RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14881
(384 letters)
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate
biosynthesis, substrate specificity, glycoprotein, golgi
apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Length = 280
Score = 190 bits (482), Expect = 3e-58
Identities = 117/368 (31%), Positives = 170/368 (46%), Gaps = 96/368 (26%)
Query: 23 ASPKYKFLRDENL----QASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFD 78
S + L + LP A+IIGV+K GTRALLE + LHP V S E+HFFD
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMQQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFD 61
Query: 79 --KNYVRGLSWYRNQMPLTLEGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVT 136
+NY +G+ WYR +MP + Q+T+EK+P+YF+T+ VP R+ KMN +KL+++VR+P T
Sbjct: 62 NDENYGKGIEWYRKKMPFSYPQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPTT 121
Query: 137 RAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRA 196
RAISDYTQ + K + P+ + Y +
Sbjct: 122 RAISDYTQVLEG-------KERKNKTYYKFEKLAIDPNTCEVNTKYKAV----------R 164
Query: 197 ISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFI 256
S YT ++L R+L YFP+ QF
Sbjct: 165 TSIYT-------KHLE----------------------------RWLK----YFPIEQFH 185
Query: 257 FISGETLIVDPAAEMKRLQDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVII 316
+ G+ LI +P E++ ++ FL L I++ + YFN T+GF CL +E
Sbjct: 186 VVDGDRLITEPLPELQLVEKFLNLPPRISQYNLYFNATRGFYCLRFNEIF---------- 235
Query: 317 TEKHFYFNTTKGFPCLMKSETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQ 376
CL +KGRIHP++D S++ +L +F+ PFN KFYQ
Sbjct: 236 ------------------------NKCLAGSKGRIHPEVDPSVITKLRKFFHPFNQKFYQ 271
Query: 377 MTGIDFGW 384
+TG W
Sbjct: 272 ITGRTLNW 279
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1;
alpha-beta motif, substrate-binding cleft; HET: A3P CIT;
1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Length = 271
Score = 173 bits (440), Expect = 5e-52
Identities = 127/265 (47%), Positives = 168/265 (63%), Gaps = 33/265 (12%)
Query: 120 KMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKM 179
+++P V+ + R+ R+ MP TL+GQ+TM+KTPSYFVT+ P+R+ M
Sbjct: 38 RVHPDVRAVGAEPHFFDRSYDKGLAWYRDLMPRTLDGQITMEKTPSYFVTREAPARISAM 97
Query: 180 NPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLY 239
+ KLIVVVRDPVTRAISDYTQ+ SK+P+ + F +++T W ++IG+Y
Sbjct: 98 SKDTKLIVVVRDPVTRAISDYTQTLSKRPDIPT-FESLTFKNRTAGLIDTSWSAIQIGIY 156
Query: 240 ARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKVIITEKHFYFNTTKGFPC 299
A++L+ WL++FP+ Q +F+SGE LI DPA E+ R+QDFLGLK IIT+KHFYFN T
Sbjct: 157 AKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQDFLGLKRIITDKHFYFNKT----- 211
Query: 300 LMKSETLEDFLGLKVIITEKHFYFNTTKGFPCLMKSETLASPHCLGKNKGRIHPKIDESI 359
KGFPCL K+E + PHCLGK KGR HP+ID +
Sbjct: 212 ---------------------------KGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREV 244
Query: 360 LDRLTQFYRPFNLKFYQMTGIDFGW 384
+ RL +FYRPFNLKFYQMTG DFGW
Sbjct: 245 VRRLREFYRPFNLKFYQMTGHDFGW 269
Score = 120 bits (302), Expect = 7e-32
Identities = 72/117 (61%), Positives = 95/117 (81%)
Query: 36 QASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDKNYVRGLSWYRNQMPLT 95
+ S+ LP A+IIGVKK GTRALLEF+++HP+V+A +E HFFD++Y +GL+WYR+ MP T
Sbjct: 12 EGSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRAVGAEPHFFDRSYDKGLAWYRDLMPRT 71
Query: 96 LEGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPL 152
L+GQ+TMEKTPSYFVT+ P+R+ M+ KLIVVVRDPVTRAISDYTQ+ + +
