BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14882
(743 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/212 (53%), Positives = 148/212 (69%), Gaps = 10/212 (4%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
++VCY+TNW+QYR +F P+D++P LCTH+I+AF + +LS+ E NDET L
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDET------L 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ LKK NPKLKTLLAIGGW+FGTQKF +M + +RQTF+ SA+ FLR+ +FDGLD
Sbjct: 56 YQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 149 IDWEYPAGTD----DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYD 204
+DWEYP DK+ + L+++L AF+ EAQ K RLLL+AAVP G + GY+
Sbjct: 116 LDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYE 175
Query: 205 VPAVAGYLDFINLMAYDFHGKWESQVGHNAPL 236
V +A LDF+NLMAYDFHG WE GHN+PL
Sbjct: 176 VDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPL 207
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 111/312 (35%), Positives = 145/312 (46%), Gaps = 88/312 (28%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
L AF+ EAQ K RLLL+AAVP G + GY+V +A LDF+NLMAYDFHG WE
Sbjct: 141 LANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKV 200
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
GHN+PL S L+V+ A W++ G
Sbjct: 201 TGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGT-------------------------- 234
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTIS 426
P KLI+GMPTYGR+FTL + + +V +PA+G G
Sbjct: 235 ------------------PASKLILGMPTYGRSFTLASSSDTRVGAPATGSGT------- 269
Query: 427 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGY 486
PG +T E G ++YYEVC GA
Sbjct: 270 ----------------------------------PGPFTKEGGMLAYYEVCSW--KGATK 293
Query: 487 VWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDV 546
+ KVPY+ +QWVGFDD +S + K+++LK G GGAMVW +D+DDF G C
Sbjct: 294 QRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSC-NQG 352
Query: 547 KYPLIGAMREEL 558
+YPLI +R+EL
Sbjct: 353 RYPLIQTLRQEL 364
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 150/219 (68%), Gaps = 10/219 (4%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
++VCY+TNW+QYR +F P+D++P LCTH+I+AF + +LS+ E NDET L
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDET------L 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ LKK NPKLKTLLAIGGW+FGTQKF +M + +RQTF+ SA+ FLR+ +FDGLD
Sbjct: 56 YQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 149 IDWEYPAGTD----DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYD 204
+DWEYP DK+ + L+++L AF+ EAQ K RLLL+AAVP G + GY+
Sbjct: 116 LDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYE 175
Query: 205 VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDS 243
V +A LDF+NLMAYDFHG WE GHN+PL +S
Sbjct: 176 VDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEES 214
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 147/313 (46%), Gaps = 88/313 (28%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
L AF+ EAQ K RLLL+AAVP G + GY+V +A LDF+NLMAYDFHG WE
Sbjct: 141 LANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKV 200
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
GHN+PL +S L+V+ A W+
Sbjct: 201 TGHNSPLYKRQEESGAAASLNVDAAVQQWL------------------------------ 230
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTIS 426
EK P KLI+GMPTYGR+FTL + + +V +PA+G G
Sbjct: 231 --------------EKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGT------- 269
Query: 427 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGY 486
PG +T E G ++YYEVC GA
Sbjct: 270 ----------------------------------PGPFTKEGGMLAYYEVCSW--KGATK 293
Query: 487 VWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDV 546
+ KVPY+ +QWVGFDD +S + K+++LK G GGAMVW +D+DDF G C
Sbjct: 294 QRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSC-NQG 352
Query: 547 KYPLIGAMREELN 559
+YPLI +R+EL+
Sbjct: 353 RYPLIQTLRQELS 365
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/212 (53%), Positives = 148/212 (69%), Gaps = 10/212 (4%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
++VCY+TNW+QYR +F P+D++P LCTH+I+AF + +LS+ E NDET L
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDET------L 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ LKK NPKLKTLLAIGGW+FGTQKF +M + +RQTF+ SA+ FLR+ +FDGLD
Sbjct: 56 YQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 149 IDWEYPAGTD----DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYD 204
+DWEYP DK+ + L+++L AF+ EAQ K RLLL+AAVP G + GY+
Sbjct: 116 LDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYE 175
Query: 205 VPAVAGYLDFINLMAYDFHGKWESQVGHNAPL 236
V +A LDF+NLMAYDFHG WE GHN+PL
Sbjct: 176 VDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPL 207
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 146/313 (46%), Gaps = 88/313 (28%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
L AF+ EAQ K RLLL+AAVP G + GY+V +A LDF+NLMAYDFHG WE
Sbjct: 141 LANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKV 200
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
GHN+PL S L+V+ A W++ G
Sbjct: 201 TGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGT-------------------------- 234
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTIS 426
P KLI+GMPTYGR+FTL + + +V +PA+G G
Sbjct: 235 ------------------PASKLILGMPTYGRSFTLASSSDTRVGAPATGSGT------- 269
Query: 427 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGY 486
PG +T E G ++YYEVC GA
Sbjct: 270 ----------------------------------PGPFTKEGGMLAYYEVCSW--KGATK 293
Query: 487 VWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDV 546
+ KVPY+ +QWVGFDD +S + K+++LK G GGAMVW +D+DDF G C
Sbjct: 294 QRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSC-NQG 352
Query: 547 KYPLIGAMREELN 559
+YPLI +R+EL+
Sbjct: 353 RYPLIQTLRQELS 365
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 239 bits (611), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 150/219 (68%), Gaps = 10/219 (4%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
++VCY+TNW+QYR +F P+D++P LCTH+I+AF + +LS+ E NDET L
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDET------L 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ LKK NPKLKTLLAIGGW+FGTQKF +M + +RQTF+ SA+ FLR+ +FDGLD
Sbjct: 56 YQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 149 IDWEYPAGTD----DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYD 204
+DWEYP DK+ + L+++L AF+ EAQ K RLLL+AAVP G + GY+
Sbjct: 116 LDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYE 175
Query: 205 VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDS 243
V +A LDF+NLMAYDFHG WE GHN+PL +S
Sbjct: 176 VDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEES 214
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 147/313 (46%), Gaps = 88/313 (28%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
L AF+ EAQ K RLLL+AAVP G + GY+V +A LDF+NLMAYDFHG WE
Sbjct: 141 LANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKV 200
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
GHN+PL +S L+V+ A W++ G
Sbjct: 201 TGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGT-------------------------- 234
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTIS 426
P KLI+GMPTYGR+FTL + + +V +PA+G G
Sbjct: 235 ------------------PASKLILGMPTYGRSFTLASSSDTRVGAPATGSGT------- 269
Query: 427 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGY 486
PG +T E G ++YYEVC GA
Sbjct: 270 ----------------------------------PGPFTKEGGMLAYYEVCSW--KGATK 293
Query: 487 VWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDV 546
+ KVPY+ +QWVGFDD +S + K+++LK G GGAMVW +D+DDF G C
Sbjct: 294 QRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSC-NQG 352
Query: 547 KYPLIGAMREELN 559
+YPLI +R+EL+
Sbjct: 353 RYPLIQTLRQELS 365
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 238 bits (607), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 113/212 (53%), Positives = 148/212 (69%), Gaps = 10/212 (4%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
++VCY+TNW+QYR +F P+D++P LCTH+I+AF + +LS+ E NDET L
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDET------L 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ LKK NPKLKTLLAIGGW+FGTQKF +M + +RQTF+ SA+ FLR+ +FDGLD
Sbjct: 56 YQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 149 IDWEYPAGTD----DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYD 204
+DWEYP DK+ + L+++L AF+ EAQ K RLLL+AAVP G + GY+
Sbjct: 116 LDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYE 175
Query: 205 VPAVAGYLDFINLMAYDFHGKWESQVGHNAPL 236
V +A LDF+NLMAYDFHG WE GHN+PL
Sbjct: 176 VDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPL 207
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 147/313 (46%), Gaps = 88/313 (28%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
L AF+ EAQ K RLLL+AAVP G + GY+V +A LDF+NLMAYDFHG WE
Sbjct: 141 LANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKV 200
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
GHN+PL +S L+V+ A W++ G
Sbjct: 201 TGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGT-------------------------- 234
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTIS 426
P KLI+GMPTYGR+FTL + + +V +PA+G G
Sbjct: 235 ------------------PASKLILGMPTYGRSFTLASSSDTRVGAPATGSGT------- 269
Query: 427 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGY 486
PG +T E G ++YYEVC GA
Sbjct: 270 ----------------------------------PGPFTKEGGMLAYYEVCSW--KGATK 293
Query: 487 VWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDV 546
+ KVPY+ +QWVGFDD +S + K+++LK G GGAMVW +D+DDF G C
Sbjct: 294 QRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSC-NQG 352
Query: 547 KYPLIGAMREELN 559
+YPLI +R+EL+
Sbjct: 353 RYPLIQTLRQELS 365
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 233 bits (593), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 148/219 (67%), Gaps = 10/219 (4%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
++ CY+TNW+QYR +G+F P+DI P LCTH+I+AF ++ ++++ E ND V L
Sbjct: 2 QLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWND------VTL 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ LK N +LKTLLAIGGW+FGT F M + +RQTFI S + FLRQ FDGLD
Sbjct: 56 YQAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLD 115
Query: 149 IDWEYPAGT----DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYD 204
DWEYP DK + +L++E+REAFE EA+++ KPRL++TAAV G NI+ GY+
Sbjct: 116 FDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYE 175
Query: 205 VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDS 243
+P ++ YLD+I++M YD HG WE G N+PL +D+
Sbjct: 176 IPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDT 214
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 152/313 (48%), Gaps = 86/313 (27%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
++REAFE EA+++ KPRL++TAAV G NI+ GY++P ++ YLD+I++M YD HG WE
Sbjct: 140 EMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEG 199
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
G N+PL +D+ L+V+ N W D GAPA
Sbjct: 200 YTGENSPLYKYPTDTGSNAYLNVDYVMNYWK-------------------DNGAPA---- 236
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
EKLI+G PTYG F L+NP+ + +P SG G A
Sbjct: 237 ---------------------EKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPA----- 270
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
G Y E+G +YYE+C L+NGA
Sbjct: 271 ------------------------------------GPYAKESGIWAYYEICTFLKNGAT 294
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
WD +VPY G+ WVG+D+ KS K WLK N +GGAMVW +D+DDFTGT C
Sbjct: 295 QGWDAPQEVPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFC-NQ 353
Query: 546 VKYPLIGAMREEL 558
K+PLI +++ L
Sbjct: 354 GKFPLISTLKKAL 366
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 233 bits (593), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 148/219 (67%), Gaps = 10/219 (4%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
++ CY+TNW+QYR +G+F P+DI P LCTH+I+AF ++ ++++ E ND V L
Sbjct: 6 QLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWND------VTL 59
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ LK N +LKTLLAIGGW+FGT F M + +RQTFI S + FLRQ FDGLD
Sbjct: 60 YQAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLD 119
Query: 149 IDWEYPAGT----DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYD 204
DWEYP DK + +L++E+REAFE EA+++ KPRL++TAAV G NI+ GY+
Sbjct: 120 FDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYE 179
Query: 205 VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDS 243
+P ++ YLD+I++M YD HG WE G N+PL +D+
Sbjct: 180 IPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDT 218
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 152/313 (48%), Gaps = 86/313 (27%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
++REAFE EA+++ KPRL++TAAV G NI+ GY++P ++ YLD+I++M YD HG WE
Sbjct: 144 EMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEG 203
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
G N+PL +D+ L+V+ N W D GAPA
