BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14885
(483 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CII|G Chain G, Structure Of Nkg2aCD94 BOUND TO HLA-E
pdb|3CII|I Chain I, Structure Of Nkg2aCD94 BOUND TO HLA-E
Length = 121
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI--MYQLFW 83
C + WV YR +CY F+ S KT N+++ C S S L + + DE F+ Q +W
Sbjct: 3 CQEKWVGYRCNCY-FISSEQKTWNESRHLCASQKSSLLQLQNTDELDFMSSSQQFYW 58
>pdb|3BDW|A Chain A, Human Cd94NKG2A
pdb|3BDW|C Chain C, Human Cd94NKG2A
pdb|3CDG|J Chain J, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CDG|E Chain E, Human Cd94NKG2A IN COMPLEX WITH HLA-E
Length = 123
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI--MYQLFW 83
C + WV YR +CY F+ S KT N+++ C S S L + + DE F+ Q +W
Sbjct: 5 CQEKWVGYRCNCY-FISSEQKTWNESRHLCASQKSSLLQLQNTDELDFMSSSQQFYW 60
>pdb|1B6E|A Chain A, Human Cd94
Length = 128
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI--MYQLFW 83
C + WV YR +CY F+ S KT N+++ C S S L + + DE F+ Q +W
Sbjct: 10 CQEKWVGYRCNCY-FISSEQKTWNESRHLCASQKSSLLQLQNTDELDFMSSSQQFYW 65
>pdb|3BDW|B Chain B, Human Cd94NKG2A
pdb|3BDW|D Chain D, Human Cd94NKG2A
pdb|3CDG|K Chain K, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CDG|F Chain F, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CII|H Chain H, Structure Of Nkg2aCD94 BOUND TO HLA-E
pdb|3CII|J Chain J, Structure Of Nkg2aCD94 BOUND TO HLA-E
Length = 120
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP+ W+ Y +SCY ++ +T ++ L C S +S L ++++ +E F+
Sbjct: 6 HCPEEWITYSNSCY-YIGKERRTWEESLLACTSKNSSLLSIDNEEEMKFL 54
>pdb|1DV8|A Chain A, Crystal Structure Of The Carbohydrate Recognition Domain
Of The H1 Subunit Of The Asialoglycoprotein Receptor
Length = 128
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP +WV++ SCY F +S K DA C+ D+ L V +E F+ + +
Sbjct: 1 CPVNWVEHERSCYWFSRSG-KAWADADNYCRLEDAHLVVVTSWEEQKFVQHHI----GPV 55
Query: 89 RKWYFGGTQQSPNLWVNEDD 108
W Q P WV+ D
Sbjct: 56 NTWMGLHDQNGPWKWVDGTD 75
>pdb|3GPR|D Chain D, Crystal Structure Of Rhodocetin
Length = 124
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFI 77
CP HW Y CYR V S LKT DA+ C + S LA+++ +E F+
Sbjct: 1 CPLHWSSYNGYCYR-VFSELKTWEDAESFCYAQHKGSRLASIHSREEEAFV 50
>pdb|3T3A|A Chain A, Crystal Structure Of H107r Mutant Of Extracellular
Domain Of Mouse Receptor Nkr-P1a
pdb|3T3A|B Chain B, Crystal Structure Of H107r Mutant Of Extracellular
Domain Of Mouse Receptor Nkr-P1a
Length = 139
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM------Y 79
+L CPQ W+ +RD C+R V T + ++C + L + D +E F++ Y
Sbjct: 3 KLECPQDWLSHRDKCFR-VSQVSNTWEEGLVDCDGKGATLMLIQDQEELRFLLDSIKEKY 61
Query: 80 QLFW 83
FW
Sbjct: 62 NSFW 65
>pdb|1HQ8|A Chain A, Crystal Structure Of The Murine Nk Cell-Activating
Receptor Nkg2d At 1.95 A
pdb|1JSK|A Chain A, Crystal Structure Of Murine Nk Cell Ligand Rae-1 Beta In
Complex With Nkg2d
pdb|1JSK|B Chain B, Crystal Structure Of Murine Nk Cell Ligand Rae-1 Beta In
Complex With Nkg2d
Length = 123
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP +W+ +R++CY+F KT N ++ +C S +S L + +E F+
Sbjct: 6 CPNNWICHRNNCYQFFNEE-KTWNQSQASCLSQNSSLLKIYSKEEQDFL 53
>pdb|2KV3|A Chain A, Human Regenerating Gene Type Iv (Reg Iv) Protein, P91s
Mutant
Length = 131
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
C W ++ +CY + + L+ +DA+L C+S + LA++ E I
Sbjct: 3 CAPGWFYHKSNCYGYFR-KLRNWSDAELECQSYGNGAHLASILSLKEASTIAE------- 54
Query: 87 QRRKWYFGGTQQSPNLWVNEDDPQRRK 113
Y G Q+S ++W+ DPQ+R+