Sbjct: 72 LDGQITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDI 128
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, alpha-beta-alpha sandwich;
HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Length = 311
Score = 173 bits (439), Expect = 2e-51
Identities = 60/352 (17%), Positives = 102/352 (28%), Gaps = 56/352 (15%)
Query: 36 QASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPS-SEMHFFDKNYVRGLSWYRNQMPL 94
P+ I+G K GT +L ++ HP++ P E HFF
Sbjct: 3 AMGVARPNFFIVGAAKCGTSSLDRYLSQHPDIYIPPKKEAHFFSIPDFPERFTGPGD--- 59
Query: 95 TLEGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTL 154
+ MN Y R Y
Sbjct: 60 ------------------------EGMNLYT----------IRDEDAY----MRLFDGVR 81
Query: 155 EGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKS 214
+ + + Y R+ P K+++++R+PV RA S Y + E L
Sbjct: 82 GERAVGEASVFYLFYPGTAQRMYDAYPDAKILIMLRNPVDRAFSAYMHLVRDERETLSFR 141
Query: 215 FADLFYINGTNV-VNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKR 273
+ W +GLYA + +L F Q I E DP ++
Sbjct: 142 ESLAKEEERIRQHYEPLWYYRAVGLYAAQVKRYLDVFGREQVKVILFEEFARDPVQVVRD 201
Query: 274 LQDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTKGFPCLM 333
FLG+ + G P S +L +F+ + E +
Sbjct: 202 CCAFLGVSTDFVPDTSIRHNESGVPK---SRSLYNFIAKPNALKEI---------VKPFI 249
Query: 334 KSETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTGIDF-GW 384
+ K+ +++ + + LT F+ P + + D W
Sbjct: 250 PAAVRERLGNRAKSMVLGRMEMEPDLREELTAFFAPDVARLEALIHRDLSAW 301
>1nst_A NST1, heparan sulfate N-deacetylase/N-sulfotransferase; PAP,
haparin sulfate, haparin sulfate biosynthesis,
glycoprotein; HET: A3P; 2.30A {Homo sapiens} SCOP:
c.37.1.5
Length = 325
Score = 172 bits (436), Expect = 7e-51
Identities = 67/352 (19%), Positives = 123/352 (34%), Gaps = 88/352 (25%)
Query: 38 SRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPS-SEMHFFDKNYVRGLSWYRNQMPLTL 96
P LIIG +K+GT AL F+ +HP++ + S F + + G ++++
Sbjct: 44 CDRFPKLLIIGPQKTGTTALYLFLGMHPDLSSNYPSSETFEEIQFFNGHNYHKG------ 97
Query: 97 EGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEG 156
++ +F +P
Sbjct: 98 -----IDWYMEFF---------------------------------------PIPSNTTS 113
Query: 157 QMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFA 216
+K+ +YF ++ P R + P K++ ++ +P RA S Y + K
Sbjct: 114 DFYFEKSANYFDSEVAPRRAAALLPKAKVLTILINPADRAYSWYQHQRAHDDPVALKYTF 173
Query: 217 DLFYINGTNVVNT----RWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMK 272
G++ + + + G YA +++ WL + +Q + + G+ L +PA M
Sbjct: 174 HEVITAGSDASSKLRALQNRCLVPGWYATHIERWLSAYHANQILVLDGKLLRTEPAKVMD 233
Query: 273 RLQDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTKGFPCL 332
+Q FLG+ I K F+ KGF C
Sbjct: 234 MVQKFLGVT-------------------------------NTIDYHKTLAFDPKKGFWCQ 262
Query: 333 MKSETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTGIDFGW 384
+ CLGK+KGR +P++D L +YR N++ ++
Sbjct: 263 LLEG--GKTKCLGKSKGRKYPEMDLDSRAFLKDYYRDHNIELSKLLYKMGQT 312
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif,
CO-FACT PAPS/PAP, heparan sulfate oligosaccharides,
golgi-localized transferase; HET: A3P NGY BDP SGN IDS;
1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Length = 269
Score = 163 bits (412), Expect = 6e-48
Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 35/237 (14%)
Query: 148 NQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKK 207
QMP + Q+T++KTP+YF + +VP R+ MNP ++L++++RDP R +SDYTQ
