RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1488
(630 letters)
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 453 bits (1166), Expect = e-155
Identities = 213/462 (46%), Positives = 314/462 (67%), Gaps = 8/462 (1%)
Query: 160 NELSPLLRRKPIGMDEDF----VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 215
+ P + + ++E VV AEA+WDHV M+ +ELGF+AGDVIEV+D +R+WWW
Sbjct: 8 HYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWW 67
Query: 216 GTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVR 275
G + GWFP++FVRLRV+Q++ +D + G++ + S DQ+R+ V+
Sbjct: 68 GRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAEDGGAE---AQSSKDQMRTNVIN 124
Query: 276 ELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETK 335
E+++TERD++K L D+ EGY+ +CR+R DMFS EQ++TIFGN+EDI Q +F++ LE +
Sbjct: 125 EILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQR 184
Query: 336 LDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKFFEACRLMRG 395
+ + P+ S +G FL+H++ F++YSEYCN+HP A L L + + Y FFEACRL++
Sbjct: 185 FNRERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQK 244
Query: 396 LIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKR 455
+I+I LDG+LLTPVQ+ICKYPLQLAELLKYT H D+ + AL AM++VA LINERKR
Sbjct: 245 MIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINERKR 304
Query: 456 RMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNT-ITLFLFDHQLVY 514
R+E+++K+A WQ +E WEGEDL+ SS+LI+ GE+ RVT + FLFDHQL+Y
Sbjct: 305 RLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIY 364
Query: 515 CKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRS 574
CK+D+L+R+ YK RL++D ++++L DGKD L V++++A ++H L C R
Sbjct: 365 CKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRK 424
Query: 575 LEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAAR 616
E K RWL AF +ER V+ D+E G ++ A ++A++
Sbjct: 425 PEQKQRWLKAFAREREQVQLDQETGFSITELQRKQAMLNASK 466
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 401 bits (1032), Expect = e-135
Identities = 175/399 (43%), Positives = 263/399 (65%), Gaps = 3/399 (0%)
Query: 232 LRVSQEDTVEDCLAALASGG--SKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLH 289
L V+QED VE+ + + +G + L + DQ+R+ V+ E+++TER ++K L
Sbjct: 2 LWVNQEDGVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLK 61
Query: 290 DVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGET 349
D+ EGYL +CR+R DMFS EQ++ IFGN+EDI FQ F+ DLE + + D P+ S IG
Sbjct: 62 DICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPC 121
Query: 350 FLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPV 409
FL+H+ GF +YSEYCN+H A L +L + + Y FFEACRL++ +I+I +DG+LLTPV
Sbjct: 122 FLEHQDGFWIYSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPV 181
Query: 410 QRICKYPLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQR 469
Q+ICKYPLQLAELLKYT DH DY + AL MR+V INERKRR+E+++K+A WQ
Sbjct: 182 QKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQAS 241
Query: 470 VEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNT-ITLFLFDHQLVYCKRDILKRNTHVYK 528
V WEG+D+++ SS+LI+ GE+ + N FLFDHQ+V CK+D+++R+ YK
Sbjct: 242 VLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYK 301
Query: 529 ARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQE 588
R+++D ++I++ DG+D V++++A K+H + ++ LF + LE+K RWL AF++E
Sbjct: 302 GRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREE 361
Query: 589 RALVEQDREDGLEFAPAAKELARMSAARCHSSRPPVVKH 627
R +V++D + G E + K A M+ + + K
Sbjct: 362 RKMVQEDEKIGFEISENQKRQAAMTVRKASKQKVTQRKW 400
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 336 bits (863), Expect = e-108
Identities = 96/454 (21%), Positives = 178/454 (39%), Gaps = 44/454 (9%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW-----WGTRGEASGWFPSAFVRLRVS 235
+ ++ EL F A D+ +V D + W + G P V
Sbjct: 82 LSTCCEKFGLKRSEL-FEAFDLFDVQDFGKVIYTLSALSWTPIAQNRGIMPFPTEEESVG 140
Query: 236 QED-----------------TVEDCLAALASGGS---KTLRRRTSISL---LSNDQVRSR 272
ED + DC+ + G + L R +S+ ++ R
Sbjct: 141 DEDIYSGLSDQIDDTVEEDEDLYDCVENEEAEGDEIYEDLMRSEPVSMPPKMTEYDKRCC 200
Query: 273 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDL 332
+RE+ TE + L + + +L +R P+ I+ IF N+ED+L + FL+++
Sbjct: 201 CLREIQQTEEKYTDTLGSIQQHFLKPLQR---FLKPQDIEIIFINIEDLLRVHTHFLKEM 257
Query: 333 ETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNN-YSKFFEACR 391
+ L P + + + F+K+K F +Y YC+ A L + E C
Sbjct: 258 KEALGT--PGAANLYQVFIKYKERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECS 315
Query: 392 LMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLIN 451
L L+ P+QR+ KY L L EL+K+T+ + + + AL+AMRD+A +N
Sbjct: 316 QRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-EAMEKENLRLALDAMRDLAQCVN 374
Query: 452 ERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNT-ITLFLFDH 510
E KR E+L ++ +Q +E + + + GE+ + + FL D
Sbjct: 375 EVKRDNETLRQITNFQLSIENLDQS--LAHYGRPKIDGELKITSVERRSKMDRYAFLLDK 432
Query: 511 QLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLF 570
L+ CKR + +++ K +N+ + Q+ + G H + +
Sbjct: 433 ALLICKR---RGDSYDLKDFVNLHSFQVRDDSSGDRD--NKKWSHMFLLIEDQGAQGYEL 487
Query: 571 CCRSLEDKARWLAAFQQERALVEQDREDGLEFAP 604
++ E K +W+ F+ + + +
Sbjct: 488 FFKTRELKKKWMEQFEMAISNIYPENATANGHDF 521
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 323 bits (829), Expect = e-105
Identities = 78/336 (23%), Positives = 151/336 (44%), Gaps = 15/336 (4%)
Query: 264 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILA 323
++ R +RE+ TE + L + + ++ +R P+ ++TIF N+E++ +
Sbjct: 20 MTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFS 76
Query: 324 FQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNN- 382
+ FL++L+ L P + + + F+K+K F +Y YC+ A L ++
Sbjct: 77 VHTHFLKELKDALAG--PGATTLYQVFIKYKERFLVYGRYCSQVESASKHLDQVATARED 134
Query: 383 YSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEA 442
E C L L+ P+QR+ KY L L EL+K+T+ D + + AL+A
Sbjct: 135 VQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHTQ-DATEKENLRLALDA 193
Query: 443 MRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNT 502
MRD+A +NE KR E+L ++ +Q +E + + + GE+ + + T
Sbjct: 194 MRDLAQCVNEVKRDNETLRQITNFQLSIENLDQS--LANYGRPKIDGELKITSVERRSKT 251
Query: 503 -ITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHC 561
FL D L+ CKR + +++ KA +N+ + Q+ + G+ H +
Sbjct: 252 DRYAFLLDKALLICKR---RGDSYDLKASVNLHSFQVRDDSSGERD--NKKWSHMFLLIE 306
Query: 562 SDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDRE 597
+ ++ E K +W+ F+ + + +
Sbjct: 307 DQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENA 342
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 306 bits (785), Expect = 2e-99
Identities = 67/352 (19%), Positives = 127/352 (36%), Gaps = 20/352 (5%)
Query: 251 GSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQ 310
GS + L + + R + EL E D ++ L + Y + + + + ++
Sbjct: 1 GSSGSSGCVNQVLTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAYHDPMLKLS-IMTEQE 59
Query: 311 IQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMA 370
+ IFG L+ ++ L L +G + Y YC++ A
Sbjct: 60 LNQIFGTLDSLIPLHEELLSQLRDVRK-PDGSTEHVGPILVGWLPCLSSYDSYCSNQVAA 118
Query: 371 IATLQELYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDH 430
A L Q + F + C ++ L +L P R+ KYPL L E+L++T D+
Sbjct: 119 KALLDHKKQDHRVQDFLQRCLESPFSRKLDLWNFLDIPRSRLVKYPLLLREILRHTPNDN 178
Query: 431 PDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGE 490
PD + EA+ ++ + IN + E +E + + LI++S L GE
Sbjct: 179 PDQQHLEEAINIIQGIVAEINTKTGESECRYYK-ERLLYLEEGQKDSLIDSSRVLCCHGE 237
Query: 491 VIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNT--HVYKARLNIDTSQIINLPDGKDPH 548
+ + +FLF LV + +Y+ + + + +L DG+
Sbjct: 238 LKNNRG----VKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRL 293
Query: 549 LGVTVRHA-----------IKIHCSDKDKWLLFCCRSLEDKARWLAAFQQER 589
G + + + +K +WL +Q +
Sbjct: 294 GGSLRGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 300 bits (769), Expect = 1e-96
Identities = 81/369 (21%), Positives = 150/369 (40%), Gaps = 40/369 (10%)
Query: 264 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILA 323
LS+ +V+ EL+ TER +VK L+ + E YL ++ + +++ +FGNL +++
Sbjct: 6 LSDADKLRKVICELLETERTYVKDLNCLMERYLKPLQKE-TFLTQDELDVLFGNLTEMVE 64
Query: 324 FQSSFLEDLE------------TKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAI 371
FQ FL+ LE K+D +G +FL + F++YS +C SH
Sbjct: 65 FQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKVP 124
Query: 372 ATLQELYQHNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHP 431
L + + F +A + L+ YL+ P+QR+ KYPL L EL T +
Sbjct: 125 KVLVKAKTDTAFKAFLDAQNPRQQHS-STLESYLIKPIQRVLKYPLLLRELFALTDAESE 183
Query: 432 DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETS-SQLIHQGE 490
++ + A++ M VA INE ++ E + + E +++ + S L+
Sbjct: 184 EHYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLIAEQTGEKKEVADLSMGDLLLHTS 243
Query: 491 VIRVTSGMWTNTI------TLFLFDHQLVYCKRDILKR----------------NTHVYK 528
VI + F+F +V +D K+ + ++
Sbjct: 244 VIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFR 303
Query: 529 ARLNIDTSQIINLPDGK-DPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQ 587
+ + Q+ LP + + + H ++ CC S E + +L +
Sbjct: 304 HMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHS 363
Query: 588 ERALVEQDR 596
L ++ R
Sbjct: 364 --ILRDKHR 370
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 293 bits (750), Expect = 4e-94
Identities = 65/359 (18%), Positives = 138/359 (38%), Gaps = 47/359 (13%)
Query: 267 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQS 326
+Q +V+ + R +++ L+ + + + + +FS ++ IF + DI
Sbjct: 1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSV 60
Query: 327 SFLEDLETKLD--WDAPYKSCIGETFLK--HKSGFRMYSEYCNSHPMA---IATLQELYQ 379
L +E ++ + +G F + F Y Y L +L +
Sbjct: 61 KLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYESYARDILRPGFHDRFLSQLSK 120
Query: 380 HNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEA 439
+ ++ L LL PV Y L +L + + D D + +A
Sbjct: 121 PGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKS-EDQEDKECLKQA 179
Query: 440 LEAMRDVAMLINE----------------------RKRRMESLEKLAAWQQRVEGWEGED 477
+ A+ +V + + K + +++K+ Q+ ++GWEG+D
Sbjct: 180 ITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKD 239
Query: 478 LIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKR-------NTHVYKAR 530
+ + ++ I +G + RV + + +FLFD ++ CK + + + K +
Sbjct: 240 IGQCCNEFIMEGTLTRVGAK---HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEK 296
Query: 531 LNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQER 589
+ QI + D + +HA +I D+ ++F +S E+K W+AA +
Sbjct: 297 FFMRKVQINDKDDTNE------YKHAFEIILKDE-NSVIFSAKSAEEKNNWMAALISLQ 348
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 288 bits (740), Expect = 1e-93
Identities = 68/292 (23%), Positives = 130/292 (44%), Gaps = 15/292 (5%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 238
++D+ A +EL F G +I VL+ D DWW G G FPS +V+L +
Sbjct: 3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDP 62
Query: 239 TVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAE 298
+ + C L ++ R + ELI TE ++V L V+E + +
Sbjct: 63 SQQWCS-----------DLHLLDMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQ-K 110
Query: 299 CRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLE--TKLDWDAPYKSCIGETFLKHKSG 356
+++ + +++ IF N ++++ L+ L K+ + IG+
Sbjct: 111 PLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPH 170
Query: 357 FRMYSEYCNSHPMAIATLQELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKY 415
+ Y +C+ A +Q+ ++ +F + + +PL ++L P+QR+ +Y
Sbjct: 171 MQPYIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMPLSSFILKPMQRVTRY 230
Query: 416 PLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQ 467
PL + +L+ T +HPD+ + ALE ++ +NE R E+ ++L Q
Sbjct: 231 PLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQ 282
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 292 bits (749), Expect = 7e-93
Identities = 70/384 (18%), Positives = 137/384 (35%), Gaps = 28/384 (7%)
Query: 257 RRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR--------RNDMFSP 308
R ++ + +EL+++E+ +V++L ++ + R D +
Sbjct: 10 GRENLYFQGGQSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAR 69
Query: 309 EQIQTIFGNLEDILAFQSSFLEDLETKL-DWDAPYKSCIGETFLKHKSGFRMYSEYCNSH 367
E+++ L I LE+LE +L +W++ + + FL + GF ++ +
Sbjct: 70 EELRQGLSELPAIHDLHQGILEELEERLSNWESQ--QKVADVFLAREQGFDHHATHILQF 127
Query: 368 PMAIATLQELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYT 426
+ L E H+ + LL VQR+ +Y + L + L
Sbjct: 128 DRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKHRLLRVVQRLFQYQVLLTDYLNNL 187
Query: 427 KTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLI 486
D +Y AL + V N+ + E+L+KL + V G DL++ + +
Sbjct: 188 CPDSAEYDNTQGALSLISKVTDRANDSMEQGENLQKLVHIEHSVRGQ--GDLLQPGREFL 245
Query: 487 HQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKD 546
+G +++VT LFL + L+Y K + K L + ++ K
Sbjct: 246 KEGTLMKVTGK-NRRPRHLFLMNDVLLYTYPQ--KDGKYRLKNTLAVANMKVSRPVMEKV 302
Query: 547 PHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAA 606
P+ + + L+ S ++ W RAL E + L +
Sbjct: 303 PY---------ALKIETSESCLMLSASSCAERDEWYGCLS--RALPEDYKAQALAAFHHS 351
Query: 607 KELARMSAARCHSSRPPVVKHRSK 630
E+ P +V
Sbjct: 352 VEIRERLGVSLGERPPTLVPVTHV 375
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 273 bits (698), Expect = 2e-84
Identities = 67/387 (17%), Positives = 136/387 (35%), Gaps = 22/387 (5%)
Query: 262 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 321
++ ++ R + ELI TE ++ L V E + + ++ IF N +++
Sbjct: 20 TMQPIERKRQGYIHELIQTEERYMADLQLVVEVFQKRMAESG-FLTEGEMALIFVNWKEL 78
Query: 322 LAFQSSFLEDLET--KLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQ 379
