Query psy14882
Match_columns 743
No_of_seqs 317 out of 1998
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 23:13:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02872 GH18_chitolectin_chito 100.0 2E-69 4.4E-74 592.4 36.2 357 30-558 1-362 (362)
2 cd02873 GH18_IDGF The IDGF's ( 100.0 3.8E-67 8.2E-72 584.2 36.4 359 29-558 1-413 (413)
3 COG3325 ChiA Chitinase [Carboh 100.0 1.2E-66 2.6E-71 560.9 24.9 367 25-560 35-438 (441)
4 cd02879 GH18_plant_chitinase_c 100.0 3.4E-60 7.4E-65 507.9 33.1 289 28-539 3-297 (299)
5 KOG2806|consensus 100.0 2.2E-60 4.8E-65 532.0 31.9 363 28-559 52-421 (432)
6 smart00636 Glyco_18 Glycosyl h 100.0 8.1E-60 1.8E-64 510.5 33.8 330 29-535 1-334 (334)
7 cd02878 GH18_zymocin_alpha Zym 100.0 4.1E-60 8.8E-65 516.7 31.3 327 29-535 1-345 (345)
8 cd06548 GH18_chitinase The GH1 100.0 2.6E-59 5.6E-64 505.8 30.9 296 30-535 1-322 (322)
9 PF00704 Glyco_hydro_18: Glyco 100.0 1.6E-53 3.5E-58 460.0 29.1 336 28-535 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 1.6E-49 3.4E-54 428.7 27.4 291 29-536 4-311 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 7.5E-47 1.6E-51 414.2 33.4 302 25-541 33-345 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 2.7E-46 5.8E-51 402.3 28.2 292 29-538 3-308 (313)
13 cd06545 GH18_3CO4_chitinase Th 100.0 2.7E-42 5.8E-47 361.2 25.4 142 30-195 1-142 (253)
14 cd06549 GH18_trifunctional GH1 100.0 6.8E-42 1.5E-46 366.5 25.3 289 29-538 1-296 (298)
15 cd00598 GH18_chitinase-like Th 100.0 1.7E-33 3.6E-38 284.3 20.6 175 30-221 1-177 (210)
16 cd06546 GH18_CTS3_chitinase GH 100.0 7.4E-31 1.6E-35 275.7 25.7 151 29-194 1-152 (256)
17 cd06544 GH18_narbonin Narbonin 100.0 2.5E-29 5.5E-34 263.3 22.2 166 47-225 13-185 (253)
18 COG3858 Predicted glycosyl hyd 100.0 9.3E-29 2E-33 267.1 20.0 244 94-539 155-414 (423)
19 cd02871 GH18_chitinase_D-like 100.0 5.5E-28 1.2E-32 260.8 25.2 150 28-194 1-157 (312)
20 KOG2091|consensus 99.9 1.2E-23 2.6E-28 218.6 19.5 300 25-534 76-383 (392)
21 cd06542 GH18_EndoS-like Endo-b 99.9 1E-21 2.3E-26 205.7 17.8 172 29-223 2-179 (255)
22 cd06543 GH18_PF-ChiA-like PF-C 99.8 3E-19 6.4E-24 191.2 21.7 154 54-225 23-184 (294)
23 cd02877 GH18_hevamine_XipI_cla 99.8 5.6E-18 1.2E-22 180.3 21.5 150 55-222 23-190 (280)
24 COG3469 Chitinase [Carbohydrat 99.5 4.7E-13 1E-17 136.6 17.9 183 26-225 24-215 (332)
25 cd02878 GH18_zymocin_alpha Zym 99.1 3.9E-10 8.4E-15 124.0 9.8 133 261-478 150-282 (345)
26 KOG2806|consensus 99.1 1.2E-10 2.6E-15 131.5 5.6 46 243-288 187-233 (432)
27 cd02872 GH18_chitolectin_chito 98.8 4.2E-09 9.1E-14 116.1 7.5 22 425-446 231-252 (362)
28 cd02875 GH18_chitobiase Chitob 98.8 3.8E-09 8.2E-14 116.8 4.5 43 261-303 150-193 (358)
29 smart00636 Glyco_18 Glycosyl h 98.7 1.8E-08 3.8E-13 109.8 7.4 21 425-445 224-244 (334)
30 cd02873 GH18_IDGF The IDGF's ( 98.7 3E-08 6.6E-13 111.6 8.9 54 248-302 168-225 (413)
31 cd02879 GH18_plant_chitinase_c 98.7 1.5E-08 3.4E-13 109.2 5.6 31 245-275 133-163 (299)
32 cd06549 GH18_trifunctional GH1 98.3 2.9E-07 6.2E-12 99.4 4.0 46 252-301 128-173 (298)
33 KOG4701|consensus 98.3 1.7E-05 3.6E-10 85.9 17.1 113 90-221 94-217 (568)
34 cd02876 GH18_SI-CLP Stabilin-1 98.2 1E-06 2.2E-11 95.9 5.2 20 425-444 217-236 (318)
35 cd06548 GH18_chitinase The GH1 98.2 1.2E-06 2.5E-11 95.5 5.6 15 425-439 250-264 (322)
36 cd02874 GH18_CFLE_spore_hydrol 98.2 1.7E-06 3.7E-11 93.7 5.8 19 425-443 206-224 (313)
37 cd06547 GH85_ENGase Endo-beta- 98.0 2.5E-05 5.4E-10 86.0 9.1 83 93-177 53-138 (339)
38 cd06545 GH18_3CO4_chitinase Th 97.8 2.3E-05 5.1E-10 82.5 4.5 81 260-400 130-212 (253)
39 COG3325 ChiA Chitinase [Carboh 97.7 2.6E-05 5.6E-10 86.5 4.4 80 122-241 190-272 (441)
40 PF00704 Glyco_hydro_18: Glyco 97.7 1.6E-05 3.4E-10 86.4 2.4 23 425-447 232-254 (343)
41 COG3858 Predicted glycosyl hyd 97.3 0.00024 5.3E-09 78.7 4.3 87 259-444 238-329 (423)
42 PF03644 Glyco_hydro_85: Glyco 96.9 0.0014 2.9E-08 71.6 6.2 83 92-176 48-133 (311)
43 PF02638 DUF187: Glycosyl hydr 96.5 0.013 2.7E-07 64.2 9.6 94 124-222 135-263 (311)
44 PF11340 DUF3142: Protein of u 95.3 0.048 1.1E-06 54.8 7.1 84 125-220 23-107 (181)
45 cd06543 GH18_PF-ChiA-like PF-C 94.9 0.017 3.7E-07 62.6 2.8 55 246-302 125-184 (294)
46 PF13200 DUF4015: Putative gly 94.7 0.56 1.2E-05 51.5 13.8 92 125-224 120-230 (316)
47 cd00598 GH18_chitinase-like Th 92.1 0.099 2.1E-06 52.8 2.7 55 244-298 123-177 (210)
48 cd06542 GH18_EndoS-like Endo-b 88.9 0.56 1.2E-05 49.3 5.0 52 246-301 129-180 (255)
49 cd02871 GH18_chitinase_D-like 87.0 0.52 1.1E-05 51.5 3.4 58 245-303 132-199 (312)
50 TIGR01370 cysRS possible cyste 86.2 5.2 0.00011 44.1 10.5 85 90-177 85-203 (315)
51 cd06544 GH18_narbonin Narbonin 85.1 0.68 1.5E-05 49.3 3.0 43 261-304 145-187 (253)
52 PRK12568 glycogen branching en 84.2 12 0.00027 45.6 13.4 56 122-177 380-452 (730)
53 KOG2331|consensus 81.0 4.2 9.2E-05 45.9 7.1 77 101-177 124-201 (526)
54 cd06546 GH18_CTS3_chitinase GH 80.5 1.3 2.8E-05 47.1 3.0 43 260-302 141-191 (256)
55 cd02877 GH18_hevamine_XipI_cla 80.2 1.3 2.8E-05 47.9 2.9 39 260-301 153-192 (280)
56 COG1649 Uncharacterized protei 79.0 5.5 0.00012 45.4 7.4 94 124-222 180-309 (418)
57 PRK14706 glycogen branching en 78.6 27 0.00059 42.2 13.5 55 123-177 279-348 (639)
58 PRK12313 glycogen branching en 77.2 25 0.00053 42.4 12.7 54 123-177 282-352 (633)
59 TIGR01515 branching_enzym alph 74.6 56 0.0012 39.3 14.7 55 123-177 268-339 (613)
60 TIGR02103 pullul_strch alpha-1 74.5 19 0.00042 45.0 11.0 83 86-177 404-516 (898)
61 TIGR02402 trehalose_TreZ malto 73.4 38 0.00082 40.1 12.7 49 126-177 220-268 (542)
62 PRK05402 glycogen branching en 73.3 38 0.00083 41.5 13.1 56 122-177 376-448 (726)
63 PF14883 GHL13: Hypothetical g 72.8 47 0.001 36.2 12.0 160 56-223 30-229 (294)
64 PRK14705 glycogen branching en 72.0 43 0.00093 43.4 13.4 55 123-177 877-948 (1224)
65 PLN02960 alpha-amylase 71.9 40 0.00086 42.1 12.6 54 123-177 529-601 (897)
66 TIGR02104 pulA_typeI pullulana 68.7 39 0.00085 40.5 11.6 47 124-177 293-339 (605)
67 COG1306 Uncharacterized conser 68.1 9.3 0.0002 41.6 5.5 85 129-223 195-299 (400)
68 PLN02447 1,4-alpha-glucan-bran 66.4 72 0.0016 39.4 13.2 53 124-177 364-436 (758)
69 cd02810 DHOD_DHPD_FMN Dihydroo 66.0 39 0.00085 36.1 10.0 72 87-174 84-161 (289)
70 PLN02877 alpha-amylase/limit d 62.6 52 0.0011 41.6 11.2 46 125-177 534-579 (970)
71 PF13199 Glyco_hydro_66: Glyco 61.7 14 0.00031 43.8 6.0 53 123-175 238-300 (559)
72 cd02930 DCR_FMN 2,4-dienoyl-Co 61.4 74 0.0016 35.4 11.3 24 127-151 135-158 (353)
73 PF14871 GHL6: Hypothetical gl 55.6 41 0.00088 32.4 7.0 31 121-151 102-132 (132)
74 TIGR02102 pullulan_Gpos pullul 55.5 63 0.0014 41.6 10.4 83 86-177 555-662 (1111)
75 cd04740 DHOD_1B_like Dihydroor 54.7 76 0.0016 34.1 9.8 71 87-174 76-153 (296)
76 PLN02495 oxidoreductase, actin 54.1 46 0.00099 37.8 8.2 56 85-156 97-153 (385)
77 cd04733 OYE_like_2_FMN Old yel 54.0 3.4E+02 0.0074 29.9 15.3 87 127-219 147-257 (338)
78 PRK10785 maltodextrin glucosid 51.3 1.5E+02 0.0032 35.7 12.3 55 123-177 303-363 (598)
79 PRK07259 dihydroorotate dehydr 50.0 97 0.0021 33.5 9.7 70 88-174 79-156 (301)
80 cd04734 OYE_like_3_FMN Old yel 47.8 4.1E+02 0.0088 29.6 14.3 87 126-218 138-249 (343)
81 cd04735 OYE_like_4_FMN Old yel 47.6 3.4E+02 0.0075 30.2 13.8 90 127-222 142-259 (353)
82 PF14587 Glyco_hydr_30_2: O-Gl 44.6 62 0.0013 36.7 7.2 89 87-178 105-217 (384)
83 TIGR02100 glgX_debranch glycog 43.4 1E+02 0.0022 37.8 9.3 49 124-172 315-365 (688)
84 PRK08318 dihydropyrimidine deh 41.5 1.6E+02 0.0035 33.5 10.2 72 88-174 86-167 (420)
85 cd04747 OYE_like_5_FMN Old yel 40.4 1.8E+02 0.0039 32.8 10.1 63 127-194 142-220 (361)
86 KOG2091|consensus 38.5 13 0.00028 40.8 0.7 33 203-237 244-276 (392)
87 cd02940 DHPD_FMN Dihydropyrimi 38.4 2.4E+02 0.0052 30.6 10.5 72 88-174 86-167 (299)
88 PRK03705 glycogen debranching 38.3 1E+02 0.0022 37.5 8.3 30 123-152 309-338 (658)
89 TIGR02456 treS_nterm trehalose 37.9 5E+02 0.011 30.7 13.8 53 124-177 172-230 (539)
90 PRK13523 NADPH dehydrogenase N 37.8 5.9E+02 0.013 28.3 13.6 85 127-219 140-248 (337)
91 PF07592 DDE_Tnp_ISAZ013: Rhod 35.0 3.2E+02 0.007 30.3 10.6 113 22-144 95-215 (311)
92 PF00724 Oxidored_FMN: NADH:fl 34.7 4.1E+02 0.0089 29.4 11.8 64 127-195 147-226 (341)
93 PRK02506 dihydroorotate dehydr 33.7 2.4E+02 0.0053 30.8 9.7 73 86-174 77-156 (310)
94 PRK07565 dihydroorotate dehydr 33.5 2.3E+02 0.0049 31.3 9.5 71 87-174 88-164 (334)
95 cd04741 DHOD_1A_like Dihydroor 33.5 2.2E+02 0.0048 30.9 9.3 74 85-174 73-156 (294)
96 COG4724 Endo-beta-N-acetylgluc 33.2 85 0.0018 35.6 5.9 75 94-172 134-217 (553)
97 PF02057 Glyco_hydro_59: Glyco 33.0 69 0.0015 38.8 5.5 82 89-177 115-200 (669)
98 PF14885 GHL15: Hypothetical g 31.5 56 0.0012 28.9 3.4 35 117-151 40-75 (79)
99 PF02065 Melibiase: Melibiase; 31.0 2.3E+02 0.005 32.4 9.1 64 122-194 162-236 (394)
100 cd02932 OYE_YqiM_FMN Old yello 31.0 75 0.0016 35.1 5.2 24 127-151 152-175 (336)
101 PRK14581 hmsF outer membrane N 30.7 3.2E+02 0.0068 33.6 10.6 161 56-223 347-575 (672)
102 PF10566 Glyco_hydro_97: Glyco 29.2 1.9E+02 0.0042 31.3 7.7 94 88-203 75-168 (273)
103 cd04739 DHOD_like Dihydroorota 28.5 2.6E+02 0.0056 30.8 8.9 71 87-174 86-162 (325)
104 PRK10550 tRNA-dihydrouridine s 28.1 87 0.0019 34.4 5.0 93 101-217 62-167 (312)
105 PRK05286 dihydroorotate dehydr 26.9 3E+02 0.0064 30.6 9.0 75 88-175 127-206 (344)
106 TIGR03234 OH-pyruv-isom hydrox 26.6 1.2E+02 0.0026 31.5 5.6 36 132-177 16-51 (254)
107 PF07745 Glyco_hydro_53: Glyco 26.6 2E+02 0.0043 32.2 7.4 157 89-270 61-240 (332)
108 PLN03244 alpha-amylase; Provis 26.1 1.8E+02 0.0038 36.3 7.4 27 124-150 505-531 (872)
109 cd02803 OYE_like_FMN_family Ol 25.1 2E+02 0.0044 31.2 7.3 24 128-152 140-163 (327)
110 PRK01060 endonuclease IV; Prov 24.5 1.1E+02 0.0024 32.3 4.9 46 132-177 14-59 (281)
111 cd06589 GH31 The enzymes of gl 24.1 3.4E+02 0.0074 28.8 8.6 51 88-155 68-118 (265)
112 PF01120 Alpha_L_fucos: Alpha- 23.0 6.3E+02 0.014 28.0 10.7 86 85-172 136-234 (346)
113 PRK08446 coproporphyrinogen II 22.9 2.5E+02 0.0055 31.1 7.5 75 90-169 99-173 (350)
114 PF14488 DUF4434: Domain of un 22.8 7.6E+02 0.017 24.6 13.8 82 87-177 65-151 (166)
115 smart00812 Alpha_L_fucos Alpha 22.6 3.3E+02 0.0071 31.0 8.4 71 85-156 126-206 (384)
116 cd06592 GH31_glucosidase_KIAA1 21.8 4.6E+02 0.0099 28.5 9.1 32 123-154 135-166 (303)
117 cd02801 DUS_like_FMN Dihydrour 21.6 3E+02 0.0065 28.0 7.4 61 98-174 51-122 (231)
118 cd04738 DHOD_2_like Dihydrooro 21.3 5.8E+02 0.013 28.1 9.9 66 100-175 127-197 (327)
119 COG1902 NemA NADH:flavin oxido 21.0 6.9E+02 0.015 28.2 10.5 66 127-197 147-228 (363)
120 smart00633 Glyco_10 Glycosyl h 21.0 6E+02 0.013 26.7 9.6 53 90-152 107-160 (254)
121 cd06600 GH31_MGAM-like This fa 20.8 6.1E+02 0.013 27.8 9.9 33 123-155 130-162 (317)
122 cd06591 GH31_xylosidase_XylS X 20.7 4.2E+02 0.009 29.1 8.6 31 124-154 130-160 (319)
123 PRK11572 copper homeostasis pr 20.3 3.7E+02 0.008 28.9 7.7 65 92-168 43-111 (248)
124 cd06602 GH31_MGAM_SI_GAA This 20.2 2.5E+02 0.0054 31.1 6.8 33 123-155 135-167 (339)
125 TIGR00539 hemN_rel putative ox 20.2 3.1E+02 0.0067 30.5 7.5 77 90-171 101-177 (360)
No 1
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=2e-69 Score=592.41 Aligned_cols=357 Identities=58% Similarity=1.076 Sum_probs=299.4
Q ss_pred EEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCe-eeccCCCccccchhhHHHHHHHHHHhCCCcEEEEEE
Q psy14882 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKL-SSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAI 108 (743)
Q Consensus 30 VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~-~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVllSI 108 (743)
|+|||++|+.++++.+.|.+++||+++||||+|+|+.+++.+. ...+. ..+...+.++++.+||++||++|||+||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~~---~~d~~~~~~~~~~~lk~~~p~lkvlisi 77 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDE---WNDIDLGLYERFNALKEKNPNLKTLLAI 77 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecCc---hhhhhhhHHHHHHHHHhhCCCceEEEEE
Confidence 6899999999998888999999999999999999999988643 33322 1223456789999999999999999999
Q ss_pred cCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC----CccHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy14882 109 GGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG----TDDKKNYVLLLKELREAFEAEAQEVKKP 184 (743)
Q Consensus 109 GGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~----~~dk~nfv~LLkeLR~~L~~~~~~~~~~ 184 (743)
|||+.++..|+.++++++.|++||++|+++|++|+|||||||||+|.. ++++++|+.||++||++|++.. +
T Consensus 78 GG~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~-----~ 152 (362)
T cd02872 78 GGWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEA-----P 152 (362)
T ss_pred cCCCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhC-----c
Confidence 999987778999999999999999999999999999999999999974 4789999999999999998752 4
Q ss_pred cEEEEEeccCCCCCCCCCCCccccccccceEEeeeccCCCCCCcccccCCCCCCCCCchHHHHHHHHHHHHHhcccccce
Q psy14882 185 RLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRLL 264 (743)
Q Consensus 185 ~~lLSiAvpa~~~~~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 264 (743)
+++||+++|+.+..+...||+++|.++
T Consensus 153 ~~~ls~av~~~~~~~~~~~d~~~l~~~----------------------------------------------------- 179 (362)
T cd02872 153 RLLLTAAVSAGKETIDAAYDIPEISKY----------------------------------------------------- 179 (362)
T ss_pred CeEEEEEecCChHHHhhcCCHHHHhhh-----------------------------------------------------
Confidence 799999999865444334555555554
Q ss_pred eeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCccc
Q psy14882 265 LTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQ 344 (743)
Q Consensus 265 lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~~~~~v~~av~~w~~~G~p~~~ 344 (743)
+||||+||||+||.|...+||+|||+....+......++++.+|+.|++.|+|
T Consensus 180 ------------------------vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp--- 232 (362)
T cd02872 180 ------------------------LDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAP--- 232 (362)
T ss_pred ------------------------cceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCC---
Confidence 45555555555555655788888888766554334567899999999999988
Q ss_pred ccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCCCCCCCCCCccc
Q psy14882 345 ASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYT 424 (743)
Q Consensus 345 ~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p~~g~g~~g~~~ 424 (743)
++||+||||+|||.|++.++.+.+
T Consensus 233 -----------------------------------------~~KlvlGlp~YG~~~~~~~~~~~~--------------- 256 (362)
T cd02872 233 -----------------------------------------PEKLVLGIPTYGRSFTLASPSNTG--------------- 256 (362)
T ss_pred -----------------------------------------HHHeEeccccccceeeecCCccCC---------------
Confidence 999999999999999987654332
Q ss_pred ccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccccHHHHHHHhhCCceEEecCCCceeEEEeCCEEE
Q psy14882 425 ISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGYVWDDEMKVPYLVHGDQWV 504 (743)
Q Consensus 425 ~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l~Y~ei~~~~~~g~~~~wD~~a~~py~~~~~~~I 504 (743)
+|++..+.+.+|.++.+.|.++|.|||+.+.+++...||+.+++||++++++||
T Consensus 257 --------------------------~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~~~~~~~~~D~~~~~~y~~~~~~~v 310 (362)
T cd02872 257 --------------------------VGAPASGPGTAGPYTREAGFLAYYEICEFLKSGWTVVWDDEQKVPYAYKGNQWV 310 (362)
T ss_pred --------------------------CCCccCCCCCCCCCcCCCccchHHHHHHhhcCCcEEEEeCCcceeEEEECCEEE
Confidence 344455556667777899999999999877668999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHHcCCceEEEEeccCCCCCCcccCCCCCcchHHHHHHHh
Q psy14882 505 GFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREEL 558 (743)
Q Consensus 505 sYDd~~Si~~K~~yak~~gLgGv~vW~L~~Dd~~g~~cg~~~~~pll~a~~~~l 558 (743)
+|||++||+.|++||+++||||+|+|+|++||+.|. ||.+ .|||+++|++.|
T Consensus 311 ~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~-cg~~-~~pLl~~i~~~~ 362 (362)
T cd02872 311 GYDDEESIALKVQYLKSKGLGGAMVWSIDLDDFRGT-CGQG-KYPLLNAINRAL 362 (362)
T ss_pred EeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCc-cCCC-CCcHHHHHHHhC
Confidence 999999999999999999999999999999999997 9875 799999999875
No 2
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=3.8e-67 Score=584.17 Aligned_cols=359 Identities=31% Similarity=0.583 Sum_probs=284.0
Q ss_pred EEEEEEeCCccccccCCCCCCCCCCCCC--ccEEEEeeEEeeCCCeeeccCCCccccchhhHHHHHHHHHHhCCCcEEEE
Q psy14882 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDL--CTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLL 106 (743)
Q Consensus 29 ~VvgYy~~W~~~~~~~~~f~~~~Ip~~~--~THIiyaFa~i~~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVll 106 (743)
+|+|||++|+.+|.+.+.|.+++||+.+ ||||+|+|+.|++.+..... .++..+...+.++++..||++||++|||+
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~lk~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKS-LNEDLDLDKSHYRAITSLKRKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEe-cCcccchhhhHHHHHHHHHhhCCCCeEEE
Confidence 5899999999999998999999999875 99999999999985422211 12222223567899999999999999999
Q ss_pred EEcCCCCC-----chhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC-------------------------
Q psy14882 107 AIGGWSFG-----TQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG------------------------- 156 (743)
Q Consensus 107 SIGGw~~s-----s~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~------------------------- 156 (743)
|||||+++ +..|+.+++++++|++||+++++||++|+|||||||||||..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 99999864 357999999999999999999999999999999999999963
Q ss_pred -----CccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCCCCCCCCCCccccccccceEEeeeccCCCCCCcccc
Q psy14882 157 -----TDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVG 231 (743)
Q Consensus 157 -----~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSiAvpa~~~~~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g 231 (743)
++|+++|+.||+|||++|++. +++|++++++.... ...||+++|+++|||||||||||||.|..
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~~l~~~-------~~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~~~~--- 228 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKNALRPD-------GLLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTPERN--- 228 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhccc-------CcEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCCCCC---
Confidence 358999999999999999864 67899988643221 12355666666666655555555554332
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHHhcccccceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCC
Q psy14882 232 HNAPLRSPSSDSEWQLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNA 311 (743)
Q Consensus 232 ~~Spl~~~~~~~~~~lr~~~~~~~~~~~~~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~a 311 (743)
...++|+|
T Consensus 229 ------------------------------------------------------------------------~~~~~~~a 236 (413)
T cd02873 229 ------------------------------------------------------------------------PEEADYTA 236 (413)
T ss_pred ------------------------------------------------------------------------CCccCcCC
Confidence 01578889
Q ss_pred CCCCCCCCccccccccHHHHHHHHHHcCCCcccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEE
Q psy14882 312 PLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLII 391 (743)
Q Consensus 312 pL~~~~~~~~~~~~~~v~~av~~w~~~G~p~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvL 391 (743)
|||..... ...++++.+|+.|++.|+| ++||+|
T Consensus 237 pL~~~~~~---~~~~~v~~~v~~~~~~gvp--------------------------------------------~~Klvl 269 (413)
T cd02873 237 PIYELYER---NPHHNVDYQVKYWLNQGTP--------------------------------------------ASKLNL 269 (413)
T ss_pred ccCCCccc---cccccHHHHHHHHHHcCCC--------------------------------------------HHHeEE
Confidence 99865421 2357899999999999988 999999
Q ss_pred eeccccccccccCCCccccCCCCCCCCCCCcccccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccc
Q psy14882 392 GMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFM 471 (743)
Q Consensus 392 Glp~YGr~w~l~~~~~~~~~~p~~g~g~~g~~~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l 471 (743)
|||||||.|++.++.... + ...+++..|++.+|+++.++|++
T Consensus 270 Gip~YGr~w~l~~~~~~~------g--------------------------------~~~~~~~~g~~~~G~~~~~~g~l 311 (413)
T cd02873 270 GIATYGRAWKLTKDSGIT------G--------------------------------VPPVLETDGPGPAGPQTKTPGLL 311 (413)
T ss_pred EEecceeeeEccCCCCCc------C--------------------------------CCCCccCCCCCCCCCCcCCCccc
Confidence 999999999987542110 0 00123445567778888999999
Q ss_pred cHHHHHHHhhC---------CceEEecCCCc-eeEEEeC-------CEEEEeCCHHHHHHHHHHHHHcCCceEEEEeccC
Q psy14882 472 SYYEVCEMLRN---------GAGYVWDDEMK-VPYLVHG-------DQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDM 534 (743)
Q Consensus 472 ~Y~ei~~~~~~---------g~~~~wD~~a~-~py~~~~-------~~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~ 534 (743)
+|.|||.++.. .+...||++.+ .||.|+. ++||+|||++||+.|++||+++||||+|+|+|++
T Consensus 312 ~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~~ 391 (413)
T cd02873 312 SWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSL 391 (413)
T ss_pred cHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeeec
Confidence 99999987653 13456888876 5899842 5799999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCcchHHHHHHHh
Q psy14882 535 DDFTGTVCGGDVKYPLIGAMREEL 558 (743)
Q Consensus 535 Dd~~g~~cg~~~~~pll~a~~~~l 558 (743)
|||+|. |+++ .+|||++|.+.|
T Consensus 392 DD~~g~-c~~~-~~pll~~i~~~~ 413 (413)
T cd02873 392 DDFRGQ-CTGD-KFPILRSAKYRL 413 (413)
T ss_pred CcCCCC-cCCC-CChHHHHHHhhC
Confidence 999997 7655 799999998764
No 3
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-66 Score=560.92 Aligned_cols=367 Identities=36% Similarity=0.625 Sum_probs=284.8
Q ss_pred CCCcEEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCe-----eeccC------------CCccccchhh
Q psy14882 25 ERLLEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKL-----SSFES------------NDETKDGKVG 87 (743)
Q Consensus 25 ~~~~~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~-----~sf~~------------~~~~~d~~~g 87 (743)
...+||++||++|+++.+ ..|.+.+||++++|||+|+|+.|+..+. +.++. .+...++.++
T Consensus 35 d~~~rvvgYY~sWs~~d~--~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G 112 (441)
T COG3325 35 DDQFKVVGYYTSWSQYDR--QDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKG 112 (441)
T ss_pred CCCceEEEEecccccCCC--cccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccc
Confidence 568899999999999988 5899999999999999999999987542 11110 1223334789
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC---------Cc
Q psy14882 88 LYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG---------TD 158 (743)
Q Consensus 88 ~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~---------~~ 158 (743)
.+..|+.||+++|++|+++|||||+.+ ..|+.++.+.+.|++|++++++||++|+|||||||||||++ ++
T Consensus 113 ~~~~L~~lk~~~~d~k~l~SIGGWs~S-~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~ 191 (441)
T COG3325 113 HFGALFDLKATYPDLKTLISIGGWSDS-GGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPK 191 (441)
T ss_pred hHHHHHHHhhhCCCceEEEeecccccC-CCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcc
Confidence 999999999999999999999999965 68999999999999999999999999999999999999985 36
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCCCCCCCCCCccccccccceEEeeeccCCCCCCcccccCCCCCC
Q psy14882 159 DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRS 238 (743)
Q Consensus 159 dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSiAvpa~~~~~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~ 238 (743)
++++|+.||++||++|++.+.|++ ++|+||+|+|+....+.
