RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14880
(497 letters)
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase,
hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia
furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A*
Length = 572
Score = 336 bits (864), Expect = e-110
Identities = 147/372 (39%), Positives = 199/372 (53%), Gaps = 57/372 (15%)
Query: 138 RFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLN 197
+FGA SP KVYT ++E+V + RG+RV+ E DAPAH G GWQ L VC
Sbjct: 243 KFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGWQDTD------LTVCFK 296
Query: 198 DPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCR 257
W++ C++PPCGQLNP +Y L+DIY ++ + ++FHMG DE
Sbjct: 297 AEPWKSYCVEPPCGQLNPTKDELYQYLEDIYSDMAEVFDT-TDIFHMGGDE--------- 346
Query: 258 WQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWA 317
V CWN++ +I +FM+ + + + +++LW
Sbjct: 347 ---------------------------VSEACWNSSDSIQNFMMQNRWDLDKESFLKLWN 379
Query: 318 HFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLADLLI 377
+FQ KA +A G LI+W+S LT+ + I +YL+ YIIQ W +DP L+
Sbjct: 380 YFQQKAQDKAYKAFGKKLP-LILWTSTLTNYKHIDDYLNKDDYIIQVWTTGVDPQIKGLL 438
Query: 378 SKGYQVIISTKDAWYLDHGFWGVTS--------YYRWQRVYDN-----LLPSSPLVLGGE 424
KGY++I+S DA Y D G+ Y WQ+VYDN L VLGGE
Sbjct: 439 EKGYRLIMSNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPAVIALEHRDQVLGGE 498
Query: 425 VAMWTEYVDDQSLDGRLWPRTAAAAERLWSNPKSSSSEAETRFLEQRERLVEMGIRAEVT 484
A+W+E D +LDGRLWPR AA AERLW+ P +S +AE R L RERLV MGI+AE
Sbjct: 499 AALWSEQSDTSTLDGRLWPRAAALAERLWAEPATSWQDAEYRMLHIRERLVRMGIQAESL 558
Query: 485 TPEWCYLNDGQC 496
PEWCY N+G C
Sbjct: 559 QPEWCYQNEGYC 570
Score = 41.3 bits (97), Expect = 6e-04
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 6 DYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPQ 53
+++LW +FQ KA +A G LI+W+S LT+ + I +YL+
Sbjct: 373 SFLKLWNYFQQKAQDKAYKAFGKKLP-LILWTSTLTNYKHIDDYLNKD 419
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer,
family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A*
2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Length = 507
Score = 270 bits (692), Expect = 5e-85
Identities = 97/365 (26%), Positives = 143/365 (39%), Gaps = 74/365 (20%)
Query: 138 RFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLN 197
G+YS + VYTP +V+ ++ YA+LRGIRV+ E D P H + + L C +
Sbjct: 207 NKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQK----DLLTPCYS 262
Query: 198 DPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCR 257
+ G +NP Y+ L + E+ + D+ H+G DE
Sbjct: 263 RQNK-----LDSFGPINPTLNTTYSFLTTFFKEISEVFP--DQFIHLGGDE--------- 306
Query: 258 WQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWA 317
V KCW + P I DFM G T D+ +L +
Sbjct: 307 ---------------------------VEFKCWESNPKIQDFMRQKGFGT---DFKKLES 336
Query: 318 HFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPL-ADLL 376
+ K + N+ IVW D + I++ W P +
Sbjct: 337 FYIQKVLDIIAT---INKG-SIVWQEVFDDKAKL-----APGTIVEVWKDSAYPEELSRV 387
Query: 377 ISKGYQVIISTKDAWYLDHGFWGVTSYYRWQRVYDN-------LLPSSPLVLGGEVAMWT 429
+ G+ VI+S WYLD +G W++ Y L +GGE +W
Sbjct: 388 TASGFPVILSA--PWYLDLISYGQD----WRKYYKVEPLDFGGTQKQKQLFIGGEACLWG 441
Query: 430 EYVDDQSLDGRLWPRTAAAAERLWSNPKSSS-SEAETRFLEQRERLVEMGIRAEVTTPEW 488
EYVD +L RLWPR +A ERLWS+ +A R R R+VE GI A+ +
Sbjct: 442 EYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGY 501
Query: 489 CYLND 493
C +
Sbjct: 502 CNHEN 506
Score = 29.7 bits (67), Expect = 2.2
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 5 DDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTD 42
D+ +L + + K + N+ IVW D
Sbjct: 329 TDFKKLESFYIQKVLDIIAT---INKG-SIVWQEVFDD 362
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A,
glycosidase, TAY-sachs disease, GM2 ganglisode, TIM
barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Length = 507
Score = 255 bits (653), Expect = 3e-79
Identities = 94/371 (25%), Positives = 140/371 (37%), Gaps = 84/371 (22%)
Query: 138 RFGAYSPA-KVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCL 196
R G+Y+P +YT +V+E++ YA+LRGIRV+ E D P H + P L+
Sbjct: 201 RKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWGPGIP-----GLLTP- 254
Query: 197 NDPSWRANCIQPPCGQLNPINP---HVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLM 253
P G P+NP + Y + + E+ + D H+G DE
Sbjct: 255 ------CYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFP--DFYLHLGGDE----- 301
Query: 254 ALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYI 313
V CW + P I DFM G F
Sbjct: 302 -------------------------------VDFTCWKSNPEIQDFMRKKGFGEDFKQ-- 328