+ + L+ L K + IG+ S + Y +C+ A LQ+
Sbjct: 79 IMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELSHMQAYIRFCSCQLNGAALLQQKTD 138
Query: 380 HN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITE 438
+ ++ +F + +PL +LL P+QRI +YPL + +L+ T H D+ +
Sbjct: 139 EDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKL 198
Query: 439 ALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGE--------DLIETSSQLIHQGE 490
ALE ++ +NE R E+ ++L Q V+ +L+H G+
Sbjct: 199 ALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQLIFNSLTNCLGPRKLLHSGK 258
Query: 491 VIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDT-------SQIINLPD 543
+ + S + FLF+ L+ + + + + I L +
Sbjct: 259 LYKTKSNK---ELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNE 315
Query: 544 GKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFA 603
H S D+ ++ ++ W+ + + E A
Sbjct: 316 VLVKLPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYIDTEKKQREKA 375
Query: 604 PAAKELARMSAARCHSSRPPVVKHRSK 630
A+ R + ++
Sbjct: 376 YQARSQKTSGIGRLMVHVIEATELKAC 402
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 278 bits (713), Expect = 3e-82
Identities = 77/453 (16%), Positives = 159/453 (35%), Gaps = 65/453 (14%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
+D V AV ++++ + +L I + +D
Sbjct: 122 IDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAM--------------- 166
Query: 233 RVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVS 292
D V + L S +Q +V+ + R +++ L+ +
Sbjct: 167 ---CADKVLMDMFHQDVEDINILSLTDEEPSTSGEQTYYDLVKAFMAEIRQYIRELNLII 223
Query: 293 EGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDW--DAPYKSCIGETF 350
+ + + +FS ++ IF + DI L +E ++ + +G F
Sbjct: 224 KVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCF 283
Query: 351 --LKHKSGFRMYSEYCNSHPMAIAT---LQELYQHNNYSKFFEACRLMRGLIEIPLDGYL 405
L + F Y Y L +L + + ++ L L
Sbjct: 284 EDLAEELAFDPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLL 343
Query: 406 LTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINE------------- 452
L PV Y L +L + + D D + +A+ A+ +V + +
Sbjct: 344 LAPVYHCLHYFELLKQLEEKS-EDQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSE 402
Query: 453 ---------RKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTI 503
K + +++K+ Q+ ++GWEG+D+ + ++ I +G + RV + +
Sbjct: 403 SACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAK---HER 459
Query: 504 TLFLFDHQLVYCKRDILKRNTHV-------YKARLNIDTSQIINLPDGKDPHLGVTVRHA 556
+FLFD ++ CK + + K + + QI + D + +HA
Sbjct: 460 HIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNE------YKHA 513
Query: 557 IKIHCSDKDKWLLFCCRSLEDKARWLAAFQQER 589
+I D + ++F +S E+K W+AA +
Sbjct: 514 FEIILKD-ENSVIFSAKSAEEKNNWMAALISLQ 545
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 259 bits (663), Expect = 6e-81
Identities = 65/351 (18%), Positives = 139/351 (39%), Gaps = 27/351 (7%)
Query: 262 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 321
SL + R V+ EL+ TE V++L + + + + F E++Q IF +L+++
Sbjct: 20 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFF-QPMAECLFFPLEELQNIFPSLDEL 78
Query: 322 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF------RMYSEYCNSHPMAIATLQ 375
+ S FL+ L + IG+ L G ++ S +C+ A+ L+
Sbjct: 79 IEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLK 138
Query: 376 ELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYV 434
+ + + F + + L + T +QR+ KYPL L + + T+ + +
Sbjct: 139 AKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE-EPTERE 197
Query: 435 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW-----------EGEDLIETSS 483
K+ A E R++ +N+ R ME L +L +Q+R++ E ++L T
Sbjct: 198 KVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKK 257
Query: 484 QLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLN------IDTSQ 537
+L+H+G + + + + L D L+ +R + + L
Sbjct: 258 KLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRP 317
Query: 538 IINLPDGKDPHLGVTVR-HAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQ 587
++ L + + + + + +++ ++ W A +
Sbjct: 318 VLRLTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITE 368
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 257 bits (659), Expect = 2e-80
Identities = 58/353 (16%), Positives = 143/353 (40%), Gaps = 30/353 (8%)
Query: 262 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 321
L + R V+ EL TE ++ L + + + ++ ++ E++ +F NL ++
Sbjct: 14 GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFY-QRMKKENLMPREELARLFPNLPEL 72
Query: 322 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSG------FRMYSEYCNSHPMAIATLQ 375
+ +S+ E ++ + + P I + L G ++ +++C+ +A+ ++
Sbjct: 73 IEIHNSWCEAMKKLRE-EGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIK 131
Query: 376 ELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYV 434
+ + F + + L +++ +QR+ KYPL L ++K+T+ ++
Sbjct: 132 TKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHE 191
Query: 435 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW-----------EGEDLIETSS 483
K+ A + R++ +NE ++ E+ +L +Q+R++ E + L T+
Sbjct: 192 KLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTR 251
Query: 484 QLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD 543
++IH+G + S T + + L + LV ++ ++ ++ + +S
Sbjct: 252 KMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQ-DEKLLLKCHSKTAVGSSDSKQTFS 310
Query: 544 GKDPHLGVTVRHA---------IKIHCSDKDKWLLFCCRSLEDKARWLAAFQQ 587
V +R I + + DK W+ ++
Sbjct: 311 PVLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEE 363
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 256 bits (655), Expect = 5e-80
Identities = 73/359 (20%), Positives = 134/359 (37%), Gaps = 31/359 (8%)
Query: 270 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS-PEQIQTIFGNLEDILAFQSSF 328
V+ EL+ TE+ +V L + EGY+A + S + + +FGN++ I + +
Sbjct: 13 SMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHRDY 72
Query: 329 LEDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQHNNYSKFFE 388
+ D + + F+KH+ MY YC + P + + E +FE
Sbjct: 73 FLQELQRCLKDPD---WLAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFGD-----SYFE 124
Query: 389 ACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALEAMRDVAM 448
R G + L+ L+ PVQRI KY L L + LKY D + +A+E M V
Sbjct: 125 ELRQQLG-HRLQLNDLLIKPVQRIMKYQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPK 183
Query: 449 LINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLF 508
N+ M +L +L ++ ++ L+ + + + E + S +FLF
Sbjct: 184 RCND----MMTLGRLRGFEGKLTAQ--GKLLGQDTFWVTEPEAGGLLSS-RGRERRVFLF 236
Query: 509 DHQLVYCKR-----DILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSD 563
+ +++ + + +VYK + + + G +T R
Sbjct: 237 EQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQGDPCRFALTSRGPEG----- 291
Query: 564 KDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRP 622
+ + W+ Q + + D L + E R + RP
Sbjct: 292 GIQRYVLQAADPAISQAWIKHVAQIL----ESQRDFLNALQSPIEYQRRESQTNSLGRP 346
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 255 bits (652), Expect = 8e-79
Identities = 58/353 (16%), Positives = 143/353 (40%), Gaps = 30/353 (8%)
Query: 262 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 321
L + R V+ EL TE ++ L + + + ++ ++ E++ +F NL ++
Sbjct: 56 GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFY-QRMKKENLMPREELARLFPNLPEL 114
Query: 322 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSG------FRMYSEYCNSHPMAIATLQ 375
+ +S+ E ++ + + P I + L G ++ +++C+ +A+ ++
Sbjct: 115 IEIHNSWCEAMKKLRE-EGPIIKEISDLMLARFDGPAREELQQVAAQFCSYQSIALELIK 173
Query: 376 ELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYV 434
+ + F + + L +++ +QR+ KYPL L ++K+T+ ++
Sbjct: 174 TKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHTEGGTSEHE 233
Query: 435 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG-----------WEGEDLIETSS 483
K+ A + R++ +NE ++ E+ +L +Q+R++ E + L T+
Sbjct: 234 KLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSLDLTTR 293
Query: 484 QLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD 543
++IH+G + S T + + L + LV ++ ++ ++ + +S
Sbjct: 294 KMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQ-DEKLLLKCHSKTAVGSSDSKQTFS 352
Query: 544 GKDPHLGVTVRHA---------IKIHCSDKDKWLLFCCRSLEDKARWLAAFQQ 587
V +R I + + DK W+ ++
Sbjct: 353 PVLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEE 405
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 253 bits (648), Expect = 1e-78
Identities = 75/366 (20%), Positives = 144/366 (39%), Gaps = 28/366 (7%)
Query: 262 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 321
L + R V+ EL TER V+ L + + + + R + SP +++ IF NLEDI
Sbjct: 17 GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFY-QRVSREGILSPSELRKIFSNLEDI 75
Query: 322 LAFQSSFLEDLETKLDWD-APYKSCIGETFLKHKSG------FRMYSEYCNSHPMAIATL 374
L E ++ + IGE L SG + +C++ P A+ +
Sbjct: 76 LQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEEKLKHAAATFCSNQPFALEMI 135
Query: 375 QELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDY 433
+ + + + F + + L + T +QR+ KYPL L + KYT+ +
Sbjct: 136 KSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYTE-WPTER 194
Query: 434 VKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW-----------EGEDLIETS 482
K+ +A + R + +N+ + E+ ++L +Q+R++ E +L T
Sbjct: 195 EKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRNLDLTK 254
Query: 483 SQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILK------RNTHVYKARLNIDTS 536
++IH+G ++ + T + L + LV ++ + A S
Sbjct: 255 RKMIHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFS 314
Query: 537 QIINLPDGKDPHLGVTVRHAIKIHCSD-KDKWLLFCCRSLEDKARWLAAFQQERALVEQD 595
+I L + + I SD + +++ +K W + A V++
Sbjct: 315 PVIKLSTVLVRQVATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKEQ 374
Query: 596 REDGLE 601
DG
Sbjct: 375 SVDGGH 380
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 250 bits (641), Expect = 2e-78
Identities = 80/336 (23%), Positives = 143/336 (42%), Gaps = 36/336 (10%)
Query: 265 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPE---QIQTIFGNLEDI 321
+ + + ++ ELI TE+ +V+ L + + YL E + P + IFGN+++I
Sbjct: 5 KSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEI 64
Query: 322 LAFQSS-FLEDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQH 380
F ++ FL++LE +G F+ F+MY YC + P + + E
Sbjct: 65 YEFHNNIFLKELEKYEQLPE----DVGHCFVTWADKFQMYVTYCKNKPDSTQLILE---- 116
Query: 381 NNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEAL 440
+ +F+ + GL + YL+ PVQRI KY L L ELL + + + L
Sbjct: 117 -HAGSYFDEIQQRHGL-ANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEI---KDGL 171
Query: 441 EAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWT 500
E M V N+ L + + +E +GE +++ S Q+ +IR
Sbjct: 172 EVMLSVPKRANDAMHL----SMLEGFDENIE-SQGELILQESFQVWDPKTLIR-----KG 221
Query: 501 NTITLFLFDHQLVYCK--RDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIK 558
LFLF+ LV+ K +D R+ ++YK++L + +G + V
Sbjct: 222 RERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRT-- 279
Query: 559 IHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQ 594
D ++ S+E+K W+ + + E+
Sbjct: 280 ---PTSDNKIVLKASSIENKQDWIKHIR--EVIQER 310
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 254 bits (649), Expect = 6e-77
Identities = 66/351 (18%), Positives = 140/351 (39%), Gaps = 27/351 (7%)
Query: 262 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 321
SL + R V+ EL+ TE V++L + + + + F E++Q IF +L+++
Sbjct: 173 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFF-QPMAECLFFPLEELQNIFPSLDEL 231
Query: 322 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF------RMYSEYCNSHPMAIATLQ 375
+ S FL+ L + IG+ L G ++ S +C+ A+ L+
Sbjct: 232 IEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLK 291
Query: 376 ELYQHN-NYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYV 434
+ + + F + + L + T +QR+ KYPL L + + T+ + +
Sbjct: 292 AKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE-EPTERE 350
Query: 435 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW-----------EGEDLIETSS 483
K+ A E R++ +N+ R ME L +L +Q+R++ E ++L T
Sbjct: 351 KVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKNLDITKK 410
Query: 484 QLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVY-KARLNIDTSQIINLP 542
+L+H+G + + + + L D L+ +R + + + + + P
Sbjct: 411 KLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRP 470
Query: 543 DGKDPHLGV----TVRHAIKI--HCSDKDKWLLFCCRSLEDKARWLAAFQQ 587
+ T A + + + +++ ++ W A +
Sbjct: 471 VLRLTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITE 521
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 247 bits (632), Expect = 9e-77
Identities = 83/357 (23%), Positives = 144/357 (40%), Gaps = 55/357 (15%)
Query: 265 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRN-----DMFSPEQIQTIFGNLE 319
S +R V+ EL++TER +V+ L V EGY AE + +FGN+E
Sbjct: 7 SLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNME 66
Query: 320 DILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQ 379
+I F + D P +G FL+ F++Y +YC + P + + ++
Sbjct: 67 EIYHFHNRIFLRELESC-IDCP--ELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQC-- 121
Query: 380 HNNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEA 439
+ FF+ C+ ++ LD YLL PVQRI KY L L E+LKY+K + EA
Sbjct: 122 --SDCPFFQECQKKLDH-KLSLDSYLLKPVQRITKYQLLLKEMLKYSK-HCEGAEDLQEA 177
Query: 440 LEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVI------- 492
L ++ + +N+ + G++G + +L+ QG
Sbjct: 178 LSSILGILKAVNDSMH-----------LIAITGYDGN--LGDLGKLLMQGSFSVWTDHKK 224
Query: 493 -----RVTSGMWTNTITLFLFDHQLVYCKR------DILKRNTHVYKARLNIDTSQIINL 541
+ + LFL + +++CK+ K ++ YK LN+ I
Sbjct: 225 GHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITEN 284
