BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14881
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T8U|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
pdb|1T8U|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
Length = 272
Score = 261 bits (667), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 127/239 (53%), Positives = 163/239 (68%), Gaps = 35/239 (14%)
Query: 147 RNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSK 206
R+ MP TL+GQ+TM+KTPSYFVT+ P+R+ M+ KLIVVVRDPVTRAISDYTQ+ SK
Sbjct: 66 RDLMPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSK 125
Query: 207 KPEYLRKSFADLFYINGT-NVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIV 265
+P+ +F L + N T +++T W ++IG+YA++L+ WL++FP+ Q +F+SGE LI
Sbjct: 126 RPDI--PTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLIS 183
Query: 266 DPAAEMKRLQDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNT 325
DPA E+ R+QDFLGLK IIT+KHFYFN TKGFPC
Sbjct: 184 DPAGELGRVQDFLGLKRIITDKHFYFNKTKGFPC-------------------------- 217
Query: 326 TKGFPCLMKSETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTGIDFGW 384
L K+E + PHCLGK KGR HP+ID ++ RL +FYRPFNLKFYQMTG DFGW
Sbjct: 218 ------LKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTGHDFGW 270
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 96/118 (81%), Gaps = 2/118 (1%)
Query: 36 QASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDKNYVRGLSWYRNQMPLT 95
+ S+ LP A+IIGVKK GTRALLEF+++HP+V+A +E HFFD++Y +GL+WYR+ MP T
Sbjct: 13 EGSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDLMPRT 72
Query: 96 LEGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQ--SSRNQMP 151
L+GQ+TMEKTPSYFVT+ P+R+ M+ KLIVVVRDPVTRAISDYTQ S R +P
Sbjct: 73 LDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIP 130
>pdb|1T8T|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
pdb|1T8T|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
Length = 271
Score = 261 bits (666), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 127/239 (53%), Positives = 163/239 (68%), Gaps = 35/239 (14%)
Query: 147 RNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSK 206
R+ MP TL+GQ+TM+KTPSYFVT+ P+R+ M+ KLIVVVRDPVTRAISDYTQ+ SK
Sbjct: 65 RDLMPRTLDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSK 124
Query: 207 KPEYLRKSFADLFYINGT-NVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIV 265
+P+ +F L + N T +++T W ++IG+YA++L+ WL++FP+ Q +F+SGE LI
Sbjct: 125 RPDI--PTFESLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLIS 182
Query: 266 DPAAEMKRLQDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNT 325
DPA E+ R+QDFLGLK IIT+KHFYFN TKGFPC
Sbjct: 183 DPAGELGRVQDFLGLKRIITDKHFYFNKTKGFPC-------------------------- 216
Query: 326 TKGFPCLMKSETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTGIDFGW 384
L K+E + PHCLGK KGR HP+ID ++ RL +FYRPFNLKFYQMTG DFGW
Sbjct: 217 ------LKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTGHDFGW 269
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 96/118 (81%), Gaps = 2/118 (1%)
Query: 36 QASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDKNYVRGLSWYRNQMPLT 95
+ S+ LP A+IIGVKK GTRALLEF+++HP+V+A +E HFFD++Y +GL+WYR+ MP T
Sbjct: 12 EGSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDLMPRT 71
Query: 96 LEGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQ--SSRNQMP 151
L+GQ+TMEKTPSYFVT+ P+R+ M+ KLIVVVRDPVTRAISDYTQ S R +P
Sbjct: 72 LDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDIP 129