Sbjct: 67 TQMPFSSPHQLTVEKTPAYFTSPKVPERIHSMNPTIRLLLILRDPSERVLSDYTQVLYNH 126
Query: 208 PEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDP 267
+ + + +N + + LY ++ WL++FPL + G+ LI DP
Sbjct: 127 LQKHKPYPPIEDLLMRDGRLNLDYKALNRSLYHAHMLNWLRFFPLGHIHIVDGDRLIRDP 186
Query: 268 AAEMKRLQDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTK 327
E+++++ FL L I +FYFN TKGF CL S
Sbjct: 187 FPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGK---------------------- 224
Query: 328 GFPCLMKSETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTGIDFGW 384
CL ++KGR HP++D +LD+L +++ N KF+++ G F W
Sbjct: 225 -------------DRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKFFKLVGRTFDW 268
Score = 119 bits (300), Expect = 1e-31
Identities = 57/118 (48%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 36 QASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDK--NYVRGLSWYRNQMP 93
+++ LP +IIGV+K GTRALLE + LHP+V A +E+HFFD +Y +GL WY QMP
Sbjct: 11 GSTQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMP 70
Query: 94 LTLEGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMP 151
+ Q+T+EKTP+YF + +VP R+ MNP ++L++++RDP R +SDYTQ N +
Sbjct: 71 FSSPHQLTVEKTPAYFTSPKVPERIHSMNPTIRLLLILRDPSERVLSDYTQVLYNHLQ 128
>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold,
transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A*
3ap3_A*
Length = 337
Score = 42.5 bits (100), Expect = 1e-04
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 20/121 (16%)
Query: 162 KTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADL-FY 220
K P K + ++ P K +++VRD S T+ + L L +
Sbjct: 136 KDPFTL--KSSVY-LSRLFPNSKFLLMVRDGRASVHSMITRKVTIAGFDLSSYRDCLTKW 192
Query: 221 INGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGL 280
++ + + + E L++ P +K + DFLG+
Sbjct: 193 NK---------------AIEVMYAQCMEVGK-EKCLPVYYEQLVLHPRRSLKLILDFLGI 236
Query: 281 K 281
Sbjct: 237 A 237
>2zq5_A Putative uncharacterized protein; sulfotransferase fold; 2.00A
{Mycobacterium tuberculosis}
Length = 384
Score = 42.6 bits (99), Expect = 1e-04
Identities = 35/286 (12%), Positives = 78/286 (27%), Gaps = 40/286 (13%)
Query: 20 QRNASPKYKFLRDENLQASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDK 79
R S E++ + P + G+ ++GT AL + P Q + + +
Sbjct: 71 ARLLSQSAWKQYPEHVDVAIKRP-IFVTGLVRTGTTALHRLLGADPAHQGLHMWLAEYPQ 129
Query: 80 NYVRGLSWYRNQMPLTLEGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAI 139
+W N + L+ T + T ++ +L+ +++
Sbjct: 130 PRPPRETWESNPLYRQLDADFTQHHAENPGYTGLHFMAAYELEECWQLL-------RQSL 182
Query: 140 SDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRV-----------------------PSRV 176
+ + +P + TPSY +R +
Sbjct: 183 HSVSYEALAHVPSYADWLSRQDWTPSYCRHRRNLQLIGLNDAEKRWVLKNPSHLFALDAL 242
Query: 177 KKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRI 236
P ++ R T ++ L + + + +
Sbjct: 243 MATYPDALVVQTHRPVET-IMASMCS--------LAQHTTEGWSTKFVGAQIGADAMDTW 293
Query: 237 GLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKV 282
+ + +QF + LI DP + + GL +
Sbjct: 294 SRGLERFNAARAKYDSAQFYDVDYHDLIADPLGTVADIYRHFGLTL 339
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human
cytosolic sulfotransferase, resveratrol, SGC, cytoplasm,
lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens}
PDB: 2z5f_A*
Length = 298
Score = 41.7 bits (98), Expect = 2e-04
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 20/142 (14%)
