Query psy14881
Match_columns 384
No_of_seqs 264 out of 1650
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 23:12:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3704|consensus 100.0 6.1E-59 1.3E-63 410.0 19.1 259 34-384 100-359 (360)
2 KOG3703|consensus 100.0 2E-43 4.2E-48 337.6 18.8 258 40-384 594-864 (873)
3 PF00685 Sulfotransfer_1: Sulf 99.8 5.5E-22 1.2E-26 184.3 5.3 175 42-283 2-199 (267)
4 PLN02164 sulfotransferase 99.7 6.1E-18 1.3E-22 161.8 10.9 170 38-284 76-263 (346)
5 KOG1584|consensus 99.7 1E-15 2.2E-20 140.7 12.2 54 232-285 167-220 (297)
6 KOG3988|consensus 99.5 4.5E-14 9.8E-19 126.7 5.5 181 36-284 65-264 (378)
7 PF13469 Sulfotransfer_3: Sulf 99.2 5.9E-11 1.3E-15 105.3 8.1 29 42-70 1-30 (215)
8 KOG3704|consensus 99.0 1E-10 2.3E-15 104.7 3.6 186 120-354 128-317 (360)
9 PF09037 Sulphotransf: Stf0 su 98.8 5.7E-09 1.2E-13 95.9 6.0 41 244-284 177-219 (245)
10 COG4424 Uncharacterized protei 96.7 0.014 2.9E-07 51.1 9.1 46 238-284 173-218 (250)
11 KOG3703|consensus 95.9 0.0054 1.2E-07 61.0 2.7 49 158-206 663-711 (873)
12 PF03567 Sulfotransfer_2: Sulf 94.0 0.046 1E-06 49.7 3.2 25 124-148 78-102 (253)
13 PF06990 Gal-3-0_sulfotr: Gala 92.9 0.83 1.8E-05 45.3 10.1 99 39-146 62-170 (402)
14 KOG3347|consensus 91.6 0.32 7E-06 40.9 4.6 92 39-143 5-111 (176)
15 PLN02164 sulfotransferase 88.6 0.22 4.9E-06 48.2 1.5 30 172-203 157-186 (346)
16 PF00685 Sulfotransfer_1: Sulf 78.8 1.1 2.3E-05 40.9 1.5 25 179-203 101-125 (267)
17 KOG1584|consensus 78.3 1.4 3E-05 41.4 2.1 24 181-204 123-146 (297)
18 PF13173 AAA_14: AAA domain 73.5 13 0.00027 30.2 6.4 24 42-65 3-27 (128)
19 PF13469 Sulfotransfer_3: Sulf 70.4 2.5 5.3E-05 36.5 1.6 23 179-202 125-147 (215)
20 PF10662 PduV-EutP: Ethanolami 63.4 21 0.00047 29.9 5.7 21 43-63 3-23 (143)
21 KOG4651|consensus 57.5 17 0.00037 34.9 4.7 87 43-147 83-169 (324)
22 COG3551 Uncharacterized protei 57.0 6.8 0.00015 36.8 1.8 20 43-62 12-31 (402)
23 PRK14530 adenylate kinase; Pro 53.6 12 0.00025 33.5 2.8 28 40-67 2-29 (215)
24 PF13207 AAA_17: AAA domain; P 53.3 9.3 0.0002 30.3 1.9 21 44-64 2-22 (121)
25 KOG3922|consensus 51.3 8.9 0.00019 36.0 1.6 24 123-146 159-182 (361)
26 PRK08118 topology modulation p 49.3 15 0.00033 31.5 2.7 27 42-68 2-28 (167)
27 smart00614 ZnF_BED BED zinc fi 49.2 16 0.00035 24.4 2.3 19 48-66 30-49 (50)
28 COG1102 Cmk Cytidylate kinase 47.3 13 0.00029 31.9 2.0 26 44-69 3-28 (179)
29 cd01428 ADK Adenylate kinase ( 45.1 20 0.00042 31.1 2.8 26 43-68 1-26 (194)
30 PF03567 Sulfotransfer_2: Sulf 44.7 12 0.00026 33.6 1.4 22 43-64 10-31 (253)
31 TIGR02729 Obg_CgtA Obg family 44.1 28 0.00061 33.5 3.9 49 20-68 131-185 (329)
32 TIGR01351 adk adenylate kinase 41.5 25 0.00053 31.2 2.9 26 43-68 1-26 (210)
33 PF13521 AAA_28: AAA domain; P 40.7 19 0.00042 30.4 2.0 21 44-64 2-22 (163)
34 PRK12299 obgE GTPase CgtA; Rev 40.4 38 0.00082 32.7 4.2 49 20-68 132-186 (335)
35 KOG3988|consensus 39.4 26 0.00056 32.8 2.7 26 116-141 169-194 (378)
36 PLN02674 adenylate kinase 36.7 34 0.00075 31.4 3.1 29 40-68 30-58 (244)
37 PRK14528 adenylate kinase; Pro 35.4 32 0.0007 29.9 2.6 26 42-67 2-27 (186)
38 TIGR01360 aden_kin_iso1 adenyl 34.6 35 0.00077 29.2 2.8 27 40-66 2-28 (188)
39 PF08477 Miro: Miro-like prote 34.5 42 0.0009 26.2 3.0 22 44-65 2-23 (119)
40 PRK13949 shikimate kinase; Pro 32.9 34 0.00074 29.3 2.3 25 43-67 3-27 (169)
41 cd04105 SR_beta Signal recogni 32.8 43 0.00092 29.6 3.0 23 42-64 1-23 (203)
42 PRK13947 shikimate kinase; Pro 32.7 42 0.00091 28.4 2.9 23 42-64 2-24 (171)
43 TIGR01359 UMP_CMP_kin_fam UMP- 32.6 39 0.00085 28.9 2.7 25 44-68 2-26 (183)
44 COG0002 ArgC Acetylglutamate s 32.0 47 0.001 32.1 3.2 29 41-69 2-30 (349)
45 KOG3922|consensus 31.7 33 0.00072 32.4 2.1 38 185-222 163-209 (361)
46 COG0563 Adk Adenylate kinase a 30.9 42 0.0009 29.2 2.6 22 43-64 2-23 (178)
47 PF00625 Guanylate_kin: Guanyl 30.8 51 0.0011 28.4 3.1 25 44-68 5-30 (183)
48 cd01897 NOG NOG1 is a nucleola 30.3 47 0.001 27.6 2.8 22 42-63 1-22 (168)
49 PF00437 T2SE: Type II/IV secr 30.0 33 0.00073 31.6 1.9 27 41-67 127-154 (270)
50 PRK13900 type IV secretion sys 29.8 50 0.0011 31.8 3.1 26 40-65 159-185 (332)
51 PRK14532 adenylate kinase; Pro 29.6 47 0.001 28.7 2.7 26 43-68 2-27 (188)
52 PRK00625 shikimate kinase; Pro 29.5 42 0.00091 29.0 2.3 25 43-67 2-26 (173)
53 PF03266 NTPase_1: NTPase; In 29.2 45 0.00097 28.7 2.4 21 43-63 1-22 (168)
54 PLN02459 probable adenylate ki 28.8 63 0.0014 30.0 3.5 43 238-283 211-254 (261)
55 PF05621 TniB: Bacterial TniB 28.3 63 0.0014 30.7 3.4 34 36-69 56-90 (302)
56 PRK00279 adk adenylate kinase; 28.2 50 0.0011 29.4 2.7 25 44-68 3-27 (215)
57 PRK02496 adk adenylate kinase; 28.2 47 0.001 28.6 2.4 22 44-65 4-25 (184)
58 KOG3955|consensus 28.0 45 0.00098 31.0 2.3 25 125-149 159-183 (361)
59 PRK14021 bifunctional shikimat 27.9 50 0.0011 34.2 3.0 30 38-67 3-32 (542)
60 PF09439 SRPRB: Signal recogni 27.8 50 0.0011 28.9 2.5 26 40-65 2-27 (181)
61 PRK05339 PEP synthetase regula 27.4 39 0.00086 31.5 1.9 23 41-63 143-165 (269)
62 PF13238 AAA_18: AAA domain; P 27.3 43 0.00093 26.4 1.9 21 44-64 1-21 (129)
63 cd01895 EngA2 EngA2 subfamily. 26.7 64 0.0014 26.6 3.0 25 41-65 2-26 (174)
64 PRK06217 hypothetical protein; 26.0 56 0.0012 28.2 2.5 25 43-67 3-27 (183)
65 cd04138 H_N_K_Ras_like H-Ras/N 25.9 65 0.0014 26.3 2.9 20 43-62 3-22 (162)
66 PF01580 FtsK_SpoIIIE: FtsK/Sp 25.8 58 0.0013 28.6 2.6 23 39-61 36-58 (205)
67 cd00808 GluRS_core catalytic c 25.7 97 0.0021 28.4 4.1 54 231-284 11-69 (239)
68 COG1084 Predicted GTPase [Gene 25.7 96 0.0021 29.8 4.1 30 40-69 167-197 (346)
69 PF03490 Varsurf_PPLC: Variant 25.7 20 0.00044 24.0 -0.2 36 22-57 5-40 (51)
70 PF03205 MobB: Molybdopterin g 25.6 53 0.0011 27.2 2.2 20 42-61 1-20 (140)
71 PRK14531 adenylate kinase; Pro 25.6 56 0.0012 28.2 2.5 26 43-68 4-29 (183)
72 cd04101 RabL4 RabL4 (Rab-like4 25.5 74 0.0016 26.2 3.2 22 43-64 2-23 (164)
73 PRK03731 aroL shikimate kinase 25.5 57 0.0012 27.6 2.4 25 43-67 4-28 (171)
74 PRK03839 putative kinase; Prov 25.3 61 0.0013 27.8 2.6 24 44-67 3-26 (180)
75 cd02019 NK Nucleoside/nucleoti 25.2 77 0.0017 22.5 2.7 21 44-64 2-22 (69)
76 PF02892 zf-BED: BED zinc fing 25.0 35 0.00077 21.9 0.8 15 51-65 30-45 (45)
77 PF12645 HTH_16: Helix-turn-he 25.0 85 0.0018 22.4 2.9 21 356-376 11-31 (65)
78 PTZ00088 adenylate kinase 1; P 24.9 61 0.0013 29.4 2.6 26 43-68 8-33 (229)
79 PRK12296 obgE GTPase CgtA; Rev 24.7 81 0.0018 32.3 3.7 47 21-67 134-186 (500)
80 PRK00454 engB GTP-binding prot 24.6 71 0.0015 27.4 3.0 27 37-63 20-46 (196)
81 cd01868 Rab11_like Rab11-like. 23.9 70 0.0015 26.5 2.7 23 42-64 4-26 (165)
82 COG1806 Uncharacterized protei 23.8 39 0.00085 31.3 1.1 25 41-65 144-168 (273)
83 COG0703 AroK Shikimate kinase 23.7 72 0.0016 27.6 2.7 23 42-64 3-25 (172)
84 PLN02200 adenylate kinase fami 23.4 82 0.0018 28.6 3.2 25 43-67 45-69 (234)
85 cd01870 RhoA_like RhoA-like su 22.8 85 0.0018 26.2 3.0 22 42-63 2-23 (175)
86 PRK05800 cobU adenosylcobinami 22.7 77 0.0017 27.2 2.7 22 43-64 3-24 (170)
87 PF06990 Gal-3-0_sulfotr: Gala 22.7 61 0.0013 32.2 2.3 31 174-204 139-170 (402)
88 cd01866 Rab2 Rab2 subfamily. 22.4 79 0.0017 26.5 2.7 23 42-64 5-27 (168)
89 PRK12297 obgE GTPase CgtA; Rev 22.3 1.2E+02 0.0025 30.4 4.2 31 38-68 155-186 (424)
90 TIGR01851 argC_other N-acetyl- 22.1 86 0.0019 30.0 3.1 28 42-69 2-29 (310)
91 PRK08099 bifunctional DNA-bind 21.4 69 0.0015 31.8 2.4 27 40-66 218-244 (399)
92 TIGR00231 small_GTP small GTP- 21.1 87 0.0019 24.9 2.7 24 42-65 2-25 (161)
93 cd01863 Rab18 Rab18 subfamily. 21.1 93 0.002 25.5 2.9 22 43-64 2-23 (161)
94 cd00876 Ras Ras family. The R 21.0 1E+02 0.0022 25.0 3.1 22 43-64 1-22 (160)
95 cd04156 ARLTS1 ARLTS1 subfamil 20.9 96 0.0021 25.4 3.0 22 44-65 2-23 (160)
96 PRK15453 phosphoribulokinase; 20.9 91 0.002 29.5 2.9 25 39-63 3-27 (290)
97 PF01118 Semialdhyde_dh: Semia 20.5 93 0.002 24.8 2.7 25 44-69 2-27 (121)
98 PRK14527 adenylate kinase; Pro 20.4 92 0.002 27.0 2.8 39 238-279 152-191 (191)
99 cd04124 RabL2 RabL2 subfamily. 20.1 94 0.002 25.8 2.7 21 43-63 2-22 (161)
No 1
>KOG3704|consensus
Probab=100.00 E-value=6.1e-59 Score=410.01 Aligned_cols=259 Identities=65% Similarity=1.145 Sum_probs=233.5
Q ss_pred ccccccCCCCEEEeCcCcchHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHhhcCCCCCCCcEEEecCcccccCCc
