Query psy1488
Match_columns 630
No_of_seqs 508 out of 3011
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 23:09:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2070|consensus 100.0 2.6E-51 5.6E-56 414.8 25.8 387 178-587 17-404 (661)
2 KOG4424|consensus 100.0 9E-47 2E-51 391.5 26.3 316 267-603 64-383 (623)
3 KOG3523|consensus 100.0 4.8E-40 1E-44 342.0 26.7 319 263-586 251-591 (695)
4 KOG3520|consensus 100.0 1.5E-38 3.2E-43 356.0 20.4 332 259-605 380-737 (1167)
5 KOG3518|consensus 100.0 1.9E-38 4.1E-43 308.0 17.4 305 270-592 122-435 (521)
6 KOG2996|consensus 100.0 2.1E-37 4.5E-42 319.1 24.2 320 265-595 193-517 (865)
7 KOG4305|consensus 100.0 5.1E-38 1.1E-42 351.0 19.7 385 196-598 278-695 (1029)
8 KOG3521|consensus 100.0 3.7E-33 7.9E-38 292.2 23.8 326 263-600 171-537 (846)
9 KOG3519|consensus 100.0 1E-33 2.2E-38 322.5 18.4 438 179-619 247-699 (756)
10 smart00325 RhoGEF Guanine nucl 100.0 3E-31 6.5E-36 254.4 16.5 180 273-452 1-180 (180)
11 cd00160 RhoGEF Guanine nucleot 100.0 1E-30 2.2E-35 251.0 18.3 179 270-451 1-181 (181)
12 PF00621 RhoGEF: RhoGEF domain 100.0 4.3E-28 9.3E-33 232.1 17.8 179 273-452 1-180 (180)
13 COG5422 ROM1 RhoGEF, Guanine n 99.9 3E-28 6.5E-33 261.8 10.8 339 260-600 475-845 (1175)
14 KOG4240|consensus 99.9 1.6E-27 3.4E-32 265.8 5.5 289 269-592 632-931 (1025)
15 KOG0689|consensus 99.9 5.8E-27 1.3E-31 245.4 9.1 293 268-592 61-363 (448)
16 KOG3522|consensus 99.9 3.6E-25 7.7E-30 239.2 14.0 255 270-544 1-274 (925)
17 KOG3531|consensus 99.9 1.7E-24 3.7E-29 232.5 4.4 309 272-597 536-852 (1036)
18 KOG3524|consensus 99.8 5.5E-20 1.2E-24 195.1 10.9 303 265-587 380-709 (850)
19 cd01224 PH_Collybistin Collybi 99.8 6.8E-19 1.5E-23 148.9 14.2 107 484-590 1-108 (109)
20 cd01220 PH_CDEP Chondrocyte-de 99.7 3.7E-16 8.1E-21 132.9 14.2 98 484-590 1-98 (99)
21 cd01218 PH_phafin2 Phafin2 Pl 99.7 4.2E-16 9.1E-21 133.0 14.2 102 482-593 1-102 (104)
22 cd01261 PH_SOS Son of Sevenles 99.7 3.5E-16 7.5E-21 134.9 12.7 101 483-590 2-110 (112)
23 cd01222 PH_clg Clg (common-sit 99.6 6E-14 1.3E-18 118.1 13.3 93 483-589 2-95 (97)
24 cd01219 PH_FGD FGD (faciogenit 99.6 7.5E-14 1.6E-18 120.0 13.5 98 484-590 1-100 (101)
25 cd01232 PH_TRIO Trio pleckstri 99.5 2.4E-13 5.2E-18 118.0 13.3 100 483-590 3-113 (114)
26 PF14604 SH3_9: Variant SH3 do 99.4 3.9E-14 8.5E-19 104.2 2.2 49 183-231 1-49 (49)
27 cd01226 PH_exo84 Exocyst compl 99.4 2.3E-12 5E-17 107.8 12.2 97 484-590 1-99 (100)
28 cd01227 PH_Dbs Dbs (DBL's big 99.4 5.9E-12 1.3E-16 111.7 13.7 102 483-592 1-118 (133)
29 cd01221 PH_ephexin Ephexin Ple 99.4 4.9E-12 1.1E-16 110.6 12.7 102 483-586 1-119 (125)
30 cd01228 PH_BCR-related BCR (br 99.4 1.9E-12 4.2E-17 105.4 8.2 91 483-589 1-94 (96)
31 KOG0162|consensus 99.3 1.5E-11 3.4E-16 131.6 13.2 54 179-232 1052-1105(1106)
32 KOG2199|consensus 99.3 2.2E-12 4.8E-17 129.9 4.4 57 178-234 215-271 (462)
33 KOG1118|consensus 99.3 3.4E-12 7.3E-17 124.4 4.5 57 178-234 306-362 (366)
34 cd01223 PH_Vav Vav pleckstrin 99.3 4.8E-11 1E-15 102.2 10.8 110 483-592 2-114 (116)
35 PF07653 SH3_2: Variant SH3 do 99.2 2.6E-12 5.6E-17 97.4 2.3 53 180-232 1-54 (55)
36 KOG1029|consensus 99.2 2.2E-11 4.8E-16 131.0 5.0 56 178-233 1053-1108(1118)
37 cd01225 PH_Cool_Pix Cool (clon 99.1 1.1E-09 2.3E-14 92.5 12.1 107 473-588 1-108 (111)
38 PF00018 SH3_1: SH3 domain; I 99.0 1.2E-10 2.6E-15 85.5 2.2 46 182-227 1-48 (48)
39 KOG4226|consensus 99.0 6E-10 1.3E-14 106.9 6.1 53 181-233 110-162 (379)
40 KOG4225|consensus 99.0 9.6E-10 2.1E-14 112.5 7.3 62 175-236 227-288 (489)
41 KOG2856|consensus 99.0 1.8E-09 3.8E-14 107.9 8.3 56 178-233 414-471 (472)
42 smart00326 SH3 Src homology 3 98.9 7.9E-10 1.7E-14 84.3 4.2 54 179-232 3-57 (58)
43 cd00174 SH3 Src homology 3 dom 98.9 1.2E-09 2.6E-14 82.0 4.4 51 181-231 2-53 (54)
44 PF15405 PH_5: Pleckstrin homo 98.9 6.6E-09 1.4E-13 93.7 9.0 105 485-589 1-135 (135)
45 KOG4348|consensus 98.8 5.8E-10 1.3E-14 113.3 0.4 61 178-238 100-160 (627)
46 KOG2996|consensus 98.8 2.9E-09 6.2E-14 112.0 4.7 56 177-232 804-861 (865)
47 KOG4348|consensus 98.8 2.1E-09 4.6E-14 109.3 3.6 56 179-234 262-319 (627)
48 KOG0931|consensus 98.8 3.1E-08 6.7E-13 101.8 9.8 186 399-601 337-537 (627)
49 PF00169 PH: PH domain; Inter 98.7 3.6E-07 7.8E-12 78.1 14.4 102 485-589 1-103 (104)
50 KOG1029|consensus 98.7 1.3E-08 2.8E-13 110.2 4.5 61 177-237 692-754 (1118)
51 KOG4269|consensus 98.6 1.2E-08 2.7E-13 112.2 1.6 259 264-539 327-611 (1112)
52 KOG1264|consensus 98.5 3.8E-08 8.3E-13 107.2 2.5 59 178-236 774-833 (1267)
53 KOG4225|consensus 98.5 5.5E-08 1.2E-12 99.8 3.3 54 179-232 433-488 (489)
54 KOG2546|consensus 98.5 1.5E-07 3.3E-12 96.2 6.2 54 180-233 425-478 (483)
55 KOG4226|consensus 98.5 9.7E-08 2.1E-12 92.0 3.6 59 178-236 191-252 (379)
56 KOG4792|consensus 98.4 1.6E-07 3.5E-12 88.2 3.8 59 176-234 122-181 (293)
57 smart00233 PH Pleckstrin homol 98.4 4.5E-06 9.7E-11 70.3 12.5 98 486-589 2-101 (102)
58 KOG0515|consensus 98.4 1.7E-07 3.7E-12 98.1 3.8 54 180-233 685-741 (752)
59 KOG3655|consensus 98.4 1.5E-07 3.2E-12 98.1 2.2 55 179-233 428-483 (484)
60 KOG3601|consensus 98.3 6.8E-07 1.5E-11 83.8 5.7 54 178-231 163-216 (222)
61 KOG1843|consensus 98.3 4.9E-07 1.1E-11 92.1 3.3 54 179-232 417-472 (473)
62 PF15411 PH_10: Pleckstrin hom 98.2 2.8E-05 6.1E-10 68.0 12.1 96 482-585 4-116 (116)
63 KOG1451|consensus 98.2 2.2E-05 4.7E-10 83.6 12.8 54 179-232 757-811 (812)
64 KOG1702|consensus 98.1 1.2E-06 2.6E-11 81.1 2.1 54 179-232 208-263 (264)
65 KOG3875|consensus 98.1 3.1E-07 6.8E-12 90.3 -1.8 57 179-235 269-332 (362)
66 KOG3523|consensus 98.1 9E-07 1.9E-11 94.5 0.7 60 177-236 607-668 (695)
67 cd00821 PH Pleckstrin homology 98.1 2E-05 4.4E-10 65.5 8.9 81 499-587 15-95 (96)
68 cd01260 PH_CNK Connector enhan 98.0 9.7E-05 2.1E-09 62.8 10.8 90 487-588 2-96 (96)
69 cd01246 PH_oxysterol_bp Oxyste 97.9 0.00015 3.3E-09 60.6 11.2 89 488-588 2-91 (91)
70 cd01233 Unc104 Unc-104 pleckst 97.9 0.00018 4E-09 61.6 11.8 95 486-589 3-98 (100)
71 KOG2222|consensus 97.9 2.9E-06 6.3E-11 87.8 0.3 58 179-236 549-606 (848)
72 cd01252 PH_cytohesin Cytohesin 97.8 0.00034 7.3E-09 62.6 12.6 94 487-591 2-115 (125)
73 cd00900 PH-like Pleckstrin hom 97.8 0.00026 5.7E-09 59.1 11.3 81 499-588 18-99 (99)
74 KOG4429|consensus 97.8 1.1E-05 2.3E-10 78.8 2.1 56 179-234 364-419 (421)
75 cd01264 PH_melted Melted pleck 97.7 0.0004 8.8E-09 59.1 10.9 82 500-588 19-100 (101)
76 KOG3771|consensus 97.7 0.00021 4.6E-09 75.2 11.1 58 174-231 396-454 (460)
77 cd01247 PH_GPBP Goodpasture an 97.7 0.00056 1.2E-08 57.4 11.5 76 500-587 15-90 (91)
78 cd01251 PH_centaurin_alpha Cen 97.7 0.00045 9.7E-09 59.5 10.2 93 488-590 2-101 (103)
79 cd01238 PH_Tec Tec pleckstrin 97.6 0.00059 1.3E-08 59.1 10.5 84 500-587 21-105 (106)
80 KOG0930|consensus 97.6 0.00038 8.2E-09 68.0 9.8 95 487-592 262-378 (395)
81 cd01257 PH_IRS Insulin recepto 97.6 0.0012 2.6E-08 56.4 11.5 91 485-587 2-100 (101)
82 cd01250 PH_centaurin Centaurin 97.5 0.001 2.2E-08 55.9 10.2 90 488-587 2-93 (94)
83 KOG1729|consensus 97.5 1.3E-05 2.9E-10 80.8 -1.6 139 475-623 36-177 (288)
84 cd01245 PH_RasGAP_CG5898 RAS G 97.5 0.00073 1.6E-08 57.3 8.6 77 501-587 17-97 (98)
85 cd01229 PH_etc2 Epithelial cel 97.5 0.00049 1.1E-08 58.6 7.3 106 479-590 2-128 (129)
86 cd01255 PH_TIAM TIAM Pleckstri 97.4 0.0028 6.1E-08 55.9 12.2 107 481-592 23-157 (160)
87 cd01235 PH_SETbf Set binding f 97.4 0.0017 3.6E-08 55.6 11.0 96 488-589 2-101 (101)
88 cd01265 PH_PARIS-1 PARIS-1 ple 97.4 0.0015 3.3E-08 55.3 10.4 87 489-589 3-94 (95)
89 KOG4792|consensus 97.4 0.00042 9.1E-09 65.7 6.7 60 176-235 225-286 (293)
90 cd01241 PH_Akt Akt pleckstrin 97.3 0.0029 6.3E-08 54.4 10.7 94 486-588 2-101 (102)
91 cd01236 PH_outspread Outspread 97.1 0.0038 8.3E-08 53.6 9.7 79 500-587 24-102 (104)
92 cd01266 PH_Gab Gab (Grb2-assoc 97.1 0.0045 9.7E-08 53.8 10.1 81 500-587 19-106 (108)
93 cd01256 PH_dynamin Dynamin ple 97.1 0.0067 1.5E-07 50.2 9.9 94 486-588 2-104 (110)
94 cd01244 PH_RasGAP_CG9209 RAS_G 97.1 0.0044 9.5E-08 52.7 9.3 77 500-587 21-97 (98)
95 KOG4773|consensus 97.1 6.1E-05 1.3E-09 75.7 -2.5 55 179-233 176-230 (386)
96 KOG2528|consensus 97.0 0.00032 7E-09 72.9 1.9 55 180-234 4-60 (490)
97 KOG4575|consensus 97.0 0.00066 1.4E-08 73.2 4.1 53 179-231 9-63 (874)
98 KOG3524|consensus 96.9 0.0065 1.4E-07 66.7 11.1 182 268-461 393-579 (850)
99 KOG4278|consensus 96.9 0.00092 2E-08 72.6 4.6 59 178-237 90-150 (1157)
100 KOG3632|consensus 96.9 0.0036 7.8E-08 70.9 9.2 57 178-234 1138-1203(1335)
101 cd01253 PH_beta_spectrin Beta- 96.8 0.013 2.8E-07 50.4 10.3 81 500-587 23-103 (104)
102 cd01263 PH_anillin Anillin Ple 96.8 0.011 2.3E-07 52.4 9.7 86 500-588 19-122 (122)
103 KOG3725|consensus 96.8 0.00099 2.1E-08 64.2 3.4 56 178-233 317-374 (375)
104 KOG0609|consensus 96.8 0.00083 1.8E-08 71.9 2.9 55 178-232 214-280 (542)
105 KOG3601|consensus 96.7 0.00033 7.1E-09 66.1 -0.6 52 181-232 3-55 (222)
106 KOG0197|consensus 96.6 0.0013 2.9E-08 70.4 3.0 55 179-233 12-69 (468)
107 KOG3775|consensus 96.4 0.0016 3.5E-08 66.1 2.1 56 181-236 265-322 (482)
108 cd01230 PH_EFA6 EFA6 Pleckstri 96.4 0.046 1E-06 48.0 10.9 86 500-592 26-114 (117)
109 KOG0521|consensus 96.3 0.16 3.4E-06 59.1 17.3 307 268-593 38-372 (785)
110 cd01249 PH_oligophrenin Oligop 96.1 0.05 1.1E-06 46.3 9.1 51 529-586 52-102 (104)
111 KOG3557|consensus 96.1 0.002 4.3E-08 70.1 0.8 56 179-235 501-557 (721)
112 PF15409 PH_8: Pleckstrin homo 95.9 0.18 3.8E-06 41.9 11.3 73 500-588 14-88 (89)
113 PTZ00283 serine/threonine prot 95.9 0.22 4.8E-06 55.6 15.9 110 478-589 366-489 (496)
114 PF14593 PH_3: PH domain; PDB: 95.6 0.36 7.7E-06 41.4 12.6 96 478-592 6-102 (104)
115 PF15413 PH_11: Pleckstrin hom 95.6 0.31 6.7E-06 42.6 12.4 97 488-588 2-112 (112)
116 KOG3522|consensus 94.8 0.15 3.3E-06 57.7 9.8 120 262-386 7-130 (925)
117 KOG3632|consensus 94.2 0.029 6.3E-07 63.9 2.6 54 180-233 1246-1307(1335)
118 cd01242 PH_ROK Rok (Rho- assoc 94.1 0.65 1.4E-05 39.8 9.9 38 552-589 73-110 (112)
119 cd01254 PH_PLD Phospholipase D 93.8 0.54 1.2E-05 41.6 9.6 33 554-588 89-121 (121)
120 KOG0690|consensus 93.8 0.072 1.6E-06 54.2 4.2 91 500-596 31-123 (516)
121 KOG3565|consensus 93.7 0.1 2.3E-06 59.0 6.0 57 177-233 577-636 (640)
122 PF15410 PH_9: Pleckstrin homo 93.6 0.68 1.5E-05 40.9 9.8 82 500-588 26-117 (119)
123 cd01243 PH_MRCK MRCK (myotonic 92.8 2.3 5E-05 37.1 11.4 39 552-590 77-120 (122)
124 cd01237 Unc112 Unc-112 pleckst 92.7 1.2 2.5E-05 38.2 9.3 36 554-589 66-103 (106)
125 PTZ00267 NIMA-related protein 91.5 2.2 4.7E-05 47.4 12.7 101 484-589 376-476 (478)
126 KOG2059|consensus 91.2 7.1 0.00015 44.0 15.6 99 483-592 563-667 (800)
127 KOG0199|consensus 90.8 0.22 4.8E-06 55.7 3.8 51 179-231 377-430 (1039)
128 PF08239 SH3_3: Bacterial SH3 88.4 0.23 5E-06 37.0 1.2 35 197-231 19-55 (55)
129 KOG3812|consensus 88.2 0.32 7E-06 49.3 2.4 49 179-227 59-117 (475)
130 PLN00188 enhanced disease resi 86.4 4.8 0.0001 45.8 10.5 104 485-592 4-112 (719)
131 KOG0040|consensus 85.9 0.047 1E-06 64.7 -5.5 58 179-236 969-1026(2399)
132 PF15277 Sec3-PIP2_bind: Exocy 85.9 9.5 0.00021 31.9 9.6 70 512-590 20-89 (91)
133 KOG1924|consensus 85.3 75 0.0016 36.7 18.6 35 357-391 786-825 (1102)
134 KOG4384|consensus 85.1 4.9 0.00011 41.5 8.9 61 181-241 139-201 (361)
135 cd01239 PH_PKD Protein kinase 83.0 20 0.00042 31.2 10.3 95 487-588 2-117 (117)
136 KOG3705|consensus 83.0 1.4 3E-05 46.0 4.0 53 180-232 511-565 (580)
137 smart00287 SH3b Bacterial SH3 82.2 1 2.2E-05 34.4 2.2 34 197-230 27-61 (63)
138 PF12814 Mcp5_PH: Meiotic cell 82.1 27 0.00058 30.9 11.5 87 499-589 29-121 (123)
139 KOG3640|consensus 81.5 3.3 7.2E-05 47.9 6.6 90 500-592 1008-1109(1116)
140 KOG1451|consensus 80.4 70 0.0015 35.6 15.6 36 554-589 332-367 (812)
141 PF14603 hSH3: Helically-exten 80.0 1 2.2E-05 36.7 1.5 41 191-231 29-70 (89)
142 PF15406 PH_6: Pleckstrin homo 79.4 3.7 8.1E-05 35.1 4.7 30 555-586 81-110 (112)
143 cd01248 PH_PLC Phospholipase C 79.3 25 0.00054 30.6 10.3 36 552-587 77-114 (115)
144 PRK10884 SH3 domain-containing 77.8 1.4 3.1E-05 42.7 2.1 38 196-233 49-88 (206)
145 cd01240 PH_beta-ARK Beta adren 77.5 6.4 0.00014 33.7 5.5 99 485-594 3-103 (116)
146 PF08458 PH_2: Plant pleckstri 77.0 41 0.00089 29.1 10.4 38 554-593 70-107 (110)
147 cd01259 PH_Apbb1ip Apbb1ip (Am 72.9 12 0.00026 32.4 6.1 100 488-589 3-108 (114)
148 PF15404 PH_4: Pleckstrin homo 67.4 5.2 0.00011 38.1 3.1 24 565-588 161-184 (185)
149 PF06347 SH3_4: Bacterial SH3 67.1 4.1 8.9E-05 30.3 2.0 34 196-230 20-53 (55)
150 smart00743 Agenet Tudor-like d 65.9 3.9 8.5E-05 31.1 1.7 24 196-219 2-25 (61)
151 cd01262 PH_PDK1 3-Phosphoinosi 65.9 57 0.0012 27.1 8.5 84 487-589 3-88 (89)
152 cd01258 PH_syntrophin Syntroph 61.3 17 0.00037 31.4 4.9 36 552-587 72-107 (108)
153 PRK13914 invasion associated s 56.4 7.1 0.00015 42.7 2.2 37 196-232 104-141 (481)
154 cd01231 PH_Lnk LNK-family Plec 54.2 23 0.0005 30.0 4.3 33 554-587 74-106 (107)
155 PF14643 DUF4455: Domain of un 53.9 3.5E+02 0.0075 30.0 15.7 109 268-390 82-195 (473)
156 PF11302 DUF3104: Protein of u 53.8 9.4 0.0002 30.4 1.9 24 195-218 4-33 (75)
157 PF00611 FCH: Fes/CIP4, and EF 53.8 50 0.0011 26.8 6.6 62 270-331 28-90 (91)
158 COG3103 SH3 domain protein [Si 48.2 13 0.00028 36.0 2.3 40 196-235 49-90 (205)
159 KOG3723|consensus 42.0 13 0.00028 40.9 1.3 104 480-592 730-839 (851)
160 PF15408 PH_7: Pleckstrin homo 39.6 30 0.00065 28.2 2.7 34 555-588 62-96 (104)
161 cd01234 PH_CADPS CADPS (Ca2+-d 37.9 45 0.00098 28.4 3.6 26 564-589 85-110 (117)
162 KOG0705|consensus 34.2 31 0.00067 38.2 2.7 36 555-591 446-481 (749)
163 PF12210 Hrs_helical: Hepatocy 33.2 1.4E+02 0.0031 25.1 5.7 50 283-335 2-55 (96)
164 KOG3751|consensus 32.9 1.2E+02 0.0027 33.4 6.8 104 485-589 317-424 (622)
165 KOG3580|consensus 28.0 72 0.0016 35.5 4.1 50 179-228 505-563 (1027)
166 PF06017 Myosin_TH1: Myosin ta 27.8 5.5E+02 0.012 24.6 12.4 97 484-592 49-146 (199)
167 KOG3551|consensus 27.4 95 0.0021 32.8 4.7 38 554-591 236-273 (506)
168 PLN02866 phospholipase D 26.3 3.7E+02 0.0081 32.7 9.8 37 553-591 273-309 (1068)
169 KOG0932|consensus 26.2 1.2E+02 0.0026 33.7 5.4 38 554-592 583-620 (774)
170 KOG2057|consensus 24.6 4.6E+02 0.01 27.1 8.8 17 497-513 189-205 (499)
171 cd07658 F-BAR_NOSTRIN The F-BA 20.3 3.5E+02 0.0077 26.9 7.3 64 271-335 25-88 (239)
No 1
>KOG2070|consensus
Probab=100.00 E-value=2.6e-51 Score=414.79 Aligned_cols=387 Identities=24% Similarity=0.461 Sum_probs=319.0
Q ss_pred eEEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhccccccchhhhhhhhhcCCCccccc
Q psy1488 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRR 257 (630)
Q Consensus 178 ~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~~s~e~~~e~~l~~~~~~~~~~l~~ 257 (630)
...|+|-|+|.+.+.|||+|.+||+|+|+..+++|||+|+++|++||||+|||.++. .++.+......+.+ +.
T Consensus 17 pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik-~e~pLs~~~~~~~~------~~ 89 (661)
T KOG2070|consen 17 PLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK-SEKPLSPKSGTLKS------PP 89 (661)
T ss_pred ceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh-hcCCCCccccCCCC------Cc
Confidence 356889999999999999999999999999999999999999999999999999886 33333321111111 11
Q ss_pred ccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhc
Q psy1488 258 RTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLD 337 (630)
Q Consensus 258 ~~~~~l~~~~~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~ 337 (630)
+.......+..+|.-+++.+|+||+.|++.|+.+...|+.||.. +.+++..++..|.+|+++|+.+|+.|+..|++|.+
T Consensus 90 k~~~t~~~~~~Yr~vVLk~~lesEkey~~eLq~lL~t~L~Plq~-s~iLs~~ey~~LmgNfeeI~t~~qdL~~qlEec~~ 168 (661)
T KOG2070|consen 90 KGFDTTAINKSYRNVVLKNILESEKEYSKELQTLLSTYLRPLQT-SEILSSAEYSYLMGNFEEICTFQQDLVQQLEECTK 168 (661)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccchHHHHHHhcchHHhHhHHHHHHHHHHHhhc
Confidence 11122234567899999999999999999999999999999975 78999999999999999999999999999999986
Q ss_pred cCCCCcCcHHHHHHHhcCCcc-cHHHHhhChHHHHHHHHHHHhCCchHHHHHHHHhhccCCCCCccccchhhhhhhhccH
Q psy1488 338 WDAPYKSCIGETFLKHKSGFR-MYSEYCNSHPMAIATLQELYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYP 416 (630)
Q Consensus 338 ~~~~~~~~ig~vf~~~~~~~~-~Y~~Y~~~~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~ 416 (630)
...+ ..++|.||+..++.|+ +|..||.|||.|+.+|.+. ..+..+|++........ -+-|..=|.+|+.|+-||+
T Consensus 169 ~~~~-q~RVGg~fln~ap~mkt~~~aYcanHP~AV~VL~k~--~dELek~me~Qgasspg-~lvLttgLSkPfrrldkY~ 244 (661)
T KOG2070|consen 169 LPEA-QQRVGGCFLNLAPQMKTLYLAYCANHPSAVNVLTKH--SDELEKFMETQGASSPG-ILVLTTGLSKPFRRLDKYP 244 (661)
T ss_pred Cchh-hhhhhhHHHhhhHHHHHHHHHHHhcCchhhhHHHHh--HHHHHHHHHhcCCCCCC-eEEEecccchHHHHHHHHH
Confidence 4433 4689999999999998 9999999999999999743 33678888887654332 3567778999999999999
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCccEEEeeeEEEEec
Q psy1488 417 LQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTS 496 (630)
Q Consensus 417 LLL~~Llk~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~~~~L~~~~r~ll~~G~l~~~~~ 496 (630)
-||++|.++.+..|||+.+++.++..++++...|.+..+..|- .|.-+...+.+|.|.++. ..+.+|+.|.+.....
T Consensus 245 ~lLQELERhme~~HpDrgD~qrs~avfk~~~~~Cq~lRkqKEl--eLqiLt~~i~~w~g~d~s-~lG~iiymg~v~Vqy~ 321 (661)
T KOG2070|consen 245 TLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQCQELRKQKEL--ELQILTEPIRNWEGDDIS-TLGNIIYMGQVLVQYA 321 (661)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhhcccccccccchhh-hccceEeeeehhhhhc
Confidence 9999999999999999999999999999999999875544432 233345678899998764 4478999999876555
Q ss_pred CcceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHH
Q psy1488 497 GMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLE 576 (630)
Q Consensus 497 ~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ 576 (630)
+....+||+.||.++|++.... .+...|+|.+.+|+..+.|...+|.+. ..++|.|....-++ ++..|..+.
T Consensus 322 ~ad~~dRy~~LF~~~llflsvs-~rMs~fIyegKlp~tG~iV~klEdte~------~~nafeis~~ti~r-Iv~~c~~~~ 393 (661)
T KOG2070|consen 322 GADEKDRYLLLFPNVLLFLSVS-PRMSGFIYEGKLPTTGMIVTKLEDTEN------HRNAFEISGSTIER-IVVSCNNQQ 393 (661)
T ss_pred CcchhhheeeeccceeeeeEec-cccchhhhccccccceeEEeehhhhhc------ccccccccccchhh-eeeccCChH
Confidence 5444599999999999999875 567889999999999999999888663 46788886655444 566799999
Q ss_pred HHHHHHHHHHH
Q psy1488 577 DKARWLAAFQQ 587 (630)
Q Consensus 577 ek~~W~~~L~~ 587 (630)
+-++|+++++.
T Consensus 394 ~l~~wve~ln~ 404 (661)
T KOG2070|consen 394 DLQEWVEHLNK 404 (661)
T ss_pred HHHHHHHHhhh
Confidence 99999999986
No 2
>KOG4424|consensus
Probab=100.00 E-value=9e-47 Score=391.48 Aligned_cols=316 Identities=27% Similarity=0.417 Sum_probs=284.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHH-HHHHHHhhhccCCCCcCc
Q psy1488 267 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSS-FLEDLETKLDWDAPYKSC 345 (630)
Q Consensus 267 ~~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~-ll~~L~~~~~~~~~~~~~ 345 (630)
.+++..|++||+.||+.||+.|..|.++|+.+|.. ...++.+.+..||+||..|+.+|.. ||..|+.+.
T Consensus 64 ~qk~~~iaqEll~tE~~Yv~~L~lLd~~F~~~L~~-~~~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~--------- 133 (623)
T KOG4424|consen 64 LQKLRHIAQELLDTERTYVKRLHLLDQVFCRRLLE-EASIPADVITGLFGNISSIHNFHGQFLLPELEKRI--------- 133 (623)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH---------
Confidence 68899999999999999999999999999999976 3478999999999999999999965 777777664
Q ss_pred HHHHHHHhcCCcccHHHHhhChHHHHHHHHHHHhC-CchHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHHHHHh
Q psy1488 346 IGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQH-NNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLK 424 (630)
Q Consensus 346 ig~vf~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~-~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk 424 (630)
||++|.+++++|++|++|..||++|+.+++.++.. +.|++++++++..+.|.+++|.++|+.|||||+||.|||+++++
T Consensus 134 Iadv~qKlAPFLKmYseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~ 213 (623)
T KOG4424|consen 134 IADVFQKLAPFLKMYSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLL 213 (623)
T ss_pred HHHHHHHhhhHHHHHHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 68999999999999999999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCccEEEeeeEEEEecC-cceeEE
Q psy1488 425 YTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSG-MWTNTI 503 (630)
Q Consensus 425 ~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~~~~L~~~~r~ll~~G~l~~~~~~-~~~~~~ 503 (630)
+++++.+|+.++++|++.|...+.++|..++++|+.++|.+++.++.+ ..+|+.|+|.||++|.+.++... ....+|
T Consensus 214 ~lp~~d~D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~--e~dIV~PsreLiKEG~l~Kis~k~~~~qeR 291 (623)
T KOG4424|consen 214 YLPPDDPDYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGN--EEDIVSPSRELIKEGQLQKISAKNGTTQER 291 (623)
T ss_pred hCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CccccCcHHHHhhccceeeeeccCCCccee
Confidence 999999999999999999999999999999999999999999999987 35799999999999999998765 457899
Q ss_pred EEEEeCCeEEEEEecc-CCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHHHHHHHH
Q psy1488 504 TLFLFDHQLVYCKRDI-LKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWL 582 (630)
Q Consensus 504 ~~fLF~d~Ll~~k~~~-~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek~~W~ 582 (630)
|+|||||++++|+++. ....+|.....+.+.++.+.....+ ..++.|.+.+ +.+.+.|+|.|.++++.|+
T Consensus 292 ylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~~~~-------~~~~tF~~~G--~~r~vel~a~t~~ek~eWv 362 (623)
T KOG4424|consen 292 YLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQEDDNE-------ELPHTFILTG--KKRGVELQARTEQEKKEWV 362 (623)
T ss_pred EEEEehhHHHhhhhhhhcccceeccceeeccCcchhcccccc-------cCCceEEEec--ccceEEeecCchhhHHHHH
Confidence 9999999999999764 2345688888888888887654333 3478888865 6678999999999999999
Q ss_pred HHHHHHHHHHhhcccCCcccC
Q psy1488 583 AAFQQERALVEQDREDGLEFA 603 (630)
Q Consensus 583 ~~L~~a~~~~~~~~~~~~~~~ 603 (630)
+.|..+|+.+.|...+....+
T Consensus 363 ~~I~~~Id~~kq~~eTfr~~s 383 (623)
T KOG4424|consen 363 QAIQDAIDKHKQCRETFRKDS 383 (623)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999887665444
No 3
>KOG3523|consensus
Probab=100.00 E-value=4.8e-40 Score=342.05 Aligned_cols=319 Identities=24% Similarity=0.360 Sum_probs=275.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCCCC
Q psy1488 263 LLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPY 342 (630)
Q Consensus 263 l~~~~~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~~~ 342 (630)
+...+.++|++++|+|.+|-.|++.|++++..|+..-. ....++..+...||+||.+...+++.||.+|+.++.. +..
T Consensus 251 ls~eerklQEa~FEviTSEaSYl~SLnllv~hF~~s~~-l~~~Ls~~d~~~LFSni~~V~~~Serfl~dLE~r~e~-ni~ 328 (695)
T KOG3523|consen 251 LSPEERKLQEAKFEVITSEASYLRSLNLLVDHFMNSKE-LRSTLSASDRHHLFSNIQDVREVSERFLCDLEARLEE-NIF 328 (695)
T ss_pred cCHHHHHHHhhhheeehhhHHHHHHHHHHHHHHhhhHH-HHHhcChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-Cch
Confidence 45678899999999999999999999999999987643 3568899999999999999999999999999999974 456
Q ss_pred cCcHHHHHHHhcCC-cccHHHHhhChHHHHHHHHHHHhCC-chHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHH
Q psy1488 343 KSCIGETFLKHKSG-FRMYSEYCNSHPMAIATLQELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLA 420 (630)
Q Consensus 343 ~~~ig~vf~~~~~~-~~~Y~~Y~~~~~~a~~~l~~~~~~~-~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~ 420 (630)
...|+||..++++. |.+|+.||.|...-..++++++..| .|...++.++..+.|.+++|.+|||.|+|||+||+|||+
T Consensus 329 i~dicDiv~~ha~~~f~vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE~~p~C~~Lpl~SFLiLPmQRITRL~LLl~ 408 (695)
T KOG3523|consen 329 IDDICDIVEDHAAKHFSVYVKYCTNQVYQERTLQRLLTENPAFREVLERLESSPKCQGLPLRSFLILPMQRITRLPLLLD 408 (695)
T ss_pred hhHHHHHHHHhcccccceeehhccchHHHHHHHHHHHhcChHHHHHHHHHhcCccccCCCchhhhhchHHHHHHHHHHHH
Confidence 78899999999975 6799999999999999999999887 799999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCCcccCCccEEEeeeEEEEe-c-
Q psy1488 421 ELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG--WEGEDLIETSSQLIHQGEVIRVT-S- 496 (630)
Q Consensus 421 ~Llk~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~--~~~~~L~~~~r~ll~~G~l~~~~-~- 496 (630)
.|++.|++.+++|+....|+..+..++..||+..++++..+.|..|.++|+. .+..+|+..+|+|++.|+|+.+. .