>pdb|3BD9|A Chain A, Human 3-O-Sulfotransferase Isoform 5 With Bound Pap
Length = 280
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 180/348 (51%), Gaps = 92/348 (26%)
Query: 39 RHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFD--KNYVRGLSWYRNQMPLTL 96
+ LP A+IIGV+K GTRALLE + LHP V S E+HFFD +NY +G+ WYR +MP +
Sbjct: 22 QQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDNDENYGKGIEWYRKKMPFSY 81
Query: 97 EGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEG 156
Q+T+EK+P+YF+T+ VP R+ KMN +KL+++VR+P TRAISDYTQ LEG
Sbjct: 82 PQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPTTRAISDYTQ--------VLEG 133
Query: 157 QMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFA 216
+ KT Y K + DP
Sbjct: 134 KERKNKT------------------YYKFEKLAIDP------------------------ 151
Query: 217 DLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQD 276
T VNT++ VR +Y ++L+ WLKYFP+ QF + G+ LI +P E++ ++
Sbjct: 152 ------NTCEVNTKYKAVRTSIYTKHLERWLKYFPIEQFHVVDGDRLITEPLPELQLVEK 205
Query: 277 FLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTKGFPCLMKSE 336
FL L I++ + YFN T+GF CL +E FN
Sbjct: 206 FLNLPPRISQYNLYFNATRGFYCLRFNEI-----------------FNK----------- 237
Query: 337 TLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTGIDFGW 384
CL +KGRIHP++D S++ +L +F+ PFN KFYQ+TG W
Sbjct: 238 ------CLAGSKGRIHPEVDPSVITKLRKFFHPFNQKFYQITGRTLNW 279
>pdb|3UAN|A Chain A, Crystal Structure Of 3-O-Sulfotransferase (3-Ost-1) With
Bound Pap And Heptasaccharide Substrate
pdb|3UAN|B Chain B, Crystal Structure Of 3-O-Sulfotransferase (3-Ost-1) With
Bound Pap And Heptasaccharide Substrate
Length = 269
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 166/350 (47%), Gaps = 95/350 (27%)
Query: 37 ASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFD--KNYVRGLSWYRNQMPL 94
+++ LP +IIGV+K GTRALLE + LHP+V A +E+HFFD ++Y +GL WY QMP
Sbjct: 12 STQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPF 71
Query: 95 TLEGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTL 154
+ Q+T+EKTP+YF + +VP R+ MNP ++L++++RDP R +SDYTQ N +
Sbjct: 72 SSPHQLTVEKTPAYFTSPKVPERIHSMNPTIRLLLILRDPSERVLSDYTQVLYNHL---- 127
Query: 155 EGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKS 214
+K PY +
Sbjct: 128 ----------------------QKHKPYPPI----------------------------- 136
Query: 215 FADLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRL 274
DL +G +N + + LY ++ WL++FPL + G+ LI DP E++++
Sbjct: 137 -EDLLMRDGR--LNLDYKALNRSLYHAHMLNWLRFFPLGHIHIVDGDRLIRDPFPEIQKV 193
Query: 275 QDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTKGFPCLMK 334
+ FL L I +FYFN TKGF CL S
Sbjct: 194 ERFLKLSPQINASNFYFNKTKGFYCLRDS------------------------------- 222
Query: 335 SETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTGIDFGW 384
CL ++KGR HP++D +LD+L +++ N KF+++ G F W
Sbjct: 223 ----GKDRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKFFKLVGRTFDW 268
>pdb|1VKJ|A Chain A, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
pdb|1VKJ|B Chain B, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
pdb|1VKJ|C Chain C, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
Length = 285
Score = 188 bits (478), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 166/350 (47%), Gaps = 95/350 (27%)
Query: 37 ASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFD--KNYVRGLSWYRNQMPL 94
+++ LP +IIGV+K GTRALLE + LHP+V A +E+HFFD ++Y +GL WY QMP