Query: 542 PDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDRED 598
G +I + +++ + + E KA W+ A + + L Q +
Sbjct: 285 VKGDT--------KKFEIWYNAREEVYIIQAPTPEIKAAWVNAIR--KVLTSQLQAC 331
>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR
{Homo sapiens} SCOP: a.87.1.1
Length = 209
Score = 238 bits (610), Expect = 2e-75
Identities = 52/209 (24%), Positives = 91/209 (43%), Gaps = 6/209 (2%)
Query: 262 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 321
+ N + V++ ++ TE ++ K L V YL + + S I + GNLE+I
Sbjct: 6 TTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTS-EKLSSANISYLMGNLEEI 64
Query: 322 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFR-MYSEYCNSHPMAIATLQELYQH 380
+FQ ++ LE + +G FL + +Y YC +HP A+ L E +
Sbjct: 65 CSFQQMLVQSLEECTK-LPEAQQRVGGCFLNLMPQMKTLYLTYCANHPSAVNVLTEHSE- 122
Query: 381 NNYSKFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEAL 440
+F E I + L L P R+ KYP L EL ++ + H D I +++
Sbjct: 123 -ELGEFMETKGASSPGI-LVLTTGLSKPFMRLDKYPTLLKELERHMEDYHTDRQDIQKSM 180
Query: 441 EAMRDVAMLINERKRRMESLEKLAAWQQR 469
A ++++ E ++R E ++ R
Sbjct: 181 AAFKNLSAQCQEVRKRKELELQILTEAIR 209
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 96.7 bits (241), Expect = 1e-24
Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 237
+V AEAVWDHV M EL F+AGDVI+VLD ++DWWWG + GWFP++FVRL V+QE
Sbjct: 10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQE 69
Query: 238 DTVEDCLAALASG 250
D VE+ + +SG
Sbjct: 70 DEVEEG-SGPSSG 81
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 87.8 bits (217), Expect = 3e-20
Identities = 26/184 (14%), Positives = 61/184 (33%), Gaps = 15/184 (8%)
Query: 426 TKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE---------GWEGE 476
TK + + + ++L ++DV ++ + E +L + + G
Sbjct: 3 TKDNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFA 62
Query: 477 DLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTS 536
+L+ G V + + L LV+ + K +++ + S
Sbjct: 63 KEDLKRKKLVRDGSVFLKNAAGRLKEVQAVLLTDILVFLQE---KDQKYIFASLDQK--S 117
Query: 537 QIINLPDGKDPHLGVTVRHAIKIHCSDKDK-WLLFCCRSLEDKARWLAAFQQERALVEQD 595
+I+L + + I D + S E++ W+ Q + +D
Sbjct: 118 TVISLKKLIVREVAHEEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLNRD 177
Query: 596 REDG 599
++G
Sbjct: 178 EDEG 181
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 81.8 bits (202), Expect = 2e-19
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 242
+ ++ E+ F AG ++VL+ + WW+ GE GW PS ++ L +++
Sbjct: 13 TCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQPDPSG 72
Query: 243 CLAALASG 250
+ +SG
Sbjct: 73 KESGPSSG 80
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 79.9 bits (197), Expect = 2e-18
Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 10/114 (8%)
Query: 485 LIHQGEVIRVTSGMWT--NTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLP 542
L++ G+++ + + FL + L+ +R + Y A +D ++N+
Sbjct: 8 LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVK 67
Query: 543 DGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 596
D ++ K+ + +F + + K WL ++ + + R
Sbjct: 68 DNPP------MKDMFKLLMF--PESRIFQAENAKIKREWLEVLEETKRALSDKR 113
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 79.6 bits (196), Expect = 6e-18
Identities = 16/123 (13%), Positives = 45/123 (36%), Gaps = 8/123 (6%)
Query: 467 QQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHV 526
+ ++ WEG+D+ + + V++ + LF L+ + + +
Sbjct: 11 SEPIQAWEGDDIKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSAS-PRMSGFM 69
Query: 527 YKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQ 586
Y+ ++ I + L + + +I S ++ ++ C + +D W+
Sbjct: 70 YQGKIPIAGMVVNRLDEIEG------SDCMFEITGSTVERIVVH-CNNNQDFQEWMEQLN 122
Query: 587 QER 589
+
Sbjct: 123 RLT 125
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 77.9 bits (192), Expect = 7e-18
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 170 PIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAF 229
I ++ A++D A+E EL F+ G++I VLD D +WW G G FPS F
Sbjct: 9 EIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNF 68
Query: 230 VRLRVSQEDTVEDCLAALASG 250
V ++ E ++ +SG
Sbjct: 69 VTTNLNIETEAAA-VSGPSSG 88
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 74.3 bits (183), Expect = 9e-17
Identities = 21/63 (33%), Positives = 29/63 (46%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 237
VV A A + + A+EL FR GDV+ + + DWW G G P ++ L E
Sbjct: 10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTE 69
Query: 238 DTV 240
V
Sbjct: 70 KQV 72
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 73.9 bits (182), Expect = 1e-16
Identities = 15/67 (22%), Positives = 34/67 (50%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 239
L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+ +
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSA 66
Query: 240 VEDCLAA 246
+ L
Sbjct: 67 SRENLGG 73
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 73.3 bits (181), Expect = 1e-16
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A A++D A+E +ELGFR+G+V+EVLD+ + WW G G FP+ +V
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 73.3 bits (181), Expect = 1e-16
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
AEA++D EL F+AGDVI +L +++DW GT A+G FP +FV++
Sbjct: 7 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 73.6 bits (181), Expect = 2e-16
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 240
A + + A E+ + GD++ +L++ ++DWW + G+ P+A+V+ ++
Sbjct: 3 APPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK-KLDSGTGK 60
Query: 241 EDCLAAL 247
E LA
Sbjct: 61 ELVLALY 67
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 72.7 bits (179), Expect = 3e-16
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A++ V E E+L R GD+I +L+ + DWW G + G+FP+ FV+
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQR 61
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 81.8 bits (201), Expect = 3e-16
Identities = 81/538 (15%), Positives = 149/538 (27%), Gaps = 184/538 (34%)
Query: 108 FHWDVCNSYRKMISSPSPVKTRMENCA-----DVQTRTK----RIRPHHALRRSVSQPLG 158
+ + + + + PS + D Q K R++P+ LR+++
Sbjct: 91 YKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---- 145
Query: 159 INELSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAEELGF----RAGDVI---EVLDTLDR 211
EL P V++ + LG A DV +V +D
Sbjct: 146 --ELRP----------AKNVLI------D-GV----LGSGKTWVALDVCLSYKVQCKMDF 182
Query: 212 DWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALAS-------GGSKTLRRRTSISLL 264
+W L + ++ E L L + ++I L
Sbjct: 183 KIFW----------------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 265 SNDQVRSRVVRELINTERDFVK---VLHDVSEGYLAE-----CR----RRN----DMFSP 308
+ +++ + R L+ + + VL +V C+ R D S
Sbjct: 227 IHS-IQAEL-RRLL-KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 309 EQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLK--HKSGFRMYSEYCNS 366
I L+ + D E K LK + E +
Sbjct: 284 ATTTHIS--LDH---HSMTLTPD-EVK------------SLLLKYLDCRPQDLPREVLTT 325
Query: 367 HPMAIATLQEL----------YQHNNYSKFFEACRLMRGLIEIPLDGYLLTPV-QRICKY 415
+P ++ + E ++H N K IE L+ +L P R K
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-------IESSLN--VLEPAEYR--KM 374
Query: 416 PLQLAELLKYTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEG 475
+L+ P I L L + W ++
Sbjct: 375 FDRLSVF--------PPSAHIPTIL-------------------LSLI--WFDVIK---- 401
Query: 476 EDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTH-----VYKAR 530
D++ ++L V + T+ + L + + H Y
Sbjct: 402 SDVMVVVNKLHKYSLVEK-----QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 531 LNIDTSQIINLPDGKDP----HLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAA 584
D+ + +P D H+G H I ++ LF R + R+L
Sbjct: 457 KTFDSDDL--IPPYLDQYFYSHIG---HHLKNIEHP--ERMTLF--RMVFLDFRFLEQ 505
Score = 65.6 bits (159), Expect = 3e-11
Identities = 68/477 (14%), Positives = 143/477 (29%), Gaps = 107/477 (22%)
Query: 29 RHPVTRDCTIFGPL-IWRSSKEHRKGKKASRNQKCNSGDSGIQIE-MVGRG----TGAEL 82
R + D +F + R + + K ++A + + I+ ++G G
Sbjct: 116 RDRLYNDNQVFAKYNVSRL-QPYLKLRQALLELRPAKN---VLIDGVLGSGKTWVALDVC 171
Query: 83 QSRGLPRRRGQMV--------RRTHSDLGG-QRLFHWDVCNSYRKMISSPSPVKTRMENC 133
S + + + + L Q+L + N + S +K R+
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIH-- 228
Query: 134 ADVQTRTKRIRPHHALRRS------VSQPLGINELSP----LL--RRKPIGMDEDFVVLA 181
+Q +R+ V N + LL R K + D L+
Sbjct: 229 -SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-TD----FLS 282
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-----EASGWFP------SAFV 230
A H++++ + +V +L + R E P + +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLK-----YLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 231 RLRVSQ------------EDTVEDCLAALASGGSKTLRRR-TSISLLSND-----QVRSR 272
R ++ +E L L R+ +S+ + S
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 273 VVRELINTE-RDFVKVLHDVSEGYLAECRRRNDMFS-PEQIQTIFGNLEDILAFQSSFLE 330
+ ++I ++ V LH S L E + + S P + LE+ A S ++
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 331 --DLETKLDWDAPYKSCIGETFLK----HKSGFRMYSEYCNSHPMAIATLQELYQHNNYS 384
++ D D + + F H + ++ ++
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--------TLFRMVFL--DF- 500
Query: 385 KFFEACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHPDYVKITEALE 441
+F E ++ G +L +Q++ Y Y + P Y ++ A+
Sbjct: 501 RFLEQ-KIRHDSTAWNASGSILNTLQQLKFY-------KPYICDNDPKYERLVNAIL 549
Score = 50.2 bits (119), Expect = 2e-06
Identities = 78/515 (15%), Positives = 151/515 (29%), Gaps = 171/515 (33%)
Query: 187 HVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR-LRVSQ-ED------ 238
H+ E E ++ D++ V F AFV +D
Sbjct: 6 HMDFETGEHQYQYKDILSV-------------------FEDAFVDNFDCKDVQDMPKSIL 46
Query: 239 TVEDCLAALASGGSKTLRRRTSISLLS-NDQVRSRVVRELINTERDFV--------KVLH 289
+ E+ + S + + R +LLS +++ + V E++ F+ +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 290 DVSEGYLAECRRR----NDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPY--- 342
++ Y+ E R R N +F+ + L+ L + + L +L A
Sbjct: 107 MMTRMYI-EQRDRLYNDNQVFAKYNVS----RLQPYLKLRQA-LLELR-----PAKNVLI 155
Query: 343 -------KSC-IGETFLKHK----SGFRMY---SEYCNSHPMAIATLQELYQHNNYSKFF 387
K+ + L +K F+++ + CNS + LQ+L + +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--- 212
Query: 388 EACRLMRGLIEIPLDGYLLTPVQRICKYPLQLAELLKYTKTDHP------DYVKITEALE 441
I L RI +L LLK + V+ +A
Sbjct: 213 -WTSRSDHSSNIKL---------RIHSIQAELRRLLK--SKPYENCLLVLLNVQNAKAWN 260
Query: 442 AM----------RDVAM---LINERKRRM------------ESLEKLAAWQQRVEGWEGE 476
A R + L + E L + +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL----DCRPQ 316
Query: 477 DL----IETSSQLIHQ-GEVIRVTSGMWTN-----------TITLFL-----FDHQLVYC 515
DL + T+ + + E IR W N I L +++ ++
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 516 KRDILKRNTHVYKARLNI--------DTSQIIN------LPDGKDPHLGVTVRHAIKIHC 561
+ + + H+ L++ D ++N L + K P I I
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-KQPK-----ESTISIP- 429
Query: 562 SDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 596
+L + + A R++V+
Sbjct: 430 ---SIYLELKVKLENEYA-------LHRSIVDHYN 454
Score = 44.1 bits (103), Expect = 1e-04
Identities = 49/341 (14%), Positives = 104/341 (30%), Gaps = 103/341 (30%)
Query: 319 EDILA-FQSSFLEDLETKLDWDAPYKSCIGETFLKH--KSGFRMYSEYCNSHPMAIATLQ 375
+DIL+ F+ +F+++ + K D P KS + + + H S + +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTL------RLFWTL 71
Query: 376 ELYQHNNYSKFFEACRLMRGLIEIPLD-GYLLTPVQRICKYPLQLAELLKYTK----TDH 430
Q KF E ++ I + +L++P++ + P + + + D+
Sbjct: 72 LSKQEEMVQKFVE------EVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 431 PDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQG- 489
+ K +V R + L + A + R + LI G
Sbjct: 124 QVFAK--------YNV-----SRLQPYLKLRQ-ALLELRPAKN-----V-----LID-GV 158
Query: 490 ----------EVIR---VTSGM-----WTNTITLFLFDHQLVYCKR--DILK-------R 522
+V V M W N L C +L+ +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLN----------LKNCNSPETVLEMLQKLLYQ 208
Query: 523 NTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHC----SD-KDKWLL----FCCR 573
+ +R + ++ + + + L ++ +C + ++ C+
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 574 SL---EDK--ARWLAAFQQERALVEQDREDGLEFAPAAKEL 609
L K +L+A ++ L K L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLD-HHSMTLT-PDEVKSL 306
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 72.3 bits (178), Expect = 3e-16
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
A+ D+ A + +L F G+ I +L DWWWG R G+ P+ V
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 71.1 bits (175), Expect = 8e-16
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 235
A++D A+E EL F+ G++I VLD D +WW G +G FPS FV +S
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTDLS 62
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 71.2 bits (175), Expect = 9e-16
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
+ A A +D+V A EL F+ G + + DWW G G P ++ +
Sbjct: 9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVV 63
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 70.6 bits (174), Expect = 1e-15
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+A++D E+ EL F+ GDVI +++ D +WW G G FPS +V
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 70.7 bits (174), Expect = 1e-15
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
MDE L ++D+ EL + GD++ +L++ ++DWW G+ P+A+++
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 71.2 bits (175), Expect = 1e-15
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 240
A+A+ D + +ELGFR D+I ++ D W G GWFP+ FV + + +
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV-LDERSKE 68
Query: 241 EDCLAALASG 250
+ +SG
Sbjct: 69 YSIASGPSSG 78