Q psy14881 34 NLQASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDKNYVRGLSWYRNQMPLTLEGQMTMEKTPSYFVTKR 113 (384)
Q Consensus 34 ~~~~~~~lP~~~IiG~~KsGTT~L~~~L~~HP~v~~~~kE~~ff~~~~~~~~~~Y~~~~~~~~~~~~~~e~sp~Y~~~~~ 113 (384)
...+.+.+|.-+|||..|.||-+|..+|..||+|.....|+|||+.+|.+|++||+++||.+.++++++|+||.||...+
T Consensus 100 ~~~~~k~lPqalIigvkkggtRalle~l~lhpdVra~~~e~hffD~~y~~gl~wyr~~MP~tl~~qItmEKTPsYFvt~e 179 (360)
T KOG3704|consen 100 SSHGSKQLPQALIIGVKKGGTRALLEFLRLHPDVRAVGSEPHFFDRNYTRGLDWYRSQMPRTLDGQITMEKTPSYFVTRE 179 (360)
T ss_pred cCcccccCChheEEeecccchHHHHHHHhhChhhhhhccCCccccccccccchhHHhcCCcccCCceEEecCchhhcccc
Confidence 34667899999999999999999999999999999877899999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCCeEEEEeeCchhhhhhhhhhhhhhcCCCccccccccccCCcccccccchhhhhhcCCcceEEEEecCch
Q psy14881 114 VPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPV 193 (384)
Q Consensus 114 ~~~ri~~~~P~~KiI~ilRdPv~ra~S~y~~~~~~~~~~~~~g~~~~~ksp~~~~~~~~~~~i~~~~p~ak~I~~~RdP~ 193 (384)
+|+||+.|+|++|+|+|+||||.||+|+|.+.....-
T Consensus 180 ~P~Rv~~M~pd~KLivvvR~PvtRaiSDyTQt~sk~~------------------------------------------- 216 (360)
T KOG3704|consen 180 VPKRVYSMNPDTKLIVVVRDPVTRAISDYTQTLSKKP------------------------------------------- 216 (360)
T ss_pred cchHHHhcCCCceEEEEEcCchhhhHHHHHHHHhcCC-------------------------------------------
Confidence 9999999999999999999999999999988764221
Q ss_pred hhhhhhhhhhccCCchhhhhcHHHHHhhc-CcccccccccccccccHHHHHHHHHhhCCCCcEEEEEccccccChHHHHH
Q psy14881 194 TRAISDYTQSSSKKPEYLRKSFADLFYIN-GTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMK 272 (384)
Q Consensus 194 ~r~~S~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~l~~g~Y~~~l~~w~~~f~~eqilvl~yEdl~~dP~~~l~ 272 (384)
+. ..|+...+.+ ..+.++..|..+..|.|+.||++|+++||-.|+|+|++|.|+.||..+|.
T Consensus 217 ---------------~~--P~fe~lafkn~~~g~id~~w~ai~iglY~~Hle~WL~yFpL~q~lfVsGerli~dPa~E~~ 279 (360)
T KOG3704|consen 217 ---------------DI--PTFEVLAFKNRTAGLIDTSWKAIRIGLYAVHLENWLRYFPLRQILFVSGERLISDPAGELG 279 (360)
T ss_pred ---------------CC--CceeeeeeecCccceeecchhhhhhhHHHHHHHHHHHhCchhheEEecCceeecCcHHHHH
Confidence 00 1233333332 22456677888999999999999999999999999999999999999999
Q ss_pred HHHhhcCCceeccccceeecCCCCCCccccchhhhhhhhhhhhhhcccccccCCCCccccccCcCccCCCccCCCCCCCC
Q psy14881 273 RLQDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTKGFPCLMKSETLASPHCLGKNKGRIH 352 (384)
Q Consensus 273 ~I~~FLGl~~~~~~~~f~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~c~~~~~~~~~~~~l~~~~~r~~ 352 (384)
+|++||||+....+++|+|| .+|||+|+.+++....++||+++|||.+
T Consensus 280 rVqdFLgLkr~it~khfyFn--------------------------------ktKGFpClkK~e~ss~prCLgksKgr~h 327 (360)
T KOG3704|consen 280 RVQDFLGLKRVITDKHFYFN--------------------------------KTKGFPCLKKAEDSSRPRCLGKSKGRTH 327 (360)
T ss_pred HHHHHhcccceeccceeEEe--------------------------------cCCCceeeeccccCCCccccccccCCCC
Confidence 99999999999888888877 6789999999887777899999999999
Q ss_pred CCCCHHHHHHHHhhhhHhHHHHHHHhCCCCCC
Q psy14881 353 PKIDESILDRLTQFYRPFNLKFYQMTGIDFGW 384 (384)
Q Consensus 353 ~~~~~~~~~~L~~~y~p~~~~L~~Llg~dl~W 384 (384)
|.+||+...+|++||+|+|.++++++|+||.|
T Consensus 328 p~idp~~i~rLrefyrpfN~kFyq~tG~dF~W 359 (360)
T KOG3704|consen 328 PHIDPEVIRRLREFYRPFNLKFYQMTGQDFGW 359 (360)
T ss_pred CCCCHHHHHHHHHHhcchhhhHHHhhccccCC
Confidence 99999999999999999999999999999999
No 2
>KOG3703|consensus
Probab=100.00 E-value=2e-43 Score=337.57 Aligned_cols=258 Identities=32% Similarity=0.614 Sum_probs=208.8
Q ss_pred CCCCEEEeCcCcchHHHHHHHHHcCCCCcCC------CCCcccccc-cccchHHHHhhcCCCCC--CCcEEEecCccccc
Q psy14881 40 HLPDALIIGVKKSGTRALLEFIKLHPNVQAP------SSEMHFFDK-NYVRGLSWYRNQMPLTL--EGQMTMEKTPSYFV 110 (384)
Q Consensus 40 ~lP~~~IiG~~KsGTT~L~~~L~~HP~v~~~------~kE~~ff~~-~~~~~~~~Y~~~~~~~~--~~~~~~e~sp~Y~~ 110 (384)
++|+|+|||.+|+|||+|+.+|+.||.+... ..|+.||+. +|.+|++||++.||..+ .....+|+|.+|+.
T Consensus 594 ~lPkfLiIGPQKTGtTAly~FLsmHp~i~sn~psp~tFEEvQFFng~NY~kGidWYMdfFP~psn~~tdf~FEKSAtYFd 673 (873)
T KOG3703|consen 594 RLPKFLIIGPQKTGTTALYLFLSMHPSISSNTPSPETFEEVQFFNGNNYHKGIDWYMDFFPVPSNTTTDFLFEKSATYFD 673 (873)
T ss_pred cccceEEEcCcccchhHHHHHHhhCcchhcCCCCCCchhheeeccCCccccchhhHHhcCCCCccccchheeeccccccC
Confidence 4999999999999999999999999999862 278999997 79999999999999543 34678999999999
Q ss_pred CCchhHHHHhcCCCCeEEEEeeCchhhhhhhhhhhhhhcCCCccccccccccCCcccccccchhhhhhcCCcceEEEEec
Q psy14881 111 TKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVR 190 (384)
Q Consensus 111 ~~~~~~ri~~~~P~~KiI~ilRdPv~ra~S~y~~~~~~~~~~~~~g~~~~~ksp~~~~~~~~~~~i~~~~p~ak~I~~~R 190 (384)
+..+|+|.....|.||||.|+-||.+||||+|.|....+.|..
T Consensus 674 se~aPkraasLvP~AKIvtILinPadRAYSWyQHqraH~DpvA------------------------------------- 716 (873)
T KOG3703|consen 674 SEVAPKRAASLVPHAKIVTILINPADRAYSWYQHQRAHEDPVA------------------------------------- 716 (873)
T ss_pred CcccchhhhhhCCcceEEEEEeChHHhhhHHHHHHhhcCCcce-------------------------------------
Confidence 9999999999999999999999999999999999987654421
Q ss_pred CchhhhhhhhhhhccCCchhhhhcHHHHHhhcCcccccccccccccccHHHHHHHHHhhCCCCcEEEEEccccccChHHH
Q psy14881 191 DPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAE 270 (384)
Q Consensus 191 dP~~r~~S~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~g~Y~~~l~~w~~~f~~eqilvl~yEdl~~dP~~~ 270 (384)
-.++-|. ....+.... ....+ ....++..|.|+.||++|+.+|+..|+++|++++|..||..+
T Consensus 717 ----l~~~fye-VIsas~~ap-s~lk~-----------lq~RClvpG~Ya~HlerWL~y~~~~QlliiDg~qLr~~Pa~v 779 (873)
T KOG3703|consen 717 ----LNYSFYE-VISASSSAP-SALKA-----------LQNRCLVPGWYATHLERWLTYFPAQQLLIIDGQQLRTNPATV 779 (873)
T ss_pred ----ecceeEE-EEecCCCCc-HHHHH-----------HHHhccCcchHHHHHHHHHHhCCcccEEEEccHHhccCcHHH
Confidence 1111000 000111000 01111 123468889999999999999999999999999999999999
Q ss_pred HHHHHhhcCCceeccccceeecCCCCCCccccchhhhhhhhhhhhhhcccccccCCCCccccccCcCccCCCccCCCCCC
Q psy14881 271 MKRLQDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTKGFPCLMKSETLASPHCLGKNKGR 350 (384)
Q Consensus 271 l~~I~~FLGl~~~~~~~~f~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~c~~~~~~~~~~~~l~~~~~r 350 (384)
|..|.+||||.+.++-+. +++|+..|||+|.....++ ..|++++|||
T Consensus 780 m~~~qkfLgv~p~~~y~~-------------------------------~lrfd~~KGF~Cqlleggk--tkCLGkSKGR 826 (873)
T KOG3703|consen 780 MNELQKFLGVTPELNYSE-------------------------------TLRFDPKKGFWCQLLEGGK--TKCLGKSKGR 826 (873)
T ss_pred HHHHHHHhCCCCCCChhh-------------------------------eeeecCCCceeEeeccCCc--ccccccccCC
Confidence 999999999987654211 2344578999998765543 3799999999
Q ss_pred CCCCCCHHHHHHHHhhhhHhHHHHHHHh---CCCCC-C
Q psy14881 351 IHPKIDESILDRLTQFYRPFNLKFYQMT---GIDFG-W 384 (384)
Q Consensus 351 ~~~~~~~~~~~~L~~~y~p~~~~L~~Ll---g~dl~-W 384 (384)
++|+||++.|..|.+||+.||.+|++|| |+.++ |
T Consensus 827 kYP~Md~~sr~fL~~yyr~hN~eLsKlL~klgqpiPsW 864 (873)
T KOG3703|consen 827 KYPEMDEESRTFLSDYYRDHNVELSKLLHKLGQPIPSW 864 (873)
T ss_pred cCCCCChHHHHHHHHHHhhccHHHHHHHHHcCCCCcHH
Confidence 9999999999999999999999999987 66666 6
No 3
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=99.85 E-value=5.5e-22 Score=184.33 Aligned_cols=175 Identities=33% Similarity=0.557 Sum_probs=107.7
Q ss_pred CCEEEeCcCcchHHHHHHHHHcCCCCcCC--CCCcccccc-cccchHHHHhhcCCCCCCCcEEEecCcccccCCchhHHH
Q psy14881 42 PDALIIGVKKSGTRALLEFIKLHPNVQAP--SSEMHFFDK-NYVRGLSWYRNQMPLTLEGQMTMEKTPSYFVTKRVPSRV 118 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L~~HP~v~~~--~kE~~ff~~-~~~~~~~~Y~~~~~~~~~~~~~~e~sp~Y~~~~~~~~ri 118 (384)
|++||+|++|||||||.++|++||++... .+|+++++. .+...++++...++...... +..+.+........++
T Consensus 2 ~~i~I~g~prSGTt~l~~lL~~h~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 78 (267)
T PF00685_consen 2 PPIFIVGAPRSGTTWLRELLNSHPDIFSFSPFKEPHFFNNRDYSPFLEWYRDFFPFRIKPQ---EHIPSFSHVESKIVRL 78 (267)
T ss_dssp TSEEEEESTTSSHHHHHHHHHHHHTTTETHHHTSSHHTTTHHHSTBTTHHHHTSHEEGTTT---EEEGGCTTTETHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHhCcccccccccccccccchhhhhhhhhhhhcccccccccc---cccccccccchhHHHH
Confidence 78999999999999999999999999875 468888775 34455666655443110110 0000000000011111
Q ss_pred H--------------------hcCCCCeEEEEeeCchhhhhhhhhhhhhhcCCCccccccccccCCcccccccchhhhhh
Q psy14881 119 K--------------------KMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKK 178 (384)
Q Consensus 119 ~--------------------~~~P~~KiI~ilRdPv~ra~S~y~~~~~~~~~~~~~g~~~~~ksp~~~~~~~~~~~i~~ 178 (384)
. ...|++|+|+++|||++++.|.|.+.......
