RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14880
(497 letters)
>d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 353
Score = 168 bits (427), Expect = 2e-48
Identities = 87/354 (24%), Positives = 132/354 (37%), Gaps = 60/354 (16%)
Query: 138 RFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLN 197
G+YS + VYTP +V+ ++ YA+LRGIRV+ E D P H + + L
Sbjct: 57 NKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQKD---------LL 107
Query: 198 DPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCR 257
P + G +NP Y+ L + E+ + + D+ H+G DE
Sbjct: 108 TPCYSRQNKLDSFGPINPTLNTTYSFLTTFFKEISEV--FPDQFIHLGGDE--------- 156
Query: 258 WQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWA 317
V KCW + P I DFM G T F L +
Sbjct: 157 ---------------------------VEFKCWESNPKIQDFMRQKGFGTDFKK---LES 186
Query: 318 HFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLADLLI 377
+ K + N+ ++ ++ P + +
Sbjct: 187 FYIQKVLDIIAT---INKGSIVWQEVFDDKAKL-----APGTIVEVWKDSAYPEELSRVT 238
Query: 378 SKGYQVIISTKDAWYLDHGFWGVTSYYRWQRVYDNLLPS-SPLVLGGEVAMWTEYVDDQS 436
+ G+ VI+S L YY+ + + L +GGE +W EYVD +
Sbjct: 239 ASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATN 298
Query: 437 LDGRLWPRTAAAAERLWSNPKSSS-SEAETRFLEQRERLVEMGIRAEVTTPEWC 489
L RLWPR +A ERLWS+ +A R R R+VE GI A+ +C
Sbjct: 299 LTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 352
Score = 47.1 bits (111), Expect = 2e-06
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 88 LPRFGAYSPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAHAGNGWQW 135
L G+YS + VYTP +V+ ++ YA+LRG+RV+ E D P H + +
Sbjct: 55 LSNKGSYSLSHVYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKG 102
>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 362
Score = 165 bits (418), Expect = 3e-47
Identities = 89/362 (24%), Positives = 136/362 (37%), Gaps = 66/362 (18%)
Query: 138 RFGAYSPA-KVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCL 196
R G+Y+P +YT +V+E++ YA+LRGIRV+ E D P H + P L
Sbjct: 57 RKGSYNPVTHIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWGPGIP---------GL 107
Query: 197 NDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALC 256
P + + G +NP + Y + + E+ + + D H+G DE
Sbjct: 108 LTPCYSGSEPSGTFGPVNPSLNNTYEFMSTFFLEVSSV--FPDFYLHLGGDE-------- 157
Query: 257 RWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLW 316
V CW + P I DFM G F L
Sbjct: 158 ----------------------------VDFTCWKSNPEIQDFMRKKGFGEDFKQ---LE 186
Query: 317 AHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDP----L 372
+ + + + + +VW + IIQ W I
Sbjct: 187 SFYIQTLLDIVSS---YGK-GYVVWQEVFDN-----KVKIQPDTIIQVWREDIPVNYMKE 237
Query: 373 ADLLISKGYQVIISTKDAWYLDHGFWGVTSYYRWQRVYDNLLPS-SPLVLGGEVAMWTEY 431
+L+ G++ ++S +Y + + P LV+GGE MW EY
Sbjct: 238 LELVTKAGFRALLSAPWYLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMWGEY 297
Query: 432 VDDQSLDGRLWPRTAAAAERLWSNPKSSS-SEAETRFLEQRERLVEMGIRAEVTTPEWCY 490
VD+ +L RLWPR A AERLWSN +S + A R R L+ G++A+ +C
Sbjct: 298 VDNTNLVPRLWPRAGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCE 357
Query: 491 LN 492
Sbjct: 358 QE 359
>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase
(beta-N-acetylhexosaminidase) {Serratia marcescens
[TaxId: 615]}
Length = 443
Score = 146 bits (369), Expect = 2e-39
Identities = 62/370 (16%), Positives = 110/370 (29%), Gaps = 70/370 (18%)
Query: 140 GAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDP 199
G ++ + +++ YA+ R I VI E+D PAHA L +