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 70.4 bits (173), Expect = 1e-15
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 190 MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLA 245
M E+ + GD++ +L++ ++DWW + G+ P+A+V+ ++ E LA
Sbjct: 1 MGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK-KLDSGTGKELVLA 55
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 70.9 bits (174), Expect = 2e-15
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 168 RKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPS 227
G DE L A++D+ E+ + GD++ +L++ ++DWW + G+ P+
Sbjct: 7 HHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPA 66
Query: 228 AFVRLRVSQED 238
A+V+ +
Sbjct: 67 AYVKKLAAAWS 77
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 69.9 bits (172), Expect = 2e-15
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
+A++D E ELGFR GD I V+D D +WW G +G FP +V
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 70.3 bits (172), Expect = 2e-15
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 189 AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALA 248
AM E+ + GD++ +L++ ++DWW + G+ P+A+V+ ++ E LA
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK-KLDSGTGKELVLALYD 60
Query: 249 S 249
Sbjct: 61 Y 61
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 70.5 bits (173), Expect = 3e-15
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 238
A++D+ A +EL F G +I V++ D DWW G +G FPS +V++
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSSG 94
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 70.1 bits (172), Expect = 3e-15
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 237
L A++D+ E+ + GD++ +L++ ++DWW + G+ P+A+V+ +
Sbjct: 4 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQ 61
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 68.7 bits (169), Expect = 5e-15
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
V + A++ +EL F GD+I + D D +WW GT +G PS +V
Sbjct: 3 VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 69.3 bits (170), Expect = 5e-15
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A++D A E EL F+AG++I VLD D +WW G + G FPS FV
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA 71
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 69.3 bits (170), Expect = 5e-15
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 240
+A++ A + +EL GD++ + + + WW+G+ G FP+A+V S
Sbjct: 10 CKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNT 69
Query: 241 EDCLAALASG 250
+ +SG
Sbjct: 70 ATKASGPSSG 79
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 68.8 bits (169), Expect = 5e-15
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+ A++ +EL F GD+I + D D +WW GT +G PS +V
Sbjct: 7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 60
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 68.9 bits (169), Expect = 7e-15
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
V ++ E EL +AG+V++V++ + WW+ + E GW P+ ++
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL 60
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 69.4 bits (170), Expect = 7e-15
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 232
A+ ++ L F GD+I++L TL+ W +G+ G SG FP+ V+
Sbjct: 11 VIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQP 64
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 68.1 bits (167), Expect = 9e-15
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVL---DTLDRDWWWGTRGEASGWFPSAFVRLRVS 235
VLA+A++D+VA +EL FR GD++ VL WW + G P +++ V
Sbjct: 4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVG 63
Query: 236 QED 238
D
Sbjct: 64 MYD 66
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 67.9 bits (167), Expect = 9e-15
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
EA++ + +LG + GD +++L+ L +W+ G+ +G FP+ +V+
Sbjct: 5 VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 68.0 bits (167), Expect = 1e-14
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 238
+ +++++ +EL + GD+I++ + ++ WW GT G FPS FV+ +
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELEHH 61
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 67.7 bits (166), Expect = 1e-14
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
+ +++++ +EL + GD+I++ + ++ WW GT G FPS FV+
Sbjct: 10 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 61
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 67.4 bits (165), Expect = 2e-14
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT---RGEASGWFPSAFVRL 232
+ ++D A +EL F G+VI V D++WW G + E G FP +FV +
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 67.9 bits (166), Expect = 2e-14
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 240
+ + ++ +EL + GD+IEV+ ++ WW G +G FPS F++ + D +
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDEL 80
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 66.8 bits (164), Expect = 2e-14
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
+A++ + A + +EL F A D+I+++ WW G G FP+ +V
Sbjct: 8 CKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 66.9 bits (164), Expect = 2e-14
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 239
A++ + ++E +L F G+ I V D +WW G+ G+ SG FPS +V+ + S +
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPSS 68
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 66.5 bits (163), Expect = 3e-14
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 232
A A +D+ A E EL F D I ++ +D DWW G + + G FPS +V L
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 66.8 bits (164), Expect = 3e-14
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
++ V EEL G+++ VL + +W G P ++
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYL 59
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 67.0 bits (164), Expect = 3e-14
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 169 KPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSA 228
P ++ A++D+ + +EL F+ G +I V+ D W+ G +G FP
Sbjct: 8 DPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGN 67
Query: 229 FVRL 232
+V
Sbjct: 68 YVES 71
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 67.0 bits (164), Expect = 3e-14
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 240
A+A+ A + L F D+I VL+ +WW+G GWFP ++V++ E
Sbjct: 13 AQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGSESGP 71
Query: 241 ED 242
Sbjct: 72 SS 73
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 66.5 bits (163), Expect = 4e-14
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A++D ELGF+ GD+I + + +D +W+ G SG+FP +V +
Sbjct: 10 CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEI 61
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 66.0 bits (162), Expect = 4e-14
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
+A++D+ A +EL F+ GD I V WW G GW P+ +V+
Sbjct: 6 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQD 57
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 66.5 bits (163), Expect = 4e-14
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 235
EA++ + A + E+L F+ GD+I VL ++ +W G G FP FV +
Sbjct: 8 VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSAT 62
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 66.1 bits (162), Expect = 4e-14
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A A +D+V A EL F+ G + + DWW G G P ++ +
Sbjct: 9 AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 66.0 bits (162), Expect = 4e-14
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
+V A +D+ A +EL G++I + D WW G G FP FVR
Sbjct: 1 MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVRE 55
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 66.6 bits (163), Expect = 4e-14
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 176 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLR 233
D A++D+ A ++EL GD+I V + DWW+G+ +G+ G+FP+ V
Sbjct: 4 DTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQ-EGYFPANHVASE 62
Query: 234 VSQED 238
++
Sbjct: 63 TLYQE 67
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 66.6 bits (163), Expect = 4e-14
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 237
A A++D+ A +E+ F D+I ++ +D WW G G FP+ +V LR S
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSGP 76
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 66.5 bits (163), Expect = 4e-14
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A++D+ A +EL AGD++EV+ + WW R G+ P +++
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEK 62
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 66.6 bits (163), Expect = 4e-14
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
V + + +E+GF G +EV+ WW+ GW P+++++
Sbjct: 13 TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 66.6 bits (163), Expect = 4e-14
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
AEA++D EL F+AGDVI +L +++DW GT A+G FP +FV++
Sbjct: 21 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 72
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 66.7 bits (163), Expect = 5e-14
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-----RGEASGWFPSAFVRL 232
+A+ +VA +E+L G +I +L WW G + GWFP++ V+L
Sbjct: 9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 66.1 bits (162), Expect = 5e-14
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRL 232
+A++D+ A ++EL F G +I + WW G +FPS +V
Sbjct: 8 RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVED 62
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 66.5 bits (163), Expect = 5e-14
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
+A++D ELGFR GD+I + + +D +W+ G SG+FP ++V++
Sbjct: 16 CKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQV 67
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 66.6 bits (163), Expect = 5e-14
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 237
++ +A ++ +EL GD+I V + WW GT +GWFPS +VR S E
Sbjct: 10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSE 69
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 65.7 bits (161), Expect = 6e-14
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
++ A ++ +EL F GDVI V + WW GT +GWFPS +VR
Sbjct: 6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 65.7 bits (161), Expect = 6e-14
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 233
A A++D+ A +E+ F D+I ++ +D WW G G FP+ +V LR
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 65.7 bits (161), Expect = 7e-14
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
++D ELGF+ GD+I + + +D +W+ G SG+FP +V +
Sbjct: 6 CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 66.3 bits (162), Expect = 7e-14
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---------GWFPSAFV 230
A++D+ A AE+L FRAGD ++VLDT WW E G+ PS +V
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV 68
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 65.7 bits (161), Expect = 8e-14
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 232
A A ++ E+ FR G+ I +L +D +W+ G G FP +V +
Sbjct: 10 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 63
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 65.3 bits (160), Expect = 9e-14
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
+ + ++ +EL + GD+IEV+ ++ WW G +G FPS F++
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 61
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 64.9 bits (159), Expect = 9e-14
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
A ++ +EL F GDVI V + WW GT +GWFPS +VR
Sbjct: 7 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 66.4 bits (162), Expect = 9e-14
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 174 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGT-RGEASGWFPSA 228
ED V+A A +D VA+ EE+ FRAGD++ + R W + G+ +G P+
Sbjct: 13 GEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPAN 72
Query: 229 FVRL 232
+V++
Sbjct: 73 YVKI 76
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 65.4 bits (160), Expect = 1e-13
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 179 VLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ 236
+ A + V A + L G++++V W G G FP VRL + Q
Sbjct: 7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRL-LDQ 65
Query: 237 ED 238
++
Sbjct: 66 QN 67
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 65.4 bits (160), Expect = 1e-13
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 177 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS 235
F +A++D+ A +EL F +I+ ++ + WW G G+ WFPS +V V+
Sbjct: 5 FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64
Query: 236 QEDTVED 242
E D
Sbjct: 65 PEGIHRD 71
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 65.9 bits (161), Expect = 1e-13
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 170 PIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAF 229
P D + A ++++A +EL G + V++ WW G+ GWFPS +
Sbjct: 9 PGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNY 68
Query: 230 VRLRVSQEDTVEDCLAALASGGS 252
V E+ + SG S
Sbjct: 69 V-----TEEGDSPLGDHVGSGPS 86
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 65.3 bits (160), Expect = 1e-13
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A A +D A +EL + GD++ + +D++W+ G G FP ++ L
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIEL 61
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 65.7 bits (160), Expect = 1e-13
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 172 GMDEDFVVLAEAVWDHV-AMEAEELGFRAGDVIEVLDTLDRDWWWG------TRGEASGW 224
G+ + A+ D + L RAGDVI VL+ W G + G+
Sbjct: 12 GLVPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGY 71
Query: 225 FPSAFVRL 232
FP V +
Sbjct: 72 FPPGIVEV 79
