BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14886
(505 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 115/261 (44%), Gaps = 24/261 (9%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDP-AMYQ 65
+ + C G + SW+++GELL + + FI NV T++ L ++ Y
Sbjct: 119 VAFECRINGSEPLQVSWYKDGELLKDDA----NLQTSFIH-NVATLQILQTDQSHVGQYN 173
Query: 66 CRAKNQLKTRYSSAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
C A N L T SSA+L + + P F +P+ + GE G T C+ K W
Sbjct: 174 CSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESG--TFKCHVTGTAPIKITW 231
Query: 124 KKDGNIIGSGGRRK--IFEN-GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
KD I GG K + EN L + V++ D+G Y+C A+NV G D +L V P
Sbjct: 232 AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 291
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI---GNMDLNELETPNIN 237
+ ++L P + + + C ++ +W + I ++ +E+
Sbjct: 292 RFIKKLEPSRIVKQDEHTRYECKIGGSP--EIKVLWYKDETEIQESSKFRMSFVESV--- 346
Query: 238 IDGGLLEITNASFADAGEYEC 258
+LE+ N S D+G+Y C
Sbjct: 347 ---AVLEMYNLSVEDSGDYTC 364
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 111/261 (42%), Gaps = 17/261 (6%)
Query: 9 WTCEAFGVPDVTYSWFRN-GELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
+ C+ G P++ W+++ E+ S + F++ + Y D Y C
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMS-----FVESVAVLEMYNLSVEDSGDYTCE 365
Query: 68 AKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG 127
A N + SS L+V P F+K+P ET +G +V + C + P + W KD
Sbjct: 366 AHNAAGSASSSTSLKVKE-PPVFRKKPHPVETL--KGADVHLECELQGTPPFQVSWHKDK 422
Query: 128 NIIGSGGRRKIFENGNLL---ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE 184
+ SG + KI L I V D G Y C A+N G D G + + P + +
Sbjct: 423 RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVK 482
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 244
+L I+ +QL+ + E + VA W + I N + + NI L+
Sbjct: 483 KL-SDISTVVGEEVQLQATIEGAEPISVA--WFKDKGEIVRESDNIWISYSENI--ATLQ 537
Query: 245 ITNASFADAGEYECVVKSTVG 265
+ A A+AG+Y C +K+ G
Sbjct: 538 FSRAEPANAGKYTCQIKNEAG 558
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 109/276 (39%), Gaps = 32/276 (11%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--DNV--LTIRYLNPERDPA 62
+T C+ G P++ +W++ E L Y +Q +NV L I ++ D
Sbjct: 23 ITLQCKVDGTPEIRIAWYK-------EHTKLRSAPAYKMQFKNNVASLVINKVD-HSDVG 74
Query: 63 MYQCRAKNQLKTRYSSAQLRV--LTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
Y C+A+N + SSA L + L PSF ++ + + G V C + +
Sbjct: 75 EYTCKAENSVGAVASSAVLVIKERKLPPSFARKL--KDVHETLGFPVAFECRINGSEPLQ 132
Query: 121 FVWKKDGNIIGSGGRRK---IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
W KDG ++ + I L I + G Y+C+A+N G S +L +
Sbjct: 133 VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLS 192
Query: 178 HG--PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI---GNMDLNELE 232
P +++ P + +A + +C H + W + I GN + +E
Sbjct: 193 EHEVPPFFDLKPVSVDLALGESGTFKC--HVTGTAPIKITWAKDNREIRPGGNYKMTLVE 250
Query: 233 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS 268
+ L + + DAG+Y C + GK S
Sbjct: 251 ------NTATLTVLKVTKGDAGQYTCYASNVAGKDS 280
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 104/266 (39%), Gaps = 25/266 (9%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-DPAMYQC 66
T+ C G + +W ++ N E P + ++ N T+ L + D Y C
Sbjct: 216 TFKCHVTGTAPIKITWAKD----NREIRPGGNYKMTLVE-NTATLTVLKVTKGDAGQYTC 270
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
A N SAQL V P F K+ LE + + C +P+ K +W KD
Sbjct: 271 YASNVAGKDSCSAQLGVQE-PPRFIKK-LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 328
Query: 127 GNII--GSGGRRKIFENGNLL-ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
I S R E+ +L + +S +DSG Y+C A N G S L V P +
Sbjct: 329 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR 388
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN----MDLNELETPNINID 239
++ P T+ ++ L C V++ +R G M N L +
Sbjct: 389 KKPHPVETLKG-ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS------ 441
Query: 240 GGLLEITNASFADAGEYECVVKSTVG 265
+ I N AD GEY+C + VG
Sbjct: 442 ---IHILNVDSADIGEYQCKASNDVG 464
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 73/181 (40%), Gaps = 19/181 (10%)
Query: 5 ADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLT-IRYLNPER-DPA 62
AD+ CE G P SW ++ L S + + +N LT I LN + D
Sbjct: 400 ADVHLECELQGTPPFQVSWHKDKRELRS------GKKYKIMSENFLTSIHILNVDSADIG 453
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLK--PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
YQC+A N + S + +TLK P F K+ + T GE V + E A
Sbjct: 454 EYQCKASNDVG---SDTCVGSITLKAPPRFVKKLSDISTVVGE--EVQLQATIEGAEPIS 508
Query: 121 FVWKKD-GNIIGSGGRRKIFENGNLLISPVSRDD---SGIYSCTATNVHGMDESKGRLIV 176
W KD G I+ I + N+ SR + +G Y+C N G E L V
Sbjct: 509 VAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Query: 177 L 177
L
Sbjct: 569 L 569
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 113/263 (42%), Gaps = 24/263 (9%)
Query: 11 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-DNVLTIRYLNPERDPAMYQCRAK 69
CE G P T W +N + LN P+ R + L I L P D +Y+C A+
Sbjct: 143 CEVIGDPMPTIHWQKNQQDLN----PIPGDSRVVVLPSGALQISRLQPG-DSGVYRCSAR 197
Query: 70 NQLKTRYSS-AQLRVLT-----LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
N TR + A++R+L+ + F +RP S A EG + + C P P F W
Sbjct: 198 NPASTRTGNEAEVRILSDPGLHRQLYFLQRP--SNVIAIEGKDAVLECCVSGYPPPSFTW 255
Query: 124 KKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 182
+ +I ++ + NLLIS V+ DDSG Y+C T + + L VL P +
Sbjct: 256 LRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV-PPW 314
Query: 183 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL 242
+ P + +++ C+ + + V W NG + D ++ + G
Sbjct: 315 FLNHPSNLYAYESMDIEFECAVSGKPVPTVN--WMKNGDVVIPSDYFQI------VGGSN 366
Query: 243 LEITNASFADAGEYECVVKSTVG 265
L I +D G Y+CV ++ G
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAG 389
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 9/171 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
D C G P +++W R GE E + L + + + L I + + D Y
Sbjct: 238 DAVLECCVSGYPPPSFTWLR-GE----EVIQLRSKKYSLLGGSNLLISNVT-DDDSGTYT 291
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C + + +SA+L VL + P F P S YA E ++ C P P W K
Sbjct: 292 CVVTYKNENISASAELTVL-VPPWFLNHP--SNLYAYESMDIEFECAVSGKPVPTVNWMK 348
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+G+++ +I NL I V + D G Y C A N G +S +LIV
Sbjct: 349 NGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 97 SETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSG--GRRKIFENGNLLISPV---- 149
S+ GGNV + C+ E+ P WKKDG I+ G R++ NG+LLI +
Sbjct: 29 SDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSR 88
Query: 150 -SRDDSGIYSCTAT-NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE 207
+ D G+Y C A+ G S+ +++ GP + IT + L+C +
Sbjct: 89 HHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGD 148
Query: 208 ELLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEYECVVKS 262
+ + W N DLN + ++ + + G L+I+ D+G Y C ++
Sbjct: 149 PMPTIH--WQKN-----QQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARN 198
>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains
From Drosophila Neuroglian At 2.0 Angstroms
Length = 205
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 295 ATIQWTDGATNGRPITHYKIIARTNWN-STWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353
A I W N PI HY I T++ ++W E V ++S + P
Sbjct: 21 AEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKV---------PNTDSSFVVQMSP 71
Query: 354 WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPRE 413
W+ Y F+VIA N++G PS+ S T D P++ P +L ISW P+P
Sbjct: 72 WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEI 131
Query: 414 KQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVG 472
+ NAPN +Y + W++ +++ + ++ I + P+ + +Y +KV AIND G
Sbjct: 132 EHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPT---FVKYLIKVVAINDRG 188