T Consensus 79 ~~~~~~~~~~~H~~~~~~~~~~~~~~~KiI~ivRdP~d~~~S~~~~~~~~~~~--------------------------- 131 (267)
T PF00685_consen 79 RDLPSPRFIKTHLPLDLLPKKLLFPNAKIIYIVRDPRDVIVSRYKHSWRSNPF--------------------------- 131 (267)
T ss_dssp HCSCSSEEEEE-S-GGGSHHHHHHTTEEEEEEE--HHHHHHHHHHHHHHBTTS---------------------------
T ss_pred hhccCchhhhhccccccccccccccccccceecccccchhHHHHHHHHhcccc---------------------------
Confidence 1 12466677777777777777766655432100
Q ss_pred cCCcceEEEEecCchhhhhhhhhhhccCCchhhhhcHHHHHhhcCcccccccccccccccHHHHHHHHHhhCCCCcEEEE
Q psy14881 179 MNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFI 258 (384)
Q Consensus 179 ~~p~ak~I~~~RdP~~r~~S~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~g~Y~~~l~~w~~~f~~eqilvl 258 (384)
..++ ..|++..... .......+.|..+++.|++.++++++++|
T Consensus 132 ---------------------------~~~~---~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 174 (267)
T PF00685_consen 132 ---------------------------SDPG---QRFEEFVDWF-------LQPRLLYGSWADHLKSWLSSFDRDNVLII 174 (267)
T ss_dssp ---------------------------TTHH---SHHHHHHHHH-------HTTHSTTSCHHHHHHHHHHHTTTSTEEEE
T ss_pred ---------------------------cccc---hhhhhhhhhh-------hccccccccccccccchhhhhccchhhhh
Confidence 0000 0122211000 00234567899999999999999999999
Q ss_pred EccccccChHHHHHHHHhhcCCcee
Q psy14881 259 SGETLIVDPAAEMKRLQDFLGLKVI 283 (384)
Q Consensus 259 ~yEdl~~dP~~~l~~I~~FLGl~~~ 283 (384)
+||||..||.+++++|++|||++..
T Consensus 175 ~YEdl~~dp~~~l~~I~~FLgl~~~ 199 (267)
T PF00685_consen 175 RYEDLVADPEKELKRICDFLGLPFS 199 (267)
T ss_dssp EHHHHHHSHHHHHHHHHHHTTSS--
T ss_pred cchhhhhhhhHHHHHHHHHHhhccc
Confidence 9999999999999999999999954
No 4
>PLN02164 sulfotransferase
Probab=99.74 E-value=6.1e-18 Score=161.82 Aligned_cols=170 Identities=23% Similarity=0.354 Sum_probs=104.2
Q ss_pred ccCCCCEEEeCcCcchHHHHHHHHHcC------CCCcCC--CCC----cccccccccchHHHHhhcCCCCCCCcEEEecC
Q psy14881 38 SRHLPDALIIGVKKSGTRALLEFIKLH------PNVQAP--SSE----MHFFDKNYVRGLSWYRNQMPLTLEGQMTMEKT 105 (384)
Q Consensus 38 ~~~lP~~~IiG~~KsGTT~L~~~L~~H------P~v~~~--~kE----~~ff~~~~~~~~~~Y~~~~~~~~~~~~~~e~s 105 (384)
..+--|+||+..||||||||.+++.+- +....+ ... +-|+.... +........-..+
T Consensus 76 ~~r~~DV~laSyPKsGTTWlq~iv~~i~~~~~~~~~~~pl~~~~p~~~vP~lE~~~-----------~~~~~~~~l~~~~ 144 (346)
T PLN02164 76 QARPNDFLVCSYPKTGTTWLKALTFAIANRSRFDDSSNPLLKRNPHEFVPYIEIDF-----------PFFPSVDVLKDKG 144 (346)
T ss_pred CCCCCCEEEEcCCCchhHHHHHHHHHHHcCCCcccccCcccccCccccCCceeccc-----------CCCCchhhhccCC
Confidence 444558999999999999999987431 211100 001 11111100 0000000011135
Q ss_pred cccccCC----chhHHHHhcCCCCeEEEEeeCchhhhhhhhhhhhhhcCCCccccccccccCCcccccccchhhhhhcCC
Q psy14881 106 PSYFVTK----RVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNP 181 (384)
Q Consensus 106 p~Y~~~~----~~~~ri~~~~P~~KiI~ilRdPv~ra~S~y~~~~~~~~~~~~~g~~~~~ksp~~~~~~~~~~~i~~~~p 181 (384)
|+.+.+. .+|..|.+ |++|+|+|+|||.|+++|.|++.......
T Consensus 145 PRlikTHlp~~~lP~~i~~--~~~KiIyv~RnPkDv~VS~yhf~~~~~~~------------------------------ 192 (346)
T PLN02164 145 NTLFSTHIPYGLLPDSVVK--SGCKMVYIWRDPKDTFISMWTFLHKERSQ------------------------------ 192 (346)
T ss_pred CCeeEecCChhhCcccccc--CCceEEEEecCchhheeeHHHHHhhcccc------------------------------
Confidence 5544432 24555543 89999999999999999999875421100
Q ss_pred cceEEEEecCchhhhhhhhhhhccCCchhhhhcHHHHHhhcCcccccccccccccccHHHHHHHHHhhC--CCCcEEEEE
Q psy14881 182 YVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYF--PLSQFIFIS 259 (384)
Q Consensus 182 ~ak~I~~~RdP~~r~~S~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~g~Y~~~l~~w~~~f--~~eqilvl~ 259 (384)
..+ ...+.+.|+..+. +....|.|.+|+..|++.+ .+++||+|.
T Consensus 193 --------~~~---------------~~s~ee~~e~f~~-----------g~~~~G~y~dHv~~yw~~~~~~p~~VLfl~ 238 (346)
T PLN02164 193 --------QGP---------------LNSLEESFDMFCR-----------GLSVYGPYLDHVLGYWKAYQENPDRILFLK 238 (346)
T ss_pred --------CCC---------------CCCHHHHHHHHHc-----------CCCCCCcHHHHHHHHHHHhhcCCccEEEEE
Confidence 000 0000022332221 1234789999999999987 578999999
Q ss_pred ccccccChHHHHHHHHhhcCCceec
Q psy14881 260 GETLIVDPAAEMKRLQDFLGLKVII 284 (384)
Q Consensus 260 yEdl~~dP~~~l~~I~~FLGl~~~~ 284 (384)
||||++||.+++++|++|||++...
T Consensus 239 YEDmk~D~~~~v~ria~FLG~~~s~ 263 (346)
T PLN02164 239 YETMRADPLPYVKRLAEFMGYGFTA 263 (346)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCCch
Confidence 9999999999999999999998654
No 5
>KOG1584|consensus
Probab=99.65 E-value=1e-15 Score=140.66 Aligned_cols=54 Identities=24% Similarity=0.408 Sum_probs=49.7
Q ss_pred cccccccHHHHHHHHHhhCCCCcEEEEEccccccChHHHHHHHHhhcCCceecc
Q psy14881 232 GIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKVIIT 285 (384)
Q Consensus 232 ~~l~~g~Y~~~l~~w~~~f~~eqilvl~yEdl~~dP~~~l~~I~~FLGl~~~~~ 285 (384)
+.+..|-|.+|+..|++.-.+++||++.||||++||..++++|++|||.+..-.
T Consensus 167 G~~~~Gp~~dHVl~~W~~~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~E 220 (297)
T KOG1584|consen 167 GVVPYGPWWDHVLGYWELEDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKE 220 (297)
T ss_pred CcCCcCChHHHHHHHHHhcCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHH
Confidence 356789999999999999899999999999999999999999999999998753
No 6
>KOG3988|consensus
Probab=99.47 E-value=4.5e-14 Score=126.73 Aligned_cols=181 Identities=22% Similarity=0.328 Sum_probs=111.3
Q ss_pred ccccCCCCEEEeCcCcchHHHHHHHHHcCCCCcCCCCCccccccc------ccc-hHHHHhhcCCCCCCCcEEEecCccc
Q psy14881 36 QASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDKN------YVR-GLSWYRNQMPLTLEGQMTMEKTPSY 108 (384)
Q Consensus 36 ~~~~~lP~~~IiG~~KsGTT~L~~~L~~HP~v~~~~kE~~ff~~~------~~~-~~~~Y~~~~~~~~~~~~~~e~sp~Y 108 (384)
...+..|-+||-|.||||||.+..+|.+||+|.. +.|+....+. |.+ +-+|.+-.-.. ++.|
T Consensus 65 ~y~~~mplIFiGGVPRSGTTLMRAmLDAHPdVRC-GeETrviPriL~lr~~W~ks~ke~~rl~eaG-----vT~E----- 133 (378)
T KOG3988|consen 65 GYNRTMPLIFIGGVPRSGTTLMRAMLDAHPDVRC-GEETRVIPRILALRSGWSKSEKEWLRLQEAG-----VTDE----- 133 (378)
T ss_pred hhcccCceEEEcCCCCCchHHHHHHHhcCCCccc-CccceehHHHHHHHHHhhhhhHhHhhhhhcc-----chHH-----
Confidence 4577899999999999999999999999999987 4577665542 211 12332110000 1111
Q ss_pred ccCCchhHHHHhcCCCCeEEEEeeCchhhhhhhhhhhhh--hcCCCccccccccccCCcccccccchhhhhhcCCcceEE
Q psy14881 109 FVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSR--NQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLI 186 (384)
Q Consensus 109 ~~~~~~~~ri~~~~P~~KiI~ilRdPv~ra~S~y~~~~~--~~~~~~~~g~~~~~ksp~~~~~~~~~~~i~~~~p~ak~I 186 (384)
+ .+-|+|.|....- .+.| ..+-+.|.|-.+. ....+..+||+|||+
T Consensus 134 ---------V----------------~d~AisaFilEIiakHge~----AprLCNKDPftlk---~~~yl~rLfPNAKfl 181 (378)
T KOG3988|consen 134 ---------V----------------LDSAISAFILEIIAKHGEP----APRLCNKDPFTLK---SLVYLSRLFPNAKFL 181 (378)
T ss_pred ---------H----------------HHHHHHHHHHHHHHhcCCc----ccccccCCchHHH---HHHHHHHHCCCceEE
Confidence 0 1233444433221 1111 0112333332221 256788899999999
Q ss_pred EEecCchhhhhhhhhhhccCCchhhhhcHHHHHhhcCcccccccccccccccHHHHHHHHHh----------hCCCCcEE
Q psy14881 187 VVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWLK----------YFPLSQFI 256 (384)
Q Consensus 187 ~~~RdP~~r~~S~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~g~Y~~~l~~w~~----------~f~~eqil 256 (384)
.|.||......|....-+.. .. ...+.|.+.+..|-+ -.|.++++
T Consensus 182 lMvRDgRAtVhSmIsRKVtI------aG-------------------fdlssyr~c~tkWN~aie~M~~QC~~vg~~~Cl 236 (378)
T KOG3988|consen 182 LMVRDGRATVHSMISRKVTI------AG-------------------FDLSSYRQCMTKWNQAIEVMYFQCMEVGKKKCL 236 (378)
T ss_pred EEEecchHHHHHHHhcccee------cc-------------------ccchHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 99999887766543211100 01 112334444444422 25889999
Q ss_pred EEEccccccChHHHHHHHHhhcCCceec
Q psy14881 257 FISGETLIVDPAAEMKRLQDFLGLKVII 284 (384)
Q Consensus 257 vl~yEdl~~dP~~~l~~I~~FLGl~~~~ 284 (384)
-|.||+|+..|.+.|++|.+||++++..