Sbjct: 28 STQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPF 87
Query: 95 TLEGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTL 154
+ Q+T+EKTP+YF + +VP R+ MNP ++L++++RDP R +SDYTQ N +
Sbjct: 88 SSPHQLTVEKTPAYFTSPKVPERIHSMNPTIRLLLILRDPSERVLSDYTQVLYNHL---- 143
Query: 155 EGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKS 214
+K PY +
Sbjct: 144 ----------------------QKHKPYPPI----------------------------- 152
Query: 215 FADLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRL 274
DL +G +N + + LY ++ WL++FPL + G+ LI DP E++++
Sbjct: 153 -EDLLMRDGR--LNLDYKALNRSLYHAHMLNWLRFFPLGHIHIVDGDRLIRDPFPEIQKV 209
Query: 275 QDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTKGFPCLMK 334
+ FL L I +FYFN TKGF CL S
Sbjct: 210 ERFLKLSPQINASNFYFNKTKGFYCLRDS------------------------------- 238
Query: 335 SETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTGIDFGW 384
CL ++KGR HP++D +LD+L +++ N KF+++ G F W
Sbjct: 239 ----GKDRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKFFKLVGRTFDW 284
>pdb|1ZRH|A Chain A, Crystal Structure Of Human Heparan Sulfate Glucosamine
3-O- Sulfotransferase 1 In Complex With Pap
Length = 274
Score = 185 bits (469), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 170/351 (48%), Gaps = 97/351 (27%)
Query: 37 ASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFD--KNYVRGLSWYRNQMPL 94
+++ LP +IIGV+K GTRALLE + LHP+V A +E+HFFD ++Y GL WY +QMP
Sbjct: 17 SAQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSHGLGWYLSQMPF 76
Query: 95 TLEGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTL 154
+ Q+T+EKTP+YF + +VP RV MNP ++L++++RDP R +SDYTQ N M
Sbjct: 77 SWPHQLTVEKTPAYFTSPKVPERVYSMNPSIRLLLILRDPSERVLSDYTQVFYNHM---- 132
Query: 155 EGQMTMKKTPSYFVTKRVPSRVKKMNPYVKL-IVVVRDPVTRAISDYTQSSSKKPEYLRK 213
+K PY + +VRD R DY L +
Sbjct: 133 ----------------------QKHKPYPSIEEFLVRD--GRLNVDYKA--------LNR 160
Query: 214 SFADLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKR 273
S L++++ N WL++FPL + G+ LI DP E+++
Sbjct: 161 S---LYHVHMQN--------------------WLRFFPLRHIHIVDGDRLIRDPFPEIQK 197
Query: 274 LQDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTKGFPCLM 333
++ FL L I +FYFN TKGF CL S
Sbjct: 198 VERFLKLSPQINASNFYFNKTKGFYCLRDS------------------------------ 227
Query: 334 KSETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTGIDFGW 384
CL ++KGR HP++D +L++L +++ N KF+++ G F W
Sbjct: 228 -----GRDRCLHESKGRAHPQVDPKLLNKLHEYFHEPNKKFFELVGRTFDW 273
>pdb|1NST|A Chain A, The Sulfotransferase Domain Of Human Haparin Sulfate N-
DeacetylaseN-Sulfotransferase
Length = 325
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 132/344 (38%), Gaps = 92/344 (26%)
Query: 41 LPDALIIGVKKSGTRALLEFIKLHPNVQA--PSSEMHFFDKNYVRGLSWYRNQMPLTLEG 98
P LIIG +K+GT AL F+ +HP++ + PSSE F + + G +++
Sbjct: 47 FPKLLIIGPQKTGTTALYLFLGMHPDLSSNYPSSET-FEEIQFFNGHNYH---------- 95
Query: 99 QMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQM 158
K ++ Y++ + P
Sbjct: 96 --------------------KGIDWYMEFFPI--------------------PSNTTSDF 115
Query: 159 TMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYT-QSSSKKPEYLRKSFAD 217
+K+ +YF ++ P R + P K++ ++ +P RA S Y Q + P L+ +F +
Sbjct: 116 YFEKSANYFDSEVAPRRAAALLPKAKVLTILINPADRAYSWYQHQRAHDDPVALKYTFHE 175
Query: 218 LFYINGTNVVNTRWGIVRI---GLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRL 274
+ R R G YA +++ WL + +Q + + G+ L +PA M +
Sbjct: 176 VITAGSDASSKLRALQNRCLVPGWYATHIERWLSAYHANQILVLDGKLLRTEPAKVMDMV 235
