BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14880
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 267 bits (683), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 202/372 (54%), Gaps = 57/372 (15%)
Query: 138 RFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLN 197
+FGA SP KVYT ++E+V + RG+RV+ E DAPAH G GWQ DL VC
Sbjct: 243 KFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQ------DTDLTVCFK 296
Query: 198 DPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCR 257
W++ C++PPCGQLNP +Y L+DIY ++ + D +FHMG DE
Sbjct: 297 AEPWKSYCVEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTD-IFHMGGDE--------- 346
Query: 258 WQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWA 317
V CWN++ +I +FM+ + + + +++LW
Sbjct: 347 ---------------------------VSEACWNSSDSIQNFMMQNRWDLDKESFLKLWN 379
Query: 318 HFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLADLLI 377
+FQ KA +A G + LI+W+S LT+ + I +YL+ YIIQ W +DP L+
Sbjct: 380 YFQQKAQDKAYKAFGK-KLPLILWTSTLTNYKHIDDYLNKDDYIIQVWTTGVDPQIKGLL 438
Query: 378 SKGYQVIISTKDAWYLDHGFWG--------VTSYYRWQRVYDN-----LLPSSPLVLGGE 424
KGY++I+S DA Y D G+ + Y WQ+VYDN L VLGGE
Sbjct: 439 EKGYRLIMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPAVIALEHRDQVLGGE 498
Query: 425 VAMWTEYVDDQSLDGRLWPRTAAAAERLWSNPKSSSSEAETRFLEQRERLVEMGIRAEVT 484
A+W+E D +LDGRLWPR AA AERLW+ P +S +AE R L RERLV MGI+AE
Sbjct: 499 AALWSEQSDTSTLDGRLWPRAAALAERLWAEPATSWQDAEYRMLHIRERLVRMGIQAESL 558
Query: 485 TPEWCYLNDGQC 496
PEWCY N+G C
Sbjct: 559 QPEWCYQNEGYC 570
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 76 WQMCTRQQVPCL------LPRFGAYSPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAHA 129
W + Q P + L +FGA SP KVYT ++E+V + RGVRV+ E DAPAH
Sbjct: 223 WHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHV 282
Query: 130 GNGWQ 134
G GWQ
Sbjct: 283 GEGWQ 287
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 5 DDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLD 51
+ +++LW +FQ KA +A G + LI+W+S LT+ + I +YL+
Sbjct: 372 ESFLKLWNYFQQKAQDKAYKAFG-KKLPLILWTSTLTNYKHIDDYLN 417
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 148/372 (39%), Positives = 200/372 (53%), Gaps = 57/372 (15%)
Query: 138 RFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLN 197
+FGA SP KVYT ++E+V + RG+RV+ E DAPAH G GWQ DL VC
Sbjct: 243 KFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQ------DTDLTVCFK 296
Query: 198 DPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCR 257
W++ C+ PPCGQLNP +Y L+DIY ++ + D +FHMG DE
Sbjct: 297 AEPWKSYCVAPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTD-IFHMGGDE--------- 346
Query: 258 WQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWA 317
V CWN++ +I +FM+ + + + +++LW
Sbjct: 347 ---------------------------VSEACWNSSDSIQNFMMQNRWDLDKESFLKLWN 379
Query: 318 HFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLADLLI 377
+FQ KA +A G + LI+W+S LT+ + I +YL+ YIIQ W +DP L+
Sbjct: 380 YFQQKAQDKAYKAFGK-KLPLILWTSTLTNYKHIDDYLNKDDYIIQVWTTGVDPQIKGLL 438
Query: 378 SKGYQVIISTKDAWYLDHGFWG--------VTSYYRWQRVYDN-----LLPSSPLVLGGE 424
KGY++I+S DA Y D G+ + Y WQ+VYDN L VLGGE
Sbjct: 439 EKGYRLIMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPAVIALEHRDQVLGGE 498
Query: 425 VAMWTEYVDDQSLDGRLWPRTAAAAERLWSNPKSSSSEAETRFLEQRERLVEMGIRAEVT 484
A+W+E D +LDGRLWPR AA AERLW+ P +S +AE R L RER V MGI+AE
Sbjct: 499 AALWSEQSDTSTLDGRLWPRAAALAERLWAEPATSWQDAEYRMLHIRERFVRMGIQAESL 558
Query: 485 TPEWCYLNDGQC 496
PEWCY N+G C
Sbjct: 559 QPEWCYQNEGYC 570