T Consensus 409 nIl~rt~~~ser~~~a~~Al~av~klVr~CNe~a~rMertEeli~i~~~leF~kvK~~PLiS~sRwLvk~GELt~l~~~~ 488 (695)
T KOG3523|consen 409 NILKRTEEGSERYETATKALKAVSKLVRDCNEGARRMERTEELIRISRQLEFKKVKAFPLVSQSRWLVKRGELTQLVERR 488 (695)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeeeccchhhhhhccccceeeccc
Confidence 9999999999999999999999999999999999999999999999999985 34578999999999999997543 1
Q ss_pred -------CcceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCC-----CcccceeEEEEe---
Q psy1488 497 -------GMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHL-----GVTVRHAIKIHC--- 561 (630)
Q Consensus 497 -------~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~-----g~~~~~~f~I~~--- 561 (630)
+...+..|+|||||+||+||++. ...|.+...-+...+.+..++.. .... ..+.+|.|.+..
T Consensus 489 ~s~~l~~k~~~~~vylfLFnD~Llitk~k~--~~~f~V~Dya~r~~l~ve~~e~~-~~lp~~~~~~~~~~hlF~ltLl~N 565 (695)
T KOG3523|consen 489 ASPLLFSKRLSKTVYLFLFNDLLLITKKKS--EGSFQVFDYAPRSLLQVEKCEPE-LKLPGGANSLSSRPHLFLLTLLSN 565 (695)
T ss_pred ccchhhcccccceeeeeeecceeeEeeecC--CCceEEeeccchhhhhhhhcCcc-cCCCCCCcccccccceEEEehhhc
Confidence 12245899999999999999873 56787777777887777665521 1111 223467787653
Q ss_pred -cCCCeEEEEEeCCHHHHHHHHHHHH
Q psy1488 562 -SDKDKWLLFCCRSLEDKARWLAAFQ 586 (630)
Q Consensus 562 -~~~~~~~~l~a~s~~ek~~W~~~L~ 586 (630)
.++...++|.|.|..|+++|+.+|.
T Consensus 566 ~~~~~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 566 HQGRQTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred cCCCceeeeecCCchHHHHHHHHhcC
Confidence 3445679999999999999999997
No 4
>KOG3520|consensus
Probab=100.00 E-value=1.5e-38 Score=356.03 Aligned_cols=332 Identities=21% Similarity=0.379 Sum_probs=285.8
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhcc
Q psy1488 259 TSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDW 338 (630)
Q Consensus 259 ~~~~l~~~~~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~ 338 (630)
.-..+.+...|||++|+||+.||+..|+.|++|..+|+++|.. ..+++.+++..||.|+++|+++|..|++.|.++...
T Consensus 380 ~L~~lk~~~iKRQEvI~EL~~TE~~HVRTLKIl~~vF~q~m~~-e~~~~~~~l~~LFP~LdeL~eiH~~f~~~lk~rr~e 458 (1167)
T KOG3520|consen 380 VLKGLKKDVVKRQEVIYELFQTERHHVRTLKILDRVFYQPMME-ELLFPQEELNKLFPCLDELIEIHSSFLQRLKERRKE 458 (1167)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 3334556678999999999999999999999999999999975 789999999999999999999999999999998865
Q ss_pred CCCCcCcHHHHHHHhcCC-----c-ccHHHHhhChHHHHHHHHHHHhC-CchHHHHHHHHhhccCCCCCccccchhhhhh
Q psy1488 339 DAPYKSCIGETFLKHKSG-----F-RMYSEYCNSHPMAIATLQELYQH-NNYSKFFEACRLMRGLIEIPLDGYLLTPVQR 411 (630)
Q Consensus 339 ~~~~~~~ig~vf~~~~~~-----~-~~Y~~Y~~~~~~a~~~l~~~~~~-~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQR 411 (630)
+...+..||++++.+++. | ++|..||.++..|++.++.+..+ +.|..|++++..++-|+++.|.+++..-+||
T Consensus 459 ~~~vI~~IGDlLl~~FsGe~ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~p~cRRL~lkd~I~~v~QR 538 (1167)
T KOG3520|consen 459 SLVVIKRIGDLLLDQFSGENAERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESNPVCRRLGLKDCILLVTQR 538 (1167)
T ss_pred ccchHHHHHHHHHHHcCchHHHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcchHHHhhcchHHHHHHHHH
Confidence 554578899999999874 5 49999999999999999988744 5899999999999999999999999999999
Q ss_pred hhccHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CCCCCccc
Q psy1488 412 ICKYPLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG-----------WEGEDLIE 480 (630)
Q Consensus 412 i~rY~LLL~~Llk~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~-----------~~~~~L~~ 480 (630)
|+||||||+.|+|||..+..|++.|+.|++.+++|+..||+.++..|+.++|.+|+.+++. |...+|
T Consensus 539 LTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV~~~E~~~RL~eiq~RlD~~s~~~~~~~~~F~kldL-- 616 (1167)
T KOG3520|consen 539 LTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAVKEAEKKQRLEEIQRRLDAKSLSKYKNGEEFRKLDL-- 616 (1167)
T ss_pred HhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhccccchhhhhhh--
Confidence 9999999999999999999999999999999999999999999999999999999999983 111222
Q ss_pred CCccEEEeeeEEEEecCcceeEEEEEEeCCeEEEEEeccCCCceeEEEe------EeecCcceeeeCCCCCCCCCCcccc
Q psy1488 481 TSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKA------RLNIDTSQIINLPDGKDPHLGVTVR 554 (630)
Q Consensus 481 ~~r~ll~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~------~i~L~~~~v~~~~d~~~~~~g~~~~ 554 (630)
.-|+|||+|.|+......+..+.|++||+|+||+..++ ..+|+|+. .|+|..+.|.++..+ .
T Consensus 617 t~rkLihdG~Ltwk~~~gk~~dv~vlLLtD~LvlLqeq---D~Kyifksl~~~spVisL~~livRevAtd---------~ 684 (1167)
T KOG3520|consen 617 TRRKLIHDGPLTWKTARGKTKDVHVLLLTDILVLLQEK---DQKYIFKSLDKKSPVISLQKLIVREVATD---------E 684 (1167)
T ss_pred hhhheeccCceEEeeccCchhhhHHHHHHHHHHHhhhc---CceeEeeccccCCCceehHHHHHHHHhcc---------c
Confidence 36899999999977666667899999999999999876 45787764 367777755444432 3
Q ss_pred eeEEEEecC--CCeEEEEEeCCHHHHHHHHHHHHHHHHHHhhcccCCcccCHH
Q psy1488 555 HAIKIHCSD--KDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPA 605 (630)
Q Consensus 555 ~~f~I~~~~--~~~~~~l~a~s~~ek~~W~~~L~~a~~~~~~~~~~~~~~~~~ 605 (630)
.+|.|++.. ....|.|.|.|.+||+.|++.|.+++..+..+...++..+..
T Consensus 685 ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~~~~~ip~~~~ 737 (1167)
T KOG3520|consen 685 KAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRNEAAGIPLSNE 737 (1167)
T ss_pred cceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Confidence 556655544 357899999999999999999999999999888766655544
No 5
>KOG3518|consensus
Probab=100.00 E-value=1.9e-38 Score=308.04 Aligned_cols=305 Identities=27% Similarity=0.413 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcC--CCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCCCCcCcHH
Q psy1488 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRN--DMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIG 347 (630)
Q Consensus 270 R~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~--~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~~~~~~ig 347 (630)
-..|+.||++||++||++|+.+++.|+.-+.... -.+.-+.+..+|++|++|+.|+..++.+|+.+-.. ...|+
T Consensus 122 ldriaieildtertyvedl~aiie~yld~i~edqeklkl~ldaisalfg~ie~ifafnkel~n~ldaadld----~v~ia 197 (521)
T KOG3518|consen 122 LDRIAIEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLGLDAISALFGCIEDIFAFNKELLNDLDAADLD----CVAIA 197 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHhhcccc----hHHHH
Confidence 4568999999999999999999999999887422 24568899999999999999999999999987431 23599
Q ss_pred HHHHHhcCCcccHHHHhhChHHHHHHHHHHHhCCchHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHHHHHhcCC
Q psy1488 348 ETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTK 427 (630)
Q Consensus 348 ~vf~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~ 427 (630)
.||......|..|++||.||++.+.+|.++++++-...++++-+.... +.++|.+||++|||||.+|.|+|.+|+++.+
T Consensus 198 ~cfve~s~efe~yieyctny~rmmatl~~~~q~~ilaka~qerq~al~-hsl~l~ayllkpvqrilkyhlfle~i~k~l~ 276 (521)
T KOG3518|consen 198 ECFVEKSEEFEDYIEYCTNYHRMMATLTECMQNKILAKAFQERQEALK-HSLPLGAYLLKPVQRILKYHLFLEEIEKHLD 276 (521)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999877777777665443 4699999999999999999999999999998
Q ss_pred CCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccC----CccEEEeeeEEEEecCccee
Q psy1488 428 TDH--PDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIET----SSQLIHQGEVIRVTSGMWTN 501 (630)
Q Consensus 428 ~~~--~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~~~~L~~~----~r~ll~~G~l~~~~~~~~~~ 501 (630)
.+. +++..++.|.+.|...+.+||+.+++.|...++.+||..+.+|++..|-.+ -+.|+.+|.+-.. +. +.
T Consensus 277 ~~thpeel~qvk~ahd~m~~qa~~indekkkaeh~erlgeiqs~lqkwkadeiqi~dlsaygdllleatfr~a--ga-k~ 353 (521)
T KOG3518|consen 277 KDTHPEELDQVKDAHDTMQRQAAHINDEKKKAEHAERLGEIQSLLQKWKADEIQIPDLSAYGDLLLEATFRIA--GA-KN 353 (521)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccCCchhhhHHHHHHHHHHHh--cc-cc
Confidence 764 568899999999999999999999999999999999999999999654333 3566666665321 22 35
Q ss_pred EEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEe-cCCCeEEEEEeCCHHHHHH
Q psy1488 502 TITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHC-SDKDKWLLFCCRSLEDKAR 580 (630)
Q Consensus 502 ~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~-~~~~~~~~l~a~s~~ek~~ 580 (630)
+|.+|||+.+|+++|++ ...|++|..|-..++.++++.--+ -+..|.+.+ ..+...++|.|.|.++|..
T Consensus 354 ~rllflfdellli~kkr---~anf~~k~~ilc~nlmlne~icpe-------eplsfqv~~fdnpkaq~~fma~sme~kr~ 423 (521)
T KOG3518|consen 354 ERLLFLFDELLLITKKR---DANFTCKAHILCGNLMLNEVICPE-------EPLSFQVFHFDNPKAQHTFMAKSMEDKRL 423 (521)
T ss_pred cchHHHHHhHHhheeec---CCceeeehhhhccchhhheeccCC-------CCceeEEEecCCcchhhhhhhhhhHHHHH
Confidence 89999999999999976 678999999988888776543221 145676654 4455678999999999999
Q ss_pred HHHHHHHHHHHH
Q psy1488 581 WLAAFQQERALV 592 (630)
Q Consensus 581 W~~~L~~a~~~~ 592 (630)
|+..|.+.+-..
T Consensus 424 wm~elkrlildh 435 (521)
T KOG3518|consen 424 WMLELKRLILDH 435 (521)
T ss_pred HHHHHHHHHHhh
Confidence 999998877543
No 6
>KOG2996|consensus
Probab=100.00 E-value=2.1e-37 Score=319.05 Aligned_cols=320 Identities=23% Similarity=0.406 Sum_probs=266.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCCCCcC
Q psy1488 265 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKS 344 (630)
Q Consensus 265 ~~~~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~~~~~ 344 (630)
....||...+.||.+||+.|++.|..|.+.|+.||+ .+|++.+++.||.||++|..+|..||.+|+..+...+ .+
T Consensus 193 te~dkRncClrEi~~TE~kY~~tL~sI~k~f~~PLk---~~l~~ad~~ivFiNieel~klHt~ll~ei~~sv~v~~--~q 267 (865)
T KOG2996|consen 193 TETDKRNCCLREIQQTEEKYTQTLESIEKTFMEPLK---RFLPPADYNIVFINIEELNKLHTALLAEIEYSVKVAG--GQ 267 (865)
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCChhhhheeEecHHHHHHHHHHHHHHhHHHhhCCC--cc
Confidence 446789999999999999999999999999999996 4899999999999999999999999999999885433 36
Q ss_pred cHHHHHHHhcCCcccHHHHhhChHHHHHHHHHHHhCC-chHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHHHHH
Q psy1488 345 CIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELL 423 (630)
Q Consensus 345 ~ig~vf~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~-~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Ll 423 (630)
.+++||+++.+.|-+|..||++.+.|.+.++.+.+.+ .+..-+++|........+.|.++|..|+||+.+|+|||++|+
T Consensus 268 tl~qVFikyker~liYG~YCS~~e~a~k~ln~llktrEdv~~kleEct~r~nngkF~l~DLL~VPmQRvlKYhLLLkEL~ 347 (865)
T KOG2996|consen 268 TLYQVFIKYKERLLIYGKYCSNVESARKLLNELLKTREDVSRKLEECTARANNGKFTLRDLLVVPMQRVLKYHLLLKELV 347 (865)
T ss_pred cHHHHHHHHHHHHhhhhhhhccchHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCceeeceeeeeeHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999998877 568888999887776789999999999999999999999999
Q ss_pred hcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCccEEEeeeEEEEe-cCcceeE
Q psy1488 424 KYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVT-SGMWTNT 502 (630)
Q Consensus 424 k~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~~~~L~~~~r~ll~~G~l~~~~-~~~~~~~ 502 (630)
|+|....++ ..|+.|+++|++++..||+.+|+.+.+..+.++|..|++... +|..-+ +.-..|++.... ....+++
T Consensus 348 kht~~a~ek-~~LkeAleaM~Dla~yiNEvkRD~etlr~I~efq~SIenL~~-pl~~~G-RpkiDGElki~s~~~~tkqd 424 (865)
T KOG2996|consen 348 KHTDEASEK-RNLKEALEAMEDLAQYINEVKRDNETLRVIDEFQLSIENLSQ-PLHDFG-RPKIDGELKITSTQAHTKQD 424 (865)
T ss_pred HhcccCChh-hhHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhHHhhcc-hHHHhC-CCCcCceEEEeehhcCCccc
Confidence 999865554 499999999999999999999999999999999999998653 344443 345577775433 2344679
Q ss_pred EEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCC---CCCCcccceeEEEEecCCCeEEEEEeCCHHHHH
Q psy1488 503 ITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKD---PHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKA 579 (630)
Q Consensus 503 ~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~---~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek~ 579 (630)
||+|||+.++|+||++ +..|..+..+.|....+.+.+-++. ...+.+-.+.|.|.......-+.|.|.+.+-|+
T Consensus 425 RyiFLfDkvviVCKrk---G~sy~lke~i~l~~y~m~d~~~~~kd~kk~~~~~ws~~f~lI~tqg~ngl~fy~Kte~~kk 501 (865)
T KOG2996|consen 425 RYIFLFDKVVIVCKRK---GDSYELKEIIYLNAYKMSDDPIDDKDNKKVSTITWSYGFYLIHTQGRNGLEFYCKTEDLKK 501 (865)
T ss_pred eEEeEecceEEEeecc---CcchhHHHHHHHHhhccccCCCCchhhhhccceeeeeeEEEEEEcCCcceEEEEecHHHHH
Confidence 9999999999999986 5566666666555555444332211 113555667788777655567999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy1488 580 RWLAAFQQERALVEQD 595 (630)
Q Consensus 580 ~W~~~L~~a~~~~~~~ 595 (630)
.||+.+..|+..+.-+
T Consensus 502 kWmeqfema~SNi~Pd 517 (865)
T KOG2996|consen 502 KWMEQFEMAKSNISPD 517 (865)
T ss_pred HHHHHHHHHHhcCCcc
Confidence 9999999999876543
No 7
>KOG4305|consensus
Probab=100.00 E-value=5.1e-38 Score=351.04 Aligned_cols=385 Identities=19% Similarity=0.262 Sum_probs=305.3
Q ss_pred CCCCCCEEEEEEecCCCcccccCCCccccccccchhhccccccchhhhhhhhhcCCCcccccccccCCCChHHHHHHHHH
Q psy1488 196 GFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVR 275 (630)
Q Consensus 196 ~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~~s~e~~~e~~l~~~~~~~~~~l~~~~~~~l~~~~~kR~~ii~ 275 (630)
++..+.++.........||+++.+|..+-+++ + .++..-|. ..........+.+.|.|||++|.
T Consensus 278 s~~cysiscp~~leq~~~~~~k~~~~~~~~~s---~----d~~~~~W~---------~s~d~~~le~ls~rEikRQe~I~ 341 (1029)
T KOG4305|consen 278 SLLCYSISCPRRLEQQARLELKLSSGLKRSSS---E----DEEEKLWS---------ESVDLSVLESLSPREIKRQEAIF 341 (1029)
T ss_pred hhhcccccCccccccchhhhhccchhhcCCCC---c----cccchhhh---------hcCchHhHhhcCHHHhhhhheeE
Confidence 66677777777888889999999988888777 1 11111110 00111223345678999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHH----HHHHhcCHHHHHHHHHHHHHHHHhhhccCCCCcCcHHHHHH
Q psy1488 276 ELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQ----IQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFL 351 (630)
Q Consensus 276 ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~----~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~~~~~~ig~vf~ 351 (630)
||+.||++||++|+.+.+.|.+||.+ ..++++++ +..+|+|+++|+.+|+.||.+|..+....+ .+..||++|+
T Consensus 342 Eli~tE~d~v~dLel~re~y~kpl~~-S~iipE~~~~~Fi~~vF~n~~~ii~ln~~LL~aL~~r~k~~G-~V~~IGdIll 419 (1029)
T KOG4305|consen 342 ELIYTEEDFVADLELAREIYRKPLLE-SSIIPEQERAEFIAHVFGNIEEIIQLNEKLLKALRVRQKLSG-VVEGIGDILL 419 (1029)
T ss_pred EEEeehhHHHHHHHHHHHHHhChHhh-hccCccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccCC-ccchHHHHHH
Confidence 99999999999999999999999987 57888777 999999999999999999999999987655 6789999999
Q ss_pred HhcCCcccHHHHhhChHHHHHHHHHHHhC-CchHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHHHHHhcC-CCC
Q psy1488 352 KHKSGFRMYSEYCNSHPMAIATLQELYQH-NNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYT-KTD 429 (630)
Q Consensus 352 ~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~-~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t-~~~ 429 (630)
+|++.|+.|..||.+++.|..+++..++. ..|++|+..|+..+.+.+++|.+||.+|+||+.||||||++||||| |.+
T Consensus 420 ~~lp~~~~yi~Y~a~q~~ak~lie~k~k~n~~Fa~fl~~~~~sp~~rkl~L~~FL~kp~sRl~RYpLllr~ILk~TdP~n 499 (1029)
T KOG4305|consen 420 AWLPKAEPYISYGANQAYAKALIEQKKKQNPRFARFLKECESSPESRKLDLVSFLTKPTSRLQRYPLLLREILKHTDPEN 499 (1029)
T ss_pred HHhhhhhHHHHHHhhhHHHHHHHHHHhccCchHHHHHHHHHhChhhhccchhhhhccccchhheeeHHHHHHHhcCCCCC
Confidence 99999999999999999999999977555 4899999999999999999999999999999999999999999999 777
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCcccCCccEEEeeeEEEEecC--cceeEE
Q psy1488 430 HPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEG----EDLIETSSQLIHQGEVIRVTSG--MWTNTI 503 (630)
Q Consensus 430 ~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~~----~~L~~~~r~ll~~G~l~~~~~~--~~~~~~ 503 (630)
|+|+..|.+|++.++.++.++|....+.|+..++.+++..+..-.+ ..+..+.|.|++.|.+.+.... .+...-
T Consensus 500 ~~D~q~L~~aI~~ir~l~~~iN~~~g~aen~~~l~~l~~qllfe~~e~~~L~l~d~~R~l~fkgil~~~~~~~~~~~~~~ 579 (1029)
T KOG4305|consen 500 HPDLQLLKKAIEIIRGLLSEINQGSGEAENRCRLEELSQQLLFEPGEAVNLGLNDPERKLIFKGILKRKELSKTDGTKED 579 (1029)
T ss_pred CccHHHHHHHHHHHHHHHHHhChhhccchhhhhHHHHHHHhhccccccccccccChhhhcceeeeeeeccccccCCCccc
Confidence 8999999999999999999999999999999999999988863212 3355678999999998754322 112234
Q ss_pred EEEEeCCeEEEEEeccC---CCceeEEEeEeecCcceeeeCCCCCC--------CC----------CCcccceeEEEEec
Q psy1488 504 TLFLFDHQLVYCKRDIL---KRNTHVYKARLNIDTSQIINLPDGKD--------PH----------LGVTVRHAIKIHCS 562 (630)
Q Consensus 504 ~~fLF~d~Ll~~k~~~~---~~~~~~~k~~i~L~~~~v~~~~d~~~--------~~----------~g~~~~~~f~I~~~ 562 (630)
|.|||+|.+|++.+... .....+|+.+|||+.+.+....|... +. .....++.|.+..+
T Consensus 580 ~~fLl~d~lLLt~~~k~~~~~~~~kvf~RPiPl~lL~~~~~~dn~~~k~Y~sp~~~~~~~v~l~~~~~s~~~~~~~~~~g 659 (1029)
T KOG4305|consen 580 YIFLLLDNLLLTRKVKQNNKRHRHKVFSRPIPLDLLSLSPSEDNPSYKSYKSPIPLASVTVALPDKPTSNVKNFFLYLGG 659 (1029)
T ss_pred eeehhhhhhhhhhhhhhccccccceeeccCcchhhhcccccccchhhhccCCCCcchhhhhhcccCCCCCccchhheecc
Confidence 88888888887765322 12345778888988887763333100 00 01112333444455
Q ss_pred CCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhhcccC
Q psy1488 563 DKDKWLLFCCRSLEDKARWLAAFQQERALVEQDRED 598 (630)
Q Consensus 563 ~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~~~~~~~ 598 (630)
..+..|++.+.+..+++.|++++.++++...+....
T Consensus 660 a~~~~ftly~~s~~~r~~w~ekI~~aq~~~le~~~~ 695 (1029)
T KOG4305|consen 660 ARGASFTLYAESLNGRDQWVEKIKQAQKRSLERNDV 695 (1029)
T ss_pred ccceEEEeeccchHHhhhHHhhhhHHHHhhhhhhcc
Confidence 667899999999999999999999999887666543
No 8
>KOG3521|consensus
Probab=100.00 E-value=3.7e-33 Score=292.16 Aligned_cols=326 Identities=23% Similarity=0.361 Sum_probs=262.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh--cCCCCCHHHHHHHhcCHHHHHHHHHHHHHH-HHhhh---
Q psy1488 263 LLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR--RNDMFSPEQIQTIFGNLEDILAFQSSFLED-LETKL--- 336 (630)
Q Consensus 263 l~~~~~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~--~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~-L~~~~--- 336 (630)
+.....+.|++|+||+.||..||+.|..+.+.|+--|.+ ..+++..-+-..+|+|+..|++.|..|... |.-.+
T Consensus 171 lS~~~~kqQeAiWELvtTE~~YIrkL~~~tdlllacL~nlQe~GlL~dVeaerlFsNv~~l~~~n~slW~~~l~P~laks 250 (846)
T KOG3521|consen 171 LSDKSCKQQEAIWELVTTEFRYIRKLLRYTDLLLACLLNLQECGLLKDVEAERLFSNVPTLFNVNRSLWLQVLEPILAKS 250 (846)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999999999999999999888666543 467888888899999999999999987554 33222
Q ss_pred -ccCCCC-cCcHHHHHHHhcCCcccHHHHhhChHHHHHHHHHHHhCC-chHHHHHHHHhhccCCCCCccccchhhhhhhh
Q psy1488 337 -DWDAPY-KSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRIC 413 (630)
Q Consensus 337 -~~~~~~-~~~ig~vf~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~-~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~ 413 (630)
....+. ...+-.-|+.+..-|..|..||..+..++..++++.+++ -|.+|+.+|+..+.|.++.|.+.|++|+|||+
T Consensus 251 r~TgepLd~~~lq~GFl~f~s~f~pY~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ekqk~c~RqkL~D~l~kPmQRLT 330 (846)
T KOG3521|consen 251 RETGEPLDPNYLQNGFLDFGSWFRPYTNYCLEHSDCMKYIRELLKENELFRAFVTWAEKQKNCDRQKLIDTLSKPMQRLT 330 (846)
T ss_pred HhhCCCCChHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHhhhhhhhHHHHHHhhhHHHHhh
Confidence 111111 223666789999999999999999999999999988877 69999999999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-----------------
Q psy1488 414 KYPLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGE----------------- 476 (630)
Q Consensus 414 rY~LLL~~Llk~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~~~----------------- 476 (630)
||+|||+.++|+|+ +..+.+.|...+..++.++.+||...+..+..++|..+..+|++++-.
T Consensus 331 KY~LLLkAVlK~t~-d~~e~Eai~aMi~svEsf~~~vN~~l~qrqererL~~vm~rIe~ydvVd~~sdevdknLK~~~~~ 409 (846)
T KOG3521|consen 331 KYPLLLKAVLKVTT-DEREREAISAMIDSVESFTAHVNKELRQRQERERLAAVMRRIEGYDVVDQDSDEVDKNLKLFLNL 409 (846)
T ss_pred hhHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccCCcHHHHHHHhhhhhhh
Confidence 99999999999997 567888999999999999999999999999999999999999986431
Q ss_pred -Cccc--------CCccEEEeeeEEEEecC-cceeEEEEEEeCCeEEEEEeccC-CCceeEEEeEeecCcceeeeCCCCC
Q psy1488 477 -DLIE--------TSSQLIHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDIL-KRNTHVYKARLNIDTSQIINLPDGK 545 (630)
Q Consensus 477 -~L~~--------~~r~ll~~G~l~~~~~~-~~~~~~~~fLF~d~Ll~~k~~~~-~~~~~~~k~~i~L~~~~v~~~~d~~ 545 (630)
+|.. ..|.||++|++.. +.| ..+.++|||||+|+||+||+... .....+++.++-++.+.+....|-
T Consensus 410 ~Dl~apm~g~~~~htRqLlleGdlrm-Kegk~sK~DVhcfLfTDllLVcK~v~k~~drlKVIRpPll~dklv~q~~~dp- 487 (846)
T KOG3521|consen 410 LDLTAPMHGRKPEHTRQLLLEGDLRM-KEGKGSKADVHCFLFTDLLLVCKKVQKKADRLKVIRPPLLMDKLVCQYLRDP- 487 (846)
T ss_pred hccccCCCCCChhhhhhhhhccceec-ccCCCcccceeeeeehhHHHHhHHHhhhcccceeeccchhhcceeeeecCCC-
Confidence 1111 1389999999954 444 44669999999999999997533 234567888898998888777662
Q ss_pred CCCCCcccceeEEEEec----CCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhhcccCCc
Q psy1488 546 DPHLGVTVRHAIKIHCS----DKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGL 600 (630)
Q Consensus 546 ~~~~g~~~~~~f~I~~~----~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~~~~~~~~~ 600 (630)
+.|.+..- .-...|++.|..++++.+|++.|..|+..+++-.....
T Consensus 488 ---------nsf~lVhLtEFh~a~~ayt~hcs~p~d~~~W~D~l~~Aq~~~QkLkr~~~ 537 (846)
T KOG3521|consen 488 ---------NSFLLVHLTEFHTAQAAYTMHCSGPEDTLRWTDMLKMAQDELQKLKRDEW 537 (846)
T ss_pred ---------CceEEEeechhhhhhhhheeecCChhhHHHHHHHHHHHHHHHHHHhcccC
Confidence 33333221 12346999999999999999999999988776654443
No 9
>KOG3519|consensus
Probab=100.00 E-value=1e-33 Score=322.50 Aligned_cols=438 Identities=34% Similarity=0.467 Sum_probs=338.7
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhccccccchhhhhhh-hhcCCCcc-cc
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAA-LASGGSKT-LR 256 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~~s~e~~~e~~l~~-~~~~~~~~-l~ 256 (630)
..+.+++.-......++.|.+++...+++..-..||.+.. .+||+....+.+............. ........ ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~rl~i~~~~~~~~~~~~~~~~~~~~~~~~ 323 (756)
T KOG3519|consen 247 VEAPALKRVVRADMRELGLEKLDAKTVLDESVAEESSGRT---MTLFASESERLIINQKLELLSAPTGPVESAPSDYDGY 323 (756)
T ss_pred ccccccccceecccccchhhhhhccccchhhhhhhhcccc---chhchhhhhcchhhhhhhccccccCcccCcccccchh
Confidence 4456667777778889999999999999988878887764 6777776666554332211110000 00000000 00
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhh
Q psy1488 257 RRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKL 336 (630)
Q Consensus 257 ~~~~~~l~~~~~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~ 336 (630)
............+|.++|.|+++||+.|+++|..++..|+.++.+....++.+.+..+|+|+++|+.||..||..|+..+
T Consensus 324 ~~~~~~~~~~~~~~~~vi~E~l~tE~~Yv~~L~~~~~~yl~~~~k~~~~~~~~~~~~~f~ni~~i~~f~~~fl~~L~~~~ 403 (756)
T KOG3519|consen 324 LDAMRPSESLDKKRTKVIKELLDTEKNYVKDLNALCEGYLPPQNKRARGLSVNQLDLLFGNIEDILRFQKEFLKTLEQQI 403 (756)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhccccHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence 00000112456789999999999999999999999999999976667789999999999999999999999999999998
Q ss_pred ccC--CCCcCcHHHHHHHhcCCcccHHHHhhChHHHHHHHHHHHhCCchHHHHHHHHhhccCCCCCccccchhhhhhhhc
Q psy1488 337 DWD--APYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICK 414 (630)
Q Consensus 337 ~~~--~~~~~~ig~vf~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~r 414 (630)
... .+....||.+|+.+.+.|.+|.+||++|+.+...+.++++++.+..|++.|.........+|++||++|+||+++
T Consensus 404 ~~~~~~~~~~~ig~~fL~~~~~f~~ys~yc~~h~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~L~s~l~~pvqri~k 483 (756)
T KOG3519|consen 404 NPELIPPSLSEIGPVFLEQLDVFKIYSEYCNNHPKAQKKLSKLKKKKKVKEFLEACNLLQQHSNSSLSSFLLKPVQRICK 483 (756)
T ss_pred chhhcchhHhHHHHHHHHhcccceeechhhhccchHHHHHHHHhhhhhhhhhhhhhhhhhccccCCchhhhccHHHHhcc
Confidence 644 455678999999999999999999999999999999999999999999999988877779999999999999999
Q ss_pred cHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh---hcCCCCCCcccCCccEEE
Q psy1488 415 YPLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMES----LEKLAAWQQR---VEGWEGEDLIETSSQLIH 487 (630)
Q Consensus 415 Y~LLL~~Llk~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~----~~~l~~l~~~---i~~~~~~~L~~~~r~ll~ 487 (630)
|||+|+++++.|+..+.||..|..|+.+|+.+...||++++..+. ...+...+.. +..|++..+...+..++.
T Consensus 484 YPLll~elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~~~~e~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~Ss~l~~ 563 (756)
T KOG3519|consen 484 YPLLLNELLDSTPLESSDYVPLSAALPAMKTVASLINEMKRKLESYSSFLDKIAAEQSGSNSLELSEGELLLDNSSELLL 563 (756)
T ss_pred CchhhhhhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhhccccchhHHHHHhhhhhccchhhhccCCCcccccccceee
Confidence 999999999999999999999999999999999999999999998 6666665555 778888888888999999
Q ss_pred eeeEEEEecC-cceeEEEEEEeCCeEEEEEeccCCCceeE-EEeEeecCcceeeeCCCCCCCCCCcccceeEEEEec--C
Q psy1488 488 QGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHV-YKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCS--D 563 (630)
Q Consensus 488 ~G~l~~~~~~-~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~-~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~--~ 563 (630)
.+...+.... .+...++.|||+..+++|+.....+..+. |+.....+.+.+.+..++.....+....+++..... .