Sbjct: 204 YTGENSPLYKYPTDTGSNAYLNVDYVMNYWK-------------------DNGAPA---- 240
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
EKLI+G PTYG F L+NP+ + +P SG G A
Sbjct: 241 ---------------------EKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPA----- 274
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
G Y E+G +YYE+C L+NGA
Sbjct: 275 ------------------------------------GPYAKESGIWAYYEICTFLKNGAT 298
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
WD +VPY G+ WVG+D+ KS K WLK N +GGAMVW +D+DDFTGT C
Sbjct: 299 QGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFC-NQ 357
Query: 546 VKYPLIGAMREEL 558
K+PLI +++ L
Sbjct: 358 GKFPLISTLKKAL 370
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 143/222 (64%), Gaps = 8/222 (3%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V L
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VTL 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ + LK NPKLKTLL++GGW+FG ++F +++ SR+TFI S PFLR FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 149 IDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAV 208
+ W YP G DK++ L+KE++ F EAQ RLLL+AAV G I GYD+ +
Sbjct: 116 LAWLYP-GRRDKRHLTALVKEMKAEFAREAQ-AGTERLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 209 AGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREA 250
+ +LDFI+L+ YDFHG W VGH++PL +SD+ + A
Sbjct: 174 SRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNA 215
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 147/313 (46%), Gaps = 89/313 (28%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+++ F EAQ RLLL+AAV G I GYD+ ++ +LDFI+L+ YDFHG W
Sbjct: 135 EMKAEFAREAQ-AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQ 193
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
VGH++PL +SD+ R + + A + +RLGAP
Sbjct: 194 TVGHHSPLFRGNSDASSRFS-NADYAVSYMLRLGAPAN---------------------- 230
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
KL++G+PT+GR+FTL + V +P SG G G
Sbjct: 231 ----------------------KLVMGIPTFGRSFTLASSKT-DVGAPISGPGIPG---- 263
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
++T E G ++YYE+C+ L
Sbjct: 264 -------------------------------------RFTKEKGILAYYEICDFLHGATT 286
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
+ + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+DDF GT CG +
Sbjct: 287 HRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQN 345
Query: 546 VKYPLIGAMREEL 558
+ +PL A+++ L
Sbjct: 346 LTFPLTSAVKDVL 358
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 143/222 (64%), Gaps = 8/222 (3%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V L
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VTL 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ + LK NPKLKTLL++GGW+FG ++F +++ SR+TFI S PFLR FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 149 IDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAV 208
+ W YP G DK++ L+KE++ F EAQ RLLL+AAV G I GYD+ +
Sbjct: 116 LAWLYP-GRRDKRHLTALVKEMKAEFAREAQ-AGTERLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 209 AGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREA 250
+ +LDFI+L+ YDFHG W VGH++PL +SD+ + A
Sbjct: 174 SRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNA 215
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 150/313 (47%), Gaps = 89/313 (28%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+++ F EAQ RLLL+AAV G I GYD+ ++ +LDFI+L+ YDFHG W
Sbjct: 135 EMKAEFAREAQ-AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQ 193
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
VGH++PL +SD+ R + + A + +RLGAP
Sbjct: 194 TVGHHSPLFRGNSDASSRFS-NADYAVSYMLRLGAPAN---------------------- 230
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
KL++G+PT+GR+FTL +S GG
Sbjct: 231 ----------------------KLVMGIPTFGRSFTL-------ASSKTDGG-------- 253
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
AP SG G PG++T E G ++YYE+C+ L
Sbjct: 254 ---------------------------APISGPGIPGRFTKEKGILAYYEICDFLHGATT 286
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
+ + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+DDF GT CG +
Sbjct: 287 HRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQN 345
Query: 546 VKYPLIGAMREEL 558
+ +PL A+++ L
Sbjct: 346 LTFPLTSAVKDVL 358
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 141/222 (63%), Gaps = 8/222 (3%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V L
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VTL 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ + LK NPKLKTLL++GGW+FG ++F ++ SR+TFI S PFLR FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 149 IDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAV 208
+ W YP G DK++ L+KE++ F EAQ RLLL+AAV G I GYD+ +
Sbjct: 116 LAWLYP-GRRDKRHLTALVKEMKAEFAREAQ-AGTERLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 209 AGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREA 250
+ +LDFI+L+ YDFHG W VGH++PL +SD + A
Sbjct: 174 SRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDGSSRFSNA 215
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 149/313 (47%), Gaps = 89/313 (28%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+++ F EAQ RLLL+AAV G I GYD+ ++ +LDFI+L+ YDFHG W
Sbjct: 135 EMKAEFAREAQ-AGTERLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQ 193
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
VGH++PL +SD R + + A + +RLGAP
Sbjct: 194 TVGHHSPLFRGNSDGSSRFS-NADYAVSYMLRLGAPAN---------------------- 230
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
KL++G+PT+GR+FTL +S GG
Sbjct: 231 ----------------------KLVMGIPTFGRSFTL-------ASSKTDGG-------- 253
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
AP SG G PG++T E G ++YYE+C+ L
Sbjct: 254 ---------------------------APISGPGIPGRFTKEKGILAYYEICDFLHGATT 286
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
+ + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+DDF GT CG +
Sbjct: 287 HRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQN 345
Query: 546 VKYPLIGAMREEL 558
+ +PL A+++ L
Sbjct: 346 LTFPLTSAVKDVL 358
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 143/222 (64%), Gaps = 8/222 (3%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V L
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VTL 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ + LK NP LKTLL++GGW+FG+++F +++ SR+TFI S PFLR FDGLD
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 149 IDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAV 208
+ W YP G DK++ L+KE++ F EAQ +LLL+AAVP G I GYD+ +
Sbjct: 116 LAWLYP-GWRDKRHLTTLVKEMKAEFVREAQ-AGTEQLLLSAAVPAGKIAIDRGYDIAQI 173
Query: 209 AGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREA 250
+ +LDFI+L+ YDFHG W VGH++PL +SD + A
Sbjct: 174 SRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNA 215
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/313 (30%), Positives = 149/313 (47%), Gaps = 89/313 (28%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+++ F EAQ +LLL+AAVP G I GYD+ ++ +LDFI+L+ YDFHG W
Sbjct: 135 EMKAEFVREAQ-AGTEQLLLSAAVPAGKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRG 193
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
VGH++PL +SD R + + A + +RLGAP
Sbjct: 194 TVGHHSPLFRGNSDGSSRFS-NADYAVSYMLRLGAPAN---------------------- 230
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
KL++G+PT+GR++TL + V +P SG G G++T
Sbjct: 231 ----------------------KLVMGIPTFGRSYTLASSKT-DVGAPISGPGIPGQFT- 266
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
KEK G ++YYE+C+ L
Sbjct: 267 -KEK---------------------------------------GTLAYYEICDFLHGATT 286
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
+ + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+DDF GT CG +
Sbjct: 287 HRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQN 345
Query: 546 VKYPLIGAMREEL 558
+ +PL A+++ L
Sbjct: 346 LTFPLTSAIKDVL 358
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 142/222 (63%), Gaps = 8/222 (3%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V L
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VTL 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ + LK NPKLKTLL++GGW+FG ++F ++ SR+TFI S PFLR FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 149 IDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAV 208
+ W YP G DK++ L+KE++ F EAQ +LLL+AAV G I GYD+ +
Sbjct: 116 LAWLYP-GRRDKRHLTTLVKEMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 209 AGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREA 250
+ +LDFI+L+ YDFHG W VGH++PL + + D+ + A
Sbjct: 174 SRHLDFISLLTYDFHGAWRQTVGHHSPLFAGNEDASSRFSNA 215
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 147/313 (46%), Gaps = 89/313 (28%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+++ F EAQ +LLL+AAV G I GYD+ ++ +LDFI+L+ YDFHG W
Sbjct: 135 EMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQ 193
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
VGH++PL + + D+ R + + A + +RLGAP
Sbjct: 194 TVGHHSPLFAGNEDASSRFS-NADYAVSYMLRLGAPAN---------------------- 230
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
KL++G+PT+GR+FTL + V +P SG G G
Sbjct: 231 ----------------------KLVMGIPTFGRSFTLASSKT-DVGAPVSGPGVPG---- 263
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
++T E G ++YYE+C+ L
Sbjct: 264 -------------------------------------RFTKEKGILAYYEICDFLHGATT 286
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
+ + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+DDF GT CG +
Sbjct: 287 HRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQN 345
Query: 546 VKYPLIGAMREEL 558
+ +PL A+++ L
Sbjct: 346 LTFPLTSAVKDVL 358
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 199 bits (507), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 141/222 (63%), Gaps = 8/222 (3%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
+++CYYT+WSQYR G P+ I+P LCTH+I+ F + ++ ++E ND V L
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEIDTWEWND------VTL 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ + LK NPKLKTLL++GGW+FG ++F +++ SR+TFI S PFLR FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 149 IDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAV 208
+ W YP G DK++ L+KE++ F EAQ +LLL+AAV G I GYD+ +
Sbjct: 116 LAWLYP-GRRDKRHLTTLVKEMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 209 AGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREA 250
+ +LDFI+L+ YDFHG W VGH++PL + D+ + A
Sbjct: 174 SRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNA 215
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 146/313 (46%), Gaps = 89/313 (28%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+++ F EAQ +LLL+AAV G I GYD+ ++ +LDFI+L+ YDFHG W
Sbjct: 135 EMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQ 193
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
VGH++PL + D+ R + + A + +RLGAP
Sbjct: 194 TVGHHSPLFRGNEDASSRFS-NADYAVSYMLRLGAPAN---------------------- 230
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
KL++G+PT+GR+FTL + V +P SG G G
Sbjct: 231 ----------------------KLVMGIPTFGRSFTLASSKT-DVGAPVSGPGIPG---- 263
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
++T E G ++YYE+C+ L
Sbjct: 264 -------------------------------------RFTKEKGILAYYEICDFLHGATT 286
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
+ + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+DDF GT CG +
Sbjct: 287 HRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQN 345
Query: 546 VKYPLIGAMREEL 558
+ +PL A+++ L
Sbjct: 346 LTFPLTSAVKDVL 358
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 199 bits (507), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 142/222 (63%), Gaps = 8/222 (3%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V L
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VTL 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ + LK NP LKTLL++GGW+FG+++F +++ SR+TFI S PFLR FDGLD
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 149 IDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAV 208
+ W YP G DK++ L+KE++ F EAQ +LLL+AAV G I GYD+ +
Sbjct: 116 LAWLYP-GWRDKRHLTTLVKEMKAEFVREAQ-AGTEQLLLSAAVTAGKIAIDRGYDIAQI 173
Query: 209 AGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREA 250
+ +LDFI+L+ YDFHG W VGH++PL +SD + A
Sbjct: 174 SRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNA 215
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 150/313 (47%), Gaps = 89/313 (28%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+++ F EAQ +LLL+AAV G I GYD+ ++ +LDFI+L+ YDFHG W
Sbjct: 135 EMKAEFVREAQ-AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRG 193
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
VGH++PL +SD R + + A + +RLGAP
Sbjct: 194 TVGHHSPLFRGNSDGSSRFS-NADYAVSYMLRLGAPAN---------------------- 230
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
KL++G+PT+GR++TL + + +V +P SG G G++T
Sbjct: 231 ----------------------KLVMGIPTFGRSYTLASSST-RVGAPISGPGIPGQFT- 266
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