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 76 WQMCTRQQVPCL------LPRFGAYSPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAHA 129
W + Q P + L +FGA SP KVYT ++E+V + RGVRV+ E DAPAH
Sbjct: 223 WHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHV 282
Query: 130 GNGWQ 134
G GWQ
Sbjct: 283 GEGWQ 287
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 5 DDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLD 51
+ +++LW +FQ KA +A G + LI+W+S LT+ + I +YL+
Sbjct: 372 ESFLKLWNYFQQKAQDKAYKAFGK-KLPLILWTSTLTNYKHIDDYLN 417
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 265 bits (677), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 149/372 (40%), Positives = 201/372 (54%), Gaps = 57/372 (15%)
Query: 138 RFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLN 197
+FGA SP KVYT ++E+V + RG+RV+ E DAPAH G GWQ DL VC
Sbjct: 246 KFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQ------DTDLTVCFK 299
Query: 198 DPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCR 257
W++ C +PPCGQLNP +Y L+DIY ++ + D +FHMG DE
Sbjct: 300 AEPWKSYCGEPPCGQLNPTKDELYQYLEDIYSDMAEVFDTTD-IFHMGGDE--------- 349
Query: 258 WQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWA 317
V CWN++ +I +FM+ + + + +++LW
Sbjct: 350 ---------------------------VSEACWNSSDSIQNFMMQNRWDLDKESFLKLWN 382
Query: 318 HFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLADLLI 377
+FQ KA +A G + LI+W+S LT+ + I +YL+ YIIQ W +DP L+
Sbjct: 383 YFQQKAQDKAYKAFGK-KLPLILWTSTLTNYKHIDDYLNKDDYIIQVWTTGVDPQIKGLL 441
Query: 378 SKGYQVIISTKDAWYLDHGFWG--------VTSYYRWQRVYDN-----LLPSSPLVLGGE 424
KGY++I+S DA Y D G+ + Y WQ+VYDN L VLGGE
Sbjct: 442 EKGYRLIMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPAVIALEHRDQVLGGE 501
Query: 425 VAMWTEYVDDQSLDGRLWPRTAAAAERLWSNPKSSSSEAETRFLEQRERLVEMGIRAEVT 484
A+W+E D +LDGRLWPR AA AERLW+ P +S +AE R L RERLV MGI+AE
Sbjct: 502 AALWSEQSDTSTLDGRLWPRAAALAERLWAEPATSWQDAEYRMLHIRERLVRMGIQAESL 561
Query: 485 TPEWCYLNDGQC 496
PEWCY N+G C
Sbjct: 562 QPEWCYQNEGYC 573
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 76 WQMCTRQQVPCL------LPRFGAYSPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAHA 129
W + Q P + L +FGA SP KVYT ++E+V + RGVRV+ E DAPAH
Sbjct: 226 WHITDSQSFPFVTTKRPNLYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHV 285
Query: 130 GNGWQ 134
G GWQ
Sbjct: 286 GEGWQ 290
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 5 DDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLD 51
+ +++LW +FQ KA +A G + LI+W+S LT+ + I +YL+
Sbjct: 375 ESFLKLWNYFQQKAQDKAYKAFG-KKLPLILWTSTLTNYKHIDDYLN 420
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 149/355 (41%), Gaps = 66/355 (18%)
Query: 140 GAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDP 199
G+YS + VYTP +V+ ++ YA+LRGIRV+ E D P H WG G DL+ P
Sbjct: 258 GSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHT---LSWGK--GQKDLLT----P 308
Query: 200 SWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCRWQ 259
+ G +NP Y+ L + E+ + + D+ H+G DE
Sbjct: 309 CYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEV--FPDQFIHLGGDE----------- 355
Query: 260 MCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWAHF 319
V KCW + P I DFM G T D+ +L + +
Sbjct: 356 -------------------------VEFKCWESNPKIQDFMRQKGFGT---DFKKLESFY 387
Query: 320 QNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLA-DLLIS 378
K LD N+ IVW D L P I++ W P + +
Sbjct: 388 IQKV---LDIIATINKGS-IVWQEVFDDKA----KLAPGT-IVEVWKDSAYPEELSRVTA 438
Query: 379 KGYQVIISTKDAWYLDHGFWGVT--SYYRWQRV-YDNLLPSSPLVLGGEVAMWTEYVDDQ 435