T Consensus 192 d~~ny~~Ll~eLR~~LD~a~~edg-r~Y~LTiA~~as~~~l~-------------------------------------- 232 (441)
T COG3325 192 DKANYVLLLQELRKKLDKAGVEDG-RHYQLTIAAPASKDKLE-------------------------------------- 232 (441)
T ss_pred cHHHHHHHHHHHHHHHhhcccccC-ceEEEEEecCCchhhhh--------------------------------------
Confidence 899999999999999999887764 48999999998766543
Q ss_pred CCCchHHHHHHHHHHHHHhcccccceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCC
Q psy14882 239 PSSDSEWQLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSS 318 (743)
Q Consensus 239 ~~~~~~~~lr~~~~~~~~~~~~~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~ 318 (743)
+.++.+++++|||||||||||||+|++.+|||||||+.+.
T Consensus 233 ----------------------------------------~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~Ly~~~~ 272 (441)
T COG3325 233 ----------------------------------------GLNHAEIAQYVDYINIMTYDFHGAWNETLGHHAALYGTPK 272 (441)
T ss_pred ----------------------------------------cccHHHHHHHHhhhheeeeecccccccccccccccccCCC
Confidence 2366788899999999999999999999999999999877
Q ss_pred Ccccccc-ccHHHHHHHHHHcCCCcccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeecccc
Q psy14882 319 DSEWRKQ-LSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYG 397 (743)
Q Consensus 319 ~~~~~~~-~~v~~av~~w~~~G~p~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YG 397 (743)
+++.... +.++.. +.-.+++.+++...||++|||||+||||
T Consensus 273 d~~~~~~~~~v~~~--------------------------------------~~~~~~~~~~~~~~~~~~klvlG~p~Yg 314 (441)
T COG3325 273 DPPLANGGFYVDAE--------------------------------------VDGIDWLEEGFAGDVPPSKLVLGMPFYG 314 (441)
T ss_pred CCccccCCeeEEEE--------------------------------------echhHHHHhhhccCCCCceEEeeccccc
Confidence 6542211 111111 1111466677778899999999999999
Q ss_pred ccccccCCCccc-cCCCCCCCCCCCcccccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccc--cH-
Q psy14882 398 RTFTLTNPAVFK-VNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFM--SY- 473 (743)
Q Consensus 398 r~w~l~~~~~~~-~~~p~~g~g~~g~~~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l--~Y- 473 (743)
|+|..++....+ .+.++++. +++.. ..| +++.+.+ +|
T Consensus 315 Rgw~~v~~~~~~~~~~~~q~~---------------------------~n~g~----------~~G--tw~a~n~~~~~~ 355 (441)
T COG3325 315 RGWNGVDGGSLGTCPGLYQGL---------------------------DNSGI----------PKG--TWEAGNGDKDYG 355 (441)
T ss_pred cccccccCcccCCCCCccccc---------------------------CCCCC----------CCC--cccccccCccch
Confidence 999987665421 11111111 11100 011 1222211 22
Q ss_pred --HHHHHH--hhCCceEEecCCCceeEEEeC--CEEEEeCCHHHHHHHHHHHHHcCCceEEEEeccCCCCCCcccCCCCC
Q psy14882 474 --YEVCEM--LRNGAGYVWDDEMKVPYLVHG--DQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVK 547 (743)
Q Consensus 474 --~ei~~~--~~~g~~~~wD~~a~~py~~~~--~~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~Dd~~g~~cg~~~~ 547 (743)
..+-.. -.+++++.||+++++||+|+. +.||+|||++||++|++||++++|||+|+|++++|- ++
T Consensus 356 ~~~~l~~n~~~~~g~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD~-n~-------- 426 (441)
T COG3325 356 KAYDLDANNAGKNGYERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGDE-NG-------- 426 (441)
T ss_pred hhccccccccCCCCeeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCCc-ch--------
Confidence 122111 146789999999999999985 789999999999999999999999999999999992 22
Q ss_pred cchHHHHHHHhCC
Q psy14882 548 YPLIGAMREELNG 560 (743)
Q Consensus 548 ~pll~a~~~~l~~ 560 (743)
-|++||++.|..
T Consensus 427 -~llna~~~~l~~ 438 (441)
T COG3325 427 -VLLNAVNEGLGF 438 (441)
T ss_pred -hHHHHhhcccCC
Confidence 399999999864
No 4
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=3.4e-60 Score=507.89 Aligned_cols=289 Identities=36% Similarity=0.678 Sum_probs=239.2
Q ss_pred cEEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCC-eeeccCCCccccchhhHHHHHHHHHHhCCCcEEEE
Q psy14882 28 LEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGK-LSSFESNDETKDGKVGLYERIEQLKKANPKLKTLL 106 (743)
Q Consensus 28 ~~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~-~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVll 106 (743)
-+++|||++|+ ..|.+++||+++||||+|+|+.+++++ .+.....+ ...+.+.+..+|+++|++|+||
T Consensus 3 ~~~~~Y~~~w~------~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~-----~~~~~~~~~~~k~~~~~lkvli 71 (299)
T cd02879 3 IVKGGYWPAWS------EEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSD-----ESEFSTFTETVKRKNPSVKTLL 71 (299)
T ss_pred eEEEEEECCCC------CCCChhHCCcccCCEEEEEEEEecCCCCEEeecccc-----HHHHHHHHHHHHHhCCCCeEEE
Confidence 47899999998 269999999999999999999998754 23222111 1222333458899999999999
Q ss_pred EEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHHHhhcCCCcE
Q psy14882 107 AIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRL 186 (743)
Q Consensus 107 SIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~ 186 (743)
|||||+.+++.|+.++++++.|++||++|+++|++|+|||||||||||..++|+++|+.||++||++|++++++.++.++
T Consensus 72 siGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~ 151 (299)
T cd02879 72 SIGGGGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPL 151 (299)
T ss_pred EEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcE
Confidence 99999977779999999999999999999999999999999999999988889999999999999999987766666689
Q ss_pred EEEEeccCCCCC----CCCCCCccccccccceEEeeeccCCCCCCcccccCCCCCCCCCchHHHHHHHHHHHHHhccccc
Q psy14882 187 LLTAAVPVGPDN----IKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPR 262 (743)
Q Consensus 187 lLSiAvpa~~~~----~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~~~~~~lr~~~~~~~~~~~~~~ 262 (743)
+||+++|+.+.. ....||++
T Consensus 152 ~ls~av~~~~~~~~~~~~~~yd~~-------------------------------------------------------- 175 (299)
T cd02879 152 LLTAAVYFSPILFLSDDSVSYPIE-------------------------------------------------------- 175 (299)
T ss_pred EEEeecccchhhccccccccCCHH--------------------------------------------------------
Confidence 999999876543 12234444
Q ss_pred ceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCC-CCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCC
Q psy14882 263 LLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES-QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAP 341 (743)
Q Consensus 263 ~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~-~tGh~apL~~~~~~~~~~~~~~v~~av~~w~~~G~p 341 (743)
++.+++||||+|||||||.|+. .+||+||||.+.. .++++.+|+.|++.|+|
T Consensus 176 ---------------------~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~------~~~~~~~v~~~~~~g~p 228 (299)
T cd02879 176 ---------------------AINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNS------NVSTDYGIKSWIKAGVP 228 (299)
T ss_pred ---------------------HHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCC------CCCHHHHHHHHHHcCCC
Confidence 4455555555555555555554 4688899986542 46899999999999988
Q ss_pred cccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCCCCCCCCCC
Q psy14882 342 KEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAG 421 (743)
Q Consensus 342 ~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p~~g~g~~g 421 (743)
++||+||||+|||.|++
T Consensus 229 --------------------------------------------~~KlvlGvp~YGr~~~~------------------- 245 (299)
T cd02879 229 --------------------------------------------AKKLVLGLPLYGRAWTL------------------- 245 (299)
T ss_pred --------------------------------------------HHHEEEEeccccccccc-------------------
Confidence 99999999999998851
Q ss_pred cccccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccccHHHHHHHhhCCceEEecCCCceeEEEeCC
Q psy14882 422 EYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGYVWDDEMKVPYLVHGD 501 (743)
Q Consensus 422 ~~~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l~Y~ei~~~~~~g~~~~wD~~a~~py~~~~~ 501 (743)
||+.+++||.++++
T Consensus 246 ------------------------------------------------------------------~D~~~~~~y~~~~~ 259 (299)
T cd02879 246 ------------------------------------------------------------------YDTTTVSSYVYAGT 259 (299)
T ss_pred ------------------------------------------------------------------cCCCcceEEEEECC
Confidence 78888899999999
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCceEEEEeccCCCCCC
Q psy14882 502 QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTG 539 (743)
Q Consensus 502 ~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~Dd~~g 539 (743)
+||+|||++||++|++||+++||||+|+|+|++||+++
T Consensus 260 ~wi~ydd~~Si~~K~~~a~~~~lgGv~~W~l~~Dd~~~ 297 (299)
T cd02879 260 TWIGYDDVQSIAVKVKYAKQKGLLGYFAWAVGYDDNNW 297 (299)
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCCeEEEEEeecCCccc
Confidence 99999999999999999999999999999999999754
No 5
>KOG2806|consensus
Probab=100.00 E-value=2.2e-60 Score=531.98 Aligned_cols=363 Identities=31% Similarity=0.578 Sum_probs=287.5
Q ss_pred cEEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCeeeccCCCccccchhhHHHHHHHHHHhCCCcEEEEE
Q psy14882 28 LEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLA 107 (743)
Q Consensus 28 ~~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVllS 107 (743)
..++||+..|+.++.....+.+.++++++|||++|+|+.++.++...+.... ....+......+|++||++|+|+|
T Consensus 52 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~----~~~~f~~~~~~~k~~n~~vK~llS 127 (432)
T KOG2806|consen 52 QNTVCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGAR----TMNRFSSYNQTAKSSNPTVKVMIS 127 (432)
T ss_pred ccccccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccch----hhhhhHHHHHHHHhhCCCceEEEE
Confidence 4555555555555443336899999999999999999999987776665432 123577888899999999999999
Q ss_pred EcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCC-CCccHHHHHHHHHHHHHHHHHHHhhcCCCcE
Q psy14882 108 IGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPA-GTDDKKNYVLLLKELREAFEAEAQEVKKPRL 186 (743)
Q Consensus 108 IGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~-~~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~ 186 (743)
||||..+++.|+.+++|++.|+.||+||++||++|+|||||||||||. .+.|+.+|..|++|||++|.++.+.......
T Consensus 128 IGG~~~ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~~~~~~~ 207 (432)
T KOG2806|consen 128 IGGSHGNSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLKSPDTAK 207 (432)
T ss_pred ecCCCCCccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 999943567899999999999999999999999999999999999996 5689999999999999999998776555555
Q ss_pred EEEEeccCCCC-CCCCCCCccccccccceEEeeeccCCCCCCcccccCCCCCCCCCchHHHHHHHHHHHHHhccccccee
Q psy14882 187 LLTAAVPVGPD-NIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRLLL 265 (743)
Q Consensus 187 lLSiAvpa~~~-~~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~~~~~~lr~~~~~~~~~~~~~~~~l 265 (743)
+|+.++..++. ....+||+++|.+++|||
T Consensus 208 ~l~~~v~~~~~~~~~~~ydi~~i~~~~Dfi-------------------------------------------------- 237 (432)
T KOG2806|consen 208 VLEAVVADSKQSAYSDGYDYENLSKYVDFI-------------------------------------------------- 237 (432)
T ss_pred eeeeccccCccchhhccCCHHHHHhhCCeE--------------------------------------------------
Confidence 66666655433 444455555555555555
Q ss_pred eeecCCCCCCCcCcccccccccchheeehhhccCCCCCCC--CCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCcc
Q psy14882 266 TAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES--QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKE 343 (743)
Q Consensus 266 t~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~--~tGh~apL~~~~~~~~~~~~~~v~~av~~w~~~G~p~~ 343 (743)
|||+|||||+|.+ .+||+||||.+.. ..+..++++..+++|++.|.|
T Consensus 238 ---------------------------Ni~syDf~gpw~~~~~tGp~aPl~~~~~--~~~~~~Nvd~~~ky~~~~~~~-- 286 (432)
T KOG2806|consen 238 ---------------------------NIMSYDYYGPWSLPCFTGPPSPLYKGPS--MTNPKMNVDSLLKYWTEKGLP-- 286 (432)
T ss_pred ---------------------------EEecccccCCCcCCCcCCCCcccCCCCc--ccccCcchhhhHHHHhhcCCC--
Confidence 5555555555555 6888888887654 223468999999999998888
Q ss_pred cccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCCCCCCCCCCcc
Q psy14882 344 QASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEY 423 (743)
Q Consensus 344 ~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p~~g~g~~g~~ 423 (743)
++||+||+|+|||.|++.+.... .+.+..+.
T Consensus 287 ------------------------------------------~~Kl~~gip~yg~~w~~~~~~~~-~~~~~~~~------ 317 (432)
T KOG2806|consen 287 ------------------------------------------PSKLVLALPFYGRSWQLLEDSRS-SAAPPFGQ------ 317 (432)
T ss_pred ------------------------------------------chheEEEEecceehhhhcCCcCC-CCCccCCC------
Confidence 99999999999999999875433 33333322
Q ss_pred cccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCc-ccccCccccHHHHHHHhhCCceEEecCCCceeEEEe--C
Q psy14882 424 TISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGK-YTAEAGFMSYYEVCEMLRNGAGYVWDDEMKVPYLVH--G 500 (743)
Q Consensus 424 ~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~-~~~~~G~l~Y~ei~~~~~~g~~~~wD~~a~~py~~~--~ 500 (743)
+.++. .+...|+++|.|||+...+-....||+.+++||+|+ +
T Consensus 318 -----------------------------------~~~~~~~~~~~g~ls~~ei~~~~~~~~~~~~d~~~~~~Y~~~~~~ 362 (432)
T KOG2806|consen 318 -----------------------------------AAPVSMRSKGGGYMSYPEICERKINTGVTHWDEETQTPYLYNIPY 362 (432)
T ss_pred -----------------------------------cccCccccccCceeeHHHHHHHhcccCCceecCCceeeeEEecCC
Confidence 22333 346789999999998666545889999999999999 8
Q ss_pred CEEEEeCCHHHHHHHHHHHHHcCCceEEEEeccCCCCCCcccCCCCCcchHHHHHHHhC
Q psy14882 501 DQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREELN 559 (743)
Q Consensus 501 ~~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~Dd~~g~~cg~~~~~pll~a~~~~l~ 559 (743)
++||+|||++||+.|++||++++|||+|+|.||+||++|++|+....+|++.++.+.+.
T Consensus 363 ~~wvtyen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~~~~~~~~~~~~~~~~ 421 (432)
T KOG2806|consen 363 DQWVTYENERSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNAALSRPQTCSICLKNH 421 (432)
T ss_pred CeEEecCCHHHHHHHHHHHHhcCCceEEEEeccCCCCCCccccccccccceeecccccc
Confidence 99999999999999999999999999999999999999998875558888888877663
No 6
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=8.1e-60 Score=510.48 Aligned_cols=330 Identities=46% Similarity=0.861 Sum_probs=269.3
Q ss_pred EEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCeeeccCCCccccchhhHHHHHHHHHHhCCCcEEEEEE
Q psy14882 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAI 108 (743)
Q Consensus 29 ~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVllSI 108 (743)
+|+|||++|+.+++ .|.+++++.++||||+|+|+.+++++.+.+.. ... ..+.+.++..||+++|++|||++|
T Consensus 1 ~~~~Y~~~w~~~~~---~~~~~~~~~~~~thv~~~~~~~~~~g~~~~~~--~~~--~~~~~~~~~~l~~~~~~~kvl~sv 73 (334)
T smart00636 1 RVVGYFTNWGVYGR---NFPVDDIPASKLTHIIYAFANIDPDGTVTIGD--EWA--DIGNFGQLKALKKKNPGLKVLLSI 73 (334)
T ss_pred CEEEEECchhccCC---CCChhHCCcccCcEEEEeeeeeCCCCCEeeCC--cch--hhhhHHHHHHHHHhCCCCEEEEEE
Confidence 58999999997763 69999999999999999999999876655542 111 113567899999999999999999
Q ss_pred cCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCC-ccHHHHHHHHHHHHHHHHHHHhhcCCCcEE
Q psy14882 109 GGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT-DDKKNYVLLLKELREAFEAEAQEVKKPRLL 187 (743)
Q Consensus 109 GGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~-~dk~nfv~LLkeLR~~L~~~~~~~~~~~~l 187 (743)
|||.. +..|+.++.+++.|++||++|+++|++|+|||||||||+|... .++++|+.||++||++|++..+ . +++++
T Consensus 74 gg~~~-s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~-~-~~~~~ 150 (334)
T smart00636 74 GGWTE-SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGA-E-GKGYL 150 (334)
T ss_pred eCCCC-CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcc-c-CCceE
Confidence 99985 4689999999999999999999999999999999999999753 6889999999999999987522 2 45899
Q ss_pred EEEeccCCCCCCCCCCC-ccccccccceEEeeeccCCCCCCcccccCCCCCCCCCchHHHHHHHHHHHHHhcccccceee
Q psy14882 188 LTAAVPVGPDNIKGGYD-VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRLLLT 266 (743)
Q Consensus 188 LSiAvpa~~~~~~~~yd-~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~~~~~~lr~~~~~~~~~~~~~~~~lt 266 (743)
||+++|+........|+ ++++.+
T Consensus 151 lsi~v~~~~~~~~~~~~~~~~l~~-------------------------------------------------------- 174 (334)
T smart00636 151 LTIAVPAGPDKIDKGYGDLPAIAK-------------------------------------------------------- 174 (334)
T ss_pred EEEEecCChHHHHhhhhhHHHHHh--------------------------------------------------------
Confidence 99999976554332344 244444
Q ss_pred eecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCccccc
Q psy14882 267 AAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQAS 346 (743)
Q Consensus 267 ~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~~~~~v~~av~~w~~~G~p~~~~~ 346 (743)
++||||+|+||+||.|++.+||+|||+....+. ..++++.+|+.|++.|+|
T Consensus 175 ---------------------~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~---~~~~v~~~v~~~~~~gvp----- 225 (334)
T smart00636 175 ---------------------YLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDP---EKYNVDYAVKYYLCKGVP----- 225 (334)
T ss_pred ---------------------hCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCC---CCccHHHHHHHHHHcCCC-----
Confidence 455555555555555655778888887655432 356899999999999988
Q ss_pred ccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCCCCCCCCCCccccc
Q psy14882 347 FTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTIS 426 (743)
Q Consensus 347 ~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p~~g~g~~g~~~~~ 426 (743)
++||+||||+|||.|++.++.+..
T Consensus 226 ---------------------------------------~~KlvlGip~YG~~~~~~~~~~~~----------------- 249 (334)
T smart00636 226 ---------------------------------------PSKLVLGIPFYGRGWTLVDGSNNG----------------- 249 (334)
T ss_pred ---------------------------------------HHHeEEeeccccCccccCCCCcCC-----------------
Confidence 999999999999999987654333
Q ss_pred ccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccccHHHHHHHhhCCceEEecCCCceeEEEe-C-CEEE
Q psy14882 427 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGYVWDDEMKVPYLVH-G-DQWV 504 (743)
Q Consensus 427 ~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l~Y~ei~~~~~~g~~~~wD~~a~~py~~~-~-~~~I 504 (743)
+|+++.|.+.+|+++.++|.++|.|||+.+ ++...||+++++||.|+ + ++||
T Consensus 250 ------------------------~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~--~~~~~~d~~~~~~y~~~~~~~~~v 303 (334)
T smart00636 250 ------------------------PGAPFTGPATGGPGTWEGGVVDYREICKLL--GATVVWDDTAKAPYAYNPGTGQWV 303 (334)
T ss_pred ------------------------CCCcccCCCCCCCCCCcccchhHHHHHhhc--CcEEEEcCCCceeEEEECCCCEEE
Confidence 344455555667777889999999999876 78999999999999998 4 4999
Q ss_pred EeCCHHHHHHHHHHHHHcCCceEEEEeccCC
Q psy14882 505 GFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 535 (743)
Q Consensus 505 sYDd~~Si~~K~~yak~~gLgGv~vW~L~~D 535 (743)
+|||++|+++|++||+++||||+|+|+|++|
T Consensus 304 ~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 304 SYDDPRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred EcCCHHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 9999999999999999999999999999997
No 7
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=4.1e-60 Score=516.69 Aligned_cols=327 Identities=29% Similarity=0.565 Sum_probs=258.9
Q ss_pred EEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCeeeccCCCccccchhhHHHHHHHHHHhCCCcEEEEEE
Q psy14882 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAI 108 (743)
Q Consensus 29 ~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVllSI 108 (743)
|+||||++|+.+|.+ ..|.+++||+++||||+|+|+.+++++.+.... ..+.+.++.++| ++|||+||
T Consensus 1 ~~v~Y~~~w~~~r~~-~~~~~~~i~~~~~THi~yaf~~~~~~g~l~~~~-------~~~~~~~~~~~k----~lkvllsi 68 (345)
T cd02878 1 KNIAYFEAYNLDRPC-LNMDVTQIDTSKYTHIHFAFANITSDFSVDVSS-------VQEQFSDFKKLK----GVKKILSF 68 (345)
T ss_pred CEEEEEChhhcCCCC-CCCCHhHCCcccCCEEEEEeEeecCCCeEeecc-------cHHHHHHHHhhc----CcEEEEEE
Confidence 589999999998875 479999999999999999999998876554321 123456665554 49999999
Q ss_pred cCCCCCch-----hhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC----------CccHHHHHHHHHHHHHH
Q psy14882 109 GGWSFGTQ-----KFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG----------TDDKKNYVLLLKELREA 173 (743)
Q Consensus 109 GGw~~ss~-----~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~----------~~dk~nfv~LLkeLR~~ 173 (743)
|||+.+.. .|+.++ ++++|++||++|+++|++|+|||||||||||.. ++|+++|+.||++||++
T Consensus 69 GG~~~s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~ 147 (345)
T cd02878 69 GGWDFSTSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSK 147 (345)
T ss_pred eCCCCCCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 99997653 488888 999999999999999999999999999999963 35899999999999999
Q ss_pred HHHHHhhcCCCcEEEEEeccCCCCCCCCCCCccccccccceEEeeeccCCCCCCcccccCCCCCCCCCchHHHHHHHHHH
Q psy14882 174 FEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEA 253 (743)
Q Consensus 174 L~~~~~~~~~~~~lLSiAvpa~~~~~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~~~~~~lr~~~~~ 253 (743)
|++ +++||+++|+..... ..||++++.+++||||||||||||.|+..++|++|.. +.
T Consensus 148 l~~--------~~~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~-p~------------- 204 (345)
T cd02878 148 LPS--------GKSLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGC-PA------------- 204 (345)
T ss_pred hCc--------CcEEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCC-Cc-------------
Confidence 964 578999998875543 3678888888888888888888877776444443311 00
Q ss_pred HHHhcccccceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHH
Q psy14882 254 EAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAAN 333 (743)
Q Consensus 254 ~~~~~~~~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~~~~~v~~av~ 333 (743)
..++.... ...+++.+|+
T Consensus 205 --------------------------------------------------------~~~~~~~~------~~~~~~~~v~ 222 (345)
T cd02878 205 --------------------------------------------------------GNCLRSHV------NKTETLDALS 222 (345)
T ss_pred --------------------------------------------------------ccccccCC------CchhHHHHHH
Confidence 00000000 1135788899
Q ss_pred HHHHcCCCcccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCC
Q psy14882 334 MWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSP 413 (743)
Q Consensus 334 ~w~~~G~p~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p 413 (743)
.|++.|+| ++||+||||+|||.|++.++.+.++++|
T Consensus 223 ~~~~~Gvp--------------------------------------------~~KlvlGip~YGr~~~l~~~~~~~~~~p 258 (345)
T cd02878 223 MITKAGVP--------------------------------------------SNKVVVGVASYGRSFKMADPGCTGPGCT 258 (345)
T ss_pred HHHHcCCC--------------------------------------------HHHeEEeeccccceeeccCCCCCCCCCc
Confidence 99999988 9999999999999999998877766666
Q ss_pred CCCCCCCCcccccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccccHHHHHHHh--hCCceEEecCC
Q psy14882 414 ASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEML--RNGAGYVWDDE 491 (743)
Q Consensus 414 ~~g~g~~g~~~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l~Y~ei~~~~--~~g~~~~wD~~ 491 (743)
+.|.+. .+.+|+++...|++.|.|||..+ .+++...||+.
T Consensus 259 ~~g~~~--------------------------------------~~~~g~~~~~~g~~~~~e~~~~~~~~~~~~~~~d~~ 300 (345)
T cd02878 259 FTGPGS--------------------------------------GAEAGRCTCTAGYGAISEIEIIDISKSKNKRWYDTD 300 (345)
T ss_pred ccCCCC--------------------------------------CCCCCCCCCchhhhhHHHHHHHHhccCCCcEEEecC
Confidence 554331 12345666778899999999754 35789999999
Q ss_pred CceeEE-EeCCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeccCC
Q psy14882 492 MKVPYL-VHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 535 (743)
Q Consensus 492 a~~py~-~~~~~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~D 535 (743)
+++||+ |++++||+|||++||+.|++||+++||||+|+|+||+|
T Consensus 301 ~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 301 SDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 999997 56789999999999999999999999999999999987
No 8
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=2.6e-59 Score=505.75 Aligned_cols=296 Identities=42% Similarity=0.786 Sum_probs=245.5
Q ss_pred EEEEEeCCccccccCCCCCCC-CCCCCCccEEEEeeEEeeCCCeeeccCC--------------CccccchhhHHHHHHH
Q psy14882 30 VVCYYTNWSQYRTKIGKFQPE-DIEPDLCTHIIFAFGWLKKGKLSSFESN--------------DETKDGKVGLYERIEQ 94 (743)
Q Consensus 30 VvgYy~~W~~~~~~~~~f~~~-~Ip~~~~THIiyaFa~i~~~~~~sf~~~--------------~~~~d~~~g~~~~l~~ 94 (743)
|+|||++|+.|++ .+.+. +||+++||||+|+|+.|++++...+... ....+...+.++++..
T Consensus 1 v~~Y~~~W~~~~~---~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (322)
T cd06548 1 VVGYFTNWGIYGR---NYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRK 77 (322)
T ss_pred CEEEeCCCcccCC---CCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHH
Confidence 6899999999987 35666 7999999999999999998765543211 0122345678999999
Q ss_pred HHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC---------CccHHHHHH
Q psy14882 95 LKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG---------TDDKKNYVL 165 (743)
Q Consensus 95 LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~---------~~dk~nfv~ 165 (743)
||++||++|||+|||||+.+ ..|+.++++++.|++||++|+++|++|+|||||||||||.. ++++++|+.
T Consensus 78 lk~~~p~lkvl~siGG~~~s-~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ 156 (322)
T cd06548 78 LKQKNPHLKILLSIGGWTWS-GGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTL 156 (322)
T ss_pred HHHhCCCCEEEEEEeCCCCC-CCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHH
Confidence 99999999999999999954 68999999999999999999999999999999999999975 478999999
Q ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEeccCCCCCCCCCCCccccccccceEEeeeccCCCCCCcccccCCCCCCCCCchHH
Q psy14882 166 LLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEW 245 (743)
Q Consensus 166 LLkeLR~~L~~~~~~~~~~~~lLSiAvpa~~~~~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~~~~~ 245 (743)
||++||++|++.+++. +++++||+++|+...... .+++++
T Consensus 157 ll~~Lr~~l~~~~~~~-~~~~~Ls~av~~~~~~~~-~~~~~~-------------------------------------- 196 (322)
T cd06548 157 LLKELREALDALGAET-GRKYLLTIAAPAGPDKLD-KLEVAE-------------------------------------- 196 (322)
T ss_pred HHHHHHHHHHHhhhcc-CCceEEEEEccCCHHHHh-cCCHHH--------------------------------------
Confidence 9999999999875443 346999999997654332 334444
Q ss_pred HHHHHHHHHHHhcccccceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCcccccc
Q psy14882 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQ 325 (743)
Q Consensus 246 ~lr~~~~~~~~~~~~~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~~~ 325 (743)
+.+++||||+|||||||.|+..+||+||||+...++ ...