Sbjct: 79 GPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSME-ARYKKLHAAGKEQ 137
Query: 200 SWRANCIQPPC--------------GQLNPINPHVYTVLKDIYGELMGM---AKYGDEMF 242
+ P LNP + + GE+ M A + +
Sbjct: 138 EANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIAQMHKEAGQPIKTW 197
Query: 243 HMGADELVTLMALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLA 302
H G DE + L + P I K W + +
Sbjct: 198 HFGGDE-AKNIRLGAGYTDKAKPEPGKGIID---------QGNEDKPWAKSQVCQTMIKE 247
Query: 303 HGKNTTFDDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYII 362
D L ++F + + + H ++ W L D E + + +
Sbjct: 248 GK----VADMEHLPSYFGQEVSKLVKA---HGIDRMQAWQDGLKDAESSKAFATSRVGVN 300
Query: 363 --QTWVPRIDPLADLLISKGYQVIISTKDAWYLDH---------GFWGVTSYYRWQRVYD 411
T + +KGY+V++S D Y+D G++ T + ++V+
Sbjct: 301 FWDTLYWGGFDSVNDWANKGYEVVVSNPDYVYMDFPYEVNPDERGYYWGTRFSDERKVFS 360
Query: 412 N-----------------------LLPSSPLVLGGEVAMWTEYV-DDQSLDGRLWPRTAA 447
P G +W+E D ++ ++PR +
Sbjct: 361 FAPDNMPQNAETSVDRDGNHFNAKSDKPWPGAYGLSAQLWSETQRTDPQMEYMIFPRALS 420
Query: 448 AAERLWSNPK 457
AER W
Sbjct: 421 VAERSWHRAG 430
>d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase
{Streptomyces plicatus [TaxId: 1922]}
Length = 356
Score = 126 bits (317), Expect = 6e-33
Identities = 70/360 (19%), Positives = 99/360 (27%), Gaps = 88/360 (24%)
Query: 136 GPRFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVC 195
G P YT E +E+V YA R + V+ E+D P H C
Sbjct: 60 GSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELN------C 113
Query: 196 LNDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMAL 255
+ L Y + D+ GEL + H+G DE
Sbjct: 114 DGVAPPLYTGTKVGFSSLCVDKDVTYDFVDDVIGELAAL--TPGRYLHIGGDE------- 164
Query: 256 CRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQL 315
+ F+K + +GK
Sbjct: 165 -------------------AHSTPKADFVAFMKRVQP------IVAKYGK---------- 189
Query: 316 WAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLADL 375
++ W L E + L + +T +A+
Sbjct: 190 ---------------------TVVGW-HQLAGAEPVEGALVQYWGLDRTGDAEKAEVAE- 226
Query: 376 LISKGYQVIISTKDAWYLDHGF-------WGVTSYYRWQRVYD----NLLPSSP--LVLG 422
G +I+S D YLD + Y QR YD LP +P V G
Sbjct: 227 AARNGTGLILSPADRTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPADAVRG 286
Query: 423 GEVAMWTEYVDDQS-LDGRLWPRTAAAAERLWSNP-KSSSSEAETRFLEQRERLVEMGIR 480
E +WTE + D LD +PR AE WS + R Q GI
Sbjct: 287 VEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSPASTHDWDTYKVRLAAQAPYWEAAGID 346
Score = 46.0 bits (108), Expect = 6e-06
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 88 LPRFGAYS-----PAKVYTPLEVQELVHYAKLRGVRVIFELDAPAHAGNGWQWGPRFGA 141
L +G + P YT E +E+V YA R + V+ E+D P H
Sbjct: 55 LATYGGSTEVGGGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAELNC 113
>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus
actinomycetemcomitans [TaxId: 714]}
Length = 344
Score = 120 bits (302), Expect = 5e-31
Identities = 40/336 (11%), Positives = 92/336 (27%), Gaps = 77/336 (22%)
Query: 136 GPRFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVC 195
G Y+ + ++ ++ YAK +GI +I ELD+P H ++ +
Sbjct: 65 GIYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQK--------D 116
Query: 196 LNDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMAL 255
+ + +++ N T ++ + E++ + + FH+G DE
Sbjct: 117 RGVKYLQGLKSRQVDDEIDITNADSITFMQSLMSEVIDIFGDTSQHFHIGGDE----FGY 172
Query: 256 CRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQL 315
+ + F+ G ++