G+ VI+S WYLD +G YY+ + + + L +GGE +W EYVD
Sbjct: 439 SGFPVILSA--PWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDAT 496
Query: 436 SLDGRLWPRTAAAAERLWSNPK-SSSSEAETRFLEQRERLVEMGIRAEVTTPEWC 489
+L RLWPR +A ERLWS+ +A R R R+VE GI A+ +C
Sbjct: 497 NLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 551
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 7 YIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPQTCGTQQVVREPLL 66
Y + F + +D +R LI S H +IIL LD V+
Sbjct: 180 YQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLH---- 235
Query: 67 LVTLMALCRWQMCTRQQVPCLLPRF------GAYSPAKVYTPLEVQELVHYAKLRGVRVI 120
W + Q P F G+YS + VYTP +V+ ++ YA+LRG+RV+
Sbjct: 236 ---------WHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVL 286
Query: 121 FELDAPAHA 129
E D P H
Sbjct: 287 PEFDTPGHT 295
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 149/355 (41%), Gaps = 66/355 (18%)
Query: 140 GAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDP 199
G+YS + VYTP +V+ ++ YA+LRGIRV+ E D P H WG G DL+ P
Sbjct: 217 GSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHT---LSWGK--GQKDLLT----P 267
Query: 200 SWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCRWQ 259
+ G +NP Y+ L + E+ + + D+ H+G DE
Sbjct: 268 CYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEV--FPDQFIHLGGDE----------- 314
Query: 260 MCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWAHF 319
V KCW + P I DFM G T D+ +L + +
Sbjct: 315 -------------------------VEFKCWESNPKIQDFMRQKGFGT---DFKKLESFY 346
Query: 320 QNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLA-DLLIS 378
K LD N+ IVW D L P I++ W P + +
Sbjct: 347 IQKV---LDIIATINKGS-IVWQEVFDDKA----KLAPGT-IVEVWKDSAYPEELSRVTA 397
Query: 379 KGYQVIISTKDAWYLDHGFWGVT--SYYRWQRV-YDNLLPSSPLVLGGEVAMWTEYVDDQ 435
G+ VI+S WYLD +G YY+ + + + L +GGE +W EYVD
Sbjct: 398 SGFPVILSA--PWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDAT 455
Query: 436 SLDGRLWPRTAAAAERLWSNPK-SSSSEAETRFLEQRERLVEMGIRAEVTTPEWC 489
+L RLWPR +A ERLWS+ +A R R R+VE GI A+ +C
Sbjct: 456 NLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 510
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 7 YIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPQTCGTQQVVREPLL 66
Y + F + +D +R LI S H +IIL LD V+
Sbjct: 139 YQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLH---- 194
Query: 67 LVTLMALCRWQMCTRQQVPCLLPRF------GAYSPAKVYTPLEVQELVHYAKLRGVRVI 120
W + Q P F G+YS + VYTP +V+ ++ YA+LRG+RV+
Sbjct: 195 ---------WHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVL 245
Query: 121 FELDAPAHA 129
E D P H
Sbjct: 246 PEFDTPGHT 254
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 149/355 (41%), Gaps = 66/355 (18%)
Query: 140 GAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDP 199
G+YS + VYTP +V+ ++ YA+LRGIRV+ E D P H WG G DL+ P
Sbjct: 209 GSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHT---LSWGK--GQKDLLT----P 259
Query: 200 SWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCRWQ 259
+ G +NP Y+ L + E+ + + D+ H+G DE
Sbjct: 260 CYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEV--FPDQFIHLGGDE----------- 306
Query: 260 MCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWAHF 319
V KCW + P I DFM G T D+ +L + +
Sbjct: 307 -------------------------VEFKCWESNPKIQDFMRQKGFGT---DFKKLESFY 338
Query: 320 QNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLA-DLLIS 378
K LD N+ IVW D L P I++ W P + +
Sbjct: 339 IQKV---LDIIATINKGS-IVWQEVFDDKA----KLAPGT-IVEVWKDSAYPEELSRVTA 389
Query: 379 KGYQVIISTKDAWYLDHGFWGVT--SYYRWQRV-YDNLLPSSPLVLGGEVAMWTEYVDDQ 435