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 65.0 bits (159), Expect = 1e-13
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 179 VLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ 236
V A+A+ V A + L GD+++V W G G FP V++ Q
Sbjct: 2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 61
Query: 237 EDTVED 242
+
Sbjct: 62 NPDENE 67
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 65.4 bits (160), Expect = 1e-13
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQE 237
A++D+ A ++L F G+ ++L++ + DWW +G+ PS ++ +
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLD 66
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 71.2 bits (173), Expect = 2e-13
Identities = 46/250 (18%), Positives = 87/250 (34%), Gaps = 22/250 (8%)
Query: 72 EMVGRGTGAELQSRGLPRRRGQMVRRTHSDLGGQRLFHWDVCNSYRKMISSPSPVKTRME 131
E G + + + LP ++ ++ R N+Y K + S E
Sbjct: 73 ERFGPDSKSSALAXTLPTLPAKVYVGVKQEIAEMR---IPALNAYMKSLLSLPVWVLMDE 129
Query: 132 NCADVQTRTKRIRPHHALRRSVSQPLGINELSPLLRRKPIGMDEDFVVLAEAVWDHVAME 191
+ ++ +P + + +D AEA++D
Sbjct: 130 DVRIFFYQSPYDSEQVPQALRRLRPR--TRKVKSVSPQGNSVDRMAAPRAEALFDFTGNS 187
Query: 192 AEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL--RVSQEDTVEDCLAALAS 249
EL F+AGDVI +L +++DW GT A+G FP +FV++ +ED + L
Sbjct: 188 KLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWLRCYYY 247
Query: 250 GGSKTLRRRTSIS--------------LLSNDQVRSRVVRELINTERDFVKVLHDVSEG- 294
+ + + ++ L + R + + E D V++L D
Sbjct: 248 EDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVAL 307
Query: 295 YLAECRRRND 304
+ + R
Sbjct: 308 MVRQARGLPS 317
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 65.1 bits (159), Expect = 2e-13
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRL 232
A++ + +L F+AGD I V+ D DWW G +G FP+ +V +
Sbjct: 20 VTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTM 73
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 64.3 bits (157), Expect = 2e-13
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-----RGEASGWFPSAFVRLR 233
A + + + ++L F I V D +W++G G FP +FV ++
Sbjct: 12 AQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ 67
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 64.7 bits (158), Expect = 2e-13
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 172 GMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR----DWWWGTRGEASGWFPS 227
G + + + AV+ A EL A +++L+ D +WW G+ PS
Sbjct: 7 GSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPS 66
Query: 228 AFVR 231
++R
Sbjct: 67 NYIR 70
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 64.8 bits (158), Expect = 3e-13
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 167 RRKPIGMDEDFVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGW 224
P+ ++ V A+A+ V A + L GD+++V W G G
Sbjct: 5 SSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGL 64
Query: 225 FPSAFVRLRVSQE 237
FP V++ Q
Sbjct: 65 FPFTHVKIFDPQN 77
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 63.8 bits (156), Expect = 3e-13
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 232
A A ++ E+ FR G+ I +L +D +W+ G G FP +V +
Sbjct: 9 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 62
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 64.2 bits (157), Expect = 3e-13
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A+A+ ++ +L F GDVI + LD +W+ G SG FP++ V +
Sbjct: 10 AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 67.7 bits (165), Expect = 3e-13
Identities = 21/115 (18%), Positives = 42/115 (36%)
Query: 161 ELSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 220
E A+ + A+E +E+ G+ +EV+ L WW + +
Sbjct: 64 EPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDD 123
Query: 221 ASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVR 275
+G+FPS +++ + + A ++R SI S ++ R
Sbjct: 124 VTGYFPSMYLQKSGQDVSQAQRQIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYR 178
Score = 66.6 bits (162), Expect = 9e-13
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 239
A+ D+ E+ GDV+EV++ + WW+ GW P++F+ S ++T
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDET 72
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 63.9 bits (156), Expect = 3e-13
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 174 DEDFVVLAEAVWDHVAMEAE--ELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAF 229
D++F+ A+A++ + A + + E+ F ++++V D + WW GE +G PS +
Sbjct: 1 DDNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGE-TGIIPSNY 58
Query: 230 VRLRVSQEDT 239
V+L E+
Sbjct: 59 VQLIDGPEEM 68
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 63.3 bits (155), Expect = 3e-13
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRL 232
A A++ E+ +L FR GDVI +L D DWW G G FP+ +V L
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 63.9 bits (156), Expect = 4e-13
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 239
A A +D A +EL F+ GD+++VL + D++W+ G+ P ++ ++ E
Sbjct: 12 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFI 71
Query: 240 VED 242
V D
Sbjct: 72 VTD 74
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 63.8 bits (156), Expect = 4e-13
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A +D A +EL + GD++ + +D++W G G FP+ +V +
Sbjct: 4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 63.5 bits (155), Expect = 4e-13
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 181 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRD-WWWGT--RGEASGWFPSAFVRL 232
+ ++ H A + L F GDVI +L ++D W +G +A GWFPS++ +L
Sbjct: 9 VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKL 64
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 63.4 bits (155), Expect = 4e-13
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 232
A++D+ A + +E+ FR GD I + +D W +GT R +G P+ ++
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 64.0 bits (156), Expect = 5e-13
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT---RGEASGWFPSAFVRLRVSQE 237
A A + EL FR G+ I ++ ++ +W+ G G G FP+++V +VS+E
Sbjct: 20 AVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGR-QGIFPASYV--QVSRE 76
Query: 238 DTVEDCLAALASGG 251
+ C + S G
Sbjct: 77 PRLRLCDDSGPSSG 90
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 63.9 bits (156), Expect = 5e-13
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWWGTRGEASGWFPSAFVRL 232
A ++D+ A + EL A +VI V +D DW G RG G P ++ L
Sbjct: 20 ARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLEL 73
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 63.9 bits (156), Expect = 5e-13
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSAFVRL 232
A A+ D+ + L F+ D+I + + W+ G+ G FP V +
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWF--MGQLNGKEGSFPVDHVEI 65
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 63.0 bits (154), Expect = 5e-13
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 174 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFV 230
D + V A++D VA L G+ + VL W GW PSA++
Sbjct: 4 DPNLFV---ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYI 58
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 62.9 bits (154), Expect = 5e-13
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSAFVR 231
EA++ + A +E+ GD+I V+ D W GE G FP+++ +
Sbjct: 4 EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWT--YGECDGLKGLFPTSYCK 54
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 63.1 bits (154), Expect = 5e-13
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--------GTRGEASGWFPSAFV 230
L A++D+ E+ + GD++ +L++ ++DWW G E G+ P+A+V
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 64.0 bits (156), Expect = 5e-13
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 153 VSQPLGINELSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD 212
+ P + S + G ++ VV A++D+ A+ E+L F+ GD + VL+ +
Sbjct: 3 LGSPGPNSHNSNTPGIREAGSEDIIVV---ALYDYEAIHHEDLSFQKGDQMVVLEE-SGE 58
Query: 213 WWWG--TRGEASGWFPSAFVRLRVSQE 237
WW G+ PS +V S E
Sbjct: 59 WWKARSLATRKEGYIPSNYVARVDSLE 85
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 63.1 bits (154), Expect = 6e-13
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 183 AVWDHVAM-EAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQEDT 239
A+ + + + +E+ F GD+ V + L+ W W T R + G V VS +
Sbjct: 12 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE-VSGPSS 70
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 63.0 bits (154), Expect = 6e-13
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFVRL 232
+V +D+ A+ +EL R G++I + L + W G G FP FV+
Sbjct: 1 MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKE 56
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 63.1 bits (154), Expect = 6e-13
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 230
A++D+ A+ ++L F G+ ++L++ + DWW +G+ PS +V
Sbjct: 20 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 69
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 63.6 bits (155), Expect = 6e-13
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRLRVSQE 237
A++D+ A +L F G+ ++L+ DWW +G+ PS +V S +
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQ 67
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 62.6 bits (153), Expect = 7e-13
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVR 231
+A++D+ A +EL F +I+ ++ D WW G G+ WFPS +V
Sbjct: 6 VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 57
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 62.7 bits (153), Expect = 8e-13
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 162 LSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWG--TR 218
+S + P G + A ++ ++L F GDV+ ++ T D +W+
Sbjct: 1 MSAIQASWPSGTE------CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKV 54
Query: 219 GEASGWFPSAFVRLR 233
G G P+ +V+ R
Sbjct: 55 GR-EGIIPANYVQKR 68
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 62.2 bits (152), Expect = 9e-13
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 230
A++D + E+L F+ GD++ + D + WW + G+ G P +V
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGK-RGMIPVPYV 54
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 62.6 bits (153), Expect = 1e-12
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 231
A+ + A EEL + G+ I VL W G +G FPS +V
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 62.3 bits (152), Expect = 1e-12
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 238
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L E
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEH 64
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 61.8 bits (151), Expect = 1e-12
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GT--RGEASGWFPSAFVRL 232
A++D+ E +EL F+AGD + L D W G G+ G +P+ +V
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQ-LGLYPANYVEA 59
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 62.3 bits (152), Expect = 1e-12
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 232
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 61.9 bits (151), Expect = 1e-12
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 230
A++D + E+L F+ GD++ + D + WW + G+ G P +V
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGK-RGMIPVPYV 56
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 61.9 bits (151), Expect = 2e-12
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 232
++ + +EL FR G++I ++ +T + WW G G FP F
Sbjct: 9 CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 62.0 bits (151), Expect = 2e-12
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW------GTRGEASGWFPSAFV 230
+WD + EEL FRAGDV V + WWW A G+ P ++
Sbjct: 15 GLWDFKSRTDEELSFRAGDVFHVARKEE-QWWWATLLDEAGGAVAQGYVPHNYL 67
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 61.9 bits (151), Expect = 2e-12
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 232
A A++D EL GD++ + + W G +G P FV
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY 61
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 61.5 bits (150), Expect = 2e-12
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEASGWFPSAFV 230
M + A++D++ M A +L R GD +L+ + WW + G+ PS +V
Sbjct: 3 MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 61.5 bits (150), Expect = 2e-12
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRL 232
+ VV A++D A EA +L G +L+ D WW G G+ PS +V
Sbjct: 2 SEIVV---AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGS-EGYIPSNYVTG 57
Query: 233 RVSQE 237
+ S
Sbjct: 58 KKSNN 62
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 61.5 bits (150), Expect = 2e-12
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFVRL 232
+LA A++D+ ++EL F GD++ +L+ + WW G P+ +++
Sbjct: 8 LLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 61.6 bits (150), Expect = 3e-12
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 238
+ ++ + A +EL + GD++ ++ D +D WW G G FP FV+L +
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFE 71
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 61.6 bits (150), Expect = 3e-12
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 162 LSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRG 219
L P E L A++D+ + +EL R + +LD+ + WW G
Sbjct: 4 LPPTPEDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNG 63
Query: 220 EASGWFPSAFV 230
G+ PS+++
Sbjct: 64 H-EGYAPSSYL 73
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 61.1 bits (149), Expect = 3e-12
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFV 230
AV D A + +L F+ G+++ V++ WW + G P ++
Sbjct: 15 AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYL 63
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 61.6 bits (150), Expect = 3e-12
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVRLR 233