KEK G ++YYE+C+ L
Sbjct: 267 -KEK---------------------------------------GILAYYEICDFLHGATT 286
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
+ + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+DDF GT CG +
Sbjct: 287 HRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQN 345
Query: 546 VKYPLIGAMREEL 558
+ +PL A+++ L
Sbjct: 346 LTFPLTSAIKDVL 358
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 199 bits (506), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 140/222 (63%), Gaps = 8/222 (3%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V L
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VTL 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ + LK NP LKTLL++GGW+FG Q+F +++ SR+TFI S PFLR FDGLD
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 149 IDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAV 208
+ W YP G DK++ L+KE++ F EAQ +LLL+AAV G I GYD+ +
Sbjct: 116 LAWLYP-GRRDKRHLTTLVKEMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 209 AGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREA 250
+ +LDFI+L+ YDFHG W VGH++PL D+ + A
Sbjct: 174 SRHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSRFSNA 215
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 148/313 (47%), Gaps = 89/313 (28%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+++ F EAQ +LLL+AAV G I GYD+ ++ +LDFI+L+ YDFHG W
Sbjct: 135 EMKAEFIREAQ-AGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQ 193
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
VGH++PL D+ R + + A + +RLGAP
Sbjct: 194 TVGHHSPLFRGQEDASSRFS-NADYAVSYMLRLGAPAN---------------------- 230
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
KL++G+PT+G++FTL + V +P SG G G++T
Sbjct: 231 ----------------------KLVMGIPTFGKSFTLASSKT-DVGAPVSGPGIPGQFT- 266
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
KEK G ++YYE+C+ L+
Sbjct: 267 -KEK---------------------------------------GILAYYEICDFLQGATT 286
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
+ + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+DDF GT CG +
Sbjct: 287 HRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQN 345
Query: 546 VKYPLIGAMREEL 558
+ +PL A+++ L
Sbjct: 346 LTFPLTSAVKDVL 358
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 142/222 (63%), Gaps = 8/222 (3%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
+++CYYT+WSQYR G P+ I+P LCTH+I++F + ++ ++E ND V L
Sbjct: 2 KLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWND------VTL 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y+ + LK NP LKTLL++GGW++G+Q+F +++ SR+TFI S PFLR FDGLD
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 149 IDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAV 208
+ W +P G DK++ L+KE++ F EAQ +LLL+AAV G I GYD+ +
Sbjct: 116 LAWLWP-GWRDKRHLTTLVKEMKAEFVREAQ-AGTEQLLLSAAVTAGKIAIDRGYDIAQI 173
Query: 209 AGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREA 250
+ +LDFI+L+ YDFHG W VGH++PL + D+ + A
Sbjct: 174 SRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNA 215
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 147/313 (46%), Gaps = 89/313 (28%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+++ F EAQ +LLL+AAV G I GYD+ ++ +LDFI+L+ YDFHG W
Sbjct: 135 EMKAEFVREAQ-AGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQ 193
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
VGH++PL + D+ R + + A + +RLGAP
Sbjct: 194 TVGHHSPLFRGNEDASSRFS-NADYAVSYMLRLGAPAN---------------------- 230
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
KL++G+PT+GR+ YT+
Sbjct: 231 ----------------------KLVMGIPTFGRS-----------------------YTL 245
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
+ K +G P I P G PG++T G ++YYE+C+ L
Sbjct: 246 ASSKTDVGAP---------------ISGP----GIPGRFTKWKGILAYYEICDFLHGATT 286
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
+ + D+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+DDF GT CG +
Sbjct: 287 HRFRDQ-QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQN 345
Query: 546 VKYPLIGAMREEL 558
+ +PL A+++ L
Sbjct: 346 LTFPLTSAIKDVL 358
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 138/216 (63%), Gaps = 8/216 (3%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
++VCYYT+WSQYR G P+ ++ LCTHII++F + + ++E ND T L
Sbjct: 2 KLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISNDHIDTWEWNDVT------L 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
Y + LK NP LKTLL++GGW+FG+Q+F +++ + SR+TFI S PFLR FDGLD
Sbjct: 56 YGMLNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 149 IDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAV 208
+ W YP G DK+++ L+KE++ F EAQ KK +LLL+AA+ G I YD+ +
Sbjct: 116 LAWLYP-GRRDKQHFTTLIKEMKAEFIKEAQPGKK-QLLLSAALSAGKVTIDSSYDIAKI 173
Query: 209 AGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSE 244
+ +LDFI++M YDFHG W GH++PL D+
Sbjct: 174 SQHLDFISIMTYDFHGAWRGTTGHHSPLFRGQEDAS 209
Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 148/313 (47%), Gaps = 88/313 (28%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+++ F EAQ KK +LLL+AA+ G I YD+ ++ +LDFI++M YDFHG W
Sbjct: 135 EMKAEFIKEAQPGKK-QLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDFHGAWRG 193
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
GH++PL D+ + + + A +RLGAP
Sbjct: 194 TTGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPAS---------------------- 231
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
KL++G+PT+GR+FTL + V +P SG G
Sbjct: 232 ----------------------KLVMGIPTFGRSFTLASSET-GVGAPISGPGI------ 262
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
PG++T EAG ++YYE+C+ LR GA
Sbjct: 263 -----------------------------------PGRFTKEAGTLAYYEICDFLR-GAT 286
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
+VPY G+QWVG+DD++S++ K+ +LKD GAMVW +D+DDF G+ CG D
Sbjct: 287 VHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQGSFCGQD 346
Query: 546 VKYPLIGAMREEL 558
+++PL A+++ L
Sbjct: 347 LRFPLTNAIKDAL 359
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 139/224 (62%), Gaps = 21/224 (9%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKD-GKVG 87
++VCY+TNWSQ R + GKF PE+I+P LC+H+I++F ++ K+ KD +V
Sbjct: 3 KLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVI-------IKDKSEVM 55
Query: 88 LYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGL 147
LY+ I LK NPKLK LL+IGG+ FG++ F M S SR FI S + FLR NFDGL
Sbjct: 56 LYQTINSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGL 115
Query: 148 DIDWEYPAGTDDKKN--YVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDV 205
D+ W YP D K+N + +L+ EL EAF+ + + K RLLLTA V G I Y V
Sbjct: 116 DVSWIYP---DQKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQV 172
Query: 206 PAVAGYLDFINLMAYDFHGKWESQV--GHNAPL------RSPSS 241
+A LDFINL+++DFHG WE + GHN+PL R PSS
Sbjct: 173 EKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSS 216
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 146/318 (45%), Gaps = 90/318 (28%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+L EAF+ + + K RLLLTA V G I Y V +A LDFINL+++DFHG WE
Sbjct: 136 ELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEK 195
Query: 306 QV--GHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASG 363
+ GHN+PL D +VE A W+ G
Sbjct: 196 PLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKG------------------------ 231
Query: 364 GGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEY 423
+P EK+++G+PTYG +FTL + A V +PASG G AG
Sbjct: 232 --------------------MPSEKVVMGIPTYGHSFTLAS-AETTVGAPASGPGAAGPI 270
Query: 424 TISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNG 483
T S +GF++YYE+C+ L+ G
Sbjct: 271 TES-----------------------------------------SGFLAYYEICQFLK-G 288
Query: 484 AGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCG 543
A + +VPY V G+QWVG+DD KS+ K+ +LK+ GGAM+W++DMDDFTG C
Sbjct: 289 AKITRLQDQQVPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDDFTGKSCN 348
Query: 544 GDVKYPLIGAMREELNGI 561
YPL+ A++ L +
Sbjct: 349 QG-PYPLVQAVKRSLGSL 365
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 134/216 (62%), Gaps = 11/216 (5%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
+++CYYT+W++ R G F+P +I+P LCTH+I+AF ++ +++ + + +D
Sbjct: 2 QLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEIT-YTHEQDLRD----- 55
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
YE + LK N +LKTLLAIGGW FG F M + +RQ FI S + FLRQ NFDGL+
Sbjct: 56 YEALNGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLN 115
Query: 149 IDWEYPAGT----DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYD 204
+DW+YP DK + +L+KE+R+AFE E+ E PRLLLT+ D IK GY
Sbjct: 116 LDWQYPGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYK 175
Query: 205 VPAVAGYLDFINLMAYDFHGKWESQVGHNAPL-RSP 239
+P ++ LD+I +M YD H + G N+PL +SP
Sbjct: 176 IPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSP 211
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 140/314 (44%), Gaps = 86/314 (27%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
++R+AFE E+ E PRLLLT+ D IK GY +P ++ LD+I +M YD H +
Sbjct: 140 EMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDPKDG 199
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
G N+PL D L+V++ + W GA E
Sbjct: 200 YTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASE---------------------- 237
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
KLI+G P YG TF L++P+
Sbjct: 238 ----------------------KLIVGFPAYGHTFILSDPS------------------- 256
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
K IG PT G PGKYT E+G ++YYEVC L GA
Sbjct: 257 ---KTGIGAPTIST-------------------GPPGKYTDESGLLAYYEVCTFLNEGAT 294
Query: 486 YVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD 545
VWD +VPY G++WVG+D+ +S + K WLKDN GGA+VW +DMDDF+G+ C
Sbjct: 295 EVWDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFC-HQ 353
Query: 546 VKYPLIGAMREELN 559
+PL ++ +LN
Sbjct: 354 RHFPLTSTLKGDLN 367
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 111/216 (51%), Gaps = 19/216 (8%)
Query: 31 VCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG-------------WLKKGKLSSFES 77
V Y+ NW+ Y P+D++ D THI++AF W K +
Sbjct: 6 VVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDK 62
Query: 78 NDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVP 137
DE + G +++ LKK N LKTLL+IGGW++ + FK + + R+ F +++
Sbjct: 63 WDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTY-SPNFKTPASTEEGRKKFADTSLK 121
Query: 138 FLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEA-EAQEVKKPRLLLTAAVPVGP 196
++ FDG+DIDWEYP ++VLLLK REA +A A+ + LLT A P GP
Sbjct: 122 LMKDLGFDGIDIDWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGP 181
Query: 197 DNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGH 232
N + + YLDF NLMAYDF G W+ GH
Sbjct: 182 QNYN-KLKLAEMDKYLDFWNLMAYDFSGSWDKVSGH 216
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 65/175 (37%), Gaps = 47/175 (26%)
Query: 248 REAFEA-EAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
REA +A A+ + LLT A P GP N + + YLDF NLMAYDF G W+
Sbjct: 155 REALDAYSAKHPNGKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKV 213
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
GH + + P++ E
Sbjct: 214 SGHMSNV---------------------------------------------FPSTTKPE 228
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAG 421
++++ Y + +P K+++GMP YGR F T+ N G + G
Sbjct: 229 STPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENG 283
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 13/125 (10%)
Query: 425 ISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA 484
+ K+++GMP YGR+F D G E G + + +V E+ A
Sbjct: 246 VPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGAQVTELEDIAA 305
Query: 485 GYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD-----DFTG 539
Y +D + YL+ +D K K ++ NG GG M W D G
Sbjct: 306 SYSYDKNKR--YLIS------YDTVKIAGKKAEYITKNGMGGGMWWESSSDKTGNESLVG 357
Query: 540 TVCGG 544
TV G
Sbjct: 358 TVVNG 362
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 134/279 (48%), Gaps = 30/279 (10%)
Query: 8 CEPARRRLRRPSIKSKPERLLEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWL 67
P L + ++ + V Y+TNW Y FQP D++ H++++F L
Sbjct: 2 ATPRMEDLASTDLSTRATGSINAV-YFTNWGIYGRN---FQPADLQASKILHVLYSFMNL 57
Query: 68 K----------KGKLSSFESNDETKDGKVGLYERIEQL---KKANPKLKTLLAIGGWSFG 114
+ L S+D D Y ++QL KKAN LK +L+IGGW++
Sbjct: 58 RVDGTVYSGDTYADLEKHYSDDSWNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGWTWS 117
Query: 115 TQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAF 174
T F + + +R TF +AV F++ FDG+D+DWEYPA D N VLLL+ +R+
Sbjct: 118 TN-FPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEYPASETDANNMVLLLQRVRQEL 176
Query: 175 EA-EAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVA---GYLDFINLMAYDFHGKWESQV 230
++ A L+ A P GP + Y+V +A LD INLMAYD+ G W+S
Sbjct: 177 DSYSATYANGYHFQLSIAAPAGPSH----YNVLKLAQLGSVLDNINLMAYDYAGSWDSVS 232
Query: 231 GHNA---PLRSPSSDSEWQLREAFEAE-AQEVKKPRLLL 265
GH P S S + + + A +A A V +++L