G+ VI+S WYLD +G YY+ + + + L +GGE +W EYVD
Sbjct: 390 SGFPVILSA--PWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDAT 447
Query: 436 SLDGRLWPRTAAAAERLWSNPK-SSSSEAETRFLEQRERLVEMGIRAEVTTPEWC 489
+L RLWPR +A ERLWS+ +A R R R+VE GI A+ +C
Sbjct: 448 NLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 502
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 7 YIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPQTCGTQQVVREPLL 66
Y + F + +D +R LI S H +IIL LD V+
Sbjct: 131 YQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLH---- 186
Query: 67 LVTLMALCRWQMCTRQQVPCLLPRF------GAYSPAKVYTPLEVQELVHYAKLRGVRVI 120
W + Q P F G+YS + VYTP +V+ ++ YA+LRG+RV+
Sbjct: 187 ---------WHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVL 237
Query: 121 FELDAPAHA 129
E D P H
Sbjct: 238 PEFDTPGHT 246
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 149/355 (41%), Gaps = 66/355 (18%)
Query: 140 GAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDP 199
G+YS + VYTP +V+ ++ YA+LRGIRV+ E D P H WG G DL+ P
Sbjct: 209 GSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHT---LSWGK--GQKDLLT----P 259
Query: 200 SWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCRWQ 259
+ G +NP Y+ L + E+ + + D+ H+G DE
Sbjct: 260 CYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEV--FPDQFIHLGGDE----------- 306
Query: 260 MCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWAHF 319
V KCW + P I DFM G T D+ +L + +
Sbjct: 307 -------------------------VEFKCWESNPKIQDFMRQKGFGT---DFKKLESFY 338
Query: 320 QNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLA-DLLIS 378
K LD N+ IVW D L P I++ W P + +
Sbjct: 339 IQKV---LDIIATINKGS-IVWQEVFDDKA----KLAPGT-IVEVWKDSAYPEELSRVTA 389
Query: 379 KGYQVIISTKDAWYLDHGFWGVT--SYYRWQRV-YDNLLPSSPLVLGGEVAMWTEYVDDQ 435
G+ VI+S WYLD +G YY+ + + + L +GGE +W EYVD
Sbjct: 390 SGFPVILSA--PWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDAT 447
Query: 436 SLDGRLWPRTAAAAERLWSNPK-SSSSEAETRFLEQRERLVEMGIRAEVTTPEWC 489
+L RLWPR +A ERLWS+ +A R R R+VE GI A+ +C
Sbjct: 448 NLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 502
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 7 YIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPQTCGTQQVVREPLL 66
Y + F + +D +R LI S H +IIL LD V+
Sbjct: 131 YQDSYGTFTINESTIIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLH---- 186
Query: 67 LVTLMALCRWQMCTRQQVPCLLPRF------GAYSPAKVYTPLEVQELVHYAKLRGVRVI 120
W + Q P F G+YS + VYTP +V+ ++ YA+LRG+RV+
Sbjct: 187 ---------WHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVL 237
Query: 121 FELDAPAHA 129
E D P H
Sbjct: 238 PEFDTPGHT 246
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 156/366 (42%), Gaps = 80/366 (21%)
Query: 138 RFGAYSPAK-VYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCL 196
R G+Y+P +YT +V+E++ YA+LRGIRV+ E D P H WGP G+ L+
Sbjct: 201 RKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHT---LSWGP--GIPGLLT-- 253
Query: 197 NDPSWRANCIQPPCGQLNPINP---HVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLM 253
P + + P G P+NP + Y + + E+ + + D H+G DE
Sbjct: 254 --PCYSGS---EPSGTFGPVNPSLNNTYEFMSTFFLEVSSV--FPDFYLHLGGDE----- 301
Query: 254 ALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYI 313
V CW + P I DFM G +D+
Sbjct: 302 -------------------------------VDFTCWKSNPEIQDFMRKKGFG---EDFK 327
Query: 314 QLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPK-RYIIQTWVPRIDPL 372
QL + + +L + V +VW E+ N + + IIQ W I P+