T Consensus 197 ---------------------------------------l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~~~~--~~~ 235 (322)
T cd06548 197 ---------------------------------------IAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADP--PGG 235 (322)
T ss_pred ---------------------------------------HhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCCCCC--CCC
Confidence 445555555555555566666888888888765433 235
Q ss_pred ccHHHHHHHHHHcCCCcccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCC
Q psy14882 326 LSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNP 405 (743)
Q Consensus 326 ~~v~~av~~w~~~G~p~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~ 405 (743)
++++.+++.|++.|+| ++||+||||+|||.|++
T Consensus 236 ~~v~~~v~~~~~~gvp--------------------------------------------~~KlvlGip~YGr~~~~--- 268 (322)
T cd06548 236 YSVDAAVNYYLSAGVP--------------------------------------------PEKLVLGVPFYGRGWTG--- 268 (322)
T ss_pred ccHHHHHHHHHHcCCC--------------------------------------------HHHeEEEecccccccCC---
Confidence 7899999999999988 99999999999999852
Q ss_pred CccccCCCCCCCCCCCcccccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccccHHHHHHHhhCCce
Q psy14882 406 AVFKVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485 (743)
Q Consensus 406 ~~~~~~~p~~g~g~~g~~~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l~Y~ei~~~~~~g~~ 485 (743)
+.
T Consensus 269 ------------------------------------------------------------------------------~~ 270 (322)
T cd06548 269 ------------------------------------------------------------------------------YT 270 (322)
T ss_pred ------------------------------------------------------------------------------cE
Confidence 35
Q ss_pred EEecCCCceeEEEeC--CEEEEeCCHHHHHHHHHHHHHcCCceEEEEeccCC
Q psy14882 486 YVWDDEMKVPYLVHG--DQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 535 (743)
Q Consensus 486 ~~wD~~a~~py~~~~--~~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~D 535 (743)
..||+.+++||+|++ ++||+|||++||++|++||+++||||+|+|+|++|
T Consensus 271 ~~~D~~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 271 RYWDEVAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred EEEcCCcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 689999999999987 89999999999999999999999999999999997
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=1.6e-53 Score=459.98 Aligned_cols=336 Identities=40% Similarity=0.814 Sum_probs=264.6
Q ss_pred cEEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCeeecc-CCCccccchhhHHHHHHHHHHhCCCcEEEE
Q psy14882 28 LEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFE-SNDETKDGKVGLYERIEQLKKANPKLKTLL 106 (743)
Q Consensus 28 ~~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~~sf~-~~~~~~d~~~g~~~~l~~LK~~nP~lKVll 106 (743)
++|+|||++|+.++.+ .|.+++++.++||||+|+|+.++.++..... ......+.....++.+..+|+++|++|||+
T Consensus 1 ~~vv~Y~~~~~~~~~~--~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvll 78 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPG--SYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLL 78 (343)
T ss_dssp BEEEEEEEGGGGSSTG--CSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEEECCcCCCCCC--CCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEE
Confidence 5899999999987764 5889999999999999999999987654321 111112335567888999999999999999
Q ss_pred EEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCC---ccHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14882 107 AIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT---DDKKNYVLLLKELREAFEAEAQEVKK 183 (743)
Q Consensus 107 SIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~---~dk~nfv~LLkeLR~~L~~~~~~~~~ 183 (743)
+||||..+...|..++.+++.|++||++|+++|++|+|||||||||+|... +++++|..||++||++|++.....
T Consensus 79 sigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~-- 156 (343)
T PF00704_consen 79 SIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSG-- 156 (343)
T ss_dssp EEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred EeccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccccc--
Confidence 999998665589999999999999999999999999999999999999753 589999999999999999865433
Q ss_pred CcEEEEEeccCCCCCCCCCCCccccccccceEEeeeccCCCCCCcccccCCCCCCCCCchHHHHHHHHHHHHHhcccccc
Q psy14882 184 PRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRL 263 (743)
Q Consensus 184 ~~~lLSiAvpa~~~~~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~~~~~~lr~~~~~~~~~~~~~~~ 263 (743)
++++||+++|+.+.... .++++++.+++|||++
T Consensus 157 ~~~~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~---------------------------------------------- 189 (343)
T PF00704_consen 157 KGYILSVAVPPSPDYYD-KYDYKELAQYVDYVNL---------------------------------------------- 189 (343)
T ss_dssp STSEEEEEEECSHHHHT-THHHHHHHTTSSEEEE----------------------------------------------
T ss_pred ceeEEeecccccccccc-cccccccccccccccc----------------------------------------------
Confidence 36899999987655332 2344555555555555
Q ss_pred eeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCcc
Q psy14882 264 LLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKE 343 (743)
Q Consensus 264 ~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~~~~~v~~av~~w~~~G~p~~ 343 (743)
|+||+++.|+..++|++||++...+ ...++++.+++.|+..|+|
T Consensus 190 -------------------------------m~yD~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~v~~~~~~g~p-- 233 (343)
T PF00704_consen 190 -------------------------------MTYDYHGPWSDVTGPNAPLYDSSWD---SNYYSVDSAVQYWIKAGVP-- 233 (343)
T ss_dssp -------------------------------ETTSSSSTTSSBETTSSSSSHTTTS---GTSSSHHHHHHHHHHTTST--
T ss_pred -------------------------------ccccCCCCcccccccccccccCCcc---CCCceeeeehhhhccccCC--
Confidence 5555555555577888888765533 2357899999999999988
Q ss_pred cccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCCCCCCCCCCcc
Q psy14882 344 QASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEY 423 (743)
Q Consensus 344 ~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p~~g~g~~g~~ 423 (743)
++||+||+|+||+.|++.+........+..
T Consensus 234 ------------------------------------------~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~-------- 263 (343)
T PF00704_consen 234 ------------------------------------------PSKLVLGLPFYGRSWTLVNGSPNGPWGPAY-------- 263 (343)
T ss_dssp ------------------------------------------GGGEEEEEESEEEEEESSSSTTSTTTBBEE--------
T ss_pred ------------------------------------------hhheeecCCcccccceecCCcCCCCCCccc--------
Confidence 999999999999999987654322111110
Q ss_pred cccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccccHHHHHHHh-hCCceEEecCCCceeEEEeC--
Q psy14882 424 TISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEML-RNGAGYVWDDEMKVPYLVHG-- 500 (743)
Q Consensus 424 ~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l~Y~ei~~~~-~~g~~~~wD~~a~~py~~~~-- 500 (743)
..++.++...|.++|.++|..+ .+++...||+.+++||.+++
T Consensus 264 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~~ 308 (343)
T PF00704_consen 264 -----------------------------------WSPGKGTKNAGILSYYELCALLKSNGYTVQWDDTAQAPYAYNDDK 308 (343)
T ss_dssp -----------------------------------SEETTTTSBTTEEEHHHHHHHTHHTTEEEEEETTTTEEEEEETTT
T ss_pred -----------------------------------ccccccccCCCccccccchhhcccCCcceEEeecccceEEEecCC
Confidence 1234455788999999999877 57899999999999999987
Q ss_pred CEEEEeCCHHHHHHHHHHHHHcCCceEEEEeccCC
Q psy14882 501 DQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMD 535 (743)
Q Consensus 501 ~~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~D 535 (743)
++||+|||++|++.|++||+++||||+|+|+|++|
T Consensus 309 ~~~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 309 KHWISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp TEEEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred CeEEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 79999999999999999999999999999999997
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=1.6e-49 Score=428.72 Aligned_cols=291 Identities=23% Similarity=0.401 Sum_probs=223.9
Q ss_pred EEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCe-eeccCCCccccchhhHHHHHHHHHHhCCCcEEE--
Q psy14882 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKL-SSFESNDETKDGKVGLYERIEQLKKANPKLKTL-- 105 (743)
Q Consensus 29 ~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~-~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVl-- 105 (743)
.++|||++|+.+ .|.+.+++.++||||+|+|+.+++.+. ....... +.. ...+..+|+++|++|||
T Consensus 4 ~~~~y~~~W~~~-----~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~---~~~---~~~~~~lk~~~~~lkvlp~ 72 (318)
T cd02876 4 PVLGYVTPWNSH-----GYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTH---DID---KGWIEEVRKANKNIKILPR 72 (318)
T ss_pred ceEEEEcCcCcc-----chHHHHHHhccCCEecceEEEEecCCCeeeeecCc---chh---hHHHHHHHhhCCCcEEEeE
Confidence 579999999764 478899999999999999999986442 3222211 111 13567899999999999
Q ss_pred EEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeee-ccCCCC---CccHHHHHHHHHHHHHHHHHHHhhc
Q psy14882 106 LAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDID-WEYPAG---TDDKKNYVLLLKELREAFEAEAQEV 181 (743)
Q Consensus 106 lSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDID-WEyP~~---~~dk~nfv~LLkeLR~~L~~~~~~~ 181 (743)
+++|||+. ..|+.++++++.|++||+++++++++||||||||| ||||.. ++++++|+.||++||++|++.
T Consensus 73 i~~gg~~~--~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~---- 146 (318)
T cd02876 73 VLFEGWSY--QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSA---- 146 (318)
T ss_pred EEECCCCH--HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhc----
Confidence 66799873 46999999999999999999999999999999999 999974 358999999999999999874
Q ss_pred CCCcEEEEEeccCCCCC-----CCCCCCccccccccceEEeeeccCCCCCCcccccCCCCCCCCCchHHHHHHHHHHHHH
Q psy14882 182 KKPRLLLTAAVPVGPDN-----IKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQ 256 (743)
Q Consensus 182 ~~~~~lLSiAvpa~~~~-----~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~~~~~~lr~~~~~~~~ 256 (743)
++.|++++|+.... ....|
T Consensus 147 ---~~~l~~~v~~~~~~~~~~~~~~~~----------------------------------------------------- 170 (318)
T cd02876 147 ---NLKLILVIPPPREKGNQNGLFTRK----------------------------------------------------- 170 (318)
T ss_pred ---CCEEEEEEcCcccccccccccccc-----------------------------------------------------
Confidence 56777777754321 11123
Q ss_pred hcccccceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHH
Q psy14882 257 EVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWV 336 (743)
Q Consensus 257 ~~~~~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~~~~~v~~av~~w~ 336 (743)
|++++.+++|||||||||+||. ..+||+|||+ .++.+++.|+
T Consensus 171 ------------------------d~~~l~~~vD~v~lMtYD~~~~--~~~g~~apl~------------~v~~~v~~~~ 212 (318)
T cd02876 171 ------------------------DFEKLAPHVDGFSLMTYDYSSP--QRPGPNAPLS------------WVRSCLELLL 212 (318)
T ss_pred ------------------------CHHHHHhhccEEEEEeeccCCC--CCCCCCCCcH------------HHHHHHHHHH
Confidence 4445555555555555555554 4789999884 4888899998
Q ss_pred HcC-CCcccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCCCC
Q psy14882 337 RLG-APKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPAS 415 (743)
Q Consensus 337 ~~G-~p~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p~~ 415 (743)
..| +| ++||+||||+|||.|++.+. +.|
T Consensus 213 ~~~~vp--------------------------------------------~~KlvlGip~YG~~w~~~~~-----~~~-- 241 (318)
T cd02876 213 PESGKK--------------------------------------------RAKILLGLNFYGNDYTLPGG-----GGA-- 241 (318)
T ss_pred hcCCCC--------------------------------------------HHHeEEeccccccccccCCC-----Cce--
Confidence 876 77 99999999999999986420 000
Q ss_pred CCCCCCcccccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccccHHHHHHHhhCCceEEecCCCcee
Q psy14882 416 GGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGYVWDDEMKVP 495 (743)
Q Consensus 416 g~g~~g~~~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l~Y~ei~~~~~~g~~~~wD~~a~~p 495 (743)
+ ....|.+++. ..++...||++++.+
T Consensus 242 -------~---------------------------------------------~~~~~~~~~~--~~~~~~~~d~~~~~~ 267 (318)
T cd02876 242 -------I---------------------------------------------TGSEYLKLLK--SNKPKLQWDEKSAEH 267 (318)
T ss_pred -------e---------------------------------------------ehHHHHHHHH--hcCCCceeccCCCcc
Confidence 0 0023555554 346788999996655
Q ss_pred -EEEeC---CEEEEeCCHHHHHHHHHHHHHcCCceEEEEeccCCC
Q psy14882 496 -YLVHG---DQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536 (743)
Q Consensus 496 -y~~~~---~~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~Dd 536 (743)
|.|++ ++||+|||++|++.|++||+++|| |+|+|+|++++
T Consensus 268 ~~~y~~~~~~~~v~ydd~~Si~~K~~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 268 FFEYKNKGGKHAVFYPTLKSIQLRLDLAKELGT-GISIWELGQGL 311 (318)
T ss_pred eEEEecCCCcEEEEeCCHHHHHHHHHHHHHcCC-cEEEEcccCCc
Confidence 67765 789999999999999999999999 99999999986
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=7.5e-47 Score=414.18 Aligned_cols=302 Identities=25% Similarity=0.404 Sum_probs=223.6
Q ss_pred CCCcEEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCeeeccCCCccccchhhHHHHHHHHHHhCCCcEE
Q psy14882 25 ERLLEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKT 104 (743)
Q Consensus 25 ~~~~~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKV 104 (743)
...++|+||..+- ..-...+++.+|||... +. + + ..+...++++ ++||
T Consensus 33 ~~~~~~~~~~~~~---------~~~~~~~~~~~tti~~~------~~---~---~----------~~~~~~A~~~-~v~v 80 (358)
T cd02875 33 GPRFEFLVFSVNS---------TNYPNYDWSKVTTIAIF------GD---I---D----------DELLCYAHSK-GVRL 80 (358)
T ss_pred CCceEEEEEEeCC---------CcCcccccccceEEEec------CC---C---C----------HHHHHHHHHc-CCEE
Confidence 4678999999753 23457789999999966 10 0 1 2233333333 8999
Q ss_pred EEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC--CccHHHHHHHHHHHHHHHHHHHhhcC
Q psy14882 105 LLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG--TDDKKNYVLLLKELREAFEAEAQEVK 182 (743)
Q Consensus 105 llSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~--~~dk~nfv~LLkeLR~~L~~~~~~~~ 182 (743)
+++ |+.. ...++++++|++||+++++++++|||||||||||||.. ++++++|+.||++||++|++.
T Consensus 81 ~~~-~~~~------~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~----- 148 (358)
T cd02875 81 VLK-GDVP------LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKE----- 148 (358)
T ss_pred EEE-CccC------HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhc-----
Confidence 987 3322 14677999999999999999999999999999999974 468999999999999999874
Q ss_pred CCcEEEEEeccCCCCCCCC-CCCccccccccceEEeeeccCCCC-CCcccccCCCCCCCCCchHHHHHHHHHHHHHhccc
Q psy14882 183 KPRLLLTAAVPVGPDNIKG-GYDVPAVAGYLDFINLMAYDFHGK-WESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKK 260 (743)
Q Consensus 183 ~~~~lLSiAvpa~~~~~~~-~yd~~~L~~~vDfInlMtYD~~G~-w~~~~g~~Spl~~~~~~~~~~lr~~~~~~~~~~~~ 260 (743)
+++++||+++|..+..... .||+++|++++|||+|||||+|+. |+.
T Consensus 149 ~~~~~Lsvav~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~-------------------------------- 196 (358)
T cd02875 149 NPGYQISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGK-------------------------------- 196 (358)
T ss_pred CCCcEEEEEEecCcccccccccCHHHHHhhCCEeeEEeecccCCCCCC--------------------------------
Confidence 3468999999876655443 377777777777777777777653 331
Q ss_pred ccceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCC
Q psy14882 261 PRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGA 340 (743)
Q Consensus 261 ~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~~~~~v~~av~~w~~~G~ 340 (743)
...+||+||+ .+++.+++.|+..|+
T Consensus 197 -------------------------------------------~~~~g~~ap~------------~~v~~~v~~~~~~gv 221 (358)
T cd02875 197 -------------------------------------------ECIAGANSPY------------SQTLSGYNNFTKLGI 221 (358)
T ss_pred -------------------------------------------CCCCCCCCCc------------hhHHHHHHHHHHcCC
Confidence 0146778876 247788999998888
Q ss_pred CcccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCCCCCCCCC
Q psy14882 341 PKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKA 420 (743)
Q Consensus 341 p~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p~~g~g~~ 420 (743)
| ++||+||||+|||.|++.+.......+
T Consensus 222 p--------------------------------------------~~KLvLGip~YGr~w~~~~~~~~~~~~-------- 249 (358)
T cd02875 222 D--------------------------------------------PKKLVMGLPWYGYDYPCLNGNLEDVVC-------- 249 (358)
T ss_pred C--------------------------------------------HHHeEEEeCCCCCceeCCCCcccCccc--------
Confidence 8 999999999999999875432110000
Q ss_pred CcccccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCccc-ccCccccHHHHHHHhhC-CceEEecCCCceeEEE
Q psy14882 421 GEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYT-AEAGFMSYYEVCEMLRN-GAGYVWDDEMKVPYLV 498 (743)
Q Consensus 421 g~~~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~-~~~G~l~Y~ei~~~~~~-g~~~~wD~~a~~py~~ 498 (743)
...+.|+.|.+ ++ ...+.++|.|||+++.. ++...||+++++||++
T Consensus 250 ----------------------------~~~~~p~~g~~----~~~~~g~~i~Y~ei~~~~~~~~~~~~wD~~~~~py~~ 297 (358)
T cd02875 250 ----------------------------TIPKVPFRGAN----CSDAAGRQIPYSEIMKQINSSIGGRLWDSEQKSPFYN 297 (358)
T ss_pred ----------------------------CCCCCCcCCCC----CcCCCCCccCHHHHHHHHhcCCCceeeccccccceEE
Confidence 00011111110 01 12357899999987754 5788999999999984
Q ss_pred -eC----CEEEEeCCHHHHHHHHHHHHHcCCceEEEEeccCCCCCCcc
Q psy14882 499 -HG----DQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTV 541 (743)
Q Consensus 499 -~~----~~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~Dd~~g~~ 541 (743)
++ .+||||||++||+.|++||+++||||+|+|+||+|||+|..
T Consensus 298 y~d~~g~~~~V~ydD~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~ 345 (358)
T cd02875 298 YKDKQGNLHQVWYDNPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLP 345 (358)
T ss_pred EecCCCcEEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeccccccCCCc
Confidence 32 26999999999999999999999999999999999999873
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=2.7e-46 Score=402.34 Aligned_cols=292 Identities=25% Similarity=0.404 Sum_probs=219.0
Q ss_pred EEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCeeeccCCCccccchhhHHHHHHHHHHhCCCcEEEEEE
Q psy14882 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAI 108 (743)
Q Consensus 29 ~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVllSI 108 (743)
.|+|||++|+... +....-..+++|||++.++.+++++.+... . ..+.+..+|+ + ++|||++|
T Consensus 3 ~~~g~~~~~~~~~-----~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~--~--------~~~~~~~a~~-~-~~kv~~~i 65 (313)
T cd02874 3 EVLGYYTPRNGSD-----YESLRANAPYLTYIAPFWYGVDADGTLTGL--P--------DERLIEAAKR-R-GVKPLLVI 65 (313)
T ss_pred eEEEEEecCCCch-----HHHHHHhcCCCCEEEEEEEEEcCCCCCCCC--C--------CHHHHHHHHH-C-CCeEEEEE
Confidence 5899999998642 233344668899999999999876643211 1 1133334444 4 89999999
Q ss_pred cCCC---CCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy14882 109 GGWS---FGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPR 185 (743)
Q Consensus 109 GGw~---~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~~~~~~~~~ 185 (743)
|||. +++..|+.++++++.|++||++|++++++|||||||||||++. .+++++|+.||++||++|++. +
T Consensus 66 ~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~-~~d~~~~~~fl~~lr~~l~~~-------~ 137 (313)
T cd02874 66 TNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVP-PEDREAYTQFLRELSDRLHPA-------G 137 (313)
T ss_pred ecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCC-HHHHHHHHHHHHHHHHHhhhc-------C
Confidence 9997 6777899999999999999999999999999999999999886 578999999999999999864 5
Q ss_pred EEEEEeccCCCCC-----CCCCCCccccccccceEEeeeccCCCCCCcccccCCCCCCCCCchHHHHHHHHHHHHHhccc
Q psy14882 186 LLLTAAVPVGPDN-----IKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKK 260 (743)
Q Consensus 186 ~lLSiAvpa~~~~-----~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~~~~~~lr~~~~~~~~~~~~ 260 (743)
++|++++++.... ....||+++|++++|||+|
T Consensus 138 ~~lsv~~~p~~~~~~~~~~~~~~~~~~l~~~vD~v~l------------------------------------------- 174 (313)
T cd02874 138 YTLSTAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVL------------------------------------------- 174 (313)
T ss_pred cEEEEEecCccccccccccccccCHHHHHhhCCEEEE-------------------------------------------
Confidence 7888887654221 1123444455555555555
Q ss_pred ccceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCC
Q psy14882 261 PRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGA 340 (743)
Q Consensus 261 ~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~~~~~v~~av~~w~~~G~ 340 (743)
|+||+||.|+ .+||+||+. .++..++.++ .|+
T Consensus 175 ----------------------------------m~YD~~~~~~-~~gp~a~~~------------~~~~~~~~~~-~gv 206 (313)
T cd02874 175 ----------------------------------MTYDWHWRGG-PPGPVAPIG------------WVERVLQYAV-TQI 206 (313)
T ss_pred ----------------------------------EEeccCCCCC-CCCccCChH------------HHHHHHHHHH-hcC
Confidence 4555555442 567777762 2444454443 555
Q ss_pred CcccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCCCCCCCCC
Q psy14882 341 PKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKA 420 (743)
Q Consensus 341 p~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p~~g~g~~ 420 (743)
| ++||+||||+|||.|++.++..
T Consensus 207 p--------------------------------------------~~KlvlGip~YG~~w~~~~~~~------------- 229 (313)
T cd02874 207 P--------------------------------------------REKILLGIPLYGYDWTLPYKKG------------- 229 (313)
T ss_pred C--------------------------------------------HHHEEEeecccccccccCCCCC-------------
Confidence 5 9999999999999998653100
Q ss_pred CcccccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccccHHHHHHHhh-CCceEEecCCCceeEEE-
Q psy14882 421 GEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLR-NGAGYVWDDEMKVPYLV- 498 (743)
Q Consensus 421 g~~~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l~Y~ei~~~~~-~g~~~~wD~~a~~py~~- 498 (743)
...+.++|.++++++. .++...||+.+++||.+
T Consensus 230 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y 264 (313)
T cd02874 230 ---------------------------------------------GKASTISPQQAINLAKRYGAEIQYDEEAQSPFFRY 264 (313)
T ss_pred ---------------------------------------------cCccccCHHHHHHHHHHcCCCeEECcccCCCcEEE
Confidence 1235677888887664 57899999999999874
Q ss_pred eC----CEEEEeCCHHHHHHHHHHHHHcCCceEEEEeccCCCCC
Q psy14882 499 HG----DQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFT 538 (743)
Q Consensus 499 ~~----~~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~Dd~~ 538 (743)
.+ .+||+|||++|++.|++|++++||||+|+|+|++||..
T Consensus 265 ~~~~g~~~~v~y~d~~Si~~K~~~~~~~~lgGv~iW~lg~dD~~ 308 (313)
T cd02874 265 VDEQGRRHEVWFEDARSLQAKFELAKEYGLRGVSYWRLGLEDPQ 308 (313)
T ss_pred EeCCCCEEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCCcc
Confidence 22 47999999999999999999999999999999999954
No 13
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=2.7e-42 Score=361.17 Aligned_cols=142 Identities=25% Similarity=0.332 Sum_probs=115.0
Q ss_pred EEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCeeeccCCCccccchhhHHHHHHHHHHhCCCcEEEEEEc
Q psy14882 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIG 109 (743)
Q Consensus 30 VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVllSIG 109 (743)
|+|||++|+.+. ..++++|.++||||+|+|+.+++++.+.+... ...+...+..+|+ +++|||++||
T Consensus 1 vigyy~~w~~~~-----~~~~~~~~~~lThv~~~f~~i~~~G~l~~~~~------~~~~~~~~~~~~~--~~~kvl~sig 67 (253)
T cd06545 1 VVGYLPNYDDLN-----ALSPTIDFSKLTHINLAFANPDANGTLNANPV------RSELNSVVNAAHA--HNVKILISLA 67 (253)
T ss_pred CEEEeCCccccc-----CCcccCChhhCCeEEEEEEEECCCCeEEecCc------HHHHHHHHHHHHh--CCCEEEEEEc
Confidence 689999998652 37899999999999999999988766554311 1112233334443 4899999999
Q ss_pred CCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14882 110 GWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLT 189 (743)
Q Consensus 110 Gw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLS 189 (743)
||..+ .|..++.+++.|++||++|++++++|+|||||||||+|... +++|..|+++||++|++. +++||
T Consensus 68 g~~~~--~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~~l~~~-------~~~lt 136 (253)
T cd06545 68 GGSPP--EFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYAALKKE-------GKLLT 136 (253)
T ss_pred CCCCC--cchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHHHHhhc-------CcEEE
Confidence 99854 36678999999999999999999999999999999999753 889999999999999864 57899
Q ss_pred EeccCC
Q psy14882 190 AAVPVG 195 (743)
Q Consensus 190 iAvpa~ 195 (743)
+++++.
T Consensus 137 ~av~~~ 142 (253)
T cd06545 137 AAVSSW 142 (253)
T ss_pred EEccCc
Confidence 988754
No 14
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=6.8e-42 Score=366.51 Aligned_cols=289 Identities=22% Similarity=0.300 Sum_probs=215.4
Q ss_pred EEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEee-CCCeeeccCCCccccchhhHHHHHHHHHHhCCCcEEEEE
Q psy14882 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLK-KGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLA 107 (743)
Q Consensus 29 ~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~-~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVllS 107 (743)
.++|||++|.... +.........+|||+..|..+. .++.+..... .+....+..+|+++|.++++.+
T Consensus 1 ~~l~~~~~w~~~s-----~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~d-------~~~~~~~~~~k~~~~~l~~~~~ 68 (298)
T cd06549 1 IALAFYTPWDDAS-----FASLKRHAPRLDWLVPEWLNLTGPEGRIDVFVD-------PQGVAIIAAAKAHPKVLPLVQN 68 (298)
T ss_pred CeeEEEecCChhh-----HHHHHHhhccCCEEeceeEEEecCCCceeccCC-------hHHHHHHHHHHcCCceeEEEEe
Confidence 3789999996532 3334445568999999999997 4444432211 1233456678888888999999
Q ss_pred EcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHHHhhcCCCcEE
Q psy14882 108 IGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLL 187 (743)
Q Consensus 108 IGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~l 187 (743)
++|+.++...|+.++++++.|++||++|++++++|+|||||||||++. ++++++|+.||++||++|++. +++
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~-~~d~~~~~~fl~eL~~~l~~~-------~~~ 140 (298)
T cd06549 69 ISGGAWDGKNIARLLADPSARAKFIANIAAYLERNQADGIVLDFEELP-ADDLPKYVAFLSELRRRLPAQ-------GKQ 140 (298)
T ss_pred cCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC-hhHHHHHHHHHHHHHHHhhhc-------CcE
Confidence 998887777899999999999999999999999999999999999875 589999999999999999874 678
Q ss_pred EEEeccCCCCCCCCCCCccccccccceEEeeeccCCCCCCcccccCCCCCCCCCchHHHHHHHHHHHHHhcccccceeee
Q psy14882 188 LTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRLLLTA 267 (743)
Q Consensus 188 LSiAvpa~~~~~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~~~~~~lr~~~~~~~~~~~~~~~~lt~ 267 (743)
|++++|+... .||+++|.+++|+|+||+||+|+.+..
T Consensus 141 lsv~v~~~~~----~~d~~~l~~~~D~v~lMtYD~~~~~~~--------------------------------------- 177 (298)
T cd06549 141 LTVTVPADEA----DWNLKALARNADKLILMAYDEHYQGGA--------------------------------------- 177 (298)
T ss_pred EEEEecCCCC----CCCHHHHHHhCCEEEEEEeccCCCCCC---------------------------------------
Confidence 9999987643 478888888888888888888764321
Q ss_pred ecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCcccccc
Q psy14882 268 AVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASF 347 (743)
Q Consensus 268 a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~~~~~v~~av~~w~~~G~p~~~~~~ 347 (743)
+|+.+++ .| ++..++
T Consensus 178 ---------------------------------------~gp~a~~-------~~-----~~~~~~-------------- 192 (298)
T cd06549 178 ---------------------------------------PGPIASQ-------DW-----FESNLA-------------- 192 (298)
T ss_pred ---------------------------------------CCCCCCh-------hh-----HHHHHH--------------
Confidence 2222221 01 222222
Q ss_pred cccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCCCCCCCCCCcccccc
Q psy14882 348 TLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTISK 427 (743)
Q Consensus 348 ~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p~~g~g~~g~~~~~~ 427 (743)
+..+++|++||+||||+|||.|++....