Query: 275 QDFLGL-KVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTKGFPCLM 333
Q FLG+ I K F+ KGF C + LE
Sbjct: 236 QKFLGVTNTIDYHKTLAFDPKKGFWC----QLLEG------------------------- 266
Query: 334 KSETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQM 377
CLGK+KGR +P++D L +YR N++ ++
Sbjct: 267 -----GKTKCLGKSKGRKYPEMDLDSRAFLKDYYRDHNIELSKL 305
>pdb|3RNL|A Chain A, Crystal Structure Of Sulfotransferase From
Alicyclobacillus Acidocaldarius
Length = 311
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 97/285 (34%), Gaps = 72/285 (25%)
Query: 42 PDALIIGVKKSGTRALLEFIKLHPNVQ-APSSEMHFFDKNYVRGLSWYRNQMPLTLEGQM 100
P+ I+G K GT +L ++ HP++ P E HF
Sbjct: 9 PNFFIVGAAKCGTSSLDRYLSQHPDIYIPPKKEAHF------------------------ 44
Query: 101 TMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQMTM 160
F P R + +RD + + ++ + G+ +
Sbjct: 45 --------FSIPDFPERFTGPGDEGXNLYTIRD----------EDAYXRLFDGVRGERAV 86
Query: 161 KKTPSYFV-TKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYT-------------QSSSK 206
+ +++ R P K+++ +R+PV RA S Y +S +K
Sbjct: 87 GEASVFYLFYPGTAQRXYDAYPDAKILIXLRNPVDRAFSAYXHLVRDERETLSFRESLAK 146
Query: 207 KPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVD 266
+ E +R+ + L+Y +GLYA + +L F Q I E D
Sbjct: 147 EEERIRQHYEPLWYYRA------------VGLYAAQVKRYLDVFGREQVKVILFEEFARD 194
Query: 267 PAAEMKRLQDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLG 311
P ++ FLG+ + G P KS +L +F+
Sbjct: 195 PVQVVRDCCAFLGVSTDFVPDTSIRHNESGVP---KSRSLYNFIA 236
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 45 LIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDKNYVRGLSWYRNQMPLTLEGQMTMEK 104
+++G G A+ E + LHP+ +E+ +++K +S+ + M L LEG++
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPD-----AEIQWYEKGDF--ISFLSSGMQLYLEGKVKDVN 56
Query: 105 TPSYFVTKRVPSR 117
+ Y +++ SR
Sbjct: 57 SVRYMTGEKMESR 69
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 45 LIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDKNYVRGLSWYRNQMPLTLEGQMTMEK 104
+++G G A+ E + LHP+ +E+ +++K +S+ M L LEG++
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPD-----AEIQWYEKGDF--ISFLSXGMQLYLEGKVKDVN 56
Query: 105 TPSYFVTKRVPSR 117
+ Y +++ SR
Sbjct: 57 SVRYMTGEKMESR 69
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 45 LIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDKNYVRGLSWYRNQMPLTLEGQMTMEK 104
+++G G A+ E + LHP+ +E+ +++K +S+ M L LEG++
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPD-----AEIQWYEKGDF--ISFLSXGMQLYLEGKVKDVN 56
Query: 105 TPSYFVTKRVPSR 117
+ Y +++ SR
Sbjct: 57 SVRYMTGEKMESR 69
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 45 LIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDKNYVRGLSWYRNQMPLTLEGQMTMEK 104
+++G G A+ E + LHP+ +E+ +++K +S+ M L LEG++
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPD-----AEIQWYEKGDF--ISFLSAGMQLYLEGKVKDVN 56
Query: 105 TPSYFVTKRVPSR 117
+ Y +++ SR
Sbjct: 57 SVRYMTGEKMESR 69
>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 472
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 23 ASPKYKFLRDENLQASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEM 74
A+ Y +L + + S ++ D + I K A +EF++ HP V + E+
Sbjct: 171 ATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGEV 222
>pdb|2Y3P|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
Antibiotic Simocyclinone D8
pdb|2Y3P|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
Antibiotic Simocyclinone D8
Length = 522