Sbjct: 233 GHQTNLYPSTSNPSSTPFSTKAAVDAYIAAGVPASKIIL 271
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 55/143 (38%), Gaps = 52/143 (36%)
Query: 265 LTAAVPVGPDNIKGGYDVPAVA---GYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSE 321
L+ A P GP + Y+V +A LD INLMAYD+ G W+S GH L PS+ +
Sbjct: 191 LSIAAPAGPSH----YNVLKLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLY-PSTSNP 245
Query: 322 WRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYE 381
S + A + ++ G
Sbjct: 246 SSTPFSTKAAVDAYIAAG------------------------------------------ 263
Query: 382 KYLPKEKLIIGMPTYGRTFTLTN 404
+P K+I+GMP YGR F T+
Sbjct: 264 --VPASKIILGMPIYGRAFVGTD 284
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 425 ISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMS-YYEVCEMLRNG 483
+ K+++GMP YGR+F D G G+P E + S ++ + + G
Sbjct: 264 VPASKIILGMPIYGRAFVGTD-----------GPGKPYSTIGEGSWESGIWDYKVLPKAG 312
Query: 484 AGYVWDDEMKVPYLVHGDQ--WVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 535
A + D Y + +D +R K+++ K G GG+M W D
Sbjct: 313 ATVITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 19/216 (8%)
Query: 31 VCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG-------------WLKKGKLSSFES 77
V Y+ NW+ Y P+D++ D THI++AF W K +
Sbjct: 6 VVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDK 62
Query: 78 NDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVP 137
DE + G +++ LKK N LKTLL+IGGW++ + FK + + R+ F +++
Sbjct: 63 WDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTY-SPNFKTPASTEEGRKKFADTSLK 121
Query: 138 FLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEA-EAQEVKKPRLLLTAAVPVGP 196
++ FDG+DIDW+YP ++VLLLK REA +A A+ + LLT A P GP
Sbjct: 122 LMKDLGFDGIDIDWQYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGP 181
Query: 197 DNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGH 232
N + + YLDF NLMAYDF G W+ GH
Sbjct: 182 QNYN-KLKLAEMDKYLDFWNLMAYDFSGSWDKVSGH 216
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 65/175 (37%), Gaps = 47/175 (26%)
Query: 248 REAFEA-EAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
REA +A A+ + LLT A P GP N + + YLDF NLMAYDF G W+
Sbjct: 155 REALDAYSAKHPNGKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKV 213
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
GH + + P++ E
Sbjct: 214 SGHMSNV---------------------------------------------FPSTTKPE 228
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAG 421
++++ Y + +P K+++GMP YGR F T+ N G + G
Sbjct: 229 STPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENG 283
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 13/125 (10%)
Query: 425 ISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA 484
+ K+++GMP YGR+F D G E G + + +V E+ A
Sbjct: 246 VPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGAQVTELEDIAA 305
Query: 485 GYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD-----DFTG 539
Y +D + YL+ +D K K ++ NG GG M W D G
Sbjct: 306 SYSYDKNKR--YLIS------YDTVKIAGKKAEYITKNGMGGGMWWESSSDKTGNESLVG 357
Query: 540 TVCGG 544
TV G
Sbjct: 358 TVVNG 362
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 19/216 (8%)
Query: 31 VCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG-------------WLKKGKLSSFES 77
V Y+ NW+ Y P+D++ D THI++AF W K +
Sbjct: 6 VVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDK 62
Query: 78 NDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVP 137
DE + G +++ LKK N LKTLL+IGGW++ + FK + + R+ F +++
Sbjct: 63 WDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTY-SPNFKTPASTEEGRKKFADTSLK 121
Query: 138 FLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEA-EAQEVKKPRLLLTAAVPVGP 196
++ FDG+DI+WEYP ++VLLLK REA +A A+ + LLT A P GP
Sbjct: 122 LMKDLGFDGIDINWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGP 181
Query: 197 DNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGH 232
N + + YLDF NLMAYDF G W+ GH
Sbjct: 182 QNYN-KLKLAEMDKYLDFWNLMAYDFSGSWDKVSGH 216
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 65/175 (37%), Gaps = 47/175 (26%)
Query: 248 REAFEA-EAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
REA +A A+ + LLT A P GP N + + YLDF NLMAYDF G W+
Sbjct: 155 REALDAYSAKHPNGKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKV 213
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
GH + + P++ E
Sbjct: 214 SGHMSNV---------------------------------------------FPSTTKPE 228
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAG 421
++++ Y + +P K+++GMP YGR F T+ N G + G
Sbjct: 229 STPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENG 283
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 13/125 (10%)
Query: 425 ISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA 484
+ K+++GMP YGR+F D G E G + + +V E+ A
Sbjct: 246 VPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGAQVTELEDIAA 305
Query: 485 GYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD-----DFTG 539
Y +D + YL+ +D K K ++ NG GG M W D G
Sbjct: 306 SYSYDKNKR--YLIS------YDTVKIAGKKAEYITKNGMGGGMWWESSSDKTGNESLVG 357
Query: 540 TVCGG 544
TV G
Sbjct: 358 TVVNG 362
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 127/261 (48%), Gaps = 61/261 (23%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG----------------------- 65
++V YY +W+ Y + DI+P THI +AF
Sbjct: 13 KIVGYYPSWAAYGRN---YNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNPVTWTC 69
Query: 66 --------------------WLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTL 105
W+ GK + ++ D+ G + ++ +LK+ NP LKT+
Sbjct: 70 QNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNI---NQLNKLKQTNPNLKTI 126
Query: 106 LAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYP--AGTD----- 158
+++GGW++ + +F +++ + +R+ F SAV FLR+ NFDG+D+DWEYP G D
Sbjct: 127 ISVGGWTW-SNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKR 185
Query: 159 --DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFIN 216
DK+NY LLL ++RE +A A V + LLT A ++ +A +D+IN
Sbjct: 186 PEDKQNYTLLLSKIREKLDA-AGAVDGKKYLLTIASGASA-TYAANTELAKIAAIVDWIN 243
Query: 217 LMAYDFHGKWESQVGHNAPLR 237
+M YDF+G W+ HNAPL
Sbjct: 244 IMTYDFNGAWQKISAHNAPLN 264
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 129/338 (38%), Gaps = 101/338 (29%)
Query: 212 LDFINLMAYDFHG---KWESQV--GHNAPLRSPSSDSEWQL-----REAFEAEAQEVKKP 261
+DF L Y+F G WE V G + + P + L RE +A A V
Sbjct: 156 VDF--LRKYNFDGVDLDWEYPVSGGLDGNSKRPEDKQNYTLLLSKIREKLDA-AGAVDGK 212
Query: 262 RLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSE 321
+ LLT A ++ +A +D+IN+M YDF+G W+ HNAPL
Sbjct: 213 KYLLTIASGASA-TYAANTELAKIAAIVDWINIMTYDFNGAWQKISAHNAPLN------- 264
Query: 322 WRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYE 381
+D A A+G + + AG + +
Sbjct: 265 ---------------------------------YDPAASAAGVPDANTFNVAAGAQGHLD 291
Query: 382 KYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTISKEKLMIGMPTYGRSF 441
+P KL++G+P YGR + G +AG G+
Sbjct: 292 AGVPAAKLVLGVPFYGRGW--------------DGCAQAGN---------------GQYQ 322
Query: 442 TLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGYV--WDDEMKVPYLVH 499
T +GG G T EAG +Y++ N GY W+D KVPYL +
Sbjct: 323 TC------------TGGSSVG--TWEAGSFDFYDLEANYINKNGYTRYWNDTAKVPYLYN 368
Query: 500 GD--QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 535
+++ +DD +S+ YK ++K G GGAM W + D
Sbjct: 369 ASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGD 406
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 121/246 (49%), Gaps = 20/246 (8%)
Query: 12 RRRLRRPSIKSKPERLLEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG------ 65
R ++++ V Y+ NW+ Y P+D+ + TH+++AF
Sbjct: 27 NRDTSSTDLEARASSGYRSVVYFVNWAIYGRN---HNPQDLPVERLTHVLYAFANVRPET 83
Query: 66 --------WLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQK 117
W K +S +T + G +++ LKK N LK LL+IGGW++ +
Sbjct: 84 GEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTY-SPN 142
Query: 118 FKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEA- 176
F + + R+ F +AV L+ FDGLDIDWEYP ++VLLLKE+R A ++
Sbjct: 143 FAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYPENDQQANDFVLLLKEVRTALDSY 202
Query: 177 EAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPL 236
A LLT A P GPD IK + + + LDF NLMAYD+ G + S GH A +
Sbjct: 203 SAANAGGQHFLLTVASPAGPDKIKVLH-LKDMDQQLDFWNLMAYDYAGSFSSLSGHQANV 261
Query: 237 RSPSSD 242
+ +S+
Sbjct: 262 YNDTSN 267
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 47/160 (29%)
Query: 246 QLREAFEA-EAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWE 304
++R A ++ A LLT A P GPD IK + + + LDF NLMAYD+ G +
Sbjct: 194 EVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLH-LKDMDQQLDFWNLMAYDYAGSFS 252
Query: 305 SQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGG 364
S GH A + + +S+ L P
Sbjct: 253 SLSGHQANVYNDTSNP-----------------LSTP----------------------- 272
Query: 365 GEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTN 404
+ + Y +P K+++GMP YGR+F T+
Sbjct: 273 -----FNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTD 307
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 425 ISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA 484
+ K+++GMP YGRSF D G P +G G+ G + E G Y + +
Sbjct: 287 VPANKIVLGMPLYGRSFANTDGP----GKPYNGVGQ-GSW--ENGVWDYKALPQA--GAT 337
Query: 485 GYVWDDEM-KVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 535
+V D M Y + +D+ + K ++K G GGAM W D
Sbjct: 338 EHVLPDIMASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 389
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 31 VCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG--------------WLKKGKLSSFE 76
V Y+ NW+ Y P+D+ + TH+++AF W K +
Sbjct: 8 VVYFVNWAIYGRN---HNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGD 64
Query: 77 SNDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAV 136
S +T + G +++ LKK N LK LL+IGGW++ + F + + R+ F +AV
Sbjct: 65 SWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTY-SPNFAPAASTDAGRKNFAKTAV 123
Query: 137 PFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEA-EAQEVKKPRLLLTAAVPVG 195
L+ FDGLDIDWEYP ++VLLL+E+R A ++ A LLT A P G
Sbjct: 124 KLLQDLGFDGLDIDWEYPENDQQANDFVLLLREVRTALDSYSAANAGGQHFLLTVASPAG 183
Query: 196 PDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSD 242
PD IK + + + LDF NLMAYD+ G + S GH A + + +S+
Sbjct: 184 PDKIKVLH-LKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSN 229
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 47/160 (29%)
Query: 246 QLREAFEA-EAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWE 304
++R A ++ A LLT A P GPD IK + + + LDF NLMAYD+ G +
Sbjct: 156 EVRTALDSYSAANAGGQHFLLTVASPAGPDKIKVLH-LKDMDQQLDFWNLMAYDYAGSFS 214
Query: 305 SQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGG 364
S GH A + + +S+ L P
Sbjct: 215 SLSGHQANVYNDTSNP-----------------LSTP----------------------- 234
Query: 365 GEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTN 404
+ + Y +P K+++GMP YGR+F T+
Sbjct: 235 -----FNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTD 269
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 425 ISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA 484
+ K+++GMP YGRSF D G P +G G+ + E G Y + +
Sbjct: 249 VPANKIVLGMPLYGRSFANTDGP----GKPYNGVGQG---SWENGVWDYKALPQA--GAT 299
Query: 485 GYVWDDEM-KVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 535
+V D M Y + +D+ + K ++K G GGAM W D
Sbjct: 300 EHVLPDIMASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 351
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 104/197 (52%), Gaps = 7/197 (3%)
Query: 46 KFQPEDIEPDLCTHIIFAFGWLK-KGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKT 104
+F DI+ L TH+ AF L + + S ++ K + +++ NP +KT
Sbjct: 15 EFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPK-----FSTFTQTVQRRNPSVKT 69
Query: 105 LLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYV 164
LL+IGG + M+ + SR++FI S++ R F GLD+DWEYP+ + N+
Sbjct: 70 LLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSSATEMTNFG 129
Query: 165 LLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHG 224
LL+E R A AEA KPRLLL AAV + Y V AVA LD++NLMAYDF+G
Sbjct: 130 TLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYDFYG 189
Query: 225 -KWESQVGHNAPLRSPS 240
W G A L PS
Sbjct: 190 PGWSRVTGPPAALFDPS 206
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 118/324 (36%), Gaps = 98/324 (30%)
Query: 219 AYDFHG---KWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRLLLTAAVPVGPDN 275
+Y FHG WE + EW R A AEA KPRLLL AAV +
Sbjct: 106 SYGFHGLDLDWEYPSSATEMTNFGTLLREW--RSAVVAEASSSGKPRLLLAAAVFYSNNY 163
Query: 276 IKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMW 335
Y V AVA LD++NLMAYDF+G W
Sbjct: 164 YSVLYPVSAVASSLDWVNLMAYDFYGP-------------------------------GW 192
Query: 336 VRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPT 395
R+ P L DP S G G +AG S+ + LP +K ++G P
Sbjct: 193 SRVTGPPA----ALFDP---------SNAGPSG----DAGTRSWIQAGLPAKKAVLGFPY 235
Query: 396 YGRTFTLTNPAVFKVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPA 455
YG + LTN +P +G + + +I