Query: 154 LEGQMTMKKTPSYFVTKRVPS-RVKK------------MNPYVKLIVVVRDPVTRAISDY 200
LE + +T ++ PS R+ K K+I + R+ ++S Y
Sbjct: 84 LEMTLPGLRTSGIEQLEKNPSPRIVKTHLPTDLLPKSFWENNCKMIYLARNAKDVSVSYY 143
Query: 201 TQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISG 260
+ ++ + G V G + ++ W K +F+
Sbjct: 144 HFDLMNNLQPFPGTWEEYLE-------KFLTGKVAYGSWFTHVKNWWKKKEEHPILFLYY 196
Query: 261 ETLIVDPAAEMKRLQDFLGLKV 282
E + +P E+K++ FL +
Sbjct: 197 EDMKENPKEEIKKIIRFLEKNL 218
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 3e-04
Identities = 53/412 (12%), Positives = 103/412 (25%), Gaps = 129/412 (31%)
Query: 8 RHMTQNGQKTPLQRNASPKYKF----LRDENLQASRHLPDALIIGVKKSGTRALLEFIKL 63
+ N ++ K + L S+ + L++ L
Sbjct: 207 YQIDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLV----------LL---- 251
Query: 64 HPNVQAPSSEMHF----------FDKNYVRGLSWYRNQMPLTLEGQ---MTMEKTPSYFV 110
NVQ + F K LS ++L+ +T ++ S +
Sbjct: 252 --NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT-HISLDHHSMTLTPDEVKSLLL 308
Query: 111 ------TKRVPSRVKKMNPY-VKLIV-VVRDPVTRAISDYTQSSRNQMPLTLEGQMTMKK 162
+ +P V NP + +I +RD + ++ + +++ ++
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKL------TTIIES 361
Query: 163 TPSYFVTKRVPSRVKKMNPYVKLIVVVRDPV---TRAISDY-TQSSSKKPEYLRKSFADL 218
+ P+ +KM + +L V T +S +
Sbjct: 362 ----SLNVLEPAEYRKM--FDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 219 FYINGTNVVNTRWGIVRIGLYARYLDTWLK--------------YFPLSQFIFISGETLI 264
++V + I + + YL+ +K Y F + LI
Sbjct: 415 ------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF---DSDDLI 465
Query: 265 VDP--------------AAEMKRLQD----------FLGLKVIITEKHFYFNTTKGFPCL 300
E FL K+
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD----------STAWN 515
Query: 301 MKSETLEDFLGLKV---IITEKHFYF----NTTKGFPCLMKSET--LASPHC 343
L LK I + + N F L K E + S +
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLICSKYT 565
Score = 34.4 bits (78), Expect = 0.066
Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 51/222 (22%)
Query: 182 YVKLIVV-----VRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTR---WGI 233
Y ++ V V + + + D +S K E D ++ V T W +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI------DHIIMSKDAVSGTLRLFWTL 71
Query: 234 VRIG--LYARYLDTWLK--YFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKVIITEKHF 289
+ + ++++ L+ Y +F+ +T P+ + I ++
Sbjct: 72 LSKQEEMVQKFVEEVLRINY----KFLMSPIKTEQRQPSMMTRMY---------IEQRDR 118
Query: 290 YFNTTKGFPCLMKSETLEDFLGLKVIITE-KHFYFNTTKGFPCLM----KS----ETLAS 340
+N + F S L+ +L L+ + E + G + K+ + S
Sbjct: 119 LYNDNQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDG----VLGSGKTWVALDVCLS 173
Query: 341 PHCLGKNKGRIH------PKIDESILDRLTQFYRPFNLKFYQ 376
K +I E++L+ L + + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti
complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured
soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Length = 319
Score = 40.9 bits (96), Expect = 5e-04
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
Query: 184 KLIVVVRDPVTRAISDYTQSSSKKPEYLR-KSFADLFYINGTNVVNTRW--GIVRIGLYA 240
K++ +VR+P +S +S + + + + FA F N N G V +G +
Sbjct: 118 KVLYLVRNPRDMLLSSMRMASISRDDVEKSRDFARKFIANEGLGWNALGAGGGVGLGSWP 177
Query: 241 RYLDTWLK----YFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKVIITEK 287
+ +W + FP + + + E L DP A + +FL L + +
Sbjct: 178 ENVRSWTESSSDRFPNADVLTMRYEDLKGDPVARFSEIVEFLDLGGPVDIE 228
>2z6v_A Putative uncharacterized protein; sulfotransferase, unknown
