81 EAMK-KLREEGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIKTKQRKESR 139
Query: 383 YSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEA 442
+ F + + L +++ +QR+ KYPL L ++K+T+ ++ K+ A +
Sbjct: 140 FQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQ 199
Query: 443 MRDVAMLINERKRRMESLEKLAAWQQRVEGW-----------EGEDLIETSSQLIHQG 489
R++ +NE ++ E+ +L +Q+R++ E + L T+ ++IH+G
Sbjct: 200 CREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTRKMIHEG 257
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human
Neuroepithelial Cell- Transforming Gene 1 Protein
Length = 231
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 2/193 (1%)
Query: 262 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 321
SL + + R + E+ E+D ++ L + Y + + + S E++ IFG+L+
Sbjct: 25 SLTTREIRRQEAIYEMSRGEQDLIEDLKLARKAY-HDPMLKLSIMSEEELTHIFGDLDSY 83
Query: 322 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHN 381
+ L + D + IG + Y YC++ A A L + Q
Sbjct: 84 IPLHEDLLTRIGEATKPDGTVEQ-IGHILVSWLPRLNAYRGYCSNQLAAKALLDQKKQDP 142
Query: 382 NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALE 441
F + C ++ L +L P R+ KYPL L E+LK+T +HPD + +A+
Sbjct: 143 RVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILKHTPKEHPDVQLLEDAIL 202
Query: 442 AMRDVAMLINERK 454
++ V IN +K
Sbjct: 203 IIQGVLSDINLKK 215
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/364 (21%), Positives = 152/364 (41%), Gaps = 61/364 (16%)
Query: 265 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAF 324
S +Q +V+ + R +++ L+ + + + + +FS ++ IF + DI
Sbjct: 196 SGEQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHEL 255
Query: 325 QSSFL---EDLETKLDWDAPYKSCIGETF--LKHKSGFRMYSEYCNS------HPMAIAT 373
L ED D +P+ +G F L + F Y Y H ++
Sbjct: 256 SVKLLGHIEDTVEMTDEGSPH-PLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQ 314
Query: 374 LQE----LYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTD 429
L + LY + F EA + + L LL PV C + +L + L+ D
Sbjct: 315 LSKPGAALYLQSIGEGFKEAVQYV-------LPRLLLAPVYH-CLHYFELLKQLEEKSED 366
Query: 430 HPDYVKITEALEAMRDVAMLINE------RKRRME----------------SLEKLAAWQ 467
D + +A+ A+ +V + + KRR+ +++K+ Q
Sbjct: 367 QEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQ 426
Query: 468 QRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD-----ILKR 522
+ ++GWEG+D+ + ++ I +G + RV + + +FLFD ++ CK + +
Sbjct: 427 KNIDGWEGKDIGQCCNEFIMEGTLTRVGAKHERH---IFLFDGLMICCKSNHGQPRLPGA 483
Query: 523 NTHVYKARLNIDTSQI-INLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARW 581
+ Y+ + ++ IN D + + +HA +I D++ ++F +S E+K W
Sbjct: 484 SNAEYRLKEKFFMRKVQINDKDDTNEY-----KHAFEIILKDENS-VIFSAKSAEEKNNW 537
Query: 582 LAAF 585
+AA
Sbjct: 538 MAAL 541
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/362 (20%), Positives = 151/362 (41%), Gaps = 61/362 (16%)
Query: 267 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQS 326
+Q +V+ + R +++ L+ + + + + +FS ++ IF + DI
Sbjct: 1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSV 60
Query: 327 SFL---EDLETKLDWDAPYKSCIGETF--LKHKSGFRMYSEYCNS------HPMAIATLQ 375
L ED D +P+ +G F L + F Y Y H ++ L
Sbjct: 61 KLLGHIEDTVEMTDEGSPH-PLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 119
Query: 376 E----LYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHP 431
+ LY + F EA + + L LL PV C + +L + L+ D
Sbjct: 120 KPGAALYLQSIGEGFKEAVQYV-------LPRLLLAPVYH-CLHYFELLKQLEEKSEDQE 171
Query: 432 DYVKITEALEAMRDVAMLINE------RKRRME----------------SLEKLAAWQQR 469
D + +A+ A+ +V + + KRR+ +++K+ Q+
Sbjct: 172 DKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKN 231
Query: 470 VEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD-----ILKRNT 524
++GWEG+D+ + ++ I +G + RV + + +FLFD ++ CK + + +
Sbjct: 232 IDGWEGKDIGQCCNEFIMEGTLTRVGAKHERH---IFLFDGLMICCKSNHGQPRLPGASN 288
Query: 525 HVYKARLNIDTSQI-INLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLA 583
Y+ + ++ IN D + + +HA +I D++ ++F +S E+K W+A
Sbjct: 289 AEYRLKEKFFMRKVQINDKDDTNEY-----KHAFEIILKDENS-VIFSAKSAEEKNNWMA 342
Query: 584 AF 585
A
Sbjct: 343 AL 344
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/362 (20%), Positives = 151/362 (41%), Gaps = 61/362 (16%)
Query: 267 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQS 326
+Q +V+ + R +++ L+ + + + + +FS ++ IF + DI
Sbjct: 1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSV 60
Query: 327 SFL---EDLETKLDWDAPYKSCIGETF--LKHKSGFRMYSEYCNS------HPMAIATLQ 375
L ED D +P+ +G F L + F Y Y H ++ L
Sbjct: 61 KLLGHIEDTVEMTDEGSPH-PLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 119
Query: 376 E----LYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHP 431
+ LY + F EA + + L LL PV C + +L + L+ D
Sbjct: 120 KPGAALYLQSIGEGFKEAVQYV-------LPRLLLAPVYH-CLHYFELLKQLEEKSEDQE 171
Query: 432 DYVKITEALEAMRDVAMLINE------RKRRME----------------SLEKLAAWQQR 469
D + +A+ A+ +V + + KRR+ +++K+ Q+
Sbjct: 172 DKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKN 231
Query: 470 VEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD-----ILKRNT 524
++GWEG+D+ + ++ I +G + RV + + +FLFD ++ CK + + +
Sbjct: 232 IDGWEGKDIGQCCNEFIMEGTLTRVGAKHERH---IFLFDGLMICCKSNHGQPRLPGASN 288
Query: 525 HVYKARLNIDTSQI-INLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLA 583
Y+ + ++ IN D + + +HA +I D++ ++F +S E+K W+A
Sbjct: 289 AEYRLKEKFFMRKVQINDKDDTNEY-----KHAFEIILKDENS-VIFSAKSAEEKNNWMA 342
Query: 584 AF 585
A
Sbjct: 343 AL 344
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
A A++D A+E +ELGFR+G+V+EVLD+ + WW G G FP+ +V
Sbjct: 5 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 54
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
A A++D A+E +ELGFR+G+V+EVLD+ + WW G G FP+ +V
Sbjct: 8 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 57
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
A++D A E EL F+AG++I VLD D +WW G + G FPS FV
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
AEA++D EL F+AGDVI +L +++DW GT A+G FP +FV++
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 228
