RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14882
(743 letters)
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 397 bits (1021), Expect = e-132
Identities = 103/557 (18%), Positives = 180/557 (32%), Gaps = 168/557 (30%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDL--CTHIIFAFGWLKKGKLSSFESNDETKDGKVG 87
+VCYY + S R +GK D+E L C+H+++ + L+ L ++ N+ D
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENL-DIYKH 62
Query: 88 LYERIEQLKKANPKLKTLLAIGGWSF-----GTQKFKEMSKSRYSRQTFIYSAVPFLRQR 142
+ + LK+ P LK LL++GG + + + + FI SA ++
Sbjct: 63 QFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTY 122
Query: 143 NFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGG 202
FDGLD+ +++P K + L L + P + +
Sbjct: 123 GFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPH------AALHKEQ---- 172
Query: 203 YDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPR 262
F L+ ++++ A+
Sbjct: 173 -----------FTALVRD--------------------------VKDSLRADG------- 188
Query: 263 LLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES--QVGHNAPLRSPSSDS 320
LL+ V ++ +D+PA+ G +DF+NL +DF + + ++AP+ P
Sbjct: 189 FLLSLTVLPNVNSTWY-FDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSK 247
Query: 321 EWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY 380
+ L+ + W+ G
Sbjct: 248 DRLAHLNADFQVEYWLSQGF---------------------------------------- 267
Query: 381 EKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTISKEKLMIGMPTYGRS 440
P K+ +G+ TYG + LT SG
Sbjct: 268 ----PSNKINLGVATYGNAWKLTKD---------SGLEGVP------------------- 295
Query: 441 FTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGYV------------- 487
+ SG G + + G +SY E+C L N
Sbjct: 296 ----------VVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGNESPLRRVSD 345
Query: 488 ----WDDEMKVPYL--VHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTV 541
+ P + WV +DD S K + + GG ++ + DDF G
Sbjct: 346 PTKRFGGIAYRPVDGQITEGIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQ- 404
Query: 542 CGGDVKYPLIGAMREEL 558
C GD KYP++ A++ L
Sbjct: 405 CSGD-KYPILRAIKYRL 420
Score = 33.6 bits (77), Expect = 0.25
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 729 YKVVCYYTNWSH 740
+VCYY + S+
Sbjct: 2 SNLVCYYDSSSY 13
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG
MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB:
2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A*
2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A*
2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Length = 361
Score = 320 bits (823), Expect = e-103
Identities = 97/221 (43%), Positives = 139/221 (62%), Gaps = 8/221 (3%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLY 89
++CYYT+WSQYR G P+ I+P LCTH+I+ F + ++ ++E ND LY
Sbjct: 3 LICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEIDTWEWNDV------TLY 56
Query: 90 ERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDI 149
+ + LK NPKLKTLL++GGW+FG ++F +++ SR+TFI S PFLR FDGLD+
Sbjct: 57 DTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDL 116
Query: 150 DWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVA 209
W YP G DK++ L+KE++ F EAQ +LLL+AAV G I GYD+ ++
Sbjct: 117 AWLYP-GRRDKRHLTTLVKEMKAEFIREAQA-GTEQLLLSAAVSAGKIAIDRGYDIAQIS 174
Query: 210 GYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREA 250
+LDFI+L+ YDFHG W VGH++PL + D+ + A
Sbjct: 175 RHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNA 215
Score = 297 bits (763), Expect = 1e-94
Identities = 99/312 (31%), Positives = 149/312 (47%), Gaps = 89/312 (28%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
++ F EAQ +LLL+AAV G I GYD+ ++ +LDFI+L+ YDFHG W
Sbjct: 136 MKAEFIREAQA-GTEQLLLSAAVSAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQT 194
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
VGH++PL + D+ R + + A + +RLGA
Sbjct: 195 VGHHSPLFRGNEDASSRF-SNADYAVSYMLRLGA-------------------------- 227
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTIS 426
P KL++G+PT+GR+FTL +
Sbjct: 228 ------------------PANKLVMGIPTFGRSFTLASS--------------------- 248
Query: 427 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGY 486
K D+GAP SG G PG++T E G ++YYE+C+ L +GA
Sbjct: 249 ---------------------KTDVGAPVSGPGIPGRFTKEKGILAYYEICDFL-HGATT 286
Query: 487 VWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDV 546
+ +VPY G+QWV +DD++S++ K +LK+ GAMVW +D+DDF GT CG ++
Sbjct: 287 HRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNL 346
Query: 547 KYPLIGAMREEL 558
+PL A+++ L
Sbjct: 347 TFPLTSAVKDVL 358
Score = 33.8 bits (78), Expect = 0.19
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 729 YKVVCYYTNWSH 740
YK++CYYT+WS
Sbjct: 1 YKLICYYTSWSQ 12
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 321 bits (825), Expect = e-102
Identities = 113/221 (51%), Positives = 148/221 (66%), Gaps = 10/221 (4%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLY 89
+VCY+TNW+QYR +F P+D++P LCTH+I+AF + +LS+ E NDE LY
Sbjct: 3 LVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDE------TLY 56
Query: 90 ERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDI 149
+ LKK NPKLKTLLAIGGW+FGTQKF +M + +RQTF+ SA+ FLR+ +FDGLD+
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116
Query: 150 DWEYPAG----TDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDV 205
DWEYP DK+ + L+++L AF+ EAQ K RLLL+AAVP G + GY+V
Sbjct: 117 DWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEV 176
Query: 206 PAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQ 246
+A LDF+NLMAYDFHG WE GHN+PL +S
Sbjct: 177 DKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAA 217
Score = 306 bits (785), Expect = 8e-97
Identities = 113/314 (35%), Positives = 146/314 (46%), Gaps = 88/314 (28%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
L AF+ EAQ K RLLL+AAVP G + GY+V +A LDF+NLMAYDFHG WE
Sbjct: 141 LANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKV 200
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
GHN+PL +S L+V+ A W++ G
Sbjct: 201 TGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGT-------------------------- 234
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTIS 426
P KLI+GMPTY
Sbjct: 235 ------------------PASKLILGMPTY------------------------------ 246
Query: 427 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGY 486
GRSFTL + +GAPA+G G PG +T E G ++YYEVC GA
Sbjct: 247 -----------GRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW--KGATK 293
Query: 487 VWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDV 546
+ KVPY+ +QWVGFDD +S + K+++LK G GGAMVW +D+DDF G C
Sbjct: 294 QRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQG- 352
Query: 547 KYPLIGAMREELNG 560
+YPLI +R+EL+
Sbjct: 353 RYPLIQTLRQELSL 366
Score = 31.2 bits (71), Expect = 1.5
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 730 KVVCYYTNWSH 740
K+VCY+TNW+
Sbjct: 2 KLVCYFTNWAQ 12
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 316 bits (813), Expect = e-102
Identities = 96/216 (44%), Positives = 132/216 (61%), Gaps = 9/216 (4%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLY 89
+VCY+TNWSQ R + GKF PE+I+P LC+H+I++F ++ K+ + ++ LY
Sbjct: 4 LVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKDKSEV------MLY 57
Query: 90 ERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDI 149
+ I LK NPKLK LL+IGG+ FG++ F M S SR FI S + FLR NFDGLD+
Sbjct: 58 QTINSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDV 117
Query: 150 DWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVA 209
W YP + ++ +L+ EL EAF+ + + K RLLLTA V G I Y V +A
Sbjct: 118 SWIYP-DQKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLA 176
Query: 210 GYLDFINLMAYDFHGKWESQV--GHNAPLRSPSSDS 243
LDFINL+++DFHG WE + GHN+PL D
Sbjct: 177 KDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDR 212
Score = 301 bits (774), Expect = 3e-96
Identities = 103/317 (32%), Positives = 142/317 (44%), Gaps = 90/317 (28%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
L EAF+ + + K RLLLTA V G I Y V +A LDFINL+++DFHG WE
Sbjct: 137 LAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEKP 196
Query: 307 V--GHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGG 364
+ GHN+PL D +VE A W+ G
Sbjct: 197 LITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGM------------------------ 232
Query: 365 GEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYT 424
P EK+++G+PTYG +FTL +
Sbjct: 233 --------------------PSEKVVMGIPTYGHSFTLASA------------------- 253
Query: 425 ISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA 484
+ +GAPASG G G T +GF++YYE+C+ L GA
Sbjct: 254 -----------------------ETTVGAPASGPGAAGPITESSGFLAYYEICQFL-KGA 289
Query: 485 GYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGG 544
+ +VPY V G+QWVG+DD KS+ K+ +LK+ GGAM+W++DMDDFTG C
Sbjct: 290 KITRLQDQQVPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDDFTGKSCNQ 349
Query: 545 DVKYPLIGAMREELNGI 561
YPL+ A++ L +
Sbjct: 350 G-PYPLVQAVKRSLGSL 365
Score = 33.0 bits (76), Expect = 0.30
Identities = 9/11 (81%), Positives = 11/11 (100%)
Query: 729 YKVVCYYTNWS 739
YK+VCY+TNWS
Sbjct: 2 YKLVCYFTNWS 12
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 313 bits (805), Expect = e-100
Identities = 105/221 (47%), Positives = 146/221 (66%), Gaps = 10/221 (4%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLY 89
+ CY+TNW+QYR +G+F P+DI P LCTH+I+AF ++ ++++ E ND LY
Sbjct: 3 LTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWNDV------TLY 56
Query: 90 ERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDI 149
+ LK N +LKTLLAIGGW+FGT F M + +RQTFI S + FLRQ FDGLD
Sbjct: 57 QAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDF 116
Query: 150 DWEYPAG----TDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDV 205
DWEYP DK + +L++E+REAFE EA+++ KPRL++TAAV G NI+ GY++
Sbjct: 117 DWEYPGSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEI 176
Query: 206 PAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQ 246
P ++ YLD+I++M YD HG WE G N+PL +D+
Sbjct: 177 PQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSN 217
Score = 312 bits (801), Expect = e-100
Identities = 112/321 (34%), Positives = 151/321 (47%), Gaps = 86/321 (26%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