+H + EL FR GDV+ +L+ + W+ + S G + +R R
Sbjct: 20 CITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER 75
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 61.2 bits (149), Expect = 4e-12
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 181 AEAVWDHVAME-AEELGFRAGDVIEVLDTLDRD-WWWGT--RGEASGWFPSAFVRL 232
+ ++ H A L F GDV+ +L ++D W +G +A GWFPS++ +L
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 60.7 bits (148), Expect = 4e-12
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGE--ASGWFPSAFVRLRVSQE 237
+D +A +EL ++GD + +L D +DWW + SG P+ F+ ++
Sbjct: 9 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKK 68
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 60.3 bits (147), Expect = 4e-12
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 180 LAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 231
+ EA +D + EL + GDVI + W G G GW P+A+++
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 61.2 bits (149), Expect = 4e-12
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 168 RKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEASGWFP 226
R+P+ E+ VV+A ++D+ + +EL R + +LD+ + WW R G+ P
Sbjct: 11 RRPLWEPEETVVIA--LYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVP 68
Query: 227 SAFVRLRVSQEDTVED 242
S+++ + +
Sbjct: 69 SSYLVEKSPNNLETYE 84
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 60.3 bits (147), Expect = 5e-12
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 232
A A++D EL GD++ + + W G +G P FV
Sbjct: 4 AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY 57
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 62.1 bits (151), Expect = 5e-12
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 174 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFVR 231
V A++D+ A E+L F+ G+ ++++ + DWW SG+ PS +V
Sbjct: 26 GVTIFV---ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVV 82
Query: 232 LRVSQE 237
S +
Sbjct: 83 PADSIQ 88
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 61.3 bits (149), Expect = 5e-12
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 170 PIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD--WWWG--TRGEASGWF 225
G + + + ++ ++ EEL F G+ +EV++ + D WW RG+ G
Sbjct: 9 SNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ-VGLV 67
Query: 226 PSAFVRLRVSQE 237
P +V +
Sbjct: 68 PKNYVVVLSDGP 79
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 61.0 bits (148), Expect = 6e-12
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRLRVS 235
A++ A +E+ F +GD+I+V + W +G+ GWFP +V S
Sbjct: 5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS 64
Query: 236 QED 238
E+
Sbjct: 65 SEN 67
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 60.0 bits (146), Expect = 9e-12
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQEDTV 240
A++ V +EL D + V + W+ R A G FP+ + + + +
Sbjct: 11 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEPEHM 70
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 60.0 bits (146), Expect = 9e-12
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWWGTRGEASGWFPSAFVR 231
A A ++ A + EL R GDV+ + D+ WW G GWFPS +V
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 60.1 bits (146), Expect = 1e-11
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 230
M++ VV A++D+V+ ++L F+ GD + VL+ +WW G+ PS +V
Sbjct: 1 MEDIIVV---ALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYV 56
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 59.6 bits (145), Expect = 1e-11
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 230
A++ + +EL R GD ++V+ D W+ G R + G FP +V
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 59.8 bits (145), Expect = 1e-11
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW----GTRGEASGWFPSAFVR 231
++ D+ E E GF+ G +EVL+ WW+ GW PS ++
Sbjct: 15 SIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLE 66
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 59.7 bits (145), Expect = 1e-11
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 177 FVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 234
F A D + + L + GD+I+++ W G G F +V +
Sbjct: 8 FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLS 67
Query: 235 SQEDT 239
S +
Sbjct: 68 SGPSS 72
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 59.3 bits (144), Expect = 1e-11
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 181 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWW-GT--RGEASGWFPSAFVRL 232
+A++ H A + L F+ GD+I +L RD W G + + GWFP ++ R+
Sbjct: 10 VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 59.2 bits (144), Expect = 1e-11
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 230
+ ++D A A EL +V+EVL+ + W +R +G+ P +
Sbjct: 9 YVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNIL 59
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 59.3 bits (144), Expect = 2e-11
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 181 AEAVWDHVA-MEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 230
EA +D + EL + GD++ + W G GW P+A++
Sbjct: 5 FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 59.4 bits (144), Expect = 2e-11
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 170 PIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPS 227
P G+D DF+ + D+ + + FR G+ + V+ + WW + P
Sbjct: 12 PEGLDSDFLA---VLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPG 67
Query: 228 AFV 230
V
Sbjct: 68 ICV 70
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 58.8 bits (143), Expect = 2e-11
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD--WWWG--TRGEASGWFPSAFVRL 232
+ ++ ++ EEL F G+ +EV++ + D WW RG+ G P +V +
Sbjct: 9 VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ-VGLVPKNYVVV 63
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 58.8 bits (143), Expect = 2e-11
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 174 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 230
D VV A++ + + ++L F+ G+ ++VL+ +WW + G+ PS +V
Sbjct: 6 QGDIVV---ALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNYV 60
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 59.3 bits (144), Expect = 2e-11
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 170 PIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW---GTRGEASGWFP 226
G ++ + + V+ + A + +EL +V+EV++ D + W G+ G+ P
Sbjct: 5 SSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQ-VGYVP 63
Query: 227 SAFVRLRVSQE 237
+++ S
Sbjct: 64 EKYLQFPTSSG 74
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 58.3 bits (142), Expect = 2e-11
Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSAFVRL 232
+ ++ +V + +E+ GD I ++ W + +G P+ ++R+
Sbjct: 4 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 58.9 bits (143), Expect = 2e-11
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 181 AEAVWDHVAMEA-------EELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFV 230
A++D+ E+ EL F GD+I V +D D ++ G G PS F+
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFL 67
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 58.9 bits (143), Expect = 2e-11
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFVRL 232
V +A++D+ +EL F G +I +L+ ++D +W G G FPS V
Sbjct: 8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEE 65
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 57.9 bits (141), Expect = 3e-11
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGE--ASGWFPSAFVRL 232
+ +D +A +EL ++GD + +L D +DWW + SG P+ F+
Sbjct: 2 MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 58.0 bits (141), Expect = 3e-11
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 231
A++ V +EL D + V + W+ R A G FP+ +
Sbjct: 8 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 58
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 58.1 bits (141), Expect = 3e-11
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 230
+D A + EL + DV+EVLD R WW G+ G+ P +
Sbjct: 10 WVLCNYDFQARNSSELSVKQRDVLEVLDD-SRKWWKVRDPAGQ-EGYVPYNIL 60
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 57.9 bits (140), Expect = 4e-11
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 231
+ A + +VA +EL G + V++ WW G+ GWFPS +V
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVL 54
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 60.5 bits (146), Expect = 4e-11
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWGTRGEASGWFPSAFVRLRVSQ 236
A+A +D A + EL + GD+I++L+ + WW G GWFPS +V S+
Sbjct: 5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSE 64
Query: 237 EDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELI 278
+ + L +T + + V + ++
Sbjct: 65 YLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVF 106
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 58.7 bits (142), Expect = 4e-11
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 160 NELSPLLRRKPIGMDEDFVVL----AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 215
+ P P + FV L + + EEL F+ G +I+V D D ++
Sbjct: 6 SGTDPGAEELPARI---FVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFY 62
Query: 216 GTRGEA---SGWFPSAFV 230
RGE G P V
Sbjct: 63 --RGETCARLGLIPCNMV 78
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 57.8 bits (140), Expect = 5e-11
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 183 AVWDHVAM-EAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 231
A+ + + + +E+ F GD+ V + L+ W W T R + G V
Sbjct: 10 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 57.3 bits (139), Expect = 6e-11
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFV 230
+ ++ V+ A+ + +LGF G+ + +L+ +WW G+ P FV
Sbjct: 4 LQDNLVI---ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFV 59
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 56.9 bits (138), Expect = 9e-11
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRLRVSQE 237
+ +++ A EL G+ +EVLD + WW G SG+ PS +
Sbjct: 10 MQVLYEFEARNPRELTVVQGEKLEVLDH-SKRWWLVKNEAGR-SGYIPSNILEPLSGPS 66
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 58.4 bits (141), Expect = 1e-10
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSAFVRLR 233
+ A +++ A +EL G+ + + D +W+ R G P ++VR+
Sbjct: 4 LFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII 61
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 58.2 bits (140), Expect = 1e-10
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 170 PIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL-----DTLDRDWWWGTRGEA--- 221
+ + F+ +A D+ A + +EL +AGDV+ V+ + D W G +
Sbjct: 36 RLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQ 95
Query: 222 -------SGWFPSAFVR 231
G FP F
Sbjct: 96 HKELEKCRGVFPENFTE 112
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 56.5 bits (137), Expect = 1e-10
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 178 VVLAEAVWDHVAMEAEELGFRAGDVIE-VLDTLDRDWWWGTRGEASGWFPSAFVRL 232
A+A++ A EL F AG V + V + + W GT +G P +V
Sbjct: 10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 57.5 bits (139), Expect = 2e-10
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT---RGEASGWFPSAFVRLRV--S 235
A ++D A +A+EL G+ + + + +W+ R G P FV + +
Sbjct: 8 AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIAT 67
Query: 236 QEDTVEDCLAALASGG 251
T D + + S
Sbjct: 68 GYATGNDVIEDIKSVN 83
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 56.8 bits (137), Expect = 2e-10
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLD-----TLDRDWWWGT--RGEASGWFPSAFV 230
+ AV+D+ A EEL R GD ++VL + D WW G G G FPS +V
Sbjct: 31 VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGR-VGVFPSNYV 87
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 56.2 bits (136), Expect = 2e-10
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFVR 231
E A +A+E+ + DV+ VL D W +G R GE +GWFP F R
Sbjct: 20 VEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDGE-TGWFPEDFAR 71
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 61.1 bits (147), Expect = 3e-10
Identities = 20/121 (16%), Positives = 31/121 (25%), Gaps = 1/121 (0%)
Query: 123 PSP-VKTRMENCADVQTRTKRIRPHHALRRSVSQPLGINELSPLLRRKPIGMDEDFVVLA 181
P P V+ A V + + G + P +
Sbjct: 183 PVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARV 242
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVE 241
A + L G++++V W G G FP VRL Q +
Sbjct: 243 IQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNPEED 302
Query: 242 D 242
Sbjct: 303 F 303
Score = 56.1 bits (134), Expect = 1e-08
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 1/110 (0%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVRLRVSQEDTV 240
A++D + E+L F+ GD++ + D + WW E G P +V +V
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASV 197
Query: 241 EDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHD 290
+ G + V + + V
Sbjct: 198 SALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRV 247
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 57.9 bits (139), Expect = 6e-10
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRL 232
+ +L F G+ +E+L ++DWW G +G P+ +V++
Sbjct: 121 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGT-TGLVPANYVQI 173
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 54.7 bits (132), Expect = 6e-10
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 193 EELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFV 230
L RAGDV+ V +D ++ G G G P+ +
Sbjct: 29 GRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLL 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 7e-10
Identities = 90/520 (17%), Positives = 155/520 (29%), Gaps = 176/520 (33%)
Query: 144 RP----HHALRRSVSQPLGINELSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAE-----E 194