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
MD AEA++D EL F+AGDVI +L +++DW GT A+G FP +FV++
Sbjct: 13 MDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 72
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
AEA++D EL F+AGDVI +L +++DW GT A+G FP +FV++
Sbjct: 7 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 235
A++D A+E EL F+ G++I VLD D +WW G +G FPS FV +S
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTDLS 62
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
A A++D A+E +ELGFR+G+V+EVLD+ + WW G G FP+ +V
Sbjct: 6 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 55
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
A A++D A+E +ELGFR+G+V+EVLD+ + WW G G FP+ +V
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 242
A++D A+E EL F+ G++I VLD D +WW G G FPS FV ++ E
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETE--- 78
Query: 243 CLAALASGGS 252
AA SG S
Sbjct: 79 --AAAVSGPS 86
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 170 PIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAF 229
P+G + D + A A++D+ A +E+ F D+I ++ +D WW G G FP+ +
Sbjct: 2 PLGSENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANY 61
Query: 230 VRLR 233
V LR
Sbjct: 62 VELR 65
>pdb|1DBH|A Chain A, Dbl And Pleckstrin Homology Domains From Hsos1
Length = 354
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/362 (20%), Positives = 144/362 (39%), Gaps = 61/362 (16%)
Query: 267 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQS 326
+Q +V+ R +++ L+ + + + + +FS ++ IF + DI
Sbjct: 1 EQTYYDLVKAFXAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSV 60
Query: 327 SFL---EDLETKLDWDAPYKSCIGETF--LKHKSGFRMYSEYCNS------HPMAIATLQ 375
L ED D +P+ +G F L + F Y Y H ++ L
Sbjct: 61 KLLGHIEDTVEXTDEGSPH-PLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLS 119
Query: 376 E----LYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHP 431
+ LY + F EA ++ L LL PV C + +L + L+ D
Sbjct: 120 KPGAALYLQSIGEGFKEA-------VQYVLPRLLLAPVYH-CLHYFELLKQLEEKSEDQE 171
Query: 432 DYVKITEALEAMRDVA----------------------MLINERKRRMESLEKLAAWQQR 469
D + +A+ A+ +V + K + +++K Q+
Sbjct: 172 DKECLKQAITALLNVQSGXEKICSKSLAKRRLSESACRFYSQQXKGKQLAIKKXNEIQKN 231
Query: 470 VEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD-----ILKRNT 524
++GWEG+D+ + ++ I +G + RV + + +FLFD + CK + + +
Sbjct: 232 IDGWEGKDIGQCCNEFIXEGTLTRVGAKHERH---IFLFDGLXICCKSNHGQPRLPGASN 288
Query: 525 HVYKARLNIDTSQI-INLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLA 583
Y+ + ++ IN D + + +HA +I D++ ++F +S E+K W A
Sbjct: 289 AEYRLKEKFFXRKVQINDKDDTNEY-----KHAFEIILKDENS-VIFSAKSAEEKNNWXA 342
Query: 584 AF 585
A
Sbjct: 343 AL 344
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A++D+ A +EL F G +I V++ D DWW G +G FPS +V++
Sbjct: 39 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 88
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+A++D E ELGFR GD I V+D D +WW G +G FP +V
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+A++D E ELGFR GD I V+D D +WW G +G FP +V
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+A++D E ELGFR GD I V+D D +WW G +G FP +V
Sbjct: 4 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+A++D E ELGFR GD I V+D D +WW G +G FP +V
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|1PMS|A Chain A, Pleckstrin Homology Domain Of Son Of Sevenless 1 (Sos1)
With Glycine-Serine Added To The N-Terminus, Nmr, 20
Structures
Length = 136
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 68/133 (51%), Gaps = 15/133 (11%)
Query: 459 SLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD 518
+++K+ Q+ ++GWEG+D+ + ++ I +G + RV + + +FLFD ++ CK +
Sbjct: 6 AIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGA---KHERHIFLFDGLMICCKSN 62
Query: 519 -----ILKRNTHVYKARLNIDTSQI-INLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCC 572
+ ++ Y+ + ++ IN D + +HA +I D + ++F
Sbjct: 63 HGQPRLPGASSAEYRLKEKFFMRKVQINDKDDTSEY-----KHAFEIILKDGNS-VIFSA 116
Query: 573 RSLEDKARWLAAF 585
+S E+K W+AA
Sbjct: 117 KSAEEKNNWMAAL 129
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 167 RRKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFP 226
RR +G D+ A++D ELGF+ GD+I + + +D +W+ G SG+FP
Sbjct: 3 RRASVGSDQP---CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFP 59
Query: 227 SAFVRLRVS 235
+V + V+
Sbjct: 60 INYVEILVA 68
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+A++D E ELGFR GD I V+D D +WW G +G FP +V
Sbjct: 159 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWGTRGEASGWFPSAFVRLR 233
A A +D A +EL F+ GD+++VL+ D++W+ G+ P ++ ++
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 193 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+EL F GDVI V + WW GT +GWFPS +VR
Sbjct: 21 DELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 193 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+EL F GDVI V + WW GT +GWFPS +VR
Sbjct: 19 DELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
A++ V E E+L R GD+I +L+ + DWW G + G+FP+ FV+
Sbjct: 12 ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQ 60
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 193 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+EL F GDVI V + WW GT +GWFPS +VR
Sbjct: 21 DELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
M+ FV +A++D E+ EL F+ GDVI +++ D +WW G G FPS +V
Sbjct: 2 METKFV---QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 193 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+EL F GDVI V + WW GT +GWFPS +VR
Sbjct: 23 DELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVR 61
>pdb|1AWE|A Chain A, Human Sos1 Pleckstrin Homology (Ph) Domain, Nmr, 20
Structures
Length = 130
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 15/125 (12%)
Query: 467 QQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD-----ILK 521
Q+ ++GWEG+D+ + ++ I +G + RV + + +FLFD ++ CK + +
Sbjct: 5 QKNIDGWEGKDIGQCCNEFIMEGTLTRVGA---KHERHIFLFDGLMICCKSNHGQPRLPG 61
Query: 522 RNTHVYKARLNIDTSQI-INLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKAR 580