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 15/194 (7%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER---DPAMY 64
T C+A G P T W++ GE + ++ ++ +R ++ + D +Y
Sbjct: 28 TLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87
Query: 65 QCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFV 122
C A+N L S A L V L+ F++ P S+ G + C P P+P
Sbjct: 88 VCVARNYLGEAVSHDASLEVAILRDDFRQNP--SDVMVAVGEPAVMECQPPRGHPEPTIS 145
Query: 123 WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPS 181
WKKDG+ + R G L+I+ + D+G Y C TN+ G ES+ L VL PS
Sbjct: 146 WKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205
Query: 182 YYEQLPPKITIAAH 195
+ + AAH
Sbjct: 206 F-------VKAAAH 212
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 76/202 (37%), Gaps = 26/202 (12%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG----- 133
LR P + P S+ +G T+ C E P P W K G + +
Sbjct: 1 GSLRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR 58
Query: 134 GRRKIFENGNLLISPV-----SRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLP 187
R + +G+L + SR D G+Y C A N G S L V + Q P
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP 118
Query: 188 PKITIAAHRNLQLRCS---AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 244
+ +A + C H E + W +G + + D I I GG L
Sbjct: 119 SDVMVAVGEPAVMECQPPRGHPEPTIS----WKKDGSPLDDKD------ERITIRGGKLM 168
Query: 245 ITNASFADAGEYECVVKSTVGK 266
IT +DAG+Y CV + VG+
Sbjct: 169 ITYTRKSDAGKYVCVGTNMVGE 190
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 19/183 (10%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTI-RYLN--PERDPAMY 64
T C+ G P+ T WF++GE +++ + R +D L R + E+D Y
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNE---KKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84
Query: 65 QCRAKNQLKTRYSS-AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFV 122
C AKN++ S A L++ L+ F+ P ++ GE + C P + P+P +
Sbjct: 85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE--TALLECGPPKGIPEPTLI 142
Query: 123 WKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GR 173
W KDG + G+ R +I + GNLLIS V D G Y C A N+ G ES +
Sbjct: 143 WIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAK 202
Query: 174 LIV 176
LIV
Sbjct: 203 LIV 205
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 108 TIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLL----ISPVSRDDSGIYSCT 160
T+ C E P+P W KDG + + + R F++G L + D G Y C
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 161 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 220
A N G S+ + + ++ PK T A L + + + IW +G
Sbjct: 88 AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG 147
Query: 221 VRIGNMDLNEL-ETPNINI-DGGLLEITNASFADAGEYECVVKSTVG 265
V + ++ + + I DGG L I+N D G Y+C+ ++ VG
Sbjct: 148 VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 19/183 (10%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTI-RYLN--PERDPAMY 64
T C+ G P+ T WF++GE +++ + R +D L R + E+D Y
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNE---KKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84
Query: 65 QCRAKNQLKTRYSS-AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFV 122
C AKN++ S A L++ L+ F+ P ++ GE + C P + P+P +
Sbjct: 85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE--TALLECGPPKGIPEPTLI 142
Query: 123 WKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GR 173
W KDG + G+ R +I + GNLLIS V D G Y C A N+ G ES +
Sbjct: 143 WIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAK 202
Query: 174 LIV 176
LIV
Sbjct: 203 LIV 205
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 108 TIFCNPEAAPKPKFVWKKDGNIIGSGGR---RKIFENGNLL----ISPVSRDDSGIYSCT 160
T+ C E P+P W KDG + + + R F++G L + D G Y C
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87
Query: 161 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 220
A N G S+ + + ++ PK T A L + + + IW +G
Sbjct: 88 AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDG 147
Query: 221 VRIGNMDLNEL-ETPNINI-DGGLLEITNASFADAGEYECVVKSTVG 265
V + ++ + + I DGG L I+N D G Y+C+ ++ VG
Sbjct: 148 VPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 108/263 (41%), Gaps = 32/263 (12%)
Query: 17 PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPAMYQCRAKNQL-- 72
P ++Y W LLN + R+F+ L I N D Y C A + +
Sbjct: 129 PGLSYRW-----LLNEFPNFIPTDGRHFVSQTTGNLYIARTNAS-DLGNYSCLATSHMDF 182
Query: 73 --KTRYSS-AQLRVLT-----LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
K+ +S AQL + PS K R +ETYA G VT+ C P P+ W+
Sbjct: 183 STKSVFSKFAQLNLAAEDTRLFAPSIKAR-FPAETYALVGQQVTLECFAFGNPVPRIKWR 241
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE 184
K + GS + L I VS +D G Y C A N G D +GR+IV P + +
Sbjct: 242 K---VDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLK 298
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 244
+ NL+ C+A + V W NG + + + + + G L
Sbjct: 299 VI-SDTEADIGSNLRWGCAAAGKPRPTVR--WLRNGEPLASQN-------RVEVLAGDLR 348
Query: 245 ITNASFADAGEYECVVKSTVGKI 267
+ S D+G Y+CV ++ G I
Sbjct: 349 FSKLSLEDSGMYQCVAENKHGTI 371
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 103/274 (37%), Gaps = 36/274 (13%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69
C A P TY W NG + LE R+ + L I +D +YQC A
Sbjct: 27 ACRARASPPATYRWKMNGT-----EMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLAS 81
Query: 70 NQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVW--KKD 126
N + T S + F K + A EG V + CNP A P + W +
Sbjct: 82 NPVGTVVSREAILRFGFLQEFSKEERDP-VKAHEGWGVMLPCNPPAHYPGLSYRWLLNEF 140
Query: 127 GNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV--------- 176
N I + GR + + GNL I+ + D G YSC AT+ MD S +
Sbjct: 141 PNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATS--HMDFSTKSVFSKFAQLNLAA 198
Query: 177 ----LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE 232
L PS + P + + + L C A + RI ++
Sbjct: 199 EDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPV-----------PRIKWRKVDGSL 247
Query: 233 TPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266
+P L+I + SF D G YEC +++ G+
Sbjct: 248 SPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGR 281
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 6 DLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+T C AFG P W + +G L ++ + L I ++ E D Y
Sbjct: 223 QVTLECFAFGNPVPRIKWRKVDGSL----------SPQWTTAEPTLQIPSVSFE-DEGTY 271
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
+C A+N K R + ++ +P + K + S+T A G N+ C P+P W
Sbjct: 272 ECEAENS-KGRDTVQGRIIVQAQPEWLK--VISDTEADIGSNLRWGCAAAGKPRPTVRWL 328
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
++G + S R ++ G+L S +S +DSG+Y C A N HG + L V
Sbjct: 329 RNGEPLASQNRVEVLA-GDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDP 61
D ++L W C A G P T W RNGE PL Q+R + L L+ E D
Sbjct: 306 DIGSNLRWGCAAAGKPRPTVRWLRNGE-------PLASQNRVEVLAGDLRFSKLSLE-DS 357
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
MYQC A+N+ T Y+SA+L V
Sbjct: 358 GMYQCVAENKHGTIYASAELAV 379
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 85/207 (41%), Gaps = 41/207 (19%)
Query: 85 TLKPSFKKRPLESETYAGEGG--NVTIFCNPEAAPKPKFVWKKDGNIIG-SGGRRKIFEN 141
T P F+ +PL S + E V + C A+P + WK +G + G R
Sbjct: 1 TFGPVFEDQPL-SVLFPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVG 59
Query: 142 GNLLI-SPVSRDDSGIYSCTATNVHGM---DESKGRLIVLHGPSYYEQLPPKITIAAHR- 196
GNL+I +P D+G+Y C A+N G E+ R L S E+ P + AH
Sbjct: 60 GNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDP----VKAHEG 115
Query: 197 -NLQLRCS--AHTEELLDVAYIWTHNGVRIGNMDLNELETPN-INIDG--------GLLE 244
+ L C+ AH L +Y W N E PN I DG G L
Sbjct: 116 WGVMLPCNPPAHYPGL---SYRWLLN------------EFPNFIPTDGRHFVSQTTGNLY 160
Query: 245 ITNASFADAGEYECVVKSTVGKISTKT 271
I + +D G Y C+ S + STK+
Sbjct: 161 IARTNASDLGNYSCLATSHM-DFSTKS 186
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 26/174 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--DNVLTIR-YLNPERDPA 62
++T++C A G P+ SWFRNG+L +E+ ++Y ++ + LT+R +N + P