RP H +L + P ++ L+ E F + + A + E E
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQ-------EQFNKILPEPTEGFAADDEPTTPAE 59
Query: 195 L-----GF--------RAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR---------- 231
L G+ + G +VL+ + F + ++
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE------------FENCYLEGNDIHALAAK 107
Query: 232 LRVSQEDTVEDC-------LAALASGGSKTLRRRTSISLLSN-DQVRSRVV--------- 274
L + T+ + A ++ S +L + +++V
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-ALFRAVGEGNAQLVAIFGGQGNT 166
Query: 275 -------RELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSS 327
R+L T V L S L+E R + + +F +IL
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR-----TTLDAEKVFTQGLNIL----E 217
Query: 328 FLEDLETKLDWD----APYKSC--IGETFLKHKSGFRMYSEYCNSHPMAIATLQELYQ-- 379
+LE+ D D P SC IG L H Y L+ +
Sbjct: 218 WLENPSNTPDKDYLLSIPI-SCPLIGVIQLAH------YVVTAKLLGFTPGELRSYLKGA 270
Query: 380 --H-------------NNYSKFFEACRL-MRGLIEIPLDGYLLTPVQRICKYPLQLAELL 423
H +++ FF + R + L I + Y P + P L + L
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP--PSILEDSL 328
Query: 424 K--------------YTKTDHPDYVKITEA-LEAMRDVAM-LINERKRRM-----ESLEK 462
+ T+ DYV T + L A + V + L+N K + +SL
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 463 LAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFL-----FDH------- 510
L ++ + G D S++ ++ + FL F H
Sbjct: 389 LNLTLRKAKAPSGLD----QSRIPFSERKLKFS--------NRFLPVASPF-HSHLLVPA 435
Query: 511 -QLVYCKRDILKRNTHVYKARLNI---DTSQIINLPDGKD 546
L+ +D++K N + I DT DG D
Sbjct: 436 SDLI--NKDLVKNNVSFNAKDIQIPVYDTF------DGSD 467
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 58.2 bits (140), Expect = 9e-10
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 162 LSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 221
+ + + I +A++D E ELGFR GD I V+D D +WW G
Sbjct: 142 RNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQ 201
Query: 222 SGWFPSAFV 230
+G FP +V
Sbjct: 202 TGMFPRNYV 210
Score = 53.1 bits (127), Expect = 4e-08
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 14/102 (13%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFVRLRVSQE---- 237
A +D A +EL F+ GD+++VL+ W+ G+ P ++ ++
Sbjct: 5 AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGK 64
Query: 238 ---DTVEDCLAALASGGSKTLRRRTS------ISLLSNDQVR 270
E+ L+ G+ +R S +S+ + V+
Sbjct: 65 IPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQ 106
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 54.8 bits (132), Expect = 9e-10
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 158 GINELSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG- 216
N L K + M E+ +V+A WD+ A + +EL + + + +LD + WW
Sbjct: 13 DYNSLKKGSLVKNLHMTEEVIVIA--KWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVR 69
Query: 217 -TRGEASGWFPSAFVR 231
+G+ PS +V
Sbjct: 70 NAANR-TGYVPSNYVE 84
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 54.9 bits (132), Expect = 1e-09
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 183 AVWDHVAMEA------EELGFRAGDVIEVLDTLDRDWWWGTRGEA----SGWFPSAFV 230
A + + + EL AG + V +D D ++ GE G PS FV
Sbjct: 22 ARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFY--EGELLDGQRGLVPSNFV 77
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 59.1 bits (142), Expect = 1e-09
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVRLRVSQ 236
+ +L F G+ +E+L ++DWW +G P+ +V++++
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEF 206
Score = 55.6 bits (133), Expect = 2e-08
Identities = 8/57 (14%), Positives = 16/57 (28%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 237
A + +L + G + V + + G P ++R E
Sbjct: 252 VTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAVSE 308
Score = 32.5 bits (73), Expect = 0.34
Identities = 9/53 (16%), Positives = 17/53 (32%)
Query: 191 EAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDC 243
EA+E +IE + + A+ FP L + + +
Sbjct: 84 EADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEA 136
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 53.8 bits (130), Expect = 1e-09
Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFVRL 232
A++ + G+ + +++ D W R + G+ P++++R+
Sbjct: 10 CVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRV 63
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 53.4 bits (129), Expect = 1e-09
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 230
M E+ +V+A WD+ A + +EL + + + +LD + WW +G+ PS +V
Sbjct: 1 MTEEVIVIA--KWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANR-TGYVPSNYV 56
Query: 231 RLRVSQE 237
++
Sbjct: 57 ERKLEHH 63
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 55.1 bits (132), Expect = 1e-09
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVRLR 233
A+++ A +L + GDV+ + +T DW+ G + G FP +F+ ++
Sbjct: 62 GVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIK 116
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 53.5 bits (129), Expect = 2e-09
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 174 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVR 231
+E VV A +D+VA + +EL + + + +LD + WW + + +G+ PS +V
Sbjct: 6 EEVVVV---AKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNK-TGFVPSNYVE 60
Query: 232 LRVSQE 237
+ S
Sbjct: 61 RKNSAR 66
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 52.6 bits (127), Expect = 2e-09
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRLRVSQE 237
A++ +D VA + EL DV+E+LD R WW G+ SG+ P+ + + + E
Sbjct: 3 YAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGD-SGFVPNNILDIMRTPE 60
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 52.7 bits (126), Expect = 4e-09
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 191 EAEELGFRAGDVIEVLDT-LDRDWWWG--TRGEASGWFPSAFVRLRV 234
L GD++E+ + +WW G T GWFP V V
Sbjct: 31 FGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV 77
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 52.9 bits (127), Expect = 5e-09
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGT--RGEASGWFPSAFVRLRVSQ 236
++ + +EL GD I + + W +GT SG P ++ + +
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYIT-KADE 79
Query: 237 EDT 239
T
Sbjct: 80 CST 82
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 51.9 bits (125), Expect = 7e-09
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 181 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWW---GTRGEASGWFPSAFVRL 232
A ++D A EL G++I V + W +GE G P+ +V +
Sbjct: 12 ARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGE-QGLVPTDYVEI 66
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 52.1 bits (125), Expect = 9e-09
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 181 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWG-TRGEASGWFPSAFVRL 232
A A++D V E E+ + GD++ +L D DWW T+ G+ P ++ +
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 51.6 bits (124), Expect = 9e-09
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 173 MDEDFVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWG-TRGEASGWF 225
+D + A A++D V E E+ + GD++ +L D DWW T+ G+
Sbjct: 9 IDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYI 68
Query: 226 PSAFVRL 232
P ++ +
Sbjct: 69 PYNYIEI 75
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 51.3 bits (123), Expect = 9e-09
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 216
A++D+ E+ + GD++ +L++ ++DWW
Sbjct: 24 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 59
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 51.2 bits (123), Expect = 1e-08
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 181 AEAVWDHVAMEAE-ELGFRAGDVIEVLD-----TLDRDWWWG-TRGEASGWFPSAFVRL 232
A A++D V E E+ + GD++ +L D DWW T+ G+ P ++ +
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 56.2 bits (134), Expect = 1e-08
Identities = 13/58 (22%), Positives = 19/58 (32%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 238
A A + L GD+++V W G G FP V++ Q
Sbjct: 242 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP 299
Score = 54.2 bits (129), Expect = 5e-08
Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 4/144 (2%)
Query: 185 WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQEDTVEDC 243
+D +AE+L F+ G+++ +++ + WW + G P +V V +
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHG 191
Query: 244 LAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRN 303
S G + V + + A +R
Sbjct: 192 NRNSNSYGIPEPAHAYAQ---PQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVP 248
Query: 304 DMFSPEQIQTIFGNLEDILAFQSS 327
+ + G++ + +
Sbjct: 249 CAYDKTALALEVGDIVKVTRMNIN 272
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 56.3 bits (136), Expect = 2e-08
Identities = 37/204 (18%), Positives = 62/204 (30%), Gaps = 13/204 (6%)
Query: 134 ADVQTRTKRIRPHHALRRSVSQPLGINELSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAE 193
A + + L P D + V A++D VA
Sbjct: 2 AMDPSEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFV---ALYDFVASGDN 58
Query: 194 ELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFVRLRVSQEDTVEDCLAALASGGS 252
L G+ + VL W + + GW PS ++ S E
Sbjct: 59 TLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNSLEK--HSWY-------H 109
Query: 253 KTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQ 312
+ R + LLS+ S +VRE ++ L Y +D +
Sbjct: 110 GPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLRYEGRVYHYRINTASDGKLYVSSE 169
Query: 313 TIFGNLEDILAFQSSFLEDLETKL 336
+ F L +++ S+ + L T L
Sbjct: 170 SRFNTLAELVHHHSTVADGLITTL 193
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 54.5 bits (130), Expect = 2e-08
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 185 WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVRLRVSQEDTVEDC 243
+D + E+L F+ GD++ + D + WW E G P +V +V
Sbjct: 143 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSAL 202
Query: 244 LAALASGGS 252
+ G
Sbjct: 203 IGGNQEGSH 211
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 50.4 bits (120), Expect = 5e-08
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 175 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL---DRDWWWGT--------RGEASG 223
+ +A A+ D++A + L G V+ V L R +W G+ G
Sbjct: 19 SHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLG 78
Query: 224 WFPSAFVR-LRVSQEDTVE 241
+FPS+ VR + + V+
Sbjct: 79 YFPSSIVREDQTLKPGKVD 97
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 49.2 bits (117), Expect = 5e-08
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 191 EAEELGFRAGDVIEVLDT-LDRDWWWG--TRGEASGWFPSAFVR 231
L GD++E+ + +WW G T GWFP V
Sbjct: 23 FGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 54.0 bits (128), Expect = 9e-08
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS----GWFPSAFVRL 232
A++D+ E +EL F+AGD + ++ D W +G G +P+ +V
Sbjct: 432 RALYDYEGQEHDELSFKAGDELTKMEDEDEQGWC--KGRLDNGQVGLYPANYVEA 484
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 50.9 bits (120), Expect = 3e-07
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 15/74 (20%)
Query: 173 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD-----WWWGTRGE------- 220
+ F+ +A D+ A + +EL +AGDV+ V+ + + W G +
Sbjct: 137 LPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKK 196
Query: 221 ---ASGWFPSAFVR 231
G FP F
Sbjct: 197 LEKCRGVFPENFTE 210
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 51.0 bits (122), Expect = 7e-07
Identities = 34/210 (16%), Positives = 70/210 (33%), Gaps = 20/210 (9%)
Query: 137 QTRTKRIRPHHALRRSVSQPLGINELSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAEELG 196
G N + + G V A++D+ + +L
Sbjct: 44 DGHRGPSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLS 103
Query: 197 FRAGDVIEVLDTLDRDWWW--GTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKT 254
F+ G+ +++++ + DWW +G+ PS +V S +
Sbjct: 104 FKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYF---------GK 154
Query: 255 LRRRTSISLL--SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECR------RRNDMF 306
+ RR S LL + + + +VRE T+ + + D + + F
Sbjct: 155 ITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGF 214
Query: 307 SPEQIQTIFGNLEDILAFQSSFLEDLETKL 336
F +L+ ++A+ S + L +L
Sbjct: 215 YITSRTQ-FNSLQQLVAYYSKHADGLCHRL 243
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 50.1 bits (120), Expect = 1e-06
Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 20/170 (11%)
Query: 177 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS--GWFPSAFVRLRV 234
V A++D+ + +L F+ G+ +++++ + DWW G+ PS +V
Sbjct: 1 MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60
Query: 235 SQEDTVEDCLAALASGGSKTLRRRTSISLL--SNDQVRSRVVRELINTERDFVKVLHDVS 292
S + + RR S LL + + + +VRE T+ + + D
Sbjct: 61 SIQAEEWYF---------GKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFD 111
Query: 293 EGYLAECR------RRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKL 336
+ + F F +L+ ++A+ S + L +L
Sbjct: 112 NAKGLNVKHYKIRKLDSGGFYITSRTQ-FNSLQQLVAYYSKHADGLCHRL 160
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 50.0 bits (120), Expect = 2e-06
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFVRLRVSQE 237
A ++ ++L F GDV+ ++ W+ + + G P+ +V+ R +
Sbjct: 16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK 72
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 45.4 bits (107), Expect = 2e-06
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 180 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRGEASGWFPSAFVRL 232
L +A + A + ++ GD++ V+ D ++ W G G+ S+F++
Sbjct: 19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKP 75
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 46.2 bits (109), Expect = 7e-06