+ Y+ + ++ IN D + + +HA +I D++ ++F +S E+K
Sbjct: 62 ASNAEYRLKEKFFMRKVQINDKDDTNEY-----KHAFEIILKDENS-VIFSAKSAEEKNN 115
Query: 581 WLAAF 585
W+AA
Sbjct: 116 WMAAL 120
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+A++D E+ EL F+ GDVI +++ D +WW G G FPS +V
Sbjct: 4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+A++D E+ EL F+ GDVI +++ D +WW G G FPS +V
Sbjct: 4 FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 174 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 233
+ D + A A++D+ A +E+ F D+I ++ +D WW G G FP+ +V LR
Sbjct: 13 ENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 72
Query: 234 VS 235
S
Sbjct: 73 QS 74
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 170 PIGMDEDFVVLA--EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPS 227
P+G E F++L A+ D+ E+ GDV+EV++ + WW+ GW P+
Sbjct: 2 PLGSPE-FIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPA 60
Query: 228 AFVRLRVSQEDT 239
+F+ S ++T
Sbjct: 61 SFLEPLDSPDET 72
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
A+ + A+E +E+ G+ +EV+ L WW + + +G+FPS +++
Sbjct: 86 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+ ++D+ +EL GDVI+V++ ++ WW GT G FPS FV+
Sbjct: 8 KVLFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVK 57
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 234
+A++D ELGFR GD+I + + +D +W+ G SG+FP ++V++ V
Sbjct: 17 KALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQVLV 69
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 170 PIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAF 229
P+G D + A A++D+ A +E+ F D+I ++ +D WW G G FP+ +
Sbjct: 2 PLG-SSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANY 60
Query: 230 VRLR 233
V LR
Sbjct: 61 VELR 64
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
E+FV +A D+ A + +L F G+ I +L DWWWG R G+ P+ V
Sbjct: 8 EEFVAIA----DYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 230
A+A +D A + EL + GD+I++L+ + WW RGE GWFPS +V
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWW--RGEIYGRIGWFPSNYV 58
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW---------GTRGEASGWFPSAFV 230
A++D+ A AE+L FRAGD ++VLDT WW G + G+ PS +V
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV 68
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 230
A++D+ A ++EL GD+I V + DWW+G+ G+ G+FP+ V
Sbjct: 11 ALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L A++D+ +E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 172 GMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
M + ++ A+A++ A + L F DVI VL+ D WW+G GWFP ++V+
Sbjct: 6 AMAQGALLQAQALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYVK 64
Query: 232 L 232
L
Sbjct: 65 L 65
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+ +++++ +EL + GD+I++ + ++ WW GT G FPS FV+
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+ +++++ +EL + GD+I++ + ++ WW GT G FPS FV+
Sbjct: 11 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 60
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVK 59
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 170 PIGMDEDFVVLA--EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPS 227
P+G E F++L A+ D+ E+ GDV+EV++ + WW+ GW P+
Sbjct: 2 PLGSPE-FIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPA 60
Query: 228 AFVRLRVSQEDTVEDCLAALASGGSKTLRRRTS-----ISLLSNDQVRSRVVRELIN 279
+F+ S ++T ED A ++ T+ +SLL + V V+ +L++
Sbjct: 61 SFLEPLDSPDET-EDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAV--EVIHKLLD 114
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
A+ + A+E +E+ G+ +EV+ L WW + + +G+FPS +++
Sbjct: 86 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 238
+ + ++ +EL + GD+IEV+ ++ WW G +G FPS F++ + D
Sbjct: 22 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESD 78
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 235
A++D ELGF+ GD+I + + +D +W+ G SG+FP +V + V+
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVA 64
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+ + ++ +EL + GD+IEV+ ++ WW G +G FPS F++
Sbjct: 11 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 60
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 174 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
DE L A++D+ E+ + GD++ +L++ ++DWW G+ G+ P+A+V+
Sbjct: 2 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVK 59
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 59
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRL 232
A A+++ + +L F+ GDVI +L D DWW G G FP+ +VR+
Sbjct: 6 AVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVRV 59
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A++ A+E EL F GD I +L TL+ W G+ +G FP FV+L
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKL 67
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L A++D+ E+ + GD++ +L++ ++DWW G+ P+A+V+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVK 59
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 234
E +VV++ ++ E EL +AG+V++V++ + WW+ + E GW P+ ++ +
Sbjct: 9 EQYVVVS----NYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQN 64
Query: 235 S 235
S
Sbjct: 65 S 65
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 240
A+A+ D + +ELGFR D+I ++ D W G GWFP+ FV V E +
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFV--EVLDERSK 67
Query: 241 EDCLAALASGG 251
E +A+ S G
Sbjct: 68 EYSIASGPSSG 78
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 239
A+ D+ E+ GDV+EV++ + WW+ GW P++F+ S ++T
Sbjct: 15 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDET 71
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
A+ + A+E +E+ G+ +EV+ L WW + + +G+FPS +++
Sbjct: 85 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 133
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 172 GMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
G DE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 11 GSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 70
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFV 230