Sbjct: 236 YGYAWRLTNANSHSYYAPTTGAAISPDGSI------------------------------ 265
Query: 456 SGGGEPGKYTAEAGFMSYYEVCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYK 515
G G+ K+ ++ NGA V++ + Y G W+G+DD +SI K
Sbjct: 266 -GYGQIRKF--------------IVDNGATTVYNSTVVGDYCYAGTNWIGYDDNQSIVTK 310
Query: 516 MNWLKDNGYGGAMVWTVDMDDFTG 539
+ + K G G W V DD +G
Sbjct: 311 VRYAKQRGLLGYFSWHVGADDNSG 334
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 100/192 (52%), Gaps = 6/192 (3%)
Query: 50 EDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIG 109
+I+ L TH+ AF L +L+ + E +D + +++ NP +KT L+I
Sbjct: 18 NNIDSTLFTHLFCAFADLNP-QLNQLIISPENQDS---FRQFTSTVQRKNPSVKTFLSIA 73
Query: 110 GWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKE 169
G + + M++ SR++FI S++ RQ F GLD+DWEYP D N LL E
Sbjct: 74 GGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAADMTNLGTLLNE 133
Query: 170 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHG-KWE- 227
R A EA+ + LLLTAAV P Y V ++A LD+INLMAYDF+G W
Sbjct: 134 WRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMAYDFYGPNWSP 193
Query: 228 SQVGHNAPLRSP 239
SQ +A L P
Sbjct: 194 SQTNSHAQLFDP 205
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 115/296 (38%), Gaps = 98/296 (33%)
Query: 243 SEWQLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHG- 301
+EW R A EA+ + LLLTAAV P Y V ++A LD+INLMAYDF+G
Sbjct: 132 NEW--RTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMAYDFYGP 189
Query: 302 KWE-SQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAP 360
W SQ +A L P + +S + N W++ G
Sbjct: 190 NWSPSQTNSHAQLFDPVN------HVSGSDGINAWIQAG--------------------- 222
Query: 361 ASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKA 420
+P +KL++G+P YG + L N + + +PA+G
Sbjct: 223 -----------------------VPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAG---- 255
Query: 421 GEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCE-M 479
K ++GA + G M+Y + + +
Sbjct: 256 ---------------------------KSNVGA------------VDDGSMTYNRIRDYI 276
Query: 480 LRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 535
+ + A V++ + Y G W+ +DD +++R K+N++K G G W V D
Sbjct: 277 VESRATTVYNATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 100/192 (52%), Gaps = 6/192 (3%)
Query: 50 EDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIG 109
+I+ L TH+ AF L +L+ + E +D + +++ NP +KT L+I
Sbjct: 18 NNIDSTLFTHLFCAFADLNP-QLNQLIISPENQDS---FRQFTSTVQRKNPSVKTFLSIA 73
Query: 110 GWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKE 169
G + + M++ SR++FI S++ RQ F GLD+DW+YP D N LL E
Sbjct: 74 GGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLSAADMTNLGTLLNE 133
Query: 170 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHG-KWE- 227
R A EA+ + LLLTAAV P Y V ++A LD+INLMAYDF+G W
Sbjct: 134 WRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMAYDFYGPNWSP 193
Query: 228 SQVGHNAPLRSP 239
SQ +A L P
Sbjct: 194 SQTNSHAQLFDP 205
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 115/296 (38%), Gaps = 98/296 (33%)
Query: 243 SEWQLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHG- 301
+EW R A EA+ + LLLTAAV P Y V ++A LD+INLMAYDF+G
Sbjct: 132 NEW--RTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMAYDFYGP 189
Query: 302 KWE-SQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAP 360
W SQ +A L P + +S + N W++ G
Sbjct: 190 NWSPSQTNSHAQLFDPVN------HVSGSDGINAWIQAG--------------------- 222
Query: 361 ASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKA 420
+P +KL++G+P YG + L N + + +PA+G
Sbjct: 223 -----------------------VPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAG---- 255
Query: 421 GEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCE-M 479
K ++GA + G M+Y + + +
Sbjct: 256 ---------------------------KSNVGA------------VDDGSMTYNRIRDYI 276
Query: 480 LRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 535
+ + A V++ + Y G W+ +DD +++R K+N++K G G W V D
Sbjct: 277 VESRATTVYNATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 122/279 (43%), Gaps = 72/279 (25%)
Query: 31 VCYYTNWSQYRTKIGKFQPEDIE----PDLCTHIIFAFGWLKKGKLSSFESN-------- 78
V Y+ W Y FQ + ++ THI ++FG + L+ F +N
Sbjct: 12 VGYFAQWGVYGRA---FQAKQLDVSGTAKNLTHINYSFGNINNQTLTCFMANKAQGTGPN 68
Query: 79 ------------------DETKDGKV--------GLYERIEQLKKANPKLKTLLAIGGWS 112
D++ GK G + +++QLK NPKLK ++++GGW+
Sbjct: 69 GSDGAGDAWADFGMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWT 128
Query: 113 FGTQKFKEMSKSRYSRQTFIYSAVPFLRQRN----------------FDGLDIDWEYPA- 155
+ ++ F + + + SRQ + S + + N FDG+DIDWE+P
Sbjct: 129 W-SKNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGIDIDWEWPGT 187
Query: 156 -------GTD---DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNI-KGGYD 204
G D D+ N+ LL E R+ +A K + +L+A +P P +I GG+D
Sbjct: 188 NSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNK-KYVLSAFLPANPADIDAGGWD 246
Query: 205 VPAVAGYLDFINLMAYDFHGKWE-SQVGHNAPLRSPSSD 242
PA LDF ++ YD HG W + GH A L +D
Sbjct: 247 DPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPAD 285
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 26/132 (19%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNI-KGGYDVPAVAGYLDFINLMAYDFHGKWE 304
+ R+ +A K + +L+A +P P +I GG+D PA LDF ++ YD HG W
Sbjct: 211 EFRKQLDAYGSTNNK-KYVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWN 269
Query: 305 -SQVGHNAPL-------RSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFD 356
+ GH A L R+PS K+ S + A ++ G +DP +
Sbjct: 270 PTLTGHQANLYDDPADPRAPS------KKFSADKAVKKYLAAG----------IDPKQLG 313
Query: 357 IGAPASGGGEPG 368
+G A G G G
Sbjct: 314 LGLAAYGRGWTG 325
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 19/134 (14%)
Query: 425 ISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA 484
I ++L +G+ YGR +T PA+ G PG Y + E + L+
Sbjct: 307 IDPKQLGLGLAAYGRGWT--GAKNVSPWGPATDG-APGTYE------TANEDYDKLKTLG 357
Query: 485 GYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGG 544
+D + G QW +D+ + + K +++ G GG M W + G
Sbjct: 358 TDHYDAATGSAWRYDGTQWWSYDNIATTKQKTDYIVSKGLGGGMWWELS----------G 407
Query: 545 DVKYPLIGAMREEL 558
D L+GAM ++
Sbjct: 408 DRNGELVGAMSDKF 421
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 115/251 (45%), Gaps = 23/251 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQ-RNFD 145
G + ++ LK+A+P LK L +IGGW+ F + R F+ S FL+ + FD
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 146 GLDIDWEYPAGT---------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGP 196
G+DIDWE+P G D + YVLL+KELR + + E + + LT+A+ G
Sbjct: 286 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGR-KYELTSAISAGK 344
Query: 197 DNI-KGGYDVPAVAGYLDFINLMAYDFHGKWE-SQVGHNAPLRSPS--SDSEWQLREAFE 252
D I K Y+V + +D I LM+YDF+G ++ +GH L +P+ D+ +
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVN 402
Query: 253 AEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAP 312
A + KP ++ G +G V + F G WE+ +
Sbjct: 403 ALLTQGVKPGKIVVGTAMYG----RGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQ 458
Query: 313 LRSPSSDSEWR 323
+ S EW+
Sbjct: 459 IASQFMSGEWQ 469
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 429 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA-GYV 487
K+++G YGR +T V+ + +I + G P K T E G + Y ++ +G Y
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYRQIASQFMSGEWQYT 471
Query: 488 WDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
+D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 472 YDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 115/251 (45%), Gaps = 23/251 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQ-RNFD 145
G + ++ LK+A+P LK L +IGGW+ F + R F+ S FL+ + FD
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 146 GLDIDWEYPAGT---------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGP 196
G+DIDWE+P G D + YVLL+KELR + + E + + LT+A+ G
Sbjct: 286 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGR-KYELTSAISAGK 344
Query: 197 DNI-KGGYDVPAVAGYLDFINLMAYDFHGKWE-SQVGHNAPLRSPS--SDSEWQLREAFE 252
D I K Y+V + +D I LM+YDF+G ++ +GH L +P+ D+ +
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVN 402
Query: 253 AEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAP 312
A + KP ++ G +G V + F G WE+ +
Sbjct: 403 ALLTQGVKPGKIVVGTAMYG----RGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQ 458
Query: 313 LRSPSSDSEWR 323
+ S EW+
Sbjct: 459 IASQFMSGEWQ 469
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 429 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA-GYV 487
K+++G YGR +T V+ + +I + G P K T E G + Y ++ +G Y
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYRQIASQFMSGEWQYT 471
Query: 488 WDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
+D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 472 YDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 115/251 (45%), Gaps = 23/251 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQ-RNFD 145
G + ++ LK+A+P LK L +IGGW+ F + R F+ S FL+ + FD
Sbjct: 251 GNFGQLMALKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFD 308
Query: 146 GLDIDWEYPAGT---------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGP 196
G+DIDWE+P G D + YVLL+KELR + + E + + LT+A+ G
Sbjct: 309 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGR-KYELTSAISAGK 367
Query: 197 DNI-KGGYDVPAVAGYLDFINLMAYDFHGKWE-SQVGHNAPLRSPS--SDSEWQLREAFE 252
D I K Y+V + +D I LM+YDF+G ++ +GH L +P+ D+ +
Sbjct: 368 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVN 425
Query: 253 AEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAP 312
A + KP ++ G +G V + F G WE+ +
Sbjct: 426 ALLAQGVKPGKIVVGTAMYG----RGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQ 481
Query: 313 LRSPSSDSEWR 323
+ S EW+
Sbjct: 482 IASQFMSGEWQ 492
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 429 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA-GYV 487
K+++G YGR +T V+ + +I + G P K T E G + Y ++ +G Y
Sbjct: 436 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYRQIASQFMSGEWQYT 494
Query: 488 WDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
+D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 495 YDATAEAPYVFKPSTGD-LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 545
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 23/251 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQ-RNFD 145
G + ++ LK+A+P LK L +IGGW+ F + R F+ S FL+ + FD
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 146 GLDIDWEYPAGT---------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGP 196
G+DIDWE+P G D + YVLL+KELR + + E + + LT+A+ G
Sbjct: 286 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSTETGR-KYELTSAISAGK 344
Query: 197 DNI-KGGYDVPAVAGYLDFINLMAYDFHGKWE-SQVGHNAPLRSPS--SDSEWQLREAFE 252
D I K Y+V + +D I LM+YDF+G ++ +GH L +P+ D+ +
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVN 402
Query: 253 AEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAP 312
A + KP ++ G +G V + F G WE+ +
Sbjct: 403 ALLAQGVKPGKIVVGTAMYG----RGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQ 458
Query: 313 LRSPSSDSEWR 323
+ EW+
Sbjct: 459 IAGQFMSGEWQ 469
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 429 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA-GYV 487
K+++G YGR +T V+ + +I + G P K T E G + Y ++ +G Y
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYRQIAGQFMSGEWQYT 471
Query: 488 WDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
+D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 472 YDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 23/251 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQ-RNFD 145
G + ++ LK+A+P LK L +IGGW+ F + R F+ S FL+ + FD
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 146 GLDIDWEYPAGT---------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGP 196
G+DIDWE+P G D + YVLL+KELR + + E + + LT+A+ G
Sbjct: 286 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGK 344
Query: 197 DNI-KGGYDVPAVAGYLDFINLMAYDFHGKWE-SQVGHNAPLRSPS--SDSEWQLREAFE 252
D I K Y+V + +D I LM+YDF+G ++ +GH L +P+ D+ +
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVN 402
Query: 253 AEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAP 312
A + KP ++ G +G V + F G WE+ +
Sbjct: 403 ALLAQGVKPGKIVVGTAMYG----RGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQ 458
Query: 313 LRSPSSDSEWR 323
+ EW+
Sbjct: 459 IAGQFMSGEWQ 469
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 429 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA-GYV 487
K+++G YGR +T V+ + +I + G P K T E G + Y ++ +G Y
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYRQIAGQFMSGEWQYT 471
Query: 488 WDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
+D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 472 YDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 114/251 (45%), Gaps = 23/251 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQ-RNFD 145
G + ++ LK+A+P LK L +IGGW+ F + R F+ S FL+ + FD
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 146 GLDIDWEYPAGT---------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGP 196