Sbjct: 328 QLESFY----IQTLLDIVSSYGKGYVVWQ------EVFDNKVKIQPDTIIQVWREDI-PV 376
Query: 373 A-----DLLISKGYQVIISTKDAWYLDHGFWG---VTSYYRWQRVYDNLLPSSPLVLGGE 424
+L+ G++ ++S WYL+ +G Y ++ LV+GGE
Sbjct: 377 NYMKELELVTKAGFRALLSA--PWYLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGE 434
Query: 425 VAMWTEYVDDQSLDGRLWPRTAAAAERLWSNPKSSS-SEAETRFLEQRERLVEMGIRAEV 483
MW EYVD+ +L RLWPR A AERLWSN +S + A R R L+ G++A+
Sbjct: 435 ACMWGEYVDNTNLVPRLWPRAGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQP 494
Query: 484 TTPEWC 489
+C
Sbjct: 495 LNVGFC 500
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 100 YTPLEVQELVHYAKLRGVRVIFELDAPAHAGNGWQWGPRFGAYSPAKVYTPLEV 153
YT +++E+V +A R + VI E+D P H+ P GA PA +P+EV
Sbjct: 221 YTQDDLREIVAFAADRHITVIPEIDVPGHSQAAIAAYPELGA-GPADGSSPVEV 273
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 25/100 (25%)
Query: 377 ISKGYQVIISTKDAWYLDH------------GFWGVTSYYRWQRVYD-NLLPS------S 417
+ KGY V+ + YLDH GF VT+ Q VY+ LP
Sbjct: 392 LRKGYDVVXCPEHKLYLDHRQADGDDEPVPVGF--VTTL---QAVYEFEPLPGVEGTDFP 446
Query: 418 PLVLGGEVAMWTEYVDD-QSLDGRLWPRTAAAAERLWSNP 456
+LG + +W+E++D + + +PR +A +E WSNP
Sbjct: 447 GRLLGAQANIWSEHLDSPRRVQFAAFPRLSAISEVFWSNP 486
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 148 YTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLG 190
YT +++E+V +A R I VI E+D P H+ P G G
Sbjct: 221 YTQDDLREIVAFAADRHITVIPEIDVPGHSQAAIAAYPELGAG 263
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 83 QVPCLLPRFGAYSP--AKVYTPLEVQELVHYAKLRGVRVIFELDAPAHA 129
+ CLLP++G ++ + +++ YA+ R + VI E+D PAHA
Sbjct: 378 ETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 74/355 (20%), Positives = 126/355 (35%), Gaps = 78/355 (21%)
Query: 155 ELVHYAKLRGIRVIFELDAPA----------------HAGNGWQWGPRYGLGDLIVCLND 198
+++ YA+ R I VI E+D PA HA Q + L D N
Sbjct: 404 DIIKYAQARQIEVIPEIDMPAHARAAVVSMEARYKKLHAAGKEQEANEFRLVDQTDTSNT 463
Query: 199 PSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDE---MFHMGADELVTLMAL 255
S + Q LNP + + GE+ M K + +H G D+ +
Sbjct: 464 TSVQFFNRQ---SYLNPCLDSSQRFVDKVIGEIAQMHKEAGQPIKTWHFGGDDAKNIRLG 520
Query: 256 CRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQL 315
+ T + P +P G+ S K W + + M+ GK D L
Sbjct: 521 AGY---TDKAKP--EPGKGIIDQSNE-----DKPWAKS-QVCQTMIKEGKVA---DMEHL 566
Query: 316 WAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVP----RIDP 371
++F + + + H ++ W L D E + R + W D
Sbjct: 567 PSYFGQEVSKLVK---AHGIDRMQAWQDGLKDAESSKAFA-TSRVGVNFWDTLYWGGFDS 622
Query: 372 LADLLISKGYQVIISTKDAWYLD---------HGFWGVTSYYRWQRVY----DNLLPSS- 417
+ D +KGY+V++S D Y+D G++ T + ++V+ DN+ ++
Sbjct: 623 VND-WANKGYEVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDERKVFSFAPDNMPQNAE 681
Query: 418 ------------------PLVLGGEVAMWTE-YVDDQSLDGRLWPRTAAAAERLW 453
P G +W+E D ++ ++PR + AER W
Sbjct: 682 TSVDRDGNHFNAKSDKPWPGAYGLSAQLWSETQRTDPQMEYMIFPRALSVAERSW 736
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 83 QVPCLLPRFGAYSP--AKVYTPLEVQELVHYAKLRGVRVIFELDAPAHA 129
+ CLLP++G ++ + +++ YA+ R + VI E+D PAHA
Sbjct: 378 ETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 155 ELVHYAKLRGIRVIFELDAPAHA 177
+++ YA+ R I VI E+D PAHA
Sbjct: 404 DIIKYAQARQIEVIPEIDMPAHA 426
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 83 QVPCLLPRFGAYSP--AKVYTPLEVQELVHYAKLRGVRVIFELDAPAHA 129
+ CLLP++G ++ + +++ YA+ R + VI E+D PAHA
Sbjct: 378 ETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHA 426
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 73/352 (20%), Positives = 127/352 (36%), Gaps = 72/352 (20%)
Query: 155 ELVHYAKLRGIRVIFELDAPAHAGNG-----WQWGPRYGLGDLIVC----LNDPSWRANC 205