T Consensus 193 -------------------------------~~~~~vp~~KlvlGip~YG~~w~~~~~~--------------------- 220 (298)
T cd06549 193 -------------------------------QAVKKLPPEKLIVALGSYGYDWTKGGNT--------------------- 220 (298)
T ss_pred -------------------------------HHHhCCCHHHEEEEecccCccccCCCCC---------------------
Confidence 2234455999999999999999864210
Q ss_pred cccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccccHHHHHH-HhhCCceEEecCCCcee-EEEe-C---C
Q psy14882 428 EKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCE-MLRNGAGYVWDDEMKVP-YLVH-G---D 501 (743)
Q Consensus 428 ~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l~Y~ei~~-~~~~g~~~~wD~~a~~p-y~~~-~---~ 501 (743)
..+...+... +...+....||+.+..| |.|. + .
T Consensus 221 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 259 (298)
T cd06549 221 -----------------------------------------KAISSEAAWLLAAHASAAVKFDDKASNATYFFYDDEGVS 259 (298)
T ss_pred -----------------------------------------cccCHHHHHHHHHHcCCcceecccccCCceEEEcCCCcE
Confidence 0112233333 34556788898877666 4553 2 3
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCceEEEEeccCCCCC
Q psy14882 502 QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFT 538 (743)
Q Consensus 502 ~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~Dd~~ 538 (743)
++|||||.+|++.|+++|+++||||+++|+|++||+.
T Consensus 260 h~Vw~~d~~Sl~~K~~~a~~~~l~Gva~W~lg~ed~~ 296 (298)
T cd06549 260 HEVWMLDAVTLFNQLKAVQRLGPAGVALWRLGSEDPG 296 (298)
T ss_pred EEEEeccHHHHHHHHHHHHHcCCCcEEEEeccCCCCC
Confidence 7999999999999999999999999999999999853
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=1.7e-33 Score=284.33 Aligned_cols=175 Identities=43% Similarity=0.809 Sum_probs=135.6
Q ss_pred EEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCeeeccCCCccccchhhHHHHHHHHHHhCCCcEEEEEEc
Q psy14882 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIG 109 (743)
Q Consensus 30 VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVllSIG 109 (743)
++|||.+|+.++.. .+..++.++||||+|+|+.+++++...... .. ........+..+++++|++|||+|||
T Consensus 1 vv~y~~~w~~~~~~----~~~~~~~~~~thvi~~f~~v~~~~~~~~~~-~~---~~~~~~~~i~~l~~~~~g~kv~~sig 72 (210)
T cd00598 1 VICYYDGWSSGRGP----DPTDIPLSLCTHIIYAFAEISSDGSLNLFG-DK---SEEPLKGALEELASKKPGLKVLISIG 72 (210)
T ss_pred CEEEEccccccCCC----ChhhCCcccCCEEEEeeEEECCCCCEeccc-Cc---ccHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 58999999986542 278999999999999999998765443311 11 12235678889999889999999999
Q ss_pred CCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCc--cHHHHHHHHHHHHHHHHHHHhhcCCCcEE
Q psy14882 110 GWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTD--DKKNYVLLLKELREAFEAEAQEVKKPRLL 187 (743)
Q Consensus 110 Gw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~--dk~nfv~LLkeLR~~L~~~~~~~~~~~~l 187 (743)
||..+. .+ .++.+++.|++|++++++++++|+|||||||||+|.... ++++|+.||++||++|++. +++
T Consensus 73 g~~~~~-~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~-------~~~ 143 (210)
T cd00598 73 GWTDSS-PF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAA-------NYL 143 (210)
T ss_pred CCCCCC-Cc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhccc-------CcE
Confidence 998553 34 788999999999999999999999999999999998643 5899999999999999764 689
Q ss_pred EEEeccCCCCCCCCCCCccccccccceEEeeecc
Q psy14882 188 LTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYD 221 (743)
Q Consensus 188 LSiAvpa~~~~~~~~yd~~~L~~~vDfInlMtYD 221 (743)
||+++|+........|++.++.+++|||++|+||
T Consensus 144 ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 144 LTIAVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred EEEEecCChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 9999997665433224455555555555544443
No 16
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.98 E-value=7.4e-31 Score=275.66 Aligned_cols=151 Identities=20% Similarity=0.289 Sum_probs=119.0
Q ss_pred EEEEEEeCCccccccC-CCCCCCCCCCCCccEEEEeeEEeeCCCeeeccCCCccccchhhHHHHHHHHHHhCCCcEEEEE
Q psy14882 29 EVVCYYTNWSQYRTKI-GKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLA 107 (743)
Q Consensus 29 ~VvgYy~~W~~~~~~~-~~f~~~~Ip~~~~THIiyaFa~i~~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVllS 107 (743)
|+||||++|..+++.. ..+++..++..+||||||+|+.++.++.+.+.......+...++++.+..+|+ +++|||+|
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~l~~~d~~~~~~~~~~~~~~i~~~~~--~g~KVllS 78 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNIHLNDHPPDHPRFTTLWTELAILQS--SGVKVMGM 78 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCeEEECCCCCCcchhhHHHHHHHHHHh--CCCEEEEE
Confidence 6899999998776533 33445577889999999999999887665554221111122356677777764 59999999
Q ss_pred EcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHHHhhcCCCcEE
Q psy14882 108 IGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLL 187 (743)
Q Consensus 108 IGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~l 187 (743)
||||+.+ .|+.++++++.|++|++++++++++|+|||||||||+|. +..+|+.||++||++|+ ++++
T Consensus 79 iGG~~~~--~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~---~~~~~~~ll~~Lr~~~~--------~~~~ 145 (256)
T cd06546 79 LGGAAPG--SFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM---SLDGIIRLIDRLRSDFG--------PDFI 145 (256)
T ss_pred ECCCCCC--CcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC---CHhHHHHHHHHHHHHhC--------CCcE
Confidence 9999843 488888899999999999999999999999999999985 36799999999999884 2688
Q ss_pred EEEeccC
Q psy14882 188 LTAAVPV 194 (743)
Q Consensus 188 LSiAvpa 194 (743)
||++..+
T Consensus 146 lT~Ap~~ 152 (256)
T cd06546 146 ITLAPVA 152 (256)
T ss_pred EEECCcc
Confidence 9987654
No 17
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.97 E-value=2.5e-29 Score=263.34 Aligned_cols=166 Identities=19% Similarity=0.278 Sum_probs=114.4
Q ss_pred CCCCCCCCCC--ccEEEEeeEE-eeCC---CeeeccCCCccccchhhHHHHHHHHHHhCCCcEEEEEEcCCCCCc-hhhh
Q psy14882 47 FQPEDIEPDL--CTHIIFAFGW-LKKG---KLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWSFGT-QKFK 119 (743)
Q Consensus 47 f~~~~Ip~~~--~THIiyaFa~-i~~~---~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVllSIGGw~~ss-~~fs 119 (743)
..+++||.+. ||||||+|+. .+.. +...+.... +.....++++..||++||++|||+|||||+.+. ..+.
T Consensus 13 ~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~ 89 (253)
T cd06544 13 VTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYW---DTENLTPEAVKSIKAQHPNVKVVISIGGRGVQNNPTPF 89 (253)
T ss_pred ccccccCCCCCeeEEEEEEeeeecccccCCCCCcccccc---CccccCHHHHHHHHHhCCCcEEEEEeCCCCCCCCcccc
Confidence 4689999998 9999999993 3220 011122111 112235789999999999999999999999753 1222
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCCCCC
Q psy14882 120 EMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNI 199 (743)
Q Consensus 120 ~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSiAvpa~~~~~ 199 (743)
...+....|++||+|+++||++|||||||||||||. .++++|+.||++||++|++. ++++.+++.+.....
T Consensus 90 ~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~~l~~~-------~~lt~a~vap~~~~~ 160 (253)
T cd06544 90 DPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLITELKNN-------GVIKVASIAPSEDAE 160 (253)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHHHhhhc-------CCeEEEEecCCcccc
Confidence 333444566778999999999999999999999994 67999999999999999864 333333333222211
Q ss_pred CCCCCccccccccceEEeeeccCCCC
Q psy14882 200 KGGYDVPAVAGYLDFINLMAYDFHGK 225 (743)
Q Consensus 200 ~~~yd~~~L~~~vDfInlMtYD~~G~ 225 (743)
..+.++.+.+++|+|++|+|||++.
T Consensus 161 -~~~y~~~~~~~~d~id~~~~qfy~~ 185 (253)
T cd06544 161 -QSHYLALYNAYGDYIDYVNYQFYNY 185 (253)
T ss_pred -ccccHHHHHHhhCceeEEEhhhhCC
Confidence 2233555566666666666666543
No 18
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.96 E-value=9.3e-29 Score=267.14 Aligned_cols=244 Identities=27% Similarity=0.487 Sum_probs=180.4
Q ss_pred HHHHhCCCcEEEEEE--c---CCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHH
Q psy14882 94 QLKKANPKLKTLLAI--G---GWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLK 168 (743)
Q Consensus 94 ~LK~~nP~lKVllSI--G---Gw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLk 168 (743)
..+++ +++.++.+ + +..++.+.++.+|.++..++++++++++.++.+|+.||.||+|.-. +.|++.|..|||
T Consensus 155 ~~~~~--~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~-~~DR~~yt~flR 231 (423)
T COG3858 155 IAQCR--KIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVG-PGDRELYTDFLR 231 (423)
T ss_pred hhhhc--ccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCC-HHHHHHHHHHHH
Confidence 34444 56666655 3 3345556789999999999999999999999999999999999655 699999999999
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEeccCCCCCC-----CCCCCccccccccceEEeeeccCCCCCCcccccCCCCCCCCCch
Q psy14882 169 ELREAFEAEAQEVKKPRLLLTAAVPVGPDNI-----KGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDS 243 (743)
Q Consensus 169 eLR~~L~~~~~~~~~~~~lLSiAvpa~~~~~-----~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~~~ 243 (743)
++|..|++. ++.+++|+++..... ...||+.++.+++|||.||+||.|+.|.
T Consensus 232 ~~r~~l~~~-------G~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~gG---------------- 288 (423)
T COG3858 232 QVRDALHSG-------GYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSGG---------------- 288 (423)
T ss_pred HHHHHhccC-------CeEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCCC----------------
Confidence 999999874 799999999765322 2345666666666666666666664432
Q ss_pred HHHHHHHHHHHHHhcccccceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCcccc
Q psy14882 244 EWQLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWR 323 (743)
Q Consensus 244 ~~~lr~~~~~~~~~~~~~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~ 323 (743)
.+|+-||+
T Consensus 289 --------------------------------------------------------------~PG~vA~i---------- 296 (423)
T COG3858 289 --------------------------------------------------------------PPGPVASI---------- 296 (423)
T ss_pred --------------------------------------------------------------CCCcccCc----------
Confidence 23444433
Q ss_pred ccccHHHHHHHHHHcCCCcccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeecccccccccc
Q psy14882 324 KQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLT 403 (743)
Q Consensus 324 ~~~~v~~av~~w~~~G~p~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~ 403 (743)
.|++ .+..|....+|++||+||+|+||++|.+.
T Consensus 297 ----------~~vr-------------------------------------~~ieya~T~iP~~Kv~mGip~YGYDW~~~ 329 (423)
T COG3858 297 ----------GWVR-------------------------------------KVIEYALTVIPAEKVMMGIPLYGYDWTLP 329 (423)
T ss_pred ----------hhHh-------------------------------------hhhhhhheecchHHeEEccccccccccCC
Confidence 1222 23456677899999999999999999875
Q ss_pred CCCccccCCCCCCCCCCCcccccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccccHH-HHHHHhhC
Q psy14882 404 NPAVFKVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY-EVCEMLRN 482 (743)
Q Consensus 404 ~~~~~~~~~p~~g~g~~g~~~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l~Y~-ei~~~~~~ 482 (743)
.+.. |.+ ..+ +.+. .|....+.
T Consensus 330 y~~~-------------g~~------------------------------------------~~a--~~~~~~i~ia~~y 352 (423)
T COG3858 330 YDPL-------------GYL------------------------------------------ARA--ISPDEAIDIANRY 352 (423)
T ss_pred CCCC-------------cce------------------------------------------eee--cCcchhhhhhccc
Confidence 4210 000 001 1111 23333345
Q ss_pred CceEEecCCCceeEEEe----C-CEEEEeCCHHHHHHHHHHHHHcCCceEEEEeccCCCCCC
Q psy14882 483 GAGYVWDDEMKVPYLVH----G-DQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTG 539 (743)
Q Consensus 483 g~~~~wD~~a~~py~~~----~-~~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~Dd~~g 539 (743)
++.+.||..++.||++. + .++|||+|.+|++.|+++||++||.||++|.|+++|.+.
T Consensus 353 ~A~Iq~D~~~qsp~F~y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~~ 414 (423)
T COG3858 353 NATIQYDATSQSPFFYYVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPRN 414 (423)
T ss_pred CCccCcCccccCceEEEEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcchhH
Confidence 68889999999999964 3 589999999999999999999999999999999998654
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.96 E-value=5.5e-28 Score=260.81 Aligned_cols=150 Identities=23% Similarity=0.295 Sum_probs=114.6
Q ss_pred cEEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCee--eccCCCc-cccchhhHHHHHHHHHHhCCCcEE
Q psy14882 28 LEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLS--SFESNDE-TKDGKVGLYERIEQLKKANPKLKT 104 (743)
Q Consensus 28 ~~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~~--sf~~~~~-~~d~~~g~~~~l~~LK~~nP~lKV 104 (743)
++++|||++|+.++.+.. ++++.++ +.||||+|+|+.+..++.. .+...+. .......+.+.+..+|++ ++||
T Consensus 1 k~~vgY~~~w~~~~~~~~-~~~~~~~-~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KV 76 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGR-QDLDDVP-SKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKV 76 (312)
T ss_pred CeEEEecCcccCCCCCCC-CCcccCC-CCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEE
Confidence 589999999998876532 3455554 8999999999999865432 2220000 011123467778888876 8999
Q ss_pred EEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCC----ccHHHHHHHHHHHHHHHHHHHhh
Q psy14882 105 LLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT----DDKKNYVLLLKELREAFEAEAQE 180 (743)
Q Consensus 105 llSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~----~dk~nfv~LLkeLR~~L~~~~~~ 180 (743)
|+|||||..+ ..+.+++.|++|+++|++++++|+|||||||||+|... +++++|+.||++||+.|++
T Consensus 77 llSiGG~~~~-----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~---- 147 (312)
T cd02871 77 LISIGGANGH-----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGP---- 147 (312)
T ss_pred EEEEeCCCCc-----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCC----
Confidence 9999999732 24678899999999999999999999999999998653 4779999999999998842
Q ss_pred cCCCcEEEEEeccC
Q psy14882 181 VKKPRLLLTAAVPV 194 (743)
Q Consensus 181 ~~~~~~lLSiAvpa 194 (743)
+++||+|+.+
T Consensus 148 ----~~~lT~AP~~ 157 (312)
T cd02871 148 ----NFILTMAPET 157 (312)
T ss_pred ----CeEEEECCCc
Confidence 6899998543
No 20
>KOG2091|consensus
Probab=99.91 E-value=1.2e-23 Score=218.62 Aligned_cols=300 Identities=21% Similarity=0.304 Sum_probs=212.7
Q ss_pred CCCcEEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCC-eeeccCCCccccchhhHHHHHHHHHHhCCCcE
Q psy14882 25 ERLLEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGK-LSSFESNDETKDGKVGLYERIEQLKKANPKLK 103 (743)
Q Consensus 25 ~~~~~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~-~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lK 103 (743)
.-+.-+.||.+.|+.+ .|.+..|-.+++|||...|..+...+ ........ |..+ ..++++++++++++
T Consensus 76 ~f~~~vLayVTPWNs~-----Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~h---did~---gwiralRk~~~~l~ 144 (392)
T KOG2091|consen 76 HFGGTVLAYVTPWNSH-----GYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGKH---DIDP---GWIRALRKSGKDLH 144 (392)
T ss_pred ccCCceEEEecCcCcc-----chhHHHHHhcccceecchheeehhcCcceEEeecc---cCCh---HHHHHHHHhCCCce
Confidence 4567899999999975 58999999999999999999987643 22222111 1223 45678999999999
Q ss_pred EEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeee-ccCCCCCccHHHHHHHHHHHHHHHHHHHhhcC
Q psy14882 104 TLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDID-WEYPAGTDDKKNYVLLLKELREAFEAEAQEVK 182 (743)
Q Consensus 104 VllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDID-WEyP~~~~dk~nfv~LLkeLR~~L~~~~~~~~ 182 (743)
+++-+==..+.+..+..++..++.|++..+-++++++++||||+.|+ |..-.+--.......|++.|-++|++.
T Consensus 145 ivPR~~fd~~~~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~hl~k~Lhkq----- 219 (392)
T KOG2091|consen 145 IVPRFYFDEFTSADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDALELVEHLGKALHKQ----- 219 (392)
T ss_pred eeceehhhhccchHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----
Confidence 98776322333567899999999999999999999999999999998 653222112234556777888888765
Q ss_pred CCcEEEEEeccCCCCCCCCCCCccccccccceEEeeeccCCCCCCcccccCCCCCCCCCchHHHHHHHHHHHHHhccccc
Q psy14882 183 KPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPR 262 (743)
Q Consensus 183 ~~~~lLSiAvpa~~~~~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~~~~~~lr~~~~~~~~~~~~~~ 262 (743)
.+++...+|+....-... -+++
T Consensus 220 --~l~~iLvvPp~~~~e~~~----------------~~~f---------------------------------------- 241 (392)
T KOG2091|consen 220 --ELQAILVVPPVIEEENGQ----------------LKFF---------------------------------------- 241 (392)
T ss_pred --heEEEEEeCCCCcCCCCC----------------cCcC----------------------------------------
Confidence 566666666632211100 0000
Q ss_pred ceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCc
Q psy14882 263 LLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPK 342 (743)
Q Consensus 263 ~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~~~~~v~~av~~w~~~G~p~ 342 (743)
+.-|...+....|++.+|||||-+. ..+|++||+ .|++.++.
T Consensus 242 ---------------t~ee~~~L~~~~d~fsLmTYd~s~~--~~pg~nap~--------------------~wi~~~l~- 283 (392)
T KOG2091|consen 242 ---------------TPEEFSKLVAVYDGFSLMTYDYSLV--QGPGPNAPL--------------------EWIRHCLH- 283 (392)
T ss_pred ---------------CHHHHHHHHHhhhheeEEEeecccc--cCCCCCCCH--------------------HHHHHHHH-
Confidence 1125556677778888888887663 378999998 46665544
Q ss_pred ccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCCCCCCCCCCc
Q psy14882 343 EQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGE 422 (743)
Q Consensus 343 ~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p~~g~g~~g~ 422 (743)
.++|...+ +.||++|+.|||..|...+
T Consensus 284 ------~l~~~s~~-----------------------------r~KiLlGlNFYG~d~~~gd------------------ 310 (392)
T KOG2091|consen 284 ------HLGGSSAK-----------------------------RPKILLGLNFYGNDFNLGD------------------ 310 (392)
T ss_pred ------HhCCcccc-----------------------------ccceeEeeeccccccccCC------------------
Confidence 22332222 7899999999999997521
Q ss_pred ccccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccccHHHHHHHhhC-CceEEecCCCceeEE-Ee-
Q psy14882 423 YTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRN-GAGYVWDDEMKVPYL-VH- 499 (743)
Q Consensus 423 ~~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l~Y~ei~~~~~~-g~~~~wD~~a~~py~-~~- 499 (743)
..+.++-.....+++. .....||+++.++++ |.
T Consensus 311 --------------------------------------------g~~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~~k~ 346 (392)
T KOG2091|consen 311 --------------------------------------------GGEAITAKRYLQLLKGEKSVFKFDEESKEHFFEYKR 346 (392)
T ss_pred --------------------------------------------CCCceeHHHHHHHHhccCcceeeccccchhheeeec
Confidence 0123444444445543 477899999999877 43
Q ss_pred ---CCEEEEeCCHHHHHHHHHHHHHcCCceEEEEeccC
Q psy14882 500 ---GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDM 534 (743)
Q Consensus 500 ---~~~~IsYDd~~Si~~K~~yak~~gLgGv~vW~L~~ 534 (743)
+++.|.|.+..||..++++|++.|. |++||++||
T Consensus 347 n~~gkhivfyPTL~Sl~~Ri~lA~~~gv-gISIWe~Gq 383 (392)
T KOG2091|consen 347 NDDGKHIVFYPTLTSLELRIELARELGV-GISIWEYGQ 383 (392)
T ss_pred cCCCceEEEecchHhHHHHHHHHHHhCC-ceEeeeccC
Confidence 3789999999999999999999998 999999987
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.88 E-value=1e-21 Score=205.66 Aligned_cols=172 Identities=20% Similarity=0.208 Sum_probs=123.4
Q ss_pred EEEEEEeCCccccccCCCCCCCCCCCCCccEEEEeeEEeeCCCeeeccCCCccccchhhHHHHHHHHHHhCCCcEEEEEE
Q psy14882 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAI 108 (743)
Q Consensus 29 ~VvgYy~~W~~~~~~~~~f~~~~Ip~~~~THIiyaFa~i~~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVllSI 108 (743)
+.+|||.+|..... .....+.++| +.+++|++.++.++..+..... -......+.+..++++ ++|||++|
T Consensus 2 ~~~~y~~~~~~~~~-~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~~~------~~~~~~~~~i~~l~~k--G~KVl~si 71 (255)
T cd06542 2 ISFGYFEVWDDKGA-SLQESLLNLP-DSVDMVSLFAANINLDAATAVQ------FLLTNKETYIRPLQAK--GTKVLLSI 71 (255)
T ss_pred eEEEEEEecCCcCc-ccccccccCC-CcceEEEEcccccCcccccchh------hhhHHHHHHHHHHhhC--CCEEEEEE
Confidence 67999999974332 1235677777 5589998855544422110000 0012234666677665 89999999
Q ss_pred cCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCC------ccHHHHHHHHHHHHHHHHHHHhhcC
Q psy14882 109 GGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT------DDKKNYVLLLKELREAFEAEAQEVK 182 (743)
Q Consensus 109 GGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~------~dk~nfv~LLkeLR~~L~~~~~~~~ 182 (743)
|||..+. .| ....+++.|++|+++|++++++|||||||||||++... .+.++|..||++||+.|++
T Consensus 72 gg~~~~~-~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~------ 143 (255)
T cd06542 72 LGNHLGA-GF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGP------ 143 (255)
T ss_pred CCCCCCC-Cc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCc------
Confidence 9998654 33 34567889999999999999999999999999998642 3789999999999999964
Q ss_pred CCcEEEEEeccCCCCCCCCCCCccccccccceEEeeeccCC
Q psy14882 183 KPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFH 223 (743)
Q Consensus 183 ~~~~lLSiAvpa~~~~~~~~yd~~~L~~~vDfInlMtYD~~ 223 (743)
.+++|+++.++..... +.+++.+++|||++|+||.+
T Consensus 144 -~~kllt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~ 179 (255)
T cd06542 144 -TDKLLTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSS 179 (255)
T ss_pred -CCcEEEEEecCCchhc----CHHHHHHhCCEEEeeccCCC
Confidence 2678999887654321 56777888888888877743
No 22
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.83 E-value=3e-19 Score=191.24 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=117.5
Q ss_pred CCCccEEEEeeEEeeCCCeeeccCCCccccchhhHHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHH
Q psy14882 54 PDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIY 133 (743)
Q Consensus 54 ~~~~THIiyaFa~i~~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~ 133 (743)
...|+||+++|+....++...+.... ..+.......++..||++ ++||+||||||... . +..+...|++|++
T Consensus 23 ~~g~~~v~lAFi~~~~~~~~~w~g~~-~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g~--~---~~~~~~~~~~~~~ 94 (294)
T cd06543 23 ATGVKAFTLAFIVASGGCKPAWGGSY-PLDQGGWIKSDIAALRAA--GGDVIVSFGGASGT--P---LATSCTSADQLAA 94 (294)
T ss_pred HcCCCEEEEEEEEcCCCCcccCCCCC-CcccchhHHHHHHHHHHc--CCeEEEEecCCCCC--c---cccCcccHHHHHH
Confidence 35799999999988755444333211 111133467889999988 69999999999832 2 3336789999999
Q ss_pred HHHHHHHhCCCCeeeeeccCCCCCccH---HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCCCCCC-CCCCccccc
Q psy14882 134 SAVPFLRQRNFDGLDIDWEYPAGTDDK---KNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIK-GGYDVPAVA 209 (743)
Q Consensus 134 sIv~~lk~ygfDGVDIDWEyP~~~~dk---~nfv~LLkeLR~~L~~~~~~~~~~~~lLSiAvpa~~~~~~-~~yd~~~L~ 209 (743)
++.++|++|+|||||||||++.. .++ +++..+|++|++++ +++.|++++|..+..+. .++++-+.+
T Consensus 95 a~~~~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~~~---------p~l~vs~Tlp~~p~gl~~~g~~~l~~a 164 (294)
T cd06543 95 AYQKVIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQKEY---------PDLKISFTLPVLPTGLTPDGLNVLEAA 164 (294)
T ss_pred HHHHHHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHHHC---------CCcEEEEecCCCCCCCChhHHHHHHHH
Confidence 99999999999999999999873 454 78888888888766 36889999998776554 456677777
Q ss_pred c----ccceEEeeeccCCCC
Q psy14882 210 G----YLDFINLMAYDFHGK 225 (743)
Q Consensus 210 ~----~vDfInlMtYD~~G~ 225 (743)
+ .+|+||||+|||++.
T Consensus 165 ~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 165 AANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHcCCCcceeeeeeecCCCC
Confidence 7 889999999998753
No 23
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.79 E-value=5.6e-18 Score=180.28 Aligned_cols=150 Identities=23% Similarity=0.205 Sum_probs=100.7
Q ss_pred CCccEEEEeeEEeeCC-CeeeccCCCcccc----chhhHHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHH
Q psy14882 55 DLCTHIIFAFGWLKKG-KLSSFESNDETKD----GKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQ 129 (743)
Q Consensus 55 ~~~THIiyaFa~i~~~-~~~sf~~~~~~~d----~~~g~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~ 129 (743)
..++-|+++|+..-++ +...+.....-.. ....+.+.|..++++ ++|||||||||+.+ ..| .+++.|+
T Consensus 23 ~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~--G~KVlLSIGG~~~~-~~~----~s~~~a~ 95 (280)
T cd02877 23 GNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSK--GKKVLLSIGGAGGS-YSL----SSDADAK 95 (280)
T ss_pred CCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHC--CCEEEEEccCCCCC-cCC----CCHHHHH
Confidence 3578899999865432 2211211111111 123577888888776 89999999999843 222 6889999
Q ss_pred HHHHHHHHHH------------HhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCCC
Q psy14882 130 TFIYSAVPFL------------RQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPD 197 (743)
Q Consensus 130 ~FI~sIv~~l------------k~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSiAvpa~~~ 197 (743)
+|+++|.+++ .+++|||||||||+|.. .+|..|+++||+.+.+.. +++++||+|..+...
T Consensus 96 ~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~~~~~~~----~~~~~LTaAPq~~~~ 167 (280)
T cd02877 96 DFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRSLFASDP----SKKYYLTAAPQCPYP 167 (280)
T ss_pred HHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHHHhhccc----CCceEEEeccccCCc
Confidence 9999998775 25779999999999873 689999999999997531 247999999665321
Q ss_pred CCCCCCCccccc-cccceEEeeeccC
Q psy14882 198 NIKGGYDVPAVA-GYLDFINLMAYDF 222 (743)
Q Consensus 198 ~~~~~yd~~~L~-~~vDfInlMtYD~ 222 (743)
..+....+. .++|||++|.||.