Sbjct: 55 -----YISGYQRSQSIWIGLHDPQKRQ 76
>pdb|3VPP|A Chain A, Crystal Structure Of The Human Clec9a C-Type Lectin-Like
Domain
pdb|3VPP|B Chain B, Crystal Structure Of The Human Clec9a C-Type Lectin-Like
Domain
Length = 132
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------- 81
CP +W+Q R+SCY +V + ++ NC S L + +E FI L
Sbjct: 4 CPNNWIQNRESCY-YVSEIWSIWHTSQENCLKEGSTLLQIESKEEMDFITGSLRKIKGSY 62
Query: 82 -FW----QDPQRRKWYF-GGTQQSPNL 102
+W QD +W + G+ SP L
Sbjct: 63 DYWVGLSQDGHSGRWLWQDGSSPSPGL 89
>pdb|2OX8|A Chain A, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|B Chain B, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|C Chain C, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|D Chain D, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain
Length = 140
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP HW + D CY F + DAKL C+ S L +N +E +I Q+ R
Sbjct: 5 CPPHWKNFTDKCYYFSVEK-EIFEDAKLFCEDKSSHLVFINTREEQQWIKKQMV----GR 59
Query: 89 RKWYFGGT---QQSPNLWVNEDDPQRRKWYFGGTQQSPNLWVNEDG 131
+ G T +++ W++ P + W G P+ W + G
Sbjct: 60 ESHWIGLTDSERENEWKWLDGTSPDYKNWKAG----QPDNWGHGHG 101
>pdb|3M9Z|A Chain A, Crystal Structure Of Extracellular Domain Of Mouse
Nkr-P1a
Length = 139
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM------Y 79
+L CPQ W+ +RD C+ V T + ++C + L + D +E F++ Y
Sbjct: 3 KLECPQDWLSHRDKCFH-VSQVSNTWEEGLVDCDGKGATLMLIQDQEELRFLLDSIKEKY 61
Query: 80 QLFW 83
FW
Sbjct: 62 NSFW 65
>pdb|1T8C|A Chain A, Structure Of The C-Type Lectin Domain Of Cd23
pdb|1T8D|A Chain A, Structure Of The C-Type Lectin Domain Of Cd23
pdb|4EZM|G Chain G, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|H Chain H, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|I Chain I, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|J Chain J, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|K Chain K, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|L Chain L, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
Length = 143
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP+ W+ ++ CY F K K A+ C ++ L +++ +E F+
Sbjct: 8 CPEKWINFQRKCYYFGKGT-KQWVHARYACDDMEGQLVSIHSPEEQDFL 55
>pdb|3VLG|A Chain A, Crystal Structure Of The W150a Mutant Lox-1 Ctld Showing
Impaired Oxldl Binding
Length = 145
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------F 82
CPQ W+ + ++CY F + C SLD+ L +N + FI + F
Sbjct: 16 CPQDWIAHGENCYLFSSGSFNWEKSQE-KCLSLDAKLLKINSTADLDFIQQAISYSSFPF 74
Query: 83 WQDPQRR 89
W RR
Sbjct: 75 WMGLSRR 81
>pdb|1YPO|A Chain A, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3
1 21 Space Group
pdb|1YPO|B Chain B, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3
1 21 Space Group
pdb|1YPO|C Chain C, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3
1 21 Space Group
pdb|1YPO|D Chain D, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3
1 21 Space Group
pdb|1YPO|E Chain E, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3
1 21 Space Group
pdb|1YPO|F Chain F, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3
1 21 Space Group
pdb|1YPO|G Chain G, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3
1 21 Space Group
pdb|1YPO|H Chain H, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3
1 21 Space Group
Length = 132
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------F 82
CPQ W+ + ++CY F + C SLD+ L +N + FI + F
Sbjct: 4 CPQDWIWHGENCYLFSSGSFNWEKSQE-KCLSLDAKLLKINSTADLDFIQQAISYSSFPF 62
Query: 83 WQDPQRR 89
W RR