+REAFE EA+++ KPRL++TAAV G NI+ GY++P ++ YLD+I++M YD HG WE
Sbjct: 141 MREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGY 200
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
G N+PL +D+ L+V+ N W GA
Sbjct: 201 TGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGA-------------------------- 234
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTIS 426
P EKLI+G PTY
Sbjct: 235 ------------------PAEKLIVGFPTY------------------------------ 246
Query: 427 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGY 486
G +F L +P+ IGAP SG G G Y E+G +YYE+C L+NGA
Sbjct: 247 -----------GHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGATQ 295
Query: 487 VWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDV 546
WD +VPY G+ WVG+D+ KS K WLK N +GGAMVW +D+DDFTGT C
Sbjct: 296 GWDAPQEVPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCNQG- 354
Query: 547 KYPLIGAMREELNGIPRANNA 567
K+PLI +++ L + A
Sbjct: 355 KFPLISTLKKALGLQSASCTA 375
Score = 33.5 bits (77), Expect = 0.22
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 729 YKVVCYYTNWS 739
Y++ CY+TNW+
Sbjct: 1 YQLTCYFTNWA 11
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural
plasticity, functional versatility, immune system; 1.31A
{Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Length = 377
Score = 311 bits (800), Expect = e-100
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLY 89
++CYYT+W++ R G F+P +I+P LCTH+I+AF ++ +++ D Y
Sbjct: 3 LMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDL------RDY 56
Query: 90 ERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDI 149
E + LK N +LKTLLAIGGW FG F M + +RQ FI S + FLRQ NFDGL++
Sbjct: 57 EALNGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNL 116
Query: 150 DWEYPAG----TDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDV 205
DW+YP DK + +L+KE+R+AFE E+ E PRLLLT+ D IK GY +
Sbjct: 117 DWQYPGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKI 176
Query: 206 PAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQ 246
P ++ LD+I +M YD H + G N+PL D
Sbjct: 177 PELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKS 217
Score = 304 bits (781), Expect = 4e-97
Identities = 102/314 (32%), Positives = 138/314 (43%), Gaps = 86/314 (27%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
+R+AFE E+ E PRLLLT+ D IK GY +P ++ LD+I +M YD H +
Sbjct: 141 MRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDPKDGY 200
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
G N+PL D L+V++ + W GA
Sbjct: 201 TGENSPLYKSPYDIGKSADLNVDSIISYWKDHGA-------------------------- 234
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTIS 426
EKLI+G P Y
Sbjct: 235 ------------------ASEKLIVGFPAY------------------------------ 246
Query: 427 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGY 486
G +F L DP+K IGAP G PGKYT E+G ++YYEVC L GA
Sbjct: 247 -----------GHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEGATE 295
Query: 487 VWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDV 546
VWD +VPY G++WVG+D+ +S + K WLKDN GGA+VW +DMDDF+G+ C
Sbjct: 296 VWDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQR- 354
Query: 547 KYPLIGAMREELNG 560
+PL ++ +LN
Sbjct: 355 HFPLTSTLKGDLNI 368
Score = 33.8 bits (78), Expect = 0.18
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 729 YKVVCYYTNWSH 740
Y+++CYYT+W+
Sbjct: 1 YQLMCYYTSWAK 12
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 297 bits (762), Expect = 1e-94
Identities = 75/210 (35%), Positives = 106/210 (50%), Gaps = 9/210 (4%)
Query: 38 SQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKK--GKLSSFESNDETKDGKVGLYERIEQL 95
+ Y +F DI+ L TH+ AF L +++ +N + +
Sbjct: 7 ASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQP------KFSTFTQTV 60
Query: 96 KKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPA 155
++ NP +KTLL+IGG + M+ + SR++FI S++ R F GLD+DWEYP+
Sbjct: 61 QRRNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPS 120
Query: 156 GTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFI 215
+ N+ LL+E R A AEA KPRLLL AAV + Y V AVA LD++
Sbjct: 121 SATEMTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWV 180
Query: 216 NLMAYDFHGK-WESQVGHNAPLRSPSSDSE 244
NLMAYDF+G W G A L PS+
Sbjct: 181 NLMAYDFYGPGWSRVTGPPAALFDPSNAGP 210
Score = 273 bits (701), Expect = 1e-85
Identities = 73/317 (23%), Positives = 105/317 (33%), Gaps = 97/317 (30%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGK-WES 305
R A AEA KPRLLL AAV + Y V AVA LD++NLMAYDF+G W
Sbjct: 135 WRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYDFYGPGWSR 194
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
G A L PS+ S + W++ G
Sbjct: 195 VTGPPAALFDPSNA-----GPSGDAGTRSWIQAGL------------------------- 224
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
P +K ++G P YG + LTN +P +G
Sbjct: 225 -------------------PAKKAVLGFPYYGYAWRLTNANSHSYYAPTTGAA------- 258
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEML-RNGA 484
+ G + Y ++ + + NGA
Sbjct: 259 ---------------------------------------ISPDGSIGYGQIRKFIVDNGA 279
Query: 485 GYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGG 544
V++ + Y G W+G+DD +SI K+ + K G G W V DD +G
Sbjct: 280 TTVYNSTVVGDYCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAA 339
Query: 545 DVKYPLIGAMREELNGI 561
+ A + +
Sbjct: 340 SQAWDATTATTRTIQKV 356
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 299 bits (768), Expect = 2e-94
Identities = 98/588 (16%), Positives = 166/588 (28%), Gaps = 212/588 (36%)
Query: 30 VVCYYTNWSQY-RTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETK---DGK 85
V Y+ W Y R K THI ++FG + L+ F +N +G
Sbjct: 11 NVGYFAQWGVYGRAFQAKQLDVSGTAKNLTHINYSFGNINNQTLTCFMANKAQGTGPNGS 70
Query: 86 V-------------------------------GLYERIEQLKKANPKLKTLLAIGGWSFG 114
G + +++QLK NPKLK ++++GGW+
Sbjct: 71 DGAGDAWADFGMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWT-W 129
Query: 115 TQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAF 174
++ F + + + + R+
Sbjct: 130 SKNFSKAAAT-------------------------------------------EASRQKL 146
Query: 175 EAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWE---SQVG 231
L + N +G A AG D I++ D WE + G
Sbjct: 147 ---VSSCID--LYIKG----NLPNFEGRGGAGAAAGIFDGIDI---D----WEWPGTNSG 190
Query: 232 HNAPLRSPSSDSE------WQLREAFEAEAQEVKKPRLLLTAAVPVGPDNI-KGGYDVPA 284
+D + R+ +A + +L+A +P P +I GG+D PA
Sbjct: 191 LAGNGVDTVNDRANFKALLAEFRKQLDAYGST-NNKKYVLSAFLPANPADIDAGGWDDPA 249
Query: 285 VAGYLDFINLMAYDFHGKWESQV-GHNAPLRSPSSDSEW-RKQLSVENAANMWVRLGAPK 342
LDF ++ YD HG W + GH A L +D K+ S + A ++ G
Sbjct: 250 NFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKKFSADKAVKKYLAAGI-- 307
Query: 343 EQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTL 402
++L +G+ YGR +T
Sbjct: 308 ------------------------------------------DPKQLGLGLAAYGRGWTG 325
Query: 403 TNPAVFKVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPG 462
PA+
Sbjct: 326 AKNV-------------------------------------------SPWGPATD---GA 339
Query: 463 KYTAEAGFMSYYEVCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDN 522
T E Y ++ +D + G QW +D+ + + K +++
Sbjct: 340 PGTYETANEDYDKLK----TLGTDHYDAATGSAWRYDGTQWWSYDNIATTKQKTDYIVSK 395
Query: 523 GYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREELNGIPRANNAKDV 570
G GG M W + D L+GAM ++ +
Sbjct: 396 GLGGGMWWELSGDRN----------GELVGAMSDKFRAAAPGPVTEAA 433
Score = 32.1 bits (73), Expect = 0.72
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 726 DSKYKVVCYYTNWS 739
+ Y+ V Y+ W
Sbjct: 6 VNGYRNVGYFAQWG 19
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 297 bits (762), Expect = 8e-93
Identities = 76/395 (19%), Positives = 124/395 (31%), Gaps = 100/395 (25%)
Query: 30 VVCYY-------TNWSQYRTKIGKFQPEDIEP---DLCTHIIFAFGWLKKGKLSSFESND 79
V+ YY N+++ T + F +I P THI F+F + ++ +
Sbjct: 7 VIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAW--DP 64
Query: 80 ETKDGKV-GLYERIEQLKKANPKLKTLLAIGGWSFGTQ------KFKEMSKSRYSRQTFI 132
T D K + R+ LK NP L+ + +IGGW + + K+ SR F
Sbjct: 65 ATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFA 124
Query: 133 YSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRL--LLTA 190
S V ++ FDG++IDWEYP + ++ L+E+R + + L LT
Sbjct: 125 QSCVRIMKDYGFDGVNIDWEYP-QAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTI 183
Query: 191 AVPVGPDNIKGGY-DVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLRE 249
A G + Y + + LD+INLM YD G WE H A L ++ +
Sbjct: 184 AGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNAL 243
Query: 250 AFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGH 309
++ + + D AV +
Sbjct: 244 REANLGWSWEELTRAFPSPFSLTVDA--------AVQQH--------------------- 274
Query: 310 NAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQA---------SFTLVDPTKFDIGAP 360
+ G P + +F V +
Sbjct: 275 -------------------------LMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSS 309
Query: 361 ASGGG--------------EPGKYTAEAGFMSYYE 381
S G E + SY +
Sbjct: 310 HSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQ 344
Score = 263 bits (673), Expect = 7e-80
Identities = 73/369 (19%), Positives = 118/369 (31%), Gaps = 66/369 (17%)
Query: 247 LREAFEAEAQEVKKPRL--LLTAAVPVGPDNIKGGY-DVPAVAGYLDFINLMAYDFHGKW 303
+R + + L LT A G + Y + + LD+INLM YD G W
Sbjct: 161 IRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPW 220
Query: 304 ESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASG 363
E H A L ++ + L N W L
Sbjct: 221 EKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAF--------------------- 259
Query: 364 GGEPGKYTAEAGFMSYYEKY-LPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGE 422
P T +A + +P K+++G+P YGR F + S S G+
Sbjct: 260 -PSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDP- 317
Query: 423 YTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRN 482
+ G E + SY ++ +ML+
Sbjct: 318 --------------------------YPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQG 351
Query: 483 GAGY--VWDDEMKVPYLVHGD--QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFT 538
GY +W+D+ K PYL H +V +DD +S +YK ++K GG M W + D+
Sbjct: 352 NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRN 411
Query: 539 GTVCGGDVKYPLIGAMREELNGIPRANNAKDVDWAKVAGNVEVETVTKPAPIKIDVSELL 598
