RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14885
(483 letters)
>2bpd_A Dectin-1; receptor, beta-glucan, fungal recognition, C-type
lectin-like domain, CTLD, carbohydrate; 1.5A {Mus
musculus} PDB: 2bph_A 2bpe_A 2cl8_A*
Length = 142
Score = 69.4 bits (170), Expect = 2e-14
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C +W+ + SCY F S + +K +C L + L ++++ E FI Q +
Sbjct: 17 CLPNWIMHGKSCYLFSFSG-NSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQT--SSHRI 73
Query: 89 RKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
++ G ++ W + + P + +
Sbjct: 74 NAFWIGLSRNQSEGPWFWEDGSAFFPNSFQVRNAV--PQESLLHN 116
>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type
lectin-like domain, membrane, immune; 1.64A {Homo
sapiens}
Length = 132
Score = 67.4 bits (165), Expect = 7e-14
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 17/111 (15%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP +W+Q R+SCY + + ++ NC S L + +E FI L
Sbjct: 4 CPNNWIQNRESCYYVSEIW-SIWHTSQENCLKEGSTLLQIESKEEMDFITGSLRKIKGSY 62
Query: 89 RKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQSPNLWVNEDGTNLNE 136
W G +Q + LW + G+ SP L E + N+
Sbjct: 63 DYW-VGLSQDGHSGRWLWQD------------GSSPSPGLLPAERSQSANQ 100
>2xr6_A CD209 antigen; sugar binding protein, carbohydrate binding,
mannose; HET: MAN 07B; 1.35A {Homo sapiens} PDB: 1sl4_A*
2it6_A* 1k9i_A* 2xr5_A* 1sl5_A* 2it5_A* 1xph_A 1k9j_A*
Length = 170
Score = 66.0 bits (161), Expect = 5e-13
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W ++ +CY S + +D+ CK + + L + A+E F+ Q R
Sbjct: 22 CPWEWTFFQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSS--RSNR 78
Query: 89 RKWYFGGT-QQSPNLWVNED-----DPQRRKWYFGGTQQSPNLWVNED 130
W G + W D ++ W G PN ED
Sbjct: 79 FTW-MGLSDLNQEGTWQWVDGSPLLPSFKQYWNRG----EPNNVGEED 121
>1ypq_A Oxidised low density lipoprotein (lectin-like) receptor 1; oxidized
low density lipoprotein receptor, LOX-1, CTLD, C- type
lectin like domain; 1.40A {Homo sapiens} SCOP: d.169.1.1
PDB: 1ypu_A 1yxk_A 3vlg_A 1ypo_A 1yxj_A
Length = 135
Score = 64.8 bits (158), Expect = 7e-13
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CPQ W+ + ++CY F ++ C SLD+ L +N + FI +
Sbjct: 9 CPQDWIWHGENCYLFSSGS-FNWEKSQEKCLSLDAKLLKINSTADLDFIQQAI---SYSS 64
Query: 89 RKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
++ G ++++P+ LW + + G + +
Sbjct: 65 FPFWMGLSRRNPSYPWLWEDGSPLMPHLFRVRGAV--SQTYPSGT 107
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 64.9 bits (158), Expect = 1e-12
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W ++ +CY S + +D+ CK + + L + A+E F+ Q
Sbjct: 27 CPWEWTFFQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAEEQNFLQLQS---SRSN 82
Query: 89 RKWYFGGT-QQSPNLWVNED-----DPQRRKWYFGGTQQSPNLWVNED 130
R + G + W D ++ W G PN ED
Sbjct: 83 RFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRG----EPNNVGEED 126
>2vuv_A Codakine; sugar-binding protein, C-type, lectin, mannose,
invertebrate; HET: CIT; 1.3A {Codakia orbicularis} PDB:
2vuz_A*
Length = 129
Score = 63.5 bits (155), Expect = 2e-12
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W Q+ D CY + + + A+ +C++L LA + A E+ +++
Sbjct: 2 CPDGWTQFLDLCYIYQSAK-ASWASAQSSCQALGGILAEPDTACENEVLIHMCKENGDAG 60
Query: 89 RKWYFGGTQQSPNLWVNEDD 108
+ G Q+ W
Sbjct: 61 SFGPWLGGQKVGGAWQWSSS 80
>1sl6_A C-type lectin DC-signr; sugar binding protein; HET: GAL NDG FUC;
2.25A {Homo sapiens} SCOP: d.169.1.1 PDB: 1xar_A
Length = 184
Score = 64.5 bits (157), Expect = 2e-12
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
Query: 19 SQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM 78
+ L CP+ W ++ +CY S + +D+ C+ + + L + A+E F+
Sbjct: 43 KTAFERLCRHCPKDWTFFQGNCYFMSNSQ-RNWHDSVTACQEVRAQLVVIKTAEEQNFLQ 101
Query: 79 YQLFWQDPQRRKWYFGGT-QQSPNLWVNED-----DPQRRKWYFGGTQQSPNLWVNED 130
Q R W G + W D +R W G PN NED
Sbjct: 102 LQT--SRSNRFSW-MGLSDLNQEGTWQWVDGSPLSPSFQRYWNSG----EPNNSGNED 152
>2c6u_A CLEC1B protein; lectin, rhodocytin, aggretin, C-type lectin-like,
platelets, thrombosis; 1.6A {Homo sapiens}
Length = 122
Score = 62.8 bits (153), Expect = 3e-12
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 18/101 (17%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL---FW-- 83
C +W Y DSCY F + T ++K C +++ L +++ + +I + W
Sbjct: 3 CDTNWRYYGDSCYGFFRHN-LTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVG 61
Query: 84 --QDPQRRKWYFGGTQQSPNLWVNEDDPQRRKWYFGGTQQS 122
+ W W + + F +
Sbjct: 62 LSRQKSNEVW----------KWEDGSVISENMFEFLEDGKG 92
>2ls8_A C-type lectin domain family 4 member D; structural genomics, NEW
YORK structural genomics research consortium, nysgrc,
PSI-biology, immune system; NMR {Homo sapiens}
Length = 156
Score = 63.6 bits (155), Expect = 3e-12
Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W ++ +CY + KT +++ NC + + L ++ E FI+ L +R
Sbjct: 3 CPIDWRAFQSNCYFPLTDN-KTWAESERNCSGMGAHLMTISTEAEQNFIIQFL----DRR 57
Query: 89 RKWYFGGT-QQSPNLWVNED----DPQRRKWYFGGTQQSPNLWVNED 130
++ G + + W D +P+R W+ P+ E+
Sbjct: 58 LSYFLGLRDENAKGQWRWVDQTPFNPRRVFWHKN----EPDNSQGEN 100
>2zib_A Type II antifreeze protein; thermal hysteresis, lectin; 1.34A
{Brachyopsis rostratus}
Length = 133
Score = 62.4 bits (152), Expect = 4e-12
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 20/110 (18%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI---MYQLFW 83
L CP W + C+ + T + A+ NC + LA+++ +E +I + + W
Sbjct: 8 LVCPAGWTLHGQRCFYSEATA-MTWDLAEANCVNKGGHLASIHSLEEQLYIKDIVAGIVW 66
Query: 84 QDPQRRKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
GG+ W + R W PN +++
Sbjct: 67 ---------IGGSACKVAGAWSWTDGTPVDYRTWCPT----KPNDILSDC 103
>1tdq_B Aggrecan core protein; extracellular matrix, lecticans,
tenascins, protein-protein interactions, C-type lectin
domain; 2.60A {Rattus norvegicus} SCOP: d.169.1.1
Length = 130
Score = 62.0 bits (151), Expect = 6e-12
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI---MYQLFW 83
+C + W +++ CYR +T DA+ C+ S L+++ +E F+ W
Sbjct: 6 QCEEGWTKFQGHCYRHFPDR-ETWVDAERRCREQQSHLSSIVTPEEQEFVNKNAQDYQW 63
>2py2_A Antifreeze protein type II; type II antifreeze protein; 1.70A
{Clupea harengus}
Length = 136
Score = 61.6 bits (150), Expect = 8e-12
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 11/105 (10%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W + C+ F DA+ +C ++LA+++ +E F+
Sbjct: 4 CPTDWKMFNGRCFLFNPLQ-LHWADAQESCMKEGANLASIHSLEESTFVKELT---SADL 59
Query: 89 RKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
+ GGT + W++ W P+ + E
Sbjct: 60 IPSWIGGTDCQVSTRWFWMDSTSMDYADWCAA----QPDTTLTEC 100
>3bdw_A Natural killer cells antigen CD94; NK cells, receptor,
glycoprotein, lectin, signal-A transmembrane, immune
system receptor; 2.50A {Homo sapiens} SCOP: d.169.1.1
PDB: 3cdg_J 1b6e_A 3cii_G
Length = 123
Score = 61.3 bits (149), Expect = 8e-12
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM--YQLFW--- 83