A A ++ A + EL R GDV+ + + D+ WW G GWFPS +V
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 61
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRL 232
A A++ E+ +L FR GDVI +L D DWW G G FP+ +V L
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 34/59 (57%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+++V+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVK 59
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 194 ELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 237
ELGF+ GD+I + + +D +W+ G SG+FP +V + V E
Sbjct: 19 ELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLE 62
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWW 215
VLA+A++D+VA +EL FR GD++ VL DT D WW
Sbjct: 4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWW 42
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L ++D+ EL + GD++ +L++ ++DWW + G+ P+A+++
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLK 59
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+ +V+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVK 59
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 32/52 (61%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
L A++D+ +E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 3 LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 54
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
EA++ + A + E+L F+ GD+I VL ++ +W G G FP FV
Sbjct: 9 EALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 174 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
DE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 2 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVK 59
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L ++D+ EL + GD++ +L++ ++DWW + G+ P+A+++
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLK 59
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 237
++ +A ++ +EL GD+I V + WW GT +GWFPS +VR S E
Sbjct: 11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSE 69
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 230
A++D++A +A+E+ F+ GD I + +D W +GT R +G P+ +V
Sbjct: 8 AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--------GTRGEASGW 224
MDE L A++D+ E+ + GD++ +L++ ++DWW G E G+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGF 60
Query: 225 FPSAFVR 231
P+A+V+
Sbjct: 61 VPAAYVK 67
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
L +A++ A + +EL GD++ + + + WW+G+ G FP+A+V
Sbjct: 9 LCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYV 59
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 193 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+EL F GD+I + D D +WW GT +G PS +V
Sbjct: 22 DELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 58
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--------GTRGEASGW 224
MDE L A++D+ E+ + GD++ +L++ ++DWW G E G+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGF 60
Query: 225 FPSAFVR 231
P+A+V+
Sbjct: 61 VPAAYVK 67
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+ +A++D+ A +EL F+ GD I V WW G GW P+ +V+
Sbjct: 4 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 58
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 193 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+EL F GD+I + D D +WW GT +G PS +V
Sbjct: 18 DELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+ +A++D+ A +EL F+ GD I V WW G GW P+ +V+
Sbjct: 5 IQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRL 232
A A +D+ A E EL F D I ++ +D DWW G + + G FPS +V L
Sbjct: 7 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 60
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A+A+ A + L F D+I VL+ +WW+G GWFP ++V++
Sbjct: 13 AQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKI 63
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRL 232
A A +D+ A E EL F D I ++ +D DWW G + + G FPS +V L
Sbjct: 4 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 57
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 239
A+ D+ E+ GDV+EV++ + WW+ GW P++F+ S ++T
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDET 72
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
A+ + A+E +E+ G+ +EV+ L WW + + +G+FPS +++
Sbjct: 86 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRL 232
A A +D+ A E EL F D I ++ +D DWW G + + G FPS +V L
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 33/59 (55%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L ++D+ E+ + GD++ +L++ ++DWW + G+ P+A+++
Sbjct: 1 MDETGKELVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLK 59
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 33/59 (55%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L ++D+ E+ + GD++ +L++ ++DWW + G+ P+A+++
Sbjct: 1 MDETGKELVLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLK 59
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 231
+A++ ++ +EL R GD+++V++ D W+ GT R + G FP +V+
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
MDE L ++D+ EL + GD++ +L++ ++DWW G+ P+A+++
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLK 59
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 189 AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
AM E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 44
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 231
+A++ ++ +EL R GD+++V++ D W+ GT R + G FP +V+
Sbjct: 10 QALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVK 61
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 37.4 bits (85), Expect = 0.023, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 3 LVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 54
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVL---DTLDRDWWWGTRGEASGWFPSAFVRL 232
A+WD+ A +EL FR G+ + VL + DWWW G+ P + L
Sbjct: 159 ALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGL 211
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
A++ + ++E +L F G+ I V D +WW G+ G+ SG FPS +V+
Sbjct: 13 ALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVK 60
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