G L+ A+ N ++ D+ V +
Sbjct: 412 GD---------LLAALDRYFNAADYDDSQLDMGTGLRYTGVGPGNLPIMTAPAYVPGTTY 462
Query: 599 SKKKTTTIQ 607
++ + Q
Sbjct: 463 AQGALVSYQ 471
Score = 28.7 bits (64), Expect = 8.1
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 727 SKYKVVCYYTNWS 739
++ V+ YY +
Sbjct: 3 TRKAVIGYYFIPT 15
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 293 bits (753), Expect = 3e-92
Identities = 79/229 (34%), Positives = 115/229 (50%), Gaps = 20/229 (8%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG--------------WLKKGKLSSF 75
V Y+ NW+ Y P+D+ + TH+++AF W K
Sbjct: 45 SVVYFVNWAIYG---RNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPG 101
Query: 76 ESNDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSA 135
+S +T + G +++ LKK N LK LL+IGGW++ + F + + R+ F +A
Sbjct: 102 DSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTY-SPNFAPAASTDAGRKNFAKTA 160
Query: 136 VPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEA-EAQEVKKPRLLLTAAVPV 194
V L+ FDGLDIDWEYP ++VLLLKE+R A ++ A LLT A P
Sbjct: 161 VKLLQDLGFDGLDIDWEYPENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPA 220
Query: 195 GPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDS 243
GPD IK + + LDF NLMAYD+ G + S GH A + + +S+
Sbjct: 221 GPDKIK-VLHLKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSNP 268
Score = 242 bits (620), Expect = 8e-73
Identities = 64/319 (20%), Positives = 99/319 (31%), Gaps = 108/319 (33%)
Query: 247 LREAFEA-EAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+R A ++ A LLT A P GPD IK + + LDF NLMAYD+ G + S
Sbjct: 195 VRTALDSYSAANAGGQHFLLTVASPAGPDKIKV-LHLKDMDQQLDFWNLMAYDYAGSFSS 253
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
GH A + + +S+ + + A +++ G
Sbjct: 254 LSGHQANVYNDTSNP-LSTPFNTQTALDLYRAGGV------------------------- 287
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
P K+++GMP YGR+F T+
Sbjct: 288 -------------------PANKIVLGMPLYGRSFANTD--------------------- 307
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
G P +G G+ + E G Y + + GA
Sbjct: 308 ------------------------GPGKPYNG---VGQGSWENGVWDYKALPQ---AGAT 337
Query: 486 YVWDDEMKVPYLVHGD--QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCG 543
++ Y + +D+ + K ++K G GGAM W D
Sbjct: 338 EHVLPDIMASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSDKTG----- 392
Query: 544 GDVKYPLIGAMREELNGIP 562
LI + L G
Sbjct: 393 ---SDSLITTVVNALGGTG 408
Score = 33.5 bits (77), Expect = 0.23
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 709 SLVVVGSSKSSVKANKDDSKYKVVCYYTNWS 739
+++ + S+ + S Y+ V Y+ NW+
Sbjct: 23 AVMWNRDTSSTDLEARASSGYRSVVYFVNWA 53
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 291 bits (747), Expect = 6e-92
Identities = 78/230 (33%), Positives = 116/230 (50%), Gaps = 19/230 (8%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFG-------------WLKKGKLSSFE 76
V Y+ NW+ Y P+D++ D THI++AF W K +
Sbjct: 5 SVVYFVNWAIYG---RGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGD 61
Query: 77 SNDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAV 136
DE + G +++ LKK N LKTLL+IGGW++ + FK + + R+ F +++
Sbjct: 62 KWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTY-SPNFKTPASTEEGRKKFADTSL 120
Query: 137 PFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEA-EAQEVKKPRLLLTAAVPVG 195
++ FDG+DIDW+YP ++VLLLK REA +A A+ + LLT A P G
Sbjct: 121 KLMKDLGFDGIDIDWQYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAG 180
Query: 196 PDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEW 245
P N + + YLDF NLMAYDF G W+ GH + + ++ E
Sbjct: 181 PQNYN-KLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPES 229
Score = 243 bits (623), Expect = 1e-73
Identities = 66/320 (20%), Positives = 101/320 (31%), Gaps = 108/320 (33%)
Query: 247 LREAFEA-EAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
REA +A A+ + LLT A P GP N + + YLDF NLMAYDF G W+
Sbjct: 154 CREALDAYSAKHPNGKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDK 212
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
GH + + ++ E S + A +++ G
Sbjct: 213 VSGHMSNVFPSTTKPESTP-FSSDKAVKDYIKAGV------------------------- 246
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
P K+++GMP YGR F T+
Sbjct: 247 -------------------PANKIVLGMPLYGRAFASTDG-------------------- 267
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
IG +G G + E G Y ++ + GA
Sbjct: 268 -------------------------IGTSFNG---VGGGSWENGVWDYKDMPQ---QGAQ 296
Query: 486 YVWDDEMKVPYLVHGDQ--WVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCG 543
+++ Y ++ + +D K K ++ NG GG M W D
Sbjct: 297 VTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSDKTGN---- 352
Query: 544 GDVKYPLIGAMREELNGIPR 563
L+G + L G +
Sbjct: 353 ----ESLVGTVVNGLGGTGK 368
Score = 31.1 bits (71), Expect = 1.5
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 729 YKVVCYYTNWS 739
++ V Y+ NW+
Sbjct: 3 FRSVVYFVNWA 13
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB:
3alg_A*
Length = 353
Score = 289 bits (743), Expect = 9e-92
Identities = 70/208 (33%), Positives = 98/208 (47%), Gaps = 10/208 (4%)
Query: 39 QYRTKIGKFQPEDIEPDLCTHIIFAFGWLKK--GKLSSFESNDETKDGKVGLYERIEQLK 96
Y K +I+ L TH+ AF L +L N + + ++
Sbjct: 7 GYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQD------SFRQFTSTVQ 60
Query: 97 KANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAG 156
+ NP +KT L+I G + + M++ SR++FI S++ RQ F GLD+DWEYP
Sbjct: 61 RKNPSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLS 120
Query: 157 TDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFIN 216
D N LL E R A EA+ + LLLTAAV P Y V ++A LD+IN
Sbjct: 121 AADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWIN 180
Query: 217 LMAYDFHGKWESQ--VGHNAPLRSPSSD 242
LMAYDF+G S +A L P +
Sbjct: 181 LMAYDFYGPNWSPSQTNSHAQLFDPVNH 208
Score = 266 bits (682), Expect = 7e-83
Identities = 70/315 (22%), Positives = 110/315 (34%), Gaps = 99/315 (31%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
R A EA+ + LLLTAAV P Y V ++A LD+INLMAYDF+G S
Sbjct: 134 WRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMAYDFYGPNWSP 193
Query: 307 --VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGG 364
+A L P + +S + N W++ G
Sbjct: 194 SQTNSHAQLFDPVNH------VSGSDGINAWIQAGV------------------------ 223
Query: 365 GEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYT 424
P +KL++G+P Y
Sbjct: 224 --------------------PTKKLVLGIPFY---------------------------- 235
Query: 425 ISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEML-RNG 483
G ++ LV+ + APA+G G + G M+Y + + + +
Sbjct: 236 -------------GYAWRLVNANIHGLRAPAAGKSNVGAV--DDGSMTYNRIRDYIVESR 280
Query: 484 AGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCG 543
A V++ + Y G W+ +DD +++R K+N++K G G W V D G
Sbjct: 281 ATTVYNATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLS-- 338
Query: 544 GDVKYPLIGAMREEL 558
G +E+
Sbjct: 339 -RTASQTWGVSFQEM 352
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 286 bits (735), Expect = 6e-90
Identities = 75/232 (32%), Positives = 113/232 (48%), Gaps = 21/232 (9%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKG--------------KLSSF 75
Y+TNW Y FQP D++ H++++F L+ S
Sbjct: 23 NAVYFTNWGIYG---RNFQPADLQASKILHVLYSFMNLRVDGTVYSGDTYADLEKHYSDD 79
Query: 76 ESNDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSA 135
ND + G +++ +LKKAN LK +L+IGGW++ T F + + +R TF +A
Sbjct: 80 SWNDIGTNAY-GCVKQLYKLKKANRSLKIMLSIGGWTWST-NFPAAASTEATRATFAKTA 137
Query: 136 VPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEA-EAQEVKKPRLLLTAAVPV 194
V F++ FDG+D+DWEYPA D N VLLL+ +R+ ++ A L+ A P
Sbjct: 138 VEFMKDWGFDGIDVDWEYPASETDANNMVLLLQRVRQELDSYSATYANGYHFQLSIAAPA 197
Query: 195 GPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQ 246
GP + + + LD INLMAYD+ G W+S GH L +S+
Sbjct: 198 GPSHYN-VLKLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNPSST 248
Score = 240 bits (614), Expect = 2e-72
Identities = 60/323 (18%), Positives = 93/323 (28%), Gaps = 108/323 (33%)
Query: 247 LREAFEA-EAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+R+ ++ A L+ A P GP + + + LD INLMAYD+ G W+S
Sbjct: 172 VRQELDSYSATYANGYHFQLSIAAPAGPSHYNV-LKLAQLGSVLDNINLMAYDYAGSWDS 230
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
GH L +S+ S + A + ++ G
Sbjct: 231 VSGHQTNLYPSTSNPSSTP-FSTKAAVDAYIAAGV------------------------- 264
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
P K+I+GMP YGR F T+
Sbjct: 265 -------------------PASKIILGMPIYGRAFVGTD--------------------- 284
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAG 485
P G+ + E+G Y + + GA
Sbjct: 285 ---------------------------GPGKPYSTIGEGSWESGIWDYKVLP---KAGAT 314
Query: 486 YVWDDEMKVPYLVHGD--QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCG 543
+ D Y + +D +R K+++ K G GG+M W D
Sbjct: 315 VITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASADKTGS---- 370
Query: 544 GDVKYPLIGAMREELNGIPRANN 566
LIG + N
Sbjct: 371 ----DSLIGTALSSMGSHDSTQN 389
Score = 31.1 bits (71), Expect = 1.3
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 715 SSKSSVKANKDDSKYKVVCYYTNWS 739
+S + + Y+TNW
Sbjct: 7 EDLASTDLSTRATGSINAVYFTNWG 31
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 285 bits (732), Expect = 2e-89
Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 32/244 (13%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKV--- 86
V Y+ G + ++ TH+ ++FG + + + +
Sbjct: 28 SVGYFNGGGDVTAGPG-GDIDKLDVRQITHLNYSFGLIYNDEKDETNAALKDPAHLHEIW 86
Query: 87 ------GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLR 140
+++ L+K NP LK LL++GGW G + F + + SR FI SA ++
Sbjct: 87 LSPKVQADLQKLPALRKQNPDLKVLLSVGGW--GARGFSGAAATAESRAVFIRSAQKIIQ 144
Query: 141 QRNFDGLDIDWEYPAGTD---------DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAA 191
Q DG+D+DWE+P D+ N+ LLK LREA + L+T A
Sbjct: 145 QYGLDGIDLDWEFPVNGAWGLVASQPADRDNFTALLKSLREAV--------GEQKLVTIA 196
Query: 192 VPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAF 251
V ++ K DV AVA L++INLM YD + N+ L S + +
Sbjct: 197 VGANAESPKSWVDVKAVAPVLNYINLMTYDMAYGTQ---YFNSNLYDSSHWPTVAAADKY 253
Query: 252 EAEA 255
A+
Sbjct: 254 SADF 257
Score = 242 bits (619), Expect = 6e-73
Identities = 61/332 (18%), Positives = 96/332 (28%), Gaps = 114/332 (34%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