Sbjct: 21 EMTFSCRASGSPEPAISWFRNGKL-------IEENEKYILKGSNTELTVRNIINSDGGP- 72
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 122
Y CRA N+ A L+V ++P + E+ TY E G VT+ C+ E P P+
Sbjct: 73 -YVCRATNKAGEDEKQAFLQVF-VQPHIIQLKNET-TY--ENGQVTLVCDAEGEPIPEIT 127
Query: 123 WKK--DGNIIGSG-----GRRKI---FENGNLLISPVSRDDSGIYSCTATNVHG 166
WK+ DG G GR ++ + +L I V DSG Y C A + G
Sbjct: 128 WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 7/169 (4%)
Query: 101 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYS 158
A G +T C +P+P W ++G +I + I + N L + + D G Y
Sbjct: 16 AERGEEMTFSCRASGSPEPAISWFRNGKLIEEN-EKYILKGSNTELTVRNIINSDGGPYV 74
Query: 159 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 218
C ATN G DE + L V P + QL + T + + L C A E + ++ +
Sbjct: 75 CRATNKAGEDEKQAFLQVFVQP-HIIQLKNETTY-ENGQVTLVCDAEGEPIPEITWKRAV 132
Query: 219 NGVRI--GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265
+G G+ L+ L I + +D+G Y+C S +G
Sbjct: 133 DGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 9/166 (5%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
++ C+A G P +W + G+ ++S+ + + D +VL I+ L +RD A+Y+C
Sbjct: 25 SFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDG--AGSVLRIQPLRVQRDEAIYECT 82
Query: 68 AKNQLKTRYSSAQLRVL---TLKPSFKKRPLESETYAGEGG-NVTIFCNPEAAPKPKFVW 123
A N L +SA+L VL L P F + + E T+ C P P+ W
Sbjct: 83 ATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISW 142
Query: 124 KKDG---NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
KD + S GR K +G L I D G Y C ATN G
Sbjct: 143 FKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 188
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN- 143
KP F K P E G G V F C PKP+ W K G + S I F++G
Sbjct: 6 KPVFIKVP---EDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAG 62
Query: 144 --LLISP--VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-TIAAHRNL 198
L I P V RD++ IY CTATN G + +L VL EQLPP +I L
Sbjct: 63 SVLRIQPLRVQRDEA-IYECTATNSLGEINTSAKLSVLE----EEQLPPGFPSIDMGPQL 117
Query: 199 QLRCSAHTEELL-------DVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITN 247
++ A T +L D W + + + N + +L + G L+I +
Sbjct: 118 KVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRS-------GALQIES 170
Query: 248 ASFADAGEYECVVKSTVG 265
+ +D G+YECV ++ G
Sbjct: 171 SEESDQGKYECVATNSAG 188
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF-IQDNVLTIRYLNPERDPAMYQC 66
T C A G PD SWF++ ++ P R ++ L I + E D Y+C
Sbjct: 127 TMLCAAGGNPDPEISWFKDFLPVD----PATSNGRIKQLRSGALQIES-SEESDQGKYEC 181
Query: 67 RAKNQLKTRYSS 78
A N TRYS+
Sbjct: 182 VATNSAGTRYSA 193
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 9/166 (5%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
++ C+A G P +W + G+ ++S+ + + D +VL I+ L +RD A+Y+C
Sbjct: 26 SFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDG--AGSVLRIQPLRVQRDEAIYECT 83
Query: 68 AKNQLKTRYSSAQLRVL---TLKPSFKKRPLESETYAGEGG-NVTIFCNPEAAPKPKFVW 123
A N L +SA+L VL L F + + E G T+ C P P+ W
Sbjct: 84 ATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISW 143
Query: 124 KKDG---NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
KD + S GR K +G L I D G Y C ATN G
Sbjct: 144 FKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 189
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 85/197 (43%), Gaps = 32/197 (16%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN-- 143
KP F K P + +G G + C PKP+ W K G + S I F++G
Sbjct: 7 KPVFVKVPEDQTGLSG--GVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGS 64
Query: 144 -LLISP--VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP---PKITIAAH-- 195
L I P V RD++ IY CTATN G + +L VL +QLP P I +
Sbjct: 65 VLRIQPLRVQRDEA-IYECTATNSLGEINTSAKLSVLE----EDQLPSGFPTIDMGPQLK 119
Query: 196 -----RNLQLRCSAHTEELLDVAYIWTHNGV--RIGNMDLNELETPNINIDGGLLEITNA 248
R + C+A ++++ V N + +L + G L+I ++
Sbjct: 120 VVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRS-------GALQIESS 172
Query: 249 SFADAGEYECVVKSTVG 265
+D G+YECV ++ G
Sbjct: 173 EESDQGKYECVATNSAG 189
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF-IQDNVLTIRYLNPERDPAMYQC 66
T C A G PD SWF++ ++ P R ++ L I + E D Y+C
Sbjct: 128 TMLCAAGGNPDPEISWFKDFLPVD----PAASNGRIKQLRSGALQIES-SEESDQGKYEC 182
Query: 67 RAKNQLKTRYSS 78
A N TRYS+
Sbjct: 183 VATNSAGTRYSA 194
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 35/268 (13%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
+TC+ G P T SW ++G+ + ++VL I + E D MYQC
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAIGH-------------SESVLRIESVKKE-DKGMYQCF 407
Query: 68 AKNQLKTRYSSAQLRV-LTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
+N ++ +SA+L++ P ++ + ET G +V + C P P+ W+ D
Sbjct: 408 VRNDRESAEASAELKLGGRFDPPVIRQAFQEETME-PGPSVFLKCVAGGNPTPEISWELD 466
Query: 127 GNIIGSGGRRKIFE----NGNLL----ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
G I + R ++ + NG+++ I+ V +D G+Y C A + G+ E +L V +
Sbjct: 467 GKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV-Y 525
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
G Y Q+ K I A L + C + + +W + R ++ + PN
Sbjct: 526 GLPYIRQMEKK-AIVAGETLIVTCPVAGYPIDSI--VWERDN-RALPINRKQKVFPN--- 578
Query: 239 DGGLLEITNASF-ADAGEYECVVKSTVG 265
G L I N +D Y CV K+ G
Sbjct: 579 --GTLIIENVERNSDQATYTCVAKNQEG 604
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 120/271 (44%), Gaps = 36/271 (13%)
Query: 11 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY----FIQDNVLTIRYLN----PERDPA 62
C A G P SW +G+ + + DRY ++ N + YLN D
Sbjct: 451 CVAGGNPTPEISWELDGK-------KIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 122
+Y+C AK+++ SA+L V L + ++ + AGE + + C P V
Sbjct: 504 LYKCIAKSKVGVAEHSAKLNVYGL--PYIRQMEKKAIVAGE--TLIVTCPVAGYPIDSIV 559
Query: 123 WKKDGNIIGSGGRRKIFENGNLLISPVSRD-DSGIYSCTATNVHGMDESKGRL----IVL 177
W++D + ++K+F NG L+I V R+ D Y+C A N G ++G L +VL
Sbjct: 560 WERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYS-ARGSLEVQVMVL 618
Query: 178 HG--PSYYEQLPPKITIAAHRNLQLRCSAHTEEL-LDVAYIWTHNGVRIGNMDLNELETP 234
P +E+ P ++ + L L CS +L L++ WT +G I DL + T
Sbjct: 619 PRIIPFAFEEGPAQV----GQYLTLHCSVPGGDLPLNID--WTLDGQAISE-DLG-ITTS 670
Query: 235 NINIDGGLLEITNASFADAGEYECVVKSTVG 265
+ G +L I + AG + C ++ G
Sbjct: 671 RVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 95/229 (41%), Gaps = 35/229 (15%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQL--KTRYSSAQLRVLTLKPSFKKRP-------LESETY 100
L IR + PE YQCR K++L +TR S+ + R++ +P P + +TY
Sbjct: 201 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTY 260
Query: 101 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-------GNLLISPVSRDD 153
+G + + C + P P F W K I G+ ++ + N G L+I +D
Sbjct: 261 SGS-STMALLCPAQGYPVPVFRWYK--FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVED 317
Query: 154 SGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 213
SG Y C N G ES ++ + P + PP T+ R C + V+
Sbjct: 318 SGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 376
Query: 214 YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 262
W +G IG+ + +L I + D G Y+C V++
Sbjct: 377 --WMKDGKAIGHSE-------------SVLRIESVKKEDKGMYQCFVRN 410
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 15/165 (9%)
Query: 7 LTWTCEAFG--VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
LT C G +P + W +G+ + SE L + R + +VLTI + +
Sbjct: 637 LTLHCSVPGGDLP-LNIDWTLDGQAI-SEDLGIT-TSRVGRRGSVLTIEAVEASH-AGNF 692
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
C A+N + + L V + P + P ++ +G + + C + PKP+ WK
Sbjct: 693 TCHARNLAGHQQFTTPLNVY-VPPRWILEP--TDKAFAQGSDAKVECKADGFPKPQVTWK 749
Query: 125 KD-GNIIGSGGRRKIFEN-----GNLLISPVSRDDSGIYSCTATN 163
K G+ G K +N G L + + + + G Y C A N
Sbjct: 750 KAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAIN 794
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 134 GRRKIFENGNLLISPVSRDDS-GIYSC-TATNVHG---MDESKGRLIVLHGPSYYEQLPP 188
G+ + +G L I V +D Y C T + G + +KGRL++ S P
Sbjct: 191 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS---SAVP 247