Sbjct: 173 SVESNH--------------------------EFITYANKLSYFLEKKGLK------TRM 200
Query: 316 WAH-FQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLAD 374
W ++ + ++ WS + +
Sbjct: 201 WNDGLIKNTFEQINPNI-----EITYWSYDGDTQD----------KNEAAERRDMRVSLP 245
Query: 375 LLISKGYQVIISTKDAWYLDHG----------FWGVTSYYRWQRVY------DNLLPSSP 418
L++KG+ V+ Y+ F W N + ++
Sbjct: 246 ELLAKGFTVLNYNSYYLYIVPKASPTFSQDAAFAAKDVIKNWDLGVWDGRNTKNRVQNTH 305
Query: 419 LVLGGEVAMWTEYVDDQSLDGRLWPRTAAAAERLWS 454
+ G +++W E D + T + E +
Sbjct: 306 EIAGAALSIWGEDAKALK-DETIQKNTKSLLEAVIH 340
>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea
[TaxId: 489]}
Length = 554
Score = 39.2 bits (90), Expect = 0.001
Identities = 18/178 (10%), Positives = 44/178 (24%), Gaps = 14/178 (7%)
Query: 137 PRFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLG-----D 191
P G T +++E++ GI + + H N +W R G +
Sbjct: 157 PALG--------TIGDLREVIAALHEAGISAVVDF-IFNHTSNEHEWAQRCAAGDPLFDN 207
Query: 192 LIVCLNDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVT 251
D + +P ++ L+D + ++ +
Sbjct: 208 FYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWVWTTFNSFQWDLNYSNPWVFRA 267
Query: 252 LMALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTF 309
+ + + + ++ + + A M F
Sbjct: 268 MAGEMLFLANLGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAAPAVFF 325
Score = 32.6 bits (73), Expect = 0.11
Identities = 25/224 (11%), Positives = 48/224 (21%), Gaps = 14/224 (6%)
Query: 89 PRFGAYSPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAHAGNGWQWGPRFGAYSPAKVY 148
P G T +++E++ G+ + + H N +W R A P
Sbjct: 157 PALG--------TIGDLREVIAALHEAGISAVVDF-IFNHTSNEHEWAQRCAAGDPLFDN 207
Query: 149 TPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDPSWRANCIQP 208
+ + D + + G N W N P
Sbjct: 208 FYYIFPDRRMPDQYDRTLREIFPDQHPGGFSQLEDGRWV-----WTTFNSFQWDLNYSNP 262
Query: 209 PCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALCRWQMCTRQQVPC 268
+ L + +A +M + + + R P
Sbjct: 263 WVFRAMAGEMLFLANLGVDILRMDAVAFIWKQMGTSCENLPQAHALIRAFNAVMRIAAPA 322
Query: 269 VQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTFDDY 312
V S + + M +
Sbjct: 323 VFFKSEAIVHPDQVVQYIGQDECQIGYNPLQMALLWNTLATREV 366
>d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707
[TaxId: 1416]}
Length = 394
Score = 33.0 bits (74), Expect = 0.074
Identities = 37/274 (13%), Positives = 71/274 (25%), Gaps = 10/274 (3%)
Query: 124 DAPAHAGNGWQWGPRFGAYSPAKVY-TPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQ 182
D A + + G + Y T ++Q V K GI+V ++ H G
Sbjct: 51 DVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDV-VMNHKGGADA 109
Query: 183 WGPRYGLGDLIVCLNDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMF 242
+ N I+ P + ++ K + G+
Sbjct: 110 TEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFKWRWYHFDGVDWDQSRRL 169
Query: 243 HMGADELVTLMALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLA 302
+ + W++ T + +D P + +
Sbjct: 170 NNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNELRNWGVWYTNTLGLDGF 229
Query: 303 HGKNTTFDDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYII 362
D + F + A G N + + + D I NYL +
Sbjct: 230 R-----IDAVKHIKYSFTRDWINHVRSATGKNMFAVAEFWKN--DLGAIENYLQKTNWNH 282
Query: 363 Q-TWVPRIDPLADLLISKGYQVIISTKDAWYLDH 395
VP L + S G + + + +
Sbjct: 283 SVFDVPLHYNLYNASKSGGNYDMRNIFNGTVVQR 316
>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 403
Score = 31.4 bits (70), Expect = 0.24
Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 30/164 (18%)
Query: 89 PRFGAYSPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAHAGNGWQWGPRFGAYSPAKVY 148
R G E +++V GVR+ + H
Sbjct: 71 TRSG--------NENEFRDMVTRCNNVGVRIYVDA-VINHMCGSGAAAGTGTTCGSYCNP 121
Query: 149 TPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDPSWRANCIQP 208
E A ++ + G I NDP +C
Sbjct: 122 GN------------------REFPAVPYSAWDFNDGKCKTASGGIESYNDPYQVRDCQLV 163
Query: 209 PCGQLNPINPHVYTVLKDIYGELMGMAKYG---DEMFHMGADEL 249
L +V +++ D +L+ + G D HM ++
Sbjct: 164 GLLDLALEKDYVRSMIADYLNKLIDIGVAGFRIDASKHMWPGDI 207
>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm
(Tenebrio molitor), larva [TaxId: 7067]}
Length = 378
Score = 29.9 bits (66), Expect = 0.73
Identities = 35/259 (13%), Positives = 64/259 (24%), Gaps = 26/259 (10%)
Query: 126 PAHAGNGWQWGPRFGAYSPAKVY-TPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWG 184
G W + +Y ++ G+R+ + H G
Sbjct: 49 LVADGRPWWERYQPVSYIINTRSGDESAFTDMTRRCNDAGVRIYVDA-VINHMTGMNGVG 107
Query: 185 PRYGLGDL--------------------IVCLNDPSWRANCIQPPCGQLNPINPHVYTVL 224
D + D NC LN + +V VL
Sbjct: 108 TSGSSADHDGMNYPAVPYGSGDFHSPCEVNNYQDADNVRNCELVGLRDLNQGSDYVRGVL 167
Query: 225 KDIYGELMGMAKYG---DEMFHMGADELVTLMALCRWQMCTRQQVPCVQPISGVDHLSPH 281
D ++ + G D HM +L + + + +P + +
Sbjct: 168 IDYMNHMIDLGVAGFRVDAAKHMSPGDLSVIFSGLKNLNTDYGFADGARPFIYQEVIDLG 227
Query: 282 LWTVFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWAHFQNKAAASLDEAVGHNRTKLIVW 341
+ + +++F F QL + N +
Sbjct: 228 GEAISKNEYTGFGCVLEFQFGVSLGNAFQGGNQLK-NLANWGPEWGLLEGLDAVVFVDNH 286
Query: 342 SSHLTDPEIILNYLDPKRY 360
+ T IL Y +PK Y
Sbjct: 287 DNQRTGGSQILTYKNPKPY 305
>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera
(Bacillus amyloliquefaciens) and (Bacillus
licheniformis) [TaxId: 1390]}
Length = 393
Score = 29.2 bits (64), Expect = 1.1
Identities = 24/212 (11%), Positives = 57/212 (26%), Gaps = 10/212 (4%)
Query: 120 IFELDAPAHAGNGWQWGPRFGAYSPAKVYTPL-----EVQELVHYAKLRGIRVIFELDAP 174
++ + + G G G + E+Q+ + R ++V ++
Sbjct: 43 AYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDV-VL 101
Query: 175 AHAGNGWQWGPRYGLGDLIVCLNDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGM 234
H + N + I+ P + Y+ K + G
Sbjct: 102 NHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDG- 160
Query: 235 AKYGDEMFHMGADELVTLMALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIK---CWN 291
A + + + W++ + + VD+ P + K +
Sbjct: 161 ADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYA 220
Query: 292 NTPAIVDFMLAHGKNTTFDDYIQLWAHFQNKA 323
N ++ F + K+ F +
Sbjct: 221 NELSLDGFRIDAAKHIKFSFLRDWVQAVRQAT 252
>d1nyca_ b.61.2.2 (A:) Staphostatin B (SspC) {Staphylococcus aureus
[TaxId: 1280]}
Length = 111
Score = 27.8 bits (61), Expect = 1.2
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 18/82 (21%)
Query: 285 VFIKCWNNTPAIVDFMLAHGKNTTFDDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSH 344
+FI W+N + HG +T+ + Y L+ +D A H R K S
Sbjct: 28 LFIGNWSNHQLQKSICIRHGDDTSHNQYHILF----------IDTA--HQRIKF----SS 71
Query: 345 LTDPEI--ILNYLDPKRYIIQT 364
+ EI IL+Y D + ++QT
Sbjct: 72 FDNEEIIYILDYDDTQHILMQT 93
>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella
sp., lx3 [TaxId: 576]}
Length = 478
Score = 28.8 bits (63), Expect = 1.7
Identities = 31/303 (10%), Positives = 73/303 (24%), Gaps = 23/303 (7%)
Query: 137 PRFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCL 196
+G T + LV K R +R++ ++ + + +