A++D+ A +EL AGD++EV+ + WW R G+ P +++
Sbjct: 13 ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYL 60
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 240
A A + + A+EL FR GDV+ + + DWW G G P ++ L E V
Sbjct: 13 AVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQV 72
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
L A++D+ E+ + GD++ +L++ ++DWW G+ P+A+V+
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVK 54
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+A++ + A + +EL F A D+I+++ WW G G FP+ +V
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
>pdb|2EKH|A Chain A, Solution Structures Of The Sh3 Domain Of Human Kiaa0418
Length = 80
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 190 MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 237
++ E+ F AG ++VL+ + WW+ GE GW PS ++ L +++
Sbjct: 20 VQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQ 67
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 169 KPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFP 226
K + M E+ +V+A+ WD+ A + +EL + + + +LD D WW R A +G+ P
Sbjct: 24 KNLHMTEEVIVIAK--WDYTAQQDQELDIKKNERLWLLD--DSKTWWRVRNAANRTGYVP 79
Query: 227 SAFV 230
S +V
Sbjct: 80 SNYV 83
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 167 RRKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEASGWF 225
RR +G E A A +D A +EL F+ GD+++VL + D++W+ G+
Sbjct: 3 RRASVGSME-----AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFI 57
Query: 226 PSAFVRLRVSQEDTVED 242
P ++ ++ E V D
Sbjct: 58 PKNYIEMKPHPEFIVTD 74
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 177 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFV 230
F +A++D+ A +EL F +I+ ++ D WW G G+ WFPS +V
Sbjct: 5 FKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 59
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 177 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFV 230
F +A++D+ A +EL F +I+ ++ D WW G G+ WFPS +V
Sbjct: 2 FKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
A++D+ + +EL F+ G +I V+ D W+ G +G FP +V
Sbjct: 22 AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 69
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 230
AV+D+ A + +E+ F+ GD I + +D W +GT R +G P+ +V
Sbjct: 8 AVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYV 57
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSAFV 230
V + A++D+ A E+L F+ G+ ++++ + D WW R A SG+ PS +V
Sbjct: 27 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGD-WWEARSIATGKSGYIPSNYV 81
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 187 HVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+VA +EL G + V++ WW G+ GWFPS +V
Sbjct: 9 YVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 232
A++D+ A + +E+ FR GD I + +D W +GT R +G P+ ++
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--------GTRGEASGWFPSAFVR 231
L A++D+ E+ + GD++ +L++ ++DWW G E G+ P+A+V+
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVR 231
ED +V+A ++D+ A+ E+L F+ GD + VL+ + WW R A+ G+ PS +V
Sbjct: 1 EDIIVVA--LYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNYVA 56
Query: 232 LRVSQEDTVE 241
RV +T E
Sbjct: 57 -RVDSLETEE 65
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 193 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGS 252
+EL GD+I + D D +WW GT +G PS +V Q +++++ L A G+
Sbjct: 29 DELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV---AEQAESIDNPLHEAAKRGN 85
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 35.8 bits (81), Expect = 0.080, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
EA++ + +LG + GD +++L+ L +W+ G+ +G FP+ +V+
Sbjct: 6 EALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 35.8 bits (81), Expect = 0.081, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 190 MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
M E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 1 MGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 42
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 35.8 bits (81), Expect = 0.082, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 177 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFVRLRVS 235
F +A++D+ A +EL F +I+ ++ + WW G G+ WFPS +V V+
Sbjct: 5 FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64
Query: 236 QEDTVED 242
E D
Sbjct: 65 PEGIHRD 71
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 35.4 bits (80), Expect = 0.084, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--------GTRGEASGW 224
MDE L A++D+ E+ + GD++ +L++ ++DWW E G+
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGF 60
Query: 225 FPSAFVR 231
P+A+V+
Sbjct: 61 VPAAYVK 67
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 35.4 bits (80), Expect = 0.084, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 230
ED +V+A ++D+ A+ E+L F+ GD + VL+ + WW R A+ G+ PS +V
Sbjct: 24 EDIIVVA--LYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNYV 78
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 35.4 bits (80), Expect = 0.088, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 232
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFVR---------- 231
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVS 198
Query: 232 --LRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLH 289
+ +QE + L G T + L N + +RV+++ + D +
Sbjct: 199 ALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALAL 258
Query: 290 DVSE 293
+V E
Sbjct: 259 EVGE 262
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 232
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 58
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 35.4 bits (80), Expect = 0.100, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 230
V + A++D+ A E+L F+ G+ ++++ + D WW R A+ G+ PS +V
Sbjct: 5 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGD-WWEARSIATGKNGYIPSNYV 59
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 232
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L
Sbjct: 7 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 59