C + WV YR +CY KT N+++ C S S L + + DE F+ Q +W
Sbjct: 5 CQEKWVGYRCNCYFISSEQ-KTWNESRHLCASQKSSLLQLQNTDELDFMSSSQQFYWIGL 63
Query: 84 -QDPQRRKWYFGGTQQSPNLWVNEDDPQRRKWYFGGT 119
+ W LW N + + T
Sbjct: 64 SYSEEHTAW----------LWENGSALSQYLFPSFET 90
>1hq8_A NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {Mus musculus}
SCOP: d.169.1.1 PDB: 1jsk_A 1kcg_A*
Length = 123
Score = 60.9 bits (148), Expect = 1e-11
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL--FW-- 83
CP +W+ +R++CY+F KT N ++ +C S +S L + +E F+ W
Sbjct: 5 PCPNNWICHRNNCYQFFNEE-KTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSYHWMG 63
Query: 84 --QDPQRRKWYFGGTQQSPNLWVNEDDPQRRKWYFGG 118
Q P W W + +
Sbjct: 64 LVQIPANGSW----------QWEDGSSLSYNQLTLVE 90
>3ff7_C Killer cell lectin-like receptor subfamily G member 1;
KLRG1-cadherin complex, calcium, cell adhesion, cell
junction, cell membrane; 1.80A {Homo sapiens}
Length = 112
Score = 60.5 bits (147), Expect = 1e-11
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W++Y + CY F K N + C + DS L + D E + L
Sbjct: 1 CPDRWMKYGNHCYYFSVEE-KDWNSSLEFCLARDSHLLVITDNQEMSLLQVFL-----SE 54
Query: 89 RKWYFGGTQQSPNLWVNEDDPQRRKW 114
+ G S W + +
Sbjct: 55 AFSWIGLRNNSGWRWEDGSPLNFSRI 80
>2afp_A Protein (SEA raven type II antifreeze protein); recombinant SEA
raven protein, solution backbone fold, C- type lectin;
NMR {Hemitripterus americanus} SCOP: d.169.1.1
Length = 129
Score = 61.2 bits (149), Expect = 1e-11
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 20/109 (18%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI---MYQLFWQ 84
CP W D C + + T A+ NC L LA+++ +EH FI + W
Sbjct: 6 NCPAGWQPLGDRCIYYETTA-MTWALAETNCMKLGGHLASIHSQEEHSFIQTLNAGVVW- 63
Query: 85 DPQRRKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
GG+ W + R W P+ +
Sbjct: 64 --------IGGSACLQAGAWTWSDGTPMNFRSWCST----KPDDVLAAC 100
>3ff9_A Killer cell lectin-like receptor subfamily G member 1; natural
killer cell receptor KLTG1, glycoprotein, membrane,
phosphoprotein, signal-anchor; 1.80A {Mus musculus} PDB:
3ff8_C
Length = 115
Score = 60.5 bits (147), Expect = 1e-11
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW- 83
CP W + CY F K N + C S L D L +W
Sbjct: 2 CPILWTRNGSHCYYFSMEK-KDWNSSLKFCADKGSHLLTFPDNQGVKLFGEYLGQDFYWI 60
Query: 84 --QDPQRRKWYFGGTQQSPNLWVNEDD 108
++ +W GG S + N
Sbjct: 61 GLRNIDGWRW-EGGPALSLRILTNSLI 86
>3hup_A Early activation antigen CD69; C-type lectin-like domain,
disulfide bond, glycoprotein, LEC membrane,
phosphoprotein, signal-anchor, transmembrane; 1.37A
{Homo sapiens} PDB: 1e87_A 1e8i_A 3cck_A
Length = 130
Score = 60.5 bits (147), Expect = 2e-11
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW 83
C + WV Y+ CY ++ A+ C + LA ++ + F+ W
Sbjct: 15 SCSEDWVGYQRKCYFISTVK-RSWTSAQNACSEHGATLAVIDSEKDMNFLKRYAGREEHW 73
Query: 84 ---QDPQRRKW 91
+ W
Sbjct: 74 VGLKKEPGHPW 84
>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural
killer cell receptor, lectin, C-type lectin, immune
system; 2.27A {Homo sapiens} SCOP: d.169.1.1
Length = 199
Score = 62.3 bits (151), Expect = 2e-11
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 8/96 (8%)
Query: 3 LISSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD 62
+ S FS D C + WV Y+ CY ++ A+ C
Sbjct: 59 IALSVGQYNCPGQYTFSMPSDSHVSSCSEDWVGYQRKCYFISTVK-RSWTSAQNACSEHG 117
Query: 63 SDLANVNDADEHGFIMYQL----FW---QDPQRRKW 91
+ LA ++ + F+ W + W
Sbjct: 118 ATLAVIDSEKDMNFLKRYAGREEHWVGLKKEPGHPW 153
>2ox9_A Collectin placenta 1; C-type lectin, sugar binding protein; HET:
GAL NAG FUC; 1.95A {Mus musculus} PDB: 2ox8_A
Length = 140
Score = 60.9 bits (148), Expect = 2e-11
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 12/108 (11%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP HW + D CY F + DAKL C+ S L +N +E +I ++
Sbjct: 5 CPPHWKNFTDKCYYFSLEK-EIFEDAKLFCEDKSSHLVFINSREEQQWIKKHTVGRESH- 62
Query: 89 RKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQSPNLWVNEDGTN 133
W G T W++ + W G P+ W + G
Sbjct: 63 --W-IGLTDSEQESEWKWLDGSPVDYKNWKAG----QPDNWGSGHGPG 103
>1mpu_A NKG2-D type II integral membrane protein; C-type lectin-like
domain, immune system; 2.50A {Homo sapiens} SCOP:
d.169.1.1 PDB: 1hyr_B
Length = 138
Score = 60.6 bits (147), Expect = 2e-11
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 17/99 (17%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL--FW-- 83
CP++W+ Y+++CY+F K +++ +C S ++ L V ++ + W
Sbjct: 20 PCPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMG 78
Query: 84 --QDPQRRKWYFGGTQQSPNLWVNEDDPQRRKWYFGGTQ 120
P W W + Q
Sbjct: 79 LVHIPTNGSW----------QWEDGSILSPNLLTIIEMQ 107
>3g8k_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.00A {Mus musculus} PDB:
1qo3_C 3cad_A
Length = 130
Score = 60.5 bits (147), Expect = 2e-11
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW 83
++W Y CY FV KT + K C+ L +++ DE F+ + +W
Sbjct: 7 FEKYWFCYGIKCYYFVMDR-KTWSGCKQTCQISSLSLLKIDNEDELKFLKLLVPSDSYW 64
>3bdw_B NKG2-A/NKG2-B type II integral membrane protein; NK cells,
receptor, glycoprotein, lectin, signal-A transmembrane,
immune system receptor; 2.50A {Homo sapiens} PDB:
3cdg_K 3cii_H
Length = 120
Score = 59.7 bits (145), Expect = 3e-11
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL--FW 83
CP+ W+ Y +SCY K +T ++ L C S +S L ++++ +E F+ W
Sbjct: 6 HCPEEWITYSNSCYYIGKER-RTWEESLLACTSKNSSLLSIDNEEEMKFLSIISPSSW 62
>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A
{Homo sapiens}
Length = 118
Score = 59.7 bits (145), Expect = 3e-11
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW 83
CP+ W Y+ C+ S + N+++ CK S LA VN ++ F+ ++
Sbjct: 2 CPKDWEFYQARCFFLSTSE-SSWNESRDFCKGKGSTLAIVNTPEKLKFLQDITDAEKYF 59
>3m9z_A Killer cell lectin-like receptor subfamily B MEMB; C-type
lectin-like domain, domain swapping, disulfide bond,
transmembrane protein; 1.70A {Mus musculus} PDB: 3t3a_A
Length = 139
Score = 60.2 bits (146), Expect = 3e-11
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
L CPQ W+ +RD C+ + T + ++C + L + D +E F++ +
Sbjct: 4 LECPQDWLSHRDKCFHVSQVS-NTWEEGLVDCDGKGATLMLIQDQEELRFLLDSI---KE 59
Query: 87 QRRKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQS 122
+ ++ G P+ W+N G ++
Sbjct: 60 KYNSFWIGLRYTLPDMNWKWINGSTLNSDVLKITGDTEN 98
>1qdd_A Lithostathine; pancreatic stone inhibitor, metal binding protein;
HET: SIA NDG GAL; 1.30A {Homo sapiens} SCOP: d.169.1.1
PDB: 1lit_A
Length = 144
Score = 60.1 bits (146), Expect = 4e-11
Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIMYQLFWQDPQ 87
CP+ YR CY F + +T DA L C++++S +L +V E F+ +
Sbjct: 14 CPEGTNAYRSYCYYFNEDR-ETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTD 72
Query: 88 RRKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
+ G N W + + W G +P+
Sbjct: 73 DFNVWIGLHDPKKNRAWHWSSGSLVSYKSWGIG----APSSVNPGY 114
>3rs1_A C-type lectin domain family 2 member I; C-type lectin-like,
ligand of NK receptor, natural killer CE receptors,