T Consensus 564 ~~~~~~~~q~~~~~~~~~~~l~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (756)
T KOG3519|consen 564 SGPSLKIRQFQSDSQQRQFFLFDNQLVYCKRSSTSRSLLPSFRPRLASDSVDPFDNDGTKPADILVSRDNAFAGASLSTL 643 (756)
T ss_pred ccchhhhhhhhcchhhhhheecccceeEeeccccccccccccCccccccccccccccccCccchhhhhhhhhhccccccC
Confidence 9998755332 33467899999999999998766665555 677777887777777766654444444444443221 1
Q ss_pred CCeEEEEEeCCHHHHHHHHHHHHHHHHHHhhcccCCcccCHHHHHHHHHHHhhhhc
Q psy1488 564 KDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHS 619 (630)
Q Consensus 564 ~~~~~~l~a~s~~ek~~W~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 619 (630)
.....+....+......|+..-.....+..-+...+..+.++......++++..+.
T Consensus 644 ~~~i~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~i~e~~~~q~~l~~~~~~~ 699 (756)
T KOG3519|consen 644 TSEIHTSSNSSITPSSPLLRATANEKSNTQLSKETGSLIYEEERNQSPLEAAIEKK 699 (756)
T ss_pred cchhcccccccCCCCCceeeehhcccccccccccccchHHHhhhhhHHHHHHHhhh
Confidence 22344555666777778887777777777777777777778877777777665533
No 10
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=99.97 E-value=3e-31 Score=254.44 Aligned_cols=180 Identities=37% Similarity=0.668 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCCCCcCcHHHHHHH
Q psy1488 273 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLK 352 (630)
Q Consensus 273 ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~~~~~~ig~vf~~ 352 (630)
||+||++||+.||++|..+.+.|+.++....+.++..++..||+|+++|+.+|+.|+.+|+++...+......||++|++
T Consensus 1 ii~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~~f~~ 80 (180)
T smart00325 1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKLLSPNELETLFGNIEEIYEFHRDFLDELEERIEEWDDSPERIGDVFLK 80 (180)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 58999999999999999999999999987544889999999999999999999999999999986443345789999999
Q ss_pred hcCCcccHHHHhhChHHHHHHHHHHHhCCchHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHHHHHhcCCCCCcc
Q psy1488 353 HKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPD 432 (630)
Q Consensus 353 ~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~~~d 432 (630)
+.+.|+.|..||.+++.+...+.++.+++.|..|++.+.....+.+++|.+||++|||||+||++||++|+|+|+++|+|
T Consensus 81 ~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~L~~PvqRl~rY~lll~~l~k~t~~~~~d 160 (180)
T smart00325 81 LEEFFKIYSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCRRLTLESLLLKPVQRLTKYPLLLKELLKHTPEDHED 160 (180)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhcChhHHHHHHHHhCChhhccCCHHHHHhHHHHHhccHHHHHHHHHHhCCCCCCC
Confidence 98888999999999999999999966667899999999988777779999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy1488 433 YVKITEALEAMRDVAMLINE 452 (630)
Q Consensus 433 ~~~L~~A~~~i~~l~~~vne 452 (630)
+..|++|++.++.++..||+
T Consensus 161 ~~~l~~a~~~~~~~~~~iNe 180 (180)
T smart00325 161 REDLKKALKAIKELANQVNE 180 (180)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999985
No 11
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=99.97 E-value=1e-30 Score=250.98 Aligned_cols=179 Identities=38% Similarity=0.650 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCC-CCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCCCCcCcHHH
Q psy1488 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDM-FSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGE 348 (630)
Q Consensus 270 R~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~-l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~~~~~~ig~ 348 (630)
|+.+++||++||++||++|+.+.+.|+.++.. ... ++.+++..||+|+++|+.+|+.|+.+|+.+...+......||+
T Consensus 1 r~~vi~Eli~tE~~Yv~~L~~l~~~y~~~l~~-~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~ 79 (181)
T cd00160 1 RQEVIKELLQTERNYVRDLKLLVEVFLKPLDK-ELLPLSPEEVELLFGNIEEIYEFHRIFLKSLEERVEEWDKSGPRIGD 79 (181)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccCcccchHHH
Confidence 67899999999999999999999999999976 333 8899999999999999999999999999998644323567999
Q ss_pred HHHHhcCCcccHHHHhhChHHHHHHHHHHHhC-CchHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHHHHHhcCC
Q psy1488 349 TFLKHKSGFRMYSEYCNSHPMAIATLQELYQH-NNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTK 427 (630)
Q Consensus 349 vf~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~-~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~ 427 (630)
+|+++.+.+++|..||.+|+.+...+.++++. +.|..|++.++. ...+++|.+||++|||||+||++||++|+|+|+
T Consensus 80 ~f~~~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~--~~~~~~l~~~L~~PvQRl~rY~lLL~~l~k~t~ 157 (181)
T cd00160 80 VFLKLAPFFKIYSEYCSNHPDALELLKKLKKFNKFFQEFLEKAES--ECGRLKLESLLLKPVQRLTKYPLLLKELLKHTP 157 (181)
T ss_pred HHHHhhhHHHHHHHHHhChHHHHHHHHHHHHccHHHHHHHHHHHH--hcccCCHHHHhhhhHHHhchHHHHHHHHHHhCC
Confidence 99999998899999999999999999998864 579999998886 456799999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHH
Q psy1488 428 TDHPDYVKITEALEAMRDVAMLIN 451 (630)
Q Consensus 428 ~~~~d~~~L~~A~~~i~~l~~~vn 451 (630)
++|+|+..|+.|++.++.++..||
T Consensus 158 ~~~~d~~~l~~a~~~~~~~~~~iN 181 (181)
T cd00160 158 DGHEDREDLKKALEAIKEVASQVN 181 (181)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999887
No 12
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=99.96 E-value=4.3e-28 Score=232.07 Aligned_cols=179 Identities=35% Similarity=0.661 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCCCCcCcHHHHHHH
Q psy1488 273 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLK 352 (630)
Q Consensus 273 ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~~~~~~ig~vf~~ 352 (630)
||+||++||+.|+.+|+.+.+.|+.++....+.++..++..||+|+++|+.+|+.|+..|+..+. +......||++|++
T Consensus 1 vi~ELi~tE~~y~~~L~~l~~~~~~~l~~~~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~~~~-~~~~~~~i~~if~~ 79 (180)
T PF00621_consen 1 VINELIETERSYVEDLEILVEVFLKPLRKRSPLLSEDEIKSLFGNIEELIEIHQQLLESLEERMK-EWSNIQSIGDIFLK 79 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTSSGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHhcchhhhhhHHHHHHHHHHHHHH-hhhccchhhhhhhh
Confidence 68999999999999999999999999975467888999999999999999999999999999873 33556789999999
Q ss_pred hcCCcccHHHHhhChHHHHHHHHHHHhCCc-hHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHHHHHhcCCCCCc
Q psy1488 353 HKSGFRMYSEYCNSHPMAIATLQELYQHNN-YSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHP 431 (630)
Q Consensus 353 ~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~-f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~~~~ 431 (630)
+.+.+.+|..||.+|+.+...++++.+.+. |..|++.++..+....+++.++|.+|+|||+||+++|++|+++|+++|+
T Consensus 80 ~~~~~~~Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~Piqrl~rY~lll~~llk~t~~~~~ 159 (180)
T PF00621_consen 80 FEPFLKVYISYCSNYPDALSLLEELRKKNSEFKKFLEEIENSPESKRLSLSSLLIKPIQRLPRYPLLLKRLLKNTPPDHP 159 (180)
T ss_dssp HTTGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHCTTSTHHHHTTHHHHHHHHHHHHHHHHHHTSSTTST
T ss_pred ccccccceeccchheechhhhhhHHHhhccccccccccccccccccCCCHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCh
Confidence 667777999999999999999999887764 9999999988767778999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q psy1488 432 DYVKITEALEAMRDVAMLINE 452 (630)
Q Consensus 432 d~~~L~~A~~~i~~l~~~vne 452 (630)
|+..|+.|+..++++...+|+
T Consensus 160 d~~~L~~a~~~i~~l~~~in~ 180 (180)
T PF00621_consen 160 DYKSLQKALDQIKELIQHINE 180 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999996
No 13
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
Probab=99.95 E-value=3e-28 Score=261.82 Aligned_cols=339 Identities=22% Similarity=0.360 Sum_probs=275.2
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCC----HHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q psy1488 260 SISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS----PEQIQTIFGNLEDILAFQSSFLEDLETK 335 (630)
Q Consensus 260 ~~~l~~~~~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~----~~~~~~iF~ni~~I~~~h~~ll~~L~~~ 335 (630)
..++.+++.|||++|.|++-||++||++|+.+.+.|+++|.. ..+|+ .+.++.+|.|+.+|+.++.+|+..|..+
T Consensus 475 ~~sl~~qe~kRqe~I~evi~ter~FVk~le~lRD~~~K~L~~-sn~Ip~n~r~~Fik~vf~~i~~i~avn~k~~~AL~~r 553 (1175)
T COG5422 475 WESLPKQEIKRQEAIYEVIYTERDFVKDLEYLRDTWIKPLEE-SNIIPENARRNFIKHVFANINEIYAVNSKLLKALTNR 553 (1175)
T ss_pred HhhCcHHHHhhhhhhhheeeeccchhhhhHHHHHHHHHHHHH-cCcCchhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Confidence 445678889999999999999999999999999999999976 55665 3467899999999999999999999988
Q ss_pred hccCCCCcCcHHHHHHHhcCCcccHHHHhhChHHHHHHHHHHHhC-CchHHHHHHHHhhccCCCCCccccchhhhhhhhc
Q psy1488 336 LDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQH-NNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICK 414 (630)
Q Consensus 336 ~~~~~~~~~~ig~vf~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~-~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~r 414 (630)
+.. .|.+..|||+|+++++.|+.+..|..+.+.|...++..... +.|..|...+.......++.++.||.+|+.|+.|
T Consensus 554 Q~l-sPiv~~I~DifL~~vP~Fepfiky~a~~~yaky~~erekS~np~fa~Fd~~v~rl~~s~k~~ld~yLtk~~tr~~R 632 (1175)
T COG5422 554 QCL-SPIVNGIADIFLDYVPKFEPFIKYGASQPYAKYEFEREKSVNPNFARFDHEVERLDESRKLELDGYLTKPTTRLAR 632 (1175)
T ss_pred ccc-cccccchHHHHHhhhhhhhHHHHhhcccchhheeeeeccccCcchhhhhHHHHhcchhhhhcccceecCCcccchh
Confidence 753 45577899999999999999999999999999988865554 4789998888765555678899999999999999
Q ss_pred cHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCCcccCCccEEEeeeE
Q psy1488 415 YPLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWE---GEDLIETSSQLIHQGEV 491 (630)
Q Consensus 415 Y~LLL~~Llk~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~---~~~L~~~~r~ll~~G~l 491 (630)
|+||+++++++|.++.+|+++|-++++.++++...+|-....+++...+..+.+.|...+ ...+.+..|++|+.|.+
T Consensus 633 y~lL~e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~~esG~Ae~r~~~~~l~qql~fk~e~~~lgl~D~~rkii~kgvl 712 (1175)
T COG5422 633 YPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNFESGKAENRGDLFHLNQQLLFKPEYVNLGLNDEYRKIIFKGVL 712 (1175)
T ss_pred hHHHHhhhcccCCCCCcchhHhHHHHHHHHHHHHHHhHhhcccccchhhhhhhhhhccCchhhcccccchhHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999988888877775322 13466778999999998
Q ss_pred EEEec----CcceeEEEEEEeCCeEEEEEeccC--CCceeEEEeEeecCcceeeeCCCCCCC-------C---------C
Q psy1488 492 IRVTS----GMWTNTITLFLFDHQLVYCKRDIL--KRNTHVYKARLNIDTSQIINLPDGKDP-------H---------L 549 (630)
Q Consensus 492 ~~~~~----~~~~~~~~~fLF~d~Ll~~k~~~~--~~~~~~~k~~i~L~~~~v~~~~d~~~~-------~---------~ 549 (630)
.+... +....+.++||++++|++||.+.. .+...+++.+|||..+.+...+|.-+. . +
T Consensus 713 k~ka~~~td~s~~~di~f~llDn~ll~~Kak~vnkw~~hkvfqrpipl~ll~i~~~eDsp~~~~y~~~~~s~~~l~pa~n 792 (1175)
T COG5422 713 KRKAKSKTDGSLRGDIQFFLLDNMLLFCKAKAVNKWRQHKVFQRPIPLELLFISPDEDSPDRAEYLKPAPSADVLDPAYN 792 (1175)
T ss_pred hhhhhccCCcccccceeeeehhhHHHHhcccchhhhhhceeecCCCcchhhccccccCCchhhhccCCCCcccccChhhh
Confidence 64332 222347899999999999998743 335568889999998887655443210 0 0
Q ss_pred Cccc--ceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhhcccCCc
Q psy1488 550 GVTV--RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGL 600 (630)
Q Consensus 550 g~~~--~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~~~~~~~~~ 600 (630)
+..- ...|..+..+....+++.+.+..-++.|++++.+.++..........
T Consensus 793 t~~P~~a~~F~~~~~~~ry~itlYa~~~~g~d~~lE~i~nqQ~~l~~~t~~ft 845 (1175)
T COG5422 793 TKPPKNAYGFELYGNGQRYQITLYAETHAGRDTWLEHIKNQQDILRTRTLWFT 845 (1175)
T ss_pred cCCccccceeeeecccccccccccccccchHHHHHHhhhhhhhhhhhhhhhee
Confidence 1111 23367777666677899999999999999999998877654444333
No 14
>KOG4240|consensus
Probab=99.94 E-value=1.6e-27 Score=265.84 Aligned_cols=289 Identities=28% Similarity=0.492 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc-----CCCCCHHHHHHHhcCHHHHHHHHHH-HHHHHHhhhccCCCC
Q psy1488 269 VRSRVVRELINTERDFVKVLHDVSEGYLAECRRR-----NDMFSPEQIQTIFGNLEDILAFQSS-FLEDLETKLDWDAPY 342 (630)
Q Consensus 269 kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~-----~~~l~~~~~~~iF~ni~~I~~~h~~-ll~~L~~~~~~~~~~ 342 (630)
++..+++|+|+||+.||++|....++|+..+... .+.|. ....||+|+++|+.||.. ||..|+.+-. .
T Consensus 632 l~~~~m~ellqterayv~~L~~~l~~y~~e~d~~~~~i~~~~Ln--k~~~ifgnmeeiy~fhn~~~L~eLe~y~~----~ 705 (1025)
T KOG4240|consen 632 LKRHVMRELLQTERAYVRDLEECLEGYLAEMDSPMKEILPPLLN--KKEIIFGNMEEIYEFHNDIFLSELEKYEQ----L 705 (1025)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhccccccc--hHHHHHhhHHHHHHHHhhHHHHHhhhhcc----C
Confidence 4578999999999999999999999999988642 22333 667899999999999986 9999999853 2
Q ss_pred cCcHHHHHHHhcCCcccHHHHhhChHHHHHHHHHHHhCCchHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHHHH
Q psy1488 343 KSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAEL 422 (630)
Q Consensus 343 ~~~ig~vf~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~L 422 (630)
...+|.||+.+++.|.+|..||.|.+....++..... ..|+.+|+..... .+.+.+||++|||||++|.+||+++
T Consensus 706 pE~Vg~~fle~~d~fqly~~Yc~nke~S~ql~~~~a~----~~ff~e~qr~~~l-~l~~~S~l~kpvqritkYqlllkel 780 (1025)
T KOG4240|consen 706 PEDVGHCFLERADDFQLYAKYCQNKELSNQLIRLHAG----CSFFQEIQRRHGL-ELSISSYLIKPVQRITKYQLLLKEL 780 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHhccc----ccccHHHHHHhhh-hhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999998865433 3466666655443 3589999999999999999999999
Q ss_pred HhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCccEEEeeeEEEEec---Ccc
Q psy1488 423 LKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTS---GMW 499 (630)
Q Consensus 423 lk~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~~~~L~~~~r~ll~~G~l~~~~~---~~~ 499 (630)
++.+.+ -...|++|++.|-+|...+|+.+.- ..++|+.+. +...+.+|.+|.+...+. ..+
T Consensus 781 l~~c~e---~~~~lkd~l~~ml~v~k~~nd~mh~-----------~~~~~~d~n--l~~lg~~~~q~~f~vw~~k~l~rk 844 (1025)
T KOG4240|consen 781 LKCCCE---GTGDLKDALEVMLSVPKKVNDSMHL-----------IALEGYDGN--LDELGKLIMQDSFSVWKPKALARK 844 (1025)
T ss_pred HHhhhh---chHHHHHHHHHHHhhhhhcccccCH-----------HHHhhhhhh--HHHHHHHHhhccceeecHHHHhhh
Confidence 995543 3467999999999999999985532 234444431 344577888888875431 124
Q ss_pred eeEEEEEEeCCeEEEEEecc--CCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHHH
Q psy1488 500 TNTITLFLFDHQLVYCKRDI--LKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLED 577 (630)
Q Consensus 500 ~~~~~~fLF~d~Ll~~k~~~--~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~e 577 (630)
..+||+|||.-.+||||+.. .++..|++++.++++.+-|.....|+ +..|.||.+.....|++.|++.+.
T Consensus 845 ~~erhlfl~ei~ivf~K~~~~s~~~~~~~~~~~l~~~e~gite~v~Gd--------~~kf~~~~g~~~~~~~~~a~~~~~ 916 (1025)
T KOG4240|consen 845 GMERHLFLFEISIVFCKRIEESSERIKYVSKKKLPMSEVGITEHVEGD--------PCKFELWVGRTESVIDLKASNHET 916 (1025)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCcchhhccCCHHhhcchhhcccC--------ceEEEEeccCCCcceeeecCCcch
Confidence 56899999999999999742 34567888888999999998877776 467889887777799999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1488 578 KARWLAAFQQERALV 592 (630)
Q Consensus 578 k~~W~~~L~~a~~~~ 592 (630)
|..|++.|.+.+...
T Consensus 917 K~~W~~~ir~~~~~~ 931 (1025)
T KOG4240|consen 917 KQKWVKEIREVLQER 931 (1025)
T ss_pred hhhhccchHHHHHHH
Confidence 999999998877553
No 15
>KOG0689|consensus
Probab=99.94 E-value=5.8e-27 Score=245.45 Aligned_cols=293 Identities=28% Similarity=0.398 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCC---HHHHHHHhcCHHHHHHHHHH-HHHHHHhhhccCCCCc
Q psy1488 268 QVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS---PEQIQTIFGNLEDILAFQSS-FLEDLETKLDWDAPYK 343 (630)
Q Consensus 268 ~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~---~~~~~~iF~ni~~I~~~h~~-ll~~L~~~~~~~~~~~ 343 (630)
.++..++.|++.||..||++|..+.+.|+..+... -++ ...-+.||+|+.+|+.+|.. |+.+++.+... .
T Consensus 61 ~k~~~v~~e~iaTE~~yv~~l~~~~~~y~~~~~~~--~lp~~lrg~~~iifgni~~i~~~h~~~fl~e~e~~~r~----~ 134 (448)
T KOG0689|consen 61 KKRSFVLDELIATEVDYVKDLKSVVENYIELLDAE--DLPEDLRGKDKIIFGNIKEIYEFHKKEFLPELERCERD----P 134 (448)
T ss_pred hhhHHHHHHHHHHHHhhhhcccccccccccccccc--CCChhccCCceeeechHHHHHHhhcccCcchHHHhhhC----H
Confidence 46788999999999999999999999999988642 111 11246799999999999997 69999988742 3
Q ss_pred CcHHHHHHHhcCCcc-cHHHHhhChHHHHHHHHHHHhCCchHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHHHH
Q psy1488 344 SCIGETFLKHKSGFR-MYSEYCNSHPMAIATLQELYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAEL 422 (630)
Q Consensus 344 ~~ig~vf~~~~~~~~-~Y~~Y~~~~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~L 422 (630)
..+|.+|+++...|. .|..||.|.+.....+. .-.+..|++.++.... ..+++.+||++||||+++|++||+++
T Consensus 135 ~~~~~~f~kh~~k~~~~y~~y~q~kp~s~~~~~----~~~~~~~f~~~~~~~~-~~l~l~~~l~kPiQR~~kYqlLL~~~ 209 (448)
T KOG0689|consen 135 LELGQAFAKHERKNSVLYVTYCQNKPKSDYLLA----EYDNEAFFQEYQTQLG-HKLDLSSYLIKPVQRIMKYQLLLQDF 209 (448)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhcCCCCCcccce----ecccchhhHHHhhhcc-cccccchhhhhhhHHHHHHHHHHHHH
Confidence 469999999999998 99999999998844332 2234577777776444 46899999999999999999999999
Q ss_pred HhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCccEEEeeeEEEEecC-ccee
Q psy1488 423 LKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSG-MWTN 501 (630)
Q Consensus 423 lk~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~~~~L~~~~r~ll~~G~l~~~~~~-~~~~ 501 (630)
++.+.....|+..|.+|.+.|+.+..++|+... ...+.|+++. + ...+.+++++++.....+ +++.
T Consensus 210 ~k~~~~~~~d~~~l~~a~e~m~~~~~~~~d~~~-----------~~~l~g~e~~-l-~~qG~l~~qd~f~v~~~~~~~~~ 276 (448)
T KOG0689|consen 210 LKFCEKAGDDTDALCKAEEVMRFVLKRCNDMMQ-----------VGRLQGFEGD-L-KAQGKLRRQDEFDVSHGRAGKKK 276 (448)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHhHhhhc-----------cchhcccccc-h-HhhccccccCccceeeccccccc
Confidence 999998889999999999999999987776432 3456777764 2 344788999987654322 2256
Q ss_pred EEEEEEeCCeEEEEEeccC--CCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCC--eEEEEEeCCHHH
Q psy1488 502 TITLFLFDHQLVYCKRDIL--KRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKD--KWLLFCCRSLED 577 (630)
Q Consensus 502 ~~~~fLF~d~Ll~~k~~~~--~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~--~~~~l~a~s~~e 577 (630)
.+.+|||+.++||++.... ....|+||..|.+..+.+....+.. ...|.||..... ..|+++|.+.++
T Consensus 277 ~R~vflFe~~v~Fse~~~~~~~~~~y~yk~~ik~~~lgle~n~~~s--------~~rF~i~~r~~~~~~~~vlqa~s~~~ 348 (448)
T KOG0689|consen 277 DRRVFLFERLVVFSKLRKPESGTETYVYKQHIKVNDLGLEENNDNS--------ASRFEIWFRGRKKREAYVLQAGSKEI 348 (448)
T ss_pred hhhhhhhhhhhhhhhhhcCCCCCcceeeecchhhhheeeeccCCCC--------CcchhhhhhcccccceeEEeeCCHHH
Confidence 8999999999999997642 3367999999999999876544432 456778776544 679999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy1488 578 KARWLAAFQQERALV 592 (630)
Q Consensus 578 k~~W~~~L~~a~~~~ 592 (630)
++.|+.+|.....++
T Consensus 349 k~~W~~~i~~~l~~Q 363 (448)
T KOG0689|consen 349 KYAWTRAISSLLWQQ 363 (448)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998766554
No 16
>KOG3522|consensus
Probab=99.92 E-value=3.6e-25 Score=239.24 Aligned_cols=255 Identities=26% Similarity=0.377 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCCCCcCcHHHH
Q psy1488 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGET 349 (630)
Q Consensus 270 R~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~~~~~~ig~v 349 (630)
|..++.+|+++|++|+..|..+.+.|.+||..+..++.+..++.||.+|.+|+++|+.||..|..+...+. ..+.+|+.
T Consensus 1 r~~v~~~l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l~~~~~~~eif~~i~ell~~he~fl~~l~s~~~~w~-~qq~vga~ 79 (925)
T KOG3522|consen 1 RRYVLLQLIDREQSYVESLHTGVDRYVQPLKERKVLIDPRDVDEIFQNIPELLEIHEDFLEQLCSRDQQWD-EQQKVGAS 79 (925)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHhhHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHH
Confidence 45688999999999999999999999999998777788899999999999999999999999999986433 35779999
Q ss_pred HHHhcCC---cccHHHHhhChHHHHHHHHHHHhCCchHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHHHHHhcC
Q psy1488 350 FLKHKSG---FRMYSEYCNSHPMAIATLQELYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYT 426 (630)
Q Consensus 350 f~~~~~~---~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Llk~t 426 (630)
|..+... +.+|..||+|+-+|...+...+ .+.|.+|++ ++++| |+++|.|||+ |+|||
T Consensus 80 ~v~~fSk~~v~~~Y~~y~nn~~~A~~~l~~~~-rpaf~~Fl~---------------l~~kP--r~P~y~lll~-mlkht 140 (925)
T KOG3522|consen 80 FVYSFSKTAVLAAYSKYVNNFKRAKCALRNKK-RPAFSKFLE---------------LMIKP--RFPRYELLLQ-MLKHT 140 (925)
T ss_pred HHHhhhHHHHHHHHHHHHhchhHHHHHHHHhc-chHHHHHHH---------------HHhcc--CCchHHHHHH-HhhcC
Confidence 9999875 3699999999999999998655 678889887 78999 9999999999 99999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CCcccCCccEEEeeeEEEEecCcceeEEE
Q psy1488 427 KTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEG--EDLIETSSQLIHQGEVIRVTSGMWTNTIT 504 (630)
Q Consensus 427 ~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~~--~~L~~~~r~ll~~G~l~~~~~~~~~~~~~ 504 (630)
|.+|||+..|+.|+..+++++.++|+.++..+...++..+.+.|+..-. .+|..+.|+|+.+..+....-...++.+-
T Consensus 141 p~~Hpdr~~Lq~al~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r~el~e~L~ag~r~lLl~dl~se~vy~~rk~d~~ 220 (925)
T KOG3522|consen 141 PLDHPDRLILQLALTLLETLAEKINEHKRFADEINELQAALREIEVRSELMEDLGAGRRQLLLQDLVSETVYTGRKKDRK 220 (925)
T ss_pred CcCCCchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHhhhhhhccccchhh
Confidence 9999999999999999999999999999999888777776666543211 35667788888888877655555567888
Q ss_pred EEEeCCeEEEEEecc----CCCc----------eeEEEeEeecCcceeeeCCCC
Q psy1488 505 LFLFDHQLVYCKRDI----LKRN----------THVYKARLNIDTSQIINLPDG 544 (630)
Q Consensus 505 ~fLF~d~Ll~~k~~~----~~~~----------~~~~k~~i~L~~~~v~~~~d~ 544 (630)
.|+|+|.++.+.-+. .++. +|.++-.++|....|.....+
T Consensus 221 ~~~~rd~i~~~~Lk~~sg~~r~~~t~as~vdt~ky~~lw~~~L~~~~vvks~~g 274 (925)
T KOG3522|consen 221 AFLFRDLIVNTDLKRASGSSRKPSTAASVVDTAKYKLLWKDPLVFADVVKSRAG 274 (925)
T ss_pred heeeeeeeeeeeeeeeeceecCCccccccccccceeeeeccccchhheeeeccc
Confidence 999999998776431 1222 788888899999988874443
No 17
>KOG3531|consensus
Probab=99.89 E-value=1.7e-24 Score=232.52 Aligned_cols=309 Identities=18% Similarity=0.347 Sum_probs=257.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhc-cCCCC------cC
Q psy1488 272 RVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLD-WDAPY------KS 344 (630)
Q Consensus 272 ~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~-~~~~~------~~ 344 (630)
.+++||..||+.|.++|.++...|-..+.. .+.........+|.|++.|.++|+.||+++++++. |++.. ..
T Consensus 536 F~~kel~~tERty~kdleV~tt~Frst~v~-~dam~~~~~s~l~~~~~pl~k~h~~fLk~ieeria~weGrsnani~~~~ 614 (1036)
T KOG3531|consen 536 FIVKELSDTERTYLKDLEVITTWFRSTVVK-EDAMPNALKSLLFHNSTPLTKFHEGFLKEIEERIALWEGRSNANIVIEQ 614 (1036)
T ss_pred eeecccccccccchhccceeeeeecceeec-CcccccchhhhhccCCChhhHHHHHHHHHHHHHHHhccCCCCCceeeee
Confidence 478999999999999999998777666654 56677788889999999999999999999999983 43322 14
Q ss_pred cHHHHHHHhcCCcccHHHHhhChHHHHHHHHHHHhC-CchHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHHHHH
Q psy1488 345 CIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQH-NNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELL 423 (630)
Q Consensus 345 ~ig~vf~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~-~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~Ll 423 (630)
+|||+.++++..+++|..|...|...+..+....+- .+|..+..+.+....| .++++.||.+|++|+..|.++|+.|.
T Consensus 615 ~igDVmLk~m~~l~i~~~~~q~h~~~l~~~t~~~k~~~r~~~v~kefelqkvc-yLP~~~fllkpL~rllhyq~~LeRLc 693 (1036)
T KOG3531|consen 615 RIGDVMLKNMRSLKITTTTTQRHAETLTTLTTTSKVLTRLEAVYKEFELQKVC-YLPLNTFLLKPLSRLLHYQLALERLC 693 (1036)
T ss_pred ccCCcchhhhhccchhhhhHHhHHHHHHHHhhcchhhhhHHhhhccHHhhhcc-ccccchhhhccccHHHHHHHHHHHhh
Confidence 699999999999999999999999999988755444 3678887777776665 69999999999999999999999999
Q ss_pred hcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCccEEEeeeEEEEecCcceeEE
Q psy1488 424 KYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTI 503 (630)
Q Consensus 424 k~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~~~~L~~~~r~ll~~G~l~~~~~~~~~~~~ 503 (630)
.+..++|.||.+...+...+-.....+-...-+.+ +|.+|+..+.+. .+|+.++|++|++|.+.+.... .-+++
T Consensus 694 ~~~~~~h~d~ad~~a~~~~~~~~tk~iqs~m~~~e---~l~Elkrdl~s~--e~LV~p~rE~ir~g~llK~skk-gLqqr 767 (1036)
T KOG3531|consen 694 GHYSPTHEDFADCKAKPNPITEPTKPLQSVMIRTE---KLRELKRDLASI--ENLVHPGREFIRSGCLLKLSKK-GLQQR 767 (1036)
T ss_pred cccCCCccchHHHhhcccccccccccccccchhHH---HHHHHHHhhhcc--ccccCcchhhhhcCCchhhccc-cchhh
Confidence 99999999998888888777777766666555555 788889988875 5689999999999999876533 34689
Q ss_pred EEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHHHHHHHHH
Q psy1488 504 TLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLA 583 (630)
Q Consensus 504 ~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~ 583 (630)
.+|||+|+||++.+...-.+.|.+.+.+|+. +.+.+.++ .++++|+|.|.. ..+.++..|.+..+.+.|..
T Consensus 768 mfFLfsdillytsk~~~~~~~fri~g~lP~~-l~~en~en------~~s~p~~~ti~~--~qk~i~vsast~~~sk~~~~ 838 (1036)
T KOG3531|consen 768 MFFLFSDILLYTSKGPDVQKCFRINGDLPLT-LTMENSEN------EWSVPHCFTISG--AQKQIYVSASTRRESKKWEF 838 (1036)
T ss_pred hhhhhhhhheeccCCCChhheeEeccCCceE-eeeecccc------cccCCceEEEec--cceEEEEeccchhhhhhhhh
Confidence 9999999999999865666789999999999 77766654 347899999865 34567889999999999999
Q ss_pred HHHHHHHHHhhccc
Q psy1488 584 AFQQERALVEQDRE 597 (630)
Q Consensus 584 ~L~~a~~~~~~~~~ 597 (630)
.+..++..+...+.
T Consensus 839 ~r~~~i~~~~k~~~ 852 (1036)
T KOG3531|consen 839 DRRKAIDLAPKKSS 852 (1036)
T ss_pred ccchhhhhccccCC
Confidence 99999988776654
No 18
>KOG3524|consensus
Probab=99.81 E-value=5.5e-20 Score=195.06 Aligned_cols=303 Identities=20% Similarity=0.265 Sum_probs=231.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh----cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCC
Q psy1488 265 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR----RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDA 340 (630)
Q Consensus 265 ~~~~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~----~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~ 340 (630)
+....|-.+-.++..||.+|+.-|+.+.+.|..++.. ..+++.+.++..+|+|+.+|..+|....+.|+.....+.
T Consensus 380 sk~s~r~~~~~~~y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~nw~ 459 (850)
T KOG3524|consen 380 SKLSLRVKFKEALYCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQNWI 459 (850)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHhhH
Confidence 3445677888999999999999999998887665532 567888999999999999999999999988887653222
Q ss_pred CCcCcHHHHHHHhcCCc-ccHHHHhhChHHHHHHHHHHHhC-CchHHHHHHHHhhccCCCCCccccchhhhhhhhccHHH
Q psy1488 341 PYKSCIGETFLKHKSGF-RMYSEYCNSHPMAIATLQELYQH-NNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQ 418 (630)
Q Consensus 341 ~~~~~ig~vf~~~~~~~-~~Y~~Y~~~~~~a~~~l~~~~~~-~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LL 418 (630)
. ..+.+ +.|-.|.+-|...-..++.+... +.|.+|++..+..+.|.++.|.++++.|+||++-..||
T Consensus 460 e-----------~k~el~kayppyvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirpvqrlpsvill 528 (850)
T KOG3524|consen 460 E-----------AKEELKKAYPPYVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLPSVILL 528 (850)
T ss_pred H-----------HHHHHHHhccchhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhcccchhccchhhhhHHHHH
Confidence 1 11333 36666666666666666666555 48999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCccEEEeeeEE-EEecC
Q psy1488 419 LAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVI-RVTSG 497 (630)
Q Consensus 419 L~~Llk~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~~~~L~~~~r~ll~~G~l~-~~~~~ 497 (630)
|++|.| ..+..|+..+++|+..++++..+||+-+++.++...+...-..|+|++. .|+..+|-||..-.+. .+...