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Peroxisomal
Biogenesis Factor 13
Length = 93
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGT-RGEASGWFPSAF 229
ED V+A A +D VA+ EE+ FRAGD++ + R W + G+ +G P+ +
Sbjct: 14 EDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANY 73
Query: 230 VRL 232
V++
Sbjct: 74 VKI 76
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 176 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
D + A ++++A +EL G + V++ WW G+ GWFPS +V
Sbjct: 15 DLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 192 AEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
E+ + GD++ +L++ ++DWW + G+ P+A+V+
Sbjct: 13 GREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 52
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSAFV 230
V L A++D+ A +L F G+ ++LD DWW T GE +G+ PS +V
Sbjct: 6 VTLFVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGE-TGYIPSNYV 60
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A A +D A +EL + GD++ + +D++W+ G G FP ++ L
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIEL 61
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFVRL 232
A+WD+ +EL + GD + ++ D D WWW + G+ P + L
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFVRL 232
A+WD+ +EL + GD + ++ D D WWW + G+ P + L
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 185 WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
++++A +EL G + V++ WW G+ GWFPS +V
Sbjct: 11 FNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGTRGEASGWFPSAFVRL 232
A ++D+ A + EL A +VI V +D DW G RG G P ++ L
Sbjct: 20 ARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLEL 73
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 187 HVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+VA +EL G + V + WW G+ GWFPS +V
Sbjct: 10 YVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDR--DWWWGTRGEASGWFPSAFVRL 232
A++ + +L F+AGD I V+ D DWW G +G FP+ +V +
Sbjct: 22 ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTM 73
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 232
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L
Sbjct: 13 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 65
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVR 231
ED +V+A ++D+ A+ E+L F+ GD + VL+ WW R A+ G+ PS +V
Sbjct: 8 EDIIVVA--LYDYEAIHHEDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYV- 62
Query: 232 LRVSQEDTVE 241
RV +T E
Sbjct: 63 ARVDSLETEE 72
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEA--SGWFPSAFVRL 232
+A+ +VA +E+L G +I +L WW G RG+ GWFP++ V+L
Sbjct: 9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFV 230
M E+ +V+A+ WD+ A + +EL + + + +LD D WW R A +G+ PS +V
Sbjct: 1 MTEEVIVIAK--WDYTAQQDQELDIKKNERLWLLD--DSKTWWRVRNAANRTGYVPSNYV 56
Query: 231 RLRV 234
++
Sbjct: 57 ERKL 60
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 230
ED +V+A ++D+V+ ++L F+ GD + VL+ + WW R A+ G+ PS +V
Sbjct: 2 EDIIVVA--LYDYVSWSPDDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNYV 56
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 172 GMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSA 228
M ++ A++D+ A+ E+L F+ GD + VL+ + WW R A+ G+ PS
Sbjct: 2 AMGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSN 59
Query: 229 FVRLRVSQEDTVE 241
+V RV +T E
Sbjct: 60 YV-ARVDSLETEE 71
>pdb|1AOJ|A Chain A, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined Dimer
pdb|1AOJ|B Chain B, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined Dimer
pdb|1I07|A Chain A, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I07|B Chain B, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I0C|A Chain A, Eps8 Sh3 Closed Monomer
pdb|1I0C|B Chain B, Eps8 Sh3 Closed Monomer
Length = 60
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFVRLRVSQE 237
A++ +D VA + EL DV+E+LD DR WW R + SG+ P+ + + + E
Sbjct: 4 AKSKYDFVARNSSELSVMKDDVLEILD--DRRQWWKVRNASGDSGFVPNNILDIMRTPE 60
>pdb|2KXC|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Irtks-Sh3
And Espfu- R47 Complex
pdb|2LNH|B Chain B, Enterohaemorrhagic E. Coli (Ehec) Exploits A Tryptophan
Switch To Hijack Host F-Actin Assembly
Length = 67
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 195 LGFRAGDVIEVLDTLDRD-WWWGTR--GEASGWFPSAFVRL 232
L F GDVI +L ++D W +G +A GWFPS++ +L
Sbjct: 24 LSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKL 64
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 192 AEELGFRAGDVIEVLDTLDRDWWWGTRGEA-SGWFPSAFVRL 232
+ L F AG++I +L D WW G + + GWFP+++V+L
Sbjct: 18 GQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQL 59
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSAFVRL 232
+ ++D A +EL F G+VI V D++WW G + E G FP +FV +
Sbjct: 14 KTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A+A+ ++ +L F GDVI + LD +W+ G SG FP++ V +
Sbjct: 10 AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSAFVRL 232
+ ++D A +EL F G+VI V D++WW G + E G FP +FV +
Sbjct: 5 KTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 58
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 230
ED +V+A ++D+V+ ++L F+ GD + VL+ WW R A+ G+ PS +V
Sbjct: 2 EDIIVVA--LYDYVSWSPDDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 56
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 230
++ A++D+ A+ E+L F+ GD + VL+ + WW R A+ G+ PS +V
Sbjct: 1 IIVVALYDYEAIHHEDLSFQKGDQMVVLE--ESGEWWKARSLATRKEGYIPSNYV 53
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLD-----TLDRDWWWGTRGEAS-GWFPSAFV 230
AV+D+ A EEL R GD ++VL + D WW G G FPS +V
Sbjct: 34 AVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYV 87
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 494 VTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG 544
V +G+ T T L+L+D+Q+ + + R T + RL++D +Q+ LP G
Sbjct: 24 VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQL--TRLDLDNNQLTVLPAG 72
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 170 PIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAF 229