surface of activated T lymphocytes; 1.94A {Mus
musculus}
Length = 122
Score = 59.3 bits (144), Expect = 4e-11
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW 83
C ++W + C+ F P + A+ C + ++ LA ++ +E F+ W
Sbjct: 8 CSKNWTGVGNKCFYFSGYP-RNWTFAQAFCMAQEAQLARFDNEEELIFLKRFKGDFDSW 65
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.7 bits (157), Expect = 4e-11
Identities = 75/506 (14%), Positives = 148/506 (29%), Gaps = 184/506 (36%)
Query: 3 LISSCLFIFVS-----FHSVFSQTIDEL----ELRCPQH-WVQYRDSCYRFVKSPLKTRN 52
L+ + F S F+ + + + E P ++ +V +
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG----YV-----SSL 71
Query: 53 DAKLNCKSLDSDLANVNDADEHGF--------IMYQLFWQDP----QRRKW---YFGG-- 95
D L E+ + + +L ++ + ++ Y
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 96 ------TQQSPNLWVNEDDPQRRKWY--FGGTQQSPNLWVNEDGTNLNELDAAFLPEPAD 147
++S + + FGG Q + + + E L +L
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-QGNTDDYFEE----LRDL---------- 176
Query: 148 NVQRDYLAYSFSQSLKRWGFERVTGMEPLL--FICEASIQKLHYLLND----DRTYQYGM 201
Y Y L+ I ++ + L L+ ++ + G+
Sbjct: 177 -----YQTY-----------------HVLVGDLIKFSA-ETLSELIRTTLDAEKVFTQGL 213
Query: 202 DI----ENPDKIPRGPYFIKQPTDVVFDLSKRNSNTGFA-FII-------NNENFQYRLP 249
+I ENP P Y + P + L A +++ + L
Sbjct: 214 NILEWLENPSNTPDKDYLLSIP--ISCPL---IGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 250 ----HEASIFTAEAIAI------FYCIKKISDMKIKKAI--IFSDNKSVLNGIDNI---- 293
H + TA AIA F+ ++KAI +F I
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVS-------VRKAITVLFF-----------IGVRC 310
Query: 294 QQ---RNNIIQLIKQEYYFASTNGSQI-SFMWIPSHSNIALND-KADQLAK--NSINSKL 346
+ ++ I ++ + N + S M +++++ +Q+ N NS L
Sbjct: 311 YEAYPNTSLPPSILED---SLENNEGVPSPM-------LSISNLTQEQVQDYVNKTNSHL 360
Query: 347 -LDFYIQDDLKNHLRKNIV-----KLYNDQWTNIQNNKLRTIKDNTTLWKT----SLRKI 396
++ L N + +V LY N LR K + L ++ S RK+
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYG------LNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 397 RNEEILLTR-LRIG---HTRITHSYL 418
+ R L + H+ L
Sbjct: 415 K----FSNRFLPVASPFHS----HLL 432
Score = 53.5 bits (128), Expect = 1e-07
Identities = 65/426 (15%), Positives = 129/426 (30%), Gaps = 142/426 (33%)
Query: 99 SPNLWVNEDDPQRRKWYFGGTQQSP--NLWVNEDGTNLNELDAAFLPEPADNVQRDYLAY 156
+ Q ++ F P +++ T EL FL + V+ +
Sbjct: 23 PTASFFIAS--QLQE-QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG- 78
Query: 157 SFSQSLKR--WGFER--VTGME------PLLFICEASIQKLHYLLNDDRTYQYGMDIENP 206
F Q L FE + G + LL + ++ K L+ + Y I
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI---KNY-ITARIMAK 134
Query: 207 DKIPRGPYFIKQPTDVVFDLSKRNSNTGFAFII-------NNEN-FQ--------YRLPH 250
K+ +F R G A ++ N ++ F+ Y +
Sbjct: 135 RPFD------KKSNSALF----RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 251 EASIFTAEAIAIFYCIKKISDMKIKKAIIFSDNKSVLNGIDNIQQRNNIIQLIKQ----- 305
I + + ++ + +F+ G++ I++ ++
Sbjct: 185 GDLIKFSAET-----LSELIRTTLDAEKVFTQ------GLN-------ILEWLENPSNTP 226
Query: 306 -EYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSINSKLLDFYIQDDLKNHLR---- 360
+ Y S IS P I + QLA + +KLL + +L+++L+
Sbjct: 227 DKDYLLS---IPISC---PL---IGVI----QLAHYVVTAKLLG-FTPGELRSYLKGATG 272
Query: 361 --KNIVK----LYNDQWTNIQNNKLRTIK-------------DNTTLWKTSLRK-IRNEE 400
+ +V D W + + + I NT+L + L + N E
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 401 ILLTRLRIGHTRITHSYLFTKTPHPICTC-GFPLTV--KHIFECNKYKKFREKLSLPS-- 455
P P+ + ++ + N + LP+
Sbjct: 333 --------------------GVPSPMLSISNLTQEQVQDYVNKTNSH--------LPAGK 364
Query: 456 -IEIAL 460
+EI+L
Sbjct: 365 QVEISL 370
Score = 46.6 bits (110), Expect = 2e-05
Identities = 48/271 (17%), Positives = 90/271 (33%), Gaps = 60/271 (22%)
Query: 63 SDLA-NV-NDADEH-----GFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDDPQRRKWY 115
S A +V N AD H GF + + +P +FGG ++ + N
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG-EKGKRIRENYSAMIFETIV 1697
Query: 116 FGGTQQSPNLW-VNEDGTNLN-ELDAAFLPEPADNVQRDYLAYSFS--QSLKRWGFER-- 169
G + +NE T+ + L Q + + LK G
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-FTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 170 ----------------VTGMEPLLFICEASIQKLHYLLNDDR--TYQ------------Y 199
+ + + E+ ++ + Y R T Q Y
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSI----ESLVEVVFY-----RGMTMQVAVPRDELGRSNY 1807
Query: 200 GMDIENPDKIPRGPYFIKQPTDVVFDLSKRNSNTGFAFIIN-N-ENFQYRLP-HEASIFT 256
GM NP ++ F ++ V + + + I+N N EN QY ++ T
Sbjct: 1808 GMIAINPGRV--AASFSQEALQYVVERVGKRTG-WLVEIVNYNVENQQYVAAGDLRALDT 1864
Query: 257 AEAIAIFYCIKKISDMKIKKAIIFSDNKSVL 287
+ F ++KI ++++K++ + + L
Sbjct: 1865 VTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 31.9 bits (72), Expect = 0.65
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 17/77 (22%)
Query: 404 TR-LRIGHTRITHSYLFTKTPHPICTCGFPLTVKHIFECNKYKKFREKLSLPSIEIALSD 462
TR L + H + H L P ++F + L P+ A +D
Sbjct: 6 TRPLTLSHGSLEHVLL---VPTAS----------FFIASQLQEQFNKILPEPTEGFA-AD 51
Query: 463 NE--NMAEKTIKYMKMI 477
+E AE K++ +
Sbjct: 52 DEPTTPAELVGKFLGYV 68
>1dv8_A Asialoglycoprotein receptor 1; C-type lectin CRD, signaling
protein; 2.30A {Homo sapiens} SCOP: d.169.1.1
Length = 128
Score = 58.9 bits (143), Expect = 7e-11
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW 83
CP +WV++ SCY F +S K DA C+ D+ L V +E F+ + + W
Sbjct: 1 CPVNWVEHERSCYWFSRSG-KAWADADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTW 58
>3c22_A C-type lectin domain family 4 member K; coiled coil,
glycoprotein, membrane, signal-anchor, transmembrane,
immune system, sugar binding protein; 1.50A {Homo
sapiens} PDB: 3p5g_A* 3p5d_A* 3p5f_A* 3p5e_A* 3p5h_A*
3p5i_A* 3p7g_A* 3p7f_A* 3p7h_A* 3bc7_A* 3bbs_A* 3bc6_A*
Length = 156
Score = 59.0 bits (143), Expect = 1e-10
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM----YQLFW 83
Q W ++ + Y F P KT A+ C S +S L +V E F+ ++W
Sbjct: 23 VSQGWKYFKGNFYYFSLIP-KTWYSAEQFCVSRNSHLTSVTSESEQEFLYKTAGGLIYW 80
>2h2t_B Low affinity immunoglobulin epsilon FC receptor ( IGE receptor)
(FC-epsilon-RII)...; C-type lectin, calcium-bound,
lectin domain; 1.30A {Homo sapiens} PDB: 2h2r_A 1t8c_A
1t8d_A
Length = 175
Score = 59.4 bits (144), Expect = 1e-10
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM----YQLFW 83
CP+ W+ ++ CY F K K A+ C ++ L +++ +E F+ + W
Sbjct: 17 CPEKWINFQRKCYYFGKGT-KQWVHARYACDDMEGQLVSIHSPEEQDFLTKRASHTGSW 74
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled
coil, C-type lectin, carbohydrate recognition domain;
2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Length = 182
Score = 59.4 bits (144), Expect = 1e-10
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C + + C+ KT ++A +C S L+ E+ + L
Sbjct: 51 CLKGT-KVHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNE 108
Query: 89 RKWYFGGT-QQSPNLWVNEDD--PQRRKWYFGGTQQSPNLWVNED 130
+ + G + WV+ + W T Q P+ E+
Sbjct: 109 AEIWLGLNDMAAEGTWVDMTGARIAYKNWETEITAQ-PDGGKTEN 152