G+DIDW++P G D + YVLL+KELR + + E + + LT+A+ G
Sbjct: 286 GVDIDWQFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGK 344
Query: 197 DNI-KGGYDVPAVAGYLDFINLMAYDFHGKWE-SQVGHNAPLRSPS--SDSEWQLREAFE 252
D I K Y+V + +D I LM+YDF+G ++ +GH L +P+ D+ +
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVN 402
Query: 253 AEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAP 312
A + KP ++ G +G V + F G WE+ +
Sbjct: 403 ALLAQGVKPGKIVVGTAMYG----RGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQ 458
Query: 313 LRSPSSDSEWR 323
+ EW+
Sbjct: 459 IAGQFMSGEWQ 469
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 429 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA-GYV 487
K+++G YGR +T V+ + +I + G P K T E G + Y ++ +G Y
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYRQIAGQFMSGEWQYT 471
Query: 488 WDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
+D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 472 YDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 23/251 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQ-RNFD 145
G + ++ LK+A+P LK L +IGGW+ F + R F+ S FL+ + FD
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 146 GLDIDWEYPAGT---------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGP 196
G+DIDW +P G D + YVLL+KELR + + E + + LT+A+ G
Sbjct: 286 GVDIDWLFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGK 344
Query: 197 DNI-KGGYDVPAVAGYLDFINLMAYDFHGKWE-SQVGHNAPLRSPS--SDSEWQLREAFE 252
D I K Y+V + +D I LM+YDF+G ++ +GH L +P+ D+ +
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVN 402
Query: 253 AEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAP 312
A + KP ++ G +G V + F G WE+ +
Sbjct: 403 ALLAQGVKPGKIVVGTAMYG----RGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQ 458
Query: 313 LRSPSSDSEWR 323
+ S EW+
Sbjct: 459 IASQFMSGEWQ 469
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 429 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA-GYV 487
K+++G YGR +T V+ + +I + G P K T E G + Y ++ +G Y
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYRQIASQFMSGEWQYT 471
Query: 488 WDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
+D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 472 YDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 114/251 (45%), Gaps = 23/251 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQ-RNFD 145
G + ++ LK+A+P LK L +IGGW+ F + R F+ S FL+ + FD
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 146 GLDIDWEYPAGT---------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGP 196
G+DIDWE+P G D + YVLL+KELR + + E + + LT+A+ G
Sbjct: 286 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGK 344
Query: 197 DNI-KGGYDVPAVAGYLDFINLMAYDFHGKWE-SQVGHNAPLRSPS--SDSEWQLREAFE 252
D I K Y+V + +D I LM++DF+G ++ +GH L +P+ D+ +
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSFDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVN 402
Query: 253 AEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAP 312
A + KP ++ G +G V + F G WE+ +
Sbjct: 403 ALLAQGVKPGKIVVGTAMYG----RGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQ 458
Query: 313 LRSPSSDSEWR 323
+ EW+
Sbjct: 459 IAGQFMSGEWQ 469
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 429 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA-GYV 487
K+++G YGR +T V+ + +I + G P K T E G + Y ++ +G Y
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYRQIAGQFMSGEWQYT 471
Query: 488 WDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
+D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 472 YDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 113/251 (45%), Gaps = 23/251 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQ-RNFD 145
G + ++ LK+A+P LK L +IGGW+ F + R F+ S FL+ + FD
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 146 GLDIDWEYPAGT---------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGP 196
G+DI WE+P G D + YVLL+KELR + + E + + LT+A+ G
Sbjct: 286 GVDIAWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGK 344
Query: 197 DNI-KGGYDVPAVAGYLDFINLMAYDFHGKWE-SQVGHNAPLRSPS--SDSEWQLREAFE 252
D I K Y+V + +D I LM+YDF+G ++ +GH L +P+ D+ +
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVN 402
Query: 253 AEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAP 312
A + KP ++ G +G V + F G WE+ +
Sbjct: 403 ALLAQGVKPGKIVVGTAMYG----RGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQ 458
Query: 313 LRSPSSDSEWR 323
+ EW+
Sbjct: 459 IAGQFMSGEWQ 469
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 429 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA-GYV 487
K+++G YGR +T V+ + +I + G P K T E G + Y ++ +G Y
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYRQIAGQFMSGEWQYT 471
Query: 488 WDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
+D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 472 YDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 113/251 (45%), Gaps = 23/251 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQ-RNFD 145
G + ++ LK+A+P LK L +IGGW+ F + R F+ S FL+ + FD
Sbjct: 228 GNFGQLMALKQAHPDLKILPSIGGWTLSDPFF--FMGDKVKRDRFVGSVKEFLQTWKFFD 285
Query: 146 GLDIDWEYPAGT---------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGP 196
G+DIDWE+P G D + YVLL+KELR + + E + + LT+A+ G
Sbjct: 286 GVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGR-KYELTSAISAGK 344
Query: 197 DNI-KGGYDVPAVAGYLDFINLMAYDFHGKWE-SQVGHNAPLRSPS--SDSEWQLREAFE 252
D I K Y+V + +D I LM+Y F+G ++ +GH L +P+ D+ +
Sbjct: 345 DKIDKVAYNVAQNS--MDHIFLMSYAFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVN 402
Query: 253 AEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAP 312
A + KP ++ G +G V + F G WE+ +
Sbjct: 403 ALLAQGVKPGKIVVGTAMYG----RGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQ 458
Query: 313 LRSPSSDSEWR 323
+ EW+
Sbjct: 459 IAGQFMSGEWQ 469
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 429 KLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA-GYV 487
K+++G YGR +T V+ + +I + G P K T E G + Y ++ +G Y
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYRQIAGQFMSGEWQYT 471
Query: 488 WDDEMKVPYLVH---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
+D + PY+ GD + FDD +S++ K ++ D GG W +D D+
Sbjct: 472 YDATAEAPYVFKPSTGDL-ITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 15/165 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNF-D 145
G Y + LK+ NP LK + +IGGW+ + + K +R TF+ S FL+ F D
Sbjct: 230 GNYAMLMALKQRNPDLKIIPSIGGWTLSDPFYDFVDKK--NRDTFVASVKKFLKTWKFYD 287
Query: 146 GLDIDWEYPAG----------TDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVG 195
G+DIDWE+P G +D Y+ L++ELR + E + LT+A+ VG
Sbjct: 288 GVDIDWEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGR-TYELTSAIGVG 346
Query: 196 PDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPS 240
D I+ D Y+D+I M YDF+G W + GH L S
Sbjct: 347 YDKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGS 390
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 114/309 (36%), Gaps = 92/309 (29%)
Query: 265 LTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRK 324
LT+A+ VG D I+ D Y+D+I M YDF+G W + GH L S
Sbjct: 339 LTSAIGVGYDKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGS------- 390
Query: 325 QLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGK---YTAEAGFMSYYE 381
+ P + D G GEP K YTA+ G
Sbjct: 391 ------------------------FMRPGQCD-GGGVDENGEPYKGPAYTADNGIQLLLA 425
Query: 382 KYLPKEKLIIGMPTYGRTF------TLTNPAVFKVNSPASGGGKAGEYTISKEKLMIGMP 435
+ +P KL++G YGR + TLT+P N P +G + KL
Sbjct: 426 QGVPANKLVLGTAMYGRGWEGVTPDTLTDP-----NDPMTG--------TATGKLK---- 468
Query: 436 TYGRSFTLVDPTKFDIGAPASGGGEPG--KYTAEAGFMSYYEVCEMLRNGAGYVWDDEMK 493
G+ A G E G Y FM NG Y +D + +
Sbjct: 469 ----------------GSTAQGVWEDGVIDYKGIKSFM--LGANNTGINGFEYGYDAQAE 510
Query: 494 VPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLI 551
P++ + + + FDD +S+ K N+ K G G W +D D+ GD+ +
Sbjct: 511 APWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN-------GDI----L 559
Query: 552 GAMREELNG 560
AM E + G
Sbjct: 560 NAMHEGMAG 568
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 90/186 (48%), Gaps = 34/186 (18%)
Query: 57 CTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYE------------RIEQLKKANPKLKT 104
TH+ ++FG + + E+N KD L+E ++ L+K NP LK
Sbjct: 54 ITHLNYSFGLIYNDEKD--ETNAALKD-PAHLHEIWLSPKVQADLQKLPALRKQNPDLKV 110
Query: 105 LLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT------- 157
LL++GGW G + F + + SR FI SA ++Q DG+D+DWE+P
Sbjct: 111 LLSVGGW--GARGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFPVNGAWGLVAS 168
Query: 158 --DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFI 215
D+ N+ LLK LREA + L+T AV ++ K DV AVA L++I
Sbjct: 169 QPADRDNFTALLKSLREAVGEQK--------LVTIAVGANAESPKSWVDVKAVAPVLNYI 220
Query: 216 NLMAYD 221
NL YD
Sbjct: 221 NLXTYD 226
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 488 WDDEMKVPYL-VHGDQ-----WVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
WDDE KVP+L V + + +++ +S+ K +++K G GA W DD
Sbjct: 350 WDDEAKVPWLSVQSAEGKPLFALSYENPRSVAIKADYIKAKGLAGAXFWEYGADD 404
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 248 REAFEAEAQEVKKP---RLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYD 298
R+ F A + +++ + L+T AV ++ K DV AVA L++INL YD
Sbjct: 173 RDNFTALLKSLREAVGEQKLVTIAVGANAESPKSWVDVKAVAPVLNYINLXTYD 226
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNF-D 145
G Y + LK+ NP LK + +IGGW+ + + K +R TF+ S FL+ F D
Sbjct: 230 GNYAMLMALKQRNPDLKIIPSIGGWTLSDPFYDFVDKK--NRDTFVASVKKFLKTWKFYD 287
Query: 146 GLDIDWEYPAG----------TDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVG 195
G+DIDW +P G +D Y+ L++ELR + E + LT+A+ VG
Sbjct: 288 GVDIDWMFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGR-TYELTSAIGVG 346
Query: 196 PDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPS 240
D I+ D Y+D+I M YDF+G W + GH L S
Sbjct: 347 YDKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGS 390
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 114/309 (36%), Gaps = 92/309 (29%)
Query: 265 LTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRK 324
LT+A+ VG D I+ D Y+D+I M YDF+G W + GH L S
Sbjct: 339 LTSAIGVGYDKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGS------- 390
Query: 325 QLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGK---YTAEAGFMSYYE 381
+ P + D G GEP K YTA+ G
Sbjct: 391 ------------------------FMRPGQCD-GGGVDENGEPYKGPAYTADNGIQLLLA 425
Query: 382 KYLPKEKLIIGMPTYGRTF------TLTNPAVFKVNSPASGGGKAGEYTISKEKLMIGMP 435
+ +P KL++G YGR + TLT+P N P +G + KL
Sbjct: 426 QGVPANKLVLGTAMYGRGWEGVTPDTLTDP-----NDPMTG--------TATGKLK---- 468
Query: 436 TYGRSFTLVDPTKFDIGAPASGGGEPG--KYTAEAGFMSYYEVCEMLRNGAGYVWDDEMK 493
G+ A G E G Y FM NG Y +D + +
Sbjct: 469 ----------------GSTAQGVWEDGVIDYKGIKSFM--LGANNTGINGFEYGYDAQAE 510
Query: 494 VPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLI 551
P++ + + + FDD +S+ K N+ K G G W +D D+ GD+ +
Sbjct: 511 APWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN-------GDI----L 559
Query: 552 GAMREELNG 560
AM E + G
Sbjct: 560 NAMHEGMAG 568
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 18/230 (7%)
Query: 36 NWSQYRTKIGKFQPEDIEP---DLCTHIIFAFGWLKKGKLSSFESNDETKDGKV-GLYER 91
N+++ T + F +I P THI F+F + +++ T D K + R
Sbjct: 20 NYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDP--ATNDAKARDVVNR 77
Query: 92 IEQLKKANPKLKTLLAIGGWSFGTQ------KFKEMSKSRYSRQTFIYSAVPFLRQRNFD 145
+ LK NP L+ + +IGGW + + K+ SR F S V ++ FD
Sbjct: 78 LTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFD 137
Query: 146 GLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRL--LLTAAVPVGPDNIKGGY 203
G+DIDWEYP + ++ L+E+R + + L LT A G + Y
Sbjct: 138 GVDIDWEYPQAA-EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYY 196
Query: 204 D-VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEW--QLREA 250
+ + LD+INLM YD G WE H A L ++ + LREA
Sbjct: 197 SKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 103/264 (39%), Gaps = 52/264 (19%)
Query: 289 LDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFT 348
LD+INLM YD G WE H A L ++ + L N W L T
Sbjct: 206 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEEL---------T 256
Query: 349 LVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVF 408
P+ F + A+ + M + +P K+++G+P YGR F
Sbjct: 257 RAFPSPFSLTVDAA---------VQQHLMM---EGVPSAKIVMGVPFYGRAFK------- 297
Query: 409 KVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEA 468
GG G+Y+ P+ + LV G E +
Sbjct: 298 -----GVSGGNGGQYSSHSTPGEDPYPS--TDYWLV-------------GCEECVRDKDP 337
Query: 469 GFMSYYEVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRYKMNWLKDNGY 524
SY ++ +ML+ GY +W+D+ K PYL H +V +DD +S +YK ++K
Sbjct: 338 RIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQL 397
Query: 525 GGAMVWTVDMDDFTGTVCGGDVKY 548
GG M W + D+ G + +Y
Sbjct: 398 GGVMFWHLGQDNRNGDLLAALDRY 421
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 105/243 (43%), Gaps = 25/243 (10%)