LREA + L+T AV ++ K DV AVA L++INLM YD +
Sbjct: 183 LREAV--------GEQKLVTIAVGANAESPKSWVDVKAVAPVLNYINLMTYDMAYGTQ-- 232
Query: 307 VGHNAPLRSPSSDSEW--RKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGG 364
N+ L S + S + N ++ G
Sbjct: 233 -YFNSNLYDSSHWPTVAAADKYSADFVVNNYLAAGLKPS--------------------- 270
Query: 365 GEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYT 424
++ +G+ YGR
Sbjct: 271 -----------------------QMNLGIGFYGRVPKRAVE------------------- 288
Query: 425 ISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASG------GGEPGKYTAEAGFMSYYEVCE 478
G +T D + P G G ++ ++ Y ++
Sbjct: 289 ------------PGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTYVKYNDIVG 336
Query: 479 MLRN----GAGYVWDDEMKVPYLVHGDQ------WVGFDDEKSIRYKMNWLKDNGYGGAM 528
L N WDDE KVP+L + +++ +S+ K +++K G GAM
Sbjct: 337 KLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFALSYENPRSVAIKADYIKAKGLAGAM 396
Query: 529 VWTVDMDDFTGTVCGGDVKYPLIGAMREELNG 560
W DD L + E L
Sbjct: 397 FWEYGADDQNQ----------LARQLAESLGI 418
Score = 34.7 bits (80), Expect = 0.11
Identities = 3/32 (9%), Positives = 8/32 (25%)
Query: 709 SLVVVGSSKSSVKANKDDSKYKVVCYYTNWSH 740
L ++ + + V Y+
Sbjct: 6 RLPLLAALPLLCASALSAQPLMSVGYFNGGGD 37
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 272 bits (697), Expect = 3e-84
Identities = 76/270 (28%), Positives = 123/270 (45%), Gaps = 55/270 (20%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETK------- 82
+V YY +W+ Y + DI+P THI +AF + +
Sbjct: 14 IVGYYPSWAAYG---RNYNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNPVTWTCQ 70
Query: 83 ----------DGKV-----------------------GLYERIEQLKKANPKLKTLLAIG 109
+G + G ++ +LK+ NP LKT++++G
Sbjct: 71 NEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNPNLKTIISVG 130
Query: 110 GWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGT---------DDK 160
GW++ + +F +++ + +R+ F SAV FLR+ NFDG+D+DWEYP +DK
Sbjct: 131 GWTW-SNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKRPEDK 189
Query: 161 KNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAY 220
+NY LLL ++RE +A K LLT A ++ +A +D+IN+M Y
Sbjct: 190 QNYTLLLSKIREKLDAAGAVDGKK-YLLTIASGASATYAAN-TELAKIAAIVDWINIMTY 247
Query: 221 DFHGKWESQVGHNAPLRSPSSDSEWQLREA 250
DF+G W+ HNAPL + S + +A
Sbjct: 248 DFNGAWQKISAHNAPLNYDPAASAAGVPDA 277
Score = 231 bits (591), Expect = 6e-69
Identities = 67/320 (20%), Positives = 103/320 (32%), Gaps = 107/320 (33%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
+RE +A K LLT A ++ +A +D+IN+M YDF+G W+
Sbjct: 199 IREKLDAAGAVDGKK-YLLTIASGASATYAAN-TELAKIAAIVDWINIMTYDFNGAWQKI 256
Query: 307 VGHNAPLRSPSSDSEW----RKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPAS 362
HNAPL + S +V A + G
Sbjct: 257 SAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGV---------------------- 294
Query: 363 GGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGE 422
P KL++G+P Y
Sbjct: 295 ----------------------PAAKLVLGVPFY-------------------------- 306
Query: 423 YTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEML-- 480
GR + +GG G T EAG +Y++
Sbjct: 307 ---------------GRGWDGCAQAGNGQYQTCTGGSSVG--TWEAGSFDFYDLEANYIN 349
Query: 481 RNGAGYVWDDEMKVPYLVHGD--QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFT 538
+NG W+D KVPYL + +++ +DD +S+ YK ++K G GGAM W + D
Sbjct: 350 KNGYTRYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGDRNK 409
Query: 539 GTVCGGDVKYPLIGAMREEL 558
L ++ +L
Sbjct: 410 T----------LQNKLKADL 419
Score = 32.8 bits (75), Expect = 0.44
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 726 DSKYKVVCYYTNWS 739
YK+V YY +W+
Sbjct: 9 ADSYKIVGYYPSWA 22
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 262 bits (672), Expect = 7e-79
Identities = 51/228 (22%), Positives = 87/228 (38%), Gaps = 21/228 (9%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGL 88
+ GK P D + + I F + G + + ++ K GL
Sbjct: 169 RLGVATDPDDAIANHKGKTIPVDPDGAVLASINCGFTKWEAGDANERYNQEKAK----GL 224
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRN-FDGL 147
L +A+ +L+ L+IGGWS F E++K R F+ F ++ F L
Sbjct: 225 LGGFRLLHEADKELEFSLSIGGWSMS-GLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHL 283
Query: 148 DIDWEYPAGTD--------DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNI 199
DIDWEYP D N+ +L++++ +A + ++ A P I
Sbjct: 284 DIDWEYPGSIGAGNPNSPDDGANFAILIQQITDAKISN-------LKGISIASSADPAKI 336
Query: 200 KGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQL 247
+ + INLM YDF + ++ H+ + SD +
Sbjct: 337 DAANIPALMDAGVTGINLMTYDFFTLGDGKLSHHTNIYRDPSDVYSKY 384
Score = 219 bits (558), Expect = 1e-62
Identities = 50/326 (15%), Positives = 90/326 (27%), Gaps = 102/326 (31%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
+ +A + ++ A P I + + INLM YDF + +
Sbjct: 314 ITDAKISN-------LKGISIASSADPAKIDAANIPALMDAGVTGINLMTYDFFTLGDGK 366
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
+ H+ + SD + S+++A + +
Sbjct: 367 LSHHTNIYRDPSDVY--SKYSIDDAVTHLID------------------EKKVDP----- 401
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTIS 426
+ + IG Y R S S G YT
Sbjct: 402 --------------------KAIFIGYAGYTRNAKNATIT----TSIPSEEALKGTYT-- 435
Query: 427 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYE-VCEML----- 480
G + E + + + +C +
Sbjct: 436 -----------------------------DANQTLGSF--EYSVLEWTDIICHYMDFEKG 464
Query: 481 --RNGAGYVWDDEMKVPYLVH--GDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
RNG V D K YL ++ D +S+R K ++KD G GG +W+ D D+
Sbjct: 465 EGRNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 524
Query: 537 FTGTVCGGDVKYPLIGAMREELNGIP 562
T L ++ ++ +
Sbjct: 525 GILT---NAAHEGLKRRIKNKVIDMT 547
Score = 35.7 bits (82), Expect = 0.053
Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 692 SSKSSVKANKDDPK---YKVSLVVVGSSKSSVKANKDDSKYKVVCYYTNWS 739
+++ + + +P K++ +K+ +DD + V+CY+T+WS
Sbjct: 60 AAEETYQELNYEPSISADKLTWTPTRLAKTVFNTYEDDDDFNVLCYFTDWS 110
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 256 bits (656), Expect = 6e-77
Identities = 68/266 (25%), Positives = 106/266 (39%), Gaps = 55/266 (20%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKL----------------- 72
V Y+ W Y F + I TH+++ F + G
Sbjct: 137 VGSYFVEWGVYG---RNFTVDKIPAQNLTHLLYGFIPICGGNGINDSLKEIEGSFQALQR 193
Query: 73 --------------------SSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWS 112
+ + D G + ++ LK+A+P LK L +IGGW+
Sbjct: 194 SCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWT 253
Query: 113 FGTQKFKEMSKSRYSRQTFIYSAVPFLRQ-RNFDGLDIDWEYPAG---------TDDKKN 162
F M + R F+ S FL+ + FDG+DIDWE+P G D +
Sbjct: 254 LSDP-FFFMG-DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGET 311
Query: 163 YVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDF 222
YVLL+KELR + + E + + LT+A+ G D I +D I LM+YDF
Sbjct: 312 YVLLMKELRAMLDQLSVETGR-KYELTSAISAGKDKIDK-VAYNVAQNSMDHIFLMSYDF 369
Query: 223 HGKWESQV-GHNAPLRSPSSDSEWQL 247
+G ++ + GH L +P+ +
Sbjct: 370 YGAFDLKNLGHQTALNAPAWKPDTAY 395
Score = 224 bits (573), Expect = 5e-65
Identities = 55/320 (17%), Positives = 95/320 (29%), Gaps = 105/320 (32%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
LR + + E + + LT+A+ G D I +D I LM+YDF+G ++ +
Sbjct: 319 LRAMLDQLSVETGR-KYELTSAISAGKDKIDK-VAYNVAQNSMDHIFLMSYDFYGAFDLK 376
Query: 307 V-GHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
GH L +P+ + + N N + G
Sbjct: 377 NLGHQTALNAPAWKPDT--AYTTVNGVNALLAQGV------------------------- 409
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTI 425
K+++G YGR +T N + + G
Sbjct: 410 -------------------KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG------- 443
Query: 426 SKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEML-RNGA 484
P K T E G + Y ++
Sbjct: 444 -----------------------------------PVKGTWENGIVDYRQIAGQFMSGEW 468
Query: 485 GYVWDDEMKVPYLVHGD--QWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVC 542
Y +D + PY+ + FDD +S++ K ++ D GG W +D D+
Sbjct: 469 QYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNG----- 523
Query: 543 GGDVKYPLIGAMREELNGIP 562
++ +M L
Sbjct: 524 ------DILNSMNASLGNSA 537
Score = 36.7 bits (85), Expect = 0.027
Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 18/110 (16%)
Query: 637 SGDQDVSASINRFKLKNRTAASSANSAVI-----AAGSSKSSVKASKDD--PKYKVSLLV 689
+GD +A + + + S+ +S G + V D + +V
Sbjct: 47 NGDTGTTAKVLLNGKEAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIV 106
Query: 690 VRSSKSSVKANKDDPKYKVSLVVVGSSKSSVKANKDDSKYKVVCYYTNWS 739
V + S A +P K K +S V Y+ W
Sbjct: 107 VADTDGSHLAPLKEP-----------LLEKNKPYKQNSGKVVGSYFVEWG 145
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 252 bits (645), Expect = 6e-75
Identities = 72/286 (25%), Positives = 108/286 (37%), Gaps = 54/286 (18%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDET-------- 81
+ Y+ W Y + +++ D THI++ F + S +
Sbjct: 140 MGTYFVEWGIYG---RDYTVDNMPVDNLTHILYGFIPICGPNESVKSVGGNSFNALQTAC 196
Query: 82 ---KDGKV-------------------------GLYERIEQLKKANPKLKTLLAIGGWSF 113
D +V G Y + LK+ NP LK + +IGGW+
Sbjct: 197 RGVNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAMLMALKQRNPDLKIIPSIGGWTL 256
Query: 114 GTQKFKEMSKSRYSRQTFIYSAVPFLRQRNF-DGLDIDWEYPAG----------TDDKKN 162
F + + +R TF+ S FL+ F DG+DIDWE+P G +D
Sbjct: 257 SD-PFYDFV-DKKNRDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADKGDPVNDGPA 314
Query: 163 YVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDF 222
Y+ L++ELR + E + LT+A+ VG D I+ D Y+D+I M YDF
Sbjct: 315 YIALMRELRVMLDELEAETGR-TYELTSAIGVGYDKIED-VDYADAVQYMDYIFAMTYDF 372
Query: 223 HGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRLLLTAA 268
+G W + GH L S Q E E K
Sbjct: 373 YGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADN 418
Score = 221 bits (564), Expect = 2e-63
Identities = 70/353 (19%), Positives = 110/353 (31%), Gaps = 95/353 (26%)
Query: 226 WE--SQVGHNAPLRSPSSDSEW------QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIK 277
WE G A P +D +LR + E + LT+A+ VG D I+
Sbjct: 293 WEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGR-TYELTSAIGVGYDKIE 351
Query: 278 GGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVR 337
D Y+D+I M YDF+G W + GH L S
Sbjct: 352 D-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRP---------------- 394