T Consensus 529 lndl~k--~s~N~dk~~leea~kaikev~khInedKrkte~~~~ifdkf~diegcpa-~lvssnrsfi~~lev~i~l~~~ 605 (850)
T KOG3524|consen 529 LNDMAK--KSDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIEGCPA-ILVSSNRSFIRELEVSIALTSP 605 (850)
T ss_pred HHHHHh--hccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhcCch-hheeccchHHHHhhhhhhhcCc
Confidence 999999 4478899999999999999999999999999999999999999999875 5778888887776652 22211
Q ss_pred --cceeEEEEEEeCCeEEEEEecc-----------CCCceeEEEeEeecCcce-eeeCCCCCCCCCCcccceeEEEEecC
Q psy1488 498 --MWTNTITLFLFDHQLVYCKRDI-----------LKRNTHVYKARLNIDTSQ-IINLPDGKDPHLGVTVRHAIKIHCSD 563 (630)
Q Consensus 498 --~~~~~~~~fLF~d~Ll~~k~~~-----------~~~~~~~~k~~i~L~~~~-v~~~~d~~~~~~g~~~~~~f~I~~~~ 563 (630)
.......+|||+|+|++|+.+. ..+..|.+-+.|+|+.+. |.|+.+.++ ..++|.+....
T Consensus 606 ~~~rg~~~~l~lf~dvlei~k~r~~~~~tF~S~hs~tr~p~KhI~li~LntIr~V~dIrE~~~------cpnAF~lllr~ 679 (850)
T KOG3524|consen 606 GLQRGAKMKLFLFHDVLEITKIRLARHASFASLHSRQRRPYKHIDLIQLNTIRSVFDIREIAK------CPNAFVLLLRH 679 (850)
T ss_pred ccccccceeeehhhhHHHHHHHhHhhhccccCCCCCCCCcccceeeccHHHHHHHhhhhhhcc------CccceEEEEeC
Confidence 1134678999999999998751 122347777788888775 445554333 36777766543
Q ss_pred CC--e--EEEEEeCCHH--HHHHHHHHHHH
Q psy1488 564 KD--K--WLLFCCRSLE--DKARWLAAFQQ 587 (630)
Q Consensus 564 ~~--~--~~~l~a~s~~--ek~~W~~~L~~ 587 (630)
+. . .++|+-.+.| ...+|++.|..
T Consensus 680 ~~EQ~~v~~~Fq~tdDE~p~e~~y~K~LC~ 709 (850)
T KOG3524|consen 680 RDEQGGIDTVFESNDDEDPSDMRYFKNLCG 709 (850)
T ss_pred chhhcCeeEEEEecccccchhhHHHHHHhh
Confidence 32 1 2346666655 35569999984
No 19
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.81 E-value=6.8e-19 Score=148.89 Aligned_cols=107 Identities=41% Similarity=0.806 Sum_probs=97.7
Q ss_pred cEEEeeeEEEEecC-cceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEec
Q psy1488 484 QLIHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCS 562 (630)
Q Consensus 484 ~ll~~G~l~~~~~~-~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~ 562 (630)
+||++|++.+++.. .+.++|++|||+..||+||++..+++.|.||+.|.|+.+.|.+.+|+++...|.+++|+|+|++.
T Consensus 1 eli~~Gel~~~s~~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~ 80 (109)
T cd01224 1 ELFLQGEATRQKQNKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSE 80 (109)
T ss_pred CceEeeeEEEEecccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEc
Confidence 48999999988753 45679999999999999999888889999999999999999999999887678889999999999
Q ss_pred CCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q psy1488 563 DKDKWLLFCCRSLEDKARWLAAFQQERA 590 (630)
Q Consensus 563 ~~~~~~~l~a~s~~ek~~W~~~L~~a~~ 590 (630)
+.+.+|+|+|.|+++|+.|+++|...++
T Consensus 81 ~~~~~~~f~~Kt~e~K~~Wm~a~~~er~ 108 (109)
T cd01224 81 STDEWYLFSFKSAERKHRWLSAFALERK 108 (109)
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHhhc
Confidence 9899999999999999999999987653
No 20
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.70 E-value=3.7e-16 Score=132.90 Aligned_cols=98 Identities=18% Similarity=0.284 Sum_probs=84.9
Q ss_pred cEEEeeeEEEEecCcceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecC
Q psy1488 484 QLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSD 563 (630)
Q Consensus 484 ~ll~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~ 563 (630)
+||++|.|++++.. ..++|++|||||+||||.+...+...|.+++.|||.++.|.+++++. ..+|+|.|.+
T Consensus 1 ~~ikEG~L~K~~~k-~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~~------~~~~~F~I~~-- 71 (99)
T cd01220 1 EFIRQGCLLKLSKK-GLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHEW------GVPHCFTIFG-- 71 (99)
T ss_pred CeeeEEEEEEEeCC-CCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCCc------CCceeEEEEc--
Confidence 48999999998754 46789999999999999987666678999999999999998877632 3579999985
Q ss_pred CCeEEEEEeCCHHHHHHHHHHHHHHHH
Q psy1488 564 KDKWLLFCCRSLEDKARWLAAFQQERA 590 (630)
Q Consensus 564 ~~~~~~l~a~s~~ek~~W~~~L~~a~~ 590 (630)
+.+.|+|+|.|++||+.|+++|++||+
T Consensus 72 ~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 72 GQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 567899999999999999999999986
No 21
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.69 E-value=4.2e-16 Score=133.03 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=87.5
Q ss_pred CccEEEeeeEEEEecCcceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEe
Q psy1488 482 SSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHC 561 (630)
Q Consensus 482 ~r~ll~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~ 561 (630)
+|.||++|.|++++.+. .++|++|||||+||+++.. ..+..|.++..++|..+.|.++.|+. ..+++|.|.+
T Consensus 1 gR~li~eG~L~K~~rk~-~~~R~ffLFnD~LvY~~~~-~~~~~~~~~~~i~L~~~~v~~~~d~~------~~~n~f~I~~ 72 (104)
T cd01218 1 GRVLVGEGVLTKMCRKK-PKQRQFFLFNDILVYGNIV-ISKKKYNKQHILPLEGVQVESIEDDG------IERNGWIIKT 72 (104)
T ss_pred CCEEEecCcEEEeecCC-CceEEEEEecCEEEEEEee-cCCceeeEeeEEEccceEEEecCCcc------cccceEEEec
Confidence 58999999999988444 5679999999999999874 34567999999999999999988753 3579999976
Q ss_pred cCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q psy1488 562 SDKDKWLLFCCRSLEDKARWLAAFQQERALVE 593 (630)
Q Consensus 562 ~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~~ 593 (630)
..++|+++|.|++||..|+++|++|++...
T Consensus 73 --~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l 102 (104)
T cd01218 73 --PTKSFAVYAATETEKREWMLHINKCVTDLL 102 (104)
T ss_pred --CCeEEEEEcCCHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999999998763
No 22
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.69 E-value=3.5e-16 Score=134.91 Aligned_cols=101 Identities=24% Similarity=0.428 Sum_probs=85.6
Q ss_pred ccEEEeeeEEEEecC-cceeEEEEEEeCCeEEEEEeccCCC-------ceeEEEeEeecCcceeeeCCCCCCCCCCcccc
Q psy1488 483 SQLIHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKR-------NTHVYKARLNIDTSQIINLPDGKDPHLGVTVR 554 (630)
Q Consensus 483 r~ll~~G~l~~~~~~-~~~~~~~~fLF~d~Ll~~k~~~~~~-------~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~ 554 (630)
+.||++|.|++++.+ +..++||+|||||+||+||++..+. ..|.|++.++|..+.|.+.+|++ .++
T Consensus 2 ~elI~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~------~~k 75 (112)
T cd01261 2 NEFIMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSS------EYK 75 (112)
T ss_pred ccccccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCc------ccC
Confidence 579999999998743 3367999999999999999865422 37999999999999999988865 468
Q ss_pred eeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q psy1488 555 HAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERA 590 (630)
Q Consensus 555 ~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~ 590 (630)
|+|.|.+.+ ..+++|+|.|+++|+.||++|..++.
T Consensus 76 naF~I~~~~-~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 76 NAFEIILKD-GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred ceEEEEcCC-CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 999998754 45899999999999999999998764
No 23
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.56 E-value=6e-14 Score=118.11 Aligned_cols=93 Identities=19% Similarity=0.305 Sum_probs=78.8
Q ss_pred ccEEEeeeEEEEecCcceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEec
Q psy1488 483 SQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCS 562 (630)
Q Consensus 483 r~ll~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~ 562 (630)
+.||.+|.+.....+ ++||+|||+++||+||+. +..|.||..|.++++.|.+..+++ +++|.|...
T Consensus 2 geLlleg~l~~~~~~---~eR~vFLFe~~ll~~K~~---~~~y~~K~~i~~~~l~i~e~~~~d--------~~~F~v~~~ 67 (97)
T cd01222 2 GDLLLEGRFREHGGG---KPRLLFLFQTMLLIAKPR---GDKYQFKAYIPCKNLMLVEHLPGE--------PLCFRVIPF 67 (97)
T ss_pred CceeeeceEEeecCC---CceEEEEecccEEEEEec---CCeeEEEEEEEecceEEecCCCCC--------CcEEEEEec
Confidence 579999999854433 489999999999999986 468999999999999998866643 589999776
Q ss_pred C-CCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 563 D-KDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 563 ~-~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
+ ++..|+|+|+|+++|+.|+++|..++
T Consensus 68 ~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 68 DDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 3 34689999999999999999999876
No 24
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.55 E-value=7.5e-14 Score=120.00 Aligned_cols=98 Identities=21% Similarity=0.383 Sum_probs=80.9
Q ss_pred cEEEeeeEEEEecC-cceeEEEEEEeCCeEEEEEeccC-CCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEe
Q psy1488 484 QLIHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDIL-KRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHC 561 (630)
Q Consensus 484 ~ll~~G~l~~~~~~-~~~~~~~~fLF~d~Ll~~k~~~~-~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~ 561 (630)
.||++|.|++++.. ...++||+|||||+||+|+++.. ....|.+++.|+|..+.|.+..+. ..+|+|.|.+
T Consensus 1 e~ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~~-------~~~~~F~I~~ 73 (101)
T cd01219 1 ELLKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDNL-------ERPHSFLVSG 73 (101)
T ss_pred CcccceEEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCCC-------CcCceEEEec
Confidence 47899999998765 34678999999999999996532 345799999999999999765322 3578999966
Q ss_pred cCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q psy1488 562 SDKDKWLLFCCRSLEDKARWLAAFQQERA 590 (630)
Q Consensus 562 ~~~~~~~~l~a~s~~ek~~W~~~L~~a~~ 590 (630)
. +++|+|+|.|++||+.|+.+|+.+++
T Consensus 74 ~--~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 74 K--QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred C--CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 4 47899999999999999999999985
No 25
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.51 E-value=2.4e-13 Score=118.00 Aligned_cols=100 Identities=15% Similarity=0.288 Sum_probs=82.8
Q ss_pred ccEEEeeeEEEEecC----cceeEEEEEEeCCeEEEEEeccC----CCceeEEEeEeecCcceeeeCCCCCCCCCCcccc
Q psy1488 483 SQLIHQGEVIRVTSG----MWTNTITLFLFDHQLVYCKRDIL----KRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVR 554 (630)
Q Consensus 483 r~ll~~G~l~~~~~~----~~~~~~~~fLF~d~Ll~~k~~~~----~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~ 554 (630)
++||.+|.++..... .+.++|+||||+++||+||+... +...|+||..|+|+.+.+.+..+++ +
T Consensus 3 G~Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd--------~ 74 (114)
T cd01232 3 GKLLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGD--------P 74 (114)
T ss_pred CceEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCCC--------C
Confidence 678999998755432 24679999999999999998543 2457999999999999999988775 4
Q ss_pred eeEEEEecCCC---eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy1488 555 HAIKIHCSDKD---KWLLFCCRSLEDKARWLAAFQQERA 590 (630)
Q Consensus 555 ~~f~I~~~~~~---~~~~l~a~s~~ek~~W~~~L~~a~~ 590 (630)
..|.|+..++. ..|+++|.|.++|+.|+.+|++..+
T Consensus 75 ~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 75 CRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred ceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 67888887665 7999999999999999999998754
No 26
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.43 E-value=3.9e-14 Score=104.24 Aligned_cols=49 Identities=41% Similarity=0.904 Sum_probs=45.3
Q ss_pred EeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchh
Q psy1488 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231 (630)
Q Consensus 183 aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~ 231 (630)
|+|+|.++.++||+|++||+|.|+...+++||.|+.+|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 7899999999999999999999999999999999999999999999984
No 27
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.42 E-value=2.3e-12 Score=107.76 Aligned_cols=97 Identities=16% Similarity=0.368 Sum_probs=81.3
Q ss_pred cEEEeeeEEEEecCcc--eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEe
Q psy1488 484 QLIHQGEVIRVTSGMW--TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHC 561 (630)
Q Consensus 484 ~ll~~G~l~~~~~~~~--~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~ 561 (630)
.+|++|.++....+.+ .+..++|||||+||++.... ..+|.+...++|+.+.|.+++|.+ .++++|.|.+
T Consensus 1 ~~i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~--~~ky~~~~~~~L~~i~V~ni~D~~------~~kNafki~t 72 (100)
T cd01226 1 KVILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINA--AGKYVMESTYSLNSVAVVNVKDRE------NAKKVLKLLI 72 (100)
T ss_pred CEEEcCcEEEechhhCCccceEEEEEeccEEEEEEecc--cceEEEEEEEehHHeEEEecCCCc------CcCceEEEEe
Confidence 3789999998875543 34567999999999998763 357999999999999999999875 3699999987
Q ss_pred cCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q psy1488 562 SDKDKWLLFCCRSLEDKARWLAAFQQERA 590 (630)
Q Consensus 562 ~~~~~~~~l~a~s~~ek~~W~~~L~~a~~ 590 (630)
..+ ..+++|.|+++|.+|+.+|++|.+
T Consensus 73 ~~~--s~i~qaes~~~K~eWl~~le~a~~ 99 (100)
T cd01226 73 FPE--SRIYQCESARIKTEWFEELEQAKR 99 (100)
T ss_pred CCc--cEEEEeCCHHHHHHHHHHHHHHhc
Confidence 543 577899999999999999999874
No 28
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.39 E-value=5.9e-12 Score=111.74 Aligned_cols=102 Identities=17% Similarity=0.293 Sum_probs=83.5
Q ss_pred ccEEEeeeEEEEecC-----------cceeEEEEEEeCCeEEEEEeccCC-----CceeEEEeEeecCcceeeeCCCCCC
Q psy1488 483 SQLIHQGEVIRVTSG-----------MWTNTITLFLFDHQLVYCKRDILK-----RNTHVYKARLNIDTSQIINLPDGKD 546 (630)
Q Consensus 483 r~ll~~G~l~~~~~~-----------~~~~~~~~fLF~d~Ll~~k~~~~~-----~~~~~~k~~i~L~~~~v~~~~d~~~ 546 (630)
++||++|.++..... .+.++||||||+.++|+||+.... ...|.||..|.|..+.+.+..+++
T Consensus 1 G~ll~Qd~f~Vw~~~~~~~~~k~~~r~K~~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd- 79 (133)
T cd01227 1 GKLLMQGSFSVWTDHKKGHTKKELARFKPMQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGD- 79 (133)
T ss_pred CCceEecceEEEEccccccchhhhhccCCceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCC-
Confidence 468899998764321 134689999999999999986422 347999999999999998766654
Q ss_pred CCCCcccceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy1488 547 PHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALV 592 (630)
Q Consensus 547 ~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~ 592 (630)
...|.||+.+....|+|+|.|.+.|+.|++.|.+.....
T Consensus 80 -------~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 80 -------TKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred -------ccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 578999998888899999999999999999999887655
No 29
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.39 E-value=4.9e-12 Score=110.57 Aligned_cols=102 Identities=24% Similarity=0.307 Sum_probs=79.1
Q ss_pred ccEEEeeeEEEEecCc---------ceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCC---
Q psy1488 483 SQLIHQGEVIRVTSGM---------WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLG--- 550 (630)
Q Consensus 483 r~ll~~G~l~~~~~~~---------~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g--- 550 (630)
|+|++.|+|+.+.... ....+|+|||||+||+||++. ...|.+....+...+.|..+++......|
T Consensus 1 RwLvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~--~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~ 78 (125)
T cd01221 1 RWLVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKL--GSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSN 78 (125)
T ss_pred CceEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecC--CCeEEEEeeccccceEEeeccccccccccccc
Confidence 6899999998775321 245899999999999999873 78899999999999998876554321111
Q ss_pred -cccceeEEEEe----cCCCeEEEEEeCCHHHHHHHHHHHH
Q psy1488 551 -VTVRHAIKIHC----SDKDKWLLFCCRSLEDKARWLAAFQ 586 (630)
Q Consensus 551 -~~~~~~f~I~~----~~~~~~~~l~a~s~~ek~~W~~~L~ 586 (630)
...+|.|.|.. .++...++|+|.|++||.+|+++|.
T Consensus 79 ~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 79 LVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 14578898863 3455789999999999999999985
No 30
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.37 E-value=1.9e-12 Score=105.39 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=74.1
Q ss_pred ccEEEeeeEEEEecCcceeEEEEEEeCCeEEEEEec---cCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEE
Q psy1488 483 SQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD---ILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKI 559 (630)
Q Consensus 483 r~ll~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~---~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I 559 (630)
|+|+.+|.+++++.+. .+.|++|||||+||+++-+ ..+...|..+-.|||.++.+... +|.+
T Consensus 1 r~Lv~eg~lvel~~~~-rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~--------------~~~~ 65 (96)
T cd01228 1 RQLVKDSFLVELVEGS-RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE--------------PFRI 65 (96)
T ss_pred CcccccceeeeehhCC-CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch--------------hhhc
Confidence 6799999999998665 4699999999999999964 23347799999999999988644 2444
Q ss_pred EecCCCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 560 HCSDKDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 560 ~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
. ....++|+|.|+|..||.+|+.+|.+.+
T Consensus 66 ~-~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 66 H-NKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred c-ccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 3 3356789999999999999999998654
No 31
>KOG0162|consensus
Probab=99.31 E-value=1.5e-11 Score=131.64 Aligned_cols=54 Identities=31% Similarity=0.715 Sum_probs=51.9
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhh
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~ 232 (630)
+.|+|+|+|.+++.+||+|++||+|.|+.++..|||.|+.+|+.||||.+||+.
T Consensus 1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence 679999999999999999999999999999999999999999999999999964
No 32
>KOG2199|consensus
Probab=99.28 E-value=2.2e-12 Score=129.86 Aligned_cols=57 Identities=44% Similarity=0.780 Sum_probs=53.7
Q ss_pred eEEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhcc
Q psy1488 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 234 (630)
Q Consensus 178 ~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~~ 234 (630)
+..|+|||||++.+++||+|++||+|+|++..+.+||+|.+.+..|+||+|||....
T Consensus 215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence 467999999999999999999999999999999999999999999999999997554
No 33
>KOG1118|consensus
Probab=99.26 E-value=3.4e-12 Score=124.41 Aligned_cols=57 Identities=30% Similarity=0.624 Sum_probs=54.3
Q ss_pred eEEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhcc
Q psy1488 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 234 (630)
Q Consensus 178 ~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~~ 234 (630)
.++|+|+|||++++++||.|++||+|+|+...|.+||.|...|..|+||.|||+.+.
T Consensus 306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlv 362 (366)
T KOG1118|consen 306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLV 362 (366)
T ss_pred chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEec
Confidence 478999999999999999999999999999999999999999999999999998764
No 34
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.25 E-value=4.8e-11 Score=102.20 Aligned_cols=110 Identities=18% Similarity=0.227 Sum_probs=82.5
Q ss_pred ccEEEeeeEEEEec-CcceeEEEEEEeCCeEEEEEeccCC--CceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEE
Q psy1488 483 SQLIHQGEVIRVTS-GMWTNTITLFLFDHQLVYCKRDILK--RNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKI 559 (630)
Q Consensus 483 r~ll~~G~l~~~~~-~~~~~~~~~fLF~d~Ll~~k~~~~~--~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I 559 (630)
++++..|++..... ..+.++||+|||+.++|+||++... ...|.||..+.|..+.|.+.+..+.........++|.|
T Consensus 2 GR~~~DGelk~k~~~~~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L 81 (116)
T cd01223 2 GRPLLDGEVRIKASEDQKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYL 81 (116)
T ss_pred CccccCCceEEeEeccCCCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEE
Confidence 45677888754332 2336799999999999999986432 23499999999999888765533321112246789999
Q ss_pred EecCCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy1488 560 HCSDKDKWLLFCCRSLEDKARWLAAFQQERALV 592 (630)
Q Consensus 560 ~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~ 592 (630)
........++|.|.|+++|+.|+.+|..|...+
T Consensus 82 ~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sni 114 (116)
T cd01223 82 AHKQGKTGFTFYFKTEHLRKKWLKALEMAMSNI 114 (116)
T ss_pred EecCCCccEEEEeCCHHHHHHHHHHHHHHHhcC
Confidence 887655679999999999999999999998754
No 35
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.25 E-value=2.6e-12 Score=97.44 Aligned_cols=53 Identities=45% Similarity=0.928 Sum_probs=47.9
Q ss_pred EEEEeeccCCCCCCCCCCCCCCEEEEE-EecCCCcccccCCCccccccccchhh
Q psy1488 180 LAEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEASGWFPSAFVRL 232 (630)
Q Consensus 180 ~~~aly~~~~~~~~eL~f~~gd~i~vl-~~~~~~Ww~g~~~g~~G~~P~~~v~~ 232 (630)
+++|++||.+..+++|+|++||+|.|+ +..+++||.|+.+|+.||||.+||+.
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~ 54 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEE 54 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEE
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEE
Confidence 478999999999999999999999999 78889999999999999999999975
No 36
>KOG1029|consensus
Probab=99.16 E-value=2.2e-11 Score=131.05 Aligned_cols=56 Identities=39% Similarity=0.767 Sum_probs=52.3
Q ss_pred eEEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhc
Q psy1488 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 233 (630)
Q Consensus 178 ~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~ 233 (630)
+..|.|+|||.++++|||+|++||+|.|+++.+++||.|+++|..|+||+|||...
T Consensus 1053 v~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1053 VCQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred cceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccccc
Confidence 35688999999999999999999999999999999999999999999999999533
No 37
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.11 E-value=1.1e-09 Score=92.45 Aligned_cols=107 Identities=21% Similarity=0.422 Sum_probs=84.2
Q ss_pred CCCCCcccCCccEEEeeeEEEEec-CcceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCc
Q psy1488 473 WEGEDLIETSSQLIHQGEVIRVTS-GMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGV 551 (630)
Q Consensus 473 ~~~~~L~~~~r~ll~~G~l~~~~~-~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~ 551 (630)
|+|.++ ...+..|+.+.+..... .....+|+++||..+|+++... .+...|.|++.+||..+.|...+|.+
T Consensus 1 Weg~~i-~~lG~vi~mS~V~~~~~~~qe~~eRyLvLFp~~LlilS~s-~r~sGf~yqGkLPL~~i~v~~lEd~e------ 72 (111)
T cd01225 1 WEGQDI-KTLGNVIHMSQVAVQYGAGEEKRERYLVLFPNVLLMLSAS-PRMSGFIYQGKLPLTGIIVTRLEDTE------ 72 (111)
T ss_pred CCCcch-hhcCceEEEEEEEEecCCccccceeEEEEcCceEEEEEcC-CCccceEEeeeecccccEEechHhcc------
Confidence 556554 45577888888764322 2225699999999999999975 45678999999999999999877755
Q ss_pred ccceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHH
Q psy1488 552 TVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQE 588 (630)
Q Consensus 552 ~~~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a 588 (630)
..+++|+|.+...+ .+++.|.+.+|.++|+.+|++.
T Consensus 73 ~~~~aFeI~G~li~-~i~v~C~~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 73 ALKNAFEISGPLIE-RIVVVCNNPQDAQEWVELLNAN 108 (111)
T ss_pred CccceEEEeccCcC-cEEEEeCCHHHHHHHHHHHHhh
Confidence 34899999876655 4667799999999999999874
No 38
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.02 E-value=1.2e-10 Score=85.55 Aligned_cols=46 Identities=41% Similarity=0.860 Sum_probs=41.9
Q ss_pred EEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccC--CCccccccc
Q psy1488 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPS 227 (630)
Q Consensus 182 ~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~--~g~~G~~P~ 227 (630)
+|+|+|.+..++||+|++||.|.|++..+++||.|+. .|+.||||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 5899999999999999999999999999999999995 379999995
No 39
>KOG4226|consensus
Probab=98.98 E-value=6e-10 Score=106.91 Aligned_cols=53 Identities=30% Similarity=0.681 Sum_probs=49.9
Q ss_pred EEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhc
Q psy1488 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 233 (630)
Q Consensus 181 ~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~ 233 (630)
|..-|.|+++.++||++.+|+.|.|+++..+|||.|..+|..||||+|||.+.
T Consensus 110 AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~ 162 (379)
T KOG4226|consen 110 AVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEE 162 (379)
T ss_pred eEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehh
Confidence 55679999999999999999999999999999999999999999999999754
No 40
>KOG4225|consensus
Probab=98.97 E-value=9.6e-10 Score=112.48 Aligned_cols=62 Identities=29% Similarity=0.574 Sum_probs=56.4
Q ss_pred CCceEEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhcccc
Q psy1488 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ 236 (630)
Q Consensus 175 ~~~~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~~s~ 236 (630)
+....-++|+|+|+++...||.|++||+|.|+.+.|.+|++|+.+|+.|+||.+||+.+.-.
T Consensus 227 ~~~~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~ 288 (489)
T KOG4225|consen 227 EKPKRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPR 288 (489)
T ss_pred ccccchhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcc
Confidence 33445699999999999999999999999999999999999999999999999999987653
No 41
>KOG2856|consensus
Probab=98.95 E-value=1.8e-09 Score=107.87 Aligned_cols=56 Identities=32% Similarity=0.592 Sum_probs=51.5
Q ss_pred eEEEEEeeccCCCCCCCCCCCCCCEEEEEEecC-CCcccccCC-Cccccccccchhhc
Q psy1488 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EASGWFPSAFVRLR 233 (630)
Q Consensus 178 ~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~-~~Ww~g~~~-g~~G~~P~~~v~~~ 233 (630)
.+.|+|||||.+++.|||+|++||.++++...| .||..|+++ |+.|++|+|||+.+
T Consensus 414 ~v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 414 FVRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 478999999999999999999999999988776 699999987 99999999999754
No 42
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.94 E-value=7.9e-10 Score=84.32 Aligned_cols=54 Identities=39% Similarity=0.780 Sum_probs=49.9
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCC-Cccccccccchhh
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EASGWFPSAFVRL 232 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~-g~~G~~P~~~v~~ 232 (630)
..++|+|+|.+..+++|+|++||+|.|++..+++||.++.. |+.||||.+||+.
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 57 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE 57 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence 46789999999999999999999999999988999999976 9999999999864
No 43
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.91 E-value=1.2e-09 Score=82.04 Aligned_cols=51 Identities=41% Similarity=0.788 Sum_probs=47.5
Q ss_pred EEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCC-ccccccccchh
Q psy1488 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVR 231 (630)
Q Consensus 181 ~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g-~~G~~P~~~v~ 231 (630)
++|+|+|.+..+++|+|.+||+|.|+...+++||.++..+ +.||||.+||+
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 6799999999999999999999999999889999999766 99999999985
No 44
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=98.89 E-value=6.6e-09 Score=93.66 Aligned_cols=105 Identities=18% Similarity=0.315 Sum_probs=57.0
Q ss_pred EEEeeeEEEEecCc-ceeEEEEEEeCCeEEEEEeccC-CCce-eEEEeEeecCcceeeeCCCCCCCC-------------
Q psy1488 485 LIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDIL-KRNT-HVYKARLNIDTSQIINLPDGKDPH------------- 548 (630)
Q Consensus 485 ll~~G~l~~~~~~~-~~~~~~~fLF~d~Ll~~k~~~~-~~~~-~~~k~~i~L~~~~v~~~~d~~~~~------------- 548 (630)
||++|+|.+...+. ...+.++||||++||+||.+.. +... .+|+.+|||+.+.|...+|.....
T Consensus 1 Li~~G~L~Rk~~~~~~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL~l~~~~d~~~~~~~~~r~s~s~~~~ 80 (135)
T PF15405_consen 1 LIYKGDLKRKGDNSFNWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELLVLESMDDPPPQRSIAKRPSSSLISS 80 (135)
T ss_dssp ----------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG-EEEE--TTTS---------S-----
T ss_pred CccccccccccccccccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHeeeecccCCCcccCcccccccCccCC
Confidence 58899998755433 2348999999999999998743 2233 478999999999998766543210
Q ss_pred -------------CCcccceeEEEEecCC-CeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 549 -------------LGVTVRHAIKIHCSDK-DKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 549 -------------~g~~~~~~f~I~~~~~-~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
......+.|.|.+-+. ...|+|.|.|+.+|+.|+++|.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~qq 135 (135)
T PF15405_consen 81 SSSNSNSPSNPNSSDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQQ 135 (135)
T ss_dssp --SHHHH--------TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccCCCCccceeeeccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhcC
Confidence 0012245677765444 3458999999999999999998764
No 45
>KOG4348|consensus
Probab=98.84 E-value=5.8e-10 Score=113.34 Aligned_cols=61 Identities=26% Similarity=0.591 Sum_probs=55.7
Q ss_pred eEEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhcccccc
Q psy1488 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 238 (630)
Q Consensus 178 ~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~~s~e~ 238 (630)
...|.++|.|.++++|||.|+.||+|.|+...++|||.|.++|+.|+||+|||.++....+
T Consensus 100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sd 160 (627)
T KOG4348|consen 100 ARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSD 160 (627)
T ss_pred ceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCc
Confidence 3579999999999999999999999999999999999999999999999999988754433
No 46
>KOG2996|consensus
Probab=98.82 E-value=2.9e-09 Score=111.97 Aligned_cols=56 Identities=38% Similarity=0.780 Sum_probs=50.7
Q ss_pred ceEEEEEeeccCCCCCCCCCCCCCCEEEEEEec--CCCcccccCCCccccccccchhh
Q psy1488 177 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRL 232 (630)
Q Consensus 177 ~~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~--~~~Ww~g~~~g~~G~~P~~~v~~ 232 (630)
.+..|.|-|||-+.+..||+|++||+|.|+++. |.|||.|+++|+.||||++||++
T Consensus 804 ~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee 861 (865)
T KOG2996|consen 804 VVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEE 861 (865)
T ss_pred eeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccc
Confidence 345788999999999999999999999999874 57999999999999999999975
No 47
>KOG4348|consensus
Probab=98.82 E-value=2.1e-09 Score=109.32 Aligned_cols=56 Identities=25% Similarity=0.513 Sum_probs=51.5
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEec--CCCcccccCCCccccccccchhhcc
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLRV 234 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~--~~~Ww~g~~~g~~G~~P~~~v~~~~ 234 (630)
-+|+.+|.|.++++|||+|++||+|.++.+. |.|||+|+++|+.|.||-|||+++.
T Consensus 262 eycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 262 EYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred hheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 4799999999999999999999999988763 5799999999999999999999875
No 48
>KOG0931|consensus
Probab=98.76 E-value=3.1e-08 Score=101.75 Aligned_cols=186 Identities=13% Similarity=0.175 Sum_probs=136.2
Q ss_pred CCccccchhhhhhhhccHHHHHHHHhcCCC----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy1488 399 IPLDGYLLTPVQRICKYPLQLAELLKYTKT----DHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWE 474 (630)
Q Consensus 399 l~L~s~Li~PvQRi~rY~LLL~~Llk~t~~----~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~ 474 (630)
.++.+--++|=+++. |++.+|+.-. .+-+++.|...|+.|+.---+.| .+....+..+.+.|.|.+
T Consensus 337 TDmySPnVKperkM~-----leDFikNLRGvDnGeDIpRell~GIYeRIqk~ELktn-----dDHVsqVqkVer~IVGkk 406 (627)
T KOG0931|consen 337 TDMYSPNVKPERKMK-----LEDFIKNLRGVDNGEDIPRELLVGIYERIQKRELKTN-----DDHVSQVQKVERAIVGKK 406 (627)
T ss_pred ccccCCCCCHHHhhh-----HHHHHHhccCCCCcccCcHHHHHHHHHHHHHhhcccC-----cchHHHHHHHHHHHhcCC
Confidence 567777788888754 6777777632 34457778888887765433333 344555666778899988
Q ss_pred CCCcccCCccEEEeeeEEEEecCcc-----eeEEEEEEeCCeEEEEEecc--CCCceeEEEeEeecCcceeeeCCCCCCC
Q psy1488 475 GEDLIETSSQLIHQGEVIRVTSGMW-----TNTITLFLFDHQLVYCKRDI--LKRNTHVYKARLNIDTSQIINLPDGKDP 547 (630)
Q Consensus 475 ~~~L~~~~r~ll~~G~l~~~~~~~~-----~~~~~~fLF~d~Ll~~k~~~--~~~~~~~~k~~i~L~~~~v~~~~d~~~~ 547 (630)
..-|..+.|+|+....|+.+....+ .++|-+|||||+||++|.-. ....+|.|+..+.|-.+.+.....+
T Consensus 407 ~~vLs~phRRLVC~crL~eV~Dpnk~Qk~~ahqReVFLFNDllVV~K~~~kkk~s~TYtf~qs~~Llgmhv~lFqn~--- 483 (627)
T KOG0931|consen 407 PPVLSLPHRRLVCYCRLFEVPDPNKPQKLGAHQREVFLFNDLLVVTKIFQKKKTSVTYTFRQSFLLLGMHVQLFQNG--- 483 (627)
T ss_pred CcccccCCceEEEEEeeeecCCCCchhhcccccceeeeecchhhhhhhhccCcceeEeehhhhhhHHHHHHHHHhhc---
Confidence 7678889999999999998765433 45899999999999998421 2235799999999999888766654
Q ss_pred CCCcccceeEEEEecCC----CeEEEEEeCCHHHHHHHHHHHHHHHHHHhhcccCCcc
Q psy1488 548 HLGVTVRHAIKIHCSDK----DKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLE 601 (630)
Q Consensus 548 ~~g~~~~~~f~I~~~~~----~~~~~l~a~s~~ek~~W~~~L~~a~~~~~~~~~~~~~ 601 (630)
.+.+.++|.+..+ .-.+.|.|.+.+|+.+|+.+|.+.|+.+++.....++
T Consensus 484 ----yY~fGitltsp~~g~e~k~~ihFnA~n~~dr~kFv~Dl~ESIaEvtEmEq~RiE 537 (627)
T KOG0931|consen 484 ----YYEFGITLTSPVPGSEKKVLIHFNAPNFQDRCKFVADLRESIAEVTEMEQVRIE 537 (627)
T ss_pred ----cccCceEEeccCCCCceeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456677766432 2468899999999999999999999999865544433
No 49
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.73 E-value=3.6e-07 Score=78.10 Aligned_cols=102 Identities=21% Similarity=0.284 Sum_probs=81.0
Q ss_pred EEEeeeEEEEe-cCcceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecC
Q psy1488 485 LIHQGEVIRVT-SGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSD 563 (630)
Q Consensus 485 ll~~G~l~~~~-~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~ 563 (630)
.+++|.|.+.. .....+.++++|+++.|++++... ..........|+|..+.|....+.+.. .+....++|.|....