Sbjct: 73 KEYG--------TMEDFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQSKSDKNNPYRD 124
Query: 197 NDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGM-AKYGDEMFHMGADELVTLMAL 255
QPP + + + A+ ++ L A+
Sbjct: 125 YYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLYAM 184
Query: 256 CRWQM------CTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTT- 308
R+ + V I G +L+P F + + P I ++ +
Sbjct: 185 LRFWLDKGVSGMRFDTVATYSKIPGFPNLTPEQQKNFAEQYTMGPNIHRYIQEMNRKVLS 244
Query: 309 -FDDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVP 367
+D +S + + + K + + +
Sbjct: 245 RYDVATAGEIFGVPLDRSSQFFDRRRHELNMAFMFDLIRLDRDSNERWRHKSWSLSQFRQ 304
Query: 368 RIDPLADLLISKGYQVIISTKDAWYLDHGFWGVTSYYRWQRVYDNL------LPSSPLVL 421
I + + G+ +G + L ++P +
Sbjct: 305 IISKMDVTVGKYGWNTFFLDNHDNPRAVSHFGDDRPQWREASAKALATITLTQRATPFIY 364
Query: 422 GGE 424
G
Sbjct: 365 QGS 367
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 255
Score = 28.0 bits (62), Expect = 2.4
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 321 NKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTW 365
K A + TK +V+S L P + Y + I ++
Sbjct: 154 EKTIAHYLKLGIDPLTKTLVFSDGLDLPRALKIYRALQGRINVSF 198
Score = 26.4 bits (58), Expect = 7.5
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 16 NKAAASLDEAVGHNRTKLIVWSSHLTDPEII 46
K A + TK +V+S L P +
Sbjct: 154 EKTIAHYLKLGIDPLTKTLVFSDGLDLPRAL 184
>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus
[TaxId: 1396]}
Length = 479
Score = 28.1 bits (61), Expect = 3.1
Identities = 19/186 (10%), Positives = 44/186 (23%), Gaps = 30/186 (16%)
Query: 89 PRFGAYSPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAHAGNGWQWGPRFGAYSPAKVY 148
FG T + EL+H R ++++ +L + + +
Sbjct: 73 NEFG--------TMEDWDELLHEMHERNMKLMMDLVVNHTSDEHNWFIESRKSKDNKY-- 122
Query: 149 TPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDPSWRANCIQP 208
R + WG + + +
Sbjct: 123 -----------------RDYYIWRPGKEGKEPNNWGAAFSGSAWQYDEMTDEYYLHLFSK 165
Query: 209 PCGQLNPINPHVYTVLKDIYGELMGMAKYG---DEMFHMGADELVTLMALCRWQMCTRQQ 265
LN N V + ++ + G D + + +E + + + +
Sbjct: 166 KQPDLNWDNEKVRQDVYEMMKFWLEKGIDGFRMDVINFISKEEGLPTVETEEEGYVSGHK 225
Query: 266 VPCVQP 271
P
Sbjct: 226 HFMNGP 231
>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas
amyloderamosa [TaxId: 32043]}
Length = 475
Score = 28.1 bits (61), Expect = 3.2
Identities = 11/82 (13%), Positives = 19/82 (23%)
Query: 141 AYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDPS 200
AY+ A E Q +V GI+V ++ A G + +
Sbjct: 101 AYNKAAGGPTAEFQAMVQAFHNAGIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDN 160
Query: 201 WRANCIQPPCGQLNPINPHVYT 222
+
Sbjct: 161 ATYYELTSGNQYFYDNTGIGAN 182
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 28.0 bits (62), Expect = 3.4
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 9/47 (19%)
Query: 137 PRFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQW 183
G E + L+ A G+ +I ++ P H
Sbjct: 60 DELG--------GEKEYRRLIETAHTIGLGIIQDI-VPNHMAVNSLN 97
Score = 27.6 bits (61), Expect = 4.5
Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 16/146 (10%)
Query: 89 PRFGAYSPAKVYTPLEVQELVHYAKLRGVRVIFELDAPAHAGNGWQW-----GPRFGAYS 143
G E + L+ A G+ +I ++ P H + G S
Sbjct: 60 DELG--------GEKEYRRLIETAHTIGLGIIQDI-VPNHMAVNSLNWRLMDVLKMGKKS 110
Query: 144 PAKVYTPLEVQELVHYAKLRG--IRVIFELDAPAHAGNGWQWGPRYGLGDLIVCLNDPSW 201
Y ++ + G + + +G ++ Y L +
Sbjct: 111 KYYTYFDFFPEDDKIRLPILGEDLDTVISKGLLKIVKDGDEYFLEYFKWKLPLTEVGNDI 170