Query: 338 LGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYG 397
+ YTA+ G + +P KL++G YG
Sbjct: 395 -------------GQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYG 441
Query: 398 RTFTLTNP-AVFKVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPAS 456
R + P + N P +G
Sbjct: 442 RGWEGVTPDTLTDPNDPMTGTA-----------------------------------TGK 466
Query: 457 GGGEPGKYTAEAGFMSYYEVCEML-------RNGAGYVWDDEMKVPYLVHGD--QWVGFD 507
G + E G + Y + + NG Y +D + + P++ + + + FD
Sbjct: 467 LKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFD 526
Query: 508 DEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREELNG 560
D +S+ K N+ K G G W +D D+ ++ AM E + G
Sbjct: 527 DHRSVLAKGNYAKSLGLAGLFSWEIDADNGD-----------ILNAMHEGMAG 568
Score = 34.1 bits (78), Expect = 0.16
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 14/117 (11%)
Query: 628 SIKSKPSEDSGDQDVSASINRFKLKNRTAASSANSAVI-----AAGSSKSSVKASKDDPK 682
IK K ++ SG + ++ +K T A + + G + ++A
Sbjct: 41 KIKVKFNQWSGTSGDTYNVYFDGVKVATGAITGSQTTASFEYGQGGLYQMEIEACDATGC 100
Query: 683 YKVSLLVVRSSKSSVKANKDDPKYKVSLVVVGSSKSSVKANKDDSKYKVVCYYTNWS 739
S + V+ D + + + K+ D + Y+ W
Sbjct: 101 ---------SKSAPVEITIADTDGSHLKPLTMNVDPNNKSYNTDPSIVMGTYFVEWG 148
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 239 bits (612), Expect = 4e-73
Identities = 50/221 (22%), Positives = 82/221 (37%), Gaps = 36/221 (16%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKV--- 86
V+ Y + IE THI +F +K DG +
Sbjct: 6 VIGYLALDDWEF----ESLFPTIEWKYLTHINASFARVKA-------------DGTLNIN 48
Query: 87 GLYERIEQL--KKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNF 144
+ +RIE + +K L+++ S G +F +R+ I + F ++
Sbjct: 49 PVRKRIESVRETAHKHNVKILISLAKNSPG--EFTTAINDPKARKELIQQIIAFTKEYKL 106
Query: 145 DGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYD 204
DG DID+E + KN+ LL R + A+ + +L+T AV N ++
Sbjct: 107 DGFDIDYEEYD--NWDKNFPSLLVFARGLYLAK-----EKNMLMTCAVNSRWLNYGTEWE 159
Query: 205 VPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEW 245
Y D+INLM+YD + V H + W
Sbjct: 160 -----QYFDYINLMSYDRGAFTDKPVQHASYDDFVKDLKYW 195
Score = 165 bits (419), Expect = 7e-46
Identities = 43/320 (13%), Positives = 79/320 (24%), Gaps = 139/320 (43%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
R + A+ + +L+T AV N ++ Y D+INLM+YD +
Sbjct: 130 ARGLYLAK-----EKNMLMTCAVNSRWLNYGTEWE-----QYFDYINLMSYDRGAFTDKP 179
Query: 307 VGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGE 366
V H + W + A
Sbjct: 180 VQHASYDDFVKDLKYW------------NEQCRAS------------------------- 202
Query: 367 PGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEYTIS 426
K K++ G+P YG ++ +
Sbjct: 203 -------------------KSKIVGGLPFYGYSWEESLQ--------------------- 222
Query: 427 KEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGY 486
G + + Y + + L N A
Sbjct: 223 ------------------------------GAVDDVRGI------RYSGILKHLGNEA-A 245
Query: 487 VWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDV 546
D+ ++ +I K ++K+N Y G M+W + D +
Sbjct: 246 DKDN----------IGKTYYNGRPTIANKCKFIKENDYAGVMIWQLFQDAH-----NDNY 290
Query: 547 KYPLIGAMREELNGIPRANN 566
LI + E+ ++
Sbjct: 291 DLKLINVVGREMMEEGHHHH 310
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 218 bits (557), Expect = 8e-66
Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 21/221 (9%)
Query: 34 YTNWSQYRTKIG-KFQPEDIEPDLCT-HIIFAFGWLKKGKLSSFESN---DETKDGKVGL 88
+ + Y G KF I P + + +F +N + D +
Sbjct: 3 FVEYIGYPLFSGVKFSDVPINPHITKFQFVLSFAVDYTASSPHTSTNGKFNVFWDSSILG 62
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKF-KEMSKSRYSRQTFIYSAVPFLRQRNFDGL 147
++I +K ++P ++ +++GG S G+ + + + S +++ N DG+
Sbjct: 63 PDQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDGI 122
Query: 148 DIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPA 207
DID+E+ DK + + L KK ++ A++ P Y +
Sbjct: 123 DIDYEHF-QNTDKNTFAECIGRLITTL-------KKNGVISFASISPFPSVD--EYYLAL 172
Query: 208 VAGYLDFINLMAYDFHG-----KWESQVGHNAPLRSPSSDS 243
Y + IN + Y F + +G+ S
Sbjct: 173 FNEYKNAINHINYQFKAYDSSTSVDKFLGYYNNAASKYKGG 213
Score = 85.2 bits (211), Expect = 2e-18
Identities = 19/185 (10%), Positives = 37/185 (20%), Gaps = 63/185 (34%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWES 305
+L KK ++ A++ P Y + Y + IN + Y F S
Sbjct: 143 RLITTL-------KKNGVISFASISPFPSVD--EYYLALFNEYKNAINHINYQFKAYDSS 193
Query: 306 QVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGG 365
++ S++ + G
Sbjct: 194 TSVDKFLGYYNNAASKY-----KGGNVLISFSTGP------------------------- 223
Query: 366 EPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPA----VFKVNSPAS-GGGKA 420
L + + +L N + + S
Sbjct: 224 -------------------HPGGLPVDKGFFDAATSLKNKGKLHGIAVWTADTSKSSDFR 264
Query: 421 GEYTI 425
E
Sbjct: 265 YEEEA 269
Score = 45.2 bits (107), Expect = 4e-05
Identities = 8/62 (12%), Positives = 14/62 (22%), Gaps = 13/62 (20%)
Query: 425 ISKEKLMIGMPTYGRSFTLVDPTK----FDIGAPASGGGEPGKYTAEAGFMSYYEVCEML 480
L + + + +L + K A S F E L
Sbjct: 223 PHPGGLPVDKGFFDAATSLKNKGKLHGIAVWTADTSKSS---------DFRYEEEAQAFL 273
Query: 481 RN 482
+
Sbjct: 274 VS 275
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 201 bits (513), Expect = 7e-59
Identities = 40/215 (18%), Positives = 80/215 (37%), Gaps = 32/215 (14%)
Query: 36 NWSQYRTKIGKF-----------QPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDG 84
+ S Y F D P + IF + G +++ ++ +
Sbjct: 2 SLSNYIAGTLSFYVLRNPDLDRELINDYAPYSSSISIFEYHIAPNGDIANQLNDAAAIE- 60
Query: 85 KVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNF 144
++ L T+ + F T+ ++ + +R + + + R +
Sbjct: 61 --------TTWQRRVTPLATITNLTSGGFSTEIVHQVLNNPTARTNLVNNIYDLVSTRGY 112
Query: 145 DGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPD---NIKG 201
G+ ID+E D+ + L++LR+ +A +LT AVP
Sbjct: 113 GGVTIDFEQV-SAADRDLFTGFLRQLRDRLQAG-------GYVLTIAVPAKTSDNIPWLR 164
Query: 202 GYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPL 236
GYD + ++++ +MAYD+H S+ G AP+
Sbjct: 165 GYDYGGIGAVVNYMFIMAYDWHHAG-SEPGPVAPI 198
Score = 154 bits (392), Expect = 4e-42
Identities = 43/299 (14%), Positives = 78/299 (26%), Gaps = 130/299 (43%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPD---NIKGGYDVPAVAGYLDFINLMAYDFHGKW 303
LR+ +A +LT AVP GYD + ++++ +MAYD+H
Sbjct: 137 LRDRLQAG-------GYVLTIAVPAKTSDNIPWLRGYDYGGIGAVVNYMFIMAYDWHHAG 189
Query: 304 ESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASG 363
S+ G AP+ + + P+
Sbjct: 190 -SEPGPVAPI------------TEIRRTIEFTIA--------------------QVPS-- 214
Query: 364 GGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGKAGEY 423
K+IIG+P YG + + P G A
Sbjct: 215 -----------------------RKIIIGVPLYGYDWII----------PYQPGTVAS-- 239
Query: 424 TISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNG 483
+ + +R
Sbjct: 240 ---------------------------------------------AISNQNAIERAMRYQ 254
Query: 484 AGYVWDDEMKVPYLVHGDQ-----WVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDF 537
A + E + P+ + DQ V F+ +S+ KM +++ W + + +
Sbjct: 255 APIQYSAEYQSPFFRYSDQQGRTHEVWFEGVRSMSRKMQIVREYRLQAIGAWQLTLAEG 313
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase
(glucosidase); 1.90A {Streptomyces plicatus} SCOP:
c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A
1c93_A
Length = 271
Score = 167 bits (425), Expect = 3e-47
Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 23/222 (10%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLY 89
V Y + +GK+ D + + + + ++ + L
Sbjct: 11 SVAYVEVNNNSMLNVGKYTLADGGGNAFDVAVIFAANINYDTGTKTAYLHFNENVQRVLD 70
Query: 90 ERIEQLKKA-NPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
+ Q++ +K LL++ G G F S+ + F + + DG+D
Sbjct: 71 NAVTQIRPLQQQGIKVLLSVLGNHQGAG-FANFP-SQQAASAFAKQLSDAVAKYGLDGVD 128
Query: 149 IDWEYPAGTD------DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGG 202
D EY + + ++V L+ LR P +++ GP +
Sbjct: 129 FDDEYAEYGNNGTAQPNDSSFVHLVTALRANM---------PDKIISLYNI-GPAASRLS 178
Query: 203 YDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLR-SPSSDS 243
Y V+ D+ ++G W+ + SP++
Sbjct: 179 YGGVDVSDKFDY---AWNPYYGTWQVPGIALPKAQLSPAAVE 217
Score = 53.8 bits (129), Expect = 5e-08
Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 16/128 (12%)
Query: 247 LREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQ 306
LR P +++ GP + Y V+ D+ ++G W+
Sbjct: 156 LRANM---------PDKIISLYNI-GPAASRLSYGGVDVSDKFDY---AWNPYYGTWQVP 202
Query: 307 VGHNAPLR-SPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGG- 364
+ SP++ R S ++ L + + +
Sbjct: 203 GIALPKAQLSPAAVEIGRTSRSTVADLARRTVDEGYGVYLTYNLDGGDRTADVSAFTREL 262
Query: 365 -GEPGKYT 371
G T
Sbjct: 263 YGSEAVRT 270
Score = 29.2 bits (65), Expect = 4.9
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 511 SIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCG 543
++ D GYG + + +D D T V
Sbjct: 225 TVADLARRTVDEGYGVYLTYNLDGGDRTADVSA 257
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A
{Aspergillus fumigatus}
Length = 290
Score = 141 bits (357), Expect = 1e-37
Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 23/217 (10%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVG-L 88
V+CY+ R P THII A L + ++D L
Sbjct: 15 VICYHQTLCPNRGDYVSVLPLVKNNTGVTHIIIAAFHLNEDPGHITLNDDPPDHEMYNPL 74
Query: 89 YERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLD 148
+ + LK++ +K + +GG + G+ ++ + + + + + +R+ DGLD
Sbjct: 75 WAEVPVLKRSG--VKVMGMLGGAAQGS--YRCLDGDQEKFERYYQPLLAMVRRHQLDGLD 130
Query: 149 IDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVP----VGPDNIKGGY- 203
+D E + L+ L+ ++T A +G N+ G
Sbjct: 131 LDVEEEMSLP---GIIRLIDRLKLDL--------GDDFIITLAPVAAALLGIGNLSGFDY 179
Query: 204 --DVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRS 238
+ + N Y+ G E + A +
Sbjct: 180 RQLEQQRGSKISWYNAQFYNGWGLAEDPRMYAAIVAQ 216
Score = 31.1 bits (70), Expect = 1.1
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 15/77 (19%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVP----VGPDNIKGGY---DVPAVAGYLDFINLMAYD 298
+L+ ++T A +G N+ G + + N Y+
Sbjct: 148 RLKLDL--------GDDFIITLAPVAAALLGIGNLSGFDYRQLEQQRGSKISWYNAQFYN 199
Query: 299 FHGKWESQVGHNAPLRS 315
G E + A +
Sbjct: 200 GWGLAEDPRMYAAIVAQ 216
Score = 28.4 bits (63), Expect = 7.8
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 726 DSKYKVVCYYTNWSH 740
+V+CY+
Sbjct: 10 PEHRRVICYHQTLCP 24