T Consensus 1 ~~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~-~~~~~~~~~~i~l~~~~v~~~~~~~~~-~~~~~~~~f~i~~~~ 78 (104)
T PF00169_consen 1 CIKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSK-DKSDSKPKGSIPLDDCTVRPDPSSDFL-SNKKRKNCFEITTPN 78 (104)
T ss_dssp EEEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTT-TTTESSESEEEEGTTEEEEEETSSTST-STSSSSSEEEEEETT
T ss_pred CEEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCc-cccceeeeEEEEecCceEEEcCccccc-cccCCCcEEEEEeCC
Confidence 47899998776 344467999999999999998652 134677889999999999877665321 334568999998865
Q ss_pred CCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 564 KDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 564 ~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
. ..+.|.|.|.+++..|+++|+.++
T Consensus 79 ~-~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 79 G-KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp S-EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred C-cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 4 689999999999999999999886
No 50
>KOG1029|consensus
Probab=98.68 E-value=1.3e-08 Score=110.22 Aligned_cols=61 Identities=28% Similarity=0.539 Sum_probs=55.4
Q ss_pred ceEEEEEeeccCCCCCCCCCCCCCCEEEEEEe--cCCCcccccCCCccccccccchhhccccc
Q psy1488 177 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGTRGEASGWFPSAFVRLRVSQE 237 (630)
Q Consensus 177 ~~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~--~~~~Ww~g~~~g~~G~~P~~~v~~~~s~e 237 (630)
..+.++|||.|.+.+.+|++|..||+|.|-.+ .++||..|.++|+.||||.|||+.+...+
T Consensus 692 ~~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e 754 (1118)
T KOG1029|consen 692 DTVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVE 754 (1118)
T ss_pred ceEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCC
Confidence 35789999999999999999999999999765 45899999999999999999999887665
No 51
>KOG4269|consensus
Probab=98.60 E-value=1.2e-08 Score=112.16 Aligned_cols=259 Identities=19% Similarity=0.249 Sum_probs=192.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh----cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccC
Q psy1488 264 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR----RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWD 339 (630)
Q Consensus 264 ~~~~~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~----~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~ 339 (630)
.+-...|+.+.--++..|..|...+..+.-- .+|+.. ..+.+....++.||..+.+|+.+|..|...|....+.+
T Consensus 327 ek~~~~rkl~dS~f~~~d~~~~~s~d~l~l~-~~p~~al~~tsqp~~~~~~~~t~~~k~s~i~~~hk~~~~~l~pk~q~~ 405 (1112)
T KOG4269|consen 327 EKGLEMRKLVDSGFLASDEHYSQSLDALLLP-MKPLKALATTSQPVLTKQQIETIFNKFSPIYEIHKEFYDNLHPKVQQW 405 (1112)
T ss_pred hhhHHHHHHHhcccccccchhhcccchhhcc-cccccccCCCCCCCccccccccccccCCCchhhhhhhccccCchhhhh
Confidence 3445788888889999999999998766432 233332 34566778899999999999999999999998877544
Q ss_pred CCCcCcHHHHHHHhcCCcccHHHHhhC--hHHHHHHHHHHHhCC-chHHHHHHHHhhc------cCCCCCccccchhhhh
Q psy1488 340 APYKSCIGETFLKHKSGFRMYSEYCNS--HPMAIATLQELYQHN-NYSKFFEACRLMR------GLIEIPLDGYLLTPVQ 410 (630)
Q Consensus 340 ~~~~~~ig~vf~~~~~~~~~Y~~Y~~~--~~~a~~~l~~~~~~~-~f~~fl~~~~~~~------~~~~l~L~s~Li~PvQ 410 (630)
. .....|..|......+-.|..|..+ |..++..-..+.+.+ .|+..-++..-.. .....+....|.+|+-
T Consensus 406 ~-sqs~~~~~~~~L~S~l~n~~af~~~~sy~~al~~~~~~~sss~qfq~i~~~~~~~~n~~s~~sst~~~~~~~l~rpi~ 484 (1112)
T KOG4269|consen 406 K-SQSNSGGLFQKLASQLGNYLAFVDNESYLVALEMAEKCASSSPQFQCISEQLVVGVNKDSKDSSTWKDEEWLLYRPID 484 (1112)
T ss_pred h-hhhccCccchhhhhhcchhhhhhcchhhhhhcccccchhhcchhhhhhhhhheecccccccccCCccchhhhhccchh
Confidence 3 3467899999999999999999999 888877766666554 4544433322110 1123457778999999
Q ss_pred hhhccHHHHHHHHhcCCCCCccHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc
Q psy1488 411 RICKYPLQLAELLKYTKTDHPDYV----------KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIE 480 (630)
Q Consensus 411 Ri~rY~LLL~~Llk~t~~~~~d~~----------~L~~A~~~i~~l~~~vne~~~~~e~~~~l~~l~~~i~~~~~~~L~~ 480 (630)
|.++..+-|-++||++|-.|+|+- .|+.|++....++..+|+..... ++ +...+ ..
T Consensus 485 ~~~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~~~~----r~------~~f~k----s~ 550 (1112)
T KOG4269|consen 485 RVTSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKIEPR----RL------LEFLK----SG 550 (1112)
T ss_pred hhhHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchh----hh------hhhcc----cc
Confidence 999999999999999999999987 89999999999999999744321 11 11111 13
Q ss_pred CCccEEEeeeEEEEecCcceeEEEEEEeCCeEEEEEeccC---CCceeEEEeEeecCcceee
Q psy1488 481 TSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL---KRNTHVYKARLNIDTSQII 539 (630)
Q Consensus 481 ~~r~ll~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~---~~~~~~~k~~i~L~~~~v~ 539 (630)
..|++++.+.+..+.... ...+++|||.+.|+++|-+.. +...|..+..|||..+.|.
T Consensus 551 ~~rq~L~d~f~~~v~~~~-~~~~~~~~~~~~ll~tk~~~~k~~~nq~y~~~~~Ipl~d~~v~ 611 (1112)
T KOG4269|consen 551 ELRQLLKDVFFVEVEEAQ-RKLRHVFLFTNSLLCTKLKKLKDGKNQQYDCKWYIPLKDLQVN 611 (1112)
T ss_pred hhHhhhhhheeecccccc-ccchhhHHHhhccchhhhhhhcccccccCceeEEEeccccccC
Confidence 458888888877665443 347899999999999986543 3456888888999887764
No 52
>KOG1264|consensus
Probab=98.52 E-value=3.8e-08 Score=107.21 Aligned_cols=59 Identities=31% Similarity=0.638 Sum_probs=54.3
Q ss_pred eEEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCC-ccccccccchhhcccc
Q psy1488 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVRLRVSQ 236 (630)
Q Consensus 178 ~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g-~~G~~P~~~v~~~~s~ 236 (630)
.+.|+|||+|.|..+|||+|-+|-+|+++.++++|||.|..+| ..||||+|||+.+.+.
T Consensus 774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~ 833 (1267)
T KOG1264|consen 774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA 833 (1267)
T ss_pred chhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence 3679999999999999999999999999999999999999987 6799999999988663
No 53
>KOG4225|consensus
Probab=98.51 E-value=5.5e-08 Score=99.82 Aligned_cols=54 Identities=31% Similarity=0.634 Sum_probs=50.6
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCccccc--CCCccccccccchhh
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 232 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~--~~g~~G~~P~~~v~~ 232 (630)
..++|||.|.+++++||.|..||+|.|+++.|+||+.|+ ..|+.|.||-|||+.
T Consensus 433 l~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 433 LKYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred ccceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence 458999999999999999999999999999999999995 799999999999963
No 54
>KOG2546|consensus
Probab=98.50 E-value=1.5e-07 Score=96.21 Aligned_cols=54 Identities=30% Similarity=0.572 Sum_probs=51.5
Q ss_pred EEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhc
Q psy1488 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 233 (630)
Q Consensus 180 ~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~ 233 (630)
.+.++|||.+..++||+|.+|-+|.|+.+.|+|||+|-.+|.+|+||-|||+.+
T Consensus 425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~ 478 (483)
T KOG2546|consen 425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPL 478 (483)
T ss_pred HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCcccccc
Confidence 477999999999999999999999999999999999999999999999999865
No 55
>KOG4226|consensus
Probab=98.47 E-value=9.7e-08 Score=91.96 Aligned_cols=59 Identities=25% Similarity=0.539 Sum_probs=52.2
Q ss_pred eEEEEEeeccCCCCCCCCCCCCCCEEEEEEec--CCCccccc-CCCccccccccchhhcccc
Q psy1488 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGT-RGEASGWFPSAFVRLRVSQ 236 (630)
Q Consensus 178 ~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~--~~~Ww~g~-~~g~~G~~P~~~v~~~~s~ 236 (630)
...+.|||+|.+.++.||+|++||.+.|+++. |++||.++ ..|+.|++|.|||..+...
T Consensus 191 l~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~ 252 (379)
T KOG4226|consen 191 LHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDG 252 (379)
T ss_pred EEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccC
Confidence 44689999999999999999999999999874 57899999 5899999999999876543
No 56
>KOG4792|consensus
Probab=98.43 E-value=1.6e-07 Score=88.22 Aligned_cols=59 Identities=20% Similarity=0.503 Sum_probs=53.6
Q ss_pred CceEEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCccccc-CCCccccccccchhhcc
Q psy1488 176 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRV 234 (630)
Q Consensus 176 ~~~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~-~~g~~G~~P~~~v~~~~ 234 (630)
+..++++|+|||.+...++|.|++|++++|+++.+..||.++ ..|+.|++|.+||+...
T Consensus 122 ~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~ 181 (293)
T KOG4792|consen 122 EEAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYR 181 (293)
T ss_pred hhhhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhh
Confidence 345678999999999999999999999999999999999999 48999999999998653
No 57
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.42 E-value=4.5e-06 Score=70.34 Aligned_cols=98 Identities=18% Similarity=0.343 Sum_probs=74.3
Q ss_pred EEeeeEEEEec--CcceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecC
Q psy1488 486 IHQGEVIRVTS--GMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSD 563 (630)
Q Consensus 486 l~~G~l~~~~~--~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~ 563 (630)
+++|.|.+... ....+.++++|+++.|.+++.... .........|+|..+.|....+... ....++|.|....
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-~~~~~~~~~i~l~~~~v~~~~~~~~----~~~~~~f~l~~~~ 76 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKA-KKDYKPKGSIDLSGITVREAPDPDS----AKKPHCFEIKTAD 76 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCc-cccCCCceEEECCcCEEEeCCCCcc----CCCceEEEEEecC
Confidence 57888876654 344679999999999999987532 2236677889999998876655421 2346889887654
Q ss_pred CCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 564 KDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 564 ~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
. ..+.|.|.|++++..|+.+|..++
T Consensus 77 ~-~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 77 R-RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred C-ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 3 579999999999999999998765
No 58
>KOG0515|consensus
Probab=98.41 E-value=1.7e-07 Score=98.09 Aligned_cols=54 Identities=31% Similarity=0.745 Sum_probs=48.9
Q ss_pred EEEEeeccCCCCCCCCCCCCCCEEEEEEecC---CCcccccCCCccccccccchhhc
Q psy1488 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD---RDWWWGTRGEASGWFPSAFVRLR 233 (630)
Q Consensus 180 ~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~---~~Ww~g~~~g~~G~~P~~~v~~~ 233 (630)
.+-|+|||+++..|||+|++||.++|+++.| .+||+++++|++|++|.||+-+.
T Consensus 685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLy 741 (752)
T KOG0515|consen 685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLY 741 (752)
T ss_pred eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcC
Confidence 3668999999999999999999999999855 47999999999999999999654
No 59
>KOG3655|consensus
Probab=98.36 E-value=1.5e-07 Score=98.11 Aligned_cols=55 Identities=33% Similarity=0.674 Sum_probs=51.7
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccC-CCccccccccchhhc
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFVRLR 233 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~-~g~~G~~P~~~v~~~ 233 (630)
..++|+|||+|.++.|++|..+|.|++++..|.|||.|.. +|..|+||+|||+++
T Consensus 428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 4689999999999999999999999999999999999995 899999999999875
No 60
>KOG3601|consensus
Probab=98.34 E-value=6.8e-07 Score=83.78 Aligned_cols=54 Identities=31% Similarity=0.682 Sum_probs=51.6
Q ss_pred eEEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchh
Q psy1488 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231 (630)
Q Consensus 178 ~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~ 231 (630)
..++.|+|||+++.+++|.|++||.|.|++..+..||.|...|+.|+||++||.
T Consensus 163 ~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~ 216 (222)
T KOG3601|consen 163 NYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVA 216 (222)
T ss_pred chhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccc
Confidence 467899999999999999999999999999999999999999999999999994
No 61
>KOG1843|consensus
Probab=98.27 E-value=4.9e-07 Score=92.15 Aligned_cols=54 Identities=33% Similarity=0.745 Sum_probs=50.4
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecC--CCcccccCCCccccccccchhh
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRL 232 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~--~~Ww~g~~~g~~G~~P~~~v~~ 232 (630)
..+.|+|+|.++..++|+|++||+|+++.+.+ .+||.|+.+|++|+||.|||++
T Consensus 417 n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 417 NIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred ceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 47899999999999999999999999999876 5899999999999999999964
No 62
>PF15411 PH_10: Pleckstrin homology domain
Probab=98.18 E-value=2.8e-05 Score=68.02 Aligned_cols=96 Identities=17% Similarity=0.263 Sum_probs=70.2
Q ss_pred CccEEEeeeEEEEecCcceeEEEEEEeCCeEEEEEeccC---------------CCceeEEEeEeecCcceeeeCCCCCC
Q psy1488 482 SSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL---------------KRNTHVYKARLNIDTSQIINLPDGKD 546 (630)
Q Consensus 482 ~r~ll~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~---------------~~~~~~~k~~i~L~~~~v~~~~d~~~ 546 (630)
-++|+..|.+...+. ...++++||||..+||+||.... +...+.+|++|.+.++. ++.....
T Consensus 4 fG~Lll~g~~~V~k~-~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~--~v~~~s~ 80 (116)
T PF15411_consen 4 FGELLLHGTLTVGKD-DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNIT--EVSSSSK 80 (116)
T ss_pred ccceEEccEEEEEeC-CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeee--eeeccCC
Confidence 468999999987665 44679999999999999986321 23457899999998653 3322111
Q ss_pred CCCCcccceeEEEEec--CCCeEEEEEeCCHHHHHHHHHHH
Q psy1488 547 PHLGVTVRHAIKIHCS--DKDKWLLFCCRSLEDKARWLAAF 585 (630)
Q Consensus 547 ~~~g~~~~~~f~I~~~--~~~~~~~l~a~s~~ek~~W~~~L 585 (630)
...+.+.|... ..-..|+|.|.+++.++.|..+|
T Consensus 81 -----~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 81 -----PGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred -----CCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 23567778763 33468999999999999998765
No 63
>KOG1451|consensus
Probab=98.16 E-value=2.2e-05 Score=83.60 Aligned_cols=54 Identities=24% Similarity=0.471 Sum_probs=48.9
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEE-EEEecCCCcccccCCCccccccccchhh
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIE-VLDTLDRDWWWGTRGEASGWFPSAFVRL 232 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~-vl~~~~~~Ww~g~~~g~~G~~P~~~v~~ 232 (630)
..+.++|.+.+....+++|..|.++. |.....+||..|+++|++|++|+|||+.
T Consensus 757 rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~ 811 (812)
T KOG1451|consen 757 RRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEP 811 (812)
T ss_pred ccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCc
Confidence 46889999999999999999999998 4446779999999999999999999974
No 64
>KOG1702|consensus
Probab=98.11 E-value=1.2e-06 Score=81.08 Aligned_cols=54 Identities=26% Similarity=0.551 Sum_probs=49.8
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccC--CCccccccccchhh
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRL 232 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~--~g~~G~~P~~~v~~ 232 (630)
...+|+|||.|++.+|++|.-||.|.-....|+||.+|++ .|.+|..|+||++.
T Consensus 208 ktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~ 263 (264)
T KOG1702|consen 208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEF 263 (264)
T ss_pred ccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheee
Confidence 4577999999999999999999999999999999999984 89999999999975
No 65
>KOG3875|consensus
Probab=98.11 E-value=3.1e-07 Score=90.33 Aligned_cols=57 Identities=28% Similarity=0.554 Sum_probs=49.6
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCC-----Cccccc-C-CCccccccccchhhccc
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR-----DWWWGT-R-GEASGWFPSAFVRLRVS 235 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~-----~Ww~g~-~-~g~~G~~P~~~v~~~~s 235 (630)
..|+|+|||.+.++.||+|++||++.|+.+++. .||... . .|..||||.|||+++..
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 568999999999999999999999999887662 488866 4 67999999999998754
No 66
>KOG3523|consensus
Probab=98.08 E-value=9e-07 Score=94.52 Aligned_cols=60 Identities=28% Similarity=0.492 Sum_probs=54.8
Q ss_pred ceEEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCccccc--CCCccccccccchhhcccc
Q psy1488 177 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQ 236 (630)
Q Consensus 177 ~~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~--~~g~~G~~P~~~v~~~~s~ 236 (630)
.++.+.++..|.+..+|||+++.+|++.|+++.++||.+|. .+|..||||..||+.|.+.
T Consensus 607 dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~ 668 (695)
T KOG3523|consen 607 DCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNP 668 (695)
T ss_pred CCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCH
Confidence 45678899999999999999999999999999999999998 4899999999999988554
No 67
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.07 E-value=2e-05 Score=65.52 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=62.9
Q ss_pred ceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHHHH
Q psy1488 499 WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDK 578 (630)
Q Consensus 499 ~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek 578 (630)
..+.++++|+++.|.+++.... ...+.....|+|..+.|....+.. ...++|.|..... ..+.|+|.|.+++
T Consensus 15 ~w~~~~~~L~~~~l~~~~~~~~-~~~~~~~~~i~l~~~~v~~~~~~~------~~~~~f~i~~~~~-~~~~~~~~s~~~~ 86 (96)
T cd00821 15 GWKRRWFVLFNDLLLYYKKKSS-KKSYKPKGSIPLSGAEVEESPDDS------GRKNCFEIRTPDG-RSYLLQAESEEER 86 (96)
T ss_pred CccEEEEEEECCEEEEEECCCC-CcCCCCcceEEcCCCEEEECCCcC------CCCcEEEEecCCC-cEEEEEeCCHHHH
Confidence 3568999999999999986421 113667788899998887766543 2368899876543 6899999999999
Q ss_pred HHHHHHHHH
Q psy1488 579 ARWLAAFQQ 587 (630)
Q Consensus 579 ~~W~~~L~~ 587 (630)
..|+.+|+.
T Consensus 87 ~~W~~~l~~ 95 (96)
T cd00821 87 EEWIEALQS 95 (96)
T ss_pred HHHHHHHhc
Confidence 999999975
No 68
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=97.95 E-value=9.7e-05 Score=62.77 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=64.9
Q ss_pred EeeeEEEEec-Cc----ceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEe
Q psy1488 487 HQGEVIRVTS-GM----WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHC 561 (630)
Q Consensus 487 ~~G~l~~~~~-~~----~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~ 561 (630)
++|.|.+... +. ..+.|+|+|-++.|++-+.... -...+.|+|..+.|....+.. -.++|.|..
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~----~~~~~~I~L~~~~v~~~~~~~-------k~~~F~I~~ 70 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQD----EKAEGLIFLSGFTIESAKEVK-------KKYAFKVCH 70 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCC----CccceEEEccCCEEEEchhcC-------CceEEEECC
Confidence 3677766532 22 3568999999999999886522 224678999998876553322 267898864
Q ss_pred cCCCeEEEEEeCCHHHHHHHHHHHHHH
Q psy1488 562 SDKDKWLLFCCRSLEDKARWLAAFQQE 588 (630)
Q Consensus 562 ~~~~~~~~l~a~s~~ek~~W~~~L~~a 588 (630)
. ..+.|.|+|.|.++.+.|+.+|..|
T Consensus 71 ~-~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 P-VYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred C-CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 3 2378999999999999999999764
No 69
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.91 E-value=0.00015 Score=60.61 Aligned_cols=89 Identities=19% Similarity=0.197 Sum_probs=62.9
Q ss_pred eeeEEEEecC-cceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCe
Q psy1488 488 QGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDK 566 (630)
Q Consensus 488 ~G~l~~~~~~-~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~ 566 (630)
+|.|.+.... ...+.++|+|.++.|.+.+..... .....+.|+|..+.+.. .+. -.+.|.|.+. .++
T Consensus 2 ~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~--~~~~~~~i~l~~~~~~~-~~~--------~~~~F~i~~~-~~~ 69 (91)
T cd01246 2 EGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSM--RGKPRGTILLSGAVISE-DDS--------DDKCFTIDTG-GDK 69 (91)
T ss_pred eEEEEEecccCCCceeeEEEEECCEEEEEecCccC--CCCceEEEEeceEEEEE-CCC--------CCcEEEEEcC-CCC
Confidence 5666654321 235689999999999998865221 13566778888876543 211 1578998763 337
Q ss_pred EEEEEeCCHHHHHHHHHHHHHH
Q psy1488 567 WLLFCCRSLEDKARWLAAFQQE 588 (630)
Q Consensus 567 ~~~l~a~s~~ek~~W~~~L~~a 588 (630)
.|.|+|.|.+|+..|+.+|+.|
T Consensus 70 ~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 70 TLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred EEEEECCCHHHHHHHHHHHHhC
Confidence 8999999999999999999764
No 70
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=97.91 E-value=0.00018 Score=61.61 Aligned_cols=95 Identities=16% Similarity=0.092 Sum_probs=67.3
Q ss_pred EEeeeEEEEecC-cceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCC
Q psy1488 486 IHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDK 564 (630)
Q Consensus 486 l~~G~l~~~~~~-~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~ 564 (630)
+++|.|.+.... +..+.|+|.|-+..|.+-+.... ..-.+.|+|..+.|...++... ....+++|.|.. .
T Consensus 3 ~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~----~~~~~~I~L~~~~v~~~~~~~~---~~~~~~~F~I~t--~ 73 (100)
T cd01233 3 SKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKD----PVERGVINLSTARVEHSEDQAA---MVKGPNTFAVCT--K 73 (100)
T ss_pred ceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCC----ccEeeEEEecccEEEEccchhh---hcCCCcEEEEEC--C
Confidence 567777664432 23568999999999999886522 2346778899887765544211 011357899855 4
Q ss_pred CeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 565 DKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 565 ~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
++.|.|+|.|++|+..|+++|+...
T Consensus 74 ~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 74 HRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 6789999999999999999997653
No 71
>KOG2222|consensus
Probab=97.88 E-value=2.9e-06 Score=87.84 Aligned_cols=58 Identities=34% Similarity=0.680 Sum_probs=54.0
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhcccc
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ 236 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~~s~ 236 (630)
.+|+|+.||...+++||+|++.|+|+|+...|...|-|+++|-+||||+-||+++...
T Consensus 549 krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellder 606 (848)
T KOG2222|consen 549 KRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDER 606 (848)
T ss_pred HHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHhc
Confidence 4689999999999999999999999999999999999999999999999999987543
No 72
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.83 E-value=0.00034 Score=62.62 Aligned_cols=94 Identities=10% Similarity=0.151 Sum_probs=66.3
Q ss_pred EeeeEEEEecC-cceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCC-
Q psy1488 487 HQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDK- 564 (630)
Q Consensus 487 ~~G~l~~~~~~-~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~- 564 (630)
++|.|.+.... +..+.|+|.|-++.|.+-+... .-..++.|+|..+.|...++.. -+++|.|.....
T Consensus 2 k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~----~~~~~g~I~L~~~~v~~~~~~~-------~~~~F~i~~~~~~ 70 (125)
T cd01252 2 REGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTT----DKEPRGIIPLENVSIREVEDPS-------KPFCFELFSPSDK 70 (125)
T ss_pred cEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCC----CCCceEEEECCCcEEEEcccCC-------CCeeEEEECCccc
Confidence 35666544322 2356899999999988887432 1235788999988877654421 357888766432
Q ss_pred ------------------CeEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy1488 565 ------------------DKWLLFCCRSLEDKARWLAAFQQERAL 591 (630)
Q Consensus 565 ------------------~~~~~l~a~s~~ek~~W~~~L~~a~~~ 591 (630)
...|.|+|.|.+|+..|+.+|..++..
T Consensus 71 ~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 71 QQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred cccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999888753
No 73
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=97.82 E-value=0.00026 Score=59.11 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=60.0
Q ss_pred ceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecC-CCeEEEEEeCCHHH
Q psy1488 499 WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSD-KDKWLLFCCRSLED 577 (630)
Q Consensus 499 ~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~-~~~~~~l~a~s~~e 577 (630)
..+.++++|+++.|.+.+.+....... ..+++..+.|....++. ...++|.|.... ....+.|+|.+.++
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~~~~------~~~~~F~i~~~~~~~~~~~~~~~~~~~ 88 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDPDGS------DDPNCFAIVTKDRGRRVFVFQADSEEE 88 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECCCCC------CCCceEEEECCCCCcEEEEEEcCCHHH
Confidence 457899999999999998763322211 56788888766655432 235788887653 26789999999999
Q ss_pred HHHHHHHHHHH
Q psy1488 578 KARWLAAFQQE 588 (630)
Q Consensus 578 k~~W~~~L~~a 588 (630)
++.|+.+|..+
T Consensus 89 ~~~W~~al~~~ 99 (99)
T cd00900 89 AQEWVEALQQA 99 (99)
T ss_pred HHHHHHHHhcC
Confidence 99999999753
No 74
>KOG4429|consensus
Probab=97.78 E-value=1.1e-05 Score=78.84 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=52.2
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhcc
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 234 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~~ 234 (630)
..|.|+|+|++..++||...+||++.+.+....|||.|++.|..|-||+.||++..
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea~ 419 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEAL 419 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHhc
Confidence 56889999999999999999999999999999999999999999999999998653
No 75
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.74 E-value=0.0004 Score=59.08 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=57.9
Q ss_pred eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHHHHH
Q psy1488 500 TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKA 579 (630)
Q Consensus 500 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek~ 579 (630)
.+.|++.|=++.|.+-|.+..... ..+.|+|..+..+...+... ...+.+++|+|.+ ++++|.|+|.|+++++
T Consensus 19 WkrRwF~L~~~~L~y~K~~~~~~~---~~g~IdL~~~~sVk~~~~~~--~~~~~~~~Fei~t--p~rt~~l~A~se~e~e 91 (101)
T cd01264 19 WKTRYFTLSGAQLLFQKGKSKDDP---DDCSIDLSKIRSVKAVAKKR--RDRSLPKAFEIFT--ADKTYILKAKDEKNAE 91 (101)
T ss_pred ceeEEEEEeCCEEEEEeccCccCC---CCceEEcccceEEeeccccc--cccccCcEEEEEc--CCceEEEEeCCHHHHH
Confidence 357899999999877775422111 14678898887655433211 1123468999965 5578999999999999
Q ss_pred HHHHHHHHH
Q psy1488 580 RWLAAFQQE 588 (630)
Q Consensus 580 ~W~~~L~~a 588 (630)
.|+++|+.|
T Consensus 92 ~WI~~i~~a 100 (101)
T cd01264 92 EWLQCLNIA 100 (101)
T ss_pred HHHHHHHhh
Confidence 999999876
No 76
>KOG3771|consensus
Probab=97.74 E-value=0.00021 Score=75.24 Aligned_cols=58 Identities=24% Similarity=0.202 Sum_probs=49.6
Q ss_pred CCCceEEEEEeeccCCCCCCCCCCCCCCEEEEEEecC-CCcccccCCCccccccccchh
Q psy1488 174 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVR 231 (630)
Q Consensus 174 ~~~~~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~-~~Ww~g~~~g~~G~~P~~~v~ 231 (630)
.......++++|+|.++..+||+|+.||+|.|+...+ ..||.|.+.|..|-+|.+||.
T Consensus 396 ~p~~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 396 PPGFLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred CCCCccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence 3344568999999999999999999999999998654 689999999988888888875
No 77
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=97.72 E-value=0.00056 Score=57.42 Aligned_cols=76 Identities=12% Similarity=0.209 Sum_probs=56.9
Q ss_pred eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHHHHH
Q psy1488 500 TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKA 579 (630)
Q Consensus 500 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek~ 579 (630)
.+.|+++|=++.|.+.+.+... ....++.|+|..+.|... +.+ ++.|.|.... .+.|.|.|.|++|++
T Consensus 15 Wk~RwFvL~~g~L~Yyk~~~~~--~~~~~G~I~L~~~~i~~~-~~~--------~~~F~i~~~~-~r~~~L~A~s~~e~~ 82 (91)
T cd01247 15 WQDRYFVLKEGNLSYYKSEAEK--SHGCRGSIFLKKAIIAAH-EFD--------ENRFDISVNE-NVVWYLRAENSQSRL 82 (91)
T ss_pred CceEEEEEECCEEEEEecCccC--cCCCcEEEECcccEEEcC-CCC--------CCEEEEEeCC-CeEEEEEeCCHHHHH
Confidence 4689999988889898865321 124578999999877633 211 4678886543 378999999999999
Q ss_pred HHHHHHHH
Q psy1488 580 RWLAAFQQ 587 (630)
Q Consensus 580 ~W~~~L~~ 587 (630)
.|+++|+.
T Consensus 83 ~Wi~al~~ 90 (91)
T cd01247 83 LWMDSVVR 90 (91)
T ss_pred HHHHHHhh
Confidence 99999975
No 78
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=97.66 E-value=0.00045 Score=59.52 Aligned_cols=93 Identities=20% Similarity=0.345 Sum_probs=59.8
Q ss_pred eeeEEEEecC--cceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcce----eee-CCCCCCCCCCcccceeEEEE
Q psy1488 488 QGEVIRVTSG--MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQ----IIN-LPDGKDPHLGVTVRHAIKIH 560 (630)
Q Consensus 488 ~G~l~~~~~~--~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~----v~~-~~d~~~~~~g~~~~~~f~I~ 560 (630)
+|.|.+.... +..+.|+|.|=++.|.+-+.+.. ..-++.|+|..+. |.. .+++.. ....++|.|.
T Consensus 2 eG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d----~~~~G~I~L~~~~~~~~v~~~~~~~~~----~~~~~~F~i~ 73 (103)
T cd01251 2 EGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLD----AFAKGEVFLGSQEDGYEVREGLPPGTQ----GNHWYGVTLV 73 (103)
T ss_pred ceeEEecCCCCCCCceeEEEEEeCCEEEEECCCCC----cCcCcEEEeeccccceeEeccCCcccc----ccccceEEEE
Confidence 4555543321 22468899998888888875421 2345667776542 321 121111 0112488886
Q ss_pred ecCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q psy1488 561 CSDKDKWLLFCCRSLEDKARWLAAFQQERA 590 (630)
Q Consensus 561 ~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~ 590 (630)
+ +++.|.|+|.|++|+..|+++|+.++.
T Consensus 74 t--~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 74 T--PERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred e--CCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 6 577899999999999999999998875
No 79
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.62 E-value=0.00059 Score=59.12 Aligned_cols=84 Identities=14% Similarity=0.252 Sum_probs=56.8
Q ss_pred eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCC-CCCCcccceeEEEEecCCCeEEEEEeCCHHHH
Q psy1488 500 TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKD-PHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDK 578 (630)
Q Consensus 500 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~-~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek 578 (630)
.+.|+++|=++.|.+.+.+.. ..-.-++.|+|..+.......... ......-.++|.|... ++.|.+.|.|++|+
T Consensus 21 wKkRwFvL~~~~L~Yyk~~~~--~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~--~r~~yl~A~s~~er 96 (106)
T cd01238 21 YKERLFVLTKSKLSYYEGDFE--KRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHD--EGTLYVFAPTEELR 96 (106)
T ss_pred ceeEEEEEcCCEEEEECCCcc--cccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeC--CCeEEEEcCCHHHH
Confidence 468999998888888875421 122357889999987654332211 1011123578999774 34577789999999
Q ss_pred HHHHHHHHH
Q psy1488 579 ARWLAAFQQ 587 (630)
Q Consensus 579 ~~W~~~L~~ 587 (630)
+.|+++|++
T Consensus 97 ~~WI~ai~~ 105 (106)
T cd01238 97 KRWIKALKQ 105 (106)
T ss_pred HHHHHHHHh
Confidence 999999974
No 80
>KOG0930|consensus
Probab=97.60 E-value=0.00038 Score=68.01 Aligned_cols=95 Identities=13% Similarity=0.188 Sum_probs=71.9
Q ss_pred EeeeEEEEecCc--ceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEec--
Q psy1488 487 HQGEVIRVTSGM--WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCS-- 562 (630)
Q Consensus 487 ~~G~l~~~~~~~--~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~-- 562 (630)
++|.|.++..+. .++.|+++|-+++|-+..-...+. -++.|||.++.|..++|-.. ++||+|+..