Query: 314 QLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTW----VPRI 369
L + + + + + +VW + I IIQ W
Sbjct: 329 -LESFYIQTLLDIVSS---YGKG-YVVWQEVFDNKVKI-----QPDTIIQVWREDIPVNY 378
Query: 370 DPLADLLISKGYQVIISTKDAWYLDHGFWGVTSYYRWQRVY-------DNLLPSSPLVLG 422
+L+ G++ ++S WYL+ +G W+ Y + LV+G
Sbjct: 379 MKELELVTKAGFRALLSA--PWYLNRISYGPD----WKDFYVVEPLAFEGTPEQKALVIG 432
Query: 423 GEVAMWTEYVDDQSLDGRLWPRTAAAAERLWSNPKSSS-SEAETRFLEQRERLVEMGIRA 481
GE MW EYVD+ +L RLWPR A AERLWSN +S + A R R L+ G++A
Sbjct: 433 GEACMWGEYVDNTNLVPRLWPRAGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQA 492
Query: 482 EVTTPEWCYLN 492
+ +C
Sbjct: 493 QPLNVGFCEQE 503
Score = 29.7 bits (67), Expect = 2.2
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 5 DDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEII 46
+D+ QL + + + + + +VW + I
Sbjct: 324 EDFKQLESFYIQTLLDIVSS---YGKG-YVVWQEVFDNKVKI 361
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
substrate-assisted catalysis, alpha/beta barrel,
isofagomin inhibitor complex; HET: IFG; 1.75A
{Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Length = 512
Score = 179 bits (456), Expect = 1e-50
Identities = 68/365 (18%), Positives = 101/365 (27%), Gaps = 102/365 (27%)
Query: 138 RFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLN 197
P YT E +E+V YA R + V+ E+D P H C
Sbjct: 218 TEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELN------CDG 271
Query: 198 DPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCR 257
+ L Y + D+ GEL + H+G DE +
Sbjct: 272 VAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAAL--TPGRYLHIGGDEAHS----TP 325
Query: 258 WQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWA 317
+ F+K + + +GK
Sbjct: 326 KA----------------------DFVAFMK------RVQPIVAKYGK------------ 345
Query: 318 HFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLADL-- 375
++ W ++ + ++Q W A+
Sbjct: 346 -------------------TVVGWH------QLAGAEP-VEGALVQYWGLDRTGDAEKAE 379
Query: 376 ---LISKGYQVIISTKDAWYLDHGF---------WGVTSYYRWQRVYD----NLLPSSP- 418
G +I+S D YLD + W Y QR YD LP +P
Sbjct: 380 VAEAARNGTGLILSPADRTYLDMKYTKDTPLGLSWA--GYVEVQRSYDWDPAGYLPGAPA 437
Query: 419 -LVLGGEVAMWTEYVDDQS-LDGRLWPRTAAAAERLWSNPKSSS-SEAETRFLEQRERLV 475
V G E +WTE + D LD +PR AE WS + + R Q
Sbjct: 438 DAVRGVEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSPASTHDWDTYKVRLAAQAPYWE 497
Query: 476 EMGIR 480
GI
Sbjct: 498 AAGID 502
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Length = 543
Score = 173 bits (440), Expect = 4e-48
Identities = 73/383 (19%), Positives = 122/383 (31%), Gaps = 80/383 (20%)
Query: 127 AHAGNGWQWGPRFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPR 186
+ G F YT +++E+V +A R I VI E+D P H+
Sbjct: 200 RESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDVPGHS---QAAIAA 256
Query: 187 YGLGDLIVCLNDPS--WRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHM 244
Y +L D S + ++ +++ E++ + + +
Sbjct: 257 YP--ELGAGPADGSSPVEVWTRWGINETVLEVSETSLEFYRNVLDEVVEI--FPSPWISL 312
Query: 245 GADELVTLMALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHG 304
G DE V + W + G
Sbjct: 313 GGDE------------------------------------VPLTQWQASAQAQAKAAELG 336
Query: 305 KNTTFDDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQT 364
DD L + F + A L H R VW EI L P ++ +
Sbjct: 337 ----LDDVSGLHSWFVGQLALHLKH---HGR-ATSVWD------EIGDGGL-PDGALVAS 381
Query: 365 WVPRIDPLADLLISKGYQVIISTKDAWYLDH-------------GFWGVTSYYRWQRVYD 411
W R + KGY V++ + YLDH + + Y ++ +
Sbjct: 382 W--RGYEGGIDALRKGYDVVMCPEHKLYLDHRQADGDDEPVPVGFVTTLQAVYEFEPLPG 439
Query: 412 NLLPSSP-LVLGGEVAMWTEYVDDQS-LDGRLWPRTAAAAERLWSNPKSSS-SEAETRFL 468
P +LG + +W+E++D + +PR +A +E WSNP E TR
Sbjct: 440 VEGTDFPGRLLGAQANIWSEHLDSPRRVQFAAFPRLSAISEVFWSNPAGRDYDEFLTRLT 499
Query: 469 -EQRERLVEMGIRAE-VTTPEWC 489
RL MG+ ++ P
Sbjct: 500 GAHLARLEAMGVEYRPLSGPAPW 522
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase,
glycosphingolipids, paenibacill GH20, hydrolase,
structural genomics, NPPSFA; HET: NAG; 1.60A
{Paenibacillus SP} PDB: 3gh4_A* 3gh7_A*
Length = 525
Score = 166 bits (423), Expect = 6e-46
Identities = 62/355 (17%), Positives = 105/355 (29%), Gaps = 91/355 (25%)
Query: 138 RFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLN 197
P YT + +++V YA R I VI E+D P H YG +L
Sbjct: 243 GQVGGGPGGYYTQEQFKDIVSYAAERYIEVIPEIDMPGHTNA---ALASYG--ELN-PDG 296
Query: 198 DPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCR 257
L P Y ++D+ EL ++ H+G DE
Sbjct: 297 KRKAMRTDTAVGYSTLMPRAEITYQFVEDVISELAAISP--SPYIHLGGDE--------- 345