T Consensus 168 ---d~~~~~~i~~~~~D~i~vqfYn~ 190 (280)
T cd02877 168 ---DASLGDAIATGLFDFIFVQFYNN 190 (280)
T ss_pred ---chhHHHHHccCccCEEEEEEecC
Confidence 112222333 3566666666653
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=4.7e-13 Score=136.62 Aligned_cols=183 Identities=21% Similarity=0.331 Sum_probs=116.5
Q ss_pred CCcEEEEEEeCCcccccc-CCCCCCCCCCC----CCccEEEEeeEEeeCCCeeeccCCCccccchhhHHHHHHHHHHhCC
Q psy14882 26 RLLEVVCYYTNWSQYRTK-IGKFQPEDIEP----DLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANP 100 (743)
Q Consensus 26 ~~~~VvgYy~~W~~~~~~-~~~f~~~~Ip~----~~~THIiyaFa~i~~~~~~sf~~~~~~~d~~~g~~~~l~~LK~~nP 100 (743)
.+++++|||.+|...... ...-+..+|.+ ..+..+...|..- ++.+-+|.+... +..++..++.+|.++
T Consensus 24 ~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~-~g~iptf~P~~~---~daeFr~~v~aLnae-- 97 (332)
T COG3469 24 SNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKG-AGDIPTFKPYND---PDAEFRAQVGALNAE-- 97 (332)
T ss_pred ccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeec-CCCCcccCcCCC---CHHHHHHHHHHhhcc--
Confidence 455999999999543211 11223333322 3466666666543 234556655443 345567778888776
Q ss_pred CcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC--CccHHHHHHHHHHHHHHHHHHH
Q psy14882 101 KLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG--TDDKKNYVLLLKELREAFEAEA 178 (743)
Q Consensus 101 ~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~--~~dk~nfv~LLkeLR~~L~~~~ 178 (743)
+--|+||+||.. + .+ -+ ....-+.|+++|++++++|||||+|||.|.... .+...-.-.++|.+|+.....
T Consensus 98 GkavllsLGGAd-g--hI--eL-~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~- 170 (332)
T COG3469 98 GKAVLLSLGGAD-G--HI--EL-KAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQ- 170 (332)
T ss_pred CcEEEEEccCcc-c--eE--Ee-ccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhc-
Confidence 788999999965 2 12 12 233478999999999999999999999995431 123334567777777766543
Q ss_pred hhcCCCcEEEEEeccCCCCCCCCCC--CccccccccceEEeeeccCCCC
Q psy14882 179 QEVKKPRLLLTAAVPVGPDNIKGGY--DVPAVAGYLDFINLMAYDFHGK 225 (743)
Q Consensus 179 ~~~~~~~~lLSiAvpa~~~~~~~~y--d~~~L~~~vDfInlMtYD~~G~ 225 (743)
+.++.||+|....+-.-...| -+.+|..+.|||+.+-|...|.
T Consensus 171 ----Gk~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGd 215 (332)
T COG3469 171 ----GKNFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGD 215 (332)
T ss_pred ----CCceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCC
Confidence 458999999765443322223 2456777777777777776654
No 25
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=99.07 E-value=3.9e-10 Score=123.95 Aligned_cols=133 Identities=24% Similarity=0.406 Sum_probs=89.0
Q ss_pred ccceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCC
Q psy14882 261 PRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGA 340 (743)
Q Consensus 261 ~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~~~~~v~~av~~w~~~G~ 340 (743)
++++|++|+|+.++.. .+||+.++.+++||||+|||||||.|+..++|++|...... ....
T Consensus 150 ~~~~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~--~~~~---------------- 210 (345)
T cd02878 150 SGKSLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGN--CLRS---------------- 210 (345)
T ss_pred cCcEEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCccc--cccc----------------
Confidence 3789999999887654 57999999999999999999999999988888877311000 0000
Q ss_pred CcccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCCCCCCCCC
Q psy14882 341 PKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKA 420 (743)
Q Consensus 341 p~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p~~g~g~~ 420 (743)
..........+..++ . .
T Consensus 211 -------------------------~~~~~~~~~~v~~~~----------------------~----------------~ 227 (345)
T cd02878 211 -------------------------HVNKTETLDALSMIT----------------------K----------------A 227 (345)
T ss_pred -------------------------CCCchhHHHHHHHHH----------------------H----------------c
Confidence 000000111111110 0 0
Q ss_pred CcccccccccccCCCCcCCcccccCCCCCCCCCCCCCCCCCCcccccCccccHHHHHH
Q psy14882 421 GEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCE 478 (743)
Q Consensus 421 g~~~~~~~k~~~g~~~~g~~~~~~~p~~~~~g~~~~~~~~~g~~~~~~G~l~Y~ei~~ 478 (743)
.++++||++|+|+|||.|+++++.+.++|+|+.|++..+......+...|-...+
T Consensus 228 ---Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e 282 (345)
T cd02878 228 ---GVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISE 282 (345)
T ss_pred ---CCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHH
Confidence 1678999999999999999999999999999988766554433334444444343
No 26
>KOG2806|consensus
Probab=99.06 E-value=1.2e-10 Score=131.55 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHhcccccceeeeecCCCCC-CCcCcccccccccc
Q psy14882 243 SEWQLREAFEAEAQEVKKPRLLLTAAVPVGPD-NIKGGYDVPAVAGY 288 (743)
Q Consensus 243 ~~~~lr~~~~~~~~~~~~~~~~lt~a~~~~~~-~~~~~~d~~~l~~~ 288 (743)
...+||++|..+.+...++..+|++++..++- +...+||+++|.++
T Consensus 187 ~i~elr~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ydi~~i~~~ 233 (432)
T KOG2806|consen 187 FIQELRSAFARETLKSPDTAKVLEAVVADSKQSAYSDGYDYENLSKY 233 (432)
T ss_pred HHHHHHHHHHHHhhccCCccceeeeccccCccchhhccCCHHHHHhh
Confidence 34489999999988887778778888777764 88889999998874
No 27
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=98.85 E-value=4.2e-09 Score=116.12 Aligned_cols=22 Identities=64% Similarity=1.156 Sum_probs=19.5
Q ss_pred ccccccccCCCCcCCcccccCC
Q psy14882 425 ISKEKLMIGMPTYGRSFTLVDP 446 (743)
Q Consensus 425 ~~~~k~~~g~~~~g~~~~~~~p 446 (743)
++++||++|+|+||+.|++..+
T Consensus 231 vp~~KlvlGlp~YG~~~~~~~~ 252 (362)
T cd02872 231 APPEKLVLGIPTYGRSFTLASP 252 (362)
T ss_pred CCHHHeEeccccccceeeecCC
Confidence 6789999999999999998653
No 28
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=98.78 E-value=3.8e-09 Score=116.77 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=36.9
Q ss_pred ccceeeeecCCCCCCCcC-cccccccccchheeehhhccCCCCC
Q psy14882 261 PRLLLTAAVPVGPDNIKG-GYDVPAVAGYLDFINLMAYDFHGKW 303 (743)
Q Consensus 261 ~~~~lt~a~~~~~~~~~~-~~d~~~l~~~vD~iniMtYD~~g~w 303 (743)
+.++||++++.++..... .||+.++.+++|||||||||+|+.+
T Consensus 150 ~~~~Lsvav~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~ 193 (358)
T cd02875 150 PGYQISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQI 193 (358)
T ss_pred CCcEEEEEEecCcccccccccCHHHHHhhCCEeeEEeecccCCC
Confidence 368899999988876554 4999999999999999999999863
No 29
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=98.73 E-value=1.8e-08 Score=109.79 Aligned_cols=21 Identities=52% Similarity=1.061 Sum_probs=19.1
Q ss_pred ccccccccCCCCcCCcccccC
Q psy14882 425 ISKEKLMIGMPTYGRSFTLVD 445 (743)
Q Consensus 425 ~~~~k~~~g~~~~g~~~~~~~ 445 (743)
++++||++|+|+||+.|++.+
T Consensus 224 vp~~KlvlGip~YG~~~~~~~ 244 (334)
T smart00636 224 VPPSKLVLGIPFYGRGWTLVD 244 (334)
T ss_pred CCHHHeEEeeccccCccccCC
Confidence 678999999999999999864
No 30
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=98.71 E-value=3e-08 Score=111.62 Aligned_cols=54 Identities=37% Similarity=0.542 Sum_probs=38.0
Q ss_pred HHHHHHHHHhc----ccccceeeeecCCCCCCCcCcccccccccchheeehhhccCCCC
Q psy14882 248 REAFEAEAQEV----KKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGK 302 (743)
Q Consensus 248 r~~~~~~~~~~----~~~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~ 302 (743)
|+.|.++++++ ....++|+++++.... ....||+++|.+++||||||||||||.
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~-~~~~~d~~~l~~~vD~inlMtYD~~g~ 225 (413)
T cd02873 168 KEQFTALVRELKNALRPDGLLLTLTVLPHVN-STWYFDVPAIANNVDFVNLATFDFLTP 225 (413)
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEecCCch-hccccCHHHHhhcCCEEEEEEecccCC
Confidence 44444444433 3456889998754322 223589999999999999999999985
No 31
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=98.69 E-value=1.5e-08 Score=109.24 Aligned_cols=31 Identities=42% Similarity=0.439 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcccccceeeeecCCCCCC
Q psy14882 245 WQLREAFEAEAQEVKKPRLLLTAAVPVGPDN 275 (743)
Q Consensus 245 ~~lr~~~~~~~~~~~~~~~~lt~a~~~~~~~ 275 (743)
.+||++|+++.....++.++||+|+|..+..
T Consensus 133 ~elr~~l~~~~~~~~~~~~~ls~av~~~~~~ 163 (299)
T cd02879 133 EEWRAAVKDEARSSGRPPLLLTAAVYFSPIL 163 (299)
T ss_pred HHHHHHHHHHhhccCCCcEEEEeecccchhh
Confidence 3688888777666666789999999877543
No 32
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=98.34 E-value=2.9e-07 Score=99.39 Aligned_cols=46 Identities=28% Similarity=0.331 Sum_probs=36.1
Q ss_pred HHHHHhcccccceeeeecCCCCCCCcCcccccccccchheeehhhccCCC
Q psy14882 252 EAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHG 301 (743)
Q Consensus 252 ~~~~~~~~~~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g 301 (743)
.++...+...+++|++++|..+. .+|+.++.+++||+++||||+|+
T Consensus 128 ~eL~~~l~~~~~~lsv~v~~~~~----~~d~~~l~~~~D~v~lMtYD~~~ 173 (298)
T cd06549 128 SELRRRLPAQGKQLTVTVPADEA----DWNLKALARNADKLILMAYDEHY 173 (298)
T ss_pred HHHHHHhhhcCcEEEEEecCCCC----CCCHHHHHHhCCEEEEEEeccCC
Confidence 33333334457899999987653 47999999999999999999987
No 33
>KOG4701|consensus
Probab=98.34 E-value=1.7e-05 Score=85.88 Aligned_cols=113 Identities=24% Similarity=0.392 Sum_probs=75.8
Q ss_pred HHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhC----------CCCeeeeeccCCCCCcc
Q psy14882 90 ERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQR----------NFDGLDIDWEYPAGTDD 159 (743)
Q Consensus 90 ~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~y----------gfDGVDIDWEyP~~~~d 159 (743)
.++.....+ ++||||++||.. +. -.+.+.+..+.|++.+-+..-.- =+||+|||.|. ..
T Consensus 94 ~di~~CQS~--GiKVlLSLGG~~-Gn----Ys~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~----g~ 162 (568)
T KOG4701|consen 94 TDIQVCQSN--GIKVLLSLGGYN-GN----YSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEK----GT 162 (568)
T ss_pred hHHHHHHhc--CeEEEEeccCcc-cc----eeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeec----CC
Confidence 455555554 999999999976 32 24567788889999887765432 17999999993 33
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCCCCCCCCCCcccc-ccccceEEeeecc
Q psy14882 160 KKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAV-AGYLDFINLMAYD 221 (743)
Q Consensus 160 k~nfv~LLkeLR~~L~~~~~~~~~~~~lLSiAvpa~~~~~~~~yd~~~L-~~~vDfInlMtYD 221 (743)
...|..|-+.||+.|.+. ++++.|+.|.-+......-+ ..| .+-.||+.|+-|+
T Consensus 163 ~~~ysaLA~~L~~~Fa~~-----~r~yYLsaAPQCP~PD~~~G---~aL~~~~fDf~~IQFYN 217 (568)
T KOG4701|consen 163 NTAYSALAKRLLEIFASD-----PRRYYLSAAPQCPVPDHTLG---KALSENSFDFLSIQFYN 217 (568)
T ss_pred cchHHHHHHHHHHHHccC-----CceEEeccCCCCCCCchhhh---hhhhccccceEEEEeec
Confidence 567999999999999653 45788888765442211100 111 3455667666655
No 34
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=98.24 E-value=1e-06 Score=95.89 Aligned_cols=20 Identities=30% Similarity=0.727 Sum_probs=17.8
Q ss_pred ccccccccCCCCcCCccccc
Q psy14882 425 ISKEKLMIGMPTYGRSFTLV 444 (743)
Q Consensus 425 ~~~~k~~~g~~~~g~~~~~~ 444 (743)
++++||++|+|+||+.|+..
T Consensus 217 vp~~KlvlGip~YG~~w~~~ 236 (318)
T cd02876 217 KKRAKILLGLNFYGNDYTLP 236 (318)
T ss_pred CCHHHeEEeccccccccccC
Confidence 57899999999999999763
No 35
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=98.23 E-value=1.2e-06 Score=95.55 Aligned_cols=15 Identities=53% Similarity=1.127 Sum_probs=13.8
Q ss_pred ccccccccCCCCcCC
Q psy14882 425 ISKEKLMIGMPTYGR 439 (743)
Q Consensus 425 ~~~~k~~~g~~~~g~ 439 (743)
++++||++|+|+|||
T Consensus 250 vp~~KlvlGip~YGr 264 (322)
T cd06548 250 VPPEKLVLGVPFYGR 264 (322)
T ss_pred CCHHHeEEEeccccc
Confidence 678999999999998
No 36
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=98.19 E-value=1.7e-06 Score=93.67 Aligned_cols=19 Identities=47% Similarity=1.067 Sum_probs=17.2
Q ss_pred ccccccccCCCCcCCcccc
Q psy14882 425 ISKEKLMIGMPTYGRSFTL 443 (743)
Q Consensus 425 ~~~~k~~~g~~~~g~~~~~ 443 (743)
++++||++|+|+||+.|.+
T Consensus 206 vp~~KlvlGip~YG~~w~~ 224 (313)
T cd02874 206 IPREKILLGIPLYGYDWTL 224 (313)
T ss_pred CCHHHEEEeeccccccccc
Confidence 5789999999999999975
No 37
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=97.96 E-value=2.5e-05 Score=85.97 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=68.2
Q ss_pred HHHHHhCCCcEEEEEEc-CCCCCchhhhhhcCC-HHHHHHHHHHHHHHHHhCCCCeeeeeccCCC-CCccHHHHHHHHHH
Q psy14882 93 EQLKKANPKLKTLLAIG-GWSFGTQKFKEMSKS-RYSRQTFIYSAVPFLRQRNFDGLDIDWEYPA-GTDDKKNYVLLLKE 169 (743)
Q Consensus 93 ~~LK~~nP~lKVllSIG-Gw~~ss~~fs~~ls~-~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~-~~~dk~nfv~LLke 169 (743)
.++++ | ++|||-.|- -|.-..+.+..++.+ ++.+..+|+.|+++++.|||||+.||+|... ..++.+++..|+++
T Consensus 53 daAHk-n-GV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~~~ 130 (339)
T cd06547 53 NAAHR-N-GVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFLRY 130 (339)
T ss_pred HHHHh-c-CCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHHHH
Confidence 34444 4 999997773 222123467888888 9999999999999999999999999999877 56889999999999
Q ss_pred HHHHHHHH
Q psy14882 170 LREAFEAE 177 (743)
Q Consensus 170 LR~~L~~~ 177 (743)
|++++++.
T Consensus 131 L~~~~~~~ 138 (339)
T cd06547 131 LKAKLHEN 138 (339)
T ss_pred HHHHHhhc
Confidence 99999864
No 38
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=97.75 E-value=2.3e-05 Score=82.51 Aligned_cols=81 Identities=37% Similarity=0.634 Sum_probs=65.7
Q ss_pred cccceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCCC-CCCCCCCCCCCCCCccccccccHHHHHHHHHHc
Q psy14882 260 KPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES-QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRL 338 (743)
Q Consensus 260 ~~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~-~tGh~apL~~~~~~~~~~~~~~v~~av~~w~~~ 338 (743)
+.+++|++|++...... ...++.+++||||||+||+||+|.. .+||++|+. .++.+++.|+..
T Consensus 130 ~~~~~lt~av~~~~~~~----~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~------------~~~~~v~~~~~~ 193 (253)
T cd06545 130 KEGKLLTAAVSSWNGGA----VSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD------------DAVNDLNYWNER 193 (253)
T ss_pred hcCcEEEEEccCccccc----ccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH------------hHHHHHHHHHHc
Confidence 34678999998754322 2456789999999999999999964 688988862 367888999988
Q ss_pred CC-CcccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccc
Q psy14882 339 GA-PKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTF 400 (743)
Q Consensus 339 G~-p~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w 400 (743)
|+ | ++||+||||+|||.|
T Consensus 194 g~ip--------------------------------------------~~KlvlGlp~YG~~w 212 (253)
T cd06545 194 GLAS--------------------------------------------KDKLVLGLPFYGYGF 212 (253)
T ss_pred CCCC--------------------------------------------HHHEEEEeCCccccc
Confidence 86 7 999999999999977
No 39
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=2.6e-05 Score=86.47 Aligned_cols=80 Identities=30% Similarity=0.559 Sum_probs=55.7
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCC-Ceeeeecc--CCCCCccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCCCC
Q psy14882 122 SKSRYSRQTFIYSAVPFLRQRNF-DGLDIDWE--YPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDN 198 (743)
Q Consensus 122 ls~~~~R~~FI~sIv~~lk~ygf-DGVDIDWE--yP~~~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSiAvpa~~~~ 198 (743)
..+.++-..+.++|.+-|.+-+. ||-....- -|.. +. .|. .+
T Consensus 190 ~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as---~~-------------------------~l~-~~------ 234 (441)
T COG3325 190 PKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPAS---KD-------------------------KLE-GL------ 234 (441)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCceEEEEEecCCc---hh-------------------------hhh-cc------
Confidence 44667777888888888888776 55444433 2221 10 111 01
Q ss_pred CCCCCCccccccccceEEeeeccCCCCCCcccccCCCCCCCCC
Q psy14882 199 IKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSS 241 (743)
Q Consensus 199 ~~~~yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~~~~~ 241 (743)
. ..+++++|||||+|||||||.|+...|||++|++...
T Consensus 235 -~----~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~Ly~~~~ 272 (441)
T COG3325 235 -N----HAEIAQYVDYINIMTYDFHGAWNETLGHHAALYGTPK 272 (441)
T ss_pred -c----HHHHHHHHhhhheeeeecccccccccccccccccCCC
Confidence 1 2367899999999999999999999999999997543
No 40
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=97.71 E-value=1.6e-05 Score=86.36 Aligned_cols=23 Identities=48% Similarity=0.962 Sum_probs=20.2
Q ss_pred ccccccccCCCCcCCcccccCCC
Q psy14882 425 ISKEKLMIGMPTYGRSFTLVDPT 447 (743)
Q Consensus 425 ~~~~k~~~g~~~~g~~~~~~~p~ 447 (743)
++++||++|+|+||+.|+...+.
T Consensus 232 ~p~~Kl~lglp~yg~~~~~~~~~ 254 (343)
T PF00704_consen 232 VPPSKLVLGLPFYGRSWTLVNGS 254 (343)
T ss_dssp STGGGEEEEEESEEEEEESSSST
T ss_pred CChhheeecCCcccccceecCCc
Confidence 67899999999999999987653
No 41
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=97.25 E-value=0.00024 Score=78.70 Aligned_cols=87 Identities=34% Similarity=0.544 Sum_probs=67.7
Q ss_pred ccccceeeeecCCCCC-----CCcCcccccccccchheeehhhccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHH
Q psy14882 259 KKPRLLLTAAVPVGPD-----NIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAAN 333 (743)
Q Consensus 259 ~~~~~~lt~a~~~~~~-----~~~~~~d~~~l~~~vD~iniMtYD~~g~w~~~tGh~apL~~~~~~~~~~~~~~v~~av~ 333 (743)
.+..+.+++|+++-.. .+++.+|+..+.+++||+-+||||-|.
T Consensus 238 ~~~G~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~-------------------------------- 285 (423)
T COG3858 238 HSGGYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHY-------------------------------- 285 (423)
T ss_pred ccCCeEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCc--------------------------------
Confidence 4566888888877653 355678999999999999999999642
Q ss_pred HHHHcCCCcccccccccCCCcccCCCCCCCCCCCCcccccchhhhhhhhcCCCCceEEeeccccccccccCCCccccCCC
Q psy14882 334 MWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSP 413 (743)
Q Consensus 334 ~w~~~G~p~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~KLvLGlp~YGr~w~l~~~~~~~~~~p 413 (743)
.+|+||++..-.++..+.+-.+ +
T Consensus 286 -----------------------------~gG~PG~vA~i~~vr~~ieya~------------------T---------- 308 (423)
T COG3858 286 -----------------------------SGGPPGPVASIGWVRKVIEYAL------------------T---------- 308 (423)
T ss_pred -----------------------------CCCCCCcccCchhHhhhhhhhh------------------e----------
Confidence 4588999998889866543111 1
Q ss_pred CCCCCCCCcccccccccccCCCCcCCccccc
Q psy14882 414 ASGGGKAGEYTISKEKLMIGMPTYGRSFTLV 444 (743)
Q Consensus 414 ~~g~g~~g~~~~~~~k~~~g~~~~g~~~~~~ 444 (743)
.++++|+++|+|.||..|...
T Consensus 309 ----------~iP~~Kv~mGip~YGYDW~~~ 329 (423)
T COG3858 309 ----------VIPAEKVMMGIPLYGYDWTLP 329 (423)
T ss_pred ----------ecchHHeEEccccccccccCC
Confidence 167899999999999999864
No 42
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=96.92 E-value=0.0014 Score=71.63 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=58.7
Q ss_pred HHHHHHhCCCcEEEEEEc-CCCCCchhhhhhcC-CHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCC-ccHHHHHHHHH
Q psy14882 92 IEQLKKANPKLKTLLAIG-GWSFGTQKFKEMSK-SRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT-DDKKNYVLLLK 168 (743)
Q Consensus 92 l~~LK~~nP~lKVllSIG-Gw~~ss~~fs~~ls-~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~-~dk~nfv~LLk 168 (743)
+.++ ++| ++|||=.|- .|.-+...+..++. ++.....+++.|+++++.|||||.-|++|.+... ...+++..||+
T Consensus 48 idaA-Hrn-GV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~~ 125 (311)
T PF03644_consen 48 IDAA-HRN-GVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDFLK 125 (311)
T ss_dssp HHHH-HHT-T--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHHHH
T ss_pred HHHH-Hhc-CceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHHHH
Confidence 3344 455 999985441 22223467788888 7788889999999999999999999999988755 68899999999
Q ss_pred HHHHHHHH
Q psy14882 169 ELREAFEA 176 (743)
Q Consensus 169 eLR~~L~~ 176 (743)
+|++++++
T Consensus 126 ~l~~~~~~ 133 (311)
T PF03644_consen 126 YLRKEAHE 133 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 99999986
No 43
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.46 E-value=0.013 Score=64.15 Aligned_cols=94 Identities=21% Similarity=0.256 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCeeeee-ccCCCC-----------------------Ccc-------HHHHHHHHHHHHH
Q psy14882 124 SRYSRQTFIYSAVPFLRQRNFDGLDID-WEYPAG-----------------------TDD-------KKNYVLLLKELRE 172 (743)
Q Consensus 124 ~~~~R~~FI~sIv~~lk~ygfDGVDID-WEyP~~-----------------------~~d-------k~nfv~LLkeLR~ 172 (743)
.++.|+-+++-+.+++++|.+|||.|| .-||.. ..| +++...|+++|+.
T Consensus 135 ~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~ 214 (311)
T PF02638_consen 135 HPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYD 214 (311)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 678898889999999999999999999 455421 133 5778899999999
Q ss_pred HHHHHHhhcCCCcEEEEEeccCCC-CCCC-CCCCcccc--ccccceEEeeeccC
Q psy14882 173 AFEAEAQEVKKPRLLLTAAVPVGP-DNIK-GGYDVPAV--AGYLDFINLMAYDF 222 (743)
Q Consensus 173 ~L~~~~~~~~~~~~lLSiAvpa~~-~~~~-~~yd~~~L--~~~vDfInlMtYD~ 222 (743)
++++. ++...+++++.... ..+. ..-|...- ..++|+|..|.|-.
T Consensus 215 ~ik~~-----kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~ 263 (311)
T PF02638_consen 215 AIKAI-----KPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWS 263 (311)
T ss_pred HHHHh-----CCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeeccc
Confidence 99886 46778887654332 1111 11244333 58999999999964
No 44
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=95.30 E-value=0.048 Score=54.85 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHh-CCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCCCCCCCCC
Q psy14882 125 RYSRQTFIYSAVPFLRQ-RNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGY 203 (743)
Q Consensus 125 ~~~R~~FI~sIv~~lk~-ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSiAvpa~~~~~~~~y 203 (743)
++..++..+.+.++-.. +...||.|||..+. ...+.|..||++||++|.+ ++.|||+.=....... -
T Consensus 23 ~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t--~~L~~Y~~fL~~LR~~LP~--------~~~LSIT~L~dW~~~~--~ 90 (181)
T PF11340_consen 23 EQVLARILQLLQRWQAAGNNVAGIQIDFDAAT--SRLPAYAQFLQQLRQRLPP--------DYRLSITALPDWLSSP--D 90 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEecCccc--cchHHHHHHHHHHHHhCCC--------CceEeeEEehhhhcCc--h
Confidence 44445555554444433 35789999999663 6788999999999999964 4666666432222111 1
Q ss_pred CccccccccceEEeeec
Q psy14882 204 DVPAVAGYLDFINLMAY 220 (743)
Q Consensus 204 d~~~L~~~vDfInlMtY 220 (743)
.++.|...+|-+.+|+|
T Consensus 91 ~L~~L~~~VDE~VlQ~y 107 (181)
T PF11340_consen 91 WLNALPGVVDELVLQVY 107 (181)
T ss_pred hhhhHhhcCCeeEEEee
Confidence 37788999999999999
No 45
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=94.88 E-value=0.017 Score=62.64 Aligned_cols=55 Identities=27% Similarity=0.460 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcccccceeeeecCCCCCCCc-Cccccccccc----chheeehhhccCCCC
Q psy14882 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIK-GGYDVPAVAG----YLDFINLMAYDFHGK 302 (743)
Q Consensus 246 ~lr~~~~~~~~~~~~~~~~lt~a~~~~~~~~~-~~~d~~~l~~----~vD~iniMtYD~~g~ 302 (743)
.+-++++.+-.+. +.+.+++++|+.|..+. .|+++-+.++ .+|+||||||||++.
T Consensus 125 ~~~~al~~Lq~~~--p~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 125 RRAQALALLQKEY--PDLKISFTLPVLPTGLTPDGLNVLEAAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHHHHHHHHHHHC--CCcEEEEecCCCCCCCChhHHHHHHHHHHcCCCcceeeeeeecCCCC
Confidence 4445554443332 68899999999998887 5788888888 999999999999864
No 46
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=94.68 E-value=0.56 Score=51.53 Aligned_cols=92 Identities=21% Similarity=0.243 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeeeeec-cCCCC----------Cc----cHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14882 125 RYSRQTFIYSAVPFLRQRNFDGLDIDW-EYPAG----------TD----DKKNYVLLLKELREAFEAEAQEVKKPRLLLT 189 (743)
Q Consensus 125 ~~~R~~FI~sIv~~lk~ygfDGVDIDW-EyP~~----------~~----dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLS 189 (743)
++.++ ..-.|...+.+.|||.|.||+ .||.. .. -.+....||+..|++|++. +..||
T Consensus 120 ~evw~-Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~-------~v~vS 191 (316)
T PF13200_consen 120 KEVWD-YNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPY-------GVPVS 191 (316)
T ss_pred HHHHH-HHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHc-------CCCEE
Confidence 34444 445588888889999999996 78872 01 2367889999999999875 56788
Q ss_pred EeccCCCCCC----CCCCCccccccccceEEeeeccCCC
Q psy14882 190 AAVPVGPDNI----KGGYDVPAVAGYLDFINLMAYDFHG 224 (743)
Q Consensus 190 iAvpa~~~~~----~~~yd~~~L~~~vDfInlMtYD~~G 224 (743)
+.+....... .-+-++..|+++||+|.-|-|=-|.