T Consensus 262 REGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tTDKE----PrGIIpLeNlsir~VedP~k-------P~cfEly~ps~ 330 (395)
T KOG0930|consen 262 REGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTTDKE----PRGIIPLENLSIREVEDPKK-------PNCFELYIPSN 330 (395)
T ss_pred ccceeeeecCCcccchhheeEEeecceeeeeeeccCCC----CCcceeccccceeeccCCCC-------CCeEEEecCCC
Confidence 467777765422 246899999999999887654333 36889999999998887543 677777542
Q ss_pred ------------------CCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy1488 563 ------------------DKDKWLLFCCRSLEDKARWLAAFQQERALV 592 (630)
Q Consensus 563 ------------------~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~ 592 (630)
+....|-++|.+++|++.|++.|..++.+.
T Consensus 331 ~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~ 378 (395)
T KOG0930|consen 331 KGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRD 378 (395)
T ss_pred CcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccC
Confidence 344679999999999999999999888653
No 81
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=97.57 E-value=0.0012 Score=56.42 Aligned_cols=91 Identities=16% Similarity=0.251 Sum_probs=61.6
Q ss_pred EEEeeeEEEEecCcceeEEEEEEeCC------eEEEEEeccCCC-ceeEEEeEeecCcceeee-CCCCCCCCCCccccee
Q psy1488 485 LIHQGEVIRVTSGMWTNTITLFLFDH------QLVYCKRDILKR-NTHVYKARLNIDTSQIIN-LPDGKDPHLGVTVRHA 556 (630)
Q Consensus 485 ll~~G~l~~~~~~~~~~~~~~fLF~d------~Ll~~k~~~~~~-~~~~~k~~i~L~~~~v~~-~~d~~~~~~g~~~~~~ 556 (630)
++++|.|.+. +. .+.|+++|=.+ .|-+.+....-. ..-.-++.|+|..|..+. .++.. .+++
T Consensus 2 v~k~GyL~K~--K~-~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k-------~~~~ 71 (101)
T cd01257 2 VRKSGYLRKQ--KS-MHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAK-------HRHL 71 (101)
T ss_pred ccEEEEEeEe--cC-cEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccc-------cCeE
Confidence 4678888775 22 34688888877 566665421000 012356789999987543 33322 2588
Q ss_pred EEEEecCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy1488 557 IKIHCSDKDKWLLFCCRSLEDKARWLAAFQQ 587 (630)
Q Consensus 557 f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~ 587 (630)
|.|.+ +++.|.|.|.|++|++.|+++|.+
T Consensus 72 f~i~t--~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 72 IALYT--RDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEe--CCceEEEEeCCHHHHHHHHHHHhh
Confidence 88876 456899999999999999999964
No 82
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.50 E-value=0.001 Score=55.92 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=61.0
Q ss_pred eeeEEEEecC--cceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCC
Q psy1488 488 QGEVIRVTSG--MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKD 565 (630)
Q Consensus 488 ~G~l~~~~~~--~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~ 565 (630)
+|.|.+...+ ...+.|+|+|-++.|++-+... .........|+|..+.|...++.. ...++|.|....
T Consensus 2 ~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~--~~~~~~~~~i~l~~~~v~~~~~~~------~~~~~f~i~~~~-- 71 (94)
T cd01250 2 QGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLK--DYDNAHVKEIDLRRCTVRHNGKQP------DRRFCFEVISPT-- 71 (94)
T ss_pred cceEEEECCCcCCCceEEEEEEeCCeEEEEcCCc--ccccccceEEeccceEEecCcccc------CCceEEEEEcCC--
Confidence 4666554322 3356899999988888876431 111233456788877765554432 135789987644
Q ss_pred eEEEEEeCCHHHHHHHHHHHHH
Q psy1488 566 KWLLFCCRSLEDKARWLAAFQQ 587 (630)
Q Consensus 566 ~~~~l~a~s~~ek~~W~~~L~~ 587 (630)
+.|.|+|.|.++...|+.+|+.
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhc
Confidence 7899999999999999999975
No 83
>KOG1729|consensus
Probab=97.50 E-value=1.3e-05 Score=80.79 Aligned_cols=139 Identities=17% Similarity=0.153 Sum_probs=101.9
Q ss_pred CCCcccCCccEEEeeeEEEEecCcceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccc
Q psy1488 475 GEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVR 554 (630)
Q Consensus 475 ~~~L~~~~r~ll~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~ 554 (630)
+.++..++|.|+.+|.++....+. .+.+.+|||+|+++++..-.. ...|.-...++++.+.+....+.. .+.
T Consensus 36 ~~~~~~~grv~~~q~~~~k~~rk~-~q~r~~~l~~D~~~~~~~~~~-~~~~~~~~~~~le~~~~~~~~~~~------~~~ 107 (288)
T KOG1729|consen 36 GHPCRECGRVLCRQGTLVKRCRKK-LQSRSFFLFNDILVYGNIVSD-NKLLNKNHIIPLEGVSQESRSDNE------RVR 107 (288)
T ss_pred cCcccccchhhhhhhhhHHHHhcc-cccccccccccchhhcccccC-HHHHhHHhcccccchhhhhhcccc------ccc
Confidence 467888999999999996555444 678999999999999986532 225666667777666554443322 223
Q ss_pred eeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhhc---ccCCcccCHHHHHHHHHHHhhhhcCCCC
Q psy1488 555 HAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQD---REDGLEFAPAAKELARMSAARCHSSRPP 623 (630)
Q Consensus 555 ~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 623 (630)
+...|.+ ..+.+.+.+.+..+|..|+.+|.+++....+. ......-..+..|+.+.+|..|+.|.-+
T Consensus 108 ~~~~~~S--~~ks~~~~~as~~ek~e~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~W~PD~ea~~C~~C~~~ 177 (288)
T KOG1729|consen 108 NGWQILS--ALKSFTVLAASQTEKNEWQNHITECVEDLLSKNEEDGKSPSNNSAAVWLPDSEATECMVCGCT 177 (288)
T ss_pred cchhhhc--ccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhccCCCCCCcCCcccCcccceecccCCCc
Confidence 3444433 34567788999999999999999999887666 5556666777899999999999988763
No 84
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.45 E-value=0.00073 Score=57.25 Aligned_cols=77 Identities=12% Similarity=0.157 Sum_probs=52.8
Q ss_pred eEEEEEEeC----CeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHH
Q psy1488 501 NTITLFLFD----HQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLE 576 (630)
Q Consensus 501 ~~~~~fLF~----d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ 576 (630)
+.+++.|=+ .+|-+.+..... .-.+.|+|..+.|..+.+.. ..-+++|+|........|.++|++ +
T Consensus 17 K~rwF~l~~~~s~~~l~yf~~~~~~----~p~gli~l~~~~V~~v~ds~-----~~r~~cFel~~~~~~~~y~~~a~~-~ 86 (98)
T cd01245 17 KTLYFALILDGSRSHESLLSSPKKT----KPIGLIDLSDAYLYPVHDSL-----FGRPNCFQIVERALPTVYYSCRSS-E 86 (98)
T ss_pred ceeEEEEecCCCCceEEEEcCCCCC----CccceeeccccEEEEccccc-----cCCCeEEEEecCCCCeEEEEeCCH-H
Confidence 456666644 666666644221 22457889999887776632 123699999876544678887777 9
Q ss_pred HHHHHHHHHHH
Q psy1488 577 DKARWLAAFQQ 587 (630)
Q Consensus 577 ek~~W~~~L~~ 587 (630)
|+++||+.|+.
T Consensus 87 er~~Wi~~l~~ 97 (98)
T cd01245 87 ERDKWIESLQA 97 (98)
T ss_pred HHHHHHHHHhc
Confidence 99999999975
No 85
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.45 E-value=0.00049 Score=58.57 Aligned_cols=106 Identities=20% Similarity=0.308 Sum_probs=69.8
Q ss_pred ccCCccEEEeeeEEEEecCc--ceeEEEEEEeCCeEEEEEeccC-----C------C--ceeEEEeEeecCcce-eeeCC
Q psy1488 479 IETSSQLIHQGEVIRVTSGM--WTNTITLFLFDHQLVYCKRDIL-----K------R--NTHVYKARLNIDTSQ-IINLP 542 (630)
Q Consensus 479 ~~~~r~ll~~G~l~~~~~~~--~~~~~~~fLF~d~Ll~~k~~~~-----~------~--~~~~~k~~i~L~~~~-v~~~~ 542 (630)
+..+|.||..-+++.+.... +....++|||+|.|=+||++.. + . ..|.--.-|||..+. |+|+.
T Consensus 2 lSShRs~v~r~e~~eL~d~l~grGe~~tlFLfsD~lEi~kkR~kv~~~~KSP~~~~~~~~~~KHi~lmpLs~IkrVvdI~ 81 (129)
T cd01229 2 LSSHRSLVQRVETISLGEHLCDRGEQVTLFLFNDCLEIARKRHKVIGTFKSPHGSTRPPASLKHIHLMPLSQIKKVLDIR 81 (129)
T ss_pred ccchhhhhheeeeeeecccccCCCCeEEEEEecchHHHhhhcccccCCcCCCCCCCCCCcccceEEEeEhHHeEEEEeee
Confidence 45567788777777665321 2458899999999999997531 1 1 223334457777775 55676
Q ss_pred CCCCCCCCcccceeEEEEecC----CCeEEEEEeCC-HHHHHHHHHHHHHHHH
Q psy1488 543 DGKDPHLGVTVRHAIKIHCSD----KDKWLLFCCRS-LEDKARWLAAFQQERA 590 (630)
Q Consensus 543 d~~~~~~g~~~~~~f~I~~~~----~~~~~~l~a~s-~~ek~~W~~~L~~a~~ 590 (630)
|.++ .+++|-+.... ++..|.|+-.+ +.+|..|+..|.+.++
T Consensus 82 DtE~------c~~aF~L~~R~p~d~~~~L~sF~l~~Ee~~K~~~Lk~Lcr~~A 128 (129)
T cd01229 82 DTED------CHNAFALLVRPPTEQANVLLSFQMTSEELPKEVWLKMLCRHVA 128 (129)
T ss_pred cccc------ccceeEEEEeCCccchheEEEEEecCCcchHHHHHHHHHHHhc
Confidence 6543 46777776643 24667776444 5679999999987653
No 86
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=97.45 E-value=0.0028 Score=55.89 Aligned_cols=107 Identities=14% Similarity=0.275 Sum_probs=74.0
Q ss_pred CCccEEEeeeEEEEec----Cc--ceeEEEEEEeCCeEEEEEeccCCC----------------ceeEEEeEeecCccee
Q psy1488 481 TSSQLIHQGEVIRVTS----GM--WTNTITLFLFDHQLVYCKRDILKR----------------NTHVYKARLNIDTSQI 538 (630)
Q Consensus 481 ~~r~ll~~G~l~~~~~----~~--~~~~~~~fLF~d~Ll~~k~~~~~~----------------~~~~~k~~i~L~~~~v 538 (630)
..+.|++.+.+..+.. |+ +.-+..+|.|...+|+.-+...+. .-+.|+..||++.++|
T Consensus 23 smgdLL~h~~v~WLNp~~slgk~kKe~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQV 102 (160)
T cd01255 23 SPGDLLYHGGVEWLNPSDSLGKIKKELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQV 102 (160)
T ss_pred CHHHhhhhcceeeecCChhhccccCCceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeee
Confidence 3456677777665532 22 234688999999887665432221 2356999999999999
Q ss_pred eeCCCCCCCCCCcccceeEEEEec------CCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy1488 539 INLPDGKDPHLGVTVRHAIKIHCS------DKDKWLLFCCRSLEDKARWLAAFQQERALV 592 (630)
Q Consensus 539 ~~~~d~~~~~~g~~~~~~f~I~~~------~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~ 592 (630)
......+. ...+.++|.+. .+++.|.|||++++.|+.+++.++..++..
T Consensus 103 R~~n~ad~-----e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre~ 157 (160)
T cd01255 103 RASSAADM-----ESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRES 157 (160)
T ss_pred ecCCCcCc-----ccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 86654322 23456676653 256899999999999999999999887653
No 87
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.44 E-value=0.0017 Score=55.56 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=58.5
Q ss_pred eeeEEEEec-CcceeEEEEEEeCC--eEEEEEeccCCCceeEEEeEeecCcceeeeC-CCCCCCCCCcccceeEEEEecC
Q psy1488 488 QGEVIRVTS-GMWTNTITLFLFDH--QLVYCKRDILKRNTHVYKARLNIDTSQIINL-PDGKDPHLGVTVRHAIKIHCSD 563 (630)
Q Consensus 488 ~G~l~~~~~-~~~~~~~~~fLF~d--~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~-~d~~~~~~g~~~~~~f~I~~~~ 563 (630)
+|.|.+... .+..+.|++.|-.+ .|.+-+.. .....++.|+|..+..+.. .+...........+.|.|..
T Consensus 2 ~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~----~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t-- 75 (101)
T cd01235 2 EGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDF----EDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKT-- 75 (101)
T ss_pred eEEEEEcCCCCCCccceEEEEECCCCEEEEecCC----CCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEe--
Confidence 455554322 12346889998854 67777643 1234468888988764432 11110001111235566644
Q ss_pred CCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 564 KDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 564 ~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
..+.|.|.|.+++|+..|+.+|+.+|
T Consensus 76 ~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 76 SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 45689999999999999999998764
No 88
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.43 E-value=0.0015 Score=55.28 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=57.8
Q ss_pred eeEEEEecC---cceeEEEEEEeC--CeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecC
Q psy1488 489 GEVIRVTSG---MWTNTITLFLFD--HQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSD 563 (630)
Q Consensus 489 G~l~~~~~~---~~~~~~~~fLF~--d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~ 563 (630)
|.|.+.... +..+.|+++|=+ .+|.+.+... ...-.+.|+|..+.+...++. .++.|.|.+
T Consensus 3 GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~----d~~p~G~I~L~~~~~~~~~~~--------~~~~F~i~t-- 68 (95)
T cd01265 3 GYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQ----DAKPLGRVDLSGAAFTYDPRE--------EKGRFEIHS-- 68 (95)
T ss_pred ccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCC----cccccceEECCccEEEcCCCC--------CCCEEEEEc--
Confidence 555554321 224578777753 3566665431 224567888988776543322 256888865
Q ss_pred CCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 564 KDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 564 ~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
.++.|.|+|.|++|++.|+++|+.++
T Consensus 69 ~~r~y~l~A~s~~e~~~Wi~al~~~~ 94 (95)
T cd01265 69 NNEVIALKASSDKQMNYWLQALQSKR 94 (95)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhhc
Confidence 45689999999999999999998764
No 89
>KOG4792|consensus
Probab=97.37 E-value=0.00042 Score=65.69 Aligned_cols=60 Identities=22% Similarity=0.366 Sum_probs=51.1
Q ss_pred CceEEEEEeeccCCC--CCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhccc
Q psy1488 176 DFVVLAEAVWDHVAM--EAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 235 (630)
Q Consensus 176 ~~~~~~~aly~~~~~--~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~~s 235 (630)
..+.+|+++++-++. +...|.+++||+|.|+...-.|-|+|+++|+.|.||..||+....
T Consensus 225 ~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~ 286 (293)
T KOG4792|consen 225 NLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDV 286 (293)
T ss_pred CCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeecc
Confidence 345688888887765 455689999999999999999999999999999999999987643
No 90
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.30 E-value=0.0029 Score=54.38 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=54.4
Q ss_pred EEeeeEEEEecC-cceeEEEEEEe-CCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecC
Q psy1488 486 IHQGEVIRVTSG-MWTNTITLFLF-DHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSD 563 (630)
Q Consensus 486 l~~G~l~~~~~~-~~~~~~~~fLF-~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~ 563 (630)
+++|.|.+.... +..+.|+|.|- +..|++-+.+.. .. ....++|....|....... ....-.+.|.|.+.+
T Consensus 2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~--~~--~~~~i~l~~~~v~~~~~~~---~~~~~~~~F~i~~~~ 74 (102)
T cd01241 2 VKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPE--DG--DPFLPPLNNFSVAECQLMK---TERPRPNTFIIRCLQ 74 (102)
T ss_pred cEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCC--cc--CccccccCCeEEeeeeeee---ccCCCcceEEEEecc
Confidence 577887765432 22468999998 456766654321 11 1245666666542211000 000124678886422
Q ss_pred ----CCeEEEEEeCCHHHHHHHHHHHHHH
Q psy1488 564 ----KDKWLLFCCRSLEDKARWLAAFQQE 588 (630)
Q Consensus 564 ----~~~~~~l~a~s~~ek~~W~~~L~~a 588 (630)
.++ +|.|.|++|++.|+++|+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 233 56799999999999999764
No 91
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.14 E-value=0.0038 Score=53.60 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=54.4
Q ss_pred eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHHHHH
Q psy1488 500 TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKA 579 (630)
Q Consensus 500 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek~ 579 (630)
.+.|+++|.++-+|+..++.. ....-++.|+|+.+..+...++.. ...++|.|.. +++.|.|.|.|++|++
T Consensus 24 WkrRWFvL~~~~~L~y~~d~~--~~~~p~G~IdL~~~~~V~~~~~~~-----~~~~~f~I~t--p~R~f~l~Aete~E~~ 94 (104)
T cd01236 24 WQRRWFILYDHGLLTYALDEM--PTTLPQGTIDMNQCTDVVDAEART-----GQKFSICILT--PDKEHFIKAETKEEIS 94 (104)
T ss_pred ccceEEEEeCCCEEEEeeCCC--CCcccceEEEccceEEEeeccccc-----CCccEEEEEC--CCceEEEEeCCHHHHH
Confidence 357899999877777654311 122336889998887554332211 1257888855 5678999999999999
Q ss_pred HHHHHHHH
Q psy1488 580 RWLAAFQQ 587 (630)
Q Consensus 580 ~W~~~L~~ 587 (630)
.|+++|+.
T Consensus 95 ~Wi~~l~~ 102 (104)
T cd01236 95 WWLNMLMV 102 (104)
T ss_pred HHHHHHHh
Confidence 99999963
No 92
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.12 E-value=0.0045 Score=53.81 Aligned_cols=81 Identities=9% Similarity=0.050 Sum_probs=52.4
Q ss_pred eeEEEEEEeCCeE-------EEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEe
Q psy1488 500 TNTITLFLFDHQL-------VYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCC 572 (630)
Q Consensus 500 ~~~~~~fLF~d~L-------l~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a 572 (630)
.+.|+++|-++.+ .+-+.. .....++.|+|..+.+++...... .......+.|.|.. .++.|.|.|
T Consensus 19 WkrRwFvL~~~~l~~~~~~L~Yyk~~----~~~k~~g~I~L~~~~~v~~~~~~~-~~~~~~~~~f~i~t--~~r~y~l~A 91 (108)
T cd01266 19 WVRRYFVLHCGDRERNLFALEYYKTS----RKFKLEFVIDLESCSQVDPGLLCT-AGNCIFGYGFDIET--IVRDLYLVA 91 (108)
T ss_pred cEEEEEEEeccccCCCcceEEEECCC----CCCccceEEECCccEEEccccccc-ccCcccceEEEEEe--CCccEEEEE
Confidence 4689999987654 444422 223557889999976653321000 00012235577764 567899999
Q ss_pred CCHHHHHHHHHHHHH
Q psy1488 573 RSLEDKARWLAAFQQ 587 (630)
Q Consensus 573 ~s~~ek~~W~~~L~~ 587 (630)
.|++|++.|+.+|.+
T Consensus 92 ~s~ee~~~Wi~~I~~ 106 (108)
T cd01266 92 KNEEEMTLWVNCICK 106 (108)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999965
No 93
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.07 E-value=0.0067 Score=50.24 Aligned_cols=94 Identities=23% Similarity=0.315 Sum_probs=67.7
Q ss_pred EEeeeEEEEecC---cceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEec
Q psy1488 486 IHQGEVIRVTSG---MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCS 562 (630)
Q Consensus 486 l~~G~l~~~~~~---~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~ 562 (630)
|+.|.|.....+ ...+.++++|-++.|-+-+-...+.. +..|||+++.|.+++++-. +-+|+|.|...
T Consensus 2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~----kyilpLdnLk~Rdve~gf~-----sk~~~FeLfnp 72 (110)
T cd01256 2 IRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEK----KYMLPLDGLKLRDIEGGFM-----SRNHKFALFYP 72 (110)
T ss_pred eeeeeEEeeccceecCCCcceEEEEecceeeeecccccccc----cceeeccccEEEeeccccc-----CCCcEEEEEcC
Confidence 455665432211 12468999999999998886544444 4567999999999987632 34699998764
Q ss_pred CC------CeEEEEEeCCHHHHHHHHHHHHHH
Q psy1488 563 DK------DKWLLFCCRSLEDKARWLAAFQQE 588 (630)
Q Consensus 563 ~~------~~~~~l~a~s~~ek~~W~~~L~~a 588 (630)
.. .+.+.|+|.+.++-+.|...+-+|
T Consensus 73 d~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 73 DGRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 32 257899999999999999887654
No 94
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.07 E-value=0.0044 Score=52.68 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=57.7
Q ss_pred eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHHHHH
Q psy1488 500 TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKA 579 (630)
Q Consensus 500 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek~ 579 (630)
.+.|++.|=++.|.+.+... -.-++.|+|..+..+...+... . ...++|+|.+. ++.|.|+|.|++|++
T Consensus 21 ~KkRwF~Lt~~~L~Y~k~~~-----~~~~g~I~L~~i~~ve~v~~~~--~--~~~~~fqivt~--~r~~yi~a~s~~E~~ 89 (98)
T cd01244 21 FKKRYFQLTTTHLSWAKDVQ-----CKKSALIKLAAIKGTEPLSDKS--F--VNVDIITIVCE--DDTMQLQFEAPVEAT 89 (98)
T ss_pred CceeEEEECCCEEEEECCCC-----CceeeeEEccceEEEEEcCCcc--c--CCCceEEEEeC--CCeEEEECCCHHHHH
Confidence 46899999999999987431 3557889999987654333221 1 23578999774 458899999999999
Q ss_pred HHHHHHHH
Q psy1488 580 RWLAAFQQ 587 (630)
Q Consensus 580 ~W~~~L~~ 587 (630)
.|+.+|++
T Consensus 90 ~Wi~al~k 97 (98)
T cd01244 90 DWLNALEK 97 (98)
T ss_pred HHHHHHhc
Confidence 99999975
No 95
>KOG4773|consensus
Probab=97.05 E-value=6.1e-05 Score=75.75 Aligned_cols=55 Identities=31% Similarity=0.479 Sum_probs=51.9
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhc
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 233 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~ 233 (630)
..++|++||.+....||.|.+||++.++.+.+.+||.|+..|.+||||..|+...
T Consensus 176 q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~l 230 (386)
T KOG4773|consen 176 QRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQL 230 (386)
T ss_pred HHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhh
Confidence 4578999999999999999999999999999999999999999999999999866
No 96
>KOG2528|consensus
Probab=96.98 E-value=0.00032 Score=72.90 Aligned_cols=55 Identities=24% Similarity=0.455 Sum_probs=50.0
Q ss_pred EEEEeeccCCCCCCCCCCCCCCEEEEEEecC-CCccccc-CCCccccccccchhhcc
Q psy1488 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT-RGEASGWFPSAFVRLRV 234 (630)
Q Consensus 180 ~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~-~~Ww~g~-~~g~~G~~P~~~v~~~~ 234 (630)
+++|+|||.+.+..||+...||++.++.... +|||+|. ..|.+|+||..||++..
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR 60 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence 5789999999999999999999999998866 7999999 48999999999998754
No 97
>KOG4575|consensus
Probab=96.97 E-value=0.00066 Score=73.16 Aligned_cols=53 Identities=30% Similarity=0.594 Sum_probs=44.3
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCccccc--CCCccccccccchh
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 231 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~--~~g~~G~~P~~~v~ 231 (630)
..++|+|.+.++.+++|.|.+||+|+++.-.++-||-+. .....|+||+|||.
T Consensus 9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvh 63 (874)
T KOG4575|consen 9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVH 63 (874)
T ss_pred ceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCccccee
Confidence 568999999999999999999999999987655444444 35678999999993
No 98
>KOG3524|consensus
Probab=96.92 E-value=0.0065 Score=66.70 Aligned_cols=182 Identities=5% Similarity=-0.116 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh----cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCCCCc
Q psy1488 268 QVRSRVVRELINTERDFVKVLHDVSEGYLAECRR----RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYK 343 (630)
Q Consensus 268 ~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~----~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~~~~ 343 (630)
..+.....+|+.|+.+|++.+-..+..+-.|+.+ ...+....++..+|..+.+++.-|.....++++.+..--
T Consensus 393 y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~nw~e~k~el~kay--- 469 (850)
T KOG3524|consen 393 YCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQNWIEAKEELKKAY--- 469 (850)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHhhHHHHHHHHHhc---
Confidence 3456778899999999999877666666666654 344556788999999999988888877777775432111
Q ss_pred CcHHHHHHHhcCCcccHHHHhhChHHHHHHHHHHHhC-CchHHHHHHHHhhccCCCCCccccchhhhhhhhccHHHHHHH
Q psy1488 344 SCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQH-NNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAEL 422 (630)
Q Consensus 344 ~~ig~vf~~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~-~~f~~fl~~~~~~~~~~~l~L~s~Li~PvQRi~rY~LLL~~L 422 (630)
=.+..+|+.|..++..+++--..+..+.+. ..+-+|...-.....+.....--.++.|+|+|.+ +....+
T Consensus 470 -------ppyvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirpvqrlpsvilllndl~k--~s~N~d 540 (850)
T KOG3524|consen 470 -------PPYVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLPSVILLLNDMAK--KSDNKD 540 (850)
T ss_pred -------cchhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhcccchhccchhhhhHHHHHHHHHHh--hccCcc
Confidence 112233344444444333333333333333 3555666554444444455555679999999999 777888
Q ss_pred HhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1488 423 LKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLE 461 (630)
Q Consensus 423 lk~t~~~~~d~~~L~~A~~~i~~l~~~vne~~~~~e~~~ 461 (630)
-+++.+..++...+..++...++..+.+++-.+..+.++
T Consensus 541 k~~leea~kaikev~khInedKrkte~~~~ifdkf~die 579 (850)
T KOG3524|consen 541 KNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIE 579 (850)
T ss_pred hhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhh
Confidence 888888888888999999999999999988877766544
No 99
>KOG4278|consensus
Probab=96.91 E-value=0.00092 Score=72.59 Aligned_cols=59 Identities=27% Similarity=0.440 Sum_probs=49.4
Q ss_pred eEEEEEeeccCCCCCCCCCCCCCCEEEEEEecC-CCcccccC-CCccccccccchhhccccc
Q psy1488 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTR-GEASGWFPSAFVRLRVSQE 237 (630)
Q Consensus 178 ~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~-~~Ww~g~~-~g~~G~~P~~~v~~~~s~e 237 (630)
+....|||||.+.++..|++.+||.+.||.-.. +.|.+.+. +|+ ||+|+||+....+-+
T Consensus 90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNSLe 150 (1157)
T KOG4278|consen 90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNSLE 150 (1157)
T ss_pred CceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccchh
Confidence 346679999999999999999999999998765 56888875 566 999999998776544
No 100
>KOG3632|consensus
Probab=96.91 E-value=0.0036 Score=70.90 Aligned_cols=57 Identities=28% Similarity=0.466 Sum_probs=48.5
Q ss_pred eEEEEEeeccCCC--------CCCCCCCCCCCEEEEEEecC-CCcccccCCCccccccccchhhcc
Q psy1488 178 VVLAEAVWDHVAM--------EAEELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVRLRV 234 (630)
Q Consensus 178 ~~~~~aly~~~~~--------~~~eL~f~~gd~i~vl~~~~-~~Ww~g~~~g~~G~~P~~~v~~~~ 234 (630)
.....|+|||.+. .+.||.|++|++|.|+...| +|++.|+++|+.|++|.|+|.++.
T Consensus 1138 arifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1138 ARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred ceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccccccccccccccccccc
Confidence 3467799999863 35789999999999998766 799999999999999999997653
No 101
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.81 E-value=0.013 Score=50.41 Aligned_cols=81 Identities=14% Similarity=0.230 Sum_probs=52.2
Q ss_pred eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHHHHH
Q psy1488 500 TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKA 579 (630)
Q Consensus 500 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek~ 579 (630)
.+.+++.|-.+.|++.+-.........-...|.+..+.|....+.. .-++.|.|... ....|.|+|.+.++.+
T Consensus 23 Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~------k~~~~F~l~~~-~~~~~~f~a~s~e~~~ 95 (104)
T cd01253 23 WDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYT------KKKHVFRLRLP-DGAEFLFQAPDEEEMS 95 (104)
T ss_pred cceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcc------cCceEEEEEec-CCCEEEEECCCHHHHH
Confidence 4689999999999888743211001100114556555553332211 12588998754 4468999999999999
Q ss_pred HHHHHHHH
Q psy1488 580 RWLAAFQQ 587 (630)
Q Consensus 580 ~W~~~L~~ 587 (630)
.|+.+|+.
T Consensus 96 ~Wi~aL~~ 103 (104)
T cd01253 96 SWVRALKS 103 (104)
T ss_pred HHHHHHhc
Confidence 99999964
No 102
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.81 E-value=0.011 Score=52.36 Aligned_cols=86 Identities=8% Similarity=0.038 Sum_probs=55.5
Q ss_pred eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCC---------------
Q psy1488 500 TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDK--------------- 564 (630)
Q Consensus 500 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~--------------- 564 (630)
.+.|+|.|...+|.+-+.... .....-.+.|+|..+.+..+.+... ....-+++|.|.+...
T Consensus 19 W~RRWFvL~g~~L~y~k~p~d-~~~~~Plg~I~L~~c~~~~v~~~~r--~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~ 95 (122)
T cd01263 19 WHRRWCALEGGEIKYWKYPDD-EKRKGPTGLIDLSTCTSSEGASAVR--DICARPNTFHLDVWRPKMETDDETLVSQCRR 95 (122)
T ss_pred ceEEEEEEeCCEEEEEcCCCc-cccCCceEEEEhhhCcccccccCCh--hhcCCCCeEEEEEecccccccccceeeccCC
Confidence 457888888776666654322 2234456788999988766643321 1123467788754211
Q ss_pred ---CeEEEEEeCCHHHHHHHHHHHHHH
Q psy1488 565 ---DKWLLFCCRSLEDKARWLAAFQQE 588 (630)
Q Consensus 565 ---~~~~~l~a~s~~ek~~W~~~L~~a 588 (630)
...+.|.|.|.+|++.|+.+|+++
T Consensus 96 ~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 96 GIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred ceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 113678899999999999999864
No 103
>KOG3725|consensus
Probab=96.80 E-value=0.00099 Score=64.24 Aligned_cols=56 Identities=30% Similarity=0.540 Sum_probs=50.7
Q ss_pred eEEEEEeeccCCCCCCCCCCCCCCEEEEEEe--cCCCcccccCCCccccccccchhhc
Q psy1488 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGTRGEASGWFPSAFVRLR 233 (630)
Q Consensus 178 ~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~--~~~~Ww~g~~~g~~G~~P~~~v~~~ 233 (630)
...++++|||.+..+.||++-..|+|+|... .|.+|.-|+.+++.|-+|..|++++
T Consensus 317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 4679999999999999999999999999876 4678999999999999999999864
No 104
>KOG0609|consensus
Probab=96.77 E-value=0.00083 Score=71.94 Aligned_cols=55 Identities=29% Similarity=0.587 Sum_probs=46.9
Q ss_pred eEEEEEeeccCCCCCC-------CCCCCCCCEEEEEEecCCCcccccCC-----Cccccccccchhh
Q psy1488 178 VVLAEAVWDHVAMEAE-------ELGFRAGDVIEVLDTLDRDWWWGTRG-----EASGWFPSAFVRL 232 (630)
Q Consensus 178 ~~~~~aly~~~~~~~~-------eL~f~~gd~i~vl~~~~~~Ww~g~~~-----g~~G~~P~~~v~~ 232 (630)
.++++|+|||.+..++ .|.|++||++.|+++.|..||++... +..|++|+...+.
T Consensus 214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence 5789999999987754 48899999999999999999998853 5789999977754
No 105
>KOG3601|consensus
Probab=96.70 E-value=0.00033 Score=66.09 Aligned_cols=52 Identities=29% Similarity=0.500 Sum_probs=47.5
Q ss_pred EEEeeccCCCCCCCCCCCCCCEEEEEEecC-CCcccccCCCccccccccchhh
Q psy1488 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVRL 232 (630)
Q Consensus 181 ~~aly~~~~~~~~eL~f~~gd~i~vl~~~~-~~Ww~g~~~g~~G~~P~~~v~~ 232 (630)
+.++|+|.+...+||+|.+||.+.+++..| .+|...+++|..|++|.||.+.