Query: 202 RANCIQPPCGQLNPINPHVYTVLKDI 227
+ ++ NP Y D+
Sbjct: 171 YDTLQKQNYTLMSWKNPPSYRRFFDV 196
>d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 393
Score = 26.9 bits (58), Expect = 6.9
Identities = 27/228 (11%), Positives = 56/228 (24%), Gaps = 10/228 (4%)
Query: 131 NGWQWGPRFGAYSPAKVY-TPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGL 189
+ + G + Y T + + + A G++V ++ H G +
Sbjct: 61 DLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVV-FDHKGGADGTEWVDAV 119
Query: 190 GDLIVCLNDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADEL 249
N IQ P + Y+ K + G+
Sbjct: 120 EVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFKWRWYHFDGVDWDESRKLSRIYKFR 179
Query: 250 VTLMALCRWQMCTRQQVPCVQPISGVDHLSPHLWTVFIKCWNNTPAIVDFMLAHGKNTTF 309
W++ T + +D P + T +
Sbjct: 180 GI-GKAWDWEVDTENGNYDYLMYADLDMDHPEVVTELKSWGKWYVNTTNIDGFR-----L 233
Query: 310 DDYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDP 357
D + F + + G + + S+ D + NY+
Sbjct: 234 DAVKHIKFSFFPDWLSYVRSQTGKPLFTVGEYWSY--DINKLHNYIMK 279
>d1hi9a_ c.99.1.1 (A:) Zn-dependent D-aminopeptidase DppA {Bacillus
subtilis [TaxId: 1423]}
Length = 274
Score = 26.7 bits (59), Expect = 7.3
Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 13/122 (10%)
Query: 311 DYIQLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTW----- 365
+Y + +A + EA T+++V SH +++ L P+ +I
Sbjct: 27 NYERGRLIMTEEANYCIAEAFNSGCTEVLVNDSHSKMNNLMVEKLHPEADLISGDVKPFS 86
Query: 366 -VPRIDPLADLLISKGYQVIISTKDAWYLDHGFWGVTSYYRWQRVYDNLLPSSPLVLGGE 424
V +D + GY ST + H + + + Y N P L L
Sbjct: 87 MVEGLDDTFRGALFLGYHARASTPGV--MSH-----SMIFGVRHFYINDRPVGELGLNAY 139
Query: 425 VA 426
VA
Sbjct: 140 VA 141
>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix
orenii [TaxId: 31909]}
Length = 409
Score = 26.6 bits (57), Expect = 8.2
Identities = 36/323 (11%), Positives = 79/323 (24%), Gaps = 32/323 (9%)
Query: 137 PRFGAYSPAKVYTPLEVQELVHYAKLRGIRVIFELDAPAHAGNGWQWGPRYGLGDLIVCL 196
P +G T + +LV A RGI+VI +L + +
Sbjct: 76 PDYG--------TLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKAS--------- 118
Query: 197 NDPSWRANCIQPPCGQLNPINPHVYTVLKDIYGELMGMAKYGDEMFHMGADELVTLMALC 256
+ + + P T L F G +L
Sbjct: 119 ---RDKNSEYRDYYVWAGPDTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEV 175
Query: 257 RWQMCTRQQVPCVQPISGVD-HLSPHLWT--VFIKCWNNTPAIVDFMLAHGKNTTFDDYI 313
+ ++ + Q + G + H++ + K + + +
Sbjct: 176 QEKVIGIAKYWLKQGVDGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEVW 235
Query: 314 QLWAHFQNKAAASLDEAVGHNRTKLIVWSSHLTDPEIILNYLDPKRYIIQTWVPRIDPLA 373
+ D + ++ ++ P + V + +
Sbjct: 236 DISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDREVGFGNYID 295
Query: 374 DLLISKGYQVIISTKDAWYLDHGFWGVTSYYRWQRVYDNLLPSSPLVL-GGEVAMWTEYV 432
++ Q + + R LP +P + G E+ M +
Sbjct: 296 APFLTNHDQ--------NRILDQLGQDRNKARVAASIYLTLPGNPFIYYGEEIGMRGQGP 347
Query: 433 DDQSLDGRLWPRTAAAAERLWSN 455
+ + W + E W
Sbjct: 348 HEVIREPFQWYNGSGEGETYWEP 370
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.460
Gapped
Lambda K H
0.267 0.0370 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,075,856
Number of extensions: 101713
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 43
Length of query: 497
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 408
Effective length of database: 1,185,626
Effective search space: 483735408
Effective search space used: 483735408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.9 bits)