Query: 258 WQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWA 317
+
Sbjct: 346 ---------------------------SNATSA-----------------------ADYD 355
Query: 318 HFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLADLLI 377
+F + A + + + K++ W + ++Q W
Sbjct: 356 YFFGRVTAIANS---YGK-KVVGWD------PSDTSSGATSDSVLQNWT-CSASTGTAAK 404
Query: 378 SKGYQVIISTKDAWYLDHGFWGVT-------SYYRWQRVYD---NLLPSSPLVLGGEVAM 427
+KG +VI+S + YLD ++ + + R Y+ + G E +
Sbjct: 405 AKGMKVIVSPAN-AYLDMKYYSDSPIGLQWRGFVNTNRAYNWDPTDCIKGANIYGVESTL 463
Query: 428 WTEYVDDQS-LDGRLWPRTAAAAERLWSNPKSSS-SEAETRFLEQRERLVEMGIR 480
WTE Q LD L+P+ + AE W+ + + + R +E RL GI+
Sbjct: 464 WTETFVTQDHLDYMLYPKLLSNAEVGWTARGDRNWDDFKERLIEHTPRLQNKGIK 518
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter
actinomycetemcomitans} SCOP: c.1.8.6
Length = 367
Score = 161 bits (409), Expect = 3e-45
Identities = 44/352 (12%), Positives = 96/352 (27%), Gaps = 99/352 (28%)
Query: 136 GPRFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVC 195
G Y+ + ++ ++ YAK +GI +I ELD+P H ++ +
Sbjct: 80 GIYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQK--------D 131
Query: 196 LNDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMAL 255
+ + +++ N T ++ + E++ + + FH+G DE
Sbjct: 132 RGVKYLQGLKSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDE------- 184
Query: 256 CRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQL 315
+N ++I
Sbjct: 185 -----------------------------FGYSVESN-----------------HEFIT- 197
Query: 316 WAHFQNKAAASLDEAVGHNRTKLIVWSSHLT-------DPEIILNY----LDPKRYIIQT 364
+ NK + L++ K +W+ L +P I + Y D +
Sbjct: 198 ---YANKLSYFLEK---KGL-KTRMWNDGLIKNTFEQINPNIEITYWSYDGDTQDKNEAA 250
Query: 365 WVPRIDPLADLLISKGYQVIISTKDAWYLDHG----------FWGVTSYYRWQRVYDNLL 414
+ L++KG+ V+ Y+ F W +
Sbjct: 251 ERRDMRVSLPELLAKGFTVLNYNSYYLYIVPKASPTFSQDAAFAAKDVIKNWDLGVWDGR 310
Query: 415 PSS------PLVLGGEVAMWTEYVDDQS---LDGRLWPRTAAAAERLWSNPK 457
+ + G +++W E + A + +
Sbjct: 311 NTKNRVQNTHEIAGAALSIWGEDAKALKDETIQKNTKSLLEAVIHKTNGDEH 362
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET:
ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A*
2yl8_A* 3rpm_A*
Length = 434
Score = 157 bits (399), Expect = 3e-43
Identities = 53/395 (13%), Positives = 110/395 (27%), Gaps = 72/395 (18%)
Query: 107 ELVHYAKL--RGVRVIFELDAPAHAGNGWQWGPRFGAYSPAKVYTPLEVQELVHYAKLRG 164
L + ++ G + G + T ++ +L++YAK +G
Sbjct: 51 MLDDMSITANGKTYASDDVKRAIEKGTNDYYNDPNGNH-----LTESQMTDLINYAKDKG 105
Query: 165 IRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDPSWRANCIQPPCGQLNPINPHVYTVL 224
I +I +++P H G+ + + ++ N
Sbjct: 106 IGLIPTVNSPGHMDAILNAMKELGI--------QNPNFSYFGKKSARTVDLDNEQAVAFT 157
Query: 225 KDIYGELMGMAKYGDEMFHMGADELVTLMALCRWQMCTRQQVPCVQPISGVDHLSPHLWT 284
K + + E+F++G DE
Sbjct: 158 KALIDKYAAYFAKKTEIFNIGLDEYAND-------------------------------A 186
Query: 285 VFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSH 344
K W+ A + ++ +I + N A + H K + ++
Sbjct: 187 TDAKGWSVLQADKYYPNEGYPVKGYEKFI----AYANDLARIVKS---HGL-KPMAFNDG 238
Query: 345 LTDPEIILNYLDPKRYIIQTW----VPRIDPLADLLISKGYQVIISTKDAWYLDH----- 395
+ K I+ W + LL KG+Q++ + +Y+
Sbjct: 239 IYYNSDTSFGSFDKDIIVSMWTGGWGGYDVASSKLLAEKGHQILNTNDAWYYVLGRNADG 298
Query: 396 --GFWGVTSYYRWQRVYDNLLPSS----PLVLGGEVAMWTEYVDDQSLDGRLWP--RTAA 447
+ + +P + ++GG VA W + + RL+ R A
Sbjct: 299 QGWYNLDQGLNGIKNTPITSVPKTEGADIPIIGGMVAAWADTPSARYSPSRLFKLMRHFA 358
Query: 448 AAERLWSNPKSSS-SEAETRFLEQRERLVEMGIRA 481
A + S +A + R + A
Sbjct: 359 NANAEYFAADYESAEQALNEVPKDLNRYTAESVTA 393
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis,
A/B(TIM)-barrel, site directed mutagenesis; HET: CBS;
1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3
c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Length = 858
Score = 157 bits (398), Expect = 2e-41
Identities = 65/396 (16%), Positives = 117/396 (29%), Gaps = 79/396 (19%)
Query: 148 YTPLEVQELVHYAKLRGIRVIFELDAPAHA----------------GNGWQWGPRYGLGD 191
++ + +++ YA+ R I VI E+D PAHA Q + L D
Sbjct: 397 FSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEARYKKLHAAGKEQEANEFRLVD 456
Query: 192 LIVCLNDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGM---AKYGDEMFHMGADE 248
N S + Q LNP + + GE+ M A + +H G E
Sbjct: 457 QTDTSNTTSVQFFNRQSY---LNPCLDSSQRFVDKVIGEIAQMHKEAGQPIKTWHFGGAE 513
Query: 249 LVTLMALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTT 308
R + K W + +
Sbjct: 514 AKN----------IRLGAGYTDKAKPEPGKGIIDQSNEDKPWAKSQVCQTMIKEGK---- 559
Query: 309 FDDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVP- 367
D L ++F + + + H ++ W L D E R + W