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM 55 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence 568899999999999999999999999866 5899999999999999999964
No 106
>KOG0197|consensus
Probab=96.59 E-value=0.0013 Score=70.44 Aligned_cols=55 Identities=33% Similarity=0.684 Sum_probs=49.0
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCE-EEEEEecCCCcccccC--CCccccccccchhhc
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDV-IEVLDTLDRDWWWGTR--GEASGWFPSAFVRLR 233 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~-i~vl~~~~~~Ww~g~~--~g~~G~~P~~~v~~~ 233 (630)
..+.|+|+|.+..+.+|+|.+||+ ..+++..+.+||..+. .|..|++|+|||...
T Consensus 12 ~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 12 TIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred ceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence 467899999999999999999999 7788888899999873 789999999999753
No 107
>KOG3775|consensus
Probab=96.40 E-value=0.0016 Score=66.14 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=50.0
Q ss_pred EEEeeccCCCCCCCCCCCCCCEEEEEEecCCCccccc--CCCccccccccchhhcccc
Q psy1488 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQ 236 (630)
Q Consensus 181 ~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~--~~g~~G~~P~~~v~~~~s~ 236 (630)
=++++.|.+..++||.+..||-|.|-...++-|.+|. ..|++|+||+.|+-.+.-.
T Consensus 265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~ 322 (482)
T KOG3775|consen 265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP 322 (482)
T ss_pred hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCc
Confidence 4688999999999999999999999999999999998 4899999999999766433
No 108
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.39 E-value=0.046 Score=48.02 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=59.2
Q ss_pred eeEEEEEEeCCeEEEEEeccCCCc--ee-EEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHH
Q psy1488 500 TNTITLFLFDHQLVYCKRDILKRN--TH-VYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLE 576 (630)
Q Consensus 500 ~~~~~~fLF~d~Ll~~k~~~~~~~--~~-~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ 576 (630)
++.+|+.|-.+.|.+.|-...... .+ .+...|.|......-..+-. .-++.|.|...+ ...|+|+|.+.+
T Consensus 26 Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~------Kr~~VF~L~~~~-g~~~lfqA~~~e 98 (117)
T cd01230 26 WKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYS------KKPHVFRLRTAD-WREFLFQTSSLK 98 (117)
T ss_pred ceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeecccc------CCCcEEEEEcCC-CCEEEEECCCHH
Confidence 568999999999888875421111 22 34677888876533222211 236788887643 357999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1488 577 DKARWLAAFQQERALV 592 (630)
Q Consensus 577 ek~~W~~~L~~a~~~~ 592 (630)
|.+.|+.+|+.+....
T Consensus 99 e~~~Wi~~I~~~~~~~ 114 (117)
T cd01230 99 ELQSWIERINVVAAAF 114 (117)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999877654
No 109
>KOG0521|consensus
Probab=96.25 E-value=0.16 Score=59.08 Aligned_cols=307 Identities=15% Similarity=0.160 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhc--CCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCCCCcCc
Q psy1488 268 QVRSRVVRELINTERDFVKVLHDVSEGYLAECRRR--NDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSC 345 (630)
Q Consensus 268 ~kR~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~--~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~~~~~~ 345 (630)
.+-...+.+++..-..|+...+.+...+..++... ..++ .+-+..+=.-+.++..+|..|...+...+..+.. .
T Consensus 38 ~k~~~~~~~~~~~~~~~~~~~~~f~~~~~d~~~~~~~~~~~-~~~l~~fs~~~~e~~~~~~~L~~q~~~~~~~~l~---~ 113 (785)
T KOG0521|consen 38 NKLLKAMTRKYDAGKEFVQATEQFGKGLKDLFSLGQDEEVI-SETLQKFSKVLRELGTYHTELRSQLAHTLSLPLS---Q 113 (785)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccCchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---H
Confidence 34445555666666666665555544433332211 1111 2222232334678899999998888877642111 1
Q ss_pred HHHHHHHhcCCcc-cHHHHhhChHHHHHHHHHHHhCCchHHHHHH----HHhhccCCCCCccccchhh-hhhhhccHHHH
Q psy1488 346 IGETFLKHKSGFR-MYSEYCNSHPMAIATLQELYQHNNYSKFFEA----CRLMRGLIEIPLDGYLLTP-VQRICKYPLQL 419 (630)
Q Consensus 346 ig~vf~~~~~~~~-~Y~~Y~~~~~~a~~~l~~~~~~~~f~~fl~~----~~~~~~~~~l~L~s~Li~P-vQRi~rY~LLL 419 (630)
+...=+..+...+ .+-.=+..|+.++..+.++.++.+ .++... ......+-...-.+|+..+ +....+=..+|
T Consensus 114 f~k~dl~~v~~~kk~f~ka~~~~d~a~~k~~~l~k~~~-~~~~~e~~~~l~~~r~~f~~~~~~y~~~ln~~q~kk~~~~l 192 (785)
T KOG0521|consen 114 FVKGDLHEVKELKKLFEKASEEYDLALVKYSRLPKKRR-SKVKTEVEEELAAARRKFQLTALDYVLALNVLQAKKQFEIL 192 (785)
T ss_pred HHHHHHHHhhhhhHHHHHHHhhHHHHHHHhhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHH
Confidence 1111111222222 444556667777777776665542 222211 1111111111222233222 33444555677
Q ss_pred HHHHhcCCCC----CccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh--hcCCCCCCcccCCc---
Q psy1488 420 AELLKYTKTD----HPDYVKITEALEAMRDVAMLINERK-------RRMESLEKLAAWQQR--VEGWEGEDLIETSS--- 483 (630)
Q Consensus 420 ~~Llk~t~~~----~~d~~~L~~A~~~i~~l~~~vne~~-------~~~e~~~~l~~l~~~--i~~~~~~~L~~~~r--- 483 (630)
+.++...... +..+..+.+.-.-++.|...+.... +.++... .++... +...+...-..+..
T Consensus 193 e~~l~~~~aq~~fF~~g~~l~~~m~p~~~~i~~~v~ql~~~~~~e~~am~~~~--q~l~~~~~~~~~~~~~~~~~~~~~~ 270 (785)
T KOG0521|consen 193 ETLLGFMHAQINFFKQGEDLLSQMDPYIKKVATYVQQLREESDAEQRAMEQRY--QELRSASNLESRPKSDSASPSGGNL 270 (785)
T ss_pred HHHHHHHHhccchhcccHhHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhHH--HHHHHHhhhhhhccccccccccccc
Confidence 7777754322 2223333333333333333333322 2222211 112111 11111000000110
Q ss_pred --cEEEeeeEEEEecC--cceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEE
Q psy1488 484 --QLIHQGEVIRVTSG--MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKI 559 (630)
Q Consensus 484 --~ll~~G~l~~~~~~--~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I 559 (630)
.....|.+.+.... ..+..++++.=+..+.+-.+.....+ ....+|..+.|...++.. ..++||+|
T Consensus 271 ~~~~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~~~~------drr~CF~i 340 (785)
T KOG0521|consen 271 KLGYRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDAEQR------DRRFCFEI 340 (785)
T ss_pred cchhhhhhhhhhhcccchhhHHhhhhhhhccccccccccccccc----cccccchhccccCCcccc------cceeeEEE
Confidence 11111222211111 11234556665555555544321111 344566677766555542 24799999
Q ss_pred EecCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q psy1488 560 HCSDKDKWLLFCCRSLEDKARWLAAFQQERALVE 593 (630)
Q Consensus 560 ~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~~ 593 (630)
.+ ..+.|+|+|.+..+...|+.+|+..+...-
T Consensus 341 iS--~tks~~lQAes~~d~~~Wi~~i~nsi~s~l 372 (785)
T KOG0521|consen 341 IS--PTKSYLLQAESEKDCQDWISALQNSILSAL 372 (785)
T ss_pred ec--CCcceEEecCchhHHHHHHHHHHHHHHHHH
Confidence 87 667899999999999999999999987643
No 110
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.09 E-value=0.05 Score=46.30 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=39.2
Q ss_pred eEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHH
Q psy1488 529 ARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQ 586 (630)
Q Consensus 529 ~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~ 586 (630)
..|.|..|.+...+..+ -.+||.|........++|+|.|+.++..|++++.
T Consensus 52 e~~~l~sc~~r~~~~~d-------RRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 52 ETLTLKSCSRRKTESID-------KRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eEEeeeeccccccCCcc-------ceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 34566667665544433 3799999887776789999999999999999874
No 111
>KOG3557|consensus
Probab=96.08 E-value=0.002 Score=70.11 Aligned_cols=56 Identities=29% Similarity=0.535 Sum_probs=49.0
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCccccc-CCCccccccccchhhccc
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS 235 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~-~~g~~G~~P~~~v~~~~s 235 (630)
.++..+|||.|++..||+..+||+++|++. ..+||+.+ -.|+.|++|.|.+..+..
T Consensus 501 k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~ 557 (721)
T KOG3557|consen 501 KWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQP 557 (721)
T ss_pred eeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCC
Confidence 478899999999999999999999999975 36899988 489999999999976543
No 112
>PF15409 PH_8: Pleckstrin homology domain
Probab=95.88 E-value=0.18 Score=41.87 Aligned_cols=73 Identities=21% Similarity=0.369 Sum_probs=50.7
Q ss_pred eeEEEEEE-eCCeEE-EEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHHH
Q psy1488 500 TNTITLFL-FDHQLV-YCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLED 577 (630)
Q Consensus 500 ~~~~~~fL-F~d~Ll-~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~e 577 (630)
.+.|+++| |++.+| +.+-. ... ..++.|++....|. +.. + ...|.|- ...+.+.|.|.|+++
T Consensus 14 ~~kRyFvL~~~~G~LsYy~~~---~~~-~~rGsi~v~~a~is-~~~-~--------~~~I~id--sg~~i~hLKa~s~~~ 77 (89)
T PF15409_consen 14 WHKRYFVLDFEKGTLSYYRNQ---NSG-KLRGSIDVSLAVIS-ANK-K--------SRRIDID--SGDEIWHLKAKSQED 77 (89)
T ss_pred ceeEEEEEEcCCcEEEEEecC---CCC-eeEeEEEccceEEE-ecC-C--------CCEEEEE--cCCeEEEEEcCCHHH
Confidence 35788888 676655 44422 111 77899999888653 322 1 2456664 356689999999999
Q ss_pred HHHHHHHHHHH
Q psy1488 578 KARWLAAFQQE 588 (630)
Q Consensus 578 k~~W~~~L~~a 588 (630)
.+.|+.+|+.|
T Consensus 78 f~~Wv~aL~~a 88 (89)
T PF15409_consen 78 FQRWVSALQKA 88 (89)
T ss_pred HHHHHHHHHhc
Confidence 99999999876
No 113
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.85 E-value=0.22 Score=55.58 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=60.9
Q ss_pred cccCCccEEEeeeEEEEecCcceeEEEEEEeCC----eEEEEEeccCCC----------ceeEEEeEeecCcceeeeCCC
Q psy1488 478 LIETSSQLIHQGEVIRVTSGMWTNTITLFLFDH----QLVYCKRDILKR----------NTHVYKARLNIDTSQIINLPD 543 (630)
Q Consensus 478 L~~~~r~ll~~G~l~~~~~~~~~~~~~~fLF~d----~Ll~~k~~~~~~----------~~~~~k~~i~L~~~~v~~~~d 543 (630)
+...+...++.|.+.+......++.+++-+..+ ..+..... .+- .....+..|.+..-.+.++..
T Consensus 366 ~~~~~~~~~~~g~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (496)
T PTZ00283 366 LTTLGGLTLYEGIVKKQSSDLSWKRRYLCIRGELEKGETLTVDVA-PKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFP 444 (496)
T ss_pred ccccCCceeeeeEEecccCCcccceeEEEEeeecccCceeecCCC-ccchhhhhhhhhhhhhhhhhcccCchhhhccccc
Confidence 344556778889887765555566777777632 22211111 000 001122333222222222221
Q ss_pred CCCCCCCcccceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 544 GKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 544 ~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
-.....+...+|.|.+.+.+ .+.+.|+|.+.++++.|+.+|++++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 445 VPSKYTGSNAAHVFAVAFKT-GRRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred ccHHhhCCCCCcEEEEEecC-CcEEEEecCCchhHHHHHHHHHHhc
Confidence 11112333457888887753 4579999999999999999998875
No 114
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=95.63 E-value=0.36 Score=41.42 Aligned_cols=96 Identities=16% Similarity=0.298 Sum_probs=63.5
Q ss_pred cccCCccEEEeeeEEEEecCcceeEEEEEEeCC-eEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCccccee
Q psy1488 478 LIETSSQLIHQGEVIRVTSGMWTNTITLFLFDH-QLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHA 556 (630)
Q Consensus 478 L~~~~r~ll~~G~l~~~~~~~~~~~~~~fLF~d-~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~ 556 (630)
++.++...+++|.|.+. .|...+.|.++|-+. .|++..+. ..+.|+.|++....-....+ ...
T Consensus 6 fl~~ge~Il~~g~v~K~-kgl~~kkR~liLTd~PrL~Yvdp~-----~~~~KGeI~~~~~l~v~~k~----------~~~ 69 (104)
T PF14593_consen 6 FLNPGELILKQGYVKKR-KGLFAKKRQLILTDGPRLFYVDPK-----KMVLKGEIPWSKELSVEVKS----------FKT 69 (104)
T ss_dssp GTT-T--EEEEEEEEEE-ETTEEEEEEEEEETTTEEEEEETT-----TTEEEEEE--STT-EEEECS----------SSE
T ss_pred hhcCCCeEEEEEEEEEe-eceEEEEEEEEEccCCEEEEEECC-----CCeECcEEecCCceEEEEcc----------CCE
Confidence 45667889999998764 466677888888888 78888864 34788999999543222222 246
Q ss_pred EEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy1488 557 IKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALV 592 (630)
Q Consensus 557 f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~ 592 (630)
|.|.+ +.+.|.|.. ....-..|+++|++.....
T Consensus 70 F~I~t--p~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 70 FFIHT--PKRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp EEEEE--TTEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred EEEEC--CCcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 88866 467788855 4455778999999988764
No 115
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=95.56 E-value=0.31 Score=42.56 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=48.4
Q ss_pred eeeEEEEec--CcceeEEEEEEe-CCeEEEEEeccCCC---------ceeEEEeEee--cCcceeeeCCCCCCCCCCccc
Q psy1488 488 QGEVIRVTS--GMWTNTITLFLF-DHQLVYCKRDILKR---------NTHVYKARLN--IDTSQIINLPDGKDPHLGVTV 553 (630)
Q Consensus 488 ~G~l~~~~~--~~~~~~~~~fLF-~d~Ll~~k~~~~~~---------~~~~~k~~i~--L~~~~v~~~~d~~~~~~g~~~ 553 (630)
+|.|.+... +...+.|++.|- +.+|.+-|...... .....++.+. .....+..+.+. ...+...
T Consensus 2 ~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 79 (112)
T PF15413_consen 2 EGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDK--NPFGEIH 79 (112)
T ss_dssp EEEEEE--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES---T--SS-S
T ss_pred CceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccC--CcccCcC
Confidence 577765443 234579999999 99999988611110 1111111111 111111111111 1123333
Q ss_pred ceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHH
Q psy1488 554 RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQE 588 (630)
Q Consensus 554 ~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a 588 (630)
...|.|. ++.+.|.|.|.+.+|+..|+++|.+|
T Consensus 80 ~~~~~i~--T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 80 LKVFSIF--TPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SEEEEEE---SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCcEEE--CCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 4455553 35678999999999999999999875
No 116
>KOG3522|consensus
Probab=94.80 E-value=0.15 Score=57.71 Aligned_cols=120 Identities=11% Similarity=0.055 Sum_probs=64.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCC
Q psy1488 262 SLLSNDQVRSRVVRELINTERDFVKVLHDVSE-GYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDA 340 (630)
Q Consensus 262 ~l~~~~~kR~~ii~ELl~TE~~Yv~~L~~l~~-~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~ 340 (630)
.+..+++-|..+++-+++.+..|++.=..+++ .-.+.+- ..+...-++...|---......+-.+.+.+-...-..
T Consensus 7 ~l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l~~~~~~~eif--~~i~ell~~he~fl~~l~s~~~~w~~qq~vga~~v~~- 83 (925)
T KOG3522|consen 7 QLIDREQSYVESLHTGVDRYVQPLKERKVLIDPRDVDEIF--QNIPELLEIHEDFLEQLCSRDQQWDEQQKVGASFVYS- 83 (925)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHH--HhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-
Confidence 45567888899999999999999887222222 1111111 1122223445555322222222222333332222111
Q ss_pred CCcCcHHHHHHHhcCCc---ccHHHHhhChHHHHHHHHHHHhCCchHHH
Q psy1488 341 PYKSCIGETFLKHKSGF---RMYSEYCNSHPMAIATLQELYQHNNYSKF 386 (630)
Q Consensus 341 ~~~~~ig~vf~~~~~~~---~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~f 386 (630)
-....|+++|.+++..| +.|..|.+ -+...+.++ ++.+++|-.|
T Consensus 84 fSk~~v~~~Y~~y~nn~~~A~~~l~~~~-rpaf~~Fl~-l~~kPr~P~y 130 (925)
T KOG3522|consen 84 FSKTAVLAAYSKYVNNFKRAKCALRNKK-RPAFSKFLE-LMIKPRFPRY 130 (925)
T ss_pred hhHHHHHHHHHHHHhchhHHHHHHHHhc-chHHHHHHH-HHhccCCchH
Confidence 12356999999999988 47888888 555555444 5555554443
No 117
>KOG3632|consensus
Probab=94.16 E-value=0.029 Score=63.88 Aligned_cols=54 Identities=33% Similarity=0.551 Sum_probs=46.4
Q ss_pred EEEEeeccCCCC-------CCCCCCCCCCEEEEEEecC-CCcccccCCCccccccccchhhc
Q psy1488 180 LAEAVWDHVAME-------AEELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVRLR 233 (630)
Q Consensus 180 ~~~aly~~~~~~-------~~eL~f~~gd~i~vl~~~~-~~Ww~g~~~g~~G~~P~~~v~~~ 233 (630)
...|.|||.+++ ..+|.|..||+|+|..+.| +|++.|.++|+.|++|+||++..
T Consensus 1246 ~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~p 1307 (1335)
T KOG3632|consen 1246 QMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEAP 1307 (1335)
T ss_pred hhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCccCccccccccCC
Confidence 456889998765 3679999999999999865 78999999999999999999753
No 118
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.11 E-value=0.65 Score=39.84 Aligned_cols=38 Identities=11% Similarity=0.364 Sum_probs=31.9
Q ss_pred ccceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 552 TVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 552 ~~~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
.+++.|+|...+....+.|.|.+..||++|+.+|.+-|
T Consensus 73 DiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 73 EIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred cCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence 36889999887656778888999999999999997654
No 119
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.82 E-value=0.54 Score=41.63 Aligned_cols=33 Identities=27% Similarity=0.609 Sum_probs=27.9
Q ss_pred ceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHH
Q psy1488 554 RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQE 588 (630)
Q Consensus 554 ~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a 588 (630)
.+.|.|.+ .++.|.|.|.|..++..|+++|+.|
T Consensus 89 ~~~~~i~t--~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 89 RHGLKITN--SNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred ceEEEEEc--CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 56777754 5678999999999999999999864
No 120
>KOG0690|consensus
Probab=93.77 E-value=0.072 Score=54.16 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=54.9
Q ss_pred eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecC--CCeEEEEEeCCHHH
Q psy1488 500 TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSD--KDKWLLFCCRSLED 577 (630)
Q Consensus 500 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~--~~~~~~l~a~s~~e 577 (630)
+.+||++||+|--++.-+..++... ..+.||++..|.+..--. ..-.-++.|.|.|-. .--.=+|.+.|+++
T Consensus 31 WRpRYF~l~~DG~~~Gyr~kP~~~~---~~p~pLNnF~v~~cq~m~---~erPrPntFiiRcLQWTTVIERTF~ves~~e 104 (516)
T KOG0690|consen 31 WRPRYFLLFNDGTLLGYRSKPKEVQ---PTPEPLNNFMVRDCQTMK---TERPRPNTFIIRCLQWTTVIERTFYVESAEE 104 (516)
T ss_pred ccceEEEEeeCCceEeeccCCccCC---CCcccccchhhhhhhhhh---ccCCCCceEEEEeeeeeeeeeeeeecCCHHH
Confidence 4689999999988877654332211 122466666554322111 111336777776521 11123678999999
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q psy1488 578 KARWLAAFQQERALVEQDR 596 (630)
Q Consensus 578 k~~W~~~L~~a~~~~~~~~ 596 (630)
|+.|+.+|+...+...|..
T Consensus 105 Rq~W~~AIq~vsn~l~q~e 123 (516)
T KOG0690|consen 105 RQEWIEAIQAVSNRLKQEE 123 (516)
T ss_pred HHHHHHHHHHHhhhhhhhh
Confidence 9999999988776654444
No 121
>KOG3565|consensus
Probab=93.72 E-value=0.1 Score=58.96 Aligned_cols=57 Identities=12% Similarity=0.427 Sum_probs=50.6
Q ss_pred ceEEEEEeeccCCCCCCCCCCCCCCEEEEEEecC-CCccccc--CCCccccccccchhhc
Q psy1488 177 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT--RGEASGWFPSAFVRLR 233 (630)
Q Consensus 177 ~~~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~-~~Ww~g~--~~g~~G~~P~~~v~~~ 233 (630)
....+.|+|.|.+++++++++.+|+++.+++... +||=+++ .+|..|.||.+|++..
T Consensus 577 ~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~ 636 (640)
T KOG3565|consen 577 PIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT 636 (640)
T ss_pred CccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence 3567899999999999999999999999998865 6898998 7899999999999753
No 122
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=93.57 E-value=0.68 Score=40.88 Aligned_cols=82 Identities=13% Similarity=0.202 Sum_probs=49.8
Q ss_pred eeEEEEEEeCCeEEEEEeccC-CCc-ee---EEE-----eEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEE
Q psy1488 500 TNTITLFLFDHQLVYCKRDIL-KRN-TH---VYK-----ARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLL 569 (630)
Q Consensus 500 ~~~~~~fLF~d~Ll~~k~~~~-~~~-~~---~~k-----~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~ 569 (630)
.+..|++|-...|.+.+.... ... .. ... ..|.|..+......|=. .-+|.|+|...+ ...|+
T Consensus 26 Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~------Kr~~VFrL~~~d-g~e~L 98 (119)
T PF15410_consen 26 WKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYT------KRKNVFRLRTAD-GSEYL 98 (119)
T ss_dssp EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBT------TCSSEEEEE-TT-S-EEE
T ss_pred ccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccc------cCCeEEEEEeCC-CCEEE
Confidence 457899999999998885311 111 11 112 33677766654322211 247899997643 45799
Q ss_pred EEeCCHHHHHHHHHHHHHH
Q psy1488 570 FCCRSLEDKARWLAAFQQE 588 (630)
Q Consensus 570 l~a~s~~ek~~W~~~L~~a 588 (630)
|+|.+.+|.+.|++.|+-+
T Consensus 99 fqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 99 FQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp EE-SSHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHhhh
Confidence 9999999999999999854
No 123
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.83 E-value=2.3 Score=37.14 Aligned_cols=39 Identities=15% Similarity=0.334 Sum_probs=30.0
Q ss_pred ccceeEEEEecC-----CCeEEEEEeCCHHHHHHHHHHHHHHHH
Q psy1488 552 TVRHAIKIHCSD-----KDKWLLFCCRSLEDKARWLAAFQQERA 590 (630)
Q Consensus 552 ~~~~~f~I~~~~-----~~~~~~l~a~s~~ek~~W~~~L~~a~~ 590 (630)
.+++.|+|.... ....+.|.|.|..||.+|+.+|.+...
T Consensus 77 DiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l~~ 120 (122)
T cd01243 77 DIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSELHK 120 (122)
T ss_pred cCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHHHh
Confidence 357889987642 235677789999999999999987653
No 124
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.71 E-value=1.2 Score=38.23 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=27.8
Q ss_pred ceeEEEEec--CCCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 554 RHAIKIHCS--DKDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 554 ~~~f~I~~~--~~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
++.|++... ...+.|.|.|.|++++++||.+++.|-
T Consensus 66 kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rlas 103 (106)
T cd01237 66 KFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLAS 103 (106)
T ss_pred ceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHhh
Confidence 466666532 234689999999999999999998764
No 125
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=91.50 E-value=2.2 Score=47.40 Aligned_cols=101 Identities=12% Similarity=0.231 Sum_probs=57.7
Q ss_pred cEEEeeeEEEEecCcceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecC
Q psy1488 484 QLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSD 563 (630)
Q Consensus 484 ~ll~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~ 563 (630)
.+.+.|.+.+......++.+++.+.++.+.+..........-. .....+. .|.++..... ..-...+++|.|+...
T Consensus 376 Dv~~~G~l~k~~~~~~wk~ry~~l~~~~l~~~~~~~~~~~~~~-~~~~~l~--~~~~v~pv~~-~~~~~~~~~~~i~~~~ 451 (478)
T PTZ00267 376 DVTHGGYLYKYSSDMRWKKRYFYIGNGQLRISLSENPENDGVA-PKSVNLE--TVNDVFPVPE-VYSQKHPNQLVLWFNN 451 (478)
T ss_pred CcccceEEeccCCCcchhhheEEecCCceEEEeccccccCCCC-CccccHH--HhcccccccH-HhcCCCCceEEEEecC
Confidence 4566777766555445678999999999988854322111100 0111111 1111110000 0001236788887754
Q ss_pred CCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 564 KDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 564 ~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
.. .+.|.|.|+++++.|+.+|+.+.
T Consensus 452 ~~-~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 452 GQ-KIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred Cc-EEEEecCChHHHHHHHHHHHHHh
Confidence 43 57778999999999999998764
No 126
>KOG2059|consensus
Probab=91.21 E-value=7.1 Score=43.97 Aligned_cols=99 Identities=12% Similarity=0.195 Sum_probs=70.6
Q ss_pred ccEEEeeeEEEEecCcc------eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCccccee
Q psy1488 483 SQLIHQGEVIRVTSGMW------TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHA 556 (630)
Q Consensus 483 r~ll~~G~l~~~~~~~~------~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~ 556 (630)
--+++.|.+++...++. -+.||+-|-+..|.+.|-.. ..-...|||.++.-++..++ ..+..+|.
T Consensus 563 p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~-----~q~~~~Ipl~nI~avEklee----~sF~~knv 633 (800)
T KOG2059|consen 563 PVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPG-----KQPIYTIPLSNIRAVEKLEE----KSFKMKNV 633 (800)
T ss_pred CceecccceEeccccccchhhhhhhheEEEeccceeEEecCCc-----cCcccceeHHHHHHHHHhhh----hccCCCce
Confidence 34667777776554432 35799999999999998642 12245688988875442222 22356899
Q ss_pred EEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy1488 557 IKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALV 592 (630)
Q Consensus 557 f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~ 592 (630)
|+|.+.+ +...|+|.+..|-+.|+++|.+.....
T Consensus 634 ~qVV~~d--rtly~Q~~n~vEandWldaL~kvs~~N 667 (800)
T KOG2059|consen 634 FQVVHTD--RTLYVQAKNCVEANDWLDALRKVSCCN 667 (800)
T ss_pred EEEEecC--cceeEecCCchHHHHHHHHHHHHhccC
Confidence 9999976 477889999999999999998776543
No 127
>KOG0199|consensus
Probab=90.83 E-value=0.22 Score=55.72 Aligned_cols=51 Identities=29% Similarity=0.543 Sum_probs=40.5
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecC-CCccccc--CCCccccccccchh
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT--RGEASGWFPSAFVR 231 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~-~~Ww~g~--~~g~~G~~P~~~v~ 231 (630)
..++++||+ ..++.|-|++||.|+|++... +.||.|. .+++.|.||.+-|.
T Consensus 377 ~~a~~~~d~--~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 377 AVARETYDS--IEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred ceeeeeccc--cCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 345555555 556789999999999998765 5699997 48899999998876
No 128
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=88.40 E-value=0.23 Score=36.98 Aligned_cols=35 Identities=23% Similarity=0.576 Sum_probs=29.5
Q ss_pred CCCCCEEEEEEecCCC-cccc-cCCCccccccccchh
Q psy1488 197 FRAGDVIEVLDTLDRD-WWWG-TRGEASGWFPSAFVR 231 (630)
Q Consensus 197 f~~gd~i~vl~~~~~~-Ww~g-~~~g~~G~~P~~~v~ 231 (630)
+..|+.|.|+.....+ |++. ..+|..||++..|++
T Consensus 19 l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 19 LPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 6789999999987665 9998 579999999999873
No 129
>KOG3812|consensus
Probab=88.20 E-value=0.32 Score=49.32 Aligned_cols=49 Identities=24% Similarity=0.527 Sum_probs=39.5
Q ss_pred EEEEEeeccCCCCCCC-------CCCCCCCEEEEEEecCCCcccccC---CCccccccc
Q psy1488 179 VLAEAVWDHVAMEAEE-------LGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPS 227 (630)
Q Consensus 179 ~~~~aly~~~~~~~~e-------L~f~~gd~i~vl~~~~~~Ww~g~~---~g~~G~~P~ 227 (630)
+-|++.-+|.+.-+++ ++|+..|.+-|-++.+.+||-|++ .+..|++|+
T Consensus 59 FAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 59 FAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEEEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 3456667777765544 789999999999999999999995 557899996
No 130
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=86.41 E-value=4.8 Score=45.82 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=64.9
Q ss_pred EEEeeeEEEEecCcc----eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEE
Q psy1488 485 LIHQGEVIRVTSGMW----TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIH 560 (630)
Q Consensus 485 ll~~G~l~~~~~~~~----~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~ 560 (630)
..++|.++.+...+. ...||++|=..++-+.|++ ++.+.--++.-+-=.++.|.|..- ....| ..-+.|.|+
T Consensus 4 ~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~-P~~~~~pirs~~id~~~rVed~Gr--~~~~g-~~~yvl~~Y 79 (719)
T PLN00188 4 VVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKK-PQDNQVPIKTLLIDGNCRVEDRGL--KTHHG-HMVYVLSVY 79 (719)
T ss_pred ceEeeEEEEEcccccccccceeEEEEEecchhhhcccC-CccccccceeeccCCCceEeecCc--eEEcC-ceEEEEEEe
Confidence 458888887765432 4578999999999999876 333311122211112333433221 11122 223566676
Q ss_pred ec-CCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy1488 561 CS-DKDKWLLFCCRSLEDKARWLAAFQQERALV 592 (630)
Q Consensus 561 ~~-~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~ 592 (630)
.. +..+.+.|.|.+.+|-.+|+++|..|+++.
T Consensus 80 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 80 NKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred cCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 53 345678999999999999999999999864
No 131
>KOG0040|consensus
Probab=85.92 E-value=0.047 Score=64.69 Aligned_cols=58 Identities=24% Similarity=0.559 Sum_probs=52.5
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhcccc
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ 236 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~~s~ 236 (630)
.++.|+|+|...++.|.+.++||+.+.+....-+||..+++-+.|++|..||+.+...
T Consensus 969 ~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 969 ECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 4677999999999999999999999999988899999999999999999999876433
No 132
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=85.86 E-value=9.5 Score=31.86 Aligned_cols=70 Identities=7% Similarity=0.044 Sum_probs=46.7
Q ss_pred EEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Q psy1488 512 LVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERA 590 (630)
Q Consensus 512 Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~ 590 (630)
+.+.+.+......|......+|..+..++..+... ....|.|..+. .|...|.+..||..++..|.+.-.
T Consensus 20 v~l~k~K~~~~g~f~i~ktW~L~eL~~I~~~~~~~------~~~~F~l~~~k---~y~W~a~s~~Ek~~Fi~~L~k~~~ 89 (91)
T PF15277_consen 20 VRLHKVKQNDNGSFQIGKTWDLDELKAIDGINPDK------DTPEFDLTFDK---PYYWEASSAKEKNTFIRSLWKLYQ 89 (91)
T ss_dssp EEEEEEEE-CCS-EEEEEEEEGGG--EEEE-SSS--------TTEEEEESSS---EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcEEEeeEEehhhceeeeeecCCC------CCcCEEEEECC---CcEEEeCCHHHHHHHHHHHHHHhc
Confidence 34455554555669999999999998776554321 13467776633 788899999999999999976543
No 133
>KOG1924|consensus
Probab=85.34 E-value=75 Score=36.66 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=20.8
Q ss_pred cc-cHHHHhhChHHHHH----HHHHHHhCCchHHHHHHHH
Q psy1488 357 FR-MYSEYCNSHPMAIA----TLQELYQHNNYSKFFEACR 391 (630)
Q Consensus 357 ~~-~Y~~Y~~~~~~a~~----~l~~~~~~~~f~~fl~~~~ 391 (630)
|+ .|.+-++|..-++. ..+++++...|..+++-+-
T Consensus 786 FKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvL 825 (1102)
T KOG1924|consen 786 FKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVL 825 (1102)
T ss_pred HHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44 67777777633322 2334455567888888654
No 134
>KOG4384|consensus
Probab=85.10 E-value=4.9 Score=41.53 Aligned_cols=61 Identities=20% Similarity=0.385 Sum_probs=49.0
Q ss_pred EEEeeccC--CCCCCCCCCCCCCEEEEEEecCCCcccccCCCccccccccchhhccccccchh
Q psy1488 181 AEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVE 241 (630)
Q Consensus 181 ~~aly~~~--~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v~~~~s~e~~~e 241 (630)
+++.-+|. ....++|-+++||+|.++....-+-|.|-++++.|-|+.-||..+...+....