Sbjct: 63 WMGLSRR 69
>pdb|1YPQ|A Chain A, Human Oxidized Low Density Lipoprotein Receptor Lox-1
Dioxane Complex
pdb|1YPQ|B Chain B, Human Oxidized Low Density Lipoprotein Receptor Lox-1
Dioxane Complex
pdb|1YPU|A Chain A, Human Oxidized Low Density Lipoprotein Receptor Lox-1 C2
Space Group
pdb|1YPU|B Chain B, Human Oxidized Low Density Lipoprotein Receptor Lox-1 C2
Space Group
pdb|1YXK|A Chain A, Crystal Structure Of Human Lectin-Like Oxidized
Low-Density Lipoprotein Receptor 1 (Lox-1)
Disulfide-Linked Dimer
pdb|1YXK|B Chain B, Crystal Structure Of Human Lectin-Like Oxidized
Low-Density Lipoprotein Receptor 1 (Lox-1)
Disulfide-Linked Dimer
Length = 135
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------F 82
CPQ W+ + ++CY F + C SLD+ L +N + FI + F
Sbjct: 9 CPQDWIWHGENCYLFSSGSFNWEKSQE-KCLSLDAKLLKINSTADLDFIQQAISYSSFPF 67
Query: 83 WQDPQRR 89
W RR
Sbjct: 68 WMGLSRR 74
>pdb|1WMY|A Chain A, Crystal Structure Of C-Type Lectin Cel-I From Cucumaria
Echinata
pdb|1WMY|B Chain B, Crystal Structure Of C-Type Lectin Cel-I From Cucumaria
Echinata
pdb|1WMZ|A Chain A, Crystal Structure Of C-Type Lectin Cel-I Complexed With N-
Acetyl-D-Galactosamine
pdb|1WMZ|B Chain B, Crystal Structure Of C-Type Lectin Cel-I Complexed With N-
Acetyl-D-Galactosamine
pdb|1WMZ|C Chain C, Crystal Structure Of C-Type Lectin Cel-I Complexed With N-
Acetyl-D-Galactosamine
pdb|1WMZ|D Chain D, Crystal Structure Of C-Type Lectin Cel-I Complexed With N-
Acetyl-D-Galactosamine
Length = 140
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 19/115 (16%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS-------LDSDLANVNDADEHGFIMYQ 80
+CP W D CYRF + L T +A C S + SDL +V+ A E ++
Sbjct: 2 QCPTDWEAEGDHCYRFFNT-LTTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYVFN- 59
Query: 81 LFWQ--DPQRRKWYFG---GTQQSPNLWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
+W+ D Q + + G + +W + KW G P+ W N +
Sbjct: 60 -YWRGIDSQAGQLWIGLYDKYNEGDFIWTDGSKVGYTKWAGG----QPDNWNNAE 109
>pdb|1YXJ|A Chain A, Crystal Structure Of Human Lectin-like Oxidized
Low-density Lipoprotein Receptor 1 (lox-1) At Low Ph
pdb|1YXJ|B Chain B, Crystal Structure Of Human Lectin-like Oxidized
Low-density Lipoprotein Receptor 1 (lox-1) At Low Ph
Length = 130
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------F 82
CPQ W+ + ++CY F + C SLD+ L +N + FI + F
Sbjct: 3 CPQDWIWHGENCYLFSSGSFNWEKSQE-KCLSLDAKLLKINSTADLDFIQQAISYSSFPF 61
Query: 83 WQDPQRR 89
W RR
Sbjct: 62 WXGLSRR 68
>pdb|2OX9|A Chain A, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|B Chain B, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|C Chain C, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|D Chain D, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain
Length = 140
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP HW + D CY F + DAKL C+ S L +N +E +I
Sbjct: 5 CPPHWKNFTDKCYYFSLEK-EIFEDAKLFCEDKSSHLVFINSREEQQWI 52
>pdb|2XR6|A Chain A, Crystal Structure Of The Complex Of The Carbohydrate
Recognition Domain Of Human Dc-Sign With Pseudo
Trimannoside Mimic
Length = 170
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 23 DELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
+ L CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 16 ERLSHPCPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 72
>pdb|2AFP|A Chain A, The Solution Structure Of Type Ii Antifreeze Protein
Reveals A New Member Of The Lectin Family
Length = 129