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome,
secreted, hydrolase; 2.70A {Homo sapiens}
Length = 393
Score = 140 bits (353), Expect = 4e-36
Identities = 37/216 (17%), Positives = 74/216 (34%), Gaps = 28/216 (12%)
Query: 29 EVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKK--GKLSSFESNDETKDGKV 86
+V+ Y T W+ + + + T I + LK+ ++ + G
Sbjct: 80 DVLGYVTPWNSHG-----YDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQG-- 132
Query: 87 GLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDG 146
+ ++K L + + + F+ + S + + V + ++FDG
Sbjct: 133 ----WMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDG 188
Query: 147 LDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIK------ 200
++ + + + +L L EA + RLL +P
Sbjct: 189 FVVEVWNQLLSQKRVGLIHMLTHLAEAL-------HQARLLALLVIPPAITPGTDQLGMF 241
Query: 201 GGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPL 236
+ +A LD +LM YD+ + G NAPL
Sbjct: 242 THKEFEQLAPVLDGFSLMTYDYSTAHQP--GPNAPL 275
Score = 81.2 bits (200), Expect = 2e-16
Identities = 38/297 (12%), Positives = 68/297 (22%), Gaps = 127/297 (42%)
Query: 246 QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIK------GGYDVPAVAGYLDFINLMAYDF 299
L EA + RLL +P + +A LD +LM YD+
Sbjct: 211 HLAEAL-------HQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFSLMTYDY 263
Query: 300 HGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGA 359
+ G NAPL W V +
Sbjct: 264 STAHQP--GPNAPL-------SW-----VRACVQVLDPKSK------------------- 290
Query: 360 PASGGGEPGKYTAEAGFMSYYEKYLPKEKLIIGMPTYGRTFTLTNPAVFKVNSPASGGGK 419
+ K+++G+ YG + + ++ G
Sbjct: 291 -------------------------WRSKILLGLNFYGMDYATSK------DAREPVVGA 319
Query: 420 AGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEM 479
T+ + + +D A F Y
Sbjct: 320 RYIQTLKDHRPRM---------------VWD-------------SQASEHFFEY------ 345
Query: 480 LRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDD 536
G V + KS++ ++ ++ G G +W +
Sbjct: 346 --------KKSR-------SGRHVVFYPTLKSLQVRLELARELGVGV-SIWELGQGL 386
>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A
{Elizabethkingia meningoseptica} SCOP: c.1.8.5
Length = 289
Score = 132 bits (333), Expect = 1e-34
Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 25/231 (10%)
Query: 19 SIKSKPERLLEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESN 78
++ + +++ + F ++ L ++ + +
Sbjct: 1 AVTGTTKANIKLFSFTEVNDTNPLNNLNFTLKNSGKPLVDMVVLFSANINYDAANDKVFV 60
Query: 79 DETKDGKVGLYERIEQLKKA-NPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVP 137
+ + L R + LK + +K +L+I G + +S + + F
Sbjct: 61 SNNPNVQHLLTNRAKYLKPLQDKGIKVILSILGNHDRSG-IANLSTA--RAKAFAQELKN 117
Query: 138 FLRQRNFDGLDIDWEYPA---------GTDDKKNYVLLLKELREAFEAEAQEVKKPRLLL 188
N DG+ D EY A T L E ++A P L+
Sbjct: 118 TCDLYNLDGVFFDDEYSAYQTPPPSGFVTPSNNAAARLAYETKQAM---------PNKLV 168
Query: 189 TAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSP 239
T V + D Y+D+ +D+ G ++ + +S
Sbjct: 169 TVYVYSRTSSFPTAVDGVNAGSYVDY---AIHDYGGSYDLATNYPGLAKSG 216
Score = 51.2 bits (122), Expect = 5e-07
Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 15/123 (12%)
Query: 226 WESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKK--PRLLLTAAVPVGPDNIKGGYDVP 283
E P + S A A E K+ P L+T V + D
Sbjct: 131 DEYSAYQTPPPSGFVTPS----NNAAARLAYETKQAMPNKLVTVYVYSRTSSFPTAVDGV 186
Query: 284 AVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKE 343
Y+D+ +D+ G ++ + +S S S E + A +
Sbjct: 187 NAGSYVDY---AIHDYGGSYDLATNYPGLAKSGMVMS------SQEFNQGRYATAQALRN 237
Query: 344 QAS 346
+
Sbjct: 238 IVT 240
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A
{Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A*
3n18_A* 3n1a_A*
Length = 333
Score = 131 bits (330), Expect = 1e-33
Identities = 42/225 (18%), Positives = 70/225 (31%), Gaps = 39/225 (17%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDGKVGLY 89
+V Y W + G + +D+ P I +F G S+ E +
Sbjct: 9 LVGY---WHNFDNGTGIIKLKDVSPKW-DVINVSF-GETGGDRSTVEFSPVY-GTDADFK 62
Query: 90 ERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDI 149
I LK K +L+IGG + + ++ FI S + + FDG+DI
Sbjct: 63 SDISYLKSKG--KKVVLSIGGQNGVV-----LLPDNAAKDRFINSIQSLIDKYGFDGIDI 115
Query: 150 DWEYPAGTD---------DKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIK 200
D E + V L+ +R + P LL+ A P
Sbjct: 116 DLESGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHY-----GPDFLLSMA-PETAYVQG 169
Query: 201 GG-----------YDVPAVAGYLDFINLMAYDFHGKWESQVGHNA 234
G + V L +I++ Y+ +
Sbjct: 170 GYSAYGSIWGAYLPIIYGVKDKLTYIHVQHYNAGSGIGMDGNNYN 214
Score = 68.8 bits (168), Expect = 1e-12
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 29/133 (21%)
Query: 428 EKLMIGMPTYG---RSFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGA 484
+ L+ G P G F + + IG PA+ G++S E+ + L
Sbjct: 226 DMLLHGFPVGGNANNIFPALRSDQVMIGLPAAPAA-----APSGGYISPTEMKKAL---- 276
Query: 485 GYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGG 544
Y++ + V F + + + + + G M W+++ D
Sbjct: 277 ----------NYII---KGVPFGGKYKLSNQSGY---PAFRGLMSWSINWDAKNNFEFSN 320
Query: 545 DVKYPLIGAMREE 557
+ + + +
Sbjct: 321 NYR-TYFDGLSLQ 332
Score = 52.7 bits (126), Expect = 2e-07
Identities = 31/203 (15%), Positives = 55/203 (27%), Gaps = 37/203 (18%)
Query: 201 GGYDVPAVAGYLDFINLMA-----YDFHGK---WESQVGHNAPLRSPSSDSEWQLREAFE 252
G +P A FIN + Y F G ES + N + + +
Sbjct: 84 GVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLESGIYLNGNDTNFKNPT-TPQIVNLI 142
Query: 253 AEAQEVK---KPRLLLTAAVPVGPDNIKGG-----------YDVPAVAGYLDFINLMAYD 298
+ + + P LL+ A P G + V L +I++ Y+
Sbjct: 143 SAIRTISDHYGPDFLLSMA-PETAYVQGGYSAYGSIWGAYLPIIYGVKDKLTYIHVQHYN 201
Query: 299 FHGKWESQVGHNAPLRSPSSDSEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIG 358
+ + + L + F + + IG
Sbjct: 202 AGSGIGMDGNNYNQGTADYEVAMADMLLHGFPVGGNANNI--------FPALRSDQVMIG 253
Query: 359 APASGGGEPGKYTAEAGFMSYYE 381
PA+ G++S E
Sbjct: 254 LPAAPAA-----APSGGYISPTE 271
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP:
c.1.8.5
Length = 290
Score = 128 bits (322), Expect = 5e-33
Identities = 44/260 (16%), Positives = 85/260 (32%), Gaps = 32/260 (12%)
Query: 34 YTNWSQYRTKIGKFQPEDI-EPDLCTHIIFAFGWLKKGKLSSFESN-DETKDGKVGLYER 91
Y T + F E I L H I F + +E+ D ++ E+
Sbjct: 8 YIGVKPNSTTLHDFPTEIINTETLEFHYILGFAIESYYESGKGTGTFEESWDVELFGPEK 67
Query: 92 IEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRY-----SRQTFIYSAVPFLRQRNFDG 146
++ LK+ +P++K +++IGG T F ++ + I DG
Sbjct: 68 VKNLKRRHPEVKVVISIGGRGVNT-PFDPAEENVWVSNAKESLKLIIQKYSDDSGNLIDG 126
Query: 147 LDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVP 206
+DI +E+ + L+ +L KK L V + P +
Sbjct: 127 IDIHYEHIRSDEPFAT---LMGQLITEL-------KKDDDLNINVVSIAPSENNSSHYQK 176
Query: 207 AVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRLLLT 266
D+IN + Y F + + ++ E F++ ++ ++L
Sbjct: 177 LYNAKKDYINWVDYQFSNQQKPV------------STDDAFVEIFKSLEKDYHPHKVLP- 223
Query: 267 AAVPVGPDNIKGGYDVPAVA 286
P + K +
Sbjct: 224 -GFSTDPLDTKHNKITRDIF 242
Score = 48.2 bits (114), Expect = 4e-06
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 256 QEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNA 311
E+KK L V + P + D+IN + Y F + + +A
Sbjct: 149 TELKKDDDLNINVVSIAPSENNSSHYQKLYNAKKDYINWVDYQFSNQQKPVSTDDA 204
>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 1.75A {Lactococcus lactis
subsp}
Length = 321
Score = 122 bits (306), Expect = 1e-30
Identities = 45/266 (16%), Positives = 78/266 (29%), Gaps = 31/266 (11%)
Query: 30 VVCYYTNWSQ-----YRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGKLSSFESNDETKDG 84
+V Y+ NW Y+ + I +F +
Sbjct: 7 LVGYWHNWKSTGKDGYKGGSSADFNLSSTQEGYNVINVSF-MKTPEGQTLPTFKPYN-KT 64
Query: 85 KVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNF 144
I +L L+A+GG + F+ + + F
Sbjct: 65 DTEFRAEISKLNAEG--KSVLIALGGADAHI------ELKKSQESDFVNEIIRLVDTYGF 116
Query: 145 DGLDIDWEYPA--GTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGG 202
DGLDID E A D++ LK++++ + + ++T A P P G
Sbjct: 117 DGLDIDLEQAAIEAADNQTVIPSALKKVKDHYRKDG-----KNFMITMA-PEFPYLTSSG 170
Query: 203 YDVP---AVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVK 259
P + Y DFIN Y+ G N + + + +
Sbjct: 171 KYAPYINNLDSYYDFINPQYYNQGGDGFWDSDLNMWISQSNDEKKEDFLYGLTQRLVTGT 230
Query: 260 KPRLLLTAA-----VPVGPDNIKGGY 280
+ + A+ +P D GY
Sbjct: 231 DGFIKIPASKFVIGLPSNNDAAATGY 256
Score = 52.7 bits (126), Expect = 2e-07
Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 22/186 (11%)
Query: 207 AVAGYLDFINLMAYDFHGK---WESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRL 263
V + ++ Y F G E A ++ + ++++ + +
Sbjct: 103 FVNEIIRLVD--TYGFDGLDIDLEQAAIEAADNQTVIPSALKKVKDHYRKDG-----KNF 155
Query: 264 LLTAAVPVGPDNIKGGYDVP---AVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDS 320
++T A P P G P + Y DFIN Y+ G N + + +
Sbjct: 156 MITMA-PEFPYLTSSGKYAPYINNLDSYYDFINPQYYNQGGDGFWDSDLNMWISQSNDEK 214
Query: 321 EWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMSYY 380
+ + RL + F + +KF IG P++ Y + +
Sbjct: 215 ------KEDFLYGLTQRLVTGTDG--FIKIPASKFVIGLPSNNDAAATGYVKDPNAVKNA 266
Query: 381 EKYLPK 386
L
Sbjct: 267 LNRLKA 272
Score = 28.4 bits (63), Expect = 9.7
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 520 KDNGYGGAMVWTVDMDDFTG 539
N G M W+V+ D T
Sbjct: 273 SGNEIKGLMTWSVNWDAGTN 292
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
1.55A {Bacteroides thetaiotaomicron}
Length = 451
Score = 90.0 bits (222), Expect = 4e-19
Identities = 32/240 (13%), Positives = 66/240 (27%), Gaps = 27/240 (11%)
Query: 12 RRRLRRPSIKSKPERLLEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKGK 71
+ +R K E +++ ++ FQ E+ + ++ +
Sbjct: 152 VKDMRNAGDAYKGEGVMQGYLFFEVNDVNPLNTLSFQLENGKLLW-DVVVLFAANINYDA 210
Query: 72 LSSFESNDETKDGKVGLYERIEQLKK-ANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQT 130
+ + + L L+ +K LL + G T ++S+ +
Sbjct: 211 EAGRPRVQCNPNVQYLLDNNETLLQPLRRRGVKVLLGLLGNHDITG-LAQLSEQ--GAKD 267
Query: 131 FIYSAVPFLRQRNFDGLDIDWEYPA---------GTDDKKNYVLLLKELREAFEAEAQEV 181
F + + N DG++ D EY L E ++A
Sbjct: 268 FAREVAQYCKAYNLDGVNYDDEYSNSPDLSNPSLTNPSTAAAARLCYETKQAM------- 320
Query: 182 KKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSS 241
P L+T G D ++D + ++ S S
Sbjct: 321 --PDKLVTVFDW-GQMYGVATVDGVDAKEWIDI---VVANYGSAAYPIGQMTKKQCSGIS 374
Score = 29.9 bits (66), Expect = 3.1