function; HET: PLM; 2.60A {Mycobacterium avium}
Length = 414
Score = 41.0 bits (95), Expect = 5e-04
Identities = 41/282 (14%), Positives = 82/282 (29%), Gaps = 32/282 (11%)
Query: 20 QRNASPKYKFLRDENLQASRHLPDALIIGVKKSGTRALLEFIKLHPNVQA---------- 69
+R Y E L A P +++G+ ++GT + + P ++
Sbjct: 86 RRLQVHAYIQDHPEVLDAPVERP-LIVLGMPRTGTTVISYLLDQDPARRSLLHWQCVHPI 144
Query: 70 --PSSEMHFFDKNYVRGLSWYRNQMP-LTLEGQMTMEKTPSYFVTKRVPSRVKKMNPYVK 126
S+E D + L R + +T + T+ + +
Sbjct: 145 PPASTETLRTDPRCLALLDEQRKILDAVTRAKMPLPHWEDADGPTEDMFIHNQDFKGLSW 204
Query: 127 LIVVVRDPVTRAISD-------YTQSSRNQMPLTL-EGQMTMKKTPSYFVTKRVPSRVKK 178
+ D R + D Y R L K PS+ + K
Sbjct: 205 DSFLPTDRYARWLFDEADMSSTYEYQKRYLQVLQSTAPGSWSLKMPSHS---VHIEALLK 261
Query: 179 MNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGL 238
+ P +LI RDP S + + D + R + ++
Sbjct: 262 VFPDARLIWAHRDPYKATGSLCNLWRLPQSLVMNTELLDQTEMG-------RLAMWQMRY 314
Query: 239 YARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGL 280
+ + +F + ++ DP M+R+ ++
Sbjct: 315 HVDRPLRARERIGDERFFHMYYHEMMRDPMDVMRRIYEWADE 356
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 38.9 bits (91), Expect = 0.001
Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 172 VPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRW 231
+PS K + K+I V R+ +S Y K ++ +
Sbjct: 114 LPSSFWKNDC--KIIYVARNAKDVVVSYYYFYQMAKIHPEPGTWEEFLE-------KFMA 164
Query: 232 GIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKV 282
G V G + ++ +W + + +++ E + +P E++++ FL +
Sbjct: 165 GQVSFGPWYDHVKSWWEKRKEYRILYLFYEDMKENPKCEIQKILKFLEKDI 215
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH
trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium
smegmatis} SCOP: c.37.1.5
Length = 287
Score = 38.8 bits (89), Expect = 0.002
Identities = 38/243 (15%), Positives = 78/243 (32%), Gaps = 27/243 (11%)
Query: 45 LIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDKNYVRGLSWYRNQMPLTLEGQMTMEK 104
L++ ++SG+ L+E ++ P FF +S + +E Q +
Sbjct: 29 LVLASQRSGSTLLVESLRATGVAGEPQE---FFQYLPNTSMSPQPREWFADVEDQSILRL 85
Query: 105 TPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTP 164
K + + I V + NQ PL ++ K P
Sbjct: 86 LDPLIEGKPDLAPATI---WRDYIQTVGRTPNGVWG--GKLMWNQTPLLVQR---AKDLP 137
Query: 165 SYFVTKRVPSRVKKMNPYVKLIVVVR-DPVTRAIS----DYTQSSSKKPEYLRKSFADLF 219
+ + + + LI + R D V++A+S T+ +P+ +R + A
Sbjct: 138 DRSGSGLLSAIRDVVGSDPVLIHIHRPDVVSQAVSFWRAVQTRVWRGRPDPVRDARA--- 194
Query: 220 YINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLS--QFIFISGETLIVDPAAEMKRLQDF 277
+ I + + W +F + I + L + + + +
Sbjct: 195 ------EYHAGAIAHVITMLRAQEEGWRAWFTEENVEPIDVDYPYLWRNLTEVVGTVLEA 248
Query: 278 LGL 280
LG
Sbjct: 249 LGQ 251
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural
genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens}
PDB: 2h8k_A*
Length = 305
Score = 38.6 bits (90), Expect = 0.002
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 180 NPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGLY 239
K++ V R+P +S Y ++ + + G V G +
Sbjct: 130 KENCKIVYVARNPKDCLVSYYHFHRMASFMPDPQNLEEFYE-------KFMSGKVVGGSW 182
Query: 240 ARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKV 282
++ W + + +++ E + DP E++++ FL +
Sbjct: 183 FDHVKGWWAAKDMHRILYLFYEDIKKDPKREIEKILKFLEKDI 225
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta
estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus
musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A*