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 181 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVRLRVSQE 237
A+++ A +L + GDV+ + +T DW+ G + G FP +F+ ++
Sbjct: 20 GVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIKEVTV 78
Query: 238 DTVEDC 243
+ +
Sbjct: 79 EKRRNT 84
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 46.8 bits (110), Expect = 2e-05
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 182 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQED 238
A++ H A+E+ GD+I V + G + +G +PS VR ++
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVK 504
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 42.7 bits (100), Expect = 2e-05
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 17/71 (23%)
Query: 179 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---------------WWWGT--RGEA 221
A++ E+L GDV+ V + W G R
Sbjct: 12 FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQ 71
Query: 222 SGWFPSAFVRL 232
G FP +V
Sbjct: 72 RGDFPGTYVEF 82
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 44.3 bits (104), Expect = 3e-05
Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 22/164 (13%)
Query: 170 PIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPS 227
+ ++ V+ A+ + +LGF G+ + +L+ +WW G+ P
Sbjct: 7 ASPLQDNLVI---ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPF 62
Query: 228 AFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVR--SRVVRELINTERDFV 285
FV S E K L R+ + L S ++RE +T F
Sbjct: 63 NFVAKANSLEPEPWFF---------KNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFS 113
Query: 286 KVLHDVSEGYLAECRRRNDMFSPEQIQTI-----FGNLEDILAF 324
+ D + + I F L +++
Sbjct: 114 LSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 157
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 43.5 bits (103), Expect = 2e-04
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 170 PIGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--GTRGEASGWFPS 227
+G +V+A ++D+ A+ E+L F+ GD + VL+ +WW G+ PS
Sbjct: 2 AMGSGIRIIVVA--LYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPS 58
Query: 228 AFVRLRVSQE 237
+V S E
Sbjct: 59 NYVARVDSLE 68
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 35.7 bits (82), Expect = 0.004
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 168 RKPIGMDEDFVVLAEAVW---DHVAMEAEELGFRAGDVIEVLD--TLDRDWWWGTRGEAS 222
P E D A + EL + G +E+L+ + W E S
Sbjct: 4 GSPGIPGSTLSGGCELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERS 63
Query: 223 ----GWFPSAFVRL 232
G PS+ + +
Sbjct: 64 PPQEGLVPSSTLCI 77
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 34.3 bits (78), Expect = 0.014
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 17/67 (25%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLDRD---------------WWWGT--RGEASGWF 225
A++D+ E++ GD++ V W G G F
Sbjct: 10 ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 69
Query: 226 PSAFVRL 232
P +V
Sbjct: 70 PGTYVEY 76
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 36.0 bits (82), Expect = 0.029
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 15/60 (25%)
Query: 183 AVWDHVAMEAEELGFRAGDVIEVLDTLD---------RDWWWGT------RGEASGWFPS 227
++ LGF GDV VLDTL W R + G P+
Sbjct: 9 THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPN 68
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.12
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 27/53 (50%)
Query: 325 QSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFRMYSEYCNSHP-MAI-ATLQ 375
Q+ L+ L+ L ++Y++ +S P +AI AT++
Sbjct: 20 QA--LKKLQASL---------------------KLYAD--DSAPALAIKATME 47
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 34.0 bits (77), Expect = 0.14
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 186 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPS 227
D V + + F A D + V + + DWW G G G+ PS
Sbjct: 53 DDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 97
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 33.6 bits (77), Expect = 0.18
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 195 LGFRAGDVIEVLDTLDRDWW 214
L F+ GD++ V + D +WW
Sbjct: 27 LPFKHGDILHVTNASDDEWW 46
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 33.6 bits (76), Expect = 0.20
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 12/81 (14%)
Query: 186 DHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTR------GEASGWFPSAFVRLRVSQ 236
++ L F G+V V+DTL W R G P+ + R Q
Sbjct: 114 EYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPN---KNRAEQ 170
Query: 237 EDTVEDCLAALASGGSKTLRR 257
+V+ L A G R
Sbjct: 171 LASVQYTLPKTAGGDRADFWR 191
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 33.2 bits (76), Expect = 0.22
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 194 ELGFRAGDVIEVLDTLDRDWW 214
L FR GDV+ V+D D +WW
Sbjct: 22 ALSFRFGDVLHVIDAGDEEWW 42
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 30.7 bits (69), Expect = 0.56
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 509 DHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKD--PHLGVTVRHAIKIHCSDKDK 566
D L Y + + ++ + I + +D P G + + ++ +
Sbjct: 34 DGTLGYYHDE--TAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREG-S 90
Query: 567 WLLFCCRSLEDKARWLAAFQQERA 590
L C + +D W A + +
Sbjct: 91 RLHLCAETRDDAIAWKTALMEANS 114
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural
genomics, structural genomics consortium, SGC; 2.39A
{Homo sapiens}
Length = 140
Score = 30.4 bits (68), Expect = 0.69
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 504 TLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSD 563
+FLF+ LV K K+N+ Y R + + L ++ + +R + +D
Sbjct: 37 EIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLF-ENQYYPNGIRLTSSVPGAD 95
Query: 564 KDKWLLFCCRSLEDKARWLAAFQQ---ERALVEQDR 596
+ F + +D+ ++ ++ E +E+ R
Sbjct: 96 IKVLINFNAPNPQDRKKFTDDLRESIAEVQEMEKHR 131
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 29.7 bits (66), Expect = 0.83
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 193 EELGFRAGDVIEVLDTLD--RDWWWGTRGEAS-GWFPSAFVRLRVSQEDTVED 242
EL F+ G+ IE++ D W G S G+ + V + +D
Sbjct: 42 NELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEIDYDSLKLKKD 94
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 31.4 bits (70), Expect = 0.92
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 186 DHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTR 218
++ L F G+V V+DTL W R
Sbjct: 106 EYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIR 141
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 29.4 bits (66), Expect = 1.1
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 554 RHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQ 587
HA ++ SD+ L S + A W+ Q
Sbjct: 66 PHAFQVILSDR-PCLELSAESEAEMAEWMQHLCQ 98
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 30.1 bits (68), Expect = 1.7
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 436 ITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGE-----DLIETSSQL----I 486
I+ A++ + D+ E + E LE+LA + V + E + ++ + +
Sbjct: 11 ISGAVDGVVDLKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITDSIRDYDP 70
Query: 487 HQGEVIRVTSGMWTNTITL 505
VI W + + +
Sbjct: 71 LNASVISRNPTNWNDQVEI 89
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 30.1 bits (67), Expect = 2.2
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 507 LFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHL-GVTVRHAIKIHCSDKD 565
+ D +L+Y K + + G P G H I I D+
Sbjct: 293 MDDRRLMYFKDP---LDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPDRK 349
Query: 566 KWLLFCCRSLEDKARWLAAFQQ--ERALVEQD 595
LF C + D+ W+AAFQ+ +R ++ Q+
Sbjct: 350 --FLFACETESDQREWVAAFQKAVDRPMLPQE 379
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 29.4 bits (65), Expect = 2.2
Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 10/126 (7%)
Query: 507 LFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDK 566
L H L K + + ++++ I ++ ++ SD +
Sbjct: 36 LRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETK------RKNVFRLTTSDCE- 88
Query: 567 WLLFCCRSLEDKARWLAAFQQERALVEQDREDGLE--FAPAAKELARMSAARCHSSRPPV 624
LF +D W+ Q+ L E+D + KE + + + P
Sbjct: 89 -CLFQAEDRDDMLAWIKTIQESSNLNEEDTGVTNRDLISRRIKEYNNLMSKAEQLPKTPR 147
Query: 625 VKHRSK 630
+
Sbjct: 148 QSLSIR 153
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of
RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A
{Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A*
1qmh_A* 1qmi_A
Length = 358
Score = 29.6 bits (66), Expect = 3.1
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 250 GGSKTLRRRTSISLLSNDQVRSRVVRE------LINTERDFVKVLHDVSEGYLAECRRRN 303
GG + LR S+S+++ +R L+ VK ++ + +
Sbjct: 34 GGGQILRSALSLSMITGQPFTITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGS 93
Query: 304 D--MFSPEQIQ 312
+F P ++
Sbjct: 94 QRLLFRPGTVR 104
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 28.3 bits (63), Expect = 3.2
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 18/95 (18%)
Query: 506 FLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKD 565
+ + L ++ A+LN+ T Q+ + K + + ++
Sbjct: 33 SVKNGILTISHAT-----SNRQPAKLNLLTCQVKPNAEDK---------KSFDLISHNRT 78
Query: 566 KWLLFCCRSLEDKARWLAAFQQ--ERALVEQDRED 598
F +D W++ E AL
Sbjct: 79 --YHFQAEDEQDYVAWISVLTNSKEEALTMAFSGP 111
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal
transduction, signaling protein; NMR {Caenorhabditis
elegans} SCOP: b.55.1.1
Length = 119
Score = 28.0 bits (62), Expect = 4.4
Identities = 6/35 (17%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 505 LFLFDHQLVYCKRDI-LKRNTHVYKARLNIDTSQI 538
+FLF +++++ ++D ++ + + + +D I
Sbjct: 30 VFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNI 64
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 27.7 bits (62), Expect = 4.7
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 18/79 (22%)
Query: 519 ILKRNT-HVYKARLNIDTSQIINLPDGKDPHLGVTVR---------HAIKIHCSDKDKWL 568
++K + Y A ++ + L LG TV ++ +
Sbjct: 30 VIKNKVLYTYAASEDVAALESQPL-------LGFTVTLVKDENSESKVFQLLHKGM-VFY 81
Query: 569 LFCCRSLEDKARWLAAFQQ 587
+F RW+ AFQ+
Sbjct: 82 VFKADDAHSTQRWIDAFQE 100
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 29.0 bits (64), Expect = 5.8
Identities = 32/260 (12%), Positives = 82/260 (31%), Gaps = 46/260 (17%)
Query: 316 GNLEDILAFQSSFLEDLETKLDWDAPY----KSCIGETFLKHKSGFRMYSEYCNSHPMAI 371
G E + + + +D + + S E +++ S E + +
Sbjct: 84 GEYESAVKY--ALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIID 141
Query: 372 ATLQELYQ-----HNNYSKFFEACRLM---------RGLIEIPLDGYLLTPVQRICKYPL 417
L +++ S+ A + ++ LD + +I Y L
Sbjct: 142 PKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLL 201
Query: 418 QLA-----------ELLK-----YTKTDHPDYVKITEALEAMRDVAMLINERKRRMESLE 461
LA +L+ + DY+ + + + + D + + K+ E +
Sbjct: 202 TLAITTVTNSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVNLNDAGLALQLFKKLKEEND 261
Query: 462 KLAAWQ-------QRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITL-FLFDHQLV 513
+ + Q + E L+ + + ++ + SG+ T FL +++ +
Sbjct: 262 EGLSAQIAFDLVSSASQQLL-EILVTELTAQGYDPALLNILSGLPTCDYYNTFLLNNKNI 320
Query: 514 YCK-RDILKRNTHVYKARLN 532
+ K + + +
Sbjct: 321 DIGLLNKSKSSLDGKFSLFH 340
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 28.9 bits (64), Expect = 5.8
Identities = 21/162 (12%), Positives = 45/162 (27%), Gaps = 19/162 (11%)
Query: 34 RDCTIFGPLIWRSSKEHRKGKKASRNQKCNSGDSGIQIEMVGRGTGAELQSRGLPRRRGQ 93
+C I K+ R + R QKC + VG A R + +
Sbjct: 92 LNCRI--------HKKSRNKCQYCRFQKCLA---------VGMSHNAIRFGRMPQAEKEK 134
Query: 94 MVRRTHSDLGGQRLFHWDVCNSYRKMISSPSPVKTRMENCADVQTRTKRIRPHHALRRSV 153
++ SD+ D+ + + S +K+ A + +
Sbjct: 135 LLAEISSDIDQLNPESADLRALAKHL--YDSYIKSFPLTKAKARAILTGKTTDKSPFVIY 192
Query: 154 SQPLGINELSPLLRRKPIGMDEDFVVLAEAVWDHVAMEAEEL 195
+ + + + E +A ++ + E
Sbjct: 193 DMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEA 234
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 27.2 bits (60), Expect = 7.6
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Query: 509 DHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKDPHLGVTVRHAIKIHCSDKDKWL 568
D L+Y + ++ + P G + ++I C D K +
Sbjct: 31 DGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDG-KTI 89
Query: 569 LFCCRSLEDKARWLAAFQQER 589
C S +D W Q R
Sbjct: 90 SLCAESTDDCLAWKFTLQDSR 110
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 28.7 bits (65), Expect = 7.7
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 15/79 (18%)
Query: 420 AELLKYTKTDHP---DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGE 476
A+L K KTD D + + L A+ + ES A V+ W
Sbjct: 310 AKLGKRHKTDIAVLAD-AQ--KTLAAI-------LAQVSERESTPWWQANLANVKNWRAY 359
Query: 477 --DLIETSSQLIHQGEVIR 493
L + + +V+R
Sbjct: 360 LASLEDKQEGPLQAYQVLR 378
>2pzh_A Hypothetical protein HP_0496; lipid, acyl-COA, bacterial membrane,
TOL-PAL system, thioest hot-DOG fold, hydrolase; 1.70A
{Helicobacter pylori}
Length = 135
Score = 27.3 bits (61), Expect = 9.6
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 380 HNNYSKFFEACR--LMRGLIEIPLDGYLLTPVQRI-CKY--PLQLAELL 423
H NY K+ E R +P + + ++ I + P L ++L
Sbjct: 20 HANYLKYCERARSEFFFKQNVLPENEEGVFVIRSIKADFFTPASLGQVL 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.415
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,050,923
Number of extensions: 618521
Number of successful extensions: 2101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1864
Number of HSP's successfully gapped: 256
Length of query: 630
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 531
Effective length of database: 3,937,614
Effective search space: 2090873034
Effective search space used: 2090873034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)