Query: 189 KITIAAHRNLQLRCSAHTEELLDVA----------YIWTHNGVRIGNMDLNELETPNINI 238
K+ A +++ + T LL A Y + R + LN+ +
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND----RVKQ 303
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 272
G L I +A D+G+Y CVV ++VG S +T
Sbjct: 304 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 337
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 111/272 (40%), Gaps = 27/272 (9%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
++ C+A G P +W + G+ +NS+ + D VL I+ L RD +Y+C
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES--AGAVLRIQPLRTPRDENVYECV 82
Query: 68 AKNQLKTRYSSAQLRVL---TLKPSFKKRPLESETYAGEGG-NVTIFCNPEAAPKPKFVW 123
A+N + A+L VL L F + + E T+ C P P+ W
Sbjct: 83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW 142
Query: 124 KKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI---VL 177
KD + S GR K +G L I D G Y C ATN G+ S + V
Sbjct: 143 FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ 202
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
+ + LP I N+ + C A + V ++ G DL TP +
Sbjct: 203 NVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ-------GAEDL----TPEDD 251
Query: 238 IDGG--LLEITNASFADAGEYECVVKSTVGKI 267
+ G +LE+T+ D+ Y CV S++G I
Sbjct: 252 MPVGRNVLELTDVK--DSANYTCVAMSSLGVI 281
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 75/197 (38%), Gaps = 34/197 (17%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN--- 143
P F K P + GG + C PKP+ W K G + S I F+
Sbjct: 7 PRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 144 LLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP---PKITIAAH---- 195
L I P+ + D +Y C A N G +L VL +QLP P I +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLR----EDQLPSGFPNIDMGPQLKVV 120
Query: 196 ---RNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNA 248
R + C+A D W + + + N + +L + G L+I ++
Sbjct: 121 ERTRTATMLCAASGNP--DPEITWFKDFLPVDPSASNGRIKQLRS-------GALQIESS 171
Query: 249 SFADAGEYECVVKSTVG 265
D G+YECV ++ G
Sbjct: 172 EETDQGKYECVATNSAG 188
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 101 AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159
A +G V + C P P +W++ DG I RR NG L I ++D+G Y C
Sbjct: 216 AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK-SNGILEIPNFQQEDAGSYEC 274
Query: 160 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 219
A N G + +KG+L P++ Q+ I +A ++ C A+ Y W N
Sbjct: 275 VAENSRGKNVAKGQLTFYAQPNWV-QIINDIHVAMEESVFWECKANGRP--KPTYRWLKN 331
Query: 220 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267
G + D I I+ G L IT + +DAG Y+CV ++ G I
Sbjct: 332 GDPLLTRD-------RIQIEQGTLNITIVNLSDAGMYQCVAENKHGVI 372
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 111/277 (40%), Gaps = 30/277 (10%)
Query: 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
+ + +CE G P W LN + + RY + D L I N +D
Sbjct: 22 EKKVKLSCEVKGNPKPHIRW-----KLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGT 76
Query: 64 YQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKF 121
YQC A N T S A+L+ L+ +FK R S G + + C P + + +
Sbjct: 77 YQCIATNSFGTIVSREAKLQFAYLE-NFKTR-TRSTVSVRRGQGMVLLCGPPPHSGELSY 134
Query: 122 VWKKDGNIIGSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVLH 178
W + RR + E GNL I+ V + D G Y+C TN + G ++L
Sbjct: 135 AWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILR 194
Query: 179 GPSYYEQLPPKI------TIAAHRN--LQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLN 229
+ PKI T+ A + ++L C A + + +W +G I
Sbjct: 195 NDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTI--LWRRADGKPIA----- 247
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266
+ G+LEI N DAG YECV +++ GK
Sbjct: 248 --RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGK 282
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 11 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 70
C A G P T W R ++ P+ + R + +L I E D Y+C A+N
Sbjct: 226 CFALGNPVPTILWRR------ADGKPIARKARRHKSNGILEIPNFQQE-DAGSYECVAEN 278
Query: 71 QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII 130
+ QL +P++ + + ++ + +V C PKP + W K+G+ +
Sbjct: 279 SRGKNVAKGQL-TFYAQPNWVQ--IINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 335
Query: 131 GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+ R +I E G L I+ V+ D+G+Y C A N HG+ S L V+
Sbjct: 336 LTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 381
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
W C+A G P TY W +NG+ PL +DR I+ L I +N D MYQC A
Sbjct: 314 WECKANGRPKPTYRWLKNGD-------PLLTRDRIQIEQGTLNITIVNLS-DAGMYQCVA 365
Query: 69 KNQLKTRYSSAQLRVLT 85
+N+ +SSA+L V+
Sbjct: 366 ENKHGVIFSSAELSVIA 382
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 83 VLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKIFE 140
V +PS PL+SE V + C + PKP WK +G IG R + +
Sbjct: 6 VFVQEPSHVMFPLDSEE-----KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 60
Query: 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQ 199
L+ +P D+G Y C ATN G S+ +L + ++ + +++ + +
Sbjct: 61 GSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV 120
Query: 200 LRCS--AHTEELLDVAYIWTHNGVRIGNMDLNELETPN-------INIDGGLLEITNASF 250
L C H+ EL +Y W N E P+ ++ + G L I
Sbjct: 121 LLCGPPPHSGEL---SYAWIFN------------EYPSYQDNRRFVSQETGNLYIAKVEK 165
Query: 251 ADAGEYECVVKSTV 264
+D G Y CVV +TV
Sbjct: 166 SDVGNYTCVVTNTV 179
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 101 AGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159
A +G V + C P P +W++ DG I RR NG L I ++D+G Y C
Sbjct: 217 AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK-SNGILEIPNFQQEDAGSYEC 275
Query: 160 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 219
A N G + +KG+L P++ Q+ I +A ++ C A+ Y W N
Sbjct: 276 VAENSRGKNVAKGQLTFYAQPNWV-QIINDIHVAMEESVFWECKANGRP--KPTYRWLKN 332
Query: 220 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267
G + D I I+ G L IT + +DAG Y+CV ++ G I
Sbjct: 333 GDPLLTRD-------RIQIEQGTLNITIVNLSDAGMYQCVAENKHGVI 373
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 111/277 (40%), Gaps = 30/277 (10%)
Query: 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
+ + +CE G P W LN + + RY + D L I N +D
Sbjct: 23 EKKVKLSCEVKGNPKPHIRW-----KLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGT 77
Query: 64 YQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKF 121
YQC A N T S A+L+ L+ +FK R S G + + C P + + +
Sbjct: 78 YQCIATNSFGTIVSREAKLQFAYLE-NFKTR-TRSTVSVRRGQGMVLLCGPPPHSGELSY 135
Query: 122 VWKKDGNIIGSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVLH 178
W + RR + E GNL I+ V + D G Y+C TN + G ++L
Sbjct: 136 AWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILR 195
Query: 179 GPSYYEQLPPKI------TIAAHRN--LQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLN 229
+ PKI T+ A + ++L C A + + +W +G I
Sbjct: 196 NDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTI--LWRRADGKPIA----- 248
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266
+ G+LEI N DAG YECV +++ GK
Sbjct: 249 --RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGK 283
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 11 CEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 70
C A G P T W R ++ P+ + R + +L I E D Y+C A+N
Sbjct: 227 CFALGNPVPTILWRR------ADGKPIARKARRHKSNGILEIPNFQQE-DAGSYECVAEN 279
Query: 71 QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII 130
+ QL +P++ + + ++ + +V C PKP + W K+G+ +
Sbjct: 280 SRGKNVAKGQL-TFYAQPNWVQ--IINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 336
Query: 131 GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+ R +I E G L I+ V+ D+G+Y C A N HG+ S L V+
Sbjct: 337 LTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
W C+A G P TY W +NG+ PL +DR I+ L I +N D MYQC A
Sbjct: 315 WECKANGRPKPTYRWLKNGD-------PLLTRDRIQIEQGTLNITIVNLS-DAGMYQCVA 366
Query: 69 KNQLKTRYSSAQLRVLT 85
+N+ +SSA+L V+
Sbjct: 367 ENKHGVIFSSAELSVIA 383