T Consensus 237 ~VyYEqLVlhPe~~mr~Il~FLdipw~d 264 (378)
T KOG3988|consen 237 KVYYEQLVLHPEEWMRRILKFLDIPWSD 264 (378)
T ss_pred HHHHHHHHhCHHHHHHHHHHHhCCCcHH
Confidence 9999999999999999999999999974
No 7
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=99.18 E-value=5.9e-11 Score=105.33 Aligned_cols=29 Identities=28% Similarity=0.539 Sum_probs=25.9
Q ss_pred CCEEEeCcCcchHHHHH-HHHHcCCCCcCC
Q psy14881 42 PDALIIGVKKSGTRALL-EFIKLHPNVQAP 70 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~-~~L~~HP~v~~~ 70 (384)
+.+||+|++|||||+|. .+|++||++...
T Consensus 1 ~pvfI~G~~RSGTTlL~~~Ll~~~~~~~~~ 30 (215)
T PF13469_consen 1 RPVFIVGMPRSGTTLLSRRLLSQHPQIWGV 30 (215)
T ss_dssp SCEEEECSTTSSHHHHH-HHHCTSTTEECG
T ss_pred CeEEEECCCCCcHHHHHHHHHccCCCeeec
Confidence 35899999999999999 888999997764
No 8
>KOG3704|consensus
Probab=99.05 E-value=1e-10 Score=104.71 Aligned_cols=186 Identities=37% Similarity=0.507 Sum_probs=117.3
Q ss_pred hcCCCCeEEEEeeCchhhhhhhhhhhhhhcCCCccccccccccCCcccccccchhhhhhcCCcceEEEEecCchhhhhhh
Q psy14881 120 KMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISD 199 (384)
Q Consensus 120 ~~~P~~KiI~ilRdPv~ra~S~y~~~~~~~~~~~~~g~~~~~ksp~~~~~~~~~~~i~~~~p~ak~I~~~RdP~~r~~S~ 199 (384)
...|+++.+----+--||.|+.=..|++..+|.++.|++++||||+||....+|.+|.++.|+.|+|+++|||+.|++|+
T Consensus 128 ~lhpdVra~~~e~hffD~~y~~gl~wyr~~MP~tl~~qItmEKTPsYFvt~e~P~Rv~~M~pd~KLivvvR~PvtRaiSD 207 (360)
T KOG3704|consen 128 RLHPDVRAVGSEPHFFDRNYTRGLDWYRSQMPRTLDGQITMEKTPSYFVTREVPKRVYSMNPDTKLIVVVRDPVTRAISD 207 (360)
T ss_pred hhChhhhhhccCCccccccccccchhHHhcCCcccCCceEEecCchhhcccccchHHHhcCCCceEEEEEcCchhhhHHH
Confidence 34566665332222336777777778888899999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCchhhhhcHHHHHhhcCcccccccccc-cccccHHHHHHHHHhhCCCCcEEEEEccccccCh-HHHHHHHHhh
Q psy14881 200 YTQSSSKKPEYLRKSFADLFYINGTNVVNTRWGI-VRIGLYARYLDTWLKYFPLSQFIFISGETLIVDP-AAEMKRLQDF 277 (384)
Q Consensus 200 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-l~~g~Y~~~l~~w~~~f~~eqilvl~yEdl~~dP-~~~l~~I~~F 277 (384)
|.+.. .+.+. +...... ...+.+. .+.+.+..+..-- ...|+..+.+
T Consensus 208 yTQt~---------------sk~~~--~P~fe~lafkn~~~g--------------~id~~w~ai~iglY~~Hle~WL~y 256 (360)
T KOG3704|consen 208 YTQTL---------------SKKPD--IPTFEVLAFKNRTAG--------------LIDTSWKAIRIGLYAVHLENWLRY 256 (360)
T ss_pred HHHHH---------------hcCCC--CCceeeeeeecCccc--------------eeecchhhhhhhHHHHHHHHHHHh
Confidence 87531 12110 0000000 0000000 2222222221111 2468888888
Q ss_pred cCCceec--cccceeecCCCCCCccccchhhhhhhhhhhhhhcccccccCCCCccccccCcCccCCCccCCCCCCCCCC
Q psy14881 278 LGLKVII--TEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTKGFPCLMKSETLASPHCLGKNKGRIHPK 354 (384)
Q Consensus 278 LGl~~~~--~~~~f~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~c~~~~~~~~~~~~l~~~~~r~~~~ 354 (384)
+.|.... ..+.+..|. ...-.++.+|+|++..|+.+| ||. ++.++..|+.|..+...|.
T Consensus 257 FpL~q~lfVsGerli~dP------a~E~~rVqdFLgLkr~it~kh--------fyF----nktKGFpClkK~e~ss~pr 317 (360)
T KOG3704|consen 257 FPLRQILFVSGERLISDP------AGELGRVQDFLGLKRVITDKH--------FYF----NKTKGFPCLKKAEDSSRPR 317 (360)
T ss_pred CchhheEEecCceeecCc------HHHHHHHHHHhcccceeccce--------eEE----ecCCCceeeeccccCCCcc
Confidence 8888753 233333331 123457899999999997665 442 3445678998755544443
No 9
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=98.81 E-value=5.7e-09 Score=95.93 Aligned_cols=41 Identities=29% Similarity=0.577 Sum_probs=31.6
Q ss_pred HHHHhhCCCCcE--EEEEccccccChHHHHHHHHhhcCCceec
Q psy14881 244 DTWLKYFPLSQF--IFISGETLIVDPAAEMKRLQDFLGLKVII 284 (384)
Q Consensus 244 ~~w~~~f~~eqi--lvl~yEdl~~dP~~~l~~I~~FLGl~~~~ 284 (384)
..|.++|....+ +.|.||||.+||.+++.+|++|||+++..
T Consensus 177 ~~w~~~f~~~~i~pl~i~YEdL~~dp~~~~~~Vl~fLgv~~~~ 219 (245)
T PF09037_consen 177 AFWRNWFARHGIEPLEITYEDLLADPQKTVARVLDFLGVDPPL 219 (245)
T ss_dssp HHHHHHHHHTT---EEEEHHHHHHHHHHHHHHHHHHTTS-GGG
T ss_pred HHHHHHHHHcCCCeeEEEHHHHHhCHHHHHHHHHHHhCCCCcc
Confidence 445555544444 88999999999999999999999998753
No 10
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.67 E-value=0.014 Score=51.11 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=35.9
Q ss_pred cHHHHHHHHHhhCCCCcEEEEEccccccChHHHHHHHHhhcCCceec
Q psy14881 238 LYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKVII 284 (384)
Q Consensus 238 ~Y~~~l~~w~~~f~~eqilvl~yEdl~~dP~~~l~~I~~FLGl~~~~ 284 (384)
.|...-+.|++.-+-+ .+-+-||.|..||...+..|++.||+++-.
T Consensus 173 dydaaWn~wfa~qGie-p~riaYe~Lsadp~aava~~~ealgv~~p~ 218 (250)
T COG4424 173 DYDAAWNAWFAEQGIE-PIRIAYEVLSADPTAAVASVLEALGVDPPL 218 (250)
T ss_pred HHHHHHHHHHHHcCCc-HHHHhHHHHccCcHHHHHHHHHHhCCCCCC
Confidence 4555556677665543 345789999999999999999999999854
No 11
>KOG3703|consensus
Probab=95.88 E-value=0.0054 Score=61.03 Aligned_cols=49 Identities=24% Similarity=0.519 Sum_probs=44.5
Q ss_pred cccccCCcccccccchhhhhhcCCcceEEEEecCchhhhhhhhhhhccC
Q psy14881 158 MTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSK 206 (384)
Q Consensus 158 ~~~~ksp~~~~~~~~~~~i~~~~p~ak~I~~~RdP~~r~~S~~~~~~~~ 206 (384)
.-.|||..||.++.+|.+-.++.|.||+|.|+-||.+|++|+|.|..+.
T Consensus 663 f~FEKSAtYFdse~aPkraasLvP~AKIvtILinPadRAYSWyQHqraH 711 (873)
T KOG3703|consen 663 FLFEKSATYFDSEVAPKRAASLVPHAKIVTILINPADRAYSWYQHQRAH 711 (873)
T ss_pred heeeccccccCCcccchhhhhhCCcceEEEEEeChHHhhhHHHHHHhhc
Confidence 3478999999999999999999999999999999999999999987543
No 12
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=93.99 E-value=0.046 Score=49.69 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=18.3
Q ss_pred CCeEEEEeeCchhhhhhhhhhhhhh
Q psy14881 124 YVKLIVVVRDPVTRAISDYTQSSRN 148 (384)
Q Consensus 124 ~~KiI~ilRdPv~ra~S~y~~~~~~ 148 (384)
+...|.++|||++|++|.|.+....
T Consensus 78 ~~~~~t~vRdP~~R~vS~y~~~~~~ 102 (253)
T PF03567_consen 78 SYFKFTFVRDPVDRLVSAYYDKIRR 102 (253)
T ss_dssp --EEEEEE--HHHHHHHHHHHHHH-
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHhc
Confidence 4678999999999999999987753
No 13
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=92.86 E-value=0.83 Score=45.26 Aligned_cols=99 Identities=17% Similarity=0.298 Sum_probs=53.3
Q ss_pred cCCC--CEEEeCcCcchHHHHHHHHHc----CC-CCcCCCCCcccccc--cccchHHHHhhcCCCCCCCcEEEecCcccc
Q psy14881 39 RHLP--DALIIGVKKSGTRALLEFIKL----HP-NVQAPSSEMHFFDK--NYVRGLSWYRNQMPLTLEGQMTMEKTPSYF 109 (384)
Q Consensus 39 ~~lP--~~~IiG~~KsGTT~L~~~L~~----HP-~v~~~~kE~~ff~~--~~~~~~~~Y~~~~~~~~~~~~~~e~sp~Y~ 109 (384)
.|.| +|+-+=..|||+|++..+|.. |- .+..|....+.|.. .+... +....+....-.+..... .|
T Consensus 62 ~C~P~~nIvFlKTHKTgSSTv~nIL~Rfg~~~nL~~alP~~~~~~~~~P~~f~~~---~v~~~~~~~~~nIl~~H~-rf- 136 (402)
T PF06990_consen 62 SCQPKTNIVFLKTHKTGSSTVQNILFRFGEKHNLTFALPRGGRNQFGYPAPFNAR---FVEGYPPGGRFNILCHHM-RF- 136 (402)
T ss_pred cccccceEEEEecCCcccHHHHHHHHHHHHHcCCEEecCCCCCCCCCCCCcCCcc---ccccCCCCCCceEEeehh-cc-
Confidence 3444 688889999999999998863 32 22233211222211 01000 000011111111222111 11
Q ss_pred cCCchhHHHHhcCC-CCeEEEEeeCchhhhhhhhhhhh
Q psy14881 110 VTKRVPSRVKKMNP-YVKLIVVVRDPVTRAISDYTQSS 146 (384)
Q Consensus 110 ~~~~~~~ri~~~~P-~~KiI~ilRdPv~ra~S~y~~~~ 146 (384)
....+.+..| ++++|-|+|||+++..|.|.+..