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 6/65 (9%)
Query: 256 QEVKK--PRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPL 313
E K+ P L+T G D ++D + ++
Sbjct: 314 YETKQAMPDKLVTVFDW-GQMYGVATVDGVDAKEWIDI---VVANYGSAAYPIGQMTKKQ 369
Query: 314 RSPSS 318
S S
Sbjct: 370 CSGIS 374
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
unknown function, hydrolase, PSI-2, protein structure
initiative; 1.50A {Streptomyces coelicolor}
Length = 302
Score = 86.9 bits (215), Expect = 8e-19
Identities = 48/265 (18%), Positives = 82/265 (30%), Gaps = 37/265 (13%)
Query: 30 VVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAF------GWLKKGKLSSFESNDETKD 83
V Y+ N++ T Q P I AF L S T D
Sbjct: 7 VTGYWQNFNNGAT----VQKISDVPSAYDIIAVAFADATTTPGAVTFNLDSAGLGGYTVD 62
Query: 84 GKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRN 143
+ + A K ++++GG S S F S +R+
Sbjct: 63 QFK---ADVRAKQAAG--KKVIISVGGEKGTVS-----VNSSASATNFANSVYSVMREYG 112
Query: 144 FDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAA-VPVGPDNIKGG 202
FDG+DID E L+ L P ++LT A + + +GG
Sbjct: 113 FDGVDIDLENGLNPT---YMTQALRALSAKA--------GPDMILTMAPQTIDMQSTQGG 161
Query: 203 YDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPR 262
Y D + ++ ++ + +G + + ++ A + +
Sbjct: 162 Y-FQTALNVKDILTVVNMQYYNSG-TMLGCDGKV-YAQGTVDFLTALACIQLEGGLAPSQ 218
Query: 263 LLLTAAVPVGPDNIKGGYDVPAVAG 287
+ L +P GGY P+V
Sbjct: 219 VGL--GLPASTRAAGGGYVSPSVVN 241
Score = 38.7 bits (90), Expect = 0.004
Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 25/119 (21%)
Query: 261 PRLLLTAA-VPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKWESQVGHNAPLRSPSSD 319
P ++LT A + + +GGY D + ++ ++ + +G + + + +
Sbjct: 142 PDMILTMAPQTIDMQSTQGGY-FQTALNVKDILTVVNMQYYNSG-TMLGCDGKVYAQGTV 199
Query: 320 SEWRKQLSVENAANMWVRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGFMS 378
A ++L + P++ +G PAS A G++S
Sbjct: 200 DFL--------TALACIQLEGG--------LAPSQVGLGLPASTRA------AGGGYVS 236
Score = 31.4 bits (71), Expect = 0.98
Identities = 15/119 (12%), Positives = 28/119 (23%), Gaps = 37/119 (31%)
Query: 444 VDPTKFDIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGYVWDDEMKVPYLVHGDQW 503
+ P++ +G PAS G GYV +
Sbjct: 214 LAPSQVGLGLPASTRA----------------------AGGGYVSPSVVN-------AAL 244
Query: 504 VGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREELNGIP 562
+ GAM W+ + D G ++ ++ +
Sbjct: 245 DCLTKATNCGSFKPSKTYPDLRGAMTWSTNWDATAG--------NAWSNSVGAHVHALE 295
>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT
barrel, hydrolase; 1.50A {Pyrococcus furiosus} PDB:
3a4w_A* 3a4x_A* 3afb_A
Length = 311
Score = 71.6 bits (175), Expect = 1e-13
Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 29/175 (16%)
Query: 58 THIIFAFGWLKKGKLSSFESNDETKDGKVGLYE---RIEQLKKANPKLKTLLAIGGWSFG 114
+ AF L S N G + L + + +L++ ++ ++A GG G
Sbjct: 36 KYFTLAFI------LYSSVYNGPAWAGSIPLEKFVDEVRELREIGGEV--IIAFGGAV-G 86
Query: 115 TQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAF 174
+ + + + + + N LD D E D + +L+++ R
Sbjct: 87 P----YLCQQASTPEQLAEWYIKVIDTYNATYLDFDIEAGIDADKLADALLIVQRER--- 139
Query: 175 EAEAQEVKKPRLLLTAAV-PVGPDNIKGGYDVPAVAG--YLDFINLMAYDFHGKW 226
+ T P G +D +N M D++
Sbjct: 140 -------PWVKFSFTLPSDPGIGLAGGYGIIETMAKKGVRVDRVNPMTMDYYWTP 187
Score = 39.7 bits (92), Expect = 0.003
Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 11/119 (9%)
Query: 256 QEVKKPRLLLTAAV-PVGPDNIKGGYDVPAVAG--YLDFINLMAYDFHGKWESQVGHNAP 312
+E + T P G +D +N M D++ NA
Sbjct: 137 RERPWVKFSFTLPSDPGIGLAGGYGIIETMAKKGVRVDRVNPMTMDYYWTP--SNAENAI 194
Query: 313 LRSPSSDSEWRKQLSVENAANMWVRLGAPK------EQASFTLVDPTKFDIGAPASGGG 365
+ + + ++ ++ +W +G +++ FTL D + A G
Sbjct: 195 KVAENVFRQLKQIYPEKSDEEIWKMIGLTPMIGVNDDKSVFTLEDAQQLVDWAIQHKIG 253
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.2 bits (135), Expect = 4e-08
Identities = 92/582 (15%), Positives = 163/582 (28%), Gaps = 223/582 (38%)
Query: 11 ARRRLRRPSIKSKPERLLEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTHIIFAFGWLKKG 70
AR +RP K L V
Sbjct: 129 ARIMAKRPFDKKSNSALFRAV--------------------------------------- 149
Query: 71 KLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQK-----FKEMSKSR 125
+G L AI FG Q F+E+ +
Sbjct: 150 -----------GEGNAQLV-----------------AI----FGGQGNTDDYFEEL-RDL 176
Query: 126 YSR-----QTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQE 180
Y I + L + LD + + G + +L+ L ++
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-------ILEWLENPSNTPDKD 229
Query: 181 VKKPRLLLTAAV--PVGPDNIKGGYDVPAVAGYLDFINLMAY---DFHGKWESQVGHNAP 235
LL+ + P+ I G V +A Y+ L+ + + + GH+
Sbjct: 230 Y-----LLSIPISCPL----I-G---VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 236 LRSP----SSDSEWQ---------LREAFE--AEAQEVKKPRLLLTAAVPVGPDNIKGGY 280
L + +DS W+ + F E P L ++ D+++
Sbjct: 277 LVTAVAIAETDS-WESFFVSVRKAITVLFFIGVRCYEA-YPNTSLPPSILE--DSLENNE 332
Query: 281 DVP----AVAGYLDFINLMAYDFHGKWESQVGH-NAPLRSPSSDSEWRKQLSVENAANMW 335
VP +++ L + + V N+ L P+ + ++S+ N A
Sbjct: 333 GVPSPMLSISN-LTQEQV---------QDYVNKTNSHL--PAGK---QVEISLVNGAKNL 377
Query: 336 VRLGAPKEQASFTLVDPTKFDIGAPASGGGEPGKYTAEAGF----MSYYEKYLPKEKLII 391
V G P+ S ++ T AP G + F + + ++LP +
Sbjct: 378 VVSGPPQ---SLYGLNLTLRKAKAP------SGLDQSRIPFSERKLKFSNRFLP-----V 423
Query: 392 GMPTYGRTF--TLTNPAVFKVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKF 449
P F L PA +N + + + + I P Y +F D
Sbjct: 424 ASP-----FHSHLLVPASDLINKDL----VKNNVSFNAKDIQI--PVYD-TFDGSDLRVL 471
Query: 450 DIGAPASGGGEPGKYTAEAGFMSYYEVCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDE 509
+ + + +++P V W E
Sbjct: 472 SGSISER-------------------IVDCI-----------IRLP--VK---W-----E 491
Query: 510 KSIRYKMNWLKDNGYGGAM---VWTVDMDDFTG--TVCGGDV 546
+ ++K + D G GGA V T D TG + G +
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 52.0 bits (124), Expect = 7e-07
Identities = 50/275 (18%), Positives = 80/275 (29%), Gaps = 91/275 (33%)
Query: 75 FESNDETKDGKVGLYERIEQLKKANPKLKTLLAIGGWSFGTQKFKEMSKSRYSRQTF--- 131
+ D G I + NP T+ FG +K K + + YS F
Sbjct: 1646 WNRADNHFKDTYGF--SILDIVINNPVNLTIH------FGGEKGKRI-RENYSAMIFETI 1696
Query: 132 ---IYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLL 188
++ N + G +L + F Q P L L
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKG-------LLSATQ----F---TQ----PALTL 1738
Query: 189 T--AAVPVGPDNIK--GGYDVP---------------AVAGYLDF---INLMAY------ 220
AA +K G ++A + + ++ Y
Sbjct: 1739 MEKAAFED----LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 221 -----DFHGKWESQVGHNA--PLRSPSSDSEWQLREAFEAEAQEV-KKPRLLLTAAVPVG 272
D G+ S G A P R +S S+ EA + + V K+ L+
Sbjct: 1795 VAVPRDELGR--SNYGMIAINPGRVAASFSQ----EALQYVVERVGKRTGWLVEIV---- 1844
Query: 273 PDNIKGG-Y----DVPAV---AGYLDFINLMAYDF 299
N++ Y D+ A+ L+FI L D
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Score = 50.8 bits (121), Expect = 2e-06
Identities = 58/303 (19%), Positives = 97/303 (32%), Gaps = 102/303 (33%)
Query: 331 AANMWVRLGA---PKEQASFTLVD-----PTKFDIGAPASGGGEPGKYTAEAGFMSY-YE 381
A ++W R A K+ F+++D P I GGE GK E + + +E
Sbjct: 1642 AQDVWNR--ADNHFKDTYGFSILDIVINNPVNLTI----HFGGEKGKRIRE-NYSAMIFE 1694
Query: 382 KY----LPKEKLI--IGMPTYGRTF-------TLTN---PAVFKVNSPASGGGKAGEYTI 425
L EK+ I + TF + T PA+ + A+ +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM-EKAA-------FED 1746
Query: 426 SKEKLMIGMPTY--GRSFTLVDPTKFDIGAPASGGGEPGKYTA---EAGFMSYYEVCEML 480
K K +I G S L GE Y A A MS + E++
Sbjct: 1747 LKSKGLIPADATFAGHS--L---------------GE---YAALASLADVMSIESLVEVV 1786
Query: 481 RN-G---AGYVWDDEM-KVPY----LVHGDQWVGFDDE------KSIRYKMNWLK----D 521
G V DE+ + Y + G F E + + + WL
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 522 NGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREELNGIPRANNAKDVDWAKVAGNVEV 581
N V GD++ A+ + + + + +D ++ ++ +
Sbjct: 1847 NVENQ----QY--------VAAGDLR-----AL-DTVTNVLNFIKLQKIDIIELQKSLSL 1888
Query: 582 ETV 584
E V
Sbjct: 1889 EEV 1891
Score = 37.0 bits (85), Expect = 0.031
Identities = 89/549 (16%), Positives = 158/549 (28%), Gaps = 207/549 (37%)
Query: 223 HGKWESQVGHNAPLRSPSSDSEW----QLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKG 278
HG E H + P++ + QL+E F +P +
Sbjct: 13 HGSLE----HVLLV--PTAS--FFIASQLQEQF--------------NKILPEPTEGFAA 50
Query: 279 GYDVPA-----VAGYLDFI-------NLMAYD---------FHGKWESQV--GHN----- 310
D P V +L ++ + +D F E+ G++
Sbjct: 51 D-DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF----ENCYLEGNDIHALA 105
Query: 311 APLRSPSSDSEWRKQLSVEN--AANMWVRLGAPKEQAS--FTLVDPTKFDIGAPASGG-G 365
A L + + + + ++N A + + K+ S F V + A GG G
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-IFGGQG 164
Query: 366 EPGKYTAEAGFMSYYEKYLP-KEKLIIGM---------------PTYGRTFT----LTNP 405
Y E Y+ Y LI + + L NP
Sbjct: 165 NTDDYFEE--LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 406 AVFKVNSPASGGGKAGEYTISKEKLMIGMPTYGRSFTLVDPTKFDIGAPASGGGEPGKYT 465
+ N+P +Y +S I P G ++ + + A G PG
Sbjct: 223 S----NTPDK------DYLLSIP---ISCPLIG----VIQLAHYVVTAKLL-GFTPG--- 261
Query: 466 AEAGFMSYYEVCEMLRNGAGYVWDDEMKVPYLV------HGDQWVGFDD--EKSIRYKMN 517
E+ L+ G+ LV D W F K+I +
Sbjct: 262 ---------ELRSYLKGATGHSQG-------LVTAVAIAETDSWESFFVSVRKAITV-LF 304
Query: 518 WLKDNG------YGGAMVWTVDMDDFTGTVCGGDVKYP-----LIGAMREELNG-IPRAN 565
++ G Y + ++D G P + +E++ + + N
Sbjct: 305 FI---GVRCYEAYPNTSLPPSILEDSLENNEGV----PSPMLSISNLTQEQVQDYVNKTN 357
Query: 566 --------------NAKD--VDWAKVAG--------NVEVETVTKPAPIKIDVSEL-LSK 600
N V V+G N+ + AP +D S + S+
Sbjct: 358 SHLPAGKQVEISLVNGAKNLV----VSGPPQSLYGLNLTLRKAK--APSGLDQSRIPFSE 411
Query: 601 KKTTTIQK-------------QETSNLIDTKAARRRLRRPSIKSK----P---SEDSGD- 639
+K + S+LI+ + + S +K P + D D
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV---SFNAKDIQIPVYDTFDGSDL 468
Query: 640 QDVSASINR 648
+ +S SI+
Sbjct: 469 RVLSGSISE 477
>2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea brasiliensis}
SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A* 1kr1_A*
1kqy_A* 1kqz_A*
Length = 273
Score = 39.3 bits (91), Expect = 0.003
Identities = 37/238 (15%), Positives = 77/238 (32%), Gaps = 39/238 (16%)
Query: 53 EPDLCTHIIFAF----GWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAI 108
+++ AF G + +++ + G + I + +K +L++
Sbjct: 21 STRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVSNGIRSCQIQG--IKVMLSL 78