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 83 VLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKIFE 140
V +PS PL+SE V + C + PKP WK +G IG R + +
Sbjct: 7 VFVQEPSHVMFPLDSEEK-----KVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQ 199
L+ +P D+G Y C ATN G S+ +L + ++ + +++ + +
Sbjct: 62 GSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV 121
Query: 200 LRCS--AHTEELLDVAYIWTHNGVRIGNMDLNELETPN-------INIDGGLLEITNASF 250
L C H+ EL +Y W N E P+ ++ + G L I
Sbjct: 122 LLCGPPPHSGEL---SYAWIFN------------EYPSYQDNRRFVSQETGNLYIAKVEK 166
Query: 251 ADAGEYECVVKSTV 264
+D G Y CVV +TV
Sbjct: 167 SDVGNYTCVVTNTV 180
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 70/165 (42%), Gaps = 9/165 (5%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE-RDPAMYQC 66
T+ C P SW RN L+ L D RY I++N + L+ E D +Y C
Sbjct: 26 TFMCAVESYPQPEISWTRNKILIK-----LFDT-RYSIRENGQLLTILSVEDSDDGIYCC 79
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
A N + S + +KP + P+ + EG + C PKP W K
Sbjct: 80 TANNGVGGAVESCGALQVKMKPKITRPPINVKII--EGLKAVLPCTTMGNPKPSVSWIKG 137
Query: 127 GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
+ + R + E+G+L I V ++D+G Y C A N G SK
Sbjct: 138 DSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 108 TIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENGNLL-ISPVSRDDSGIYSCTATN-V 164
T C E+ P+P+ W ++ +I R I ENG LL I V D GIY CTA N V
Sbjct: 26 TFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGV 85
Query: 165 HGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 224
G ES G L V P P + I L C+ V++I + +R
Sbjct: 86 GGAVESCGALQVKMKPKITRP-PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-E 143
Query: 225 NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 270
N + LE+ G L I N DAG+Y CV K+++G +K
Sbjct: 144 NSRIAVLES-------GSLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 114/285 (40%), Gaps = 30/285 (10%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLN---P 57
+D + ++ CEA G P ++ W RN N P R + L I + + P
Sbjct: 29 VDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRR---RSGTLVIDFRSGGRP 85
Query: 58 ERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA- 116
E YQC A+N+ T S+ ++ P + K L+ EG +T+ CNP
Sbjct: 86 EEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDP-VVVQEGAPLTLQCNPPPGL 144
Query: 117 PKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGI-YSCTATN--VHGMDESKG 172
P P W I R NG+L S V D YSC A H + +
Sbjct: 145 PSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNP 204
Query: 173 -RLIVLHGPSYYEQLP----PKITIAAHR-----NLQLRCSAHTEELLDVAYIWTHNGVR 222
L VL E+ P P+ T ++ +L L C A D+A W G
Sbjct: 205 FTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIA--WYKKG-- 260
Query: 223 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267
G++ ++ + N N L ITN S D+GEY C+ + +G I
Sbjct: 261 -GDLPSDKAKFENFN---KALRITNVSEEDSGEYFCLASNKMGSI 301
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 81/207 (39%), Gaps = 21/207 (10%)
Query: 64 YQCRAKNQLK---TRYSSAQLRVLTLK------PSFK-KRPLESETYAGEGGNVTIFCNP 113
Y C A+ + + L+VLT + PSF + S G ++ + C
Sbjct: 187 YSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA 246
Query: 114 EAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTATNVHGMDESK 171
P P W K G + S + FEN N L I+ VS +DSG Y C A+N G
Sbjct: 247 SGVPTPDIAWYKKGGDLPSDKAK--FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHT 304
Query: 172 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 231
+ V P Y+ P + +A + +L C A+ V W NG + + N
Sbjct: 305 ISVRVKAAP-YWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ--WMVNGEPLQSAPPN-- 359
Query: 232 ETPNINIDGGLLEITNASFADAGEYEC 258
PN + G + + + Y+C
Sbjct: 360 --PNREVAGDTIIFRDTQISSRAVYQC 384
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 103/262 (39%), Gaps = 30/262 (11%)
Query: 17 PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE-RDPAMYQCRAKNQLK-- 73
P ++Y W LLN + R F+ + E D Y C A + +
Sbjct: 130 PALSYRW-----LLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFI 184
Query: 74 TRYSSAQLRVLTLK--------PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
T+ ++ L+L PS K + ++TYA G VT+ C P P+ W+K
Sbjct: 185 TKSVFSKFSQLSLAAEDARQYAPSIKAK-FPADTYALTGQMVTLECFAFGNPVPQIKWRK 243
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ 185
+ GS + + L I V +D G Y C A N+ G D +GR+I+ P + +
Sbjct: 244 ---LDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV 300
Query: 186 LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI 245
+ A LR S A W +G + + + I + GG L
Sbjct: 301 I---TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN-------RIEVSGGELRF 350
Query: 246 TNASFADAGEYECVVKSTVGKI 267
+ D+G Y+CV ++ G +
Sbjct: 351 SKLVLEDSGMYQCVAENKHGTV 372
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 104/278 (37%), Gaps = 38/278 (13%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+T TC A P TY W NG L + RY + L I +D YQC
Sbjct: 25 VTLTCRARANPPATYRWKMNG-----TELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79
Query: 67 RAKNQLKT---RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFV 122
A N T R +S + L + ++ P++ EG V C+P P +
Sbjct: 80 VATNARGTVVSREASLRFGFLQEFSAEERDPVK----ITEGWGVMFTCSPPPHYPALSYR 135
Query: 123 W--KKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATN----VHGMDESKGRLI 175
W + N I + GRR + + GNL I+ D G YSC AT+ + SK +
Sbjct: 136 WLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQL 195
Query: 176 VL-------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 228
L + PS + P + + L C A + + + L
Sbjct: 196 SLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW-----------RKL 244
Query: 229 NELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266
+ +T LL I N F D G YEC ++ G+
Sbjct: 245 DGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGR 282
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+T C AFG P W + L S+T ++ + +L I+ ++ E D Y+C
Sbjct: 225 VTLECFAFGNPVPQIKWRK---LDGSQT------SKWLSSEPLLHIQNVDFE-DEGTYEC 274
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
A+N +K R + ++ +P + + ++T A G ++ C P+P W +D
Sbjct: 275 EAEN-IKGRDTYQGRIIIHAQPDWLD--VITDTEADIGSDLRWSCVASGKPRPAVRWLRD 331
Query: 127 GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
G + S R ++ G L S + +DSG+Y C A N HG + L V
Sbjct: 332 GQPLASQNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDP 61
D +DL W+C A G P W R+G+ PL Q+R + L L E D
Sbjct: 307 DIGSDLRWSCVASGKPRPAVRWLRDGQ-------PLASQNRIEVSGGELRFSKLVLE-DS 358
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
MYQC A+N+ T Y+SA+L V
Sbjct: 359 GMYQCVAENKHGTVYASAELTV 380
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 79/200 (39%), Gaps = 38/200 (19%)
Query: 88 PSFKKRPLESETYAGEGG---NVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENGN 143
P F+++P + T EG VT+ C A P + WK +G + G R G+
Sbjct: 5 PVFEEQP--AHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD 62
Query: 144 LLIS-PVSRDDSGIYSCTATNVHGM---DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 199
L+IS PV D+G Y C ATN G E+ R L S E+ P KIT +
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKIT--EGWGVM 120
Query: 200 LRCS--AHTEELLDVAYIWTHNGVRIGNMDLNELETPN-INIDG--------GLLEITNA 248
CS H L +Y W N E PN I DG G L I
Sbjct: 121 FTCSPPPHYPAL---SYRWLLN------------EFPNFIPADGRRFVSQTTGNLYIAKT 165
Query: 249 SFADAGEYECVVKSTVGKIS 268
+D G Y C S + I+
Sbjct: 166 EASDLGNYSCFATSHIDFIT 185
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQL--KTRYSSAQLRVLTLK---------PSFKKRPLESE 98
L IR + PE YQCR K++L +TR S+ + R++ + P+ ++PLE
Sbjct: 172 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELM 231
Query: 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-------GNLLISPVSR 151
+++ C + P P F W K I G+ ++ + N G L+I
Sbjct: 232 V----AHTISLLCPAQGFPAPSFRWYK--FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV 285
Query: 152 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 211
+DSG Y C N G ES ++ + P + PP T+ R C +