1g3m_A*
Length = 297
Score = 38.2 bits (89), Expect = 0.003
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 9/111 (8%)
Query: 172 VPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRW 231
+P+ + N K+I + R+ A+S Y KSF++
Sbjct: 116 LPASFWEKNC--KMIYLCRNAKDVAVSYYYFLLMITSYPNPKSFSEFVE-------KFMQ 166
Query: 232 GIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKV 282
G V G + ++ W + S+ +F+ E + D E+ +L +FL K
Sbjct: 167 GQVPYGSWYDHVKAWWEKSKNSRVLFMFYEDMKEDIRREVVKLIEFLERKP 217
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform
B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A
{Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Length = 299
Score = 38.2 bits (89), Expect = 0.003
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 172 VPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRW 231
K+I + R+P +S Y S + +
Sbjct: 118 FTKAFFSSKA--KVIYMGRNPRDVVVSLYHYSKIAGQLKDPGTPDQFLR-------DFLK 168
Query: 232 GIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKV 282
G V+ G + ++ WL+ F+FI+ E L D ++R+ FLG +
Sbjct: 169 GEVQFGSWFDHIKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLGRPL 219
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND;
1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A*
2qp3_A* 2qp4_A* 1efh_A*
Length = 293
Score = 38.1 bits (89), Expect = 0.003
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 172 VPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLF--YINGTNVVNT 229
P K+I ++R+P +S Y + K KS+ + F +
Sbjct: 113 FPKSFFSSKA--KVIYLMRNPRDVLVSGYFFWKNMKFLKKPKSWEEYFEWFC-------- 162
Query: 230 RWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKV 282
G V G + ++ W+ F+ +S E L D ++++ FLG +
Sbjct: 163 -QGTVLYGSWFDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKICQFLGKTL 214
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo
sapiens} SCOP: c.37.1.5
Length = 296
Score = 37.8 bits (88), Expect = 0.004
Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 172 VPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRW 231
+P + N + V R+ +S Y ++ + F
Sbjct: 115 LPPSFWENNCKF--LYVARNAKDCMVSYYHFQRMNHMLPDPGTWEEYFE-------TFIN 165
Query: 232 GIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKV 282
G V G + ++ W + Q +F+ E + DP E++++ F+G KV
Sbjct: 166 GKVVWGSWFDHVKGWWEMKDRHQILFLFYEDIKRDPKHEIRKVMQFMGKKV 216
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 36.6 bits (85), Expect = 0.008
Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 15/114 (13%)
Query: 172 VPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKS---FADLFYINGTNVVN 228
+PS + + K+I + R+P +S Y S + R + F F
Sbjct: 117 LPSDLHNGDS--KVIYMARNPKDLVVSYYQFHRSLRTMSYRGTFQEFCRRFM-------- 166
Query: 229 TRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKV 282
+ G + ++ + ++ S +F+ E + D +++L FLG+
Sbjct: 167 --NDKLGYGSWFEHVQEFWEHRMDSNVLFLKYEDMHRDLVTMVEQLARFLGVSC 218
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 36.4 bits (84), Expect = 0.011
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 172 VPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRW 231
K+I + R+P +S Y S + +
Sbjct: 116 FTKAFFSSKA--KVIYMGRNPRDVVVSLYHYSKIAGQLKDPGTPDQFLR-------DFLK 166
Query: 232 GIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKV 282
G V+ G + ++ WL+ F+FI+ E L D ++R+ FLG +
Sbjct: 167 GEVQFGSWFDHIKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLGRPL 217