Sbjct: 560 VADMEHLPSYFGQEVSKLVKA---HGIDRMQAWQDGLKDAE-SSKAFATSRVGVNFWDTL 615
Query: 368 --RIDPLADLLISKGYQVIISTKDAWYLDH---------GFWGVTSYYRWQRVYDNLLPS 416
+ +KGY+V++S D Y+D G++ T + ++V+ +
Sbjct: 616 YWGGFDSVNDWANKGYEVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDERKVFSFAPDN 675
Query: 417 SPL-----------------------VLGGEVAMWTEYVDDQS-LDGRLWPRTAAAAERL 452
P G +W+E ++ ++PR + AER
Sbjct: 676 MPQNAETSVDRDGNHFNAKSDKPWPGAYGLSAQLWSETQRTDPQMEYMIFPRALSVAERS 735
Query: 453 WSNPKSSSSEAETRFLEQRERLVEMGIRAEVTTPEW 488
W E + R + + + + +W
Sbjct: 736 WHRA---GWEQDYRAGREYKGGETHFVDTQALEKDW 768
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus
pneumoniae} PDB: 2yla_A* 2yl9_A*
Length = 442
Score = 138 bits (350), Expect = 2e-36
Identities = 46/368 (12%), Positives = 101/368 (27%), Gaps = 80/368 (21%)
Query: 116 GVRVIFELDAPAHAGNGWQWGPRFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPA 175
++ G + G T EV EL+ YAK + I +I +++P
Sbjct: 65 KTYASDDVKKAIIEGTKAYYDDPNGTA-----LTQAEVTELIEYAKSKDIGLIPAINSPG 119
Query: 176 HAGNGWQWGPRYGLGDLIVCLNDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMA 235
H + G+ + + S ++ N +K + G+ M
Sbjct: 120 HMDAMLVAMEKLGIKNPQAHFDKVSKTT---------MDLKNEEAMNFVKALIGKYMDFF 170
Query: 236 KYGDEMFHMGADELVTLMALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPA 295
++F+ G DE +
Sbjct: 171 AGKTKIFNFGTDE------------------------------------YANDATSAQGW 194
Query: 296 IVDFMLAHGKNTTFDDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYL 355
+ + A + N AA E + + ++ +
Sbjct: 195 YYL-----KWYQLYGKF----AEYANTLAAMAKE---RGL-QPMAFNDGFYYEDKDDVQF 241
Query: 356 DPKRYIIQTW----VPRIDPLADLLISKGYQVIISTKDAWYLDHGFWGVTSYYRWQRVYD 411
K +I W L SKGY+ + + D +Y+ + + + +
Sbjct: 242 -DKDVLISYWSKGWWGYNLASPQYLASKGYKFLNTNGDWYYILGQKPEDGGGFLKKAIEN 300
Query: 412 ------NLLPSS------PLVLGGEVAMWTEYVDDQSLDGRLWPRTAAAAERLWSNPKSS 459
N L S+ +G +++W + + + ++ A A+ +++
Sbjct: 301 TGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFADHNKDYFRAN 360
Query: 460 SSEAETRF 467
+
Sbjct: 361 YNALREEL 368
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20,
GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X
2epm_X 2epn_A* 2epo_A
Length = 627
Score = 90.4 bits (224), Expect = 2e-19
Identities = 49/334 (14%), Positives = 88/334 (26%), Gaps = 67/334 (20%)
Query: 137 PRFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCL 196
P FG + YT E+QE+ YA + + + AH +WG
Sbjct: 133 PYFGYFRGR--YTVAELQEIEDYAADFDMSFVPCIQTLAHLSAFVKWGI----------- 179
Query: 197 NDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALC 256
++ L VY +++ ++ + ++G DE +
Sbjct: 180 ----KEVQELRDVEDILLIGEEKVYDLIEGMFQTMA---HLHTRKINIGMDEAHLVGLGR 232
Query: 257 RWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLW 316
Q + HL ++D +G N Q+W
Sbjct: 233 YLIKHGFQNRSLLM----CQHLE---------------RVLDIADKYGFN------CQMW 267
Query: 317 AHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLD--PKRYIIQTWVPRIDPLAD 374
+ + + + PE YLD +R + W D
Sbjct: 268 -----------SDMFFKLMSADGQYDRDVEIPEETRVYLDRLKERVTLVYWDYYQDSEEK 316
Query: 375 LLISKGYQVIISTKDAWYLDHGFWGVTSYY-RWQRVYDNLLPSSP-----LVLGGEVAMW 428
+ +Q G W + + ++ V V W
Sbjct: 317 YN--RNFQNHHKISQDIAFAGGAWKWIGFTPHNHFSRLVAIEANKACRKNQVKEVIVTGW 374
Query: 429 TEYVDDQSLDGRLWPRTAAAAERLWSNPKSSSSE 462
+ + S + P AE + N SE
Sbjct: 375 GDNGGETSQF-SVLPALQIWAELAYRNDLKKVSE 407
Score = 48.1 bits (114), Expect = 5e-06
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 89 PRFGAYSPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAHAGNGWQWGPRFGA 141
P FG + YT E+QE+ YA + + + AH +WG +
Sbjct: 133 PYFGYFRGR--YTVAELQEIEDYAADFDMSFVPCIQTLAHLSAFVKWGIKEVQ 183
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 5e-05
Identities = 31/248 (12%), Positives = 65/248 (26%), Gaps = 80/248 (32%)
Query: 299 FMLAHGK-NTTF----DDYI---QLWAHFQNKAAASLDEAVGHNR--------TKLIVWS 342
L+HG + QL F + + K + +
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 343 SHLTDP----------EIILNYLDPKRYI----IQTWVPRIDPLADLLISKGYQVIISTK 388
S L +P + L + Y+ I ++ D + K ++I
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDIHALAAKLLQENDTTLVKTKELI---- 123
Query: 389 DAWYLDHGFWGVTSYYR----WQRVYDNLLPSSPL------------VLGG----EVAMW 428
+Y +R +D S+ + GG +
Sbjct: 124 ------------KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD---- 167
Query: 429 TEYVDD-QSL----DGRLWPRTAAAAERLWSNPKSSSSEAETRFLEQRERLVEMGIRAEV 483
+Y ++ + L + +AE L + + + + + +
Sbjct: 168 -DYFEELRDLYQTYHVLVGDLIKFSAETLSE---LIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 484 TTPEWCYL 491
TP+ YL
Sbjct: 224 NTPDKDYL 231
Score = 40.4 bits (94), Expect = 0.001