Sbjct: 286 EDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 344
Query: 212 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 261
V+ W +G IG+ + +L I + D G Y+C V+
Sbjct: 345 VS--WMKDGKAIGHSE-------------SVLRIESVKKEDKGMYQCFVR 379
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
+TC+ G P T SW ++G+ + ++VL I + E D MYQC
Sbjct: 332 VFTCQYTGNPIKTVSWMKDGKAIGH-------------SESVLRIESVKKE-DKGMYQCF 377
Query: 68 AKNQLKTRYSSAQLRV 83
+N ++ +SA+L++
Sbjct: 378 VRNDRESAEASAELKL 393
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 26/175 (14%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGE-LLNSETLPLEDQDR-----YFIQDNVLTIRYLNPERD 60
++ C A G P ++ W++ E + + L D+ + I+D V+ D
Sbjct: 236 ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV--------ED 287
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF-CNPEAAPKP 119
Y C N + VLT+ + ++ T + G +F C P
Sbjct: 288 SGKYLCVVNNSVGGESVET---VLTVTAPLSAK-IDPPTQTVDFGRPAVFTCQYTGNPIK 343
Query: 120 KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174
W KDG IG L I V ++D G+Y C N E+ L
Sbjct: 344 TVSWMKDGKAIG-------HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 391
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 23/154 (14%)
Query: 134 GRRKIFENGNLLISPVSRDDS-GIYSC-TATNVHG---MDESKGRLIVLHGPSYYEQLPP 188
G+ + +G L I V +D Y C T + G + +KGRL++ S P
Sbjct: 162 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS---SSAP 218
Query: 189 KITIAAHRNLQLRCSAHTEELLDVA----------YIWTHNGVRIGNMDLNELETPNINI 238
+ + L+L AHT LL A Y + R + LN+ +
Sbjct: 219 RTPALVQKPLELMV-AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLND----RVKQ 273
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 272
G L I +A D+G+Y CVV ++VG S +T
Sbjct: 274 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 307
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQL--KTRYSSAQLRVLTLK---------PSFKKRPLESE 98
L IR + PE YQCR K++L +TR S+ + R++ + P+ ++PLE
Sbjct: 166 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELM 225
Query: 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-------GNLLISPVSR 151
+++ C + P P F W K I G+ ++ + N G L+I
Sbjct: 226 V----AHTISLLCPAQGFPAPSFRWYK--FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV 279
Query: 152 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 211
+DSG Y C N G ES ++ + P + PP T+ R C +
Sbjct: 280 EDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 338
Query: 212 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 261
V+ W +G IG+ + +L I + D G Y+C V+
Sbjct: 339 VS--WMKDGKAIGHSE-------------SVLRIESVKKEDKGMYQCFVR 373
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
+TC+ G P T SW ++G+ + ++VL I + E D MYQC
Sbjct: 326 VFTCQYTGNPIKTVSWMKDGKAIGH-------------SESVLRIESVKKE-DKGMYQCF 371
Query: 68 AKNQLKTRYSSAQLRV 83
+N ++ +SA+L++
Sbjct: 372 VRNDRESAEASAELKL 387
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 26/175 (14%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGE-LLNSETLPLEDQDR-----YFIQDNVLTIRYLNPERD 60
++ C A G P ++ W++ E + + L D+ + I+D V+ D
Sbjct: 230 ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV--------ED 281
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF-CNPEAAPKP 119
Y C N + VLT+ + ++ T + G +F C P
Sbjct: 282 SGKYLCVVNNSVGGESVET---VLTVTAPLSAK-IDPPTQTVDFGRPAVFTCQYTGNPIK 337
Query: 120 KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174
W KDG IG L I V ++D G+Y C N E+ L
Sbjct: 338 TVSWMKDGKAIG-------HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 23/154 (14%)
Query: 134 GRRKIFENGNLLISPVSRDDS-GIYSC-TATNVHG---MDESKGRLIVLHGPSYYEQLPP 188
G+ + +G L I V +D Y C T + G + +KGRL++ S P
Sbjct: 156 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS---SSAP 212
Query: 189 KITIAAHRNLQLRCSAHTEELLDVA----------YIWTHNGVRIGNMDLNELETPNINI 238
+ + L+L AHT LL A Y + R + LN+ +
Sbjct: 213 RTPALVQKPLELMV-AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLND----RVKQ 267
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTT 272
G L I +A D+G+Y CVV ++VG S +T
Sbjct: 268 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 301
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 80/172 (46%), Gaps = 16/172 (9%)
Query: 1 MDNQADLTWTCEAFGVPDVTY-SWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLN--- 56
M D+T +G + Y ++F+NG+ +N +DR + R L
Sbjct: 223 MAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNP-----EDRITRHNRTSGKRLLFKTT 277
Query: 57 -PERDPAMYQCRAKNQL-KTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPE 114
PE D +Y C N + K + S +L V++ P ++++P E +G +VTI C
Sbjct: 278 LPE-DEGVYTCEVDNGVGKPQKHSLKLTVVSA-PKYEQKP-EKVIVVKQGQDVTIPCKVT 334
Query: 115 AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
P P VW + + SGGR + ++G L+I V D G Y C ATN HG
Sbjct: 335 GLPAPNVVWSHNAKPL-SGGRATVTDSG-LVIKGVKNGDKGYYGCRATNEHG 384
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 25/165 (15%)
Query: 19 VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE-RDPAMYQCRAKNQLKTRYS 77
V YSW ++G+ N + + ++ + ++ +L P+ D YQC A+ T
Sbjct: 37 VKYSWKKDGKSYNWQ------EHNAALRKDEGSLVFLRPQASDEGHYQCFAE----TPAG 86
Query: 78 SAQLRVLTLKPSFK-KRPLES-ETYAGEGGNVTIFCN-PEAAPKPKFVWKK-----DGNI 129
A RV++ + ++ P ++ E EG + C P A PKP WKK D N
Sbjct: 87 VASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNA 146
Query: 130 IGSGGRRKIFE--NGNLLISPVSRDD-SGIYS--CTATNVHGMDE 169
+ R+I +GNL + V+++D S IY CTA N +DE
Sbjct: 147 DVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNA-AVDE 190
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 63/171 (36%), Gaps = 21/171 (12%)
Query: 97 SETYAGEGGNVT-IFC----NPEAAPKPKFVWKKD--GNIIGSGGRRKIFENGNLLISPV 149
S+ + G+VT I+C NP P F KD GN R LL
Sbjct: 219 SKDMMAKAGDVTMIYCMYGSNPMGYPN-YFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 277
Query: 150 SRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAH-RNLQLRCSAHTE 207
+D G+Y+C N G + +L V+ P YEQ P K+ + +++ + C
Sbjct: 278 LPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPK-YEQKPEKVIVVKQGQDVTIPCKVTGL 336
Query: 208 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
+V +W+HN L + L I D G Y C
Sbjct: 337 PAPNV--VWSHNA--------KPLSGGRATVTDSGLVIKGVKNGDKGYYGC 377
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 16/177 (9%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFEN-GNL 144
P F +P+ + GE G T C+ K W KD I GG K + EN L
Sbjct: 6 PFFDLKPVSVDLALGESG--TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 204
+ V++ D+G Y+C A+NV G D +L V P + ++L P + + + C
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 205 HTEELLDVAYIWTHNGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
+ V +W + I ++ +E+ + LE+ N S D+G+Y C
Sbjct: 124 GGSPEIKV--LWYKDETEIQESSKFRMSFVESVAV------LEMYNLSVEDSGDYTC 172
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 104/266 (39%), Gaps = 25/266 (9%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-DPAMYQC 66
T+ C G + +W ++ N E P + ++ N T+ L + D Y C
Sbjct: 24 TFKCHVTGTAPIKITWAKD----NREIRPGGNYKMTLVE-NTATLTVLKVTKGDAGQYTC 78
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
A N SAQL V P F K+ LE + + C +P+ K +W KD
Sbjct: 79 YASNVAGKDSCSAQLGVQE-PPRFIKK-LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
Query: 127 GNII--GSGGRRKIFENGNLL-ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
I S R E+ +L + +S +DSG Y+C A N G S L V P +
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR 196
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN----MDLNELETPNINID 239
++ P T+ ++ L C V++ +R G M N L +
Sbjct: 197 KKPHPVETLKG-ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS------ 249
Query: 240 GGLLEITNASFADAGEYECVVKSTVG 265
+ I N AD GEY+C + VG
Sbjct: 250 ---IHILNVDSADIGEYQCKASNDVG 272
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 5 ADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLT-IRYLNPER-DPA 62
AD+ CE G P SW ++ L S + + +N LT I LN + D
Sbjct: 208 ADVHLECELQGTPPFQVSWHKDKRELRS------GKKYKIMSENFLTSIHILNVDSADIG 261