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 340 SPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTG 379
S +G G+ HP D ++ D + + +PF+L++ + G
Sbjct: 65 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDG 104
>pdb|1AB4|A Chain A, 59kda Fragment Of Gyrase A From E. Coli
Length = 493
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 340 SPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTG 379
S +G G+ HP D ++ D + + +PF+L++ + G
Sbjct: 37 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDG 76
>pdb|1Q1Q|A Chain A, Crystal Structure Of Human Pregnenolone Sulfotransferase
(Sult2b1a) In The Presence Of Pap
Length = 350
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 232 GIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLG 279
G V+ G + ++ WL+ F+FI+ E L D ++R+ FLG
Sbjct: 167 GEVQFGSWFDHIKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLG 214
>pdb|1Q1Z|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(Sult2b1b) In The Presence Of Pap
pdb|1Q20|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(Sult2b1b) In The Presence Of Pap And Pregnenolone
pdb|1Q22|A Chain A, Crystal Structure Of Human Cholesterol Sulfotransferase
(sult2b1b) In The Presence Of Dhea And Pap
Length = 299
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 232 GIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLG 279
G V+ G + ++ WL+ F+FI+ E L D ++R+ FLG
Sbjct: 169 GEVQFGSWFDHIKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLG 216
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 126 KLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPY 182
KL +V DP T A+ ++ S N + +GQ + P YF + S V+++N Y
Sbjct: 23 KLWTLVSDPDTDALICWSPSG-NSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMY 78
>pdb|4IFB|A Chain A, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
pdb|4IFB|B Chain B, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
Length = 285
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 26/152 (17%)
Query: 132 RDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRD 191
R P + YT S + P + ++ P F + + K+I ++R+
Sbjct: 74 RSPWVESEIGYTALSETESPRLFSSHLPIQLFPKSFFSSKA-----------KVIYLMRN 122
Query: 192 PVTRAISDY----TQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWL 247
P +S Y KKP+ + F ++ GT V G + ++ W+
Sbjct: 123 PRDVLVSGYFFWKNMKFIKKPKSWEEYFE--WFCQGT---------VLYGSWFDHIHGWM 171
Query: 248 KYFPLSQFIFISGETLIVDPAAEMKRLQDFLG 279
F+ +S E L D ++++ FLG
Sbjct: 172 PMREEKNFLLLSYEELKQDTGRTIEKICQFLG 203
>pdb|2QP4|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 26/152 (17%)
Query: 132 RDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRD 191
R P + YT S + P + ++ P F + + K+I ++R+
Sbjct: 73 RSPWVESEIGYTALSETESPRLFSSHLPIQLFPKSFFSSKA-----------KVIYLMRN 121
Query: 192 PVTRAISDY----TQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWL 247
P +S Y KKP+ + F ++ GT V G + ++ W+
Sbjct: 122 PRDVLVSGYFFWKNWKFIKKPKSWEEYFE--WFCQGT---------VLYGSWFDHIHGWM 170
Query: 248 KYFPLSQFIFISGETLIVDPAAEMKRLQDFLG 279
F+ +S E L D ++++ FLG
Sbjct: 171 PMREEKNFLLLSYEELKQDTGRTIEKICQFLG 202
>pdb|3F3Y|A Chain A, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|B Chain B, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|C Chain C, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|D Chain D, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
Length = 285
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 26/152 (17%)
Query: 132 RDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRD 191