Score = 32.7 bits (73), Expect = 0.45, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP W D C + + + T A+ NC L LA+++ +EH FI
Sbjct: 7 CPAGWQPLGDRCIYYETTAM-TWALAETNCMKLGGHLASIHSQEEHSFI 54
>pdb|2XR5|A Chain A, Crystal Structure Of The Complex Of The Carbohydrate
Recognition Domain Of Human Dc-Sign With Pseudo
Dimannoside Mimic
Length = 166
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 18 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 68
>pdb|2B6B|D Chain D, Cryo Em Structure Of Dengue Complexed With Crd Of
Dc-Sign
Length = 175
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 27 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 77
>pdb|1SL4|A Chain A, Crystal Structure Of Dc-Sign Carbohydrate Recognition
Domain Complexed With Man4
pdb|2IT6|A Chain A, Crystal Structure Of Dcsign-Crd With Man2
Length = 155
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 7 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 57
>pdb|1K9I|A Chain A, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|B Chain B, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|C Chain C, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|D Chain D, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|E Chain E, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|F Chain F, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|G Chain G, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|H Chain H, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|I Chain I, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|J Chain J, Complex Of Dc-Sign And Glcnac2man3
Length = 156
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 8 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 58
>pdb|1SL5|A Chain A, Crystal Structure Of Dc-Sign Carbohydrate Recognition
Domain Complexed With Lnfp Iii (Dextra L504).
pdb|2IT5|A Chain A, Crystal Structure Of Dcsign-crd With Man6
Length = 139
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 7 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 57
>pdb|2H2R|A Chain A, Crystal Structure Of The Human Cd23 Lectin Domain, Apo
Form
pdb|2H2R|B Chain B, Crystal Structure Of The Human Cd23 Lectin Domain, Apo
Form
pdb|2H2T|B Chain B, Cd23 Lectin Domain, Calcium 2+-Bound
Length = 175
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP+ W+ ++ CY F K K A+ C ++ L +++ +E F+
Sbjct: 17 CPEKWINFQRKCYYFGKG-TKQWVHARYACDDMEGQLVSIHSPEEQDFL 64
>pdb|3BX4|B Chain B, Crystal Structure Of The Snake Venom Toxin Aggretin
pdb|3BX4|D Chain D, Crystal Structure Of The Snake Venom Toxin Aggretin
Length = 146
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 9 FIFVSFHS-VFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDL 65
FIFVSF V ++ CP W Y CY+ P K DA+ CK S L
Sbjct: 4 FIFVSFGLLVVFLSLSGTGADCPSGWSSYEGHCYKPFNEP-KNWADAERFCKLQPKHSHL 62
Query: 66 ANVNDADEHGFIM 78
+ A+E F++
Sbjct: 63 VSFQSAEEADFVV 75
>pdb|1SL6|A Chain A, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|B Chain B, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|C Chain C, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|D Chain D, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|E Chain E, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|F Chain F, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1XAR|A Chain A, Crystal Structure Of A Fragment Of Dc-Signr (Containing
The Carbohydrate Recognition Domain And Two Repeats Of
The Neck).