Query: 63 MYQCRAKNQL 72
YQC+A N +
Sbjct: 262 EYQCKASNDV 271
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E + +A F C P+P W K+G GG + + ++++ V
Sbjct: 21 MEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV 80
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 205
D G Y+C N +G +L V+ H P LP T+A N++ C +
Sbjct: 81 VPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY 140
Query: 206 TEELLDVAYIWTH---NGVRIGNMDL---NELETPNINI---DGGLLEITNASFADAGEY 256
++ + ++ H NG +IG +L L+T +N + +L + N SF DAGEY
Sbjct: 141 SDPQPHIQWL-KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 199
Query: 257 ECVVKSTVG 265
C+ +++G
Sbjct: 200 TCLAGNSIG 208
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 74/196 (37%), Gaps = 35/196 (17%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY----FIQDNVLTIRYLNPERDPA 62
+ + C + G P T W +NG+ + + RY I D+V+ D
Sbjct: 34 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVV-------PSDKG 86
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAP 117
Y C +N+ + + QL V+ P RP L + G NV C + P
Sbjct: 87 NYTCIVENEYGSINHTYQLDVVERSP---HRPILQAGLPANKTVALGSNVEFMCKVYSDP 143
Query: 118 KPKFVWKK----DGNIIG------------SGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
+P W K +G+ IG +G E L + VS +D+G Y+C A
Sbjct: 144 QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLA 203
Query: 162 TNVHGMDESKGRLIVL 177
N G+ L VL
Sbjct: 204 GNSIGLSHHSAWLTVL 219
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E + +A F C P+P W K+G GG + + ++++ V
Sbjct: 22 MEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV 81
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 205
D G Y+C N +G +L V+ H P LP T+A N++ C +
Sbjct: 82 VPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY 141
Query: 206 TEELLDVAYIWTH---NGVRIGNMDL---NELETPNINI---DGGLLEITNASFADAGEY 256
++ + ++ H NG +IG +L L+T +N + +L + N SF DAGEY
Sbjct: 142 SDPQPHIQWL-KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 200
Query: 257 ECVVKSTVG 265
C+ +++G
Sbjct: 201 TCLAGNSIG 209
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 74/196 (37%), Gaps = 35/196 (17%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY----FIQDNVLTIRYLNPERDPA 62
+ + C + G P T W +NG+ + + RY I D+V+ D
Sbjct: 35 VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVP-------SDKG 87
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAP 117
Y C +N+ + + QL V+ P RP L + G NV C + P
Sbjct: 88 NYTCIVENEYGSINHTYQLDVVERSP---HRPILQAGLPANKTVALGSNVEFMCKVYSDP 144
Query: 118 KPKFVWKK----DGNIIG------------SGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
+P W K +G+ IG +G E L + VS +D+G Y+C A
Sbjct: 145 QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLA 204
Query: 162 TNVHGMDESKGRLIVL 177
N G+ L VL
Sbjct: 205 GNSIGLSHHSAWLTVL 220
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
++ C+A G P +W + G+ +NS+ + D VL I+ L RD +Y+C
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES--AGAVLRIQPLRTPRDENIYECV 82
Query: 68 AKNQLKTRYSSAQLRVL---TLKPSFKKRPLESETYAGEGG-NVTIFCNPEAAPKPKFVW 123
A+N A+L VL L P F + + E T+ C P P+ W
Sbjct: 83 AQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW 142
Query: 124 KKDGNIIG---SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM 167
KD + S GR K +G L I D G Y C A+N G+
Sbjct: 143 FKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECVASNSAGV 189
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 34/197 (17%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN--- 143
P F K+P++ GG + C PKP+ W K G + S I F+
Sbjct: 7 PVFIKKPVDQ--IGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 144 LLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI----------TI 192
L I P+ + D IY C A N HG +L VL +QLPP +
Sbjct: 65 LRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLR----EDQLPPGFPNIDMGPQLKVV 120
Query: 193 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNA 248
R + C+A D W + + + N + +L + G L+I ++
Sbjct: 121 ERTRTATMLCAASGNP--DPEITWFKDFLPVDPSTSNGRIKQLRS-------GGLQIESS 171
Query: 249 SFADAGEYECVVKSTVG 265
D G+YECV ++ G
Sbjct: 172 EETDQGKYECVASNSAG 188
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 28/83 (33%)
Query: 8 TWTCEAFGVPDVTYSWFR----------NGEL--LNSETLPLEDQDRYFIQDNVLTIRYL 55
T C A G PD +WF+ NG + L S L +E +
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSE-------------- 172
Query: 56 NPERDPAMYQCRAKNQLKTRYSS 78
E D Y+C A N RYSS
Sbjct: 173 --ETDQGKYECVASNSAGVRYSS 193
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 16/177 (9%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRK--IFEN-GNL 144
P F +P+ + GE G T C+ K W KD I GG K + EN L
Sbjct: 6 PFFDLKPVSVDLALGESG--TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 204
+ V++ D+G Y+C A+NV G D +L V P + ++L P + + + C
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 205 HTEELLDVAYIWTHNGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
+ V +W + I ++ +E+ + LE+ N S D+G+Y C
Sbjct: 124 GGSPEIKV--LWYKDETEIQESSKFRMSFVESVAV------LEMYNLSVEDSGDYTC 172
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 104/266 (39%), Gaps = 25/266 (9%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-DPAMYQC 66
T+ C G + +W ++ N E P + ++ N T+ L + D Y C
Sbjct: 24 TFKCHVTGTAPIKITWAKD----NREIRPGGNYKMTLVE-NTATLTVLKVTKGDAGQYTC 78
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
A N SAQL V P F K+ LE + + C +P+ K +W KD
Sbjct: 79 YASNVAGKDSCSAQLGV-QAPPRFIKK-LEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD 136
Query: 127 GNII--GSGGRRKIFENGNLL-ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
I S R E+ +L + +S +DSG Y+C A N G S L V P +
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFR 196
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN----MDLNELETPNINID 239
++ P T+ ++ L C V++ +R G M N L +
Sbjct: 197 KKPHPVETLKG-ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS------ 249
Query: 240 GGLLEITNASFADAGEYECVVKSTVG 265
+ I N AD GEY+C + VG
Sbjct: 250 ---IHILNVDSADIGEYQCKASNDVG 272
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 5 ADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLT-IRYLNPER-DPA 62
AD+ CE G P SW ++ L S + + +N LT I LN + D
Sbjct: 208 ADVHLECELQGTPPFQVSWHKDKRELRS------GKKYKIMSENFLTSIHILNVDSADIG 261
Query: 63 MYQCRAKNQL 72
YQC+A N +
Sbjct: 262 EYQCKASNDV 271
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
++ C+A G P +W + G+ +NS+ + D VL I+ L RD +Y+C
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES--AGAVLRIQPLRTPRDENVYECV 82
Query: 68 AKNQLKTRYSSAQLRVL---TLKPSFKKRPLESETYAGEGG-NVTIFCNPEAAPKPKFVW 123
A+N + A+L VL L F + + E T+ C P P+ W
Sbjct: 83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW 142
Query: 124 KKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM 167
KD + S GR K +G L I D G Y C ATN G+
Sbjct: 143 FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGV 189
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 34/197 (17%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN--- 143
P F K P + GG + C PKP+ W K G + S I F+
Sbjct: 7 PRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 144 LLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP---------PKITIA 193
L I P+ + D +Y C A N G +L VL +QLP P++ +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLR----EDQLPSGFPNIDMGPQLKVV 120
Query: 194 AH-RNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNA 248
R + C+A D W + + + N + +L + G L+I ++
Sbjct: 121 ERTRTATMLCAASGNP--DPEITWFKDFLPVDPSASNGRIKQLRS-------GALQIESS 171
Query: 249 SFADAGEYECVVKSTVG 265
D G+YECV ++ G
Sbjct: 172 EETDQGKYECVATNSAG 188
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 28/83 (33%)
Query: 8 TWTCEAFGVPDVTYSWFR----------NGEL--LNSETLPLEDQDRYFIQDNVLTIRYL 55
T C A G PD +WF+ NG + L S L +E +
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE-------------- 172
Query: 56 NPERDPAMYQCRAKNQLKTRYSS 78
E D Y+C A N RYSS
Sbjct: 173 --ETDQGKYECVATNSAGVRYSS 193