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.012
Identities = 67/408 (16%), Positives = 125/408 (30%), Gaps = 123/408 (30%)
Query: 5 SRARHMTQNGQKTPLQRNASPK--YKFLRDENLQASRHLPDALIIGVKKSGTRALLEFIK 62
+ A + Q T ++ K + AL V + + + F
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-- 160
Query: 63 LHPNVQAPSSEMHFFDKNYVRGLSWYRNQMPLTLEGQMTMEKTPSYFVTKRVPSRVKKMN 122
Q + + +F++ +R L Y+ L + +T S + R +K+
Sbjct: 161 ---GGQGNTDD--YFEE--LRDL--YQTYHVLVGDLIKFSAETLSELI--RTTLDAEKVF 209
Query: 123 PY-VKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQMTMKKTPSYFVTKRV----PSRVK 177
+ ++ + +P DY S PL Q+ Y VT ++ P
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA-----HYVVTAKLLGFTPG--- 261
Query: 178 KMNPYVK-LIVVVRDPVT-RAISDYTQSSSKKPEY--LRKSFADLFYINGTNVVNTRWGI 233
++ Y+K + VT AI+ ++ S + + +RK+ LF+
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIA---ETDSWESFFVSVRKAITVLFF------------- 305
Query: 234 VRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKVIITEKHFYFNT 293
IG+ + +P + + P+ L+D L
Sbjct: 306 --IGVRC------YEAYPNTS----------LPPSI----LEDSL-------------EN 330
Query: 294 TKGFPCLMKS------ETLEDFLGL--KVIITEKHFY---FNTTK-----GFP------C 331
+G P M S E ++D++ + K N K G P
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 332 LMKSETLASPHCLGKNKGRI-----HPKIDESILDRLTQFYR---PFN 371
L + A G ++ RI K +F PF+
Sbjct: 391 LTLRKAKAPS---GLDQSRIPFSERKLKFS-------NRFLPVASPFH 428
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA
pesticide, structural genomics, structural genomics
consort transferase; HET: A3P PCI; 1.80A {Homo sapiens}
PDB: 2ad1_A*
Length = 298
Score = 35.6 bits (82), Expect = 0.018
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 179 MNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLFYINGTNVVNTRWGIVRIGL 238
+ K+I V R+P +S Y K ++ + F G V G
Sbjct: 122 LEKNCKIIYVARNPKDNMVSYYHFQRMNKALPAPGTWEEYFE-------TFLAGKVCWGS 174
Query: 239 YARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKV 282
+ ++ W + + +++ E + +P E+++L +F+G K+
Sbjct: 175 WHEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKL 218
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu
genomics, protein structure initiative, center for
eukaryot structural genomics; 1.90A {Arabidopsis
thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Length = 326
Score = 34.4 bits (79), Expect = 0.046
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Query: 172 VPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYL-RKSFADLF--YINGTNVVN 228
+P VK + K++ R+P +S + PE + G +
Sbjct: 146 LPESVKSSSC--KIVYCCRNPKDMFVSLWHFGKKLAPEETADYPIEKAVEAFCEGKFIGG 203
Query: 229 TRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLK 281
W + YA + ++ +F++ E L EMKR+ +FL
Sbjct: 204 PFWDHILEYWYASREN-------PNKVLFVTYEELKKQTEVEMKRIAEFLECG 249
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive
cooperativity, two substrate binding sites; HET: A3P
NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A*
3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A*
3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Length = 295
Score = 34.0 bits (78), Expect = 0.062
Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 13/113 (11%)
Query: 172 VPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLF--YINGTNVVNT 229
+P + V + V R+ A+S Y K ++ ++ G
Sbjct: 114 LPQTLLDQKVKV--VYVARNAKDVAVSYYHFYHMAKVHPEPGTWDSFLEKFMVGEVSY-- 169
Query: 230 RWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKV 282