>1fvu_B Botrocetin beta chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_C
1u0n_C 1u0o_B
Length = 125
Score = 57.8 bits (140), Expect = 2e-10
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CYRF K +DA+ C + L + +E F+
Sbjct: 2 CPPDWSSYEGHCYRFFKEW-MHWDDAEEFCTEQQTGAHLVSFQSKEEADFVRSLTSEMLK 60
Query: 87 QRRKWYFGGTQQSPN---LWVNEDDPQRRKWYFGG 118
W G + W + + +Y
Sbjct: 61 GDVVW-IGLSDVWNKCRFEWTDGMEFDYDDYYLIA 94
>1tn3_A Tetranectin; plasminogen binding, kringle 4, C-type lectin,
carbohydrate recognition domain; 2.00A {Homo sapiens}
SCOP: d.169.1.1 PDB: 1rjh_A 3l9j_C
Length = 137
Score = 57.8 bits (140), Expect = 2e-10
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ 84
L+ C + + C+ KT ++A +C S L+ E+ + L
Sbjct: 2 LQTVCLKGT-KVHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQS 59
Query: 85 DPQRRKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
+ + G + + + + W T Q P+ E+
Sbjct: 60 VGNEAEIWLGLNDMAAEGTWVDMTGARIAYKNWETEITAQ-PDGGKTEN 107
>3ubu_A Agglucetin subunit alpha-1; platelet inhibiting, agkisacucetin,
dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding;
1.91A {Deinagkistrodon acutus}
Length = 131
Score = 57.4 bits (139), Expect = 2e-10
Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 9/99 (9%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFW 83
++ C W Y SCYR K KT +DA+ C L ++ A E F+ +
Sbjct: 1 DVDCLPGWSAYDQSCYRVFKLL-KTWDDAEKFCTERPKGGHLVSIESAGERDFVAQLVSE 59
Query: 84 QDPQRRKWYFGGTQQSPN-----LWVNEDDPQRRKWYFG 117
W G QS W + +
Sbjct: 60 NKQTDNVW-LGLKIQSKGQQCSTEWTDGSSVSYENFSEY 97
>1jwi_A Bitiscetin; domain swapping, C-type lectin, toxin; 2.00A {Bitis
arietans} SCOP: d.169.1.1 PDB: 1uex_A
Length = 131
Score = 57.4 bits (139), Expect = 2e-10
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
C W Y+ CY+ K T DA+ C LA+++ +E F+
Sbjct: 4 CLPDWSSYKGHCYKVFKKV-GTWEDAEKFCVENSGHLASIDSKEEADFV 51
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and
CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Length = 182
Score = 58.3 bits (141), Expect = 3e-10
Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 16/109 (14%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
Q W ++ + Y F P KT A+ C S +S L +V E F+ ++
Sbjct: 49 VSQGWKYFKGNFYYFSLIP-KTWYSAEQFCVSRNSHLTSVTSESEQEFL-----YKTAGG 102
Query: 89 RKWYFGGT-QQSPNLWVNED------DPQRRKWYFGGTQQSPNLWVNED 130
++ G T W D R W G + N NE
Sbjct: 103 LIYWIGLTKAGMEGDWSWVDDTPFNKVQSARFWIPG---EPNNAGNNEH 148
>2e3x_C Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 122
Score = 56.6 bits (137), Expect = 3e-10
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQ 84
L CP W+ Y CY+ K DA+ C S L +++ +E F+ L +
Sbjct: 1 LDCPSGWLSYEQHCYKGFNDL-KNWTDAEKFCTEQKKGSHLVSLHSREEEKFV-VNLISE 58
Query: 85 DPQRRKWYFGGTQQS 99
+ + + G
Sbjct: 59 NLEYPATWIGLGNMW 73
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin,
C-type lectin, alpha-helical coiled coil, carbohydrate
recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP:
d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A*
3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A*
2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A*
1b08_A 3g84_A* ...
Length = 177
Score = 58.2 bits (141), Expect = 3e-10
Identities = 9/84 (10%), Positives = 26/84 (30%), Gaps = 5/84 (5%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD 85
++ + + ++ K +A+L C LA+ A E+ + +
Sbjct: 52 KVELFPNGQSVGEKIFKTAGFV-KPFTEAQLLCTQAGGQLASPRSAAENAALQQLV---V 107
Query: 86 PQRRKWYFGGT-QQSPNLWVNEDD 108
+ + T ++ +
Sbjct: 108 AKNEAAFLSMTDSKTEGKFTYPTG 131
>1egg_A Macrophage mannose receptor; C-type lectin, sugar binding protein;
2.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1egi_A
Length = 147
Score = 57.4 bits (139), Expect = 4e-10
Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 11/111 (9%)
Query: 28 RCPQHWV--QYRDSCYRFVKSPLKTR---NDAKLNCKSLDSDLANVNDADEHGFIMYQLF 82
+CP+ W C++ + +++ C++L DLA++N+ +E I +
Sbjct: 4 KCPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKEEQQTIWRLIT 63
Query: 83 WQDPQRRKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
+ ++ G T SP+ W + W +G + N E
Sbjct: 64 ASGSYHKLFWLGLTYGSPSEGFTWSDGSPVSYENWAYG---EPNNYQNVEY 111
>1jwi_B Platelet aggregation inducer; domain swapping, C-type lectin,
toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB:
1uex_B
Length = 125
Score = 56.7 bits (137), Expect = 4e-10
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFW 83
+ C W Y+ CY+ K KT DA+ CK L L +VN +E FI
Sbjct: 1 DEGCLPDWSSYKGHCYKVFKVE-KTWADAEKFCKELVNGGHLMSVNSREEGEFISKLALE 59
Query: 84 QDPQRRKWYFGGTQQS 99
+ W G +
Sbjct: 60 KMRIVLVW-IGLSHFW 74
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_B
Length = 146
Score = 57.0 bits (138), Expect = 4e-10
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 9 FIFVSFHS-VFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDL 65
FIFVSF V ++ CP W Y CY+ P K DA+ CK S L
Sbjct: 4 FIFVSFGLLVVFLSLSGTGADCPSGWSSYEGHCYKPFNEP-KNWADAERFCKLQPKHSHL 62
Query: 66 ANVNDADEHGFIMYQLFWQDPQRRKW 91
+ A+E F++ + W
Sbjct: 63 VSFQSAEEADFVVKLTRPRLKANLVW 88
>1wmz_A Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type; C-type
lectin, N-acetylgalactosamine, invertebrate, sugar
binding protein; HET: NGA A2G; 1.70A {Cucumaria
echinata} SCOP: d.169.1.1 PDB: 1wmy_A*
Length = 140
Score = 56.7 bits (137), Expect = 4e-10
Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 14/113 (12%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD-------SDLANVNDADEHGFIMYQ 80
+CP W D CYRF + T +A C S SDL +V+ A E ++
Sbjct: 2 QCPTDWEAEGDHCYRFFNTL-TTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYVFNY 60
Query: 81 LFWQDPQRRKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
D Q + + G + +W + KW G Q N ED
Sbjct: 61 WRGIDSQAGQLWIGLYDKYNEGDFIWTDGSKVGYTKWAGG---QPDNWNNAED 110
>2kv3_A Regenerating islet-derived protein 4; GISP, C-type lectin, REG IV,
disulfide bond, glycoPro lectin, secreted, sugar binding
protein; NMR {Homo sapiens}
Length = 131
Score = 56.3 bits (136), Expect = 5e-10
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 26/109 (23%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
C W ++ +CY + + + +DA+L C+S + LA++ E I +
Sbjct: 3 CAPGWFYHKSNCYGYFRKL-RNWSDAELECQSYGNGAHLASILSLKEASTIAEYISGYQR 61
Query: 87 QRRKWYFGGTQQSPNLWVNEDDPQRRKWYFGGTQQSPNLWVNEDGTNLN 135
+ W G D +R++W W+ DG
Sbjct: 62 SQSIW-IGLH----------DPQKRQQW----------QWI--DGAMYL 87
>3ubu_B Agglucetin subunit beta-2; platelet inhibiting, agkisacucetin,
dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding;
1.91A {Deinagkistrodon acutus}
Length = 126
Score = 55.5 bits (134), Expect = 8e-10
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY VK KT +DA+ C + L +V+ +E F+++ +
Sbjct: 4 CPLRWSAYEGHCYLVVKEK-KTWDDAEKFCTEQRKGGHLVSVHSREEADFLVHLAYPILD 62
Query: 87 QRRKWYFGGT-QQSPNLWVNED 107
W G + + D
Sbjct: 63 LSLIW-MGLSNMWNDCKREWSD 83