Query: 109 GGWSFG-----TQKFKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNY 163
GG K ++ ++ S+ L DG+D D E+ + +
Sbjct: 79 GGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLDGIDFDIEHGSTL----YW 134
Query: 164 VLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVA-GYLDFINLMAYDF 222
L + L K+ + + A P P Y A+ G D++ + Y
Sbjct: 135 DDLARYLSAYS-------KQGKKVYLTAAPQCPFP--DRYLGTALNTGLFDYVWVQFY-- 183
Query: 223 HGKWESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGY 280
N P SS + + ++ + ++ L +P P+ GY
Sbjct: 184 ----------NNPPCQYSSGNINNIINSWNRWTTSINAGKIFL--GLPAAPEAAGSGY 229
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 0.003
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 16/41 (39%)
Query: 177 EAQEVKKPRLLLTAAV-PVGPDNIKGGYDVPAVAGYLDFIN 216
E Q +KK L A++ D+ PA+A I
Sbjct: 18 EKQALKK----LQASLKLYADDS------APALA-----IK 43
Score = 38.0 bits (87), Expect = 0.003
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 16/41 (39%)
Query: 254 EAQEVKKPRLLLTAAV-PVGPDNIKGGYDVPAVAGYLDFIN 293
E Q +KK L A++ D+ PA+A I
Sbjct: 18 EKQALKK----LQASLKLYADDS------APALA-----IK 43
>2xtk_A CHIA1, class III chitinase CHIA1; hydrolase, GH18; HET: AZM; 2.00A
{Aspergillus fumigatus} PDB: 2xuc_A 2xvp_A 2xvn_A*
Length = 310
Score = 39.4 bits (91), Expect = 0.003
Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 19/128 (14%)
Query: 103 KTLLAIGGWSFGTQKFKEMSKSR---------YSRQTFIYSAVPFLRQRNFDGLDIDWEY 153
K LL+IGG Q + + + DG D D E+
Sbjct: 89 KVLLSIGGAYPPDQSILSEDSAVAFATFLWGAFGPVAEGWEGPRPFGDVVVDGFDFDIEH 148
Query: 154 PAGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLD 213
G Y ++ R+ F Q ++ L A + PD D
Sbjct: 149 NGGF----GYATMVNTFRQYF---NQVPERKFYLSAAPQCIIPDAQLSDA---IFNAAFD 198
Query: 214 FINLMAYD 221
FI + Y+
Sbjct: 199 FIWIQYYN 206
>1cnv_A Concanavalin B; plant chitinase, chitin binding protein, SEED
protein; 1.65A {Canavalia ensiformis} SCOP: c.1.8.5
Length = 299
Score = 37.4 bits (86), Expect = 0.014
Identities = 39/238 (16%), Positives = 73/238 (30%), Gaps = 36/238 (15%)
Query: 58 THIIFAF------GWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLKTLLAIGGW 111
+ +F K + L +I++ ++ +K LA+GG
Sbjct: 29 KIVFISFLDKFGCEIRKPELELEGVCGPSVGNPCSFLESQIKECQRMG--VKVFLALGGP 86
Query: 112 SFGTQKFKEMSKSRYSRQTFIYSAVPFLRQRNF-----DGLDIDWEYPAGTDDKKNYVLL 166
GT ++ + + R+ DG+ D + P N+ L
Sbjct: 87 K-GTYSACSADYAKDLAEYLHTYFLSERREGPLGKVALDGIHFDIQKPVDEL---NWDNL 142
Query: 167 LKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDFINLMAYDFHGKW 226
L+EL + + LL A + PD + D+I + Y
Sbjct: 143 LEELYQIK----DVYQSTFLLSAAPGCLSPDEYLDNA---IQTRHFDYIFVRFY------ 189
Query: 227 ESQVGHNAPLRSPSSDSEWQLREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPA 284
N S+ + ++R A+ + + V L +P GG +P
Sbjct: 190 ------NDRSCQYSTGNIQRIRNAWLSWTKSVYPRDKNLFLELPASQATAPGGGYIPP 241
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G*
Length = 334
Score = 34.9 bits (80), Expect = 0.085
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 14/113 (12%)
Query: 504 VGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREELNGIPR 563
+ FD ++ ++ L N A +W + + F G + D + ++
Sbjct: 35 IVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMAD----FVNVIKYYYQSSSF 90
Query: 564 ANNAKDVDWAKVAGNVEV---ETVTKPAPIKI-------DVSELLSKKKTTTI 606
++D ++ G EV P I + D +SK + I
Sbjct: 91 PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRI 143
>1ta3_A XIP-1, xylanase inhibitor protein I; beta alpha barrel (XIP-I),
beta alpha barrel (xylanase), HYD inhibitor-hydrolase
complex; HET: NAG; 1.70A {Triticum aestivum} SCOP:
c.1.8.5 PDB: 1om0_A* 1te1_A*
Length = 274
Score = 34.2 bits (78), Expect = 0.12
Identities = 19/137 (13%), Positives = 34/137 (24%), Gaps = 16/137 (11%)
Query: 103 KTLLAIGGWSFGTQKFKEMSKSRYSRQTFI--------YSAVPFLRQRNFDGLDIDWEYP 154
L+IGG+ + S DG+D+ E+
Sbjct: 72 PVSLSIGGYG-TGYSLPSNRSALDLFDHLWNSYFGGSKPSVPRPFGDAWLDGVDLFLEHG 130
Query: 155 AGTDDKKNYVLLLKELREAFEAEAQEVKKPRLLLTAAVPVGPDNIKGGYDVPAVAGYLDF 214
D Y +L EL + + L A G +
Sbjct: 131 TPAD---RYDVLALELAKHNIRG----GPGKPLHLTATVRCGYPPAAHVGRALATGIFER 183
Query: 215 INLMAYDFHGKWESQVG 231
+++ Y+ +G
Sbjct: 184 VHVRTYESDKWCNQNLG 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.14
Identities = 30/207 (14%), Positives = 66/207 (31%), Gaps = 29/207 (14%)
Query: 2 LKHHLHCEPARRRLRR--PSIKSKPERLLEVVCYYTNWSQYRTKIGKFQPEDIEPDLCTH 59
+ H + + A R ++ SK E +++ Y+ + + E +P + T
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 60 IIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPKLK-----TLLAIGGWSFG 114
+ ++ +L + N V + +L++A +L+ + + G G
Sbjct: 111 MYIE----QRDRL--YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--SG 162
Query: 115 TQKFKEMSKSRYSRQTFIYSAVPF---LRQRNFDGL----------DIDWEYPAGTDDKK 161
Y Q + + F L+ N ID + + +D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 162 NYVLLLKELREAFEAEAQEVKKPRLLL 188
N L + ++ + LL
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLL 248
>1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase;
1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5
PDB: 1eom_A*
Length = 290
Score = 33.0 bits (74), Expect = 0.32
Identities = 21/201 (10%), Positives = 45/201 (22%), Gaps = 27/201 (13%)
Query: 60 IIFAFGWLKKGKLSSFESNDETKDGKVGLYERIEQLKKANPK-LKTLLAIGGWSFGTQKF 118
I+F + + + Q++ + +K L I
Sbjct: 37 ILFGLKYWSLQDTTKLPGGTGMMGSFKSYKDLDTQIRSLQSRGIKVLQNIDDDVSWQSSK 96
Query: 119 KEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDKKNYVLLLKELREAFEAEA 178
S + I S V + + DG+ +D E+ +
Sbjct: 97 PGGFASAAAYGDAIKSIV--IDKWKLDGISLDIEHSGAKPNPIPTFPGYAATGYNGWYSG 154
Query: 179 QEVKKPRLLLTAAV------PVGPDNIKGGYD-----------VPAVAGYLDFINLMAY- 220
P L + P+N + + ++I L +Y
Sbjct: 155 SMAATPAFLNVISELTKYFGTTAPNNKQLQIASGIDVYAWNKIMENFRNNFNYIQLQSYG 214
Query: 221 ------DFHGKWESQVGHNAP 235
+ +
Sbjct: 215 ANVSRTQLMMNYATGTNKIPA 235
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 30.3 bits (68), Expect = 2.3
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 12/106 (11%)
Query: 504 VGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREELNGIPR 563
V FD ++ L NG A +W F G + D I +
Sbjct: 48 VVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITD----FINILHRYYKSALV 103
Query: 564 ANNAKDVDWAKVAGNVEVETVTKPAPIKI-------DVSELLSKKK 602
+ + V ++ KP + I D L + K
Sbjct: 104 QIYELEEHKIETWREVYLQDSFKP-LVCISPNASLFDAVSSLIRNK 148
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 30.5 bits (69), Expect = 2.5
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 3/105 (2%)
Query: 617 TKAARRRLRRPSIKSKPSEDSGDQDVSASINRFKLKNRTAASSANSAVIAAGSSKSSVKA 676
T ++ ++P + S + + + SI++ + +R + + +
Sbjct: 77 TLKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEESEGERNGEEANDE 136
Query: 677 SKDDPKYKVSLLVVRSSKSSVKANKDDPKYKVSLVVVG---SSKS 718
YK ++ + A +S VV+G + KS
Sbjct: 137 KTVQRYYKTTVPTKPKKPHDISAFVKSALPHLSFVVLGHVDAGKS 181
>2ox7_A Hypothetical protein; structural genomics, PSI, protein STRU
initiative, NEW YORK structural genomics research
consortiu nysgrc; 1.78A {Enterococcus faecalis} SCOP:
b.172.1.1
Length = 155
Score = 29.4 bits (65), Expect = 2.5
Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 5/120 (4%)
Query: 464 YTAEAGFMSYYEVCEMLRNGAGYVWDDEMKVPYLVHGDQWVGFDDEKSIRYKMNWLKD-N 522
F + ++ + ++ + D +D+ + + LKD N
Sbjct: 19 ENVTPLFDDSNSMIAIITDFQIKGSPGTSEIEIGSY-DTTFNWDEFPYVIMQSTGLKDKN 77
Query: 523 G---YGGAMVWTVDMDDFTGTVCGGDVKYPLIGAMREELNGIPRANNAKDVDWAKVAGNV 579
G + G ++ + ++ Y E L+ + +N D V GN+
Sbjct: 78 GVEIFEGDILVYDAPKKYAHRRSMHEIAYADGRFFWEFLDLVFCQSNILYRDGYLVIGNI 137
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 29.9 bits (67), Expect = 2.9
Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 11/191 (5%)
Query: 504 VGFDDEKSIRYKMNWLKDNGYGGAMVWTVDMDDFTGTVCGGD----VKYPLIGAMREELN 559
+ D ++ +N L N A +W F G + D ++Y + EL
Sbjct: 43 IVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELV 102
Query: 560 GIPRANNAKDVDWAKVAGNVEVETVTKPAPIKIDVSELLSKKKTTTIQKQETSNLIDTKA 619
+ + KD++ A ++ ++ P+ + + + ++ I LID
Sbjct: 103 DKLQLDGLKDIERALGVDQLDTASIHPSRPLF-EACLKMLESRSGRIP------LIDQDE 155
Query: 620 ARRRLRRPSIKSKPSEDSGDQDVSASINRFKLKNRTAASSANSAVIAAGSSKSSVKASKD 679
R S+ ++ + K+ + + + + +
Sbjct: 156 ETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQM 215
Query: 680 DPKYKVSLLVV 690
+ +VS + +
Sbjct: 216 LTQGRVSSVPI 226
>2w91_A Endo-beta-N-acetylglucosaminidase D; hydrolase, N-glycan, secreted,
oxazoline, NAG-thiazoline, substrate-participation;
1.40A {Streptococcus pneumoniae} PDB: 2w92_A*
Length = 653
Score = 30.2 bits (67), Expect = 3.3
Identities = 6/57 (10%), Positives = 15/57 (26%), Gaps = 2/57 (3%)
Query: 118 FKEMSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWE--YPAGTDDKKNYVLLLKELRE 172
+ + + V + +DG I+ E + + +E
Sbjct: 136 AEALKQDADGSFPIARKLVDMAKYYGYDGYFINQETTGDLVKPLGEKMRQFMLYSKE 192
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85,
glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A
{Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*
Length = 626
Score = 29.4 bits (65), Expect = 6.0
Identities = 7/54 (12%), Positives = 15/54 (27%), Gaps = 1/54 (1%)
Query: 121 MSKSRYSRQTFIYSAVPFLRQRNFDGLDIDWEYPAGTDDK-KNYVLLLKELREA 173
+ + + FDG I+ + + + L L+E
Sbjct: 147 LEQEEDGSFPLADKLLEVADYYGFDGWFINQQTEGADEGTAEAMQAFLVYLQEQ 200
>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel,
interaction network, transcription, cell cycle; 1.55A
{Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A
Length = 104
Score = 27.5 bits (61), Expect = 6.2
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 73 SSFESNDETKDGKVGLYERIEQLKKANPKLKTL 105
+ +ES +E +G +YE E LK+ NP ++
Sbjct: 20 ADYESVNECMEGVCKMYE--EHLKRMNPNSPSI 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.396
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,727,800
Number of extensions: 730551
Number of successful extensions: 1502
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1234
Number of HSP's successfully gapped: 154
Length of query: 743
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 642
Effective length of database: 3,881,772
Effective search space: 2492097624
Effective search space used: 2492097624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.8 bits)