Identities = 77/558 (13%), Positives = 149/558 (26%), Gaps = 197/558 (35%)
Query: 2 SSFDDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYL-------DPQT 54
+SF QL F + + ++ E++ +L +P
Sbjct: 25 ASFFIASQLQEQFNKILPEPTEGFAADDEP-----TT---PAELVGKFLGYVSSLVEPSK 76
Query: 55 CG-TQQVVREPL---------------LLVTLMALCRWQMCTRQQVPCLLPRFGAYSPAK 98
G QV+ L L L+ + +++ Y A+
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL------IKNYITAR 130
Query: 99 VYTPLEVQELVHYAKLRGVRVIFELDAPAHA-----GNGWQWGPRF----GAYSPAKVYT 149
+ + + A R V E +A A GN + F Y + Y
Sbjct: 131 IMAKRPFDKKSNSALFRAVG---EGNAQLVAIFGGQGNTDDY---FEELRDLY---QTYH 181
Query: 150 PLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLG-DLIVCLNDPSWRANCIQP 208
L V +L+ ++ + EL + G +++ L +PS P
Sbjct: 182 VL-VGDLIKFS----AETLSELIRTTLDAE-----KVFTQGLNILEWLENPS-----NTP 226
Query: 209 PCGQLN--PIN-P--------HVYTVLK-------DIYGELMGMAKYGD----------- 239
L PI+ P H K ++ L G +
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 240 ---EMFHMGADELVTLMAL--CRWQMCTRQQ----------------VPCVQPISGVDHL 278
E F + + +T++ R VP P+ + +L
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS--PMLSISNL 344
Query: 279 SPHLWTVFIKCWN--------------NTPAIVDFMLA------HGKNTTFDDYIQLWAH 318
+ ++ N N + +++ +G N T
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAK--NLVVSGPPQSLYGLNLTLRKA------ 396
Query: 319 FQNKAAASLDEA-VGHNRTKLIVWSSHLTDPEIIL----NYLDPKRYIIQTWVPRID--- 370
KA + LD++ + + KL + L P + + L P +I + + +
Sbjct: 397 ---KAPSGLDQSRIPFSERKLKFSNRFL--P-VASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 371 PLADLLISKGYQVIISTKDAWYLDHGFWGVTSYYRWQRVYDNLLPSSPLVLGGEVAMWTE 430
D+ I + T D + + ++ +V +
Sbjct: 451 NAKDIQIP-----VYDTFDG-------------SDLRVLSGSISER--IV----DCIIRL 486
Query: 431 YVDDQSLDGRLWPRTAAA 448
V W T
Sbjct: 487 PVK--------WETTTQF 496
Score = 33.9 bits (77), Expect = 0.17
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 29/111 (26%)
Query: 18 AAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPQTCGTQQVVREPLLLVTLMALCRWQ 77
A + V S D ++ + + ++R P +W+
Sbjct: 451 NAKDIQIPVYDTFD----GS----DLRVLSGSISERIV--DCIIRLP---------VKWE 491
Query: 78 MCTRQQVPCLLPRFGAYSPAKVYTPLEVQELVHYAKL-RGVRVIF--ELDA 125
T+ + +L FG P + L H K GVRVI LD
Sbjct: 492 TTTQFKATHILD-FG---PGGA---SGLGVLTHRNKDGTGVRVIVAGTLDI 535
Score = 33.5 bits (76), Expect = 0.22
Identities = 35/198 (17%), Positives = 62/198 (31%), Gaps = 59/198 (29%)
Query: 9 QLW----AHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNY--LDPQTCGTQQVVR 62
+W HF++ S+ + V +N L + I NY + +T ++
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 63 EPLL--LVTLMALCRWQ------MCTR-QQVPCLLPRFGAYSPAKVYTPLEVQELVHYAK 113
E + + ++ T+ Q P L L+ A
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQFTQ-PALT-------------------LMEKAA 1743
Query: 114 LRGVRVIFELDAPAH-AGNGWQWGPRF---GAYS----PAKVYTPLE-VQELVHYAKLRG 164
++ + A A AG G Y+ A V +E + E+V Y RG
Sbjct: 1744 FEDLKSKGLIPADATFAG---------HSLGEYAALASLADVM-SIESLVEVVFY---RG 1790
Query: 165 --IRVIFELDAPAHAGNG 180
++V D + G
Sbjct: 1791 MTMQVAVPRDELGRSNYG 1808
Score = 29.6 bits (66), Expect = 3.3
Identities = 36/267 (13%), Positives = 79/267 (29%), Gaps = 64/267 (23%)
Query: 155 ELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDPSWRANCIQPPCGQLN 214
+L Y + + ++ A H + YG L + +N+P G+
Sbjct: 1634 DL--YKTSKAAQDVWN-RADNH------FKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 215 PIN--PHVYTVLKDIYGELMGMAKYGDE-----MFHMGADELVTLMALCRWQMCTR-QQV 266
N ++ + D + + K +E F L++ T+ Q
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-SEKGLLSA---------TQFTQ- 1733
Query: 267 PCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLA-H--GKNT---------TFDDYIQ 314
P + + + +K PA D A H G+ + + ++
Sbjct: 1734 PALTLMEKA------AFED-LKSKGLIPA--DATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 315 LWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLAD 374
+ ++ R+ + + +P + + +Q V R+
Sbjct: 1785 V-VFYRGMTMQVAVPRDELGRSNYGMIA---INPGRVAASFSQE--ALQYVVERVGKRTG 1838
Query: 375 LLI------SKGYQVIIS-TKDAWYLD 394
L+ + Q + + A LD
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRA--LD 1863
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-04
Identities = 53/395 (13%), Positives = 106/395 (26%), Gaps = 131/395 (33%)
Query: 5 DD--YIQLWAHFQNKA-------AASLDEAVGHNRTKLIVWSSH---LTDPE---IILNY 49
+ + W F + + + T I H LT E ++L Y
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 50 LD-------PQTCGTQQVVREPLLLVTLMALCR--------WQMCTRQQVPCLLPRFGAY 94
LD + T P L + R W+ ++ ++
Sbjct: 311 LDCRPQDLPREVLTTN-----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--- 362