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 57.6 bits (139), Expect = 9e-10
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW 83
R ++W Y CY F+ + T + K NC+ + + D DE F+ + +W
Sbjct: 79 RGVKYWFCYSTKCYYFIMNK-TTWSGCKANCQHYGVPILKIEDEDELKFLQRHVIPGNYW 137
>1sb2_B Rhodocetin beta subunit; C-type lectin, domain swapping, toxin;
1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB:
3gpr_B
Length = 129
Score = 55.5 bits (134), Expect = 9e-10
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFW 83
+ RCP W + CY+ K KT +A+ C + L ++ A E F+ +
Sbjct: 1 DFRCPTTWSASKLYCYKPFKEK-KTWIEAERFCAKQAENGHLVSIGSAAEADFL-DLVIV 58
Query: 84 QDPQRRKWYF 93
+ ++++
Sbjct: 59 VNFDKQRYRA 68
>1gz2_A Ovocleidin-17, OC-17 ovocleidin; structural protein, CTLD, eggshell
structural protein, phosphoprotein, sugar-binding
protein, glycoprotein; HET: SEP; 1.5A {Gallus gallus}
SCOP: d.169.1.1
Length = 142
Score = 55.6 bits (134), Expect = 1e-09
Identities = 22/110 (20%), Positives = 28/110 (25%), Gaps = 20/110 (18%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDP 86
C WV C F + + A+ C+ S LA V A E + L
Sbjct: 5 CGPGWVPTPGGCLGFFSRE-LSWSRAESFCRRWGPGSHLAAVRSAAELRLLAELLN---- 59
Query: 87 QRRKWYFGGTQQSPNLWVNEDDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 135
R G +W G W DGT
Sbjct: 60 ASRGGDGSGEGADGRVW------------IGLHRPAGSRSWRWSDGTAPR 97
>1umr_C Convulxin beta, CVX beta; lectin, C-type lectin, platelet,
sugar-binding protein, activator, snake venom; 2.40A
{Crotalus durissus terrificus} SCOP: d.169.1.1 PDB:
1uos_B
Length = 125
Score = 55.1 bits (133), Expect = 1e-09
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP 86
CP HW Y CY+ K T DA+ C S L + + +E F++
Sbjct: 4 CPSHWSSYDRYCYKVFKQE-MTWADAEKFCTQQHTGSHLVSFHSTEEVDFVVKMTHQSLK 62
Query: 87 QRRKW 91
W
Sbjct: 63 STFFW 67
>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.50A {Mus musculus}
Length = 190
Score = 56.8 bits (137), Expect = 1e-09
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW 83
++W Y CY FV KT + K C+ L +++ DE F+ + +W
Sbjct: 67 FEKYWFCYGIKCYYFVMDR-KTWSGCKQTCQISSLSLLKIDNEDELKFLKLLVPSDSYW 124
>3gpr_D Rhodocetin subunit delta; disulfide bond, lectin, secreted,
toxin, cell adhesion; 3.20A {Calloselasma rhodostoma}
Length = 124
Score = 54.8 bits (132), Expect = 1e-09
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
CP HW Y CYR KT DA+ C + S LA+++ +E F+
Sbjct: 1 CPLHWSSYNGYCYRVFSEL-KTWEDAESFCYAQHKGSRLASIHSREEEAFVGKLASQTLK 59
Query: 87 QRRKW 91
W
Sbjct: 60 YTSMW 64
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate
binding, lectin, mannose, sugar BIND protein; 1.80A
{Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A
3pak_A
Length = 148
Score = 55.5 bits (134), Expect = 2e-09
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 5/82 (6%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
L + D + + K C ++A +E+ I
Sbjct: 25 LSLQGSMLSVGDKVFSTNGQS-VNFDTIKEMCTRAGGNIAVPRTPEENEAIASIA---KK 80
Query: 87 QRRKWYFGGT-QQSPNLWVNED 107
Y G Q+P + D
Sbjct: 81 YNNYVYLGMIEDQTPGDFHYLD 102
>1oz7_A Echicetin A-chain; platelet aggregation, dimer, toxin; 2.40A {Echis
carinatus} SCOP: d.169.1.1
Length = 131
Score = 54.8 bits (132), Expect = 2e-09
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDP 86
CP W CY K P KT ++A+ C D L ++ E + +
Sbjct: 2 CPPGWSSNGVYCYMLFKEP-KTWDEAEKFCNKQGKDGHLLSIESKKEEILVDIVVSENIG 60
Query: 87 QRRKWYFGGTQQSPN 101
+ K + G +++S
Sbjct: 61 KMYKIWTGLSERSKE 75
>1c3a_B Flavocetin-A: beta subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_B
Length = 125
Score = 54.3 bits (131), Expect = 2e-09
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 26/109 (23%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
CP W Y + CY+ + DA+ C S L + + ++E F+ + F
Sbjct: 4 CPLGWSSYDEHCYQVFQQK-MNWEDAEKFCTQQHKGSHLVSFHSSEEVDFVTSKTFPILK 62
Query: 87 QRRKWYFGGTQQSPNLWVNEDDPQRRKWYFGGTQQSPNLWVNEDGTNLN 135
W G + + W DGT L+
Sbjct: 63 YDFVW-IGLS----------NVWNECTK----------EWS--DGTKLD 88
>1j34_B Coagulation factor IX-binding protein B chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_B 1ixx_B* 1j35_B* 1x2t_B*
1x2w_B 1wt9_B 1iod_B 1y17_B
Length = 123
Score = 54.3 bits (131), Expect = 2e-09
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS--DLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY+ P K DA+ C + L + ++E F++ F
Sbjct: 2 CPSDWSSYEGHCYKPFSEP-KNWADAENFCTQQHAGGHLVSFQSSEEADFVVKLAFQTFG 60
Query: 87 QRRKW 91
W
Sbjct: 61 HSIFW 65
>1oz7_B Echicetin B-chain; platelet aggregation, dimer, toxin; 2.40A {Echis
carinatus} SCOP: d.169.1.1
Length = 123
Score = 54.3 bits (131), Expect = 2e-09
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDP 86
C W Y CY+ K DA+ C D L + ++ E F++ F
Sbjct: 2 CLPDWSVYEGYCYKVFKER-MNWADAEKFCTKQHKDGHLVSFRNSKEVDFVISLAFPMLK 60
Query: 87 QRRKWYFGGT-QQSPNLW 103
W G T W
Sbjct: 61 NDLVW-IGLTDYWRDCNW 77
>1jzn_A Galactose-specific lectin; C-type lectin, protein-disaccharide
complex, sugar binding P; HET: BGC GAL; 2.20A {Crotalus
atrox} SCOP: d.169.1.1 PDB: 1muq_A*
Length = 135
Score = 54.3 bits (131), Expect = 3e-09
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 9/107 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS--DLANVNDADEHGFIMYQLFWQDP 86
CP W+ CY+ KT DA++ C+ LA+ + E I +
Sbjct: 3 CPLDWLPMNGLCYKIFNQL-KTWEDAEMFCRKYKPGCHLASFHRYGESLEIAEYISDYHK 61
Query: 87 QRRKWYFGGTQQSPN---LWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
+ + G + + W + W Q + E
Sbjct: 62 GQENVWIGLRDKKKDFSWEWTDRSCTDYLTWDKN---QPDHYQNKEF 105
>1ukm_B EMS16 B chain, EMS16 subunit B; domain swapping, C-type lectin,
toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP:
d.169.1.1 PDB: 1v7p_B*
Length = 128
Score = 54.0 bits (130), Expect = 3e-09
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
CP W + CY+ + K +A+ C S LA+++ ++E F+
Sbjct: 1 CPLGWSSFDQHCYKVFEPV-KNWTEAEEICMQQHKGSRLASIHSSEEEAFVSKLASKALK 59
Query: 87 QRRKW 91
W
Sbjct: 60 FTSMW 64
>1c3a_A Flavocetin-A: alpha subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_A
Length = 135
Score = 54.0 bits (130), Expect = 3e-09
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFI 77
C W Y CY+ P K DA+ C+ S L ++ + E F+
Sbjct: 4 CIPGWSAYDRYCYQAFSKP-KNWEDAESFCEEGVKTSHLVSIESSGEGDFV 53
>1ukm_A EMS16 A chain, EMS16 subunit A; domain swapping, C-type lectin,
toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP:
d.169.1.1 PDB: 1v7p_A*
Length = 134
Score = 54.0 bits (130), Expect = 4e-09
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 26/111 (23%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY + P + +A+ C D L ++ +E F+ QL
Sbjct: 4 CPSDWTAYDQHCYLAIGEP-QNWYEAERFCTEQAKDGHLVSIQSREEGNFV-AQLVSGFM 61
Query: 87 QRRKWYF--GGTQQSPNLWVNEDDPQRRKWYFGGTQQSPNLWVNEDGTNLN 135
R + Y G D + ++ W DG+ +
Sbjct: 62 HRSEIYVWIGLR----------DRREEQQCNP--------EWN--DGSKII 92