G + +++ W + +++ E + +P E++++ +F+G +
Sbjct: 170 -------GSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGHSL 215
>2ov8_A STAL; sulfotransferase, structural genomics, montr kingston
bacterial structural genomics initiative, BSGI, UN
function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A
2ovf_A*
Length = 288
Score = 33.5 bits (77), Expect = 0.10
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 184 KLIVVVRDPVTRAISDYTQSSSKKPEYL-RKSFADLFYINGTNVVNTRWGIVRIGLYARY 242
K++ ++R+P +S + + A+ F I ++ G +
Sbjct: 102 KVVCLIRNPRDAMLSLMRMKGIPPEDVEACRKIAETF-IAD-EGFSSVRIWAGEGSWPEN 159
Query: 243 LDTWL----KYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLK 281
+ +W + FP + + + E L DP E+ ++ DFL L
Sbjct: 160 IRSWTDSVHESFPNAAVLAVRYEDLRKDPEGELWKVVDFLELG 202
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus} PDB: 2zzi_A
Length = 207
Score = 31.4 bits (72), Expect = 0.33
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 251 PLSQFIFI---SGETLIVDPAAEMKRLQDFL---GLK---VIITEKHF 289
PL + ++ +++DP E ++L GL +++T HF
Sbjct: 10 PLQENAYLVETGEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHF 57
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella
enterica}
Length = 210
Score = 30.3 bits (69), Expect = 0.83
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 11/50 (22%)
Query: 251 PLSQFIFI-----SGETLIVDPAAEMKRLQDFL---GLK---VIITEKHF 289
SQ + + +VDP + ++++ + G+ +++T H
Sbjct: 10 AFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHL 59
>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'-
diphosphate; HET: A3P RTL; 2.00A {Spodoptera frugiperda}
SCOP: c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*
Length = 351
Score = 30.0 bits (67), Expect = 1.4
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 177 KKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFADLF--YINGTNVVNTRWGIV 234
M VK++ + RDP A+S + + + +F D + + G +
Sbjct: 172 PNMLDTVKMVYLARDPRDVAVSSFHHARLLYLLNKQSNFKDFWEMFHRG---------LY 222
Query: 235 RIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQDFLGLKV 282
+ Y ++ +F+ E + D + R+ DFLG K+
Sbjct: 223 TLTPYFEHVKEAWAKRHDPNMLFLFYEDYLKDLPGCIARIADFLGKKL 270
>2cwo_A P21, RNA silencing suppressor; octamer, ring, head-TO-head,
tail-TO-tail, all alpha helical binding protein, RNA
binding protein; 3.30A {Beet yellows virus}
Length = 197
Score = 28.2 bits (62), Expect = 3.9
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 135 VTRAISDYTQSSR-NQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVR 190
++ + ++ + + N + +T+E + M++ P+ RVPSR+ +M ++ + VR
Sbjct: 56 ISECVDEFNELASFNHLLVTVEHREWMEQHPNQSSKLRVPSRIGEMLKEIRAFLKVR 112
Score = 27.8 bits (61), Expect = 5.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 90 NQMPLTLEGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVR 132
N + +T+E + ME+ P+ RVPSR+ +M ++ + VR
Sbjct: 70 NHLLVTVEHREWMEQHPNQSSKLRVPSRIGEMLKEIRAFLKVR 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,903,490
Number of extensions: 352242
Number of successful extensions: 924
Number of sequences better than 10.0: 1
Number of HSP's gapped: 890
Number of HSP's successfully gapped: 46
Length of query: 384
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 289
Effective length of database: 4,049,298
Effective search space: 1170247122
Effective search space used: 1170247122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)