T Consensus 192 aDVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh~ 230 (316)
T PF13200_consen 192 ADVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSHY 230 (316)
T ss_pred EEecccccccCCCCCcCCCHHHHhhhCCEEEeccccccc
Confidence 8886543322 3456899999999999999998664
No 47
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=92.15 E-value=0.099 Score=52.77 Aligned_cols=55 Identities=33% Similarity=0.538 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhcccccceeeeecCCCCCCCcCcccccccccchheeehhhcc
Q psy14882 244 EWQLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYD 298 (743)
Q Consensus 244 ~~~lr~~~~~~~~~~~~~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD 298 (743)
...+.+.++++...+.+..++||+|+|..+.....++++.++.+++||+|+|+||
T Consensus 123 ~~~~~~ll~~lr~~l~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 123 RENFITLLRELRSALGAANYLLTIAVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred HHHHHHHHHHHHHHhcccCcEEEEEecCChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 3445555555555555558999999999887766678999999999999999998
No 48
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=88.94 E-value=0.56 Score=49.33 Aligned_cols=52 Identities=15% Similarity=0.085 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcccccceeeeecCCCCCCCcCcccccccccchheeehhhccCCC
Q psy14882 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHG 301 (743)
Q Consensus 246 ~lr~~~~~~~~~~~~~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g 301 (743)
.+...++++.+.+.+++++|+++++...... +..++.+++||+++|+||-++
T Consensus 129 ~~~~lv~~Lr~~~~~~~kllt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~ 180 (255)
T cd06542 129 AFVRLIKELRKYMGPTDKLLTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSS 180 (255)
T ss_pred HHHHHHHHHHHHhCcCCcEEEEEecCCchhc----CHHHHHHhCCEEEeeccCCCC
Confidence 3444455554444445899999987654332 678899999999999998644
No 49
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=87.05 E-value=0.52 Score=51.48 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcccccceeeeecCCCCCC--------CcCcc--cccccccchheeehhhccCCCCC
Q psy14882 245 WQLREAFEAEAQEVKKPRLLLTAAVPVGPDN--------IKGGY--DVPAVAGYLDFINLMAYDFHGKW 303 (743)
Q Consensus 245 ~~lr~~~~~~~~~~~~~~~~lt~a~~~~~~~--------~~~~~--d~~~l~~~vD~iniMtYD~~g~w 303 (743)
.++.+.++++...+. ++++||+|+.+.... ..+.| ...++..++||||+|.||.++.+
T Consensus 132 ~~~~~~lk~lr~~~~-~~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~ 199 (312)
T cd02871 132 TNLISALKQLKDHYG-PNFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMG 199 (312)
T ss_pred HHHHHHHHHHHHHcC-CCeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCcc
Confidence 345555554444433 489999997543211 12233 35677889999999999998764
No 50
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=86.22 E-value=5.2 Score=44.08 Aligned_cols=85 Identities=18% Similarity=0.132 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCcEEE--EEEcCCCCCchhhhh-----------------------hcCCHHHHHHHHHHHHHHHHhCCC
Q psy14882 90 ERIEQLKKANPKLKTL--LAIGGWSFGTQKFKE-----------------------MSKSRYSRQTFIYSAVPFLRQRNF 144 (743)
Q Consensus 90 ~~l~~LK~~nP~lKVl--lSIGGw~~ss~~fs~-----------------------~ls~~~~R~~FI~sIv~~lk~ygf 144 (743)
+.+..||.+ +.+|+ +|||.+......|.. -..+++.|+-+.+. ++.+.+.||
T Consensus 85 ~~i~~Lk~~--g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kGf 161 (315)
T TIGR01370 85 EEIVRAAAA--GRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQGF 161 (315)
T ss_pred HHHHHHHhC--CcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcCC
Confidence 567788865 67777 899974421111111 11256677777766 566778899
Q ss_pred Ceeeeec----cCCCC-----CccHHHHHHHHHHHHHHHHHH
Q psy14882 145 DGLDIDW----EYPAG-----TDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 145 DGVDIDW----EyP~~-----~~dk~nfv~LLkeLR~~L~~~ 177 (743)
|||.||. ++-.. +...+..+.|+++|.+.+|+.
T Consensus 162 DGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~ 203 (315)
T TIGR01370 162 DGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQ 203 (315)
T ss_pred CeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999994 22111 223467888999998888775
No 51
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=85.13 E-value=0.68 Score=49.29 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=29.0
Q ss_pred ccceeeeecCCCCCCCcCcccccccccchheeehhhccCCCCCC
Q psy14882 261 PRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWE 304 (743)
Q Consensus 261 ~~~~lt~a~~~~~~~~~~~~d~~~l~~~vD~iniMtYD~~g~w~ 304 (743)
...|+.+++....... .++.++.+.+|+|+|++|+|||++.+.
T Consensus 145 ~~~lt~a~vap~~~~~-~~~y~~~~~~~~d~id~~~~qfy~~~~ 187 (253)
T cd06544 145 NGVIKVASIAPSEDAE-QSHYLALYNAYGDYIDYVNYQFYNYGV 187 (253)
T ss_pred cCCeEEEEecCCcccc-ccccHHHHHHhhCceeEEEhhhhCCCC
Confidence 3444444444333332 445588889999999999999998754
No 52
>PRK12568 glycogen branching enzyme; Provisional
Probab=84.25 E-value=12 Score=45.62 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCeeeeec-------cC--------CCCCccHHH--HHHHHHHHHHHHHHH
Q psy14882 122 SKSRYSRQTFIYSAVPFLRQRNFDGLDIDW-------EY--------PAGTDDKKN--YVLLLKELREAFEAE 177 (743)
Q Consensus 122 ls~~~~R~~FI~sIv~~lk~ygfDGVDIDW-------Ey--------P~~~~dk~n--fv~LLkeLR~~L~~~ 177 (743)
..+++-|+-+++++.-+|+++++||+-+|- .| |......+| -+.||++|++.+++.
T Consensus 380 ~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~ 452 (730)
T PRK12568 380 YGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQ 452 (730)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999992 11 111112223 368999999999876
No 53
>KOG2331|consensus
Probab=80.96 E-value=4.2 Score=45.93 Aligned_cols=77 Identities=22% Similarity=0.272 Sum_probs=65.6
Q ss_pred CcEEEEE-EcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHH
Q psy14882 101 KLKTLLA-IGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 101 ~lKVllS-IGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~ 177 (743)
+++|+=. |-.|..+...-..++.+++.-+..++-++++.+-.||||=-|+-|.-.......++..|++.|.+++++.
T Consensus 124 GV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~Lt~~~~~~ 201 (526)
T KOG2331|consen 124 GVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHLTKVLHSS 201 (526)
T ss_pred CceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHHHHHHhhc
Confidence 8999944 4567666667788999999999999999999999999999999996665566789999999999999874
No 54
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=80.52 E-value=1.3 Score=47.12 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=30.4
Q ss_pred cccceeeeecCCC----CCCCcCcccccccc----cchheeehhhccCCCC
Q psy14882 260 KPRLLLTAAVPVG----PDNIKGGYDVPAVA----GYLDFINLMAYDFHGK 302 (743)
Q Consensus 260 ~~~~~lt~a~~~~----~~~~~~~~d~~~l~----~~vD~iniMtYD~~g~ 302 (743)
.++++||+|+++. +.....+|++.++. .++||+|+|.||.+|.
T Consensus 141 ~~~~~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~ 191 (256)
T cd06546 141 GPDFIITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGS 191 (256)
T ss_pred CCCcEEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCC
Confidence 3568899887543 22233467877765 4999999999998664
No 55
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=80.22 E-value=1.3 Score=47.87 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=26.9
Q ss_pred cccceeeeecCCCCCCCcCcccccccc-cchheeehhhccCCC
Q psy14882 260 KPRLLLTAAVPVGPDNIKGGYDVPAVA-GYLDFINLMAYDFHG 301 (743)
Q Consensus 260 ~~~~~lt~a~~~~~~~~~~~~d~~~l~-~~vD~iniMtYD~~g 301 (743)
.+.++||+|+++... ..+....+. .++||||+|.||..+
T Consensus 153 ~~~~~LTaAPq~~~~---d~~~~~~i~~~~~D~i~vqfYn~~~ 192 (280)
T cd02877 153 SKKYYLTAAPQCPYP---DASLGDAIATGLFDFIFVQFYNNPC 192 (280)
T ss_pred CCceEEEeccccCCc---chhHHHHHccCccCEEEEEEecCcc
Confidence 467999999877421 123334454 599999999999643
No 56
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.98 E-value=5.5 Score=45.40 Aligned_cols=94 Identities=19% Similarity=0.342 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCeeeee--ccCCCC-------------------Ccc--------HHHHHHHHHHHHHHH
Q psy14882 124 SRYSRQTFIYSAVPFLRQRNFDGLDID--WEYPAG-------------------TDD--------KKNYVLLLKELREAF 174 (743)
Q Consensus 124 ~~~~R~~FI~sIv~~lk~ygfDGVDID--WEyP~~-------------------~~d--------k~nfv~LLkeLR~~L 174 (743)
.++.|+-..+-+++.+++|..|||.|| |=+|.. ..+ +++...||+.+...+
T Consensus 180 ~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~V 259 (418)
T COG1649 180 IPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTV 259 (418)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456777777778889999999999998 323321 011 357889999999999
Q ss_pred HHHHhhcCCCcEEEEEec-c-CCCCCCCCCC---Ccccc--ccccceEEeeeccC
Q psy14882 175 EAEAQEVKKPRLLLTAAV-P-VGPDNIKGGY---DVPAV--AGYLDFINLMAYDF 222 (743)
Q Consensus 175 ~~~~~~~~~~~~lLSiAv-p-a~~~~~~~~y---d~~~L--~~~vDfInlMtYD~ 222 (743)
++. ++...++++. + .....+...+ |+..- ..++|++..|.|=-
T Consensus 260 Kav-----Kp~v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr~ 309 (418)
T COG1649 260 KAV-----KPNVKFSVSPFNPLGSATFAYDYFLQDWRRWVRQGLIDELAPQVYRT 309 (418)
T ss_pred Hhh-----CCCeEEEEccCCCCCccceehhhhhhhHHHHHHcccHhhhhhhhhcc
Confidence 875 5678888887 4 2221121111 22211 67899999998854
No 57
>PRK14706 glycogen branching enzyme; Provisional
Probab=78.57 E-value=27 Score=42.21 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeeeeec-cCC------CC--------CccHHHHHHHHHHHHHHHHHH
Q psy14882 123 KSRYSRQTFIYSAVPFLRQRNFDGLDIDW-EYP------AG--------TDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 123 s~~~~R~~FI~sIv~~lk~ygfDGVDIDW-EyP------~~--------~~dk~nfv~LLkeLR~~L~~~ 177 (743)
.+++.|+-+++++.-+|+++++||+-||- ... .. ......=..||++|++.+++.
T Consensus 279 ~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~ 348 (639)
T PRK14706 279 GRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHM 348 (639)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999993 211 00 011223467999999999875
No 58
>PRK12313 glycogen branching enzyme; Provisional
Probab=77.16 E-value=25 Score=42.41 Aligned_cols=54 Identities=30% Similarity=0.471 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeeeeecc----C----------C---CCCccHHHHHHHHHHHHHHHHHH
Q psy14882 123 KSRYSRQTFIYSAVPFLRQRNFDGLDIDWE----Y----------P---AGTDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 123 s~~~~R~~FI~sIv~~lk~ygfDGVDIDWE----y----------P---~~~~dk~nfv~LLkeLR~~L~~~ 177 (743)
.+++.|+-+++++.-++++|++||+-||-- + | +...+. .=..|++++++.+++.
T Consensus 282 ~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~ 352 (633)
T PRK12313 282 GKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNEVVYLE 352 (633)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999921 0 0 011111 2368999999999875
No 59
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=74.63 E-value=56 Score=39.28 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeeeeecc-CCC-------------CC-c--cHHHHHHHHHHHHHHHHHH
Q psy14882 123 KSRYSRQTFIYSAVPFLRQRNFDGLDIDWE-YPA-------------GT-D--DKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 123 s~~~~R~~FI~sIv~~lk~ygfDGVDIDWE-yP~-------------~~-~--dk~nfv~LLkeLR~~L~~~ 177 (743)
.+++-|+-+++++.-++++|++||+-||-- .-. .. . ....=..|++++++.+++.
T Consensus 268 ~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~ 339 (613)
T TIGR01515 268 GRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEA 339 (613)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999952 100 00 0 0112367999999999875
No 60
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=74.51 E-value=19 Score=45.03 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHhCCCcEEEEEE-------cCCCCCc-------hhhhh----------------hcCCHHHHHHHHHHH
Q psy14882 86 VGLYERIEQLKKANPKLKTLLAI-------GGWSFGT-------QKFKE----------------MSKSRYSRQTFIYSA 135 (743)
Q Consensus 86 ~g~~~~l~~LK~~nP~lKVllSI-------GGw~~ss-------~~fs~----------------~ls~~~~R~~FI~sI 135 (743)
.++.+.+.+|+++ +++||+=+ +|..+.+ ..|.+ ...++.-|+-+++++
T Consensus 404 ~Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 404 KEFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 4566667777776 99999877 3321110 01110 123577789999999
Q ss_pred HHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHH
Q psy14882 136 VPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 136 v~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~ 177 (743)
.-|+++|++||+-||.-.-. -..||+++|.++++.
T Consensus 482 ~~W~~ey~VDGFRfDlm~~~-------~~~f~~~~~~~l~~i 516 (898)
T TIGR02103 482 VVWAKDYKVDGFRFDLMGHH-------PKAQMLAAREAIKAL 516 (898)
T ss_pred HHHHHHcCCCEEEEechhhC-------CHHHHHHHHHHHHHh
Confidence 99999999999999975322 235788888888765
No 61
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=73.41 E-value=38 Score=40.11 Aligned_cols=49 Identities=24% Similarity=0.321 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHH
Q psy14882 126 YSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 126 ~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~ 177 (743)
..|+-+++++.-++++|++||+-||--.-.... .-..|++++++.+++.
T Consensus 220 ~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~---~~~~~l~~~~~~~~~~ 268 (542)
T TIGR02402 220 EVRRYILDNALYWLREYHFDGLRLDAVHAIADT---SAKHILEELAREVHEL 268 (542)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccc---cHHHHHHHHHHHHHHH
Confidence 788999999999999999999999953211111 1257999999999875
No 62
>PRK05402 glycogen branching enzyme; Provisional
Probab=73.35 E-value=38 Score=41.53 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCeeeeec-cC--------------CC--CCccHHHHHHHHHHHHHHHHHH
Q psy14882 122 SKSRYSRQTFIYSAVPFLRQRNFDGLDIDW-EY--------------PA--GTDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 122 ls~~~~R~~FI~sIv~~lk~ygfDGVDIDW-Ey--------------P~--~~~dk~nfv~LLkeLR~~L~~~ 177 (743)
..+++.|+-+++++.-+|+++++||+-||- .. |. ...+...-..|+++|++.+++.
T Consensus 376 ~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~ 448 (726)
T PRK05402 376 YGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEE 448 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 347888999999999999999999999993 11 10 0011123578999999999875
No 63
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=72.80 E-value=47 Score=36.24 Aligned_cols=160 Identities=16% Similarity=0.208 Sum_probs=90.7
Q ss_pred CccEEEE-eeEEeeCCCee--eccCCCccccchhhHHHHHH-HHHHhCCCcEEEEEE--cCCCCCc--------------
Q psy14882 56 LCTHIIF-AFGWLKKGKLS--SFESNDETKDGKVGLYERIE-QLKKANPKLKTLLAI--GGWSFGT-------------- 115 (743)
Q Consensus 56 ~~THIiy-aFa~i~~~~~~--sf~~~~~~~d~~~g~~~~l~-~LK~~nP~lKVllSI--GGw~~ss-------------- 115 (743)
..++|++ +|...+.+|.. .+-++ ........++.++. +|+.+. ++||..-. -+|.+..
T Consensus 30 ~~~tV~Lqaf~d~~gdg~~~~~YFpn-r~lpvraDlf~rvawql~tr~-~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~ 107 (294)
T PF14883_consen 30 GINTVYLQAFADPDGDGNADAVYFPN-RHLPVRADLFNRVAWQLRTRA-GVKVYAWMPVLAFDLPKVKRADEVRTDRPDP 107 (294)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEcCC-CCCchHHHHHHHHHHHHhhhh-CCEEEEeeehhhccCCCcchhhhccccCCCC
Confidence 4677776 77777655532 12222 23345667888887 888775 88887333 2322211
Q ss_pred hhhhhhcC-CHHHHHHHHHHHHHHHHhC-CCCeeee-------eccCCCCCc------cHHHHHHHHHHHHHHHHHHHhh
Q psy14882 116 QKFKEMSK-SRYSRQTFIYSAVPFLRQR-NFDGLDI-------DWEYPAGTD------DKKNYVLLLKELREAFEAEAQE 180 (743)
Q Consensus 116 ~~fs~~ls-~~~~R~~FI~sIv~~lk~y-gfDGVDI-------DWEyP~~~~------dk~nfv~LLkeLR~~L~~~~~~ 180 (743)
....++.- +++.| +.|.+|-+=|..| .||||=| |+|.+.... ....++.|..+|++..+...
T Consensus 108 ~~y~RLSPf~p~~r-~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~r-- 184 (294)
T PF14883_consen 108 DGYRRLSPFDPEAR-QIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYR-- 184 (294)
T ss_pred CCceecCCCCHHHH-HHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhC--
Confidence 01111111 44454 5788899889888 8999988 344322111 12467899999999887752
Q ss_pred cCCCcEEEEEeccCC---CCCCCCC--CCccccccccceEEeeeccCC
Q psy14882 181 VKKPRLLLTAAVPVG---PDNIKGG--YDVPAVAGYLDFINLMAYDFH 223 (743)
Q Consensus 181 ~~~~~~lLSiAvpa~---~~~~~~~--yd~~~L~~~vDfInlMtYD~~ 223 (743)
+.+...--+.+. ...-+.. -++..+.+.-||.-+|+.=|+
T Consensus 185 ---p~lkTARNiya~pvl~P~se~WfAQnl~~fl~~YD~taimAMPym 229 (294)
T PF14883_consen 185 ---PDLKTARNIYAEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYM 229 (294)
T ss_pred ---ccchhhhcccccccCCcchhhHHHHhHHHHHHhCCeeheeccchh
Confidence 222111111111 1111111 256777788899999887665
No 64
>PRK14705 glycogen branching enzyme; Provisional
Probab=71.96 E-value=43 Score=43.43 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeeeeecc-------C--------CCCCccHH--HHHHHHHHHHHHHHHH
Q psy14882 123 KSRYSRQTFIYSAVPFLRQRNFDGLDIDWE-------Y--------PAGTDDKK--NYVLLLKELREAFEAE 177 (743)
Q Consensus 123 s~~~~R~~FI~sIv~~lk~ygfDGVDIDWE-------y--------P~~~~dk~--nfv~LLkeLR~~L~~~ 177 (743)
.+++-|+-+++++.-++++|++||+-||-- | |......+ .=+.||++|.+.+++.
T Consensus 877 ~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~ 948 (1224)
T PRK14705 877 GRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKT 948 (1224)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999952 1 11001112 2368999999999875
No 65
>PLN02960 alpha-amylase
Probab=71.85 E-value=40 Score=42.06 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeeeeec-------------------cCCCCCccHHHHHHHHHHHHHHHHHH
Q psy14882 123 KSRYSRQTFIYSAVPFLRQRNFDGLDIDW-------------------EYPAGTDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 123 s~~~~R~~FI~sIv~~lk~ygfDGVDIDW-------------------EyP~~~~dk~nfv~LLkeLR~~L~~~ 177 (743)
.++..|+-+++++.-+|++|++||+-||= |++....+ ..-+.||++|.+.+++.
T Consensus 529 ~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d-~~Ai~fL~~lN~~v~~~ 601 (897)
T PLN02960 529 GDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVD-RDALIYLILANEMLHQL 601 (897)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCC-chHHHHHHHHHHHHHhh
Confidence 46888999999999999999999999981 11221122 34677899999888864
No 66
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=68.66 E-value=39 Score=40.50 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHH
Q psy14882 124 SRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 124 ~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~ 177 (743)
++.-|+-+++++.-+++++++||+-||.-.-. + ..|++++++++++.
T Consensus 293 ~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~---~----~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 293 REMMRKFIVDSVLYWVKEYNIDGFRFDLMGIH---D----IETMNEIRKALNKI 339 (605)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEechhcC---C----HHHHHHHHHHHHhh
Confidence 67889999999999999999999999965221 1 34788888888764
No 67
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=68.11 E-value=9.3 Score=41.57 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhCCCCeeeeec-cCCCCC---------------ccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEec
Q psy14882 129 QTFIYSAVPFLRQRNFDGLDIDW-EYPAGT---------------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAV 192 (743)
Q Consensus 129 ~~FI~sIv~~lk~ygfDGVDIDW-EyP~~~---------------~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSiAv 192 (743)
-+.--+|...+.+.|||-|.||+ .+|... +..+.+..||.--|++|. .-||+.+
T Consensus 195 WeYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~----------vpIS~DI 264 (400)
T COG1306 195 WEYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE----------VPISADI 264 (400)
T ss_pred hhhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc----------cceEEEe
Confidence 34455788888999999999997 677642 123567778887888774 3466666
Q ss_pred cCC----CCCCCCCCCccccccccceEEeeeccCC
Q psy14882 193 PVG----PDNIKGGYDVPAVAGYLDFINLMAYDFH 223 (743)
Q Consensus 193 pa~----~~~~~~~yd~~~L~~~vDfInlMtYD~~ 223 (743)
-.. +....-+-++..|++|||.|.-|-|--|
T Consensus 265 YG~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSH 299 (400)
T COG1306 265 YGQNGWSSTDMALGQFWEALSSYVDVISPMFYPSH 299 (400)
T ss_pred ecccCccCCcchhhhhHHHHHhhhhhccccccccc
Confidence 432 2223245689999999999999999765
No 68
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=66.44 E-value=72 Score=39.39 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCeeeeec-------------cC-------CCCCccHHHHHHHHHHHHHHHHHH
Q psy14882 124 SRYSRQTFIYSAVPFLRQRNFDGLDIDW-------------EY-------PAGTDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 124 ~~~~R~~FI~sIv~~lk~ygfDGVDIDW-------------Ey-------P~~~~dk~nfv~LLkeLR~~L~~~ 177 (743)
+++-|+-+++++.-++++|++||+-||= +| -+..+|.+ =+.||+++.+.+++.
T Consensus 364 ~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~-a~~fL~~~N~~i~~~ 436 (758)
T PLN02447 364 NWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVD-AVVYLMLANDLLHGL 436 (758)
T ss_pred CHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChH-HHHHHHHHHHHHHHh
Confidence 5678889999999999999999999982 11 11123333 367888888888875
No 69
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=65.97 E-value=39 Score=36.12 Aligned_cols=72 Identities=19% Similarity=0.315 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCC------ccH
Q psy14882 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT------DDK 160 (743)
Q Consensus 87 g~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~------~dk 160 (743)
.+.+.+...++..++..++++|+|.+ . +.++ .+++.+.++|+|+|+|++--|... .+.
T Consensus 84 ~~~~~i~~~~~~~~~~pvi~si~g~~--~-------------~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~ 147 (289)
T cd02810 84 VWLQDIAKAKKEFPGQPLIASVGGSS--K-------------EDYV-ELARKIERAGAKALELNLSCPNVGGGRQLGQDP 147 (289)
T ss_pred HHHHHHHHHHhccCCCeEEEEeccCC--H-------------HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCH
Confidence 45566666655435788999999853 1 1222 234556677999999999766532 234
Q ss_pred HHHHHHHHHHHHHH
Q psy14882 161 KNYVLLLKELREAF 174 (743)
Q Consensus 161 ~nfv~LLkeLR~~L 174 (743)
+...++++++|+.+
T Consensus 148 ~~~~eiv~~vr~~~ 161 (289)
T cd02810 148 EAVANLLKAVKAAV 161 (289)
T ss_pred HHHHHHHHHHHHcc
Confidence 45556677776654
No 70
>PLN02877 alpha-amylase/limit dextrinase
Probab=62.61 E-value=52 Score=41.61 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHH
Q psy14882 125 RYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 125 ~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~ 177 (743)
+.-|+-+++++.-|+++|++||+-||--.-.. .+ .|+++|++|++.
T Consensus 534 ~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~---~~----tm~~~~~~L~~i 579 (970)
T PLN02877 534 YMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLM---KR----TMVRAKDALQSL 579 (970)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEcccccc---HH----HHHHHHHHHHHH
Confidence 55688899999999999999999999764332 22 455556555554
No 71
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=61.67 E-value=14 Score=43.76 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeeeeecc--------CCCCC--ccHHHHHHHHHHHHHHHH
Q psy14882 123 KSRYSRQTFIYSAVPFLRQRNFDGLDIDWE--------YPAGT--DDKKNYVLLLKELREAFE 175 (743)
Q Consensus 123 s~~~~R~~FI~sIv~~lk~ygfDGVDIDWE--------yP~~~--~dk~nfv~LLkeLR~~L~ 175 (743)
.++..|+-+++++.+.++..||||+.||=- +.+.. .-...|..||++++++++
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~ 300 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALP 300 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCC
Confidence 477899999999999999999999999932 22211 226789999999999884
No 72
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=61.40 E-value=74 Score=35.42 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhCCCCeeeeec
Q psy14882 127 SRQTFIYSAVPFLRQRNFDGLDIDW 151 (743)
Q Consensus 127 ~R~~FI~sIv~~lk~ygfDGVDIDW 151 (743)
-.+.|++.... +++-|||||+|..
T Consensus 135 i~~~f~~aA~~-a~~aGfDgVeih~ 158 (353)
T cd02930 135 TIEDFARCAAL-AREAGYDGVEIMG 158 (353)
T ss_pred HHHHHHHHHHH-HHHcCCCEEEEec
Confidence 44566665554 4557999999976
No 73
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=55.57 E-value=41 Score=32.39 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=25.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHhCCCCeeeeec
Q psy14882 121 MSKSRYSRQTFIYSAVPFLRQRNFDGLDIDW 151 (743)
Q Consensus 121 ~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDW 151 (743)
.--|..-|+-++..|.+++++|.+|||=|||
T Consensus 102 ~c~ns~Y~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 102 CCLNSPYREFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred cCCCccHHHHHHHHHHHHHHcCCCCEEEecC
Confidence 3345567788899999999999999999886
No 74
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=55.47 E-value=63 Score=41.59 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHhCCCcEEEEEE-cCCC-----CC---chhhh---------------h-hcCCHHHHHHHHHHHHHHHH
Q psy14882 86 VGLYERIEQLKKANPKLKTLLAI-GGWS-----FG---TQKFK---------------E-MSKSRYSRQTFIYSAVPFLR 140 (743)
Q Consensus 86 ~g~~~~l~~LK~~nP~lKVllSI-GGw~-----~s---s~~fs---------------~-~ls~~~~R~~FI~sIv~~lk 140 (743)
.++.+.+.+|+++ +++||+-| -..+ |. +..|. . -..++..|+-+++++.-+++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 4566667777776 89999876 1111 00 00000 0 11246778999999999999
Q ss_pred hCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHH
Q psy14882 141 QRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 141 ~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~ 177 (743)
+|++||+-||.-. .-+. .+|++++.++++.
T Consensus 633 ey~VDGFRfDl~g---~~d~----~~~~~~~~~l~~~ 662 (1111)
T TIGR02102 633 EFKVDGFRFDMMG---DHDA----ASIEIAYKEAKAI 662 (1111)
T ss_pred hcCCcEEEEeccc---cCCH----HHHHHHHHHHHHh
Confidence 9999999999642 1233 3566666666554
No 75
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=54.75 E-value=76 Score=34.14 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCC-------cc
Q psy14882 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT-------DD 159 (743)
Q Consensus 87 g~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~-------~d 159 (743)
.+.+.+...++. .+..++++|+|.. .+.|++ +...+++.|+|+|+|++--|... .+
T Consensus 76 ~~~~~~~~~~~~-~~~p~ivsi~g~~---------------~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~ 138 (296)
T cd04740 76 AFLEELLPWLRE-FGTPVIASIAGST---------------VEEFVE-VAEKLADAGADAIELNISCPNVKGGGMAFGTD 138 (296)
T ss_pred HHHHHHHHHhhc-CCCcEEEEEecCC---------------HHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCcccccCC
Confidence 455666665543 3688999998733 223443 44456777999999998766532 23
Q ss_pred HHHHHHHHHHHHHHH
Q psy14882 160 KKNYVLLLKELREAF 174 (743)
Q Consensus 160 k~nfv~LLkeLR~~L 174 (743)
.+.+.++++++|+..
T Consensus 139 ~~~~~eiv~~vr~~~ 153 (296)
T cd04740 139 PEAVAEIVKAVKKAT 153 (296)
T ss_pred HHHHHHHHHHHHhcc
Confidence 344555666666543
No 76
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=54.13 E-value=46 Score=37.83 Aligned_cols=56 Identities=20% Similarity=0.390 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHhCCCcEEEEEEcC-CCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC
Q psy14882 85 KVGLYERIEQLKKANPKLKTLLAIGG-WSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG 156 (743)
Q Consensus 85 ~~g~~~~l~~LK~~nP~lKVllSIGG-w~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~ 156 (743)
...+.+.+..+|++.|++.++.||.| .+ .+.|.. ++..+++.|.|+|+|++-.|..