>1uv0_A Pancreatitis-associated protein 1; lectin, C-type, secreted,
inflammatory response, acute phase; 1.78A {Homo sapiens}
SCOP: d.169.1.1 PDB: 2go0_A
Length = 149
Score = 54.4 bits (131), Expect = 4e-09
Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 14/120 (11%)
Query: 20 QTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIM 78
+ + +RCP+ Y CY SP K+ DA L C+ S +L +V E F+
Sbjct: 5 RELPSARIRCPKGSKAYGSHCYALFLSP-KSWTDADLACQKRPSGNLVSVLSGAEGSFVS 63
Query: 79 YQLFWQDPQRRKWYFGGTQQSPN--------LWVNEDDPQRRKWYFGGTQQSPNLWVNED 130
+ + G + W + D W + +
Sbjct: 64 SLVKSIGNSYSYVWIGLHDPTQGTEPNGEGWEWSSSDVMNYFAWE----RNPSTISSPGH 119
>1umr_A Convulxin alpha, CVX alpha; lectin, C-type lectin, platelet,
sugar-binding protein, activator, snake venom; 2.40A
{Crotalus durissus terrificus} SCOP: d.169.1.1 PDB:
1uos_A
Length = 135
Score = 53.6 bits (129), Expect = 5e-09
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQ 84
L CP W Y CYR DA+ C + L ++ A E F+ + Q
Sbjct: 2 LHCPSDWYYYDQHCYRIFNEE-MNWEDAEWFCTKQAKGAHLVSIKSAKEADFV-AWMVTQ 59
Query: 85 DPQRRKWYF 93
+ + +
Sbjct: 60 NIEESFSHV 68
>3gpr_C Rhodocetin subunit gamma; disulfide bond, lectin, secreted,
toxin, cell adhesion; 3.20A {Calloselasma rhodostoma}
Length = 134
Score = 53.6 bits (129), Expect = 5e-09
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQ 84
C W Y CY+ P KT ++A+ C + L ++ E F+ QL
Sbjct: 1 FNCLPGWSAYDQHCYQAFNEP-KTWDEAERFCTEQAKRGHLVSIGSDGEADFV-AQLVTN 58
Query: 85 DPQRRKWYF 93
+ +R + Y
Sbjct: 59 NIKRPELYV 67
>3bx4_A Aggretin alpha chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_A
Length = 136
Score = 53.2 bits (128), Expect = 6e-09
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
C W Y CY+ KT ++A+ C++ + + LA++ E F+ + + +D
Sbjct: 5 CDFGWSPYDQHCYQAFNEQ-KTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQKDE 63
Query: 87 QRRKWYF 93
+ Y
Sbjct: 64 LADEDYV 70
>2e3x_B Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 134
Score = 53.2 bits (128), Expect = 8e-09
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQ 84
L CP YR CYR K KT A+ C + L ++ +E F+ +L
Sbjct: 1 LDCPPDSSLYRYFCYRVFKEH-KTWEAAERFCMEHPNNGHLVSIESMEEAEFV-AKLLSN 58
Query: 85 DPQRRKWYF 93
+ +F
Sbjct: 59 TTGKFITHF 67
>1sb2_A Rhodocetin alpha subunit; C-type lectin, domain swapping, toxin;
1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB:
3gpr_A
Length = 133
Score = 52.5 bits (126), Expect = 1e-08
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
CP W + CYR K KT +A+ C + + L ++ + E F+ + +
Sbjct: 2 CPDGWSSTKSYCYRPFKEK-KTWEEAERFCTEQEKEAHLVSMENRLEAVFV-DMVMENNF 59
Query: 87 QRRKWYF 93
+ + +
Sbjct: 60 ENKIYRS 66
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 52.7 bits (127), Expect = 1e-08
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 255 FTAEAIAIFYCIKKISDMKIKKAIIFSDNKSVLNGIDNIQQRNNIIQLIKQEYYFASTNG 314
E A Y +KK S + +K I D + + N + + +
Sbjct: 51 VAGEIAAALYAVKKASQLGVK-IRILHDYAGIAFWATGEWKAKN--EFTQAYAKLMNQYR 107
Query: 315 SQISFMWIPSHSNIALNDKADQLAKNSINSK 345
SF + +HS ND D AK+++ +
Sbjct: 108 GIYSFEKVKAHSGNEFNDYVDMKAKSALGIR 138
>1j34_A Coagulation factor IX-binding protein A chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_A* 1j35_A* 1x2t_A* 1x2w_A
1ixx_A 1y17_A 1wt9_A 1iod_A*
Length = 129
Score = 52.0 bits (125), Expect = 2e-08
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY+ K KT +DA+ C + L ++ A E F+ QL ++
Sbjct: 2 CPSGWSSYEGHCYKPFKLY-KTWDDAERFCTEQAKGGHLVSIESAGEADFV-AQLVTENI 59
Query: 87 QRRKWYF 93
Q K Y
Sbjct: 60 QNTKSYV 66
>3alu_A Lectin CEL-IV, C-type; C-type lectin, raffinose, sugar binding
protein; HET: RAF; 1.65A {Cucumaria echinata} PDB:
3als_A* 3alt_A*
Length = 157
Score = 52.2 bits (125), Expect = 2e-08
Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 30/119 (25%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL-----------DSDLANVNDADEHGFI 77
CP W + C+R + ++A+ C+ LA+++ A+ F+
Sbjct: 5 CPPLWTGFNGKCFRLFHNH-LNFDNAENACRQFGLASCSGDELATGHLASIHSAESQAFL 63
Query: 78 MYQLFWQDPQRRKWYFGGTQQSPNLWVNEDDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 135
+ P +P ++ G + + DG++++
Sbjct: 64 TELVKTSLPD-----LITGGWAPQVY------------IGMKVGSTNSDQTWTDGSSVD 105
>1fvu_A Botrocetin alpha chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_B
1u0n_B 1u0o_A
Length = 133
Score = 50.5 bits (121), Expect = 6e-08
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y +CY+F + DA+ C L ++ + + L ++
Sbjct: 2 CPSGWSSYEGNCYKFFQQK-MNWADAERFCSEQAKGGHLVSIKIYSKEKDFVGDLVTKNI 60
Query: 87 QRRKWYF 93
Q Y
Sbjct: 61 QSSDLYA 67
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 1e-07
Identities = 88/580 (15%), Positives = 166/580 (28%), Gaps = 172/580 (29%)
Query: 25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM------ 78
++ +H QY+D F + + +CK + ++ +E I+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVD-----NFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 79 ---YQLFW---QDPQRRKWYFGGTQQSPNL-WVNE------DDPQR-RKWY-------FG 117
+LFW + F N ++ P + Y +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 118 GTQQSPNLWVN--EDGTNLNELDAAFLPEPADNVQ--------RDYLAYSFSQSLKR--- 164
Q V+ + L + A PA NV + ++A S K
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 165 ------W-GFERVTGMEPLLFICEASIQKLHYLL------NDDRTYQYGMDIENPDKIPR 211
W + E +L + +QKL Y + D + + I + R
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 212 GPYFIKQPT---------DV-------VFDLS-K-----RNSNTGFAFIINNENFQYRLP 249
+K +V F+LS K R F+ L
Sbjct: 236 --RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-TDFLSAATTTHISLD 292
Query: 250 HEASIFT-AEAIAIFYCIKKISDMKIKK-------------AIIFSDNKSVLNGIDNIQQ 295
H + T E ++ K D + + +II + L DN +
Sbjct: 293 HHSMTLTPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 296 RN-----NIIQL--------IKQEYYFAST---NGSQI-----SFMWIPSHSNIALNDKA 334
N II+ ++ + + + I S +W + +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-V 408
Query: 335 DQLAKNS------------INSKLLDFYIQDDLKNHLRKNIVKLYNDQWTNIQNNKLRTI 382
++L K S I S L+ ++ + + L ++IV YN T ++ +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 383 KDNTTLWKTS--LRKIRNEE--ILLTRLRIGHTRITHSYL---F--TKTPHPICTCGFPL 433
D L+ I + E L + +L F K H
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMV----------FLDFRFLEQKIRHDSTAWNASG 518
Query: 434 TVKHIF-ECNKYKKFREKLSLPSIEIALSDNENMAEKTIK 472
++ + + YK + + DN+ E+ +
Sbjct: 519 SILNTLQQLKFYKPY------------ICDNDPKYERLVN 546
Score = 42.9 bits (100), Expect = 2e-04
Identities = 40/296 (13%), Positives = 94/296 (31%), Gaps = 67/296 (22%)
Query: 142 LPEPADNV---QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQ 198
LP + +A S L W + + L I E+S+ L + R
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEYRKMF 375
Query: 199 YGMDIENPD-KIPRGPYFI---KQPTDVVFDLSKRNSNTGFAFIINNENFQYRLPHEASI 254
+ + P IP + V + + + +P
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-KQPKESTISIPS---- 430