pdb|1XAR|B Chain B, Crystal Structure Of A Fragment Of Dc-Signr (Containing
The Carbohydrate Recognition Domain And Two Repeats Of
The Neck)
Length = 184
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 21 TIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
+ L CP+ W ++ +CY F+ + + +D+ C+ + + L + A+E F+ Q
Sbjct: 45 AFERLCRHCPKDWTFFQGNCY-FMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQ 103
>pdb|1XPH|A Chain A, Structure Of Dc-Signr And A Portion Of Repeat Domain 8
Length = 150
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 21 TIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
+ L CP+ W ++ +CY F+ + + +D+ C+ + + L + A+E F+ Q
Sbjct: 11 AFERLCRHCPKDWTFFQGNCY-FMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQ 69
>pdb|2LS8|A Chain A, Solution Structure Of Human C-Type Lectin Domain Family
4 Member D
Length = 156
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
+ CP W ++ +CY F + KT +++ NC + + L ++ E FI+ L
Sbjct: 1 MVCPIDWRAFQSNCY-FPLTDNKTWAESERNCSGMGAHLMTISTEAEQNFIIQFL----- 54
Query: 87 QRRKWYFGG 95
RR YF G
Sbjct: 55 DRRLSYFLG 63
>pdb|1MPU|A Chain A, Crystal Structure Of The Free Human Nkg2d Immunoreceptor
Length = 138
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGF--IMYQLFWQD- 85
CP++W+ Y+++CY+F K +++ +C S ++ L V ++ ++ W
Sbjct: 21 CPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGL 79
Query: 86 ---PQRRKWYF-GGTQQSPNL 102
P W + G+ SPNL
Sbjct: 80 VHIPTNGSWQWEDGSILSPNL 100
>pdb|1HYR|B Chain B, Crystal Structure Of Human Mica In Complex With Natural
Killer Cell Receptor Nkg2d
pdb|1HYR|A Chain A, Crystal Structure Of Human Mica In Complex With Natural
Killer Cell Receptor Nkg2d
Length = 137
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGF--IMYQLFWQD- 85
CP++W+ Y+++CY+F K +++ +C S ++ L V ++ ++ W
Sbjct: 20 CPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGL 78
Query: 86 ---PQRRKWYF-GGTQQSPNL 102
P W + G+ SPNL
Sbjct: 79 VHIPTNGSWQWEDGSILSPNL 99
>pdb|1K9J|A Chain A, Complex Of Dc-signr And Glcnac2man3
pdb|1K9J|B Chain B, Complex Of Dc-signr And Glcnac2man3
Length = 139
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 22 IDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
+ L CP+ W ++ +CY F+ + + +D+ C+ + + L + A+E F+ Q
Sbjct: 1 AERLCRHCPKDWTFFQGNCY-FMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQ 58
>pdb|3UBU|A Chain A, Crystal Structure Of Agkisacucetin, A Gpib-Binding
Snaclec (Snake C- Type Lectin) That Inhibits Platelet
Length = 131
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQLFW 83
++ C W Y SCYR K LKT +DA+ C + L ++ A E F+ QL
Sbjct: 1 DVDCLPGWSAYDQSCYRVFKL-LKTWDDAEKFCTERPKGGHLVSIESAGERDFVA-QLVS 58
Query: 84 QDPQRRKWYFGGTQQS 99
++ Q + G QS
Sbjct: 59 ENKQTDNVWLGLKIQS 74
>pdb|1BJ3|A Chain A, Crystal Structure Of Coagulation Factor Ix-Binding Protein
(Ix-Bp) From Venom Of Habu Snake With A Heterodimer Of
C-Type Lectin Domains
pdb|1J34|A Chain A, Crystal Structure Of Mg(Ii)-And Ca(Ii)-Bound Gla Domain Of
Factor Ix Complexed With Binding Protein
pdb|1J35|A Chain A, Crystal Structure Of Ca(Ii)-Bound Gla Domain Of Factor Ix