Query: 95 SPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAHAGNGWQWGPRFGAYSPAKVYTPL--- 151
V P E +++ + +L +F A P + + +
Sbjct: 363 --LNVLEPAEYRKM--FDRL----SVFPPSAHI----------------PTILLSLIWFD 398
Query: 152 ----EVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIV-----CLNDPSWR 202
+V +V+ KL ++ + + + N+ +
Sbjct: 399 VIKSDVMVVVN--KLHKYSLV----------EKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 203 ANCIQP-------PCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMAL 255
+ + L P Y Y + H+ E M L
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQY-----FYSHIG---------HHLKNIEHPERMTL 492
Query: 256 C-------RW--QMCTRQQVPCVQPISGVDHLSP-HLWTVFIKCWNNTP-------AIVD 298
R+ Q S ++ L + +I +N P AI+D
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC--DNDPKYERLVNAILD 550
Query: 299 FMLAHGKN---TTFDDYIQLWAHFQNKAAASLDEA 330
F+ +N + + D +++ + A +EA
Sbjct: 551 FLPKIEENLICSKYTDLLRI--ALMAEDEAIFEEA 583
Score = 42.1 bits (98), Expect = 5e-04
Identities = 61/417 (14%), Positives = 108/417 (25%), Gaps = 122/417 (29%)
Query: 143 SPAKVYTPLEVQELVHYA-KLRGIRVIFE--LDAP----------AHAGN-GWQWGP--- 185
P + + E+ ++ + G +F L N + P
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 186 ----RYGLGDLIVCLNDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGEL---MGMAKYG 238
+ + + D + N + N Y L+ EL + G
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDN---QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 239 DEMFHMGADELVTLMALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVD 298
+ G T +AL +C +V C + W C N+P V
Sbjct: 158 --VLGSGK----TWVAL---DVCLSYKVQCKMD-FKI------FWLNLKNC--NSPETVL 199
Query: 299 FMLAHGKNTTFDDYIQLWAHFQN--KAAASLDEAV-------GHNRTKLI---VWSSHLT 346
ML ++ H N S+ + + L+ V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----- 254
Query: 347 DPEIILNYLDPK-RYIIQTWVPRIDPLADLLISKGYQVIISTKDAWYLDHGFWGVTSYY- 404
+ + N + + ++ T R + D L + I LDH +T
Sbjct: 255 NAKAW-NAFNLSCKILLTT---RFKQVTDFLSAATTTHIS-------LDHHSMTLTPDEV 303
Query: 405 -----RWQRVYDNLLPS-----SPLVLG--GE-----VAMWTEY----------VDDQSL 437
++ LP +P L E +A W + + + SL
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 438 DGRLWPR------------------TAAAAERLWSNPKSSSSEAETRFLEQRERLVE 476
+ L P +W + S L + LVE
Sbjct: 364 N-VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVE 418
Score = 34.1 bits (77), Expect = 0.13
Identities = 79/507 (15%), Positives = 137/507 (27%), Gaps = 170/507 (33%)
Query: 29 NRTKLIVWSSHLTDPEIILNYLDPQTCGTQQVVREPL-----LLVTLMALCRWQMCTRQQ 83
+ T + W L L Q Q+ V E L L++ + RQ
Sbjct: 62 SGTLRLFW---------TL--LSKQEEMVQKFVEEVLRINYKFLMS-----PIKTEQRQ- 104
Query: 84 VPCLLP------RFGAYSPAKVYTPLEVQELVHYAKLRGVRVIFELDAPA-----H--AG 130
P ++ R Y+ +V+ V L Y KLR + + EL PA G
Sbjct: 105 -PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR--QALLELR-PAKNVLIDGVLG 160
Query: 131 NGWQW-------------GPRFGAY--SPAKVYTPLEV----QELVHYAKLRGIRVIFEL 171
+G W F + + +P V Q+L++
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 172 DAPAHAGNGWQWGPRYGLGD------LIVCLNDPSWRANCIQP---PC------------ 210
+ Q R L L+V L + A C
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLV-LLN-VQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 211 GQLNPINPHVYTVLKDIYG----ELMGM-AKYGDEMFHMGADEL-----------VTLMA 254
L+ ++ E+ + KY +L ++++A
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LDCRPQDLPREVLTTNPRRLSIIA 334
Query: 255 ------LCRWQMCTRQQVPCVQPI--SGVDHLSPHLW-------TVFIK----------- 288
L W + I S ++ L P + +VF
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 289 CWNNTPAIVDFMLA-----------HGKNTTF---DDYIQLWAHFQNKAA--ASLDEAV- 331
W + ++ K +T Y++L +N+ A S+ +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 332 ------GHNRTKLIV---WSS----HLTD----------PEIILNY--LDPK-RYIIQTW 365
+ + + S HL + + L++ L+ K R+ W
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 366 VPRIDPLADLLISKGYQVIISTKDAWY 392
L L K Y+ I D Y
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKY 541
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel;
1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB:
2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Length = 738
Score = 34.0 bits (77), Expect = 0.13
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 123 LDAPAHAGNGWQWGPRFGAYSPAKVYTPLEVQELVHYAKLRGIRVI 168
++ W + + Y +V+E+ YA +GI+++
Sbjct: 390 VEGWNEGWEDWFGNSKDYVFDFVTPYPDFDVKEIHRYAARKGIKMM 435
Score = 28.6 bits (63), Expect = 5.4
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 94 YSPAKVYTPLEVQELVHYAKLRGVRVI 120
+ Y +V+E+ YA +G++++
Sbjct: 409 FDFVTPYPDFDVKEIHRYAARKGIKMM 435