Query: 255 FTAEAIAIFYCIKKISDMKIKKAIIFSDNKSVLNGIDNIQQRNNIIQLIKQEYYF----- 309
I + +K ++ + ++I+ D+ ++ D+ +++I +Y++
Sbjct: 431 -----IYLELKVKLENEYALHRSIV--DHYNIPKTFDS----DDLIPPYLDQYFYSHIGH 479
Query: 310 --ASTNGSQ---------ISFMWIPS---HSNIALNDKADQLAKNSINSKLLDF-----Y 350
+ + + F ++ H + A N A SI + L Y
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN------ASGSILNTLQQLKFYKPY 533
Query: 351 IQD----------DLKNHLRKNIVKLYNDQWTNIQNNKLRTIKDNTTLWKTSLRKI 396
I D + + L K L ++T++ L ++ +++ + +++
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA--EDEAIFEEAHKQV 587
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP:
d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A*
1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1*
2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1*
1fif_A 1fih_A*
Length = 149
Score = 49.7 bits (119), Expect = 2e-07
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 8/83 (9%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD 85
+L + + + K C L +A +A+E+ I Q+
Sbjct: 25 KLHAFSMGKKSGKKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAI------QE 77
Query: 86 PQRRKWYFGGT-QQSPNLWVNED 107
+ + G T + + ++
Sbjct: 78 VAKTSAFLGITDEVTEGQFMYVT 100
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense,
metalloprotein, sugar binding protein; 1.90A {Rattus
norvegicus} SCOP: d.169.1.1 h.1.1.1
Length = 168
Score = 49.7 bits (119), Expect = 2e-07
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 8/83 (9%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD 85
+L + + + K C L +A +A+E+ I Q+
Sbjct: 44 KLHAFSMGKKSGKKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAI------QE 96
Query: 86 PQRRKWYFGGT-QQSPNLWVNED 107
+ + G T + + ++
Sbjct: 97 VAKTSAFLGITDEVTEGQFMYVT 119
>1hup_A Mannose-binding protein; alpha-helical coiled-coil, C-type lectin;
2.50A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Length = 141
Score = 48.9 bits (117), Expect = 3e-07
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 8/81 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
Q + + T K C + +A +A E+G I + +
Sbjct: 20 TFSLGKQVGNKFFLTNGEI-MTFEKVKALCVKFQASVATPRNAAENGAIQNLI------K 72
Query: 89 RKWYFGGT-QQSPNLWVNEDD 108
+ + G T +++ +V+
Sbjct: 73 EEAFLGITDEKTEGQFVDLTG 93
>1wk1_A Hypothetical protein YK1067A12; lectin C-type domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Caenorhabditis elegans} SCOP:
d.169.1.1
Length = 150
Score = 46.4 bits (110), Expect = 2e-06
Identities = 12/108 (11%), Positives = 25/108 (23%), Gaps = 20/108 (18%)
Query: 33 WV-QYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKW 91
+ A+ C S LA+ D++ F ++
Sbjct: 2 SSGSSGVKFLTVNDDI-LSMPQARNFCASAGGYLADDLGDDKNNFYSSIA-----ANTQF 55
Query: 92 YFGGTQQSPNLWVNED---------DPQRRKWYFGGTQQSPNLWVNED 130
+ G + S + + + W G P+
Sbjct: 56 WIGLFKNSDGQFYWDRGQGINPDLLNQPITYWANG----EPSNDPTRQ 99
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 43.7 bits (103), Expect = 3e-05
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 17/134 (12%)
Query: 227 SKRNSNTGFAFII----NNENFQYRLPHEASIFTAEAIAIFYCIKKISDMKIKKAIIFSD 282
S A + LP S AE IA+ + + + KK +++D
Sbjct: 32 SFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIAL---TQALKMAEGKKLNVYTD 88
Query: 283 NKSVLNGIDNIQQRNN---IIQLIKQEYYFASTNGSQISFMWIPSHS-----NIALNDKA 334
++ ++ I A ++S + P H N A
Sbjct: 89 SRYAF-ATAHVHSEGREIKNKNEILALLK-ALFLPKRLSIIHCPGHQKGNSAEARGNRMA 146
Query: 335 DQLAKNSINSKLLD 348
DQ A+ + +L+
Sbjct: 147 DQAAREAAMKAVLE 160
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 42.9 bits (102), Expect = 4e-05
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 257 AEAIAIFYCIKKISDMKIKKAIIFSDNKSVLNGIDN-IQ--QRNN--------------I 299
AE A I++ I K ++++++ +NGI N +Q ++N
Sbjct: 53 AEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDF 112
Query: 300 IQLIKQEYYFASTNGSQISFMWIPSHSNIALNDKADQLAKNSIN 343
+ L + T G I +M +P HS N++AD+LA+
Sbjct: 113 VALERL------TQGMDIQWMHVPGHSGFIGNEEADRLAREGAK 150
>1byf_A TC14, protein (polyandrocarpa lectin); C-type lectin,
galactose-specific, sugar binding protein; 2.00A
{Polyandrocarpa misakiensis} SCOP: d.169.1.1 PDB:
1tlg_A*
Length = 125
Score = 42.0 bits (99), Expect = 4e-05
Identities = 18/99 (18%), Positives = 24/99 (24%), Gaps = 23/99 (23%)
Query: 38 DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQ 97
D F DA C+S L + D F + W G
Sbjct: 2 DYEILFSDET-MNYADAGTYCQSRGMALVSSAMRDSTMVKAILAFTEVKGHDYW-VGAD- 58
Query: 98 QSPNLWVNEDDPQRRKWYFGGTQQSPNLWVNEDGTNLNE 136
+ Q + F LW DG +L
Sbjct: 59 ----------NLQDGAYNF--------LWN--DGVSLPT 77
>2msb_A Mannose-binding protein-A; lectin; HET: BMA MAN; 1.70A {Rattus
rattus} SCOP: d.169.1.1 PDB: 1msb_A 1ytt_A*
Length = 115
Score = 41.5 bits (98), Expect = 6e-05
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 38 DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT- 96
+ + K C L +A +A+E+ I Q+ + + G T
Sbjct: 3 KKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAI------QEVAKTSAFLGITD 55
Query: 97 QQSPNLWVNED 107
+ + ++
Sbjct: 56 EVTEGQFMYVT 66
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 41.7 bits (98), Expect = 1e-04
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQ 98
Y + + P A+ C+ +DL + + E ++ L + W G
Sbjct: 2 TYHYSEKP-MNWQRARRFCRDNYTDLVAIQNKAEIEYLEKTL--PFSRSYYW-IGIRKIG 57
Query: 99 SPNLWVNEDDPQRRKWYFGGTQQSPNLWVN-ED 130
WV + + G + PN N ED
Sbjct: 58 GIWTWVGTNKSLTEEAENWGDGE-PNNKKNKED 89
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 41.3 bits (97), Expect = 2e-04
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------FW---QDPQRRK 90
Y T ++A C+ + L + + +E ++ L +W +
Sbjct: 2 SYNTSTEA-MTYDEASAYCQQRYTHLVAIQNKEEIEYLNSILSYSPSYYWIGIRK-VNNV 59
Query: 91 WYFGGTQQSPN 101
W + GTQ+
Sbjct: 60 WVWVGTQKPLT 70
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune
system, membr protein; HET: TYS SIA GAL NAG FUC NGA;
1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB:
1g1r_A* 1g1q_A* 1fsb_A
Length = 162
Score = 40.5 bits (95), Expect = 2e-04
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL 81
Y + + N ++ C++ +DL + + +E ++ L
Sbjct: 2 TYHYSTKA-YSWNISRKYCQNRYTDLVAIQNKNEIDYLNKVL 42
>1rdl_1 SUB-MBP-C, mannose-binding protein-C; C-type lectin,
calcium-binding protein; HET: MMA; 1.70A {Rattus rattus}
SCOP: d.169.1.1 PDB: 1rdj_1* 1rdk_1* 1rdi_1* 1rdm_1*
1rdn_1* 1rdo_1 1bv4_A 1kza_1* 1kzb_1* 1kzc_1* 1kzd_1*
1kze_1*
Length = 113
Score = 39.2 bits (92), Expect = 4e-04
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQ 98
+ N AK C L +A +A+E+ I Q+ + + G T Q+
Sbjct: 3 YFMSSVRR-MPLNRAKALCSELQGTVATPRNAEENRAI------QNVAKDVAFLGITDQR 55
Query: 99 SPNLWVNED 107
+ N++ +
Sbjct: 56 TENVFEDLT 64
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 39.8 bits (94), Expect = 4e-04
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 23/88 (26%)
Query: 278 IIFSDNKSVLNGI----DNIQQRN----------NI---IQLIKQEYYFASTNGSQISFM 320
I+ +D++ V GI N ++R N+ +L QI +