T Consensus 137 ----n~~~~~~lmP~dt~yiTILRdP~~~feS~f~Yy~ 170 (402)
T PF06990_consen 137 ----NRPEVRKLMPPDTKYITILRDPVSHFESSFNYYK 170 (402)
T ss_pred ----CHHHHHHhCCCCCeEEEEEcCHHHHHHhHHHHhh
Confidence 1234667666 79999999999999999988764
No 14
>KOG3347|consensus
Probab=91.58 E-value=0.32 Score=40.93 Aligned_cols=92 Identities=23% Similarity=0.358 Sum_probs=55.0
Q ss_pred cCCCCEEEeCcCcchHHHHHHHHHcCCCC---cCC--CCCcccccc---ccc-------chHHHHhhcCCCCCCCcEEEe
Q psy14881 39 RHLPDALIIGVKKSGTRALLEFIKLHPNV---QAP--SSEMHFFDK---NYV-------RGLSWYRNQMPLTLEGQMTME 103 (384)
Q Consensus 39 ~~lP~~~IiG~~KsGTT~L~~~L~~HP~v---~~~--~kE~~ff~~---~~~-------~~~~~Y~~~~~~~~~~~~~~e 103 (384)
+.+|+++|.|.|=||-|.|.+.|+.--++ ..+ .||-+++.. .|. +-++....++. .+-.++|
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~---~Gg~IVD 81 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMI---EGGNIVD 81 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHh---cCCcEEe
Confidence 78999999999999999999999854333 333 477777653 121 11111111111 1222332
Q ss_pred cCcccccCCchhHHHHhcCCCCeEEEEeeCchhhhhhhhh
Q psy14881 104 KTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYT 143 (384)
Q Consensus 104 ~sp~Y~~~~~~~~ri~~~~P~~KiI~ilRdPv~ra~S~y~ 143 (384)
|=.+.-.|+|..+ +|++||-|.+..|+.-.
T Consensus 82 ----yHgCd~Fperwfd------lVvVLr~~~s~LY~RL~ 111 (176)
T KOG3347|consen 82 ----YHGCDFFPERWFD------LVVVLRTPNSVLYDRLK 111 (176)
T ss_pred ----ecccCccchhhee------EEEEEecCchHHHHHHH
Confidence 2223334555443 79999999988876543
No 15
>PLN02164 sulfotransferase
Probab=88.57 E-value=0.22 Score=48.19 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=23.9
Q ss_pred chhhhhhcCCcceEEEEecCchhhhhhhhhhh
Q psy14881 172 VPSRVKKMNPYVKLIVVVRDPVTRAISDYTQS 203 (384)
Q Consensus 172 ~~~~i~~~~p~ak~I~~~RdP~~r~~S~~~~~ 203 (384)
+|..|. .|++|+|+++|||.|+++|.|++.
T Consensus 157 lP~~i~--~~~~KiIyv~RnPkDv~VS~yhf~ 186 (346)
T PLN02164 157 LPDSVV--KSGCKMVYIWRDPKDTFISMWTFL 186 (346)
T ss_pred Cccccc--cCCceEEEEecCchhheeeHHHHH
Confidence 344443 379999999999999999998654
No 16
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=78.83 E-value=1.1 Score=40.94 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=19.9
Q ss_pred cCCcceEEEEecCchhhhhhhhhhh
Q psy14881 179 MNPYVKLIVVVRDPVTRAISDYTQS 203 (384)
Q Consensus 179 ~~p~ak~I~~~RdP~~r~~S~~~~~ 203 (384)
.+|++|+|+++|||.++++|.+.+.
T Consensus 101 ~~~~~KiI~ivRdP~d~~~S~~~~~ 125 (267)
T PF00685_consen 101 LFPNAKIIYIVRDPRDVIVSRYKHS 125 (267)
T ss_dssp HHTTEEEEEEE--HHHHHHHHHHHH
T ss_pred cccccccceecccccchhHHHHHHH
Confidence 3799999999999999999987643
No 17
>KOG1584|consensus
Probab=78.32 E-value=1.4 Score=41.42 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred CcceEEEEecCchhhhhhhhhhhc
Q psy14881 181 PYVKLIVVVRDPVTRAISDYTQSS 204 (384)
Q Consensus 181 p~ak~I~~~RdP~~r~~S~~~~~~ 204 (384)
..+|+|++.|||.|.++|.|++..
T Consensus 123 ~~cKvVYv~RNpKD~~VSy~hf~~ 146 (297)
T KOG1584|consen 123 SKCKVVYVCRNPKDVLVSYYHFNR 146 (297)
T ss_pred CCCcEEEEecCccceeeeHHHHHh
Confidence 567999999999999999887654
No 18
>PF13173 AAA_14: AAA domain
Probab=73.49 E-value=13 Score=30.21 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=17.3
Q ss_pred CCEEEeCcCcch-HHHHHHHHHcCC
Q psy14881 42 PDALIIGVKKSG-TRALLEFIKLHP 65 (384)
Q Consensus 42 P~~~IiG~~KsG-TT~L~~~L~~HP 65 (384)
+-++|.|+.+|| ||.+.+++....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999 666656665433
No 19
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=70.39 E-value=2.5 Score=36.55 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=18.3
Q ss_pred cCCcceEEEEecCchhhhhhhhhh
Q psy14881 179 MNPYVKLIVVVRDPVTRAISDYTQ 202 (384)
Q Consensus 179 ~~p~ak~I~~~RdP~~r~~S~~~~ 202 (384)
.+|+ |+|+++|||.+.+.|...+
T Consensus 125 ~~p~-~~V~i~RdP~~~~~S~~~~ 147 (215)
T PF13469_consen 125 LFPD-RFVHIVRDPRDVAASWLRM 147 (215)
T ss_dssp HSTT-EEEEEE--HHHHHHHHHHH
T ss_pred hCCC-eEEEEEeChHHHHhhHHHH
Confidence 7899 9999999999999996543
No 20
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=63.40 E-value=21 Score=29.88 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.0
Q ss_pred CEEEeCcCcchHHHHHHHHHc
Q psy14881 43 DALIIGVKKSGTRALLEFIKL 63 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~ 63 (384)
.+++||...||=|+|.+.|..
T Consensus 3 rimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999986
No 21
>KOG4651|consensus
Probab=57.52 E-value=17 Score=34.93 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=49.5
Q ss_pred CEEEeCcCcchHHHHHHHHHcCCCCcCCCCCcccccccccchHHHHhhcCCCCCCCcEEEecCcccccCCchhHHHHhcC
Q psy14881 43 DALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDKNYVRGLSWYRNQMPLTLEGQMTMEKTPSYFVTKRVPSRVKKMN 122 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~HP~v~~~~kE~~ff~~~~~~~~~~Y~~~~~~~~~~~~~~e~sp~Y~~~~~~~~ri~~~~ 122 (384)
+++..|.+|+++|....++-- . ..|..|++.+-.-...|... ....-+.+ .+. .+..-....
T Consensus 83 kl~~C~I~Ksms~l~~nimc~-----L-~n~~~y~~~~~~~~~~w~~~-------~~c~~~~~-~f~----~~~~~~~~~ 144 (324)
T KOG4651|consen 83 KLIYCEIPKSMSTLWTNIMCL-----L-YNETQYTADNRSLSDTWHTS-------RSCEKEDK-SFM----NPSILLKNL 144 (324)
T ss_pred ceEEEeecccHhhhhhhhhee-----E-eChhhhccccccchHHHhhc-------cccccchh-hcc----CHHHHhhcc
Confidence 578999999999987665531 1 24666665533333444322 00011110 111 111112344
Q ss_pred CCCeEEEEeeCchhhhhhhhhhhhh
Q psy14881 123 PYVKLIVVVRDPVTRAISDYTQSSR 147 (384)
Q Consensus 123 P~~KiI~ilRdPv~ra~S~y~~~~~ 147 (384)
++.--++++|||.+|.+|.|...+-
T Consensus 145 ~~~~kfaFIRDP~eRFVS~y~dKcv 169 (324)
T KOG4651|consen 145 KDTVKFAFIRDPFERFVSAYLDKCV 169 (324)
T ss_pred cCeEEEEEecCcHHHHHHHHHHHHh
Confidence 5655678899999999999998653
No 22
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.01 E-value=6.8 Score=36.77 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=17.2
Q ss_pred CEEEeCcCcchHHHHHHHHH
Q psy14881 43 DALIIGVKKSGTRALLEFIK 62 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~ 62 (384)
-|+|.|+.||||+.|...|.
T Consensus 12 ~~lILgMHRSGTSal~gvl~ 31 (402)
T COG3551 12 LFLILGMHRSGTSALAGVLY 31 (402)
T ss_pred eeEEEeeccCcchHHHHHHH
Confidence 48899999999999987654
No 23
>PRK14530 adenylate kinase; Provisional
Probab=53.57 E-value=12 Score=33.50 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=24.4
Q ss_pred CCCCEEEeCcCcchHHHHHHHHHcCCCC
Q psy14881 40 HLPDALIIGVKKSGTRALLEFIKLHPNV 67 (384)
Q Consensus 40 ~lP~~~IiG~~KsGTT~L~~~L~~HP~v 67 (384)
.-|.++|+|.+-||-|++.+.|+.+-++
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999999999999987665
No 24
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=53.32 E-value=9.3 Score=30.27 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=19.5
Q ss_pred EEEeCcCcchHHHHHHHHHcC
Q psy14881 44 ALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 44 ~~IiG~~KsGTT~L~~~L~~H 64 (384)
++|+|.+-||-|++.+.|+.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999975
No 25
>KOG3922|consensus
Probab=51.31 E-value=8.9 Score=36.04 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=19.4
Q ss_pred CCCeEEEEeeCchhhhhhhhhhhh
Q psy14881 123 PYVKLIVVVRDPVTRAISDYTQSS 146 (384)
Q Consensus 123 P~~KiI~ilRdPv~ra~S~y~~~~ 146 (384)
+.--.|-|+|||++|.+|.|-+..
T Consensus 159 ~~PIYINvIRdPveRllS~yyflR 182 (361)
T KOG3922|consen 159 ARPIYINVIRDPVERLLSYYYFLR 182 (361)
T ss_pred CCceEEeeeccHHHHHHhHhhhhc
Confidence 334468889999999999998764
No 26
>PRK08118 topology modulation protein; Reviewed
Probab=49.33 E-value=15 Score=31.46 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.3
Q ss_pred CCEEEeCcCcchHHHHHHHHHcCCCCc
Q psy14881 42 PDALIIGVKKSGTRALLEFIKLHPNVQ 68 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L~~HP~v~ 68 (384)
+.++|+|.+=||-|+|...|+.+-++-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~ 28 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIP 28 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999876554
No 27
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=49.18 E-value=16 Score=24.40 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=15.5
Q ss_pred CcCcchHHHHHHHHH-cCCC
Q psy14881 48 GVKKSGTRALLEFIK-LHPN 66 (384)
Q Consensus 48 G~~KsGTT~L~~~L~-~HP~ 66 (384)
+..++|||.|.+-|. .||+
T Consensus 30 ~~~~~gTs~L~rHl~~~h~~ 49 (50)
T smart00614 30 RSSKGGTSNLRRHLRRKHPA 49 (50)
T ss_pred eCCCCCcHHHHHHHHhHCcC
Confidence 444599999999999 7886
No 28
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=47.32 E-value=13 Score=31.87 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.5
Q ss_pred EEEeCcCcchHHHHHHHHHcCCCCcC
Q psy14881 44 ALIIGVKKSGTRALLEFIKLHPNVQA 69 (384)
Q Consensus 44 ~~IiG~~KsGTT~L~~~L~~HP~v~~ 69 (384)
+-|-|.+=||||++...|+.|-.+-.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~ 28 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKL 28 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCce
Confidence 56889999999999999999876643
No 29
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=45.10 E-value=20 Score=31.06 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.3
Q ss_pred CEEEeCcCcchHHHHHHHHHcCCCCc
Q psy14881 43 DALIIGVKKSGTRALLEFIKLHPNVQ 68 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~HP~v~ 68 (384)
.++|+|.+-||-|.+...|+.+..+.