R P + YT S + P + ++ P F + + K+I ++R+
Sbjct: 74 RSPWVESEIGYTALSETESPRLFSSHLPIQLFPKSFFSSKA-----------KVIYLMRN 122
Query: 192 PVTRAISDY----TQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWL 247
P +S Y KKP+ + F ++ GT V G + ++ W+
Sbjct: 123 PRDVLVSGYFFWKNMKFIKKPKSWEEYFE--WFCQGT---------VLYGSWFDHIHGWM 171
Query: 248 KYFPLSQFIFISGETLIVDPAAEMKRLQDFLG 279
F+ +S E L D ++++ FLG
Sbjct: 172 PMREEKNFLLLSYEELKQDTGRTIEKICQFLG 203
>pdb|1OV4|A Chain A, Crystal Structure Of Human Dhea-st Complexed With
Androsterone
Length = 293
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 26/152 (17%)
Query: 132 RDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRD 191
R P + YT S + P + ++ P F + + K+I ++R+
Sbjct: 82 RSPWVESEIGYTALSETESPRLFSSHLPIQLFPKSFFSSKA-----------KVIYLMRN 130
Query: 192 PVTRAISDY----TQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWL 247
P +S Y KKP+ + F ++ GT V G + ++ W+
Sbjct: 131 PRDVLVSGYFFWKNMKFIKKPKSWEEYFE--WFCQGT---------VLYGSWFDHIHGWM 179
Query: 248 KYFPLSQFIFISGETLIVDPAAEMKRLQDFLG 279
F+ +S E L D ++++ FLG
Sbjct: 180 PMREEKNFLLLSYEELKQDTGRTIEKICQFLG 211
>pdb|1J99|A Chain A, Crystal Structure Of Human Dehydroepiandrosterone
Sulfotransferase In Complex With Substrate
Length = 293
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 26/152 (17%)
Query: 132 RDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRD 191
R P + YT S + P + ++ P F + + K+I ++R+
Sbjct: 82 RSPWVESEIGYTALSETESPRLFSSHLPIQLFPKSFFSSKA-----------KVIYLMRN 130
Query: 192 PVTRAISDY----TQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWL 247
P +S Y KKP+ + F ++ GT V G + ++ W+
Sbjct: 131 PRDVLVSGYFFWKNMKFLKKPKSWEEYFE--WFCQGT---------VLYGSWFDHIHGWM 179
Query: 248 KYFPLSQFIFISGETLIVDPAAEMKRLQDFLG 279
F+ +S E L D ++++ FLG
Sbjct: 180 PMREEKNFLLLSYEELKQDTGRTIEKICQFLG 211
>pdb|1EFH|A Chain A, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
pdb|1EFH|B Chain B, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
Length = 292
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 26/152 (17%)
Query: 132 RDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRD 191
R P + YT S + P + ++ P F + + K+I ++R+
Sbjct: 74 RSPWVESEIGYTALSETESPRLFSSHLPIQLFPKSFFSSKA-----------KVIYLMRN 122
Query: 192 PVTRAISDY----TQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWL 247
P +S Y KKP+ + F ++ GT V G + ++ W+
Sbjct: 123 PRDVLVSGYFFWKNMKFIKKPKSWEEYFE--WFCQGT---------VLYGSWFDHIHGWM 171
Query: 248 KYFPLSQFIFISGETLIVDPAAEMKRLQDFLG 279
F+ +S E L D ++++ FLG
Sbjct: 172 PMREEKNFLLLSYEELKQDTGRTIEKICQFLG 203
>pdb|2QP3|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 26/152 (17%)
Query: 132 RDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRD 191
R P + YT S + P + ++ P F + + K+I ++R+
Sbjct: 73 RSPWVESEIGYTALSETESPRLFSSHLPIQLFPKSFFSSKA-----------KVIYLMRN 121
Query: 192 PVTRAISDYTQSSS----KKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWL 247
P +S Y + KKP+ + F ++ GT V G + ++ W+
Sbjct: 122 PRDVLVSGYFFWKNIKFIKKPKSWEEYFE--WFCQGT---------VLYGSWFDHIHGWM 170
Query: 248 KYFPLSQFIFISGETLIVDPAAEMKRLQDFLG 279
F+ +S E L D ++++ FLG
Sbjct: 171 PMREEKNFLLLSYEELKQDTGRTIEKICQFLG 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,264,968
Number of Sequences: 62578
Number of extensions: 462526
Number of successful extensions: 1006
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 45
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)