Sbjct: 66 ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAA------LGQHQIKWE 119
Query: 321 WIPSHSNIALNDKADQLAKNSINSKLLD 348
W+ H+ N++AD+LA+ + + L+
Sbjct: 120 WVKGHAGHPENERADELARAAAMNPTLE 147
>3fd4_A Glycoprotein GP42; C type lectin, virus entry, membrane fusion,
HOST-virus interaction, lectin, membrane, transmembrane,
viral protein; 2.40A {Human herpesvirus 4} PDB: 1kg0_C
Length = 191
Score = 39.1 bits (90), Expect = 0.001
Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 15/86 (17%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
++ Y+ C+ F K T N C L + ++ +
Sbjct: 72 TREYTFSYKGCCFYFTKK-KHTWNGCFQACAELYPCTYFYGPTPDILPVVTRNL------ 124
Query: 89 RKWYFGGTQQSPNLWVNEDDPQRRKW 114
+LWV W
Sbjct: 125 --------NAIESLWVGVYRVGEGNW 142
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 37.5 bits (88), Expect = 0.002
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 30/93 (32%)
Query: 276 KAIIFSDNKSVLNGI----DNIQQRN-----------------NIIQLIKQEYYFASTNG 314
+ I +D++ L I N ++R I QLIK+E
Sbjct: 67 EVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKE-------- 118
Query: 315 SQISFMWIPSHSNIALNDKADQLAKNSINSKLL 347
++ W+P+H I N++ D+L I L
Sbjct: 119 -KVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLF 150
>1h8u_A MBP, eosinophil granule major basic protein 1; lectin, eosinophil
granule protein, EMBP; 1.8A {Homo sapiens} SCOP:
d.169.1.1 PDB: 2brs_A*
Length = 117
Score = 37.0 bits (86), Expect = 0.002
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 24/97 (24%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQ 98
Y V+S +T + A C+ +L ++++ + + I Q + W GG
Sbjct: 3 RYLLVRSL-QTFSQAWFTCRRCYRGNLVSIHNFNINYRI-QCSVSALNQGQVW-IGGRIT 59
Query: 99 SPNLWVNEDDPQRRKWYFGGTQQSPNLWVNEDGTNLN 135
+ R++ WV DG+ N
Sbjct: 60 --------GSGRCRRFQ----------WV--DGSRWN 76
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 37.1 bits (87), Expect = 0.004
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 316 QISFMWIPSHSNIALNDKADQLAKNSINSK 345
QI + W+ H+ A N++ DQLA+ + +
Sbjct: 117 QIDWRWVKGHAGHAENERCDQLARAAAEAN 146
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 35.5 bits (83), Expect = 0.010
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 316 QISFMWIPSHSNIALNDKADQLAKNSINSK 345
+++F + HS+ N +AD+LA+ +I
Sbjct: 116 RVTFHKVKGHSDNPYNSRADELARLAIKEN 145
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 36.0 bits (84), Expect = 0.010
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 316 QISFMWIPSHSNIALNDKADQLAKNSINSK 345
++ F ++ H+ N++ D+ A+ S+
Sbjct: 120 RVRFHFVKGHTGHPENERVDREARRQAQSQ 149
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 33.0 bits (76), Expect = 0.070
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 15/90 (16%)
Query: 256 TAEAIAIFYCIKKISDMKIKKAIIFSDNKSVLNGIDNIQQRNNI------IQLIKQEYYF 309
AE + + + +A + D+K V+ + + + +Q F
Sbjct: 48 VAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQF 107
Query: 310 ASTNGSQISFMWIPSHSNIALNDKADQLAK 339
+I++ W+P N AD+LA
Sbjct: 108 -----RRINYEWVPRA----RNTYADRLAN 128
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded
RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus
tokodaii} PDB: 3aly_A
Length = 149
Score = 32.7 bits (75), Expect = 0.12
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 32/136 (23%)
Query: 224 FDLSKRNSNT----GFAFII---NNENFQYRLPHEASIF-----TAEAIAIFYCIKKISD 271
FD N F F+I N + Y L + AE + ++ +
Sbjct: 6 FDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLR 65
Query: 272 MKIKKAIIFSDNKSVLNGI--------DNIQQRNNIIQLIKQEYYFASTNGSQISFMWIP 323
+ I II D++ V+ + I +K++ + +W+P
Sbjct: 66 LGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL--------NATLIWVP 117
Query: 324 SHSNIALNDKADQLAK 339
N AD+L++
Sbjct: 118 REENKE----ADRLSR 129
>1b22_A DNA repair protein RAD51; DNA binding, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, DNA binding protein; HET: DNA; NMR {Homo
sapiens} SCOP: a.60.4.1
Length = 114
Score = 30.7 bits (69), Expect = 0.30
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 251 EASIFTAEAIAI-----FYCIKKISD---MKIKKAIIFSDNKSVLNGIDNIQQRNNIIQL 302
EA T EA+A IK IS+ KI + Q+R+ IIQ+
Sbjct: 43 EAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQI 102
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.39
Identities = 6/51 (11%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 352 QDDLKNHLRKNIVKLYNDQWTNIQNNKLRTIKDNTTLWKTSLRKIRNEEIL 402
+ + + +K++ ++W Q+ ++ K N + + + + +I+
Sbjct: 109 EQEWREKAKKDL-----EEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity,
apoptosis, hydrolase, protease protease; 2.05A {Homo
sapiens}
Length = 302
Score = 31.2 bits (70), Expect = 0.63
Identities = 10/57 (17%), Positives = 19/57 (33%)
Query: 205 NPDKIPRGPYFIKQPTDVVFDLSKRNSNTGFAFIINNENFQYRLPHEASIFTAEAIA 261
+ KQ + ++ + ++S T A II NE F + +
Sbjct: 32 KLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMT 88
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ;
1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A*
1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A*
2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A*
3d6h_A* 2hbz_A* 2hbr_A* ...
Length = 178
Score = 29.2 bits (65), Expect = 2.0
Identities = 10/57 (17%), Positives = 19/57 (33%)
Query: 205 NPDKIPRGPYFIKQPTDVVFDLSKRNSNTGFAFIINNENFQYRLPHEASIFTAEAIA 261
+ KQ + ++ + ++S T A II NE F + +
Sbjct: 15 KLCSLEEAQRIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMT 71
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 28.6 bits (64), Expect = 4.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 212 GPYFIKQPTDVVFDLSKRNSN 232
GP F+++P+ V+F L
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKK 25
>3k7b_A Protein A33; C-type lectin-like domain, homodimer, poxvirus, EEV,
EV, VIR protein; 2.10A {Vaccinia virus WR}
Length = 96
Score = 27.1 bits (59), Expect = 4.4
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 36 YRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMY 79
Y+ SCY + +DA NC + S L N +D I Y
Sbjct: 16 YQGSCYILHSDY-QMFSDAAANCTAESSTLPNKSDVMITWLIDY 58
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 28.5 bits (64), Expect = 5.4
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 94 GGTQQSPNLWVNEDDPQRRKWYFGGTQQSP 123
+ P +++ P + KW+ G ++SP
Sbjct: 9 PKPYERPADFIDPGKPSKCKWHLGTAEKSP 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.417
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,297,467
Number of extensions: 426270
Number of successful extensions: 1078
Number of sequences better than 10.0: 1
Number of HSP's gapped: 990
Number of HSP's successfully gapped: 121
Length of query: 483
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 386
Effective length of database: 3,993,456
Effective search space: 1541474016
Effective search space used: 1541474016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.8 bits)