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~ 26 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLP 26 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 47999999999999999999875543
No 30
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=44.71 E-value=12 Score=33.62 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=16.4
Q ss_pred CEEEeCcCcchHHHHHHHHHcC
Q psy14881 43 DALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~H 64 (384)
.++.+=.+|||.|++..+|..+
T Consensus 10 ~i~f~~ipK~g~Ts~~~~l~~~ 31 (253)
T PF03567_consen 10 KIIFCHIPKTGGTSLKSILRRL 31 (253)
T ss_dssp EEEE---SSSSHHHHHHHHHHH
T ss_pred cEEEEecCCHHHHHHHHHHHHH
Confidence 5788889999999999999864
No 31
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=44.12 E-value=28 Score=33.53 Aligned_cols=49 Identities=16% Similarity=0.387 Sum_probs=32.9
Q ss_pred cccCCccccccccccc-----ccccCCCCEEEeCcCcchHHHHHHHHH-cCCCCc
Q psy14881 20 QRNASPKYKFLRDENL-----QASRHLPDALIIGVKKSGTRALLEFIK-LHPNVQ 68 (384)
Q Consensus 20 ~~~~~~~~~~~~~~~~-----~~~~~lP~~~IiG~~KsGTT~L~~~L~-~HP~v~ 68 (384)
.+|..|+++..-.++- -..+.++++.|||.+-+|=|+|...|. ..|.|.
T Consensus 131 ~~~~~p~~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va 185 (329)
T TIGR02729 131 STNRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIA 185 (329)
T ss_pred ccCCCCcccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCcccc
Confidence 4566777654443333 235778999999999999666666665 445543
No 32
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=41.50 E-value=25 Score=31.23 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=22.2
Q ss_pred CEEEeCcCcchHHHHHHHHHcCCCCc
Q psy14881 43 DALIIGVKKSGTRALLEFIKLHPNVQ 68 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~HP~v~ 68 (384)
.++|+|.|-||-|.+...|+.+-.+.
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~ 26 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLP 26 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 37999999999999999999765543
No 33
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=40.65 E-value=19 Score=30.36 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.0
Q ss_pred EEEeCcCcchHHHHHHHHHcC
Q psy14881 44 ALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 44 ~~IiG~~KsGTT~L~~~L~~H 64 (384)
+.|+|.+-||-|+|...|+.|
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999988
No 34
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=40.39 E-value=38 Score=32.72 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=33.1
Q ss_pred cccCCccccccccccc-----ccccCCCCEEEeCcCcchHHHHHHHHH-cCCCCc
Q psy14881 20 QRNASPKYKFLRDENL-----QASRHLPDALIIGVKKSGTRALLEFIK-LHPNVQ 68 (384)
Q Consensus 20 ~~~~~~~~~~~~~~~~-----~~~~~lP~~~IiG~~KsGTT~L~~~L~-~HP~v~ 68 (384)
.+|..|+++..=.++- -..+.++++-|||.|-+|=|+|...|+ +.|.|.
T Consensus 132 ~~~~~p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va 186 (335)
T PRK12299 132 STNRAPRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIA 186 (335)
T ss_pred ccCCCCccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccC
Confidence 3566777644433333 236789999999999999666666655 566654
No 35
>KOG3988|consensus
Probab=39.40 E-value=26 Score=32.81 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=21.6
Q ss_pred HHHHhcCCCCeEEEEeeCchhhhhhh
Q psy14881 116 SRVKKMNPYVKLIVVVRDPVTRAISD 141 (384)
Q Consensus 116 ~ri~~~~P~~KiI~ilRdPv~ra~S~ 141 (384)
.-+.+.+|++|++.++||......|.
T Consensus 169 ~yl~rLfPNAKfllMvRDgRAtVhSm 194 (378)
T KOG3988|consen 169 VYLSRLFPNAKFLLMVRDGRATVHSM 194 (378)
T ss_pred HHHHHHCCCceEEEEEecchHHHHHH
Confidence 35778999999999999998776555
No 36
>PLN02674 adenylate kinase
Probab=36.66 E-value=34 Score=31.42 Aligned_cols=29 Identities=21% Similarity=0.104 Sum_probs=25.3
Q ss_pred CCCCEEEeCcCcchHHHHHHHHHcCCCCc
Q psy14881 40 HLPDALIIGVKKSGTRALLEFIKLHPNVQ 68 (384)
Q Consensus 40 ~lP~~~IiG~~KsGTT~L~~~L~~HP~v~ 68 (384)
.-+.++|+|+|-||-|.+...|+.+-++.
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~ 58 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLC 58 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 34789999999999999999999887664
No 37
>PRK14528 adenylate kinase; Provisional
Probab=35.40 E-value=32 Score=29.94 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCEEEeCcCcchHHHHHHHHHcCCCC
Q psy14881 42 PDALIIGVKKSGTRALLEFIKLHPNV 67 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L~~HP~v 67 (384)
..++|+|.|-||-|++...|+.+-++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~ 27 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSI 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56899999999999999999877544
No 38
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=34.60 E-value=35 Score=29.18 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=22.8
Q ss_pred CCCCEEEeCcCcchHHHHHHHHHcCCC
Q psy14881 40 HLPDALIIGVKKSGTRALLEFIKLHPN 66 (384)
Q Consensus 40 ~lP~~~IiG~~KsGTT~L~~~L~~HP~ 66 (384)
..|-++|+|.+-||-|++...|+.+-+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999986543
No 39
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=34.51 E-value=42 Score=26.16 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=15.9
Q ss_pred EEEeCcCcchHHHHHHHHHcCC
Q psy14881 44 ALIIGVKKSGTRALLEFIKLHP 65 (384)
Q Consensus 44 ~~IiG~~KsGTT~L~~~L~~HP 65 (384)
++|+|...||=|+|-+.|...+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999666555555433
No 40
>PRK13949 shikimate kinase; Provisional
Probab=32.93 E-value=34 Score=29.33 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=22.0
Q ss_pred CEEEeCcCcchHHHHHHHHHcCCCC
Q psy14881 43 DALIIGVKKSGTRALLEFIKLHPNV 67 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~HP~v 67 (384)
.++|||.+=||-|+|...|+.+-++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4899999999999999999986554
No 41
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=32.75 E-value=43 Score=29.58 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.5
Q ss_pred CCEEEeCcCcchHHHHHHHHHcC
Q psy14881 42 PDALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L~~H 64 (384)
|+++|+|.+-||-|+|...|...
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~ 23 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTG 23 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Confidence 78999999999999998888764
No 42
>PRK13947 shikimate kinase; Provisional
Probab=32.72 E-value=42 Score=28.36 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=20.8
Q ss_pred CCEEEeCcCcchHHHHHHHHHcC
Q psy14881 42 PDALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L~~H 64 (384)
.+++|+|++=||-|.+...|+..
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999999874
No 43
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=32.57 E-value=39 Score=28.92 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=21.9
Q ss_pred EEEeCcCcchHHHHHHHHHcCCCCc
Q psy14881 44 ALIIGVKKSGTRALLEFIKLHPNVQ 68 (384)
Q Consensus 44 ~~IiG~~KsGTT~L~~~L~~HP~v~ 68 (384)
++|+|.|-||-|.+...|+.+-++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~ 26 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 6899999999999999999876643
No 44
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=31.96 E-value=47 Score=32.13 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.1
Q ss_pred CCCEEEeCcCcchHHHHHHHHHcCCCCcC
Q psy14881 41 LPDALIIGVKKSGTRALLEFIKLHPNVQA 69 (384)
Q Consensus 41 lP~~~IiG~~KsGTT~L~~~L~~HP~v~~ 69 (384)
.+.++|||+.=-+-.-|.++|..||++-.
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~ 30 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVEL 30 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEE
Confidence 46799999988888889999999999863
No 45
>KOG3922|consensus
Probab=31.70 E-value=33 Score=32.37 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=25.1
Q ss_pred EEEEecCchhhhhhhhhhhccC---------CchhhhhcHHHHHhhc
Q psy14881 185 LIVVVRDPVTRAISDYTQSSSK---------KPEYLRKSFADLFYIN 222 (384)
Q Consensus 185 ~I~~~RdP~~r~~S~~~~~~~~---------~~~~~~~~f~~~~~~~ 222 (384)
-|.+.|||++|.+|.|..+.-. .+..-..+|++|+...
T Consensus 163 YINvIRdPveRllS~yyflRfgd~yr~~l~r~~~g~~~tfdeCvl~g 209 (361)
T KOG3922|consen 163 YINVIRDPVERLLSYYYFLRFGDNYREGLPRLPAGNKETFDECVLEG 209 (361)
T ss_pred EEeeeccHHHHHHhHhhhhccccccccCcccCCCCCcccHHHHHHCC
Confidence 3678999999999998764311 1111126899998543
No 46
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=30.93 E-value=42 Score=29.19 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.7
Q ss_pred CEEEeCcCcchHHHHHHHHHcC
Q psy14881 43 DALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~H 64 (384)
.++|+|++=||.|+++..|++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999987
No 47
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=30.80 E-value=51 Score=28.41 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEeCcCcchHHHHHHHH-HcCCCCc
Q psy14881 44 ALIIGVKKSGTRALLEFI-KLHPNVQ 68 (384)
Q Consensus 44 ~~IiG~~KsGTT~L~~~L-~~HP~v~ 68 (384)
++|+|+.-||.++|...| ..+|+.+
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhccccc
Confidence 789999999999998866 6788754
No 48
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=30.25 E-value=47 Score=27.62 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=18.6
Q ss_pred CCEEEeCcCcchHHHHHHHHHc
Q psy14881 42 PDALIIGVKKSGTRALLEFIKL 63 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L~~ 63 (384)
|.+.|+|.+-+|=|+|...|..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~ 22 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTR 22 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhc
Confidence 7899999999998877777764
No 49
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=30.01 E-value=33 Score=31.63 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=20.7
Q ss_pred CCCEEEeCcCcch-HHHHHHHHHcCCCC
Q psy14881 41 LPDALIIGVKKSG-TRALLEFIKLHPNV 67 (384)
Q Consensus 41 lP~~~IiG~~KsG-TT~L~~~L~~HP~v 67 (384)
-=+++|+|..-|| ||.|..+|...|.-
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ceEEEEECCCccccchHHHHHhhhcccc
Confidence 4579999999999 66777777766544
No 50
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=29.80 E-value=50 Score=31.84 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=18.6
Q ss_pred CCCCEEEeCcCcch-HHHHHHHHHcCC
Q psy14881 40 HLPDALIIGVKKSG-TRALLEFIKLHP 65 (384)
Q Consensus 40 ~lP~~~IiG~~KsG-TT~L~~~L~~HP 65 (384)
.--+++|+|..-|| ||.|..+|..-|
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 34589999999999 555555555555
No 51
>PRK14532 adenylate kinase; Provisional
Probab=29.63 E-value=47 Score=28.67 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=22.4
Q ss_pred CEEEeCcCcchHHHHHHHHHcCCCCc
Q psy14881 43 DALIIGVKKSGTRALLEFIKLHPNVQ 68 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~HP~v~ 68 (384)
+++|+|+|=||-|.+.+.|+...++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~ 27 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMV 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 48999999999999999999776543
No 52
>PRK00625 shikimate kinase; Provisional
Probab=29.50 E-value=42 Score=28.98 Aligned_cols=25 Identities=8% Similarity=0.207 Sum_probs=21.9
Q ss_pred CEEEeCcCcchHHHHHHHHHcCCCC
Q psy14881 43 DALIIGVKKSGTRALLEFIKLHPNV 67 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~HP~v 67 (384)
+++++|.|=||=|.+...|+.+-++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987543
No 53
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=29.17 E-value=45 Score=28.66 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=16.1
Q ss_pred CEEEeCcCcch-HHHHHHHHHc
Q psy14881 43 DALIIGVKKSG-TRALLEFIKL 63 (384)
Q Consensus 43 ~~~IiG~~KsG-TT~L~~~L~~ 63 (384)
++||.|.+-+| ||.|..++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 48999999999 7777777664
No 54
>PLN02459 probable adenylate kinase
Probab=28.75 E-value=63 Score=30.03 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=30.5
Q ss_pred cHHHHHHHHHhhCCCC-cEEEEEccccccChHHHHHHHHhhcCCcee
Q psy14881 238 LYARYLDTWLKYFPLS-QFIFISGETLIVDPAAEMKRLQDFLGLKVI 283 (384)
Q Consensus 238 ~Y~~~l~~w~~~f~~e-qilvl~yEdl~~dP~~~l~~I~~FLGl~~~ 283 (384)
.|.......+++|... .++.|+. ..++.++.++|.+.|.++..