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s--~~~~~~--------------~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYN--KDAWEE--------------IIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCC--HHHHHH--------------HHHHHHhcCCCEEEEECCCCCC
Confidence 44567778888888888999999954 33 233332 3344677899999999987764
No 77
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.96 E-value=3.4e+02 Score=29.94 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhCCCCeeeeeccC---------CCCC-------ccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14882 127 SRQTFIYSAVPFLRQRNFDGLDIDWEY---------PAGT-------DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTA 190 (743)
Q Consensus 127 ~R~~FI~sIv~~lk~ygfDGVDIDWEy---------P~~~-------~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSi 190 (743)
..+.|++... .+++.|||||+|.--+ |... ..-+|-..|+.|+-+++++. -++++.|.+
T Consensus 147 ~i~~~~~aA~-ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~a----vG~d~~v~v 221 (338)
T cd04733 147 VIDRFAHAAR-LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAA----VGPGFPVGI 221 (338)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHH----cCCCCeEEE
Confidence 4566776554 4677899999998654 3311 12344444444444444332 133567777
Q ss_pred eccCCCCCCCCCCCc-------cccccc-cceEEeee
Q psy14882 191 AVPVGPDNIKGGYDV-------PAVAGY-LDFINLMA 219 (743)
Q Consensus 191 Avpa~~~~~~~~yd~-------~~L~~~-vDfInlMt 219 (743)
-+.+. +....+++. +.|.+. +|+|.|..
T Consensus 222 ris~~-~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 222 KLNSA-DFQRGGFTEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred EEcHH-HcCCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 76542 111223332 234443 78888754
No 78
>PRK10785 maltodextrin glucosidase; Provisional
Probab=51.33 E-value=1.5e+02 Score=35.69 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=36.9
Q ss_pred CCHHHHHHHHH---H-HHHHHHh-CCCCeeeeeccCCCC-CccHHHHHHHHHHHHHHHHHH
Q psy14882 123 KSRYSRQTFIY---S-AVPFLRQ-RNFDGLDIDWEYPAG-TDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 123 s~~~~R~~FI~---s-Iv~~lk~-ygfDGVDIDWEyP~~-~~dk~nfv~LLkeLR~~L~~~ 177 (743)
.+++-|+.+++ + +..+|++ +|+||.-||--.-.. .........|++++|+++++.
T Consensus 303 ~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~ 363 (598)
T PRK10785 303 QSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEE 363 (598)
T ss_pred CCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhh
Confidence 36788888886 3 4457776 899999999531111 111223457999999998765
No 79
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=49.99 E-value=97 Score=33.47 Aligned_cols=70 Identities=11% Similarity=0.171 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCC-CCeeeeeccCCCCC-------cc
Q psy14882 88 LYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRN-FDGLDIDWEYPAGT-------DD 159 (743)
Q Consensus 88 ~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~yg-fDGVDIDWEyP~~~-------~d 159 (743)
+.+.+...+++. +..++++|+|.+ .+.|++ +...+++.| +|||+|+.--|... .+
T Consensus 79 ~~~~~~~~~~~~-~~p~i~si~g~~---------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~ 141 (301)
T PRK07259 79 FIEEELPWLEEF-DTPIIANVAGST---------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTD 141 (301)
T ss_pred HHHHHHHHHhcc-CCcEEEEeccCC---------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccC
Confidence 445555544333 678999998843 123443 344467888 99999988555421 23
Q ss_pred HHHHHHHHHHHHHHH
Q psy14882 160 KKNYVLLLKELREAF 174 (743)
Q Consensus 160 k~nfv~LLkeLR~~L 174 (743)
.+...++++++|+..
T Consensus 142 ~~~~~eiv~~vr~~~ 156 (301)
T PRK07259 142 PELAYEVVKAVKEVV 156 (301)
T ss_pred HHHHHHHHHHHHHhc
Confidence 445556666666544
No 80
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=47.80 E-value=4.1e+02 Score=29.56 Aligned_cols=87 Identities=20% Similarity=0.301 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCeeeeecc--C-------CCC--C-----ccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q psy14882 126 YSRQTFIYSAVPFLRQRNFDGLDIDWE--Y-------PAG--T-----DDKKNYVLLLKELREAFEAEAQEVKKPRLLLT 189 (743)
Q Consensus 126 ~~R~~FI~sIv~~lk~ygfDGVDIDWE--y-------P~~--~-----~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLS 189 (743)
+-.+.|++.... +++-|||||+|..- | |.. . ..-+|=..|+.|+-+++++. -++++.|.
T Consensus 138 ~ii~~f~~AA~r-a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~----vg~~~~v~ 212 (343)
T cd04734 138 EIIAAFADAARR-CQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAA----VGPDFIVG 212 (343)
T ss_pred HHHHHHHHHHHH-HHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHH----cCCCCeEE
Confidence 345667765554 45579999999983 2 211 0 12233334444444444332 12356677
Q ss_pred EeccCCCCCCCCCCCc-------cccccc--cceEEee
Q psy14882 190 AAVPVGPDNIKGGYDV-------PAVAGY--LDFINLM 218 (743)
Q Consensus 190 iAvpa~~~~~~~~yd~-------~~L~~~--vDfInlM 218 (743)
+-+..... ...+.+. +.|.+. +|+|.|-
T Consensus 213 iRl~~~~~-~~~G~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 213 IRISGDED-TEGGLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred EEeehhhc-cCCCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 77665322 1223322 344443 7999984
No 81
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.60 E-value=3.4e+02 Score=30.20 Aligned_cols=90 Identities=18% Similarity=0.309 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhCCCCeeeeeccC---------CCCC-------ccHHHHH----HHHHHHHHHHHHHHhhcCCCcE
Q psy14882 127 SRQTFIYSAVPFLRQRNFDGLDIDWEY---------PAGT-------DDKKNYV----LLLKELREAFEAEAQEVKKPRL 186 (743)
Q Consensus 127 ~R~~FI~sIv~~lk~ygfDGVDIDWEy---------P~~~-------~dk~nfv----~LLkeLR~~L~~~~~~~~~~~~ 186 (743)
-.+.|++.... +++-|||||+|..-+ |... ..-+|=. +.|+++|+++... -.+++
T Consensus 142 ii~~f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~----~~~~~ 216 (353)
T cd04735 142 IIDAFGEATRR-AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKH----ADKDF 216 (353)
T ss_pred HHHHHHHHHHH-HHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccc----cCCCc
Confidence 45667766655 456799999998632 3210 1223433 4455555554310 01366
Q ss_pred EEEEeccCCCCCCCCCCC------c-cccccc-cceEEeeeccC
Q psy14882 187 LLTAAVPVGPDNIKGGYD------V-PAVAGY-LDFINLMAYDF 222 (743)
Q Consensus 187 lLSiAvpa~~~~~~~~yd------~-~~L~~~-vDfInlMtYD~ 222 (743)
.|.+-+..... ...+.+ + ..|.+. +|+|.|....+
T Consensus 217 ~v~~R~s~~~~-~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 217 ILGYRFSPEEP-EEPGIRMEDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred eEEEEECcccc-cCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc
Confidence 77777665321 112322 2 233333 89999866443
No 82
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=44.56 E-value=62 Score=36.74 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEcC----------CCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC
Q psy14882 87 GLYERIEQLKKANPKLKTLLAIGG----------WSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG 156 (743)
Q Consensus 87 g~~~~l~~LK~~nP~lKVllSIGG----------w~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~ 156 (743)
+....+.++|++ ++..++.+-. ...+...-..-+ .+..++.|+.=|++.++.+.=.||.|++--|.+
T Consensus 105 gQrwfL~~Ak~r--GV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NL-k~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~N 181 (384)
T PF14587_consen 105 GQRWFLKAAKER--GVNIFEAFSNSPPWWMTKNGSASGGDDGSDNL-KPDNYDAFADYLADVVKHYKKWGINFDYISPFN 181 (384)
T ss_dssp HHHHHHHHHHHT--T---EEEE-SSS-GGGSSSSSSB-S-SSS-SS--TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S
T ss_pred HHHHHHHHHHHc--CCCeEEEeecCCCHHHhcCCCCCCCCcccccc-ChhHHHHHHHHHHHHHHHHHhcCCccceeCCcC
Confidence 334455566665 8888887721 111111001122 235788888888888888866899998643432
Q ss_pred --------------CccHHHHHHHHHHHHHHHHHHH
Q psy14882 157 --------------TDDKKNYVLLLKELREAFEAEA 178 (743)
Q Consensus 157 --------------~~dk~nfv~LLkeLR~~L~~~~ 178 (743)
.-+.+....||++|+.+|.+.+
T Consensus 182 EP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~G 217 (384)
T PF14587_consen 182 EPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRG 217 (384)
T ss_dssp -TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 1245677899999999999873
No 83
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=43.36 E-value=1e+02 Score=37.78 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCC--ccHHHHHHHHHHHHH
Q psy14882 124 SRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT--DDKKNYVLLLKELRE 172 (743)
Q Consensus 124 ~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~--~dk~nfv~LLkeLR~ 172 (743)
++..|+-+++++.-+++++|+||+-||.-.-... .+......|+++|++
T Consensus 315 ~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 315 HPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 6778888999999999999999999996422211 111123456666664
No 84
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=41.52 E-value=1.6e+02 Score=33.48 Aligned_cols=72 Identities=13% Similarity=0.261 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCC----------
Q psy14882 88 LYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT---------- 157 (743)
Q Consensus 88 ~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~---------- 157 (743)
..+.+..+++..++..++++|.|.. +. +.|+ .++..+++.++|+|||+.-.|...
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~g~~-~~-------------~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~ 150 (420)
T PRK08318 86 NLREIRRVKRDYPDRALIASIMVEC-NE-------------EEWK-EIAPLVEETGADGIELNFGCPHGMSERGMGSAVG 150 (420)
T ss_pred HHHHHHHHHhhCCCceEEEEeccCC-CH-------------HHHH-HHHHHHHhcCCCEEEEeCCCCCCccccCCccccc
Confidence 3455556666555677889998741 11 1222 344455677899999999988621
Q ss_pred ccHHHHHHHHHHHHHHH
Q psy14882 158 DDKKNYVLLLKELREAF 174 (743)
Q Consensus 158 ~dk~nfv~LLkeLR~~L 174 (743)
.+.+.+.++++++++..
T Consensus 151 ~~~~~~~~i~~~v~~~~ 167 (420)
T PRK08318 151 QVPELVEMYTRWVKRGS 167 (420)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 45667777777777653
No 85
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=40.38 E-value=1.8e+02 Score=32.80 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhCCCCeeeeeccC---------CCC-------CccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14882 127 SRQTFIYSAVPFLRQRNFDGLDIDWEY---------PAG-------TDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTA 190 (743)
Q Consensus 127 ~R~~FI~sIv~~lk~ygfDGVDIDWEy---------P~~-------~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSi 190 (743)
-.+.|++.... +++-|||||+|.--+ |.. ...-+|=..|+.|+-+++++. -++++.|.+
T Consensus 142 ii~~f~~AA~~-a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~----vG~d~~v~v 216 (361)
T cd04747 142 VIAAFARAAAD-ARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAA----VGPDFPIIL 216 (361)
T ss_pred HHHHHHHHHHH-HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH----cCCCCeEEE
Confidence 34566665544 455699999999765 332 123456566666666666553 134677777
Q ss_pred eccC
Q psy14882 191 AVPV 194 (743)
Q Consensus 191 Avpa 194 (743)
-+..
T Consensus 217 Ris~ 220 (361)
T cd04747 217 RFSQ 220 (361)
T ss_pred EECc
Confidence 7764
No 86
>KOG2091|consensus
Probab=38.45 E-value=13 Score=40.76 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=24.8
Q ss_pred CCccccccccceEEeeeccCCCCCCcccccCCCCC
Q psy14882 203 YDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLR 237 (743)
Q Consensus 203 yd~~~L~~~vDfInlMtYD~~G~w~~~~g~~Spl~ 237 (743)
-++..|...+|.+.+|||||.+. ...|+++|+.
T Consensus 244 ee~~~L~~~~d~fsLmTYd~s~~--~~pg~nap~~ 276 (392)
T KOG2091|consen 244 EEFSKLVAVYDGFSLMTYDYSLV--QGPGPNAPLE 276 (392)
T ss_pred HHHHHHHHhhhheeEEEeecccc--cCCCCCCCHH
Confidence 36778899999999999999863 2235666654
No 87
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=38.38 E-value=2.4e+02 Score=30.60 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCC----------
Q psy14882 88 LYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT---------- 157 (743)
Q Consensus 88 ~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~---------- 157 (743)
+.+.+..+++..++..++.+|-|.. +. +.|++ +++.+++.++|+|||++-.|...
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~G~~-~~-------------~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~ 150 (299)
T cd02940 86 WLKEIRELKKDFPDKILIASIMCEY-NK-------------EDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAVG 150 (299)
T ss_pred HHHHHHHHHhhCCCCeEEEEecCCC-CH-------------HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhc
Confidence 4455666766655677889997631 11 23333 33455677899999999888641
Q ss_pred ccHHHHHHHHHHHHHHH
Q psy14882 158 DDKKNYVLLLKELREAF 174 (743)
Q Consensus 158 ~dk~nfv~LLkeLR~~L 174 (743)
.+.+.+.++++.+|+..
T Consensus 151 ~~~~~~~~iv~~v~~~~ 167 (299)
T cd02940 151 QDPELVEEICRWVREAV 167 (299)
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 35566777777776643
No 88
>PRK03705 glycogen debranching enzyme; Provisional
Probab=38.26 E-value=1e+02 Score=37.53 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeeeeecc
Q psy14882 123 KSRYSRQTFIYSAVPFLRQRNFDGLDIDWE 152 (743)
Q Consensus 123 s~~~~R~~FI~sIv~~lk~ygfDGVDIDWE 152 (743)
.++..|+-+++++.-+++++|+||+-||--
T Consensus 309 ~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 309 SHPAVVDWAIDCLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCEEEEEcH
Confidence 367889999999999999999999999964
No 89
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=37.86 E-value=5e+02 Score=30.69 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCeeeeec-cCCC----C-CccHHHHHHHHHHHHHHHHHH
Q psy14882 124 SRYSRQTFIYSAVPFLRQRNFDGLDIDW-EYPA----G-TDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 124 ~~~~R~~FI~sIv~~lk~ygfDGVDIDW-EyP~----~-~~dk~nfv~LLkeLR~~L~~~ 177 (743)
+++.|+.+++.+..+++ +|+||+-||- .+-. . ..+...-..|++++|+.+++.
T Consensus 172 np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~ 230 (539)
T TIGR02456 172 NPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDRE 230 (539)
T ss_pred CHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHh
Confidence 67788888887777776 8999999994 2211 0 011112246889999888764
No 90
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=37.78 E-value=5.9e+02 Score=28.31 Aligned_cols=85 Identities=20% Similarity=0.251 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhCCCCeeeeeccC---------CCC--C-----ccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14882 127 SRQTFIYSAVPFLRQRNFDGLDIDWEY---------PAG--T-----DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTA 190 (743)
Q Consensus 127 ~R~~FI~sIv~~lk~ygfDGVDIDWEy---------P~~--~-----~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSi 190 (743)
-.+.|++.... +++-|||||+|.--+ |.. . ..-+|=..|+.|+-+++++.- ++.|.+
T Consensus 140 ii~~f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~------~~~v~v 212 (337)
T PRK13523 140 TVLAFKQAAVR-AKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW------DGPLFV 212 (337)
T ss_pred HHHHHHHHHHH-HHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc------CCCeEE
Confidence 45667765544 556799999998663 321 0 134455556655555555431 233555
Q ss_pred eccCCCCCCCCCCCc-------cccccc-cceEEeee
Q psy14882 191 AVPVGPDNIKGGYDV-------PAVAGY-LDFINLMA 219 (743)
Q Consensus 191 Avpa~~~~~~~~yd~-------~~L~~~-vDfInlMt 219 (743)
-+.+.. ....+++. +.|.+. +|+|+|-.
T Consensus 213 Ris~~d-~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 213 RISASD-YHPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred Eecccc-cCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 544321 12223332 233332 79999853
No 91
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.97 E-value=3.2e+02 Score=30.25 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=60.1
Q ss_pred CCCCCCcEEEEEEeCCccccccCC---CCCCCCCCC-CCccEEEEeeEEeeCC-CeeeccCCCccccchhhHH-HHHHHH
Q psy14882 22 SKPERLLEVVCYYTNWSQYRTKIG---KFQPEDIEP-DLCTHIIFAFGWLKKG-KLSSFESNDETKDGKVGLY-ERIEQL 95 (743)
Q Consensus 22 ~~~~~~~~VvgYy~~W~~~~~~~~---~f~~~~Ip~-~~~THIiyaFa~i~~~-~~~sf~~~~~~~d~~~g~~-~~l~~L 95 (743)
+.....+..+|-|.+-+..+...+ .-...+.+. .....|=|+-..+..+ +.+.+....++.+.....+ .....+
T Consensus 95 SVDtKkkeliG~~~~~G~~~~~~~~p~~v~~hDf~~~~~gk~~PyGiyd~~~n~g~v~vg~s~dTa~Fav~~i~~WW~~~ 174 (311)
T PF07592_consen 95 SVDTKKKELIGNFKRGGKEWRPKGDPEEVNDHDFPSKALGKAIPYGIYDPAANEGWVSVGTSHDTADFAVDSIRRWWEEM 174 (311)
T ss_pred EEecccceecCCcCCCCceecccCCCCcccccCCCCcccceeccceeEeccCCeEEEEEecCcccHHHHHHHHHHHHHHh
Confidence 333456788998877654332111 111112221 2345555665555544 3445544444433322222 234455
Q ss_pred -HHhCCCcEEE-EEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCC
Q psy14882 96 -KKANPKLKTL-LAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNF 144 (743)
Q Consensus 96 -K~~nP~lKVl-lSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygf 144 (743)
+.++|+.+-| |...|.. +|...|..|...|.+|..+.|+
T Consensus 175 g~~~yp~a~~lli~~D~Gg----------sN~~r~r~wk~~L~~la~~~gl 215 (311)
T PF07592_consen 175 GKARYPHAKRLLITADNGG----------SNGSRRRLWKKRLQELADETGL 215 (311)
T ss_pred ChhhcCchheEEEeccCCC----------CccchhHHHHHHHHHHHHHhCC
Confidence 7889987544 4442222 1345678899999999999865
No 92
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=34.70 E-value=4.1e+02 Score=29.39 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhCCCCeeeeeccC---------CCC-------CccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14882 127 SRQTFIYSAVPFLRQRNFDGLDIDWEY---------PAG-------TDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTA 190 (743)
Q Consensus 127 ~R~~FI~sIv~~lk~ygfDGVDIDWEy---------P~~-------~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSi 190 (743)
-.+.|++..... ++-|||||+|.--+ |.. ..+.+|=..|+.|+-+++++.- ++++.|.+
T Consensus 147 ii~~f~~AA~~A-~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~v----g~d~~v~~ 221 (341)
T PF00724_consen 147 IIEDFAQAARRA-KEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAV----GPDFPVGV 221 (341)
T ss_dssp HHHHHHHHHHHH-HHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHH----TGGGEEEE
T ss_pred HHHHHHHHHHHH-HHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHh----cCCceEEE
Confidence 345566665554 44799999998753 111 1234555555555555554431 23677777
Q ss_pred eccCC
Q psy14882 191 AVPVG 195 (743)
Q Consensus 191 Avpa~ 195 (743)
-+++.
T Consensus 222 Rls~~ 226 (341)
T PF00724_consen 222 RLSPD 226 (341)
T ss_dssp EEETT
T ss_pred EEeee
Confidence 77654
No 93
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=33.71 E-value=2.4e+02 Score=30.85 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCC-CCeeeeeccCCCCC------c
Q psy14882 86 VGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRN-FDGLDIDWEYPAGT------D 158 (743)
Q Consensus 86 ~g~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~yg-fDGVDIDWEyP~~~------~ 158 (743)
..+.+++..+++..++..++.||-|.+ ...|. .+.+.++..+ .|.|+|+.-.|... .
T Consensus 77 ~~~~~~i~~~~~~~~~~pvI~Si~G~~--~~~~~--------------~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~ 140 (310)
T PRK02506 77 DYYLDYVLELQKKGPNKPHFLSVVGLS--PEETH--------------TILKKIQASDFNGLVELNLSCPNVPGKPQIAY 140 (310)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCc--HHHHH--------------HHHHHHhhcCCCCEEEEECCCCCCCCcccccc
Confidence 345677777776655788999997744 22222 2233455677 79999999877421 2
Q ss_pred cHHHHHHHHHHHHHHH
Q psy14882 159 DKKNYVLLLKELREAF 174 (743)
Q Consensus 159 dk~nfv~LLkeLR~~L 174 (743)
|.+.+.++++.+|+..
T Consensus 141 d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 141 DFETTEQILEEVFTYF 156 (310)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 4566777777777654
No 94
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=33.52 E-value=2.3e+02 Score=31.31 Aligned_cols=71 Identities=18% Similarity=0.293 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCc------cH
Q psy14882 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTD------DK 160 (743)
Q Consensus 87 g~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~------dk 160 (743)
.+.+.+..++++. ++.++++|+|.+ .. .+ ..++..+++.|+|+|+|++-.|.... ..
T Consensus 88 ~~~~~i~~~~~~~-~~pvi~sI~g~~--~~-------------e~-~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~ 150 (334)
T PRK07565 88 EYLELIRRAKEAV-DIPVIASLNGSS--AG-------------GW-VDYARQIEQAGADALELNIYYLPTDPDISGAEVE 150 (334)
T ss_pred HHHHHHHHHHHhc-CCcEEEEeccCC--HH-------------HH-HHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHH
Confidence 3455666666543 688999998843 11 22 23445567779999999986543221 12
Q ss_pred HHHHHHHHHHHHHH
Q psy14882 161 KNYVLLLKELREAF 174 (743)
Q Consensus 161 ~nfv~LLkeLR~~L 174 (743)
+.+.++++++|+..
T Consensus 151 ~~~~eil~~v~~~~ 164 (334)
T PRK07565 151 QRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHhcc
Confidence 34566667666544
No 95
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=33.48 E-value=2.2e+02 Score=30.87 Aligned_cols=74 Identities=9% Similarity=0.076 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHhC--CCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhC--CCCeeeeeccCCCC----
Q psy14882 85 KVGLYERIEQLKKAN--PKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQR--NFDGLDIDWEYPAG---- 156 (743)
Q Consensus 85 ~~g~~~~l~~LK~~n--P~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~y--gfDGVDIDWEyP~~---- 156 (743)
...+.+++..++++. ++.-+++||+|. .+ .+++.+..+.+.. +.|+|||+.--|..
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~pvivsi~g~---~~-------------~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~ 136 (294)
T cd04741 73 LDYYLEYIRTISDGLPGSAKPFFISVTGS---AE-------------DIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKP 136 (294)
T ss_pred HHHHHHHHHHHhhhccccCCeEEEECCCC---HH-------------HHHHHHHHHHhhccccccEEEEECCCCCCCCcc
Confidence 334566666666542 467789999873 11 2333233333322 68999999987763
Q ss_pred --CccHHHHHHHHHHHHHHH
Q psy14882 157 --TDDKKNYVLLLKELREAF 174 (743)
Q Consensus 157 --~~dk~nfv~LLkeLR~~L 174 (743)
..+.+.+.++++.+|+..
T Consensus 137 ~~~~~~~~~~~i~~~v~~~~ 156 (294)
T cd04741 137 PPAYDFDATLEYLTAVKAAY 156 (294)
T ss_pred cccCCHHHHHHHHHHHHHhc
Confidence 135667777777777765
No 96
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=33.19 E-value=85 Score=35.64 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=50.8
Q ss_pred HHHHhCCCcEEEEEE-------cCCCCCchhhhhhcC-CHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC-CccHHHHH
Q psy14882 94 QLKKANPKLKTLLAI-------GGWSFGTQKFKEMSK-SRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG-TDDKKNYV 164 (743)
Q Consensus 94 ~LK~~nP~lKVllSI-------GGw~~ss~~fs~~ls-~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~-~~dk~nfv 164 (743)
...++| ++-|+=.| ||. .+.+..|+. +++-.=-|++.+++..+.|||||-=|+=|--+. .++.++..
T Consensus 134 DaaHrN-GVPvlGt~Ffppk~ygg~---~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M~ 209 (553)
T COG4724 134 DAAHRN-GVPVLGTLFFPPKNYGGD---QEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKMR 209 (553)
T ss_pred hhhhcC-CCceeeeeecChhhcCch---HHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHHH
Confidence 344444 88888665 442 345666664 444455689999999999999999999885443 35566666
Q ss_pred HHHHHHHH
Q psy14882 165 LLLKELRE 172 (743)
Q Consensus 165 ~LLkeLR~ 172 (743)
+||.-+++
T Consensus 210 ~f~ly~ke 217 (553)
T COG4724 210 QFMLYSKE 217 (553)
T ss_pred HHHHHHHh
Confidence 66666554
No 97
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=32.98 E-value=69 Score=38.80 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCcEEEEEE---cCCCCCchhhhhhcCCHHHHHHH-HHHHHHHHHhCCCCeeeeeccCCCCCccHHHHH
Q psy14882 89 YERIEQLKKANPKLKTLLAI---GGWSFGTQKFKEMSKSRYSRQTF-IYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYV 164 (743)
Q Consensus 89 ~~~l~~LK~~nP~lKVllSI---GGw~~ss~~fs~~ls~~~~R~~F-I~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv 164 (743)
+..+.++|++||++|+.+.= =||--. .+..-..++..-... ++=|+..-+.| |+||||--+.+ | +..=.
T Consensus 115 ~~L~~eAKkrNP~ikl~~L~W~~PgW~~~--g~~~~~~~~~~~a~Y~~~wl~ga~~~~---gl~idYvg~~N-E-r~~~~ 187 (669)
T PF02057_consen 115 WWLMAEAKKRNPNIKLYGLPWGFPGWVGN--GWNWPYDNPQLTAYYVVSWLLGAKKTH---GLDIDYVGIWN-E-RGFDV 187 (669)
T ss_dssp HHHHHHHHHH-TT-EEEEEES-B-GGGGT--TSS-TTSSHHHHHHHHHHHHHHHHHHH--------EE-S-T-T-S---H
T ss_pred hhhHHHHHhhCCCCeEEEeccCCCccccC--CCCCcccchhhhhHHHHHHHHHHHHHh---CCCceEechhh-c-cCCCh
Confidence 45678999999999988543 233311 111111122222222 22233333555 55677653322 2 22224
Q ss_pred HHHHHHHHHHHHH
Q psy14882 165 LLLKELREAFEAE 177 (743)
Q Consensus 165 ~LLkeLR~~L~~~ 177 (743)
..++.||..|++.
T Consensus 188 ~~ik~lr~~l~~~ 200 (669)
T PF02057_consen 188 NYIKWLRKALNSN 200 (669)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhc
Confidence 6789999999875
No 98
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=31.48 E-value=56 Score=28.87 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=28.5
Q ss_pred hhhhhcCC-HHHHHHHHHHHHHHHHhCCCCeeeeec
Q psy14882 117 KFKEMSKS-RYSRQTFIYSAVPFLRQRNFDGLDIDW 151 (743)
Q Consensus 117 ~fs~~ls~-~~~R~~FI~sIv~~lk~ygfDGVDIDW 151 (743)
.+.....+ +.-|+.+++.|++.+..-.||||-+|-
T Consensus 40 ~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 40 HYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred eeeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 33334445 889999999999999988999999984
No 99
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=30.98 E-value=2.3e+02 Score=32.35 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC----Cc---cHHHHH----HHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14882 122 SKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG----TD---DKKNYV----LLLKELREAFEAEAQEVKKPRLLLTA 190 (743)
Q Consensus 122 ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~----~~---dk~nfv----~LLkeLR~~L~~~~~~~~~~~~lLSi 190 (743)
+++++.|+-+.+.+.++++++|+|.|-+|+..... +. ....++ .|+++||+++ |+++|..