P+G E A A +D+V A EL F+ G + + DWW G G P +
Sbjct: 2 PLGSPE----FAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQY 57
Query: 230 V 230
+
Sbjct: 58 I 58
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 180 LAEAV--WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+ EA+ +D+ A +EL G++I + D WW G G FP FVR
Sbjct: 1 MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVR 54
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 230
ED +V+A ++D+ A+ E+L F+ GD + VL+ WW R A+ G+ PS +V
Sbjct: 8 EDIIVVA--LYDYEAIHHEDLSFQKGDQMVVLEESGE--WWKARSLATRKEGYIPSNYV 62
>pdb|1SPK|A Chain A, Solution Structure Of Rsgi Ruh-010, An Sh3 Domain From
Mouse Cdna
Length = 72
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 195 LGFRAGDVIEVLDTLDRD-WWWGTRG--EASGWFPSAFVRL 232
L F GDV+ +L ++D W +G +A GWFPS++ +L
Sbjct: 25 LSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 494 VTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG 544
V +G+ T T L+L+D+Q+ + + R T + RL++D +Q+ LP G
Sbjct: 32 VPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQL--TRLDLDNNQLTVLPAG 80
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 223
+WD + EEL FRAGDV V + WWW T + +G
Sbjct: 15 GLWDFKSRTDEELSFRAGDVFHVARK-EEQWWWATLLDEAG 54
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLRVSQED 238
A++ A +E+ F +GD+I+V + + W +G+ GWFP +V S E+
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSEN 67
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 13/129 (10%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV-RLRVS 235
V A++D + E+L F+ GD++++ D + WW + G P +V + R S
Sbjct: 1 VEYVRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEKCRPS 60
Query: 236 -----------QEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDF 284
Q+ + L G T + L N +RV+++ + D
Sbjct: 61 SASVSTLTGGNQDSSHPQPLGGPEPGPYAQPSINTPLPNLQNGPFYARVIQKRVPNAYDK 120
Query: 285 VKVLHDVSE 293
+ +V E
Sbjct: 121 TALALEVGE 129
>pdb|1X6B|A Chain A, Solution Structures Of The Sh3 Domain Of Human Rho Guanine
Exchange Factor (Gef) 16
Length = 79
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 189 AMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFVRL 232
A +A+E+ + DV+ VL D W +G R GE +GWFP F R
Sbjct: 28 AKQADEVTLQQADVVLVLQQED-GWLYGERLRDGE-TGWFPEDFARF 72
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 192 AEELGFRAGDVIEVLDTLDRDWWWGTR 218
++ L FR GDV+ V+D D +WW R
Sbjct: 446 SQALSFRFGDVLHVIDAGDEEWWQARR 472
>pdb|3RNJ|A Chain A, Crystal Structure Of The Sh3 Domain From Irsp53 (Baiap2)
Length = 67
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 182 EAVWDHVAMEAEEL-GFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVRL 232
+A++ H A + L F+ GD+I +L RD W E + GWFP ++ R+
Sbjct: 11 KAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 192 AEELGFRAGDVIEVLDTLDRDWWWGTR 218
++ L FR GDV+ V+D D +WW R
Sbjct: 26 SQALSFRFGDVLHVIDAGDEEWWQARR 52
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 192 AEELGFRAGDVIEVLDTLDRDWWWGTR 218
++ L FR GDV+ V+D D +WW R
Sbjct: 20 SQALSFRFGDVLHVIDAGDEEWWQARR 46
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
A A +D+V A EL F+ G + + DWW G G P ++
Sbjct: 12 AIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYI 61
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEASGWFPSAFV 230
A++D++ M A +L R GD +L+ + WW + G+ PS +V
Sbjct: 6 ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 54
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEASGWFPSAFV 230
A++D++ M A +L R GD +L+ + WW + G+ PS +V
Sbjct: 13 ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
>pdb|2DLP|A Chain A, Solution Structure Of The Sh3 Domain Of Human Kiaa1783
Protein
Length = 85
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 195 LGFRAGDVIEVLD--TLDRDWWWGTRGEASGWFPSAFVR 231
L F GD+I++L TL+ W +G+ G SG FP+ V+
Sbjct: 25 LSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQ 63
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 214
ED + ++D +AE+L F+ G+++ +++ + WW
Sbjct: 122 EDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWW 161
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 214
ED + ++D +AE+L F+ G+++ +++ + WW
Sbjct: 122 EDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWW 161
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
Length = 62
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 214
L A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 23 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 57
>pdb|2C3Q|A Chain A, Human Glutathione-S-Transferase T1-1 W234r Mutant, Complex
With S-Hexylglutathione
pdb|2C3Q|B Chain B, Human Glutathione-S-Transferase T1-1 W234r Mutant, Complex
With S-Hexylglutathione
pdb|2C3Q|C Chain C, Human Glutathione-S-Transferase T1-1 W234r Mutant, Complex
With S-Hexylglutathione
pdb|2C3Q|D Chain D, Human Glutathione-S-Transferase T1-1 W234r Mutant, Complex
With S-Hexylglutathione
pdb|2C3T|A Chain A, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|B Chain B, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|C Chain C, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|D Chain D, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
Length = 247
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 432 DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGE 490
D V ITE + + + E KLA W+QRVE GEDL + + ++I + +
Sbjct: 174 DLVAITELMHP-------VGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAK 225
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 170 PIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW-WGTRGEASGWFPSA 228
P+G E+ VV+A ++D+ + +EL R + +LD+ + WW R G+ PS+
Sbjct: 2 PLGSPEETVVIA--LYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSS 59
Query: 229 FV 230
++
Sbjct: 60 YL 61
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFV 230
V +A++D+ +EL F G +I +L+ ++D +W G G FPS V
Sbjct: 8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63