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif,
hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus
subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Length = 422
Score = 32.9 bits (75), Expect = 0.25
Identities = 37/322 (11%), Positives = 83/322 (25%), Gaps = 56/322 (17%)
Query: 137 PRFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPA-HAGNGWQWGPRYGLG----- 190
G T E +E+ A+ GI+VI +DA H +
Sbjct: 69 RYLG--------TEQEFKEMCAAAEEYGIKVI--VDAVINHTTFDYAAISNEVKSIPNWT 118
Query: 191 ---DLIVCLNDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYG---DEMFHM 244
I +D N N V + LK + G D H+
Sbjct: 119 HGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERALNDGADGFRFDAAKHI 178
Query: 245 GADELVTLMALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHG 304
+ + + + I ++ + +
Sbjct: 179 ELPDDGSYGSQFWPNITNTSAEFQYGEI-----------------LQDSASRDAAYANYM 221
Query: 305 KNTTFDDYIQLWAHFQNK--AAASLDEAVGH-NRTKLIVW-SSHLT--DPEIILNYLDPK 358
T + + + +N+ +++ + KL+ W SH T + + ++
Sbjct: 222 DVTASNYGHSIRSALKNRNLGVSNISHYASDVSADKLVTWVESHDTYANDDEESTWMSDD 281
Query: 359 RY-----IIQTWVPRIDPLADLLISKGYQVIISTKDAWYLDHGFWGVTSYYRWQRVYDNL 413
+I + P L + + ++ + Q + +
Sbjct: 282 DIRLGWAVIASR-SGSTP----LFFSRPEGGGNGVRFPGKSQIGDRGSALFEDQAIT-AV 335
Query: 414 LPSSPLVLGGEVAMWTEYVDDQ 435
++ G + ++Q
Sbjct: 336 NRFHNVMAGQPEELSNPQGNNQ 357
>1nyc_A Staphostatin B, cysteine protease inhibitor; SSPC, hydrolase
inhibitor; 1.40A {Staphylococcus aureus subsp} SCOP:
b.61.2.2 PDB: 1pxv_C 1y4h_C 1qwx_A
Length = 111
Score = 28.9 bits (64), Expect = 1.2
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
Query: 273 SGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWAHFQNKAAASLDEAVG 332
+ + HL +FI W+N + HG +T+ + Y L+ +D A
Sbjct: 16 TKLTHLEQTNINLFIGNWSNHQLQKSICIRHGDDTSHNQYHILF----------IDTA-- 63
Query: 333 HNRTKLIVWSSHLTDPEI--ILNYLDPKRYIIQT 364
H R K S + EI IL+Y D + ++QT
Sbjct: 64 HQRIKF----SSFDNEEIIYILDYDDTQHILMQT 93
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.6
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 454 SNPKSSSSEAET----RFLEQRERLVEMGIRAEVTTPEW 488
+ + E E+ R EQR+RL E+ ++V EW
Sbjct: 75 AQADRLTQEPESIRKWR-EEQRKRLQELDAASKVMEQEW 112
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 1.9
Identities = 27/207 (13%), Positives = 55/207 (26%), Gaps = 45/207 (21%)
Query: 151 LEVQELVHYAKLRGIRVIFEL-------DA-----PAHAGNGWQWGPRYGLGDL--IVCL 196
+ +L A G+ + + D PA G G R +
Sbjct: 1188 IMQADL---ALKMGVPIYGIVAMAATATDKIGRSVPA-PGKGILTTAREHHSSVKYASPN 1243
Query: 197 NDPSWRANCIQPPCGQLNP--------INPHV-YTVLKDIYGELMGMAKYGDEMFHMGAD 247
+ +R + Q+ + +D L+ +
Sbjct: 1244 LNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIHNEA----- 1298
Query: 248 ELVTLMALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNT 307
E A +W ++ P + P+ G + + T + HG +T
Sbjct: 1299 ESQLRAAQQQWGNDFYKRDPRIAPLRGA-----------LATYGLTIDDLGVASFHGTST 1347
Query: 308 TFDDYIQLWAHFQNKAAASLDEAVGHN 334
+D + N+ L + G+
Sbjct: 1348 KANDKNESATI--NEMMKHLGRSEGNP 1372
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase,
rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas
aeruginosa} SCOP: c.2.1.2
Length = 335
Score = 29.1 bits (66), Expect = 3.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 372 LADLLISKGYQV--II---STKDAWYLDH 395
LA LL+ KGY+V ++ S+ W L
Sbjct: 30 LAKLLLEKGYRVHGLVARRSSDTRWRLRE 58
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine
nucleotid structural genomics, NPPSFA; 2.80A {Thermus
thermophilus}
Length = 417
Score = 29.0 bits (66), Expect = 3.5
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 140 GAYSPAKVYTPL--EVQELVHYAKLRGIR 166
GA +P + V+E + +RG+R
Sbjct: 224 GAVAPYPMDEATLRRVEEEILGPLVRGLR 252
Score = 28.2 bits (64), Expect = 7.8
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 92 GAYSPAKVYTPL--EVQELVHYAKLRGVR 118
GA +P + V+E + +RG+R
Sbjct: 224 GAVAPYPMDEATLRRVEEEILGPLVRGLR 252
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase,
lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A
{Aquifex aeolicus} PDB: 2z95_A*
Length = 345
Score = 28.7 bits (65), Expect = 4.0
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 5/29 (17%)
Query: 372 LADLLISKGYQV--II---STKDAWYLDH 395
LA LL+ KGY+V +W L
Sbjct: 19 LAKLLLEKGYEVYGADRRSGEFASWRLKE 47
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1
c.30.1.1 d.142.1.2
Length = 412
Score = 29.0 bits (66), Expect = 4.3
Identities = 5/28 (17%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 140 GAYSPAKVYTP-LEVQELVHYAKLRGIR 166
G++ P ++ + ++ E + L G+
Sbjct: 233 GSWGPVEIPSDTIKKIEELFDKTLWGVE 260
Score = 27.8 bits (63), Expect = 8.3
