RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14881
         (384 letters)



>gnl|CDD|216059 pfam00685, Sulfotransfer_1, Sulfotransferase domain. 
          Length = 254

 Score =  118 bits (297), Expect = 5e-31
 Identities = 61/294 (20%), Positives = 96/294 (32%), Gaps = 71/294 (24%)

Query: 41  LPDALIIGVKKSGTRALLEFIKLHPNVQAPS--SEMHFFDK-NYVRGLSWYRNQMPLTLE 97
             D LI+   KSGT  L E + L PN        E H F+  N    L WY   +   + 
Sbjct: 1   DDDVLIVTYPKSGTTWLQEILSLIPNRGDFEKFEEPHLFNPHNRSPFLEWYDLFVIFDVA 60

Query: 98  GQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQ 157
                            P R+  +                             P  ++  
Sbjct: 61  ---------------EGPVRLNALPS---------------------------PRIIKTH 78

Query: 158 MTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFAD 217
           + +   P               +P  K+I +VR+P   A+S Y      K      +  +
Sbjct: 79  LPLHLLPKSL-----------WDPNAKIIYLVRNPKDVAVSYYHFFRMAKILKAPGTPFE 127

Query: 218 LFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDF 277
                     +   G V  G Y  ++  W K  P    +F+  E L  DP  E+K++ +F
Sbjct: 128 FV-------EDFLNGKVNCGSYFDHVKGWWKLRPPGNILFLRYEDLKKDPRGEIKKIAEF 180

Query: 278 LGLK-----VIITEKHFYFNTTKGFPCLMKSETLEDFLGLKV---IITEKHFYF 323
           LG+      +    KH  F   KG PCL  S+  +  +       ++ +   YF
Sbjct: 181 LGIPLTEEELDKIVKHLSFENMKGNPCLNYSKLPKHEVSPFFRKGLVGDWKNYF 234


>gnl|CDD|177822 PLN02164, PLN02164, sulfotransferase.
          Length = 346

 Score = 32.2 bits (73), Expect = 0.42
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 24/106 (22%)

Query: 184 KLIVVVRDPVTRAISDYTQSSSKKPEY-----LRKSFADLFYINGTNVVNTRWGIVRIGL 238
           K++ + RDP    IS +T    ++ +      L +SF D+F   G +V            
Sbjct: 167 KMVYIWRDPKDTFISMWTFLHKERSQQGPLNSLEESF-DMF-CRGLSV------------ 212

Query: 239 YARYLDTWLKYFPL-----SQFIFISGETLIVDPAAEMKRLQDFLG 279
           Y  YLD  L Y+        + +F+  ET+  DP   +KRL +F+G
Sbjct: 213 YGPYLDHVLGYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMG 258


>gnl|CDD|236663 PRK10215, PRK10215, hypothetical protein; Provisional.
          Length = 218

 Score = 31.7 bits (72), Expect = 0.51
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 316 ITEKHFYFNTTKGFPCLMKSETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFY 375
             E+     T  GF C    +       L   KG IH K       ++  FY PF ++FY
Sbjct: 122 NNEEEKALATGYGFIC--GVQHETCTRSLENLKGTIHQKNKNMDYSKVMAFYHPFTVRFY 179

Query: 376 Q 376
           +
Sbjct: 180 E 180


>gnl|CDD|219491 pfam07632, DUF1593, Protein of unknown function (DUF1593).  A
           family of proteins in Rhodopirellula baltica that are
           predicted to be secreted. Also, a member has been
           identified in Caulobacter crescentus. These proteins mat
           be related to pfam01156.
          Length = 260

 Score = 29.5 bits (67), Expect = 2.8
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 9/52 (17%)

Query: 210 YLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGE 261
           ++RK+F DLFYI   +V                  TW          ++S E
Sbjct: 165 WIRKNFPDLFYIASESVHGGNQ---------YGAATWKGIVGGPDNSYVSKE 207


>gnl|CDD|221833 pfam12889, DUF3829, Protein of unknown function (DUF3829).  This is
           a small family of proteins from several bacterial
           species, whose function is not known. It may, however,
           be related to the GvpL_GvpF family of proteins,
           pfam06386.
          Length = 277

 Score = 28.9 bits (65), Expect = 4.0
 Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 24/116 (20%)

Query: 117 RVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRV 176
            ++K N Y+K    +   +  +IS Y       +     G  T  +           S  
Sbjct: 5   EIEKYNAYIKAYNSLNGGIVSSISSY----FEWVGDLKAGPKTGDEISIPGPYSLSDSLE 60

Query: 177 KKM--------------NPYVKLIVVVRD--PVTRAISDYTQSSSKKPEYLRKSFA 216
            K+                   L+  +++  P+   +  Y  S     +Y   +FA
Sbjct: 61  LKLKGAAANEPAMPELDEAAKDLLAALKELAPLFDELEAYYDSK----DYKDDNFA 112


>gnl|CDD|204660 pfam11479, Suppressor_P21, RNA silencing suppressor P21.  P21 is
           produced by Beet yellows virus to suppress the antiviral
           silencing response mounted by the host. P21 acts by
           binding directly to siRNA which is a mediator in the
           process. P21 has an octameric ring structure with a
           large central cavity.
          Length = 177

 Score = 27.8 bits (61), Expect = 7.5
 Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 135 VTRAISDYTQSSR-NQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVR 190
           ++  + ++ + +  N + +T+E +  M++ P+     RVPSR+ +M   ++  + VR
Sbjct: 36  ISECVDEFNELASFNHLLVTVEHREWMEQHPNQSSKLRVPSRIGEMLKEIRAFLKVR 92


>gnl|CDD|183969 PRK13314, PRK13314, heme-degrading monooxygenase IsdG; Provisional.
          Length = 107

 Score = 26.8 bits (59), Expect = 8.4
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 16/75 (21%)

Query: 302 KSETLEDFLGLKVIITEKHFYF---------NTTKGFPCLMKSETLASPHCLGKNKGRIH 352
           K ET+  FLGL+V++T+    +         N  + F    KS    + H       +  
Sbjct: 27  KVETMPGFLGLEVLLTQNTVDYDEVTISTRWNAKEDFQGWTKSPAFKAAH-----SHQ-- 79

Query: 353 PKIDESILDRLTQFY 367
             + + ILD    +Y
Sbjct: 80  GGMPDYILDNKISYY 94


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,750,119
Number of extensions: 1911007
Number of successful extensions: 1557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1552
Number of HSP's successfully gapped: 15
Length of query: 384
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 285
Effective length of database: 6,546,556
Effective search space: 1865768460
Effective search space used: 1865768460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)