Complexed With Binding Protein
pdb|1X2T|A Chain A, Crystal Structure Of Habu Ix-Bp At Ph 6.5
pdb|1X2T|C Chain C, Crystal Structure Of Habu Ix-Bp At Ph 6.5
pdb|1X2W|A Chain A, Crystal Structure Of Apo-Habu Ix-Bp At Ph 4.6
Length = 129
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY+ K KT +DA+ C ++ L ++ A E F+ QL ++
Sbjct: 2 CPSGWSSYEGHCYKPFKL-YKTWDDAERFCTEQAKGGHLVSIESAGEADFVA-QLVTENI 59
Query: 87 QRRKWYF-------GGTQQSPNLWVNEDDPQRRKW 114
Q K Y G +Q + W + W
Sbjct: 60 QNTKSYVWIGLRVQGKEKQCSSEWSDGSSVSYENW 94
>pdb|2VUV|A Chain A, Crystal Structure Of Codakine At 1.3a Resolution
pdb|2VUZ|A Chain A, Crystal Structure Of Codakine In Complex With
Biantennary Nonasaccharide At 1.7a Resolution
Length = 129
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMY 79
CP W Q+ D CY + +S + A+ +C++L LA + A E+ +++
Sbjct: 2 CPDGWTQFLDLCYIY-QSAKASWASAQSSCQALGGILAEPDTACENEVLIH 51
>pdb|1KCG|A Chain A, Nkg2d In Complex With Ulbp3
pdb|1KCG|B Chain B, Nkg2d In Complex With Ulbp3
Length = 124
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGF--IMYQLFWQD- 85
CP++W+ Y+++CY+F K +++ +C S ++ L V ++ ++ W
Sbjct: 7 CPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGL 65
Query: 86 ---PQRRKWYF-GGTQQSPNL 102
P W + G+ SPNL
Sbjct: 66 VHIPTNGSWQWEDGSILSPNL 86
>pdb|2QK9|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 18-Mer RnaDNA HYBRID
pdb|2QKK|A Chain A, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|B Chain B, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|E Chain E, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|F Chain F, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|I Chain I, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|J Chain J, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|M Chain M, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|N Chain N, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|R Chain R, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|S Chain S, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
pdb|2QKK|W Chain W, Human Rnase H Catalytic Domain Mutant D210n In Complex
With 14-Mer RnaDNA HYBRID
Length = 154
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 312 TNGSQISFMWIPSHSNIALNDKADQLAK 339
T G I +M +P HS N++AD+LA+
Sbjct: 119 TQGMDIQWMHVPGHSGFIGNEEADRLAR 146
>pdb|3UBU|B Chain B, Crystal Structure Of Agkisacucetin, A Gpib-Binding Snaclec
(Snake C- Type Lectin) That Inhibits Platelet
Length = 126
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 26/119 (21%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQLF---- 82
CP W Y CY VK KT +DA+ C + L +V+ +E F+++ +
Sbjct: 4 CPLRWSAYEGHCYLVVKEK-KTWDDAEKFCTEQRKGGHLVSVHSREEADFLVHLAYPILD 62
Query: 83 -----------WQDPQRRKWYFGGTQQSPNLWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
W D +R+W GT+ W D G N W+N D
Sbjct: 63 LSLIWMGLSNMWNDC-KREWS-DGTKLDFKSWAKTSD------CLIGKTDGDNQWLNMD 113
>pdb|1UMR|C Chain C, Crystal Structure Of The Platelet Activator Convulxin, A
Disulfide Linked A4b4 Cyclic Tetramer From The Venom Of
Crotalus Durissus Terrificus