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 92 GAYSPAKVYTP-LEVQELVHYAKLRGVR 118
G++ P ++ + ++ E + L GV
Sbjct: 233 GSWGPVEIPSDTIKKIEELFDKTLWGVE 260
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain
dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Length = 381
Score = 28.8 bits (65), Expect = 4.6
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 372 LADLLISKGYQV--II---STKDAWYLDH 395
L + L+ KGY+V +I S + ++H
Sbjct: 44 LTEFLLGKGYEVHGLIRRSSNFNTQRINH 72
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism,
hydrolase manganese; 1.85A {Escherichia coli} PDB:
2r8t_A 3bih_A 1ni9_A 3d1r_A*
Length = 338
Score = 28.4 bits (64), Expect = 5.0
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 9/41 (21%)
Query: 439 GRLWPRTAAAAERLWSNPKSSSSEAETRFLEQRERLVEMGI 479
GRL R + + ++ R MGI
Sbjct: 232 GRLLARHDVKGDNEENRRIGE---------QELARCKAMGI 263
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium,
rossman-fold, short-chain dehydrogenase/reductase, SDR,
structural genomics,lyase; HET: NDP GDP; 1.84A {Homo
sapiens} SCOP: c.2.1.2
Length = 375
Score = 28.4 bits (64), Expect = 5.1
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Query: 372 LADLLISKGYQV--II---STKDAWYLDH 395
LA+ L+ KGY+V I+ S+ + ++H
Sbjct: 40 LAEFLLEKGYEVHGIVRRSSSFNTGRIEH 68
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC,
PSI, protein structure initiative; 2.20A {Porphyromonas
gingivalis}
Length = 394
Score = 28.2 bits (63), Expect = 6.9
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 317 AHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTW 365
F KA +E + K I++S LT I I ++
Sbjct: 280 EIFIEKAVRRYEELRVDPKIKYIIFSDSLTPQRAIEIQKLCAGRIKASF 328
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A
{Escherichia coli} SCOP: c.2.1.2
Length = 372
Score = 28.0 bits (63), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 372 LADLLISKGYQV--II---STKDAWYLDH 395
LA+ L+ KGY+V I S+ + +DH
Sbjct: 17 LAEFLLEKGYEVHGIKRRASSFNTERVDH 45
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography; 2.15A {Ehrlichia chaffeensis}
Length = 442
Score = 27.8 bits (63), Expect = 8.8
Identities = 5/18 (27%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 92 GAYSPAKVYTPLEVQELV 109
G+YS + T E++ ++
Sbjct: 250 GSYSKPNIITQ-EMEHII 266
Score = 27.8 bits (63), Expect = 8.8
Identities = 5/18 (27%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 140 GAYSPAKVYTPLEVQELV 157
G+YS + T E++ ++
Sbjct: 250 GSYSKPNIITQ-EMEHII 266
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide
synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus
kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Length = 451
Score = 27.9 bits (63), Expect = 9.1
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 92 GAYSPAKVYTPLEVQELV 109
GAYSP + E+ +
Sbjct: 250 GAYSPVPQISD-EMMDAA 266
Score = 27.9 bits (63), Expect = 9.1
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 140 GAYSPAKVYTPLEVQELV 157
GAYSP + E+ +
Sbjct: 250 GAYSPVPQISD-EMMDAA 266
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal
binding; HET: ANP; 2.10A {Bacillus subtilis} PDB:
2xd4_A*
Length = 422
Score = 27.8 bits (63), Expect = 9.3
Identities = 6/18 (33%), Positives = 7/18 (38%), Gaps = 1/18 (5%)
Query: 92 GAYSPAKVYTPLEVQELV 109
GAYSP + E
Sbjct: 229 GAYSPVPQISE-ETVRHA 245
Score = 27.8 bits (63), Expect = 9.3
Identities = 6/18 (33%), Positives = 7/18 (38%), Gaps = 1/18 (5%)
Query: 140 GAYSPAKVYTPLEVQELV 157
GAYSP + E
Sbjct: 229 GAYSPVPQISE-ETVRHA 245
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide
synthetase, GAR synthetase, ATP B purine nucleotide
biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus}
PDB: 2yya_A
Length = 424
Score = 27.8 bits (63), Expect = 9.3
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 92 GAYSPAKVYTPLEVQELV 109
GAYSP V EV++ +
Sbjct: 229 GAYSPTPVINE-EVEKRI 245
Score = 27.8 bits (63), Expect = 9.3
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 140 GAYSPAKVYTPLEVQELV 157
GAYSP V EV++ +
Sbjct: 229 GAYSPTPVINE-EVEKRI 245
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.460
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,274,217
Number of extensions: 508901
Number of successful extensions: 1417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1355
Number of HSP's successfully gapped: 91
Length of query: 497
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 399
Effective length of database: 3,965,535
Effective search space: 1582248465
Effective search space used: 1582248465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)