RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14881
(384 letters)
>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 141 bits (357), Expect = 3e-40
Identities = 152/349 (43%), Positives = 196/349 (56%), Gaps = 93/349 (26%)
Query: 37 ASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDKNYVRGLSWYRNQMPLTL 96
S+ LP A+IIGVKK GTRALLEF+++HP+V+A
Sbjct: 13 GSKQLPQAIIIGVKKGGTRALLEFLRVHPDVRAV-------------------------- 46
Query: 97 EGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEG 156
P +F R+ R+ MP TL+G
Sbjct: 47 ------GAEPHFF--------------------------DRSYDKGLAWYRDLMPRTLDG 74
Query: 157 QMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFA 216
Q+TM+KTPSYFVT+ P+R+ M+ KLIVVVRDPVTRAISDYTQ+ SK+P+ +F
Sbjct: 75 QITMEKTPSYFVTREAPARISAMSKDTKLIVVVRDPVTRAISDYTQTLSKRPDI--PTFE 132
Query: 217 DLFYINGTN-VVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMKRLQ 275
L + N T +++T W ++IG+YA++L+ WL++FP+ Q +F+SGE LI DPA E+ R+Q
Sbjct: 133 SLTFKNRTAGLIDTSWSAIQIGIYAKHLEHWLRHFPIRQMLFVSGERLISDPAGELGRVQ 192
Query: 276 DFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTKGFPCLMKS 335
DFLGLK IIT+KHFYFN TKGFPCL K+E
Sbjct: 193 DFLGLKRIITDKHFYFNKTKGFPCLKKAEGSS---------------------------- 224
Query: 336 ETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTGIDFGW 384
PHCLGK KGR HP+ID ++ RL +FYRPFNLKFYQMTG DFGW
Sbjct: 225 ----RPHCLGKTKGRTHPEIDREVVRRLREFYRPFNLKFYQMTGHDFGW 269
>d1nsta_ c.37.1.5 (A:) Heparan sulfate
N-deacetylase/N-sulfotransferase domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 301
Score = 128 bits (321), Expect = 9e-35
Identities = 68/347 (19%), Positives = 121/347 (34%), Gaps = 88/347 (25%)
Query: 38 SRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPS-SEMHFFDKNYVRGLSWYRNQMPLTL 96
P LIIG +K+GT AL F+ +HP++ + S F + + G ++++
Sbjct: 23 CDRFPKLLIIGPQKTGTTALYLFLGMHPDLSSNYPSSETFEEIQFFNGHNYHKG------ 76
Query: 97 EGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEG 156
I Y +P
Sbjct: 77 ------------------------------------------IDWY--MEFFPIPSNTTS 92
Query: 157 QMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKKPEYLRKSFA 216
+K+ +YF ++ P R + P K++ ++ +P RA S Y + K
Sbjct: 93 DFYFEKSANYFDSEVAPRRAAALLPKAKVLTILINPADRAYSWYQHQRAHDDPVALKYTF 152
Query: 217 DLFYINGTN----VVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDPAAEMK 272
G++ + + + G YA +++ WL + +Q + + G+ L +PA M
Sbjct: 153 HEVITAGSDASSKLRALQNRCLVPGWYATHIERWLSAYHANQILVLDGKLLRTEPAKVMD 212
Query: 273 RLQDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTKGFPCL 332
+Q FLG+ I K F+ KGF C
Sbjct: 213 MVQKFLGVT-------------------------------NTIDYHKTLAFDPKKGFWCQ 241
Query: 333 MKSETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTG 379
+ CLGK+KGR +P++D L +YR N++ ++
Sbjct: 242 LLEGGK--TKCLGKSKGRKYPEMDLDSRAFLKDYYRDHNIELSKLLY 286
>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 125 bits (315), Expect = 2e-34
Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 35/237 (14%)
Query: 148 NQMPLTLEGQMTMKKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSSKK 207
QMP + Q+T++KTP+YF + +VP R+ MNP ++L++++RDP R +SDYTQ
Sbjct: 56 TQMPFSSPHQLTVEKTPAYFTSPKVPERIHSMNPTIRLLLILRDPSERVLSDYTQVLYNH 115
Query: 208 PEYLRKSFADLFYINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLSQFIFISGETLIVDP 267
+ + + +N + + LY ++ WL++FPL + G+ LI DP
Sbjct: 116 LQKHKPYPPIEDLLMRDGRLNLDYKALNRSLYHAHMLNWLRFFPLGHIHIVDGDRLIRDP 175
Query: 268 AAEMKRLQDFLGLKVIITEKHFYFNTTKGFPCLMKSETLEDFLGLKVIITEKHFYFNTTK 327
E+++++ FL L I +FYFN TKGF CL S
Sbjct: 176 FPEIQKVERFLKLSPQINASNFYFNKTKGFYCLRDSGK---------------------- 213
Query: 328 GFPCLMKSETLASPHCLGKNKGRIHPKIDESILDRLTQFYRPFNLKFYQMTGIDFGW 384
CL ++KGR HP++D +LD+L +++ N KF+++ G F W
Sbjct: 214 -------------DRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKFFKLVGRTFDW 257
Score = 92.7 bits (229), Expect = 3e-22
Identities = 57/117 (48%), Positives = 84/117 (71%), Gaps = 2/117 (1%)
Query: 37 ASRHLPDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFD--KNYVRGLSWYRNQMPL 94
+++ LP +IIGV+K GTRALLE + LHP+V A +E+HFFD ++Y +GL WY QMP
Sbjct: 1 STQQLPQTIIIGVRKGGTRALLEMLSLHPDVAAAENEVHFFDWEEHYSQGLGWYLTQMPF 60
Query: 95 TLEGQMTMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMP 151
+ Q+T+EKTP+YF + +VP R+ MNP ++L++++RDP R +SDYTQ N +
Sbjct: 61 SSPHQLTVEKTPAYFTSPKVPERIHSMNPTIRLLLILRDPSERVLSDYTQVLYNHLQ 117
>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium
smegmatis [TaxId: 1772]}
Length = 265
Score = 62.1 bits (149), Expect = 2e-11
Identities = 25/243 (10%), Positives = 65/243 (26%), Gaps = 21/243 (8%)
Query: 42 PDALIIGVKKSGTRALLEFIKLHPNVQAPSSEMHFFDK-NYVRGLSWYRNQMPLTLEGQM 100
L++ ++SG+ L+E ++ P + + + + ++
Sbjct: 4 TAYLVLASQRSGSTLLVESLRATGVAGEPQEFFQYLPNTSMSPQPREWFADVEDQSILRL 63
Query: 101 TMEKTPSYFVTKRVPSRVKKMNPYVKLIVVVRDPVTRAISDYTQSSRNQMPLTLEGQMTM 160
+ + T + NQ PL ++ +
Sbjct: 64 LDPLIEGKPDLAPATIWRDYIQTVGR---------TPNGVWGGKLMWNQTPLLVQRAKDL 114
Query: 161 KKTPSYFVTKRVPSRVKKMNPYVKLIVVV-RDPVTRAISDYTQSSSKKPEYLRKSFADLF 219
+ + + LI + D V++A+S + ++ D
Sbjct: 115 PDRSGSG---LLSAIRDVVGSDPVLIHIHRPDVVSQAVSFWRAVQTRVWRGRPDPVRDAR 171
Query: 220 YINGTNVVNTRWGIVRIGLYARYLDTWLKYFPLS--QFIFISGETLIVDPAAEMKRLQDF 277
+ I + + W +F + I + L + + + +
Sbjct: 172 AEY-----HAGAIAHVITMLRAQEEGWRAWFTEENVEPIDVDYPYLWRNLTEVVGTVLEA 226
Query: 278 LGL 280
LG
Sbjct: 227 LGQ 229
>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Klebsiella pneumoniae [TaxId: 573]}
Length = 519
Score = 26.2 bits (57), Expect = 8.5
Identities = 15/121 (12%), Positives = 39/121 (32%), Gaps = 20/121 (16%)
Query: 176 VKKMNPYVKLIVVVRDPVTRAISDYTQSSSK--KPEYLRKSFADLFYINGTNVVNT-RWG 232
P ++I V + I D Q+ K + S + + + + + + G
Sbjct: 137 SALYKP--EIIAVSTTCMAEVIGDDLQAFIANAKKDGFVDSSIAVPHAHTPSFIGSHVTG 194
Query: 233 IVRIGLYARYLDTWLKYFP---------LSQFIFISGETLIVDPAAEMKRLQDFLGLKVI 283
+ + + K F L + ++G + +KR+ + + +
Sbjct: 195 ------WDNMFEGFAKTFTADYQGQPGKLPKLNLVTGFETYLGNFRVLKRMMEQMAVPCS 248
Query: 284 I 284
+
Sbjct: 249 L 249
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,454,884
Number of extensions: 69561
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 12
Length of query: 384
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,213,086
Effective search space: 360286542
Effective search space used: 360286542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)