Query: 30 VVCYY-------TNWSQYRTKIGKFQPEDIEP---DLCTHIIFAFGWLKKGKLSSFESND 79
V+ YY N+++ T + F +I P THI F+F + +++
Sbjct: 7 VIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDP-- 64
Query: 80 ETKDGKV-GLYERIEQLKKANPKLKTLLAIGGWSFGTQ------KFKEMSKSRYSRQTFI 132
T D K + R+ LK NP L+ + +IGGW + + K+ SR F
Sbjct: 65 ATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFA 124
Query: 133 YSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRL--LLTA 190
S V ++ FDG+DIDWEYP + ++ L+E+R + + L LT
Sbjct: 125 QSCVRIMKDYGFDGVDIDWEYPQAA-EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 183
Query: 191 AVPVGPDNIKGGYD-VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEW--QL 247
A G + Y + + LD+INLM YD G WE H A L ++ + L
Sbjct: 184 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNAL 243
Query: 248 REA 250
REA
Sbjct: 244 REA 246
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 103/264 (39%), Gaps = 52/264 (19%)
Query: 289 LDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFT 348
LD+INLM YD G WE H A L ++ + L N W L T
Sbjct: 206 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEEL---------T 256
Query: 349 LVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVF 408
P+ F + A+ + M + +P K+++G+P YGR F
Sbjct: 257 RAFPSPFSLTVDAA---------VQQHLMM---EGVPSAKIVMGVPFYGRAFK------- 297
Query: 409 KVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEA 468
GG G+Y+ P+ + LV G E +
Sbjct: 298 -----GVSGGNGGQYSSHSTPGEDPYPS--TDYWLV-------------GCEECVRDKDP 337
Query: 469 GFMSYYEVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRYKMNWLKDNGY 524
SY ++ +ML+ GY +W+D+ K PYL H +V +DD +S +YK ++K
Sbjct: 338 RIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQL 397
Query: 525 GGAMVWTVDMDDFTGTVCGGDVKY 548
GG M W + D+ G + +Y
Sbjct: 398 GGVMFWHLGQDNRNGDLLAALDRY 421
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 105/243 (43%), Gaps = 25/243 (10%)
Query: 30 VVCYY-------TNWSQYRTKIGKFQPEDIEP---DLCTHIIFAFGWLKKGKLSSFESND 79
V+ YY N+++ T + F +I P THI F+F + +++
Sbjct: 6 VIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDP-- 63
Query: 80 ETKDGKV-GLYERIEQLKKANPKLKTLLAIGGWSFGTQ------KFKEMSKSRYSRQTFI 132
T D K + R+ LK NP L+ + +IGGW + + K+ SR F
Sbjct: 64 ATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFA 123
Query: 133 YSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRL--LLTA 190
S V ++ FDG+DIDWEYP + ++ L+E+R + + L LT
Sbjct: 124 QSCVRIMKDYGFDGVDIDWEYPQAA-EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 182
Query: 191 AVPVGPDNIKGGYD-VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEW--QL 247
A G + Y + + LD+INLM YD G WE H A L ++ + L
Sbjct: 183 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNAL 242
Query: 248 REA 250
REA
Sbjct: 243 REA 245
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 103/264 (39%), Gaps = 52/264 (19%)
Query: 289 LDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFT 348
LD+INLM YD G WE H A L ++ + L N W L T
Sbjct: 205 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEEL---------T 255
Query: 349 LVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVF 408
P+ F + A+ + M + +P K+++G+P YGR F
Sbjct: 256 RAFPSPFSLTVDAA---------VQQHLMM---EGVPSAKIVMGVPFYGRAFK------- 296
Query: 409 KVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEA 468
GG G+Y+ P+ + LV G E +
Sbjct: 297 -----GVSGGNGGQYSSHSTPGEDPYPS--TDYWLV-------------GCEECVRDKDP 336
Query: 469 GFMSYYEVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRYKMNWLKDNGY 524
SY ++ +ML+ GY +W+D+ K PYL H +V +DD +S +YK ++K
Sbjct: 337 RIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQL 396
Query: 525 GGAMVWTVDMDDFTGTVCGGDVKY 548
GG M W + D+ G + +Y
Sbjct: 397 GGVMFWHLGQDNRNGDLLAALDRY 420
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 25/243 (10%)
Query: 30 VVCYY-------TNWSQYRTKIGKFQPEDIEP---DLCTHIIFAFGWLKKGKLSSFESND 79
V+ YY N+++ T + F +I P THI F+F + +++
Sbjct: 7 VIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDP-- 64
Query: 80 ETKDGKV-GLYERIEQLKKANPKLKTLLAIGGWSFGTQ------KFKEMSKSRYSRQTFI 132
T D K + R+ LK NP L+ + +IGGW + + K+ SR F
Sbjct: 65 ATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFA 124
Query: 133 YSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRL--LLTA 190
S V ++ FDG+DIDW+YP + ++ L+E+R + + L LT
Sbjct: 125 QSCVRIMKDYGFDGVDIDWQYPQAA-EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 183
Query: 191 AVPVGPDNIKGGYD-VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEW--QL 247
A G + Y + + LD+INLM YD G WE H A L ++ + L
Sbjct: 184 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNAL 243
Query: 248 REA 250
REA
Sbjct: 244 REA 246
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 103/264 (39%), Gaps = 52/264 (19%)
Query: 289 LDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFT 348
LD+INLM YD G WE H A L ++ + L N W L T
Sbjct: 206 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEEL---------T 256
Query: 349 LVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVF 408
P+ F + A+ + M + +P K+++G+P YGR F
Sbjct: 257 RAFPSPFSLTVDAA---------VQQHLMM---EGVPSAKIVMGVPFYGRAFK------- 297
Query: 409 KVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEA 468
GG G+Y+ P+ + LV G E +
Sbjct: 298 -----GVSGGNGGQYSSHSTPGEDPYPS--TDYWLV-------------GCEECVRDKDP 337
Query: 469 GFMSYYEVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRYKMNWLKDNGY 524
SY ++ +ML+ GY +W+D+ K PYL H +V +DD +S +YK ++K
Sbjct: 338 RIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQL 397
Query: 525 GGAMVWTVDMDDFTGTVCGGDVKY 548
GG M W + D+ G + +Y
Sbjct: 398 GGVMFWHLGQDNRNGDLLAALDRY 421
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 25/243 (10%)
Query: 30 VVCYY-------TNWSQYRTKIGKFQPEDIEP---DLCTHIIFAFGWLKKGKLSSFESND 79
V+ YY N+++ T + F +I P THI F+F + +++
Sbjct: 7 VIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDP-- 64
Query: 80 ETKDGKV-GLYERIEQLKKANPKLKTLLAIGGWSFGTQ------KFKEMSKSRYSRQTFI 132
T D K + R+ LK NP L+ + +IGGW + + K+ SR F
Sbjct: 65 ATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFA 124
Query: 133 YSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRL--LLTA 190
S V ++ FDG+DI+WEYP + ++ L+E+R + + L LT
Sbjct: 125 QSCVRIMKDYGFDGVDINWEYPQAA-EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 183
Query: 191 AVPVGPDNIKGGYD-VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEW--QL 247
A G + Y + + LD+INLM YD G WE H A L ++ + L
Sbjct: 184 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNAL 243
Query: 248 REA 250
REA
Sbjct: 244 REA 246
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 103/264 (39%), Gaps = 52/264 (19%)
Query: 289 LDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFT 348
LD+INLM YD G WE H A L ++ + L N W L T
Sbjct: 206 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEEL---------T 256
Query: 349 LVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVF 408
P+ F + A+ + M + +P K+++G+P YGR F
Sbjct: 257 RAFPSPFSLTVDAA---------VQQHLMM---EGVPSAKIVMGVPFYGRAFK------- 297
Query: 409 KVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEA 468
GG G+Y+ P+ + LV G E +
Sbjct: 298 -----GVSGGNGGQYSSHSTPGEDPYPS--TDYWLV-------------GCEECVRDKDP 337
Query: 469 GFMSYYEVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRYKMNWLKDNGY 524
SY ++ +ML+ GY +W+D+ K PYL H +V +DD +S +YK ++K
Sbjct: 338 RIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQL 397
Query: 525 GGAMVWTVDMDDFTGTVCGGDVKY 548
GG M W + D+ G + +Y
Sbjct: 398 GGVMFWHLGQDNRNGDLLAALDRY 421
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 25/243 (10%)
Query: 30 VVCYY-------TNWSQYRTKIGKFQPEDIEP---DLCTHIIFAFGWLKKGKLSSFESND 79
V+ YY N+++ T + F +I P THI F+F + +++
Sbjct: 7 VIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDP-- 64
Query: 80 ETKDGKV-GLYERIEQLKKANPKLKTLLAIGGWSFGTQ------KFKEMSKSRYSRQTFI 132
T D K + R+ LK NP L+ + +IGGW + + K+ SR F
Sbjct: 65 ATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFA 124
Query: 133 YSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRL--LLTA 190
S V ++ FDG++IDWEYP + ++ L+E+R + + L LT
Sbjct: 125 QSCVRIMKDYGFDGVNIDWEYPQAA-EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 183
Query: 191 AVPVGPDNIKGGYD-VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEW--QL 247
A G + Y + + LD+INLM YD G WE H A L ++ + L
Sbjct: 184 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNAL 243
Query: 248 REA 250
REA
Sbjct: 244 REA 246
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 103/264 (39%), Gaps = 52/264 (19%)
Query: 289 LDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFT 348
LD+INLM YD G WE H A L ++ + L N W L T
Sbjct: 206 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEEL---------T 256
Query: 349 LVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVF 408
P+ F + A+ + M + +P K+++G+P YGR F
Sbjct: 257 RAFPSPFSLTVDAA---------VQQHLMM---EGVPSAKIVMGVPFYGRAFK------- 297
Query: 409 KVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEA 468
GG G+Y+ P+ + LV G E +
Sbjct: 298 -----GVSGGNGGQYSSHSTPGEDPYPS--TDYWLV-------------GCEECVRDKDP 337
Query: 469 GFMSYYEVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRYKMNWLKDNGY 524
SY ++ +ML+ GY +W+D+ K PYL H +V +DD +S +YK ++K
Sbjct: 338 RIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQL 397
Query: 525 GGAMVWTVDMDDFTGTVCGGDVKY 548
GG M W + D+ G + +Y
Sbjct: 398 GGVMFWHLGQDNRNGDLLAALDRY 421
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 25/243 (10%)
Query: 30 VVCYY-------TNWSQYRTKIGKFQPEDIEP---DLCTHIIFAFGWLKKGKLSSFESND 79
V+ YY N+++ T + F +I P THI F+F + +++
Sbjct: 7 VIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDP-- 64
Query: 80 ETKDGKV-GLYERIEQLKKANPKLKTLLAIGGWSFGTQ------KFKEMSKSRYSRQTFI 132
T D K + R+ LK NP L+ + +IGGW + + K+ SR F
Sbjct: 65 ATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFA 124
Query: 133 YSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRL--LLTA 190
S V ++ FDG+DI+WEYP + ++ L+E+R + + L LT
Sbjct: 125 QSCVRIMKDYGFDGVDINWEYPQAA-EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 183
Query: 191 AVPVGPDNIKGGYD-VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEW--QL 247
A G + Y + + LD+INLM YD G WE H A L ++ + L
Sbjct: 184 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNAL 243
Query: 248 REA 250
REA
Sbjct: 244 REA 246
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 103/264 (39%), Gaps = 52/264 (19%)
Query: 289 LDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFT 348
LD+INLM YD G WE H A L ++ + L N W L T
Sbjct: 206 LDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEEL---------T 256
Query: 349 LVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVF 408
P+ F + A+ + M + +P K+++G+P YGR F
Sbjct: 257 RAFPSPFSLTVDAA---------VQQHLMM---EGVPSAKIVMGVPFYGRAFK------- 297
Query: 409 KVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEA 468
GG G+Y+ P+ + LV G E +
Sbjct: 298 -----GVSGGNGGQYSSHSTPGEDPYPS--TDYWLV-------------GCEECVRDKDP 337
Query: 469 GFMSYYEVCEMLRNGAGY--VWDDEMKVPYLVHGDQ--WVGFDDEKSIRYKMNWLKDNGY 524
SY ++ +ML+ GY +W+D+ K PYL H +V +DD +S +YK ++K
Sbjct: 338 RIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQL 397
Query: 525 GGAMVWTVDMDDFTGTVCGGDVKY 548
GG M W + D+ G + +Y
Sbjct: 398 GGVMFWHLGQDNRNGDLLAALDRY 421
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 15/165 (9%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNF-D 145
G Y + LK+ NP LK + +IGG + + + K +R TF+ S FL+ F D
Sbjct: 230 GNYAMLMALKQRNPDLKIIPSIGGGTLSDPFYDFVDKK--NRDTFVASVKKFLKTWKFYD 287
Query: 146 GLDIDWEYPAG----------TDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVG 195
G+DIDWE+P G +D Y+ L++ELR + E + LT+A+ VG
Sbjct: 288 GVDIDWEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGR-TYELTSAIGVG 346
Query: 196 PDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPS 240
D I+ D Y+D+I M YDF+G W + GH L S
Sbjct: 347 YDKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGS 390
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 114/309 (36%), Gaps = 92/309 (29%)
Query: 265 LTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRK 324
LT+A+ VG D I+ D Y+D+I M YDF+G W + GH L S
Sbjct: 339 LTSAIGVGYDKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGS------- 390
Query: 325 QLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGK---YTAEAGFMSYYE 381
+ P + D G GEP K YTA+ G
Sbjct: 391 ------------------------FMRPGQCD-GGGVDENGEPYKGPAYTADNGIQLLLA 425
Query: 382 KYLPKEKLIIGMPTYGRTF------TLTNPAVFKVNSPASGGGKAGEYTISKEKLMIGMP 435
+ +P KL++G YGR + TLT+P N P +G + KL
Sbjct: 426 QGVPANKLVLGTAMYGRGWEGVTPDTLTDP-----NDPMTG--------TATGKLK---- 468
Query: 436 TYGRSFTLVDPTKFDIGAPASGGGEPG--KYTAEAGFMSYYEVCEMLRNGAGYVWDDEMK 493
G+ A G E G Y FM NG Y +D + +
Sbjct: 469 ----------------GSTAQGVWEDGVIDYKGIKSFM--LGANNTGINGFEYGYDAQAE 510
Query: 494 VPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLI 551
P++ + + + FDD +S+ K N+ K G G W +D D+ GD+ +
Sbjct: 511 APWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN-------GDI----L 559