pdb|1UMR|D Chain D, Crystal Structure Of The Platelet Activator Convulxin, A
Disulfide Linked A4b4 Cyclic Tetramer From The Venom Of
Crotalus Durissus Terrificus
Length = 125
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIM 78
CP HW Y CY+ K + T DA+ C + S L + + +E F++
Sbjct: 4 CPSHWSSYDRYCYKVFKQEM-TWADAEKFCTQQHTGSHLVSFHSTEEVDFVV 54
>pdb|1UOS|B Chain B, The Crystal Structure Of The Snake Venom Toxin Convulxin
pdb|1UOS|D Chain D, The Crystal Structure Of The Snake Venom Toxin Convulxin
Length = 126
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIM 78
CP HW Y CY+ K + T DA+ C + S L + + +E F++
Sbjct: 5 CPSHWSSYDRYCYKVFKQEM-TWADAEKFCTQQHTGSHLVSFHSTEEVDFVV 55
>pdb|1QDD|A Chain A, Crystal Structure Of Human Lithostathine To 1.3 A
Resolution
Length = 144
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 22 IDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIMYQ 80
+ + + CP+ YR CY F +T DA L C++++S +L +V E F+
Sbjct: 7 LPQARISCPEGTNAYRSYCYYF-NEDRETWVDADLYCQNMNSGNLVSVLTQAEGAFVASL 65
Query: 81 LFWQDPQRRKWYFGGTQQSPNLWVNEDDPQR-RKWYF 116
+ GT N+W+ DP++ R W++
Sbjct: 66 I----------KESGTDDF-NVWIGLHDPKKNRAWHW 91
>pdb|1LIT|A Chain A, Human Lithostathine
Length = 144
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 22 IDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIMYQ 80
+ + + CP+ YR CY F +T DA L C++++S +L +V E F+
Sbjct: 7 LPQARISCPEGTNAYRSYCYYF-NEDRETWVDADLYCQNMNSGNLVSVLTQAEGAFVASL 65
Query: 81 LFWQDPQRRKWYFGGTQQSPNLWVNEDDPQR-RKWYF 116
+ GT N+W+ DP++ R+W++
Sbjct: 66 I----------KESGTDDF-NVWIGLHDPKKNRRWHW 91
>pdb|3ESW|A Chain A, Complex Of Yeast Pngase With Glcnac2-Iac
Length = 355
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 174 EPLLFICEASIQKLHYLLNDDRTYQ 198
E L F+C+ ++L Y LNDD YQ
Sbjct: 301 EDLKFLCQFITKRLRYSLNDDEIYQ 325
>pdb|1X3W|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex
Length = 335
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 174 EPLLFICEASIQKLHYLLNDDRTYQ 198
E L F+C+ ++L Y LNDD YQ
Sbjct: 280 EDLKFLCQFITKRLRYSLNDDEIYQ 304
>pdb|1TDQ|B Chain B, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 130
Score = 28.5 bits (62), Expect = 9.8, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
+C + W +++ CYR +T DA+ C+ S L+++ +E F+
Sbjct: 6 QCEEGWTKFQGHCYRHFPDR-ETWVDAERRCREQQSHLSSIVTPEEQEFV 54
>pdb|1X3Z|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex
Length = 335
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 174 EPLLFICEASIQKLHYLLNDDRTYQ 198
E L F+C+ ++L Y LNDD YQ
Sbjct: 280 EDLKFLCQFITKRLRYSLNDDEIYQ 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,388,698
Number of Sequences: 62578
Number of extensions: 615826
Number of successful extensions: 1655
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1636
Number of HSP's gapped (non-prelim): 62
length of query: 483
length of database: 14,973,337
effective HSP length: 103
effective length of query: 380
effective length of database: 8,527,803
effective search space: 3240565140
effective search space used: 3240565140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)