+++ YA+ R I VI E+D PAHA ++ + G L DP+ +N
Sbjct: 404 DIIKYAQARQIEVIPEIDMPAHARAAVVSMEARYKKLHAAGKEQEANEFRLVDPTDTSNT 463
Query: 206 IQPPC----GQLNPINPHVYTVLKDIYGELMGMAKYGDE---MFHMGADELVTLMALCRW 258
LNP + + GE+ M K + +H G DE + +
Sbjct: 464 TSVQFFNRQSYLNPCLDSSQRFVDKVIGEIAQMHKEAGQPIKTWHFGGDEAKNIRLGAGY 523
Query: 259 QMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWAH 318
T + P +P G+ K W + + M+ GK D L ++
Sbjct: 524 ---TDKAKP--EPGKGIIDQGNE-----DKPWAKS-QVCQTMIKEGKVA---DMEHLPSY 569
Query: 319 FQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVP----RIDPLAD 374
F + + + H ++ W L D E + R + W D + D
Sbjct: 570 FGQEVSKLVK---AHGIDRMQAWQDGLKDAESSKAFA-TSRVGVNFWDTLYWGGFDSVND 625
Query: 375 LLISKGYQVIISTKDAWYLD---------HGFWGVTSYYRWQRVY----DNLLPSS---- 417
+KGY+V++S D Y+D G++ T + ++V+ DN+ ++
Sbjct: 626 -WANKGYEVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDERKVFSFAPDNMPQNAETSV 684
Query: 418 ---------------PLVLGGEVAMWTE-YVDDQSLDGRLWPRTAAAAERLW 453
P G +W+E D ++ ++PR + AER W
Sbjct: 685 DRDGNHFNAKSDKPWPGAYGLSAQLWSETQRTDPQMEYMIFPRALSVAERSW 736
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 143 SPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAH 176
P YT E +E+V YA R + V+ E+D P H
Sbjct: 223 GPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGH 256
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 95 SPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAH 128
P YT E +E+V YA R + V+ E+D P H
Sbjct: 223 GPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGH 256
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 143 SPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAH 176
P YT E +E+V YA R + V+ E+D P H
Sbjct: 223 GPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGH 256
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 95 SPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAH 128
P YT E +E+V YA R + V+ E+D P H
Sbjct: 223 GPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGH 256
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 143 SPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAH 176
P YT E +E+V YA R + V+ E+D P H
Sbjct: 223 GPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGH 256
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 95 SPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAH 128
P YT E +E+V YA R + V+ E+D P H
Sbjct: 223 GPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGH 256
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 148 YTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDPSWRANCIQ 207
YT + +++V YA R I VI E+D P H G+L +P + ++
Sbjct: 253 YTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAALA-----SYGEL-----NPDGKRKAMR 302
Query: 208 PPCG----QLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADE 248
L P Y ++D+ EL ++ H+G DE
Sbjct: 303 TDTAVGYSTLMPRAEITYQFVEDVISELAAISP--SPYIHLGGDE 345
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 100 YTPLEVQELVHYAKLRGVRVIFELDAPAHAGNGWQWGPRFGAYSPAKVYTPLEVQELVHY 159
YT + +++V YA R + VI E+D P H +G +P + V Y
Sbjct: 253 YTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAAL---ASYGELNPDGKRKAMRTDTAVGY 309
Query: 160 AKL 162
+ L
Sbjct: 310 STL 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,706,958
Number of Sequences: 62578
Number of extensions: 738689
Number of successful extensions: 2039
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1967
Number of HSP's gapped (non-prelim): 50
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)