T Consensus 139 ~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s~e~~~~~ 201 (361)
T KOG4384|consen 139 ARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVISEEEPAPK 201 (361)
T ss_pred ccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceeccccccccccc
Confidence 44444444 45788999999999999999999999999999999999999987755544433
No 135
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.04 E-value=20 Score=31.23 Aligned_cols=95 Identities=14% Similarity=0.240 Sum_probs=49.6
Q ss_pred EeeeEEEEecCcceeEEEEEEeCC-eEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecCCC
Q psy1488 487 HQGEVIRVTSGMWTNTITLFLFDH-QLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKD 565 (630)
Q Consensus 487 ~~G~l~~~~~~~~~~~~~~fLF~d-~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~~~ 565 (630)
++|.++-.........||.+..+. .|-+-+-. ..-.|-..|||..+.-+....+. ........|+|+|.+. +
T Consensus 2 kEGWmVHyT~~d~~rKRhYWrLDsK~Itlf~~e----~~skyyKeIPLsEIl~V~~~~~~-~~~~~~~~hcFEi~T~--~ 74 (117)
T cd01239 2 KEGWMVHYTSSDNRRKKHYWRLDSKAITLYQEE----SGSRYYKEIPLAEILSVSSNNGD-SVLAKHPPHCFEIRTT--T 74 (117)
T ss_pred ccceEEEEecCccceeeeEEEecCCeEEEEEcC----CCCeeeEEeehHHheEEeccCCC-cCCCCCCCcEEEEEec--C
Confidence 345544333222223455555554 44444432 23345567899987755433332 2233456899999873 2
Q ss_pred eEEEEEe--------------------CCHHHHHHHHHHHHHH
Q psy1488 566 KWLLFCC--------------------RSLEDKARWLAAFQQE 588 (630)
Q Consensus 566 ~~~~l~a--------------------~s~~ek~~W~~~L~~a 588 (630)
.+|-+.. ...+.-+-|..+|++|
T Consensus 75 ~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 75 NVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 2333311 2345567788887754
No 136
>KOG3705|consensus
Probab=82.99 E-value=1.4 Score=46.00 Aligned_cols=53 Identities=25% Similarity=0.287 Sum_probs=42.7
Q ss_pred EEEEeeccCCCCCCCCCCCCCCEEEEEEecCCCcccccC--CCccccccccchhh
Q psy1488 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRL 232 (630)
Q Consensus 180 ~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~~Ww~g~~--~g~~G~~P~~~v~~ 232 (630)
.+.++|++.++..+|+.++.||+|-|-..--+|.-+|+. .++.|+||+-=|++
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 367899999999999999999999887655455556664 56999999976654
No 137
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=82.24 E-value=1 Score=34.42 Aligned_cols=34 Identities=32% Similarity=0.558 Sum_probs=28.4
Q ss_pred CCCCCEEEEEEecCCCcccccCC-Cccccccccch
Q psy1488 197 FRAGDVIEVLDTLDRDWWWGTRG-EASGWFPSAFV 230 (630)
Q Consensus 197 f~~gd~i~vl~~~~~~Ww~g~~~-g~~G~~P~~~v 230 (630)
+..|+.+.|+...+++|.+-+.. |..||++..++
T Consensus 27 l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 27 LKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred ecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 67899999998765589998864 99999987665
No 138
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=82.12 E-value=27 Score=30.93 Aligned_cols=87 Identities=15% Similarity=0.199 Sum_probs=49.0
Q ss_pred ceeEEEEEEeCC--eEEEEEeccC-CCceeEEEeEeecCcceeeeCCCCCCCCCCc---ccceeEEEEecCCCeEEEEEe
Q psy1488 499 WTNTITLFLFDH--QLVYCKRDIL-KRNTHVYKARLNIDTSQIINLPDGKDPHLGV---TVRHAIKIHCSDKDKWLLFCC 572 (630)
Q Consensus 499 ~~~~~~~fLF~d--~Ll~~k~~~~-~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~---~~~~~f~I~~~~~~~~~~l~a 572 (630)
..+.|+++|=.+ .|.....+.. ....-.....+.+..+. .+.++.....+. ...++|.| ...++.+.|.|
T Consensus 29 ~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~--~V~~~~~~~~~~~~~~~~~si~i--~t~~R~L~l~a 104 (123)
T PF12814_consen 29 KPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVT--EVKDGNPSPPGLKKPDHNKSIII--VTPDRSLDLTA 104 (123)
T ss_pred CcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeE--EecCCCCCCccccccccceEEEE--EcCCeEEEEEe
Confidence 356788777554 4444443211 11111223335555543 444443333332 12344444 35677999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy1488 573 RSLEDKARWLAAFQQER 589 (630)
Q Consensus 573 ~s~~ek~~W~~~L~~a~ 589 (630)
.+.++.+.|+++|.-.+
T Consensus 105 ~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 105 PSRERHEIWFNALRYLL 121 (123)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999997654
No 139
>KOG3640|consensus
Probab=81.46 E-value=3.3 Score=47.90 Aligned_cols=90 Identities=10% Similarity=0.136 Sum_probs=59.4
Q ss_pred eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecC------------CCeE
Q psy1488 500 TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSD------------KDKW 567 (630)
Q Consensus 500 ~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~------------~~~~ 567 (630)
+..|+|+|=..+|.|.|-.. .....++-+.|.|..|+=..+..... --....|.|.|.+.. +.--
T Consensus 1008 WhRyWc~L~gg~I~fWk~Pd-DEkrK~Pig~IDLt~CTsq~ie~a~r--dicar~ntFhie~~rPl~~Dqep~~ie~r~R 1084 (1116)
T KOG3640|consen 1008 WHRYWCALHGGEIKFWKYPD-DEKRKVPIGQIDLTKCTSQSIEEARR--DICARPNTFHIEVWRPLEDDQEPLLIEKRLR 1084 (1116)
T ss_pred hhhhhHHhcCCeeeeecCcc-hhcccCcceeeehhhhhccccccchh--hhccCCceeEEEeecccccccCcchhhhcce
Confidence 34677888888888887532 22355667788999887544443321 111346778876321 1114
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHHH
Q psy1488 568 LLFCCRSLEDKARWLAAFQQERALV 592 (630)
Q Consensus 568 ~~l~a~s~~ek~~W~~~L~~a~~~~ 592 (630)
.+|.|.+.++++.|++.|+++....
T Consensus 1085 v~LaADTkeel~~Wls~iN~tL~~L 1109 (1116)
T KOG3640|consen 1085 VMLAADTKEELQSWLSAINDTLKQL 1109 (1116)
T ss_pred eeeecccHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999987654
No 140
>KOG1451|consensus
Probab=80.41 E-value=70 Score=35.61 Aligned_cols=36 Identities=14% Similarity=0.342 Sum_probs=32.3
Q ss_pred ceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 554 RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 554 ~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
.+||-|....+..+++++|-|++++..||+++..+.
T Consensus 332 RFCFDve~~erpgviTmQALSE~drrlWmeAMDG~e 367 (812)
T KOG1451|consen 332 RFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGAE 367 (812)
T ss_pred ceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCCC
Confidence 689999888888899999999999999999997653
No 141
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=80.02 E-value=1 Score=36.73 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCEEEEEEecCCCccccc-CCCccccccccchh
Q psy1488 191 EAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVR 231 (630)
Q Consensus 191 ~~~eL~f~~gd~i~vl~~~~~~Ww~g~-~~g~~G~~P~~~v~ 231 (630)
+.-+|.+++|+.+.|++..+.+-|-++ ..|+.|++|.+++-
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~ 70 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLL 70 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS-
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHcc
Confidence 357899999999999999998888888 58999999998873
No 142
>PF15406 PH_6: Pleckstrin homology domain
Probab=79.40 E-value=3.7 Score=35.08 Aligned_cols=30 Identities=13% Similarity=0.324 Sum_probs=22.0
Q ss_pred eeEEEEecCCCeEEEEEeCCHHHHHHHHHHHH
Q psy1488 555 HAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQ 586 (630)
Q Consensus 555 ~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~ 586 (630)
+.|.+...+ ...+|.|.+..||+.|+..|.
T Consensus 81 ~kF~f~~~G--~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 81 NKFHFKIKG--HKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred ceEEEEeCC--ceeeeecCCHHHhccHHHHhh
Confidence 344444433 346899999999999999885
No 143
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=79.32 E-value=25 Score=30.59 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=29.9
Q ss_pred ccceeEEEEecCC--CeEEEEEeCCHHHHHHHHHHHHH
Q psy1488 552 TVRHAIKIHCSDK--DKWLLFCCRSLEDKARWLAAFQQ 587 (630)
Q Consensus 552 ~~~~~f~I~~~~~--~~~~~l~a~s~~ek~~W~~~L~~ 587 (630)
....+|.|..... .+.+.|.|.|.++.+.|++.|..
T Consensus 77 ~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 77 LEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 3457899888665 57899999999999999999863
No 144
>PRK10884 SH3 domain-containing protein; Provisional
Probab=77.83 E-value=1.4 Score=42.71 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEEecC-CCccccc-CCCccccccccchhhc
Q psy1488 196 GFRAGDVIEVLDTLD-RDWWWGT-RGEASGWFPSAFVRLR 233 (630)
Q Consensus 196 ~f~~gd~i~vl~~~~-~~Ww~g~-~~g~~G~~P~~~v~~~ 233 (630)
++..|+.++|++..+ .+|.+.+ .+|+.||++..|+...
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence 478999999998776 6799887 5899999999999643
No 145
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=77.55 E-value=6.4 Score=33.68 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=58.0
Q ss_pred EEEeeeEEEEecC--cceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEec
Q psy1488 485 LIHQGEVIRVTSG--MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCS 562 (630)
Q Consensus 485 ll~~G~l~~~~~~--~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~ 562 (630)
.|.+|.+.++... ..++.+|+.||.+-|=+-.....++... |.++.+. ++..+. --....+|+.|...
T Consensus 3 cIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~~eL-----i~M~~i~--~V~~e~---~~iK~~~CI~ik~k 72 (116)
T cd01240 3 CIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANKPEL-----ITMDQIE--DVSVEF---QQIKEENCILLKIR 72 (116)
T ss_pred eEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccCCcE-----EEeehhh--hcchhh---eeeccCceEEEEEc
Confidence 4667776654421 1246899999999987722111112222 2222221 111000 00012467777775
Q ss_pred CCCeEEEEEeCCHHHHHHHHHHHHHHHHHHhh
Q psy1488 563 DKDKWLLFCCRSLEDKARWLAAFQQERALVEQ 594 (630)
Q Consensus 563 ~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~~~ 594 (630)
+ +.-+++.+.+.-+-.+|...|..+-+..++
T Consensus 73 ~-~~k~vlt~~d~i~l~qW~~elr~a~r~Sq~ 103 (116)
T cd01240 73 D-EKKIVLTNSDEIELKQWKKELRDAHRESQQ 103 (116)
T ss_pred C-CceEEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 5 456889999999999999999998876643
No 146
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=77.03 E-value=41 Score=29.06 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=30.1
Q ss_pred ceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHh
Q psy1488 554 RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVE 593 (630)
Q Consensus 554 ~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~~ 593 (630)
.+.|-|.+. ...+.|.|.|..+++.|.+.|+.......
T Consensus 70 ~~yfgL~T~--~G~vEfec~~~~~~k~W~~gI~~mL~~~~ 107 (110)
T PF08458_consen 70 RRYFGLKTA--QGVVEFECDSQREYKRWVQGIQHMLSQVA 107 (110)
T ss_pred EEEEEEEec--CcEEEEEeCChhhHHHHHHHHHHHHHHhh
Confidence 345666543 56899999999999999999998876654
No 147
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.93 E-value=12 Score=32.36 Aligned_cols=100 Identities=12% Similarity=0.159 Sum_probs=51.6
Q ss_pred eeeEEEEecCc-ceeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEecC---
Q psy1488 488 QGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSD--- 563 (630)
Q Consensus 488 ~G~l~~~~~~~-~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~~--- 563 (630)
+|.|.....|+ ..+.++++|=.+-|-++.+...+.. -.+.-...++...|.-...++ ...+-...++|.|-...
T Consensus 3 ~g~LylK~~gkKsWKk~~f~LR~SGLYy~~Kgksk~s-rdL~cl~~f~~~nvY~~~~~k-Kk~kAPTd~~F~~K~~~~q~ 80 (114)
T cd01259 3 EGPLYLKADGKKSWKKYYFVLRSSGLYYFPKEKTKNT-RDLACLNLLHGHNVYTGLGWR-KKYKSPTDYCFGFKAVGDQS 80 (114)
T ss_pred cceEEEccCCCccceEEEEEEeCCeeEEccCCCcCCH-HHHHHHHhcccCcEEEEechh-hccCCCCCceEEEeccccCc
Confidence 46665444343 3567778887777766654322221 111111122233332222111 11222334566654321
Q ss_pred --CCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 564 --KDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 564 --~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
....-.|||++++.+..|+.+|+-+.
T Consensus 81 ~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 81 KGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred ccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 23456789999999999999998554
No 148
>PF15404 PH_4: Pleckstrin homology domain
Probab=67.39 E-value=5.2 Score=38.08 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=20.9
Q ss_pred CeEEEEEeCCHHHHHHHHHHHHHH
Q psy1488 565 DKWLLFCCRSLEDKARWLAAFQQE 588 (630)
Q Consensus 565 ~~~~~l~a~s~~ek~~W~~~L~~a 588 (630)
.+.++|.|+|..||+.|+.+|...
T Consensus 161 gks~VF~ARSRqERD~WV~~I~~E 184 (185)
T PF15404_consen 161 GKSMVFMARSRQERDLWVLAINTE 184 (185)
T ss_pred CcEEEEEeccHHHHHHHHHHHHhc
Confidence 356899999999999999999754
No 149
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=67.15 E-value=4.1 Score=30.27 Aligned_cols=34 Identities=15% Similarity=0.404 Sum_probs=27.8
Q ss_pred CCCCCCEEEEEEecCCCcccccCCCccccccccch
Q psy1488 196 GFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230 (630)
Q Consensus 196 ~f~~gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~~v 230 (630)
.+.+|..+.|. ...++|.+-+.+|..||++...+
T Consensus 20 ~l~~g~~v~v~-~~~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 20 RLEPGVPVRVI-ECRGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EECCCCEEEEE-EccCCeEEEEECCeEEeEEeeec
Confidence 46788888888 45688999889999999987654
No 150
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=65.94 E-value=3.9 Score=31.11 Aligned_cols=24 Identities=29% Similarity=0.736 Sum_probs=21.0
Q ss_pred CCCCCCEEEEEEecCCCcccccCC
Q psy1488 196 GFRAGDVIEVLDTLDRDWWWGTRG 219 (630)
Q Consensus 196 ~f~~gd~i~vl~~~~~~Ww~g~~~ 219 (630)
.|++||.|.+....++.||.|.+-
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEE
Confidence 589999999998888999999853
No 151
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=65.90 E-value=57 Score=27.08 Aligned_cols=84 Identities=17% Similarity=0.314 Sum_probs=47.8
Q ss_pred EeeeEEEEecCcceeEEEEEEeCCe-EEEEEeccCCCceeEEEeEeecCcceee-eCCCCCCCCCCcccceeEEEEecCC
Q psy1488 487 HQGEVIRVTSGMWTNTITLFLFDHQ-LVYCKRDILKRNTHVYKARLNIDTSQII-NLPDGKDPHLGVTVRHAIKIHCSDK 564 (630)
Q Consensus 487 ~~G~l~~~~~~~~~~~~~~fLF~d~-Ll~~k~~~~~~~~~~~k~~i~L~~~~v~-~~~d~~~~~~g~~~~~~f~I~~~~~ 564 (630)
+.|.+.+ ..|...+.|.++|-+-- |++..+ ...+.|+.||++.+.+. .... ...|.|.. +
T Consensus 3 ~~g~v~K-r~glf~kkR~LiLTd~PrL~yvdp-----~~~~~KgeIp~s~~~l~v~~~~----------~~~F~I~T--p 64 (89)
T cd01262 3 KIGAVKK-RKGLFAKKRQLILTNGPRLIYVDP-----VKKVVKGEIPWSDVELRVEVKN----------SSHFFVHT--P 64 (89)
T ss_pred eeeeeee-hhccccceeeEEEecCceEEEEcC-----CcCeEEeEecccccceEEEEec----------CccEEEEC--C
Confidence 4455443 22333445655554432 555544 25678899999883332 1111 25677744 4
Q ss_pred CeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 565 DKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 565 ~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
.+.|.| ......-..|+++|.++.
T Consensus 65 ~rty~l-eD~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 65 NKVYSF-EDPKGRASQWKKAIEDLQ 88 (89)
T ss_pred CceEEE-ECCCCCHHHHHHHHHHHh
Confidence 556666 344566778999998764
No 152
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=61.31 E-value=17 Score=31.39 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=29.3
Q ss_pred ccceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy1488 552 TVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQ 587 (630)
Q Consensus 552 ~~~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~ 587 (630)
...++|.|.+...-...+|..++..|...|..+|..
T Consensus 72 ~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 72 QRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 346889988765436788999999999999999864
No 153
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=56.41 E-value=7.1 Score=42.67 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=32.0
Q ss_pred CCCCCCEEEEEEecCCCcccccC-CCccccccccchhh
Q psy1488 196 GFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFVRL 232 (630)
Q Consensus 196 ~f~~gd~i~vl~~~~~~Ww~g~~-~g~~G~~P~~~v~~ 232 (630)
++.+|+.|.|+...+.||++-+. +|+.||+-..|+..
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~ 141 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD 141 (481)
T ss_pred eecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence 47899999998766789999997 59999999999864
No 154
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=54.18 E-value=23 Score=29.97 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=26.5
Q ss_pred ceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHH
Q psy1488 554 RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQ 587 (630)
Q Consensus 554 ~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~ 587 (630)
.+.|.|...+. ..|+|.+.+.++.+.|+..|+.
T Consensus 74 ~nTFvLK~~~~-~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 74 LYTFVLKVDDN-TDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred ccEEEEEecCC-ceEEEEcCCHHHHHHHHHHHhc
Confidence 46677766443 4699999999999999999975
No 155
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=53.90 E-value=3.5e+02 Score=30.01 Aligned_cols=109 Identities=14% Similarity=0.230 Sum_probs=69.8
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhhhccCCCCc
Q psy1488 268 QVRSRVVREL----INTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYK 343 (630)
Q Consensus 268 ~kR~~ii~EL----l~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~~~~~~~~~ 343 (630)
.+|...|.+| ...|..=.+.|+.++..|...|.. ...+.+.++..++. .++..+++.+|..=..
T Consensus 82 ~~r~~~I~~l~~~L~~~E~~R~~~l~~~l~~~~~~L~~-ia~~~~~dv~rli~--~ea~~iN~~ll~Nrra--------- 149 (473)
T PF14643_consen 82 QKRKQWIKELDEDLEELEKERADKLKKVLRKYVEILEK-IAHLLPPDVERLIE--KEAMEINQALLGNRRA--------- 149 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCcHHHHHHHH--HHHHHHHHHHHHhHHH---------
Confidence 4566666665 455888888999999999998876 34555666666665 6677788777764332
Q ss_pred CcHHHHHHHhcC-CcccHHHHhhChHHHHHHHHHHHhCCchHHHHHHH
Q psy1488 344 SCIGETFLKHKS-GFRMYSEYCNSHPMAIATLQELYQHNNYSKFFEAC 390 (630)
Q Consensus 344 ~~ig~vf~~~~~-~~~~Y~~Y~~~~~~a~~~l~~~~~~~~f~~fl~~~ 390 (630)
++++|.+... .++.-..|...+......++.++.+.-+..|...+
T Consensus 150 --~a~L~~~L~~~~~~~e~~~~~~w~~~~~~Wr~l~~~~~i~~f~~~~ 195 (473)
T PF14643_consen 150 --YADLFANLMEAELQRELSYRRRWQDRVDDWRALRHERAIQEFREFM 195 (473)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4555555543 34455566666666666676665554444444443
No 156
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=53.84 E-value=9.4 Score=30.39 Aligned_cols=24 Identities=42% Similarity=0.945 Sum_probs=19.1
Q ss_pred CCCCCCCEEEEEEec------CCCcccccC
Q psy1488 195 LGFRAGDVIEVLDTL------DRDWWWGTR 218 (630)
Q Consensus 195 L~f~~gd~i~vl~~~------~~~Ww~g~~ 218 (630)
|+++.||.|.|-... +.+||-|..
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 788999999886554 468999983
No 157
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=53.78 E-value=50 Score=26.85 Aligned_cols=62 Identities=13% Similarity=0.262 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCC-HHHHHHHhcCHHHHHHHHHHHHHH
Q psy1488 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS-PEQIQTIFGNLEDILAFQSSFLED 331 (630)
Q Consensus 270 R~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~-~~~~~~iF~ni~~I~~~h~~ll~~ 331 (630)
-...++|-...|..|.+.|..|...|..........-+ ..-+..|-...+.+-..|..|-..
T Consensus 28 l~~~~keRa~lE~~Yak~L~kl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~a~~h~~~a~~ 90 (91)
T PF00611_consen 28 LASFFKERASLEEEYAKSLQKLAKKFKKKMKSSQEYGTLKNAWDSLLEETEQIAEQHSKLAEN 90 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35678888899999999999999998877653221100 223344444555566666665544
No 158
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=48.16 E-value=13 Score=36.01 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=32.8
Q ss_pred CCCCCCEEEEEEecCC-CcccccC-CCccccccccchhhccc
Q psy1488 196 GFRAGDVIEVLDTLDR-DWWWGTR-GEASGWFPSAFVRLRVS 235 (630)
Q Consensus 196 ~f~~gd~i~vl~~~~~-~Ww~g~~-~g~~G~~P~~~v~~~~s 235 (630)
++++|+.++|+..... +|...+. .|+.|||+..++..-.+
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e~s 90 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSEPS 90 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccccc
Confidence 4889999999998765 7998884 88999999988865433
No 159
>KOG3723|consensus
Probab=41.98 E-value=13 Score=40.88 Aligned_cols=104 Identities=16% Similarity=0.297 Sum_probs=63.5
Q ss_pred cCCccEEEeeeEEEEecCcc-----eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeee-CCCCCCCCCCccc
Q psy1488 480 ETSSQLIHQGEVIRVTSGMW-----TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIIN-LPDGKDPHLGVTV 553 (630)
Q Consensus 480 ~~~r~ll~~G~l~~~~~~~~-----~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~-~~d~~~~~~g~~~ 553 (630)
..++.-+.+|.|.. ++|+| ++.+|+-|=.-.|.+-|.++.....- ..|+|..+.-+. +.. + .-.-++
T Consensus 730 n~~gqp~iEGQLKE-KKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~~---~~IDl~~IRSVk~v~~-k--r~~rsl 802 (851)
T KOG3723|consen 730 NQDGQPLIEGQLKE-KKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSDD---CPIDLSKIRSVKAVAK-K--RRDRSL 802 (851)
T ss_pred cCCCCchhcchhhh-hccchhhhhhhccceEEecchhhhcccCCCCCCCCC---CCccHHHhhhHHHHHh-h--hhhccc
Confidence 34455577888754 44554 45777777666777666543222111 345555543222 111 0 012356
Q ss_pred ceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy1488 554 RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALV 592 (630)
Q Consensus 554 ~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~ 592 (630)
+.+|+|...+ ..|+|.+.++..-.+|++.|+-+.+-.
T Consensus 803 pKAFEIFTAD--~T~ILKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 803 PKAFEIFTAD--KTYILKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred chhhheeecC--ceEEeecccccCHHHHHHHHHHHHHHH
Confidence 8899998754 459999999999999999998665443
No 160
>PF15408 PH_7: Pleckstrin homology domain
Probab=39.64 E-value=30 Score=28.21 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=22.6
Q ss_pred eeEEEEecC-CCeEEEEEeCCHHHHHHHHHHHHHH
Q psy1488 555 HAIKIHCSD-KDKWLLFCCRSLEDKARWLAAFQQE 588 (630)
Q Consensus 555 ~~f~I~~~~-~~~~~~l~a~s~~ek~~W~~~L~~a 588 (630)
++|-|...+ ..+.+.+.|+|.+..+.|++.++.-
T Consensus 62 ~A~G~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~~ 96 (104)
T PF15408_consen 62 NAFGFLMYSPSRRHVQCFASSKKVCQSWIQVMNSP 96 (104)
T ss_pred eEEEEEEecCCcchhhhhhhHHHHHHHHHHHhcCh
Confidence 344443322 2344566699999999999999753
No 161
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=37.90 E-value=45 Score=28.44 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 564 KDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 564 ~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
...++.|.+..+.||..|+++|-+|-
T Consensus 85 egd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 85 EGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred cCcEEEEeccchHHHHHHHHHHHHHc
Confidence 34578999999999999999998774
No 162
>KOG0705|consensus
Probab=34.22 E-value=31 Score=38.18 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=28.2
Q ss_pred eeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy1488 555 HAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERAL 591 (630)
Q Consensus 555 ~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~ 591 (630)
.+|.|...... ...|.|.+-+||+.|+++|...|..
T Consensus 446 e~F~IVs~tgq-tWhFeAtt~EERdaWvQai~sqIla 481 (749)
T KOG0705|consen 446 ECFEIVSNTGQ-TWHFEATTYEERDAWVQAIQSQILA 481 (749)
T ss_pred ceEEEeccccc-hhhhhhcchhhHHHHHHHHHHHHHH
Confidence 47888765433 3468899999999999999988754
No 163
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=33.17 E-value=1.4e+02 Score=25.05 Aligned_cols=50 Identities=14% Similarity=0.369 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhhHHHHhh----cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q psy1488 283 DFVKVLHDVSEGYLAECRR----RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETK 335 (630)
Q Consensus 283 ~Yv~~L~~l~~~y~~~l~~----~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~ 335 (630)
.||+.|+.-++.|...++. ..++.+...+..||- .|-..|-.+|..+.+.
T Consensus 2 ef~~~l~~~v~if~nRmksns~RGrsIanDsaVqsLF~---~lt~mH~~LL~~i~~~ 55 (96)
T PF12210_consen 2 EFCNTLRSSVEIFVNRMKSNSSRGRSIANDSAVQSLFQ---TLTAMHPQLLKYIQEQ 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--GGG-HHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcCCCCcccHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 5888999989999888865 234555677888885 4566677777766654
No 164
>KOG3751|consensus
Probab=32.92 E-value=1.2e+02 Score=33.37 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=50.2
Q ss_pred EEEeeeEEEEecCcc-eeEEEEEEeCCeEEEEEeccCCCceeEEEeEeecCcceeeeCCCC-CCCCCCcccceeEEEEec
Q psy1488 485 LIHQGEVIRVTSGMW-TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG-KDPHLGVTVRHAIKIHCS 562 (630)
Q Consensus 485 ll~~G~l~~~~~~~~-~~~~~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~L~~~~v~~~~d~-~~~~~g~~~~~~f~I~~~ 562 (630)
.-.+|.|+....|++ ++..||||=..-|-|..+...+... -+.-...+..-.|.-...+ +.....-...++|+....
T Consensus 317 pei~GfL~~K~dgkKsWKk~yf~LR~SGLYys~K~tsk~~r-~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K~~~~ 395 (622)
T KOG3751|consen 317 PEIQGFLYLKEDGKKSWKKHYFVLRRSGLYYSTKGTSKEPR-HLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIKPNKL 395 (622)
T ss_pred ccccceeeecccccccceeEEEEEecCcceEccCCCCCCch-hhHHHHhcccCceEEeecchhccCCCCCceEEeeeccc
Confidence 345677765555543 5577788877777666543222211 0000011111112111111 111111112333443221
Q ss_pred --CCCeEEEEEeCCHHHHHHHHHHHHHHH
Q psy1488 563 --DKDKWLLFCCRSLEDKARWLAAFQQER 589 (630)
Q Consensus 563 --~~~~~~~l~a~s~~ek~~W~~~L~~a~ 589 (630)
.....=.|||+++..++.|+.+|+-+.
T Consensus 396 ~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 396 RNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred cCcccceeeeecccchhHHHHHHHHHHHH
Confidence 112334679999999999999998665
No 165
>KOG3580|consensus
Probab=27.96 E-value=72 Score=35.54 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=38.7
Q ss_pred EEEEEeeccCCCCCCCCCCCCCCEEEEEEecCC----CcccccC-----CCcccccccc
Q psy1488 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR----DWWWGTR-----GEASGWFPSA 228 (630)
Q Consensus 179 ~~~~aly~~~~~~~~eL~f~~gd~i~vl~~~~~----~Ww~g~~-----~g~~G~~P~~ 228 (630)
++.+..|.|+...+..|+|.+||++.|++..-+ .|.-.++ .-..|++|..
T Consensus 505 FyIRtHFE~Eke~P~gL~FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNk 563 (1027)
T KOG3580|consen 505 FYIRTHFECEKETPQGLAFTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNK 563 (1027)
T ss_pred eEEeeeeeecCCCCccccccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCc
Confidence 567889999999999999999999999887432 3555443 2367999963
No 166
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=27.82 E-value=5.5e+02 Score=24.59 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=61.9
Q ss_pred cEEEeeeEEEEecCcceeEEEEEEeCCeEEEEEecc-CCCceeEEEeEeecCcceeeeCCCCCCCCCCcccceeEEEEec
Q psy1488 484 QLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDI-LKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCS 562 (630)
Q Consensus 484 ~ll~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~-~~~~~~~~k~~i~L~~~~v~~~~d~~~~~~g~~~~~~f~I~~~ 562 (630)
..+....+.++..+.+..+|.++|=+..|.+..... .....|..+..|||..+.=+.+....| ..|.|...
T Consensus 49 ~vlFs~~v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~~D--------~~~vihv~ 120 (199)
T PF06017_consen 49 KVLFSDRVQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPLSD--------NFFVIHVP 120 (199)
T ss_pred ceEEEEEEEEecCCCCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccCCC--------CEEEEEEC
Confidence 678888888888877778899999888877775321 234678899999998876332222111 23444443
Q ss_pred CCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy1488 563 DKDKWLLFCCRSLEDKARWLAAFQQERALV 592 (630)
Q Consensus 563 ~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~ 592 (630)
... -++|.|... .+.+..|..+....
T Consensus 121 ~~~-D~il~~~~k---~Elv~~L~~~~~~~ 146 (199)
T PF06017_consen 121 GEG-DLILESDFK---TELVTILCKAYKKA 146 (199)
T ss_pred CCC-CEEEEeCcH---HHHHHHHHHHHHHH
Confidence 333 356666544 66666776666543
No 167
>KOG3551|consensus
Probab=27.37 E-value=95 Score=32.80 Aligned_cols=38 Identities=16% Similarity=0.383 Sum_probs=33.1
Q ss_pred ceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy1488 554 RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERAL 591 (630)
Q Consensus 554 ~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~ 591 (630)
...|+|.+.+...++++.|.+..+-+.|.++|+.+...
T Consensus 236 nR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ 273 (506)
T KOG3551|consen 236 NRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNT 273 (506)
T ss_pred cceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhh
Confidence 57899988777788999999999999999999887654
No 168
>PLN02866 phospholipase D
Probab=26.31 E-value=3.7e+02 Score=32.68 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=30.7
Q ss_pred cceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy1488 553 VRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERAL 591 (630)
Q Consensus 553 ~~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~ 591 (630)
..+.|+|.+. ++.+.|.|.|...-..|+.+|..+...
T Consensus 273 ~~~~~~i~~~--~r~l~l~~~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 273 LRFGFKVTCG--NRSIRLRTKSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred CcceEEEecC--ceEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 4678888664 456899999999999999999998754
No 169
>KOG0932|consensus
Probab=26.16 E-value=1.2e+02 Score=33.67 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=30.3
Q ss_pred ceeEEEEecCCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy1488 554 RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALV 592 (630)
Q Consensus 554 ~~~f~I~~~~~~~~~~l~a~s~~ek~~W~~~L~~a~~~~ 592 (630)
+|.|++... .-+.|+|++.+.+|.+.|+..|+-....+
T Consensus 583 p~Vf~lrtA-dwrv~LFQaps~eEmqsWi~rIN~vAA~f 620 (774)
T KOG0932|consen 583 PHVFKLRTA-DWRVFLFQAPSQEEMQSWIERINLVAAAF 620 (774)
T ss_pred CceEEEEec-cceeEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 577887653 34689999999999999999998766554
No 170
>KOG2057|consensus
Probab=24.57 E-value=4.6e+02 Score=27.11 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=11.4
Q ss_pred CcceeEEEEEEeCCeEE
Q psy1488 497 GMWTNTITLFLFDHQLV 513 (630)
Q Consensus 497 ~~~~~~~~~fLF~d~Ll 513 (630)
..|-++-..|.|+|.|=
T Consensus 189 eeWDKe~Saf~fSdklg 205 (499)
T KOG2057|consen 189 EEWDKEDSAFFFSDKLG 205 (499)
T ss_pred ccccccccccchhhhhh
Confidence 34555667888888763
No 171
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=20.26 E-value=3.5e+02 Score=26.85 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Q psy1488 271 SRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETK 335 (630)
Q Consensus 271 ~~ii~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~ll~~L~~~ 335 (630)
...++|=-.-|..|.+.|..|...|.+.+.. ..--...-+..|...++.|-.+|..|-..|..-
T Consensus 25 ~~f~kERa~IE~~YAK~L~kLa~k~~k~~~~-~~Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~e 88 (239)
T cd07658 25 ATVLQERAELELNYAKGLSKLSGKLSKASKS-VSGTLSSAWTCVAEEMESEADIHRNLGSALTEE 88 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777778999999999999888665532 221124556778888999999999888877643
Done!