T Consensus 211 ~Y~~~t~pv~~~Y~~~g~l~~id~---~~~~~eV~~~i~~~l~~~~~ 254 (261)
T PLN02459 211 VYKEESQPVEDFYRKRGKLLEFEL---PGGIPETWPRLLQALNLDDE 254 (261)
T ss_pred HHHHHhHHHHHHHHhcCCeEEEeC---CCCHHHHHHHHHHHhchhhh
Confidence 5677777777777543 3445553 36788999999999999864
No 55
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=28.33 E-value=63 Score=30.70 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=28.1
Q ss_pred ccccCCCCEEEeCcCcch-HHHHHHHHHcCCCCcC
Q psy14881 36 QASRHLPDALIIGVKKSG-TRALLEFIKLHPNVQA 69 (384)
Q Consensus 36 ~~~~~lP~~~IiG~~KsG-TT~L~~~L~~HP~v~~ 69 (384)
.+..+.|+++|+|-.-.| ||.+.++...||....
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d 90 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD 90 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC
Confidence 456789999999999999 6777789999996543
No 56
>PRK00279 adk adenylate kinase; Reviewed
Probab=28.21 E-value=50 Score=29.38 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.0
Q ss_pred EEEeCcCcchHHHHHHHHHcCCCCc
Q psy14881 44 ALIIGVKKSGTRALLEFIKLHPNVQ 68 (384)
Q Consensus 44 ~~IiG~~KsGTT~L~~~L~~HP~v~ 68 (384)
++|+|.|-||-|.+...|+.+-++.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~ 27 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIP 27 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 8999999999999999999876543
No 57
>PRK02496 adk adenylate kinase; Provisional
Probab=28.19 E-value=47 Score=28.58 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=19.9
Q ss_pred EEEeCcCcchHHHHHHHHHcCC
Q psy14881 44 ALIIGVKKSGTRALLEFIKLHP 65 (384)
Q Consensus 44 ~~IiG~~KsGTT~L~~~L~~HP 65 (384)
++|+|.+-||-|++.+.|+..-
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998654
No 58
>KOG3955|consensus
Probab=27.99 E-value=45 Score=31.05 Aligned_cols=25 Identities=32% Similarity=0.679 Sum_probs=20.7
Q ss_pred CeEEEEeeCchhhhhhhhhhhhhhc
Q psy14881 125 VKLIVVVRDPVTRAISDYTQSSRNQ 149 (384)
Q Consensus 125 ~KiI~ilRdPv~ra~S~y~~~~~~~ 149 (384)
--.|.+||||++|-+|.|.|..+.+
T Consensus 159 ~fY~t~Lr~p~~r~~se~rhvqrga 183 (361)
T KOG3955|consen 159 FHYITILRDPVSRYLSEWRHVQRGA 183 (361)
T ss_pred eEEEEEecCchHHHHHHHHHHHhcc
Confidence 3358889999999999999987654
No 59
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=27.94 E-value=50 Score=34.19 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=26.2
Q ss_pred ccCCCCEEEeCcCcchHHHHHHHHHcCCCC
Q psy14881 38 SRHLPDALIIGVKKSGTRALLEFIKLHPNV 67 (384)
Q Consensus 38 ~~~lP~~~IiG~~KsGTT~L~~~L~~HP~v 67 (384)
..+.|.+++||++=||-|++...|+..-+.
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~ 32 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRL 32 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468899999999999999999999976443
No 60
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=27.84 E-value=50 Score=28.85 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=20.2
Q ss_pred CCCCEEEeCcCcchHHHHHHHHHcCC
Q psy14881 40 HLPDALIIGVKKSGTRALLEFIKLHP 65 (384)
Q Consensus 40 ~lP~~~IiG~~KsGTT~L~~~L~~HP 65 (384)
+.|.++|+|..=||=|+|+..|....
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~ 27 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGK 27 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998763
No 61
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=27.39 E-value=39 Score=31.49 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=21.1
Q ss_pred CCCEEEeCcCcchHHHHHHHHHc
Q psy14881 41 LPDALIIGVKKSGTRALLEFIKL 63 (384)
Q Consensus 41 lP~~~IiG~~KsGTT~L~~~L~~ 63 (384)
.-|++++|..|||=|=|.-||+.
T Consensus 143 ~ADIiLvGVSRtsKTPlS~YLA~ 165 (269)
T PRK05339 143 EADVILVGVSRTSKTPTSLYLAN 165 (269)
T ss_pred cCCEEEECcCCCCCcHHHHHHHc
Confidence 44899999999999999999997
No 62
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=27.32 E-value=43 Score=26.35 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=19.2
Q ss_pred EEEeCcCcchHHHHHHHHHcC
Q psy14881 44 ALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 44 ~~IiG~~KsGTT~L~~~L~~H 64 (384)
++|.|++-||=|+|.+.|..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 589999999999999999976
No 63
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=26.66 E-value=64 Score=26.56 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=20.4
Q ss_pred CCCEEEeCcCcchHHHHHHHHHcCC
Q psy14881 41 LPDALIIGVKKSGTRALLEFIKLHP 65 (384)
Q Consensus 41 lP~~~IiG~~KsGTT~L~~~L~~HP 65 (384)
.+.+.|+|.+.+|-|+|...|..+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~ 26 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEE 26 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc
Confidence 3568999999999888888877654
No 64
>PRK06217 hypothetical protein; Validated
Probab=25.99 E-value=56 Score=28.17 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=21.5
Q ss_pred CEEEeCcCcchHHHHHHHHHcCCCC
Q psy14881 43 DALIIGVKKSGTRALLEFIKLHPNV 67 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~HP~v 67 (384)
.++|+|.+=||-|+|...|+..-++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3899999999999999999976443
No 65
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=25.90 E-value=65 Score=26.29 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=15.3
Q ss_pred CEEEeCcCcchHHHHHHHHH
Q psy14881 43 DALIIGVKKSGTRALLEFIK 62 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~ 62 (384)
.++|+|.+-+|=|+|...|.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~ 22 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLI 22 (162)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999666655554
No 66
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=25.82 E-value=58 Score=28.56 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=14.5
Q ss_pred cCCCCEEEeCcCcchHHHHHHHH
Q psy14881 39 RHLPDALIIGVKKSGTRALLEFI 61 (384)
Q Consensus 39 ~~lP~~~IiG~~KsGTT~L~~~L 61 (384)
...|+++|+|.+.||.|.+.+.|
T Consensus 36 ~~~~h~li~G~tgsGKS~~l~~l 58 (205)
T PF01580_consen 36 KKNPHLLIAGATGSGKSTLLRTL 58 (205)
T ss_dssp GGS-SEEEE--TTSSHHHHHHHH
T ss_pred CCCceEEEEcCCCCCccHHHHHH
Confidence 45679999999999966555433
No 67
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=25.73 E-value=97 Score=28.39 Aligned_cols=54 Identities=19% Similarity=0.067 Sum_probs=41.5
Q ss_pred ccccccccHHHHHHHHHhhCCCCcEEEEEcccccc---Ch--HHHHHHHHhhcCCceec
Q psy14881 231 WGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIV---DP--AAEMKRLQDFLGLKVII 284 (384)
Q Consensus 231 ~~~l~~g~Y~~~l~~w~~~f~~eqilvl~yEdl~~---dP--~~~l~~I~~FLGl~~~~ 284 (384)
-+.+..|.+...|..|+.+-...-.++++.||.-. .+ ...+.+.+++||++++.
T Consensus 11 tG~LHlG~~~~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~ 69 (239)
T cd00808 11 TGFLHIGGARTALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDE 69 (239)
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCc
Confidence 35678899999999998776667788999999522 11 25677889999999974
No 68
>COG1084 Predicted GTPase [General function prediction only]
Probab=25.71 E-value=96 Score=29.84 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=25.5
Q ss_pred CCCCEEEeCcCcchHHHHHHHHH-cCCCCcC
Q psy14881 40 HLPDALIIGVKKSGTRALLEFIK-LHPNVQA 69 (384)
Q Consensus 40 ~lP~~~IiG~~KsGTT~L~~~L~-~HP~v~~ 69 (384)
.+|.++|.|+|-.|-|+|...|+ .-|+|..
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~ 197 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP 197 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCC
Confidence 68999999999999888877776 5688875
No 69
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=25.65 E-value=20 Score=23.97 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=25.3
Q ss_pred cCCcccccccccccccccCCCCEEEeCcCcchHHHH
Q psy14881 22 NASPKYKFLRDENLQASRHLPDALIIGVKKSGTRAL 57 (384)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~lP~~~IiG~~KsGTT~L 57 (384)
-|+|+.=--..+..-+.+++-+++|+|+.-+||-.+
T Consensus 5 ~w~PqSWM~DLrS~I~~~~I~ql~ipGsHns~tygI 40 (51)
T PF03490_consen 5 AWHPQSWMSDLRSSIGEMAITQLFIPGSHNSGTYGI 40 (51)
T ss_pred ccCcHHHHHHHHHHHhcceeeeEEeccccccccccc
Confidence 477765222233556678899999999999998654
No 70
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=25.60 E-value=53 Score=27.25 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=15.6
Q ss_pred CCEEEeCcCcchHHHHHHHH
Q psy14881 42 PDALIIGVKKSGTRALLEFI 61 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L 61 (384)
|-+.|+|...||=|+|...|
T Consensus 1 pvv~VvG~~~sGKTTl~~~L 20 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKL 20 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 56889999999977766655
No 71
>PRK14531 adenylate kinase; Provisional
Probab=25.58 E-value=56 Score=28.21 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=22.6
Q ss_pred CEEEeCcCcchHHHHHHHHHcCCCCc
Q psy14881 43 DALIIGVKKSGTRALLEFIKLHPNVQ 68 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~HP~v~ 68 (384)
.++|+|.|-||-|++.+.|+..-++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~ 29 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLR 29 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 58999999999999999998876553
No 72
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=25.53 E-value=74 Score=26.24 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=18.2
Q ss_pred CEEEeCcCcchHHHHHHHHHcC
Q psy14881 43 DALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~H 64 (384)
.+.|+|.+.||-|+|...|...