T Consensus 162 ~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~---------P~v~iE~ 232 (394)
T PF02065_consen 162 LSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARF---------PDVLIEN 232 (394)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHT---------TTSEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhC---------CCcEEEe
Confidence 35788899999999999999999999999975432 11 123333 3555555554 4677777
Q ss_pred eccC
Q psy14882 191 AVPV 194 (743)
Q Consensus 191 Avpa 194 (743)
...-
T Consensus 233 CssG 236 (394)
T PF02065_consen 233 CSSG 236 (394)
T ss_dssp -BTT
T ss_pred ccCC
Confidence 7554
No 100
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=30.96 E-value=75 Score=35.05 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhCCCCeeeeec
Q psy14882 127 SRQTFIYSAVPFLRQRNFDGLDIDW 151 (743)
Q Consensus 127 ~R~~FI~sIv~~lk~ygfDGVDIDW 151 (743)
-.+.|++.+... ++-|||||+|.-
T Consensus 152 ii~~~~~aA~~a-~~aGfDgVei~~ 175 (336)
T cd02932 152 VVDAFVAAARRA-VEAGFDVIEIHA 175 (336)
T ss_pred HHHHHHHHHHHH-HHcCCCEEEEcc
Confidence 445666655554 447999999985
No 101
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=30.68 E-value=3.2e+02 Score=33.55 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=90.4
Q ss_pred CccEEEE-eeEEeeCCCee--eccCCCccccchhhHHHHH-HHHHHhCCCcEEE--EEEcCCCCCch-------------
Q psy14882 56 LCTHIIF-AFGWLKKGKLS--SFESNDETKDGKVGLYERI-EQLKKANPKLKTL--LAIGGWSFGTQ------------- 116 (743)
Q Consensus 56 ~~THIiy-aFa~i~~~~~~--sf~~~~~~~d~~~g~~~~l-~~LK~~nP~lKVl--lSIGGw~~ss~------------- 116 (743)
..+||.+ +|+..+.+|.. .+-++ ........+|.++ =+|+.+. ++||. +-+-+|.+.+.
T Consensus 347 ~~~~VyLqafadp~gdg~~~~lYFpn-r~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~ 424 (672)
T PRK14581 347 RVTHVFLQAFSDPKGDGNIRQVYFPN-RWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDMDPSLPRITRIDPKTGK 424 (672)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEecC-CcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccCCcccchhhhcccccCc
Confidence 4688887 78888766532 22222 2234556788888 5888775 88887 33344433110
Q ss_pred ------hhhhhcC-CHHHHHHHHHHHHHHHHhC-CCCeeeeeccCCCC------------------C-------c-----
Q psy14882 117 ------KFKEMSK-SRYSRQTFIYSAVPFLRQR-NFDGLDIDWEYPAG------------------T-------D----- 158 (743)
Q Consensus 117 ------~fs~~ls-~~~~R~~FI~sIv~~lk~y-gfDGVDIDWEyP~~------------------~-------~----- 158 (743)
.+.++.- +++.| +.|.+|-+-|..| .||||=|.=+--.. + .
T Consensus 425 ~~~~~~~y~rlspf~~~~~-~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~ 503 (672)
T PRK14581 425 TSIDPDQYRRLSPFNPEVR-QRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMM 503 (672)
T ss_pred cccCCCCccccCCCCHHHH-HHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHH
Confidence 1111111 34444 5788899989887 89999885321110 0 0
Q ss_pred ------cHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCCC---CCCC--CCCccccccccceEEeeeccCC
Q psy14882 159 ------DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPD---NIKG--GYDVPAVAGYLDFINLMAYDFH 223 (743)
Q Consensus 159 ------dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSiAvpa~~~---~~~~--~yd~~~L~~~vDfInlMtYD~~ 223 (743)
....++.|-.+|++..++.. ++.+...--+.+.+- .-+. .-++..+.+..||+-+|+|=+.
T Consensus 504 ~~w~~~k~~~l~~f~~~l~~~v~~~~----~p~~~tarniya~~~l~p~~~~w~aQ~l~~~~~~yD~~a~mamp~m 575 (672)
T PRK14581 504 QRWTRYKSKYLIDFTNELTREVRDIR----GPQVKSARNIFAMPILEPESEAWFAQNLDDFLANYDWVAPMAMPLM 575 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc----CccceehhcccccccCChhHHHHHHhHHHHHHhhcchhHHhhchhh
Confidence 12345688889988887641 122221111221110 0111 1256778889999999998765
No 102
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=29.16 E-value=1.9e+02 Score=31.35 Aligned_cols=94 Identities=16% Similarity=0.225 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHH
Q psy14882 88 LYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLL 167 (743)
Q Consensus 88 ~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LL 167 (743)
+-+-+.-.|++ +++|+|-.--.+.. .... -.+. .+.+...++++|+.||-|||- ..+.+..+++.
T Consensus 75 l~elv~Ya~~K--gVgi~lw~~~~~~~--~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~----~~d~Q~~v~~y 139 (273)
T PF10566_consen 75 LPELVDYAKEK--GVGIWLWYHSETGG--NVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFM----DRDDQEMVNWY 139 (273)
T ss_dssp HHHHHHHHHHT--T-EEEEEEECCHTT--BHHH------HHCC-HHHHHHHHHHCTEEEEEEE------SSTSHHHHHHH
T ss_pred HHHHHHHHHHc--CCCEEEEEeCCcch--hhHh------HHHH-HHHHHHHHHHcCCCEEeeCcC----CCCCHHHHHHH
Confidence 33444455555 89998877321111 0111 1222 377889999999999999987 23455556666
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEeccCCCCCCCCCC
Q psy14882 168 KELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGY 203 (743)
Q Consensus 168 keLR~~L~~~~~~~~~~~~lLSiAvpa~~~~~~~~y 203 (743)
+++-+..-+. +++|-.-=+..+..+.+-|
T Consensus 140 ~~i~~~AA~~-------~LmvnfHg~~kPtG~~RTy 168 (273)
T PF10566_consen 140 EDILEDAAEY-------KLMVNFHGATKPTGLRRTY 168 (273)
T ss_dssp HHHHHHHHHT-------T-EEEETTS---TTHHHCS
T ss_pred HHHHHHHHHc-------CcEEEecCCcCCCcccccC
Confidence 6555544332 5667665554444443333
No 103
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=28.48 E-value=2.6e+02 Score=30.83 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC-Cc-----cH
Q psy14882 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG-TD-----DK 160 (743)
Q Consensus 87 g~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~-~~-----dk 160 (743)
.+.+.+..++++ .+.-|+++|.|.+ .+.| ..+...+++.|+|+|+|+.-.|.. +. ..
T Consensus 86 ~~~~~i~~~~~~-~~~pvi~si~g~~--~~~~--------------~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~ 148 (325)
T cd04739 86 EYLELIRRAKRA-VSIPVIASLNGVS--AGGW--------------VDYARQIEEAGADALELNIYALPTDPDISGAEVE 148 (325)
T ss_pred HHHHHHHHHHhc-cCCeEEEEeCCCC--HHHH--------------HHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHH
Confidence 455666666543 3678999997733 1222 234445677789999999975332 11 11
Q ss_pred HHHHHHHHHHHHHH
Q psy14882 161 KNYVLLLKELREAF 174 (743)
Q Consensus 161 ~nfv~LLkeLR~~L 174 (743)
+.+.++++.+|+..
T Consensus 149 ~~~~eiv~~v~~~~ 162 (325)
T cd04739 149 QRYLDILRAVKSAV 162 (325)
T ss_pred HHHHHHHHHHHhcc
Confidence 33455666665543
No 104
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=28.11 E-value=87 Score=34.45 Aligned_cols=93 Identities=17% Similarity=0.113 Sum_probs=51.0
Q ss_pred CcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC-----------CccHHHHHHHHHH
Q psy14882 101 KLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG-----------TDDKKNYVLLLKE 169 (743)
Q Consensus 101 ~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~-----------~~dk~nfv~LLke 169 (743)
+..+.+.|.|.+ . +.|++.+. .+.+.|||||||+.-.|.. -.+.+...+++++
T Consensus 62 e~p~~vQl~g~~--p-------------~~~~~aA~-~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~a 125 (312)
T PRK10550 62 GTLVRIQLLGQY--P-------------QWLAENAA-RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKA 125 (312)
T ss_pred CCcEEEEeccCC--H-------------HHHHHHHH-HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHH
Confidence 356888887733 1 22333332 3466799999999987752 1244455566666
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeccCCCCCCCCCCCcccc-cc-ccceEEe
Q psy14882 170 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAV-AG-YLDFINL 217 (743)
Q Consensus 170 LR~~L~~~~~~~~~~~~lLSiAvpa~~~~~~~~yd~~~L-~~-~vDfInl 217 (743)
+|+.+. .++-||+-+..+........++..+ .+ -+|.|.|
T Consensus 126 vr~~~~--------~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~V 167 (312)
T PRK10550 126 MREAVP--------AHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVV 167 (312)
T ss_pred HHHhcC--------CCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEE
Confidence 666542 1345666665543322212233222 22 3788876
No 105
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=26.86 E-value=3e+02 Score=30.65 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC-----CccHHH
Q psy14882 88 LYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG-----TDDKKN 162 (743)
Q Consensus 88 ~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~-----~~dk~n 162 (743)
+.+++...+ .++.|++||+|....+ ....-+.|+..+..+ .. +.|+|+|++--|.. .++.+.
T Consensus 127 ~~~~l~~~~---~~~pvivsI~~~~~~~--------~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~ 193 (344)
T PRK05286 127 LAERLKKAY---RGIPLGINIGKNKDTP--------LEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEA 193 (344)
T ss_pred HHHHHHHhc---CCCcEEEEEecCCCCC--------cccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHH
Confidence 344444433 4688999998853110 112233444444443 33 48999999976653 356778
Q ss_pred HHHHHHHHHHHHH
Q psy14882 163 YVLLLKELREAFE 175 (743)
Q Consensus 163 fv~LLkeLR~~L~ 175 (743)
+.++++++|+...
T Consensus 194 ~~eiv~aVr~~~~ 206 (344)
T PRK05286 194 LDELLAALKEAQA 206 (344)
T ss_pred HHHHHHHHHHHHh
Confidence 8899999998875
No 106
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=26.57 E-value=1.2e+02 Score=31.54 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHH
Q psy14882 132 IYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 132 I~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~ 177 (743)
+..+++.+++.|||||+|.+.+. .-++++++.+.+.
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~----------~~~~~l~~~l~~~ 51 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYD----------WDAEALKARLAAA 51 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc----------CCHHHHHHHHHHc
Confidence 45678888999999999976321 1357777777654
No 107
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=26.56 E-value=2e+02 Score=32.17 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=70.2
Q ss_pred HHHHHHHHHhCCCcEEEEEEcC---CC-----CCchhhhhhc--CCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCC---
Q psy14882 89 YERIEQLKKANPKLKTLLAIGG---WS-----FGTQKFKEMS--KSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPA--- 155 (743)
Q Consensus 89 ~~~l~~LK~~nP~lKVllSIGG---w~-----~ss~~fs~~l--s~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~--- 155 (743)
.+..+++|+. ++||||-+.= |. .-+..|..+- .=.+....+..++++.|+.. |+..||=..+
T Consensus 61 ~~~akrak~~--Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~---G~~pd~VQVGNEi 135 (332)
T PF07745_consen 61 IALAKRAKAA--GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA---GVTPDMVQVGNEI 135 (332)
T ss_dssp HHHHHHHHHT--T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT---T--ESEEEESSSG
T ss_pred HHHHHHHHHC--CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC---CCCccEEEeCccc
Confidence 4455556655 9999999941 11 1112232220 00134455667777777775 5666663222
Q ss_pred --------C-CccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCCCCCCCCCC-ccccccccceEEeeeccCCCC
Q psy14882 156 --------G-TDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYD-VPAVAGYLDFINLMAYDFHGK 225 (743)
Q Consensus 156 --------~-~~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSiAvpa~~~~~~~~yd-~~~L~~~vDfInlMtYD~~G~ 225 (743)
+ ..+.++|..||+.-..+.++.. ......|-++-+.....+...|+ +....--.|.|-+--|-+
T Consensus 136 n~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~---p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~--- 209 (332)
T PF07745_consen 136 NNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD---PNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPF--- 209 (332)
T ss_dssp GGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS---STSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-ST---
T ss_pred cccccCcCCCccCHHHHHHHHHHHHHHHHhcC---CCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCC---
Confidence 1 2566677777766666665531 12233444443322111110111 122233445555544443
Q ss_pred CCcccccCCCCCCCCCchHHHHHHHHHHHHHhcccccceeeeecC
Q psy14882 226 WESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRLLLTAAVP 270 (743)
Q Consensus 226 w~~~~g~~Spl~~~~~~~~~~lr~~~~~~~~~~~~~~~~lt~a~~ 270 (743)
|+. ....|+..+..+.....++-++.-.+-|
T Consensus 210 w~~--------------~l~~l~~~l~~l~~ry~K~V~V~Et~yp 240 (332)
T PF07745_consen 210 WHG--------------TLEDLKNNLNDLASRYGKPVMVVETGYP 240 (332)
T ss_dssp TST---------------HHHHHHHHHHHHHHHT-EEEEEEE---
T ss_pred Ccc--------------hHHHHHHHHHHHHHHhCCeeEEEecccc
Confidence 332 4567888888887777655444444433
No 108
>PLN03244 alpha-amylase; Provisional
Probab=26.14 E-value=1.8e+02 Score=36.32 Aligned_cols=27 Identities=11% Similarity=0.141 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCeeeee
Q psy14882 124 SRYSRQTFIYSAVPFLRQRNFDGLDID 150 (743)
Q Consensus 124 ~~~~R~~FI~sIv~~lk~ygfDGVDID 150 (743)
.++-|+-+++++.-+|++|++||+-||
T Consensus 505 ~~EVr~FLLsna~yWleEyhIDGFRfD 531 (872)
T PLN03244 505 DLDVLHFLISNLNWWITEYQIDGFQFH 531 (872)
T ss_pred CHHHHHHHHHHHHHHHHHhCcCcceee
Confidence 567899999999999999999999998
No 109
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.13 E-value=2e+02 Score=31.18 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhCCCCeeeeecc
Q psy14882 128 RQTFIYSAVPFLRQRNFDGLDIDWE 152 (743)
Q Consensus 128 R~~FI~sIv~~lk~ygfDGVDIDWE 152 (743)
.+.|++.... +++-|||||+|.--
T Consensus 140 i~~~~~aA~~-a~~aGfDgveih~~ 163 (327)
T cd02803 140 IEDFAAAARR-AKEAGFDGVEIHGA 163 (327)
T ss_pred HHHHHHHHHH-HHHcCCCEEEEcch
Confidence 3445554444 34579999999864
No 110
>PRK01060 endonuclease IV; Provisional
Probab=24.55 E-value=1.1e+02 Score=32.30 Aligned_cols=46 Identities=17% Similarity=0.029 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHHHHHHHHHH
Q psy14882 132 IYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAE 177 (743)
Q Consensus 132 I~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLkeLR~~L~~~ 177 (743)
+...++.+++.|||||+|.-+-|........-...++++|+.+.+.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~ 59 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKY 59 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHc
Confidence 4457888999999999997664432111111223477777777654
No 111
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=24.06 E-value=3.4e+02 Score=28.77 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCC
Q psy14882 88 LYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPA 155 (743)
Q Consensus 88 ~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~ 155 (743)
..+.+..||++ ++|+++.+- + .+ |+=|.+.+.+++.+.|+||+=+|+-.|.
T Consensus 68 p~~~i~~l~~~--g~~~~~~~~-----P-~v---------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 68 PKSMIDELHDN--GVKLVLWID-----P-YI---------REWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred HHHHHHHHHHC--CCEEEEEeC-----h-hH---------HHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 44667788886 899999882 1 11 7778777888878999999999985454
No 112
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=23.01 E-value=6.3e+02 Score=28.05 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCH--------H-----HHHHHHHHHHHHHHhCCCCeeeeec
Q psy14882 85 KVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSR--------Y-----SRQTFIYSAVPFLRQRNFDGLDIDW 151 (743)
Q Consensus 85 ~~g~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~--------~-----~R~~FI~sIv~~lk~ygfDGVDIDW 151 (743)
...+.+.+.+.-+++ +||+.+-...+.+....+..-.... . -.+....+|.+++.+|..|.+=+|.
T Consensus 136 krDiv~El~~A~rk~-Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg 214 (346)
T PF01120_consen 136 KRDIVGELADACRKY-GLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDG 214 (346)
T ss_dssp TS-HHHHHHHHHHHT-T-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEES
T ss_pred CCCHHHHHHHHHHHc-CCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecC
Confidence 345566665555554 9998876655442222221111111 1 1235678899999999999999997
Q ss_pred cCCCCCccHHHHHHHHHHHHH
Q psy14882 152 EYPAGTDDKKNYVLLLKELRE 172 (743)
Q Consensus 152 EyP~~~~dk~nfv~LLkeLR~ 172 (743)
-++.. .+...+..+.+.+|+
T Consensus 215 ~~~~~-~~~~~~~~~~~~i~~ 234 (346)
T PF01120_consen 215 GWPDP-DEDWDSAELYNWIRK 234 (346)
T ss_dssp TTSCC-CTHHHHHHHHHHHHH
T ss_pred CCCcc-ccccCHHHHHHHHHH
Confidence 76642 333344444444443
No 113
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=22.86 E-value=2.5e+02 Score=31.14 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHH
Q psy14882 90 ERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKE 169 (743)
Q Consensus 90 ~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLke 169 (743)
+.+..|++. ++. -+|||=.+++++....+ .-.... .=+...++.+++.||+-|.+|.-+-.+.+..+.+..-++.
T Consensus 99 e~l~~l~~~--Gvn-RiSiGvQS~~~~~L~~l-gR~~~~-~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 99 AWLKGMKNL--GVN-RISFGVQSFNEDKLKFL-GRIHSQ-KQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred HHHHHHHHc--CCC-EEEEecccCCHHHHHHc-CCCCCH-HHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHH
Confidence 667777776 555 56777767665444333 211222 3355567789999999888887763333444444444433
No 114
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=22.81 E-value=7.6e+02 Score=24.55 Aligned_cols=82 Identities=15% Similarity=-0.012 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHh-C----CCCeeeeeccCCCCCccHH
Q psy14882 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQ-R----NFDGLDIDWEYPAGTDDKK 161 (743)
Q Consensus 87 g~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~-y----gfDGVDIDWEyP~~~~dk~ 161 (743)
..++.+..+.+++ ++||+++++-+. ..|.+ .+.+....+.+.|++.|.+ | -|.|-=|-.|..... .
T Consensus 65 d~l~~~L~~A~~~-Gmkv~~Gl~~~~---~~w~~--~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~---~ 135 (166)
T PF14488_consen 65 DLLEMILDAADKY-GMKVFVGLYFDP---DYWDQ--GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYN---W 135 (166)
T ss_pred cHHHHHHHHHHHc-CCEEEEeCCCCc---hhhhc--cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcc---c
Confidence 4667777777776 999999997532 23332 4444443333334443322 3 389999999943322 2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14882 162 NYVLLLKELREAFEAE 177 (743)
Q Consensus 162 nfv~LLkeLR~~L~~~ 177 (743)
+-..+.+.|+..+++.
T Consensus 136 ~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 136 NAPERFALLGKYLKQI 151 (166)
T ss_pred chHHHHHHHHHHHHHh
Confidence 2356666777777665
No 115
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=22.62 E-value=3.3e+02 Score=30.97 Aligned_cols=71 Identities=13% Similarity=0.014 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHhCCCcEEEEEEcCCCCCchhhhhh-------cCCHHHHHH---HHHHHHHHHHhCCCCeeeeeccCC
Q psy14882 85 KVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEM-------SKSRYSRQT---FIYSAVPFLRQRNFDGLDIDWEYP 154 (743)
Q Consensus 85 ~~g~~~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~-------ls~~~~R~~---FI~sIv~~lk~ygfDGVDIDWEyP 154 (743)
...+.+.+.+.-++. +||+-+-...+.+..+.+... ...+.-.+- +..+|.++|.+||-|.+=+|+.++
T Consensus 126 krDiv~el~~A~rk~-Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~ 204 (384)
T smart00812 126 KRDLVGELADAVRKR-GLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWE 204 (384)
T ss_pred CcchHHHHHHHHHHc-CCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 345666666555444 999988776544322223211 011112222 268999999999999999998766
Q ss_pred CC
Q psy14882 155 AG 156 (743)
Q Consensus 155 ~~ 156 (743)
..
T Consensus 205 ~~ 206 (384)
T smart00812 205 AP 206 (384)
T ss_pred Cc
Confidence 43
No 116
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.80 E-value=4.6e+02 Score=28.51 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeeeeeccCC
Q psy14882 123 KSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYP 154 (743)
Q Consensus 123 s~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP 154 (743)
.+++.|+=+.+.+.+++.++|+||+=+|+-.|
T Consensus 135 tnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 135 TNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 47889998988888888899999999998544
No 117
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=21.59 E-value=3e+02 Score=28.03 Aligned_cols=61 Identities=20% Similarity=0.362 Sum_probs=37.1
Q ss_pred hCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCC-----------ccHHHHHHH
Q psy14882 98 ANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT-----------DDKKNYVLL 166 (743)
Q Consensus 98 ~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~-----------~dk~nfv~L 166 (743)
...+..++++|+|.+ .+ .|++ ....+++.|||||+|+.-.|... .+.+...++
T Consensus 51 ~~~~~p~~~qi~g~~--~~-------------~~~~-aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~ei 114 (231)
T cd02801 51 NPEERPLIVQLGGSD--PE-------------TLAE-AAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEI 114 (231)
T ss_pred CccCCCEEEEEcCCC--HH-------------HHHH-HHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHH
Confidence 344789999998843 11 2332 33345567999999997665420 234445566
Q ss_pred HHHHHHHH
Q psy14882 167 LKELREAF 174 (743)
Q Consensus 167 LkeLR~~L 174 (743)
++++|+.+
T Consensus 115 i~~v~~~~ 122 (231)
T cd02801 115 VRAVREAV 122 (231)
T ss_pred HHHHHHhc
Confidence 66666554
No 118
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=21.26 E-value=5.8e+02 Score=28.06 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=42.2
Q ss_pred CCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCC-----CccHHHHHHHHHHHHHHH
Q psy14882 100 PKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG-----TDDKKNYVLLLKELREAF 174 (743)
Q Consensus 100 P~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~-----~~dk~nfv~LLkeLR~~L 174 (743)
.+.-+++||+|....+ -.+.-+.|++.+..+ .. ..|+|+|++--|.. .++.+.+.++++++|+..
T Consensus 127 ~~~plivsi~g~~~~~--------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~ 196 (327)
T cd04738 127 RGGPLGVNIGKNKDTP--------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEER 196 (327)
T ss_pred CCCeEEEEEeCCCCCc--------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHH
Confidence 3688999998854211 112233444444443 23 38999999976643 246678888999999887
Q ss_pred H
Q psy14882 175 E 175 (743)
Q Consensus 175 ~ 175 (743)
.
T Consensus 197 ~ 197 (327)
T cd04738 197 N 197 (327)
T ss_pred h
Confidence 5
No 119
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=21.01 E-value=6.9e+02 Score=28.22 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhCCCCeeeeeccC---------CCC----C---ccHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q psy14882 127 SRQTFIYSAVPFLRQRNFDGLDIDWEY---------PAG----T---DDKKNYVLLLKELREAFEAEAQEVKKPRLLLTA 190 (743)
Q Consensus 127 ~R~~FI~sIv~~lk~ygfDGVDIDWEy---------P~~----~---~dk~nfv~LLkeLR~~L~~~~~~~~~~~~lLSi 190 (743)
-++.|++....-. +-|||||+|.=-+ |.. + ..-+|=..|+.|+-.+..+.- +..+.|.+
T Consensus 147 ii~~f~~AA~rA~-~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~v----g~~~~vg~ 221 (363)
T COG1902 147 VIEDFARAARRAK-EAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAV----GADFPVGV 221 (363)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHh----CCCceEEE
Confidence 3456666555544 4799999997532 111 0 123555555555555554431 23556777
Q ss_pred eccCCCC
Q psy14882 191 AVPVGPD 197 (743)
Q Consensus 191 Avpa~~~ 197 (743)
-+.+...
T Consensus 222 Rls~~d~ 228 (363)
T COG1902 222 RLSPDDF 228 (363)
T ss_pred EECcccc
Confidence 7776544
No 120
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=21.00 E-value=6e+02 Score=26.71 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCC-CCeeeeecc
Q psy14882 90 ERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRN-FDGLDIDWE 152 (743)
Q Consensus 90 ~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~yg-fDGVDIDWE 152 (743)
..+..+|+..|++|+++. +... .....+++.+.+-+..+.+... +|||-|-+-
T Consensus 107 ~af~~ar~~~P~a~l~~N--dy~~--------~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H 160 (254)
T smart00633 107 KAFRYAREADPDAKLFYN--DYNT--------EEPNAKRQAIYELVKKLKAKGVPIDGIGLQSH 160 (254)
T ss_pred HHHHHHHHhCCCCEEEEe--ccCC--------cCccHHHHHHHHHHHHHHHCCCccceeeeeee
Confidence 556678888999999985 2211 1112456555555555444433 799998653
No 121
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=20.79 E-value=6.1e+02 Score=27.76 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCC
Q psy14882 123 KSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPA 155 (743)
Q Consensus 123 s~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~ 155 (743)
.+++.|+=+.+.+..++.+.|+||+=+|+--|.
T Consensus 130 tnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 130 TNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 488999999999999888999999999985454
No 122
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=20.74 E-value=4.2e+02 Score=29.06 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCeeeeeccCC
Q psy14882 124 SRYSRQTFIYSAVPFLRQRNFDGLDIDWEYP 154 (743)
Q Consensus 124 ~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP 154 (743)
+++.|+-|.+.+.+.+.+.|+||+=+|+--|
T Consensus 130 np~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 130 NPEAREYYWKQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred CHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 7888888888888888899999999998544
No 123
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=20.31 E-value=3.7e+02 Score=28.86 Aligned_cols=65 Identities=14% Similarity=0.271 Sum_probs=37.6
Q ss_pred HHHHHHhCCCcEEEEEE----cCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHH
Q psy14882 92 IEQLKKANPKLKTLLAI----GGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLL 167 (743)
Q Consensus 92 l~~LK~~nP~lKVllSI----GGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LL 167 (743)
+..+++. -++.|++.| |++.++...| +..... +..+++.|.|||.|=+--+.+.-|.+....|+
T Consensus 43 i~~~~~~-~~ipv~vMIRPR~gdF~Ys~~E~----------~~M~~d-i~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li 110 (248)
T PRK11572 43 LKSVRER-VTIPVHPIIRPRGGDFCYSDGEF----------AAMLED-IATVRELGFPGLVTGVLDVDGHVDMPRMRKIM 110 (248)
T ss_pred HHHHHHh-cCCCeEEEEecCCCCCCCCHHHH----------HHHHHH-HHHHHHcCCCEEEEeeECCCCCcCHHHHHHHH
Confidence 3344443 267777777 3344444334 334444 45578889999999876555545665554444
Q ss_pred H
Q psy14882 168 K 168 (743)
Q Consensus 168 k 168 (743)
+
T Consensus 111 ~ 111 (248)
T PRK11572 111 A 111 (248)
T ss_pred H
Confidence 4
No 124
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=20.22 E-value=2.5e+02 Score=31.15 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCC
Q psy14882 123 KSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPA 155 (743)
Q Consensus 123 s~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~ 155 (743)
.|++.|+=+.+.+.+++.+.|+||+=+|+-.|.
T Consensus 135 tnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 135 LNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 478889988888888899999999999986554
No 125
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.17 E-value=3.1e+02 Score=30.51 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=45.5
Q ss_pred HHHHHHHHhCCCcEEEEEEcCCCCCchhhhhhcCCHHHHHHHHHHHHHHHHhCCCCeeeeeccCCCCCccHHHHHHHHHH
Q psy14882 90 ERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKE 169 (743)
Q Consensus 90 ~~l~~LK~~nP~lKVllSIGGw~~ss~~fs~~ls~~~~R~~FI~sIv~~lk~ygfDGVDIDWEyP~~~~dk~nfv~LLke 169 (743)
+.+..|++. ++. .++||=.+++++....+ .-....+. +...++.+++.||+-|.+|+-+-...+..+.+...++.
T Consensus 101 e~l~~l~~~--Gv~-risiGvqS~~~~~l~~l-gR~~~~~~-~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~ 175 (360)
T TIGR00539 101 EWCKGLKGA--GIN-RLSLGVQSFRDDKLLFL-GRQHSAKN-IAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKL 175 (360)
T ss_pred HHHHHHHHc--CCC-EEEEecccCChHHHHHh-CCCCCHHH-HHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHH
Confidence 566777776 543 56666666655545444 21122333 34567788889999888888765444555555555544
Q ss_pred HH
Q psy14882 170 LR 171 (743)
Q Consensus 170 LR 171 (743)
+.
T Consensus 176 ~~ 177 (360)
T TIGR00539 176 AK 177 (360)
T ss_pred HH
Confidence 44
Done!