>pdb|2C3N|A Chain A, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|B Chain B, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|C Chain C, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|D Chain D, Human Glutathione-S-Transferase T1-1, Apo Form
Length = 247
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 432 DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGE 490
D V ITE + + + E KLA W+QRVE GEDL + + ++I + +
Sbjct: 174 DLVAITELMHP-------VGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHEVILKAK 225
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 165 LLRRKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEA 221
+ R P +E + V A +++ A A+EL + GD + +L+T + W+ G +
Sbjct: 1 MTRWVPTKREEKYGV---AFYNYDARGADELSLQIGDTVHILETYE-GWYRGYTLRKKSK 56
Query: 222 SGWFPSAFVRLR 233
G FP++++ L+
Sbjct: 57 KGIFPASYIHLK 68
>pdb|1G8F|A Chain A, Atp Sulfurylase From S. Cerevisiae
pdb|1G8G|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8G|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Binary Product
Complex With Aps
pdb|1G8H|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
pdb|1G8H|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
Complex With Aps And Ppi
Length = 511
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 338 WDAPYKSCIGETFLKH-KSGFRMYSEYCNSHPMAIATLQELYQHNNYSKFFEACRLMRGL 396
W P + E F K R+ + P+AI T+Q++Y+ N K EA R+ RG
Sbjct: 80 WTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQDVYKPN---KTIEAERVFRGD 136
Query: 397 IEIPLDGYLLT 407
E P YL
Sbjct: 137 PEHPAISYLFN 147
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE--ASGWFPSAFV 230
M E+ VV+A+ +D+VA + +EL + + + +LD D WW R +G+ PS +V
Sbjct: 3 MAEEVVVVAK--FDYVAQQEQELDIKKNERLWLLD--DSKSWWRVRNSMNKTGFVPSNYV 58
Query: 231 RLRVS 235
+ S
Sbjct: 59 ERKNS 63
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE--ASGWFPSAFV 230
M E+ VV+A+ +D+VA + +EL + + + +LD D WW R +G+ PS +V
Sbjct: 4 MAEEVVVVAK--FDYVAQQEQELDIKKNERLWLLD--DSKSWWRVRNSMNKTGFVPSNYV 59
Query: 231 RLRVS 235
+ S
Sbjct: 60 ERKNS 64
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR----GEASGWFPSAFV 230
V L A++D+ A +L F G+ ++LD WW R GE +G+ PS +V
Sbjct: 6 VTLFVALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGE-TGYIPSNYV 61
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 186 DHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEASGWFPSAFVRLR 233
D A +EL F+ GD+++VL + D++W+ G+ P ++ ++
Sbjct: 8 DFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIEMK 56
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 184 VWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
V + + +E+GF G +EV+ WW+ GW P+++++
Sbjct: 14 VQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 184 VWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAF 229
++ + +EL FR G++I ++ +T + WW G G FP F
Sbjct: 12 LFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A +D A +EL + GD++ + +D++W G G FP+ +V +
Sbjct: 10 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 61
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 230
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS--GWFPSAFV 230
V A++D+ E +EL F+AGD + L D W R ++ G +P+ +V
Sbjct: 4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 230
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A +D A +EL + GD++ + +D++W G G FP+ +V +
Sbjct: 4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 230
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 5 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 53
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 230
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 230
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 56
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 230
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 54
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 230
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 19 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 67
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS--GWFPSAFV 230
V A++D+ E +EL F+AGD + ++ D W R + G +P+ +V
Sbjct: 429 VRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV 482
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 230
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 141 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 189
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFV 230
A++D + E+L F+ GD++ + D + WW E G P +V
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYV 187
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 230
A++ + +EL R GD ++V+ D W+ G R + G FP +V
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EASGWFPSAFV 230
+A++D+ A ++EL F G +I + WW G G +FPS +V
Sbjct: 11 KALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYV 60
>pdb|1X6G|A Chain A, Solution Structures Of The Sh3 Domain Of Human
Megakaryocyte-Associated Tyrosine-Protein Kinase
Length = 81
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 186 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 223
+H + EL FR GDV+ +L+ + W+ + SG
Sbjct: 25 EHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSG 62
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 168 RKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW-WGTRGEASGWFP 226
R+P+ E+ VV+A ++D+ + +EL R + +LD+ + WW R G+ P
Sbjct: 11 RRPLWEPEETVVIA--LYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVP 68
Query: 227 SAFV 230
S+++
Sbjct: 69 SSYL 72
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain 3
Length = 60
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 185 WDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEA--SGWFPSAFV 230
+D +A +EL ++GD + +L D +DWW ++ SG P+ F+
Sbjct: 9 YDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,294,614
Number of Sequences: 62578
Number of extensions: 740659
Number of successful extensions: 2170
Number of sequences better than 100.0: 248
Number of HSP's better than 100.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1911
Number of HSP's gapped (non-prelim): 261
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)