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999988888877653
No 73
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=25.47 E-value=57 Score=27.60 Aligned_cols=25 Identities=8% Similarity=0.157 Sum_probs=21.6
Q ss_pred CEEEeCcCcchHHHHHHHHHcCCCC
Q psy14881 43 DALIIGVKKSGTRALLEFIKLHPNV 67 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~HP~v 67 (384)
.++|+|.+=||.|++...|+....+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999976443
No 74
>PRK03839 putative kinase; Provisional
Probab=25.35 E-value=61 Score=27.75 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=21.5
Q ss_pred EEEeCcCcchHHHHHHHHHcCCCC
Q psy14881 44 ALIIGVKKSGTRALLEFIKLHPNV 67 (384)
Q Consensus 44 ~~IiG~~KsGTT~L~~~L~~HP~v 67 (384)
++|+|+|=||=|++...|+.+-++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 899999999999999999987554
No 75
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=25.24 E-value=77 Score=22.46 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=18.7
Q ss_pred EEEeCcCcchHHHHHHHHHcC
Q psy14881 44 ALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 44 ~~IiG~~KsGTT~L~~~L~~H 64 (384)
+.|.|.+=||-|.+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999864
No 76
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=25.05 E-value=35 Score=21.90 Aligned_cols=15 Identities=40% Similarity=0.640 Sum_probs=12.2
Q ss_pred cchHHHHHHHH-HcCC
Q psy14881 51 KSGTRALLEFI-KLHP 65 (384)
Q Consensus 51 KsGTT~L~~~L-~~HP 65 (384)
++|||.|..-| ..||
T Consensus 30 ~~~ts~l~~HL~~~hp 45 (45)
T PF02892_consen 30 SGGTSNLKRHLKKKHP 45 (45)
T ss_dssp -SSTHHHHHHHHHTTH
T ss_pred CCcHHHHHHhhhhhCc
Confidence 89999999999 6675
No 77
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=25.02 E-value=85 Score=22.36 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=18.5
Q ss_pred CHHHHHHHHhhhhHhHHHHHH
Q psy14881 356 DESILDRLTQFYRPFNLKFYQ 376 (384)
Q Consensus 356 ~~~~~~~L~~~y~p~~~~L~~ 376 (384)
|++..+++.++|+|++.+|+-
T Consensus 11 D~~A~~~IL~~y~~yI~kls~ 31 (65)
T PF12645_consen 11 DPEAMEEILKHYEPYISKLST 31 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999998864
No 78
>PTZ00088 adenylate kinase 1; Provisional
Probab=24.88 E-value=61 Score=29.43 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=22.8
Q ss_pred CEEEeCcCcchHHHHHHHHHcCCCCc
Q psy14881 43 DALIIGVKKSGTRALLEFIKLHPNVQ 68 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~HP~v~ 68 (384)
.++|+|+|-||-|.+...|+++-++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~ 33 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLK 33 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 39999999999999999999876654
No 79
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=24.70 E-value=81 Score=32.30 Aligned_cols=47 Identities=15% Similarity=0.405 Sum_probs=31.8
Q ss_pred ccCCccccccccccc-----ccccCCCCEEEeCcCcchHHHHHHHHH-cCCCC
Q psy14881 21 RNASPKYKFLRDENL-----QASRHLPDALIIGVKKSGTRALLEFIK-LHPNV 67 (384)
Q Consensus 21 ~~~~~~~~~~~~~~~-----~~~~~lP~~~IiG~~KsGTT~L~~~L~-~HP~v 67 (384)
+|..|+++..-.++- ...+.+.++.|||.+-+|=|+|.+.|+ ..|.|
T Consensus 134 ~~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkI 186 (500)
T PRK12296 134 ARKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKI 186 (500)
T ss_pred cCCCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccc
Confidence 455666554444443 236778999999999999777766665 45555
No 80
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=24.64 E-value=71 Score=27.39 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=22.5
Q ss_pred cccCCCCEEEeCcCcchHHHHHHHHHc
Q psy14881 37 ASRHLPDALIIGVKKSGTRALLEFIKL 63 (384)
Q Consensus 37 ~~~~lP~~~IiG~~KsGTT~L~~~L~~ 63 (384)
....+|++.|+|.+.+|=|+|-..|..
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~ 46 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTN 46 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 455889999999999997777777765
No 81
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=23.85 E-value=70 Score=26.46 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=19.0
Q ss_pred CCEEEeCcCcchHHHHHHHHHcC
Q psy14881 42 PDALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L~~H 64 (384)
-.+.|+|.+.||-|+|.+.|..+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999988888877654
No 82
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.84 E-value=39 Score=31.34 Aligned_cols=25 Identities=16% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCCEEEeCcCcchHHHHHHHHHcCC
Q psy14881 41 LPDALIIGVKKSGTRALLEFIKLHP 65 (384)
Q Consensus 41 lP~~~IiG~~KsGTT~L~~~L~~HP 65 (384)
.-|+++||..|||-|-+..||+.+-
T Consensus 144 ~ADvILvGVSRtsKTPtS~YLA~q~ 168 (273)
T COG1806 144 EADVILVGVSRTSKTPTSLYLALQG 168 (273)
T ss_pred ccCEEEEeeccCCCCchHHHHHHhc
Confidence 3489999999999999999999654
No 83
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=23.68 E-value=72 Score=27.65 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=21.1
Q ss_pred CCEEEeCcCcchHHHHHHHHHcC
Q psy14881 42 PDALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L~~H 64 (384)
++++.||++=||=|++.+.|++.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~ 25 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKA 25 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHH
Confidence 57999999999999999999974
No 84
>PLN02200 adenylate kinase family protein
Probab=23.39 E-value=82 Score=28.62 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=22.0
Q ss_pred CEEEeCcCcchHHHHHHHHHcCCCC
Q psy14881 43 DALIIGVKKSGTRALLEFIKLHPNV 67 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~HP~v 67 (384)
.++|+|+|=||-|.+...|+.+-++
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g~ 69 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFGF 69 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999987655
No 85
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=22.76 E-value=85 Score=26.25 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=17.7
Q ss_pred CCEEEeCcCcchHHHHHHHHHc
Q psy14881 42 PDALIIGVKKSGTRALLEFIKL 63 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L~~ 63 (384)
..+.|+|.+.||-|+|...|..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~ 23 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK 23 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999997777776664
No 86
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=22.68 E-value=77 Score=27.23 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.1
Q ss_pred CEEEeCcCcchHHHHHHHHHcC
Q psy14881 43 DALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~H 64 (384)
.++|+|.++||=|.+...|...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~ 24 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ 24 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 4799999999999999888754
No 87
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=22.66 E-value=61 Score=32.20 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=25.2
Q ss_pred hhhhhcCC-cceEEEEecCchhhhhhhhhhhc
Q psy14881 174 SRVKKMNP-YVKLIVVVRDPVTRAISDYTQSS 204 (384)
Q Consensus 174 ~~i~~~~p-~ak~I~~~RdP~~r~~S~~~~~~ 204 (384)
..+.++.| ++++|.|+|||+....|.|....
T Consensus 139 ~~~~~lmP~dt~yiTILRdP~~~feS~f~Yy~ 170 (402)
T PF06990_consen 139 PEVRKLMPPDTKYITILRDPVSHFESSFNYYK 170 (402)
T ss_pred HHHHHhCCCCCeEEEEEcCHHHHHHhHHHHhh
Confidence 45667776 78999999999999999887653
No 88
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=22.37 E-value=79 Score=26.46 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=18.4
Q ss_pred CCEEEeCcCcchHHHHHHHHHcC
Q psy14881 42 PDALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L~~H 64 (384)
-.++|+|.+.+|-|+|.+.|...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999987777777643
No 89
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=22.26 E-value=1.2e+02 Score=30.44 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=23.3
Q ss_pred ccCCCCEEEeCcCcchHHHHHHHH-HcCCCCc
Q psy14881 38 SRHLPDALIIGVKKSGTRALLEFI-KLHPNVQ 68 (384)
Q Consensus 38 ~~~lP~~~IiG~~KsGTT~L~~~L-~~HP~v~ 68 (384)
.+.++++-+||.+-+|=|+|-+.| .+.|.|.
T Consensus 155 lk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa 186 (424)
T PRK12297 155 LKLLADVGLVGFPNVGKSTLLSVVSNAKPKIA 186 (424)
T ss_pred ecccCcEEEEcCCCCCHHHHHHHHHcCCCccc
Confidence 567889999999999955555555 5667664
No 90
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=22.14 E-value=86 Score=29.96 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=24.3
Q ss_pred CCEEEeCcCcchHHHHHHHHHcCCCCcC
Q psy14881 42 PDALIIGVKKSGTRALLEFIKLHPNVQA 69 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L~~HP~v~~ 69 (384)
+.+.|+|+.=-+-..|.++|..||++-.
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el 29 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIEL 29 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEE
Confidence 5789999987777889999999999864
No 91
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=21.39 E-value=69 Score=31.77 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.1
Q ss_pred CCCCEEEeCcCcchHHHHHHHHHcCCC
Q psy14881 40 HLPDALIIGVKKSGTRALLEFIKLHPN 66 (384)
Q Consensus 40 ~lP~~~IiG~~KsGTT~L~~~L~~HP~ 66 (384)
-...+.|+|..-||.|+|.+.|..|=+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 345699999999999999999998743
No 92
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=21.13 E-value=87 Score=24.94 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=19.4
Q ss_pred CCEEEeCcCcchHHHHHHHHHcCC
Q psy14881 42 PDALIIGVKKSGTRALLEFIKLHP 65 (384)
Q Consensus 42 P~~~IiG~~KsGTT~L~~~L~~HP 65 (384)
.++.++|.+-||-|+|.+.|....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999888888776543
No 93
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=21.07 E-value=93 Score=25.53 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=16.8
Q ss_pred CEEEeCcCcchHHHHHHHHHcC
Q psy14881 43 DALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~H 64 (384)
.++|+|.+.||=|+|.+.|..+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999966666666544
No 94
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=20.98 E-value=1e+02 Score=24.98 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=16.8
Q ss_pred CEEEeCcCcchHHHHHHHHHcC
Q psy14881 43 DALIIGVKKSGTRALLEFIKLH 64 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~H 64 (384)
.++|+|.+.||=|+|.+.|...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999977776666543
No 95
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=20.91 E-value=96 Score=25.40 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=18.2
Q ss_pred EEEeCcCcchHHHHHHHHHcCC
Q psy14881 44 ALIIGVKKSGTRALLEFIKLHP 65 (384)
Q Consensus 44 ~~IiG~~KsGTT~L~~~L~~HP 65 (384)
++|+|.+.||-|+|...|....
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~ 23 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE 23 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6899999999888888776543
No 96
>PRK15453 phosphoribulokinase; Provisional
Probab=20.88 E-value=91 Score=29.45 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=21.9
Q ss_pred cCCCCEEEeCcCcchHHHHHHHHHc
Q psy14881 39 RHLPDALIIGVKKSGTRALLEFIKL 63 (384)
Q Consensus 39 ~~lP~~~IiG~~KsGTT~L~~~L~~ 63 (384)
++-|.+.|.|.+=||+|++.+.|.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4668899999999999999998874
No 97
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=20.54 E-value=93 Score=24.78 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=18.2
Q ss_pred EEEeC-cCcchHHHHHHHHHcCCCCcC
Q psy14881 44 ALIIG-VKKSGTRALLEFIKLHPNVQA 69 (384)
Q Consensus 44 ~~IiG-~~KsGTT~L~~~L~~HP~v~~ 69 (384)
+.||| ..-.|+.. .++|..||.+-.
T Consensus 2 V~IvGAtG~vG~~l-~~lL~~hp~~e~ 27 (121)
T PF01118_consen 2 VAIVGATGYVGREL-LRLLAEHPDFEL 27 (121)
T ss_dssp EEEESTTSHHHHHH-HHHHHHTSTEEE
T ss_pred EEEECCCCHHHHHH-HHHHhcCCCccE
Confidence 67999 55666555 577777998864
No 98
>PRK14527 adenylate kinase; Provisional
Probab=20.40 E-value=92 Score=27.00 Aligned_cols=39 Identities=18% Similarity=0.361 Sum_probs=27.2
Q ss_pred cHHHHHHHHHhhCCC-CcEEEEEccccccChHHHHHHHHhhcC
Q psy14881 238 LYARYLDTWLKYFPL-SQFIFISGETLIVDPAAEMKRLQDFLG 279 (384)
Q Consensus 238 ~Y~~~l~~w~~~f~~-eqilvl~yEdl~~dP~~~l~~I~~FLG 279 (384)
.|......-+++|.. ..+..|+.+ .++..+.++|+..||
T Consensus 152 ~y~~~~~~v~~~y~~~~~~~~id~~---~~~~~v~~~i~~~l~ 191 (191)
T PRK14527 152 VYREQTQPLVDYYEARGHLKRVDGL---GTPDEVYARILKALG 191 (191)
T ss_pred HHHHHhHHHHHHHHhcCCEEEEECC---CCHHHHHHHHHHhhC
Confidence 466666666666653 457778754 566788888988887
No 99
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=20.08 E-value=94 Score=25.78 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=16.7
Q ss_pred CEEEeCcCcchHHHHHHHHHc
Q psy14881 43 DALIIGVKKSGTRALLEFIKL 63 (384)
Q Consensus 43 ~~~IiG~~KsGTT~L~~~L~~ 63 (384)
.+.++|.+.||-|+|.+.|..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999998877766653
Done!