Query: 552 GAMREELNG 560
AM E + G
Sbjct: 560 NAMHEGMAG 568
>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPF-LRQRNFD 145
GL E ++ KL +IGGWS + F ++++ R+ F+ S V F +R F
Sbjct: 197 GLRELQKKAHAMGHKLDLAFSIGGWSL-SSYFSALAENPDERRVFVASVVDFFVRFPMFS 255
Query: 146 GLDIDWEYPAGTDDK---------KNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGP 196
+DIDWEYP G D+ +NYVLL+KELR A ++ + + + A V
Sbjct: 256 CVDIDWEYPGGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEISI-ACSGVXA 314
Query: 197 DNIKGGYDVPAVAGYLDFINLMAYDFHGK-WESQVGHNAPLRSPSSDSEWQLREAFEAEA 255
K D VA LD I LM+YDF G W +GH+ L SP E +L + AEA
Sbjct: 315 XLKKSNID-QLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFD-LSAEA 372
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 285 VAGYLDFINLMAYDFHGK-WESQVGHNAPLRSPSSDSEWRK-QLSVENAAN-MWVRLGAP 341
VA LD I LM+YDF G W +GH+ L SP E LS E A + + LG P
Sbjct: 325 VANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIP 384
Query: 342 KE 343
E
Sbjct: 385 ME 386
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 18/151 (11%)
Query: 422 EYTISKEKLMIGMPTYGRSFTLVDPT--KFDIGAPASG---GGEPGKYTAEAGFMSYYEV 476
E I E + +G YGRS D T ++ PA G G P + +M
Sbjct: 380 ELGIPMEXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDIVXNYMDAEHS 439
Query: 477 CEMLRNGAGYVWDDEMKVPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDM 534
M +NG + D +L ++ D ++++ K + N GG W+ D
Sbjct: 440 LSMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQ 499
Query: 535 DDFTGTVCGGDVKYPLIGAMREELNGIPRAN 565
D CG L A RE L + +N
Sbjct: 500 D------CG-----LLANAAREGLGYVADSN 519
>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPF-LRQRNFD 145
GL E ++ KL +IGGWS + F ++++ R+ F+ S V F +R F
Sbjct: 197 GLRELQKKAHAMGHKLDLAFSIGGWSL-SSYFSALAENPDERRVFVASVVDFFVRFPMFS 255
Query: 146 GLDIDWEYPAGTDDK---------KNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGP 196
+DIDWEYP G D+ +NYVLL+KELR A ++ + + + A V
Sbjct: 256 CVDIDWEYPGGGGDEGNISSDKDGENYVLLIKELRSALDSRFGYSNRXEISI-ACSGVXA 314
Query: 197 DNIKGGYDVPAVAGYLDFINLMAYDFHGK-WESQVGHNAPLRSPSSDSEWQLREAFEAEA 255
K D VA LD I LM+YDF G W +GH+ L SP E +L + AEA
Sbjct: 315 XLKKSNID-QLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFD-LSAEA 372
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 285 VAGYLDFINLMAYDFHGK-WESQVGHNAPLRSPSSDSEWRK-QLSVENAAN-MWVRLGAP 341
VA LD I LM+YDF G W +GH+ L SP E LS E A + + LG P
Sbjct: 325 VANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIP 384
Query: 342 KE 343
E
Sbjct: 385 ME 386
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 18/151 (11%)
Query: 422 EYTISKEKLMIGMPTYGRSFTLVDPT--KFDIGAPASG---GGEPGKYTAEAGFMSYYEV 476
E I E + +G YGRS D T ++ PA G G P + +M
Sbjct: 380 ELGIPMEXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDIVKNYMDAEHS 439
Query: 477 CEMLRNGAGYVWDDEMKVPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDM 534
M +NG + D +L ++ D ++++ K + N GG W+ D
Sbjct: 440 LSMGKNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQ 499
Query: 535 DDFTGTVCGGDVKYPLIGAMREELNGIPRAN 565
D CG L A RE L + +N
Sbjct: 500 D------CG-----LLANAAREGLGYVADSN 519
>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPF-LRQRNFD 145
GL E + KL +IGGWS + F ++++ R+ F+ S V F +R F
Sbjct: 197 GLRELQXKAHAMGHKLDLAFSIGGWSL-SSYFSALAENPDERRVFVASVVDFFVRFPMFS 255
Query: 146 GLDIDWEYPAGTDDK---------KNYVLLLKELREAFEAEAQEVKKPRLLLTAA---VP 193
+DIDWEYP G D+ +NYVLL+KELR A ++ + + + +
Sbjct: 256 CVDIDWEYPGGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAX 315
Query: 194 VGPDNIKGGYDVPAVAGYLDFINLMAYDFHGK-WESQVGHNAPLRSPSSDSEWQLREAFE 252
+ NI VA LD I LM+YDF G W +GH+ L SP E +L +
Sbjct: 316 LKXSNID-----QLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFD-LS 369
Query: 253 AEA 255
AEA
Sbjct: 370 AEA 372
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 18/151 (11%)
Query: 422 EYTISKEKLMIGMPTYGRSFTLVDPT--KFDIGAPASG---GGEPGKYTAEAGFMSYYEV 476
E I EK+ +G YGRS D T ++ PA G G P + +M
Sbjct: 380 ELGIPMEKIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDIVXNYMDAEHS 439
Query: 477 CEMLRNGAGYVWDDEMKVPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDM 534
M +NG + D +L ++ D +++ K + N GG W+ D
Sbjct: 440 LSMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVXQKGEYAAKNKLGGVFSWSGDQ 499
Query: 535 DDFTGTVCGGDVKYPLIGAMREELNGIPRAN 565
D CG L A RE L + +N
Sbjct: 500 D------CG-----LLANAAREGLGYVADSN 519
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 285 VAGYLDFINLMAYDFHGK-WESQVGHNAPLRSPSSDSEWRK-QLSVENAAN-MWVRLGAP 341
VA LD I LM+YDF G W +GH+ L SP E LS E A + + LG P
Sbjct: 325 VANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIP 384
Query: 342 KEQ 344
E+
Sbjct: 385 MEK 387
>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPF-LRQRNFD 145
GL E ++ KL +IGGWS + F ++++ R+ F+ S V F +R F
Sbjct: 197 GLRELQKKAHAMGHKLDLAFSIGGWSL-SSYFSALAENPDERRVFVASVVDFFVRFPMFS 255
Query: 146 GLDIDWEYPAGTDDK---------KNYVLLLKELREAFEAEAQEVKKPRLLLTAA---VP 193
+DIDWEYP G D+ +NYVLL+ ELR A ++ + + + +
Sbjct: 256 CVDIDWEYPGGGGDEGNISSDXDGENYVLLIXELRSALDSRFGYSNRXEISIACSGVXAX 315
Query: 194 VGPDNIKGGYDVPAVAGYLDFINLMAYDFHGK-WESQVGHNAPLRSPSSDSEWQLREAFE 252
+ NI VA LD I LM+YDF G W +GH+ L SP E +L +
Sbjct: 316 LKXSNID-----QLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFD-LS 369
Query: 253 AEA 255
AEA
Sbjct: 370 AEA 372
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 285 VAGYLDFINLMAYDFHGK-WESQVGHNAPLRSPSSDSEWRK-QLSVENAAN-MWVRLGAP 341
VA LD I LM+YDF G W +GH+ L SP E LS E A + + LG P
Sbjct: 325 VANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIP 384
Query: 342 KE 343
E
Sbjct: 385 ME 386
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 56/151 (37%), Gaps = 18/151 (11%)
Query: 422 EYTISKEKLMIGMPTYGRSFTLVDPT--KFDIGAPASG---GGEPGKYTAEAGFMSYYEV 476
E I E + +G YGRS D T ++ PA G G P + +M
Sbjct: 380 ELGIPMEXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDIVKNYMDAEHS 439
Query: 477 CEMLRNGAGYVWDDEMKVPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDM 534
M +NG + D +L ++ D ++++ K + N GG W+ D
Sbjct: 440 LSMGKNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQ 499
Query: 535 DDFTGTVCGGDVKYPLIGAMREELNGIPRAN 565
D CG L A RE L + +N
Sbjct: 500 D------CG-----LLANAAREGLGYVADSN 519
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 118/262 (45%), Gaps = 42/262 (16%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDL--CTHIIFAFGWLKKGKLSSFESNDETKDGKVG 87
+VCYY + S R +GK D+E L C+H+++ + L+ L ++ N E D
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMN-ENLDIYKH 62
Query: 88 LYERIEQLKKANPKLKTLLAIGGWSF----GTQKFKEMSKSRYSRQT-FIYSAVPFLRQR 142
+ + LK+ P LK LL++GG K+ ++ + RQ FI SA ++
Sbjct: 63 QFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTY 122
Query: 143 NFDGLDIDWEYPAGTDDKKNYVLLL-----KEL--------------REAFEAEAQEVKK 183
FDGLD+ +++P K + L L K+L +E F A ++VK
Sbjct: 123 GFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKD 182
Query: 184 PR-----LLLTAAVPVGPDNIKGG--YDVPAVAGYLDFINLMAYDFH--GKWESQVGHNA 234
LL +P N+ +D+PA+ G +DF+NL +DF + + ++A
Sbjct: 183 SLRADGFLLSLTVLP----NVNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSA 238
Query: 235 PLRSP--SSDSEWQLREAFEAE 254
P+ P S D L F+ E
Sbjct: 239 PIYHPDGSKDRLAHLNADFQVE 260
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 100/301 (33%), Gaps = 107/301 (35%)
Query: 280 YDVPAVAGYLDFINLMAYDFH--GKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVR 337
+D+PA+ G +DF+NL +DF + + ++AP+ P + L+ + W+
Sbjct: 205 FDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVEYWLS 264
Query: 338 LGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYG 397
G P K+ +G+ TYG
Sbjct: 265 QG--------------------------------------------FPSNKINLGVATYG 280
Query: 398 RTFTLTNPAVFKVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASG 457
+ LT K+ + G+P P +
Sbjct: 281 NAWKLT-----------------------KDSGLEGVPV----------------VPETS 301
Query: 458 GGEP-GKYTAEAGFMSYYEVCEMLRNGAGYVW----------DDEMK----VPYLVHGDQ 502
G P G + + G +SY E+C L N D K + Y Q
Sbjct: 302 GPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQ 361
Query: 503 -----WVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREE 557
WV +DD S K + + GG ++ + DDF G C GD KYP++ A++
Sbjct: 362 ITEGIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQ-CSGD-KYPILRAIKYR 419
Query: 558 L 558
L
Sbjct: 420 L 420
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 22/166 (13%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFL-RQRNFD 145
GL L +A+ +L+ L+IGGWS + F E++K R F+ F R F
Sbjct: 195 GLLGGFRLLHEADKELEFSLSIGGWSM-SGLFSEIAKDEILRTNFVEGIKDFFQRFPMFS 253
Query: 146 GLDIDWEYPAGT--------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPD 197
LDIDWEYP DD N+ +L++++ +A + + + + ++A P D
Sbjct: 254 HLDIDWEYPGSIGAGNPNSPDDGANFAILIQQITDAKISNLKGIS----IASSADPAKID 309
Query: 198 NIKGGYDVPAV--AGYLDFINLMAYDFHGKWESQVGHNAPL-RSPS 240
++PA+ AG + INLM YDF + ++ H+ + R PS
Sbjct: 310 ----AANIPALMDAG-VTGINLMTYDFFTLGDGKLSHHTNIYRDPS 350
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 481 RNGAGYVWDDEMKVPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
RNG V D K YL ++ D +S+R K ++KD G GG +W+ D D+
Sbjct: 439 RNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 496
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 22/166 (13%)
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFL-RQRNFD 145
GL L +A+ +L+ L+IGGWS + F E++K R F+ F R F
Sbjct: 223 GLLGGFRLLHEADKELEFSLSIGGWSM-SGLFSEIAKDEILRTNFVEGIKDFFQRFPMFS 281
Query: 146 GLDIDWEYPAGT--------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPD 197
LDIDWEYP DD N+ +L++++ +A + + + + ++A P D
Sbjct: 282 HLDIDWEYPGSIGAGNPNSPDDGANFAILIQQITDAKISNLKGIS----IASSADPAKID 337
Query: 198 NIKGGYDVPAV--AGYLDFINLMAYDFHGKWESQVGHNAPL-RSPS 240
++PA+ AG + INLM YDF + ++ H+ + R PS
Sbjct: 338 ----AANIPALMDAG-VTGINLMTYDFFTLGDGKLSHHTNIYRDPS 378
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 481 RNGAGYVWDDEMKVPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
RNG V D K YL ++ D +S+R K ++KD G GG +W+ D D+
Sbjct: 467 RNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 524
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 21/173 (12%)
Query: 96 KKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPA 155
++ P L T+ + F T+ ++ + +R + + + R + G+ ID+E +
Sbjct: 65 RRVTP-LATITNLTSGGFSTEIVHQVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFEQVS 123
Query: 156 GTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPV-GPDNIK--GGYDVPAVAGYL 212
D + + L++LR+ +A +LT AVP DNI GYD + +
Sbjct: 124 AAD-RDLFTGFLRQLRDRLQAGG-------YVLTIAVPAKTSDNIPWLRGYDYGGIGAVV 175
Query: 213 DFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRLLL 265
+++ +MAYD+H S+ G AP+ ++R E +V ++++
Sbjct: 176 NYMFIMAYDWHHA-GSEPGPVAPIT--------EIRRTIEFTIAQVPSRKIII 219
>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
pdb|3SIM|B Chain B, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
Length = 275
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 90 ERIEQLKKANPKLKTLLAIGGWSFG--TQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGL 147
++I +K ++P ++ +++GG S G T +F+ S + + S +++ N DG+
Sbjct: 64 DQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNA-VTSLTRIIQRYNLDGI 122
Query: 148 DIDWEYPAGTD 158
DID+E+ TD
Sbjct: 123 DIDYEHFQNTD 133
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 90 ERIEQLKKANPK--LKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGL 147
+RIE +++ K +K L+++ S G +F +R+ I + F ++ DG
Sbjct: 52 KRIESVRETAHKHNVKILISLAKNSPG--EFTTAINDPKARKELIQQIIAFTKEYKLDGF 109
Query: 148 DIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPA 207
DID+E D KN+ LL R + A K+ L T AV N ++
Sbjct: 110 DIDYEEYDNWD--KNFPSLLVFARGLYLA-----KEKNXLXTCAVNSRWLNYGTEWE--- 159
Query: 208 VAGYLDFINLMAYD 221
Y D+INL +YD
Sbjct: 160 --QYFDYINLXSYD 171
>pdb|3IAN|A Chain A, Crystal Structure Of A Chitinase From Lactococcus Lactis
Subsp. Lactis
Length = 321
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 10/140 (7%)
Query: 94 QLKKANPKLKT-LLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWE 152
++ K N + K+ L+A+GG E+ KS+ S F+ + + FDGLDID E
Sbjct: 71 EISKLNAEGKSVLIALGG----ADAHIELKKSQESD--FVNEIIRLVDTYGFDGLDIDLE 124
Query: 153 YPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYL 212
A + N ++ L++ + ++ K + + P + K + + Y
Sbjct: 125 -QAAIEAADNQTVIPSALKKVKDHYRKDGKNFMITMAPEFPYLTSSGKYAPYINNLDSYY 183
Query: 213 DFINLMAYDFHGK--WESQV 230
DFIN Y+ G W+S +
Sbjct: 184 DFINPQYYNQGGDGFWDSDL 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,397,464
Number of Sequences: 62578
Number of extensions: 1052527
Number of successful extensions: 2568
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2060
Number of HSP's gapped (non-prelim): 257
length of query: 743
length of database: 14,973,337
effective HSP length: 106
effective length of query: 637
effective length of database: 8,340,069
effective search space: 5312623953
effective search space used: 5312623953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)