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 19/189 (10%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E + +A F C P P W K+G GG + + ++++ V
Sbjct: 21 MEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV 80
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 205
D G Y+C N +G +L V+ H P LP T+A N++ C +
Sbjct: 81 VPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVY 140
Query: 206 TEELLDVAYIWTH---NGVRIGNMDL---NELETPNINI---DGGLLEITNASFADAGEY 256
++ + ++ H NG +IG +L L+T +N + +L + N SF DAGEY
Sbjct: 141 SDPQPHIQWL-KHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEY 199
Query: 257 ECVVKSTVG 265
C+ +++G
Sbjct: 200 TCLAGNSIG 208
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 75/196 (38%), Gaps = 35/196 (17%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY----FIQDNVLTIRYLNPERDPA 62
+ + C + G P+ T W +NG+ + + RY I D+V+ D
Sbjct: 34 VKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVV-------PSDKG 86
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAP 117
Y C +N+ + + QL V+ P RP L + G NV C + P
Sbjct: 87 NYTCIVENEYGSINHTYQLDVVERSP---HRPILQAGLPANKTVALGSNVEFMCKVYSDP 143
Query: 118 KPKFVWKK----DGNIIG------------SGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
+P W K +G+ IG +G E L + VS +D+G Y+C A
Sbjct: 144 QPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLA 203
Query: 162 TNVHGMDESKGRLIVL 177
N G+ L VL
Sbjct: 204 GNSIGLSHHSAWLTVL 219
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
++ C+A G P +W + G+ +NS+ + D VL I+ L RD +Y+C
Sbjct: 25 SFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES--AGAVLRIQPLRTPRDENVYECV 82
Query: 68 AKNQLKTRYSSAQLRVL---TLKPSFKKRPLESETYAGEGG-NVTIFCNPEAAPKPKFVW 123
A+N + A+L VL L F + + E T+ C P P+ W
Sbjct: 83 AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITW 142
Query: 124 KKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM 167
KD + S GR K +G L I D G Y C ATN G+
Sbjct: 143 FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGV 189
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 34/197 (17%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN--- 143
P F K P + GG + C PKP+ W K G + S I F+
Sbjct: 7 PRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 144 LLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP---------PKITIA 193
L I P+ + D +Y C A N G +L VL +QLP P++ +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLR----EDQLPSGFPNIDMGPQLKVV 120
Query: 194 AH-RNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNA 248
R + C+A D W + + + N + +L + G L+I ++
Sbjct: 121 ERTRTATMLCAASGNP--DPEITWFKDFLPVDPSASNGRIKQLRS-------GALQIESS 171
Query: 249 SFADAGEYECVVKSTVG 265
D G+YECV ++ G
Sbjct: 172 EETDQGKYECVATNSAG 188
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 28/83 (33%)
Query: 8 TWTCEAFGVPDVTYSWFR----------NGEL--LNSETLPLEDQDRYFIQDNVLTIRYL 55
T C A G PD +WF+ NG + L S L +E +
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE-------------- 172
Query: 56 NPERDPAMYQCRAKNQLKTRYSS 78
E D Y+C A N RYSS
Sbjct: 173 --ETDQGKYECVATNSAGVRYSS 193
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 95/228 (41%), Gaps = 33/228 (14%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQL--KTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNV 107
L IR + PE YQCR K++L +TR S+ + R++ +P RP + + +V
Sbjct: 168 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDV 227
Query: 108 ------TIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-------GNLLISPVSRDDS 154
++ C ++ P P F W K I G+ ++ + N G L+I +DS
Sbjct: 228 ELASSYSLLCMAQSYPTPSFRWYK--FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 285
Query: 155 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 214
G Y C N G ES ++ + P + PP T+ R C + V+
Sbjct: 286 GKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS- 343
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 262
W +G IG+ + +L I + D G Y+C V++
Sbjct: 344 -WMKDGKAIGHSE-------------SVLRIESVKKEDKGMYQCFVRN 377
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
+TC+ G P T SW ++G+ + ++VL I + E D MYQC
Sbjct: 329 VFTCQYTGNPIKTVSWMKDGKAIGH-------------SESVLRIESVKKE-DKGMYQCF 374
Query: 68 AKNQLKTRYSSAQLRV 83
+N ++ +SA+L++
Sbjct: 375 VRNDRESAEASAELKL 390
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 59/171 (34%), Gaps = 26/171 (15%)
Query: 11 CEAFGVPDVTYSWFRNGE-LLNSETLPLEDQDR-----YFIQDNVLTIRYLNPERDPAMY 64
C A P ++ W++ E + + L D+ + I+D V+ D Y
Sbjct: 237 CMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV--------EDSGKY 288
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF-CNPEAAPKPKFVW 123
C N + VLT+ + ++ T + G +F C P W
Sbjct: 289 LCVVNNSVGGESVET---VLTVTAPLSAK-IDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 344
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174
KDG IG L I V ++D G+Y C N E+ L
Sbjct: 345 MKDGKAIG-------HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 388
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 92/236 (38%), Gaps = 36/236 (15%)
Query: 63 MYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESET---YAGEGGNVTIFCN-PEAAP 117
+Y C A+NQ + S +R + ++ ESE Y G +V + C P
Sbjct: 79 VYACLARNQFGSIISRDVHVRAVVIQS------YESEADNEYVIRGNSVVMKCEIPSYVA 132
Query: 118 KPKFV--WKKD-------GNIIGSGGRRKIFENGNLLISPVSRDDS-GIYSC-TATNVHG 166
FV W N + G+ + +G L I V +D Y C T + G
Sbjct: 133 DFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTG 192
Query: 167 ---MDESKGRLIVLHG-PSYYEQLPPK-----ITIAAHRNLQLRCSAHTEELLDVA-YIW 216
+ +KGRL++ S ++ P+ I + + L C A + Y +
Sbjct: 193 ETRLSATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKF 252
Query: 217 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 272
R + LN+ + G L I +A D+G+Y CVV ++VG S +T
Sbjct: 253 IEGTTRKQAVVLND----RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 304
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 144/383 (37%), Gaps = 36/383 (9%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSG-----GRRKI---FENGNLLISPVSRD 152
E G VT+ C+ E P P+ WK+ DG G GR ++ + +L I V
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 153 DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN-LQLRCSAHTEELLD 211
DSG Y C A + G + L + + P + I + N + + C +
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDIEYAPKFISN--QTIYYSWEGNPINISCDVKSNPPAS 131
Query: 212 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 271
+ W + + + + L+T + +LEI S D G Y C + +G +
Sbjct: 132 IH--WRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEY 188
Query: 272 TXXXXXXXXXXXXXXXXXXHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEH 330
+T+A + + ++G PI HY++ + + W V H
Sbjct: 189 ILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH 248
Query: 331 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 390
G + + N L P +TYE +V A N G G+ S P +P
Sbjct: 249 ----------GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS 298
Query: 391 SRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVV 450
LSI+ ++ AP + Y + +R K D E Q K GN ++
Sbjct: 299 IHGQPSSGKSFKLSIT----KQDDGGAPILEYIVKYRSK-DKEDQWLEKKVQGNKDHIIL 353
Query: 451 RIPSEFYYTE-YEVKVQAINDVG 472
+T YEV++ A N +G
Sbjct: 354 E---HLQWTMGYEVQITAANRLG 373
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 8 TWTCEA----FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
T T EA F VP+V SWFR+G+++++ TLP Q + LTI + + +
Sbjct: 22 TATFEAHISGFPVPEV--SWFRDGQVISTSTLP-GVQISFSDGRAKLTIPAVT-KANSGR 77
Query: 64 YQCRAKNQLKTRYSSAQLRVL--TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y +A N S+A+L V T P+F +R L+S T +G V + P P
Sbjct: 78 YSLKATNGSGQATSTAELLVKAETAPPNFVQR-LQSMTVR-QGSQVRLQVRVTGIPTPVV 135
Query: 122 VWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ +DG I S +I + G+ LLI+ +DSG YS ATN G S L+V
Sbjct: 136 KFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 22/196 (11%)
Query: 85 TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFEN 141
T P+F + PL+S EG T + P P+ W +DG +I + G + F +
Sbjct: 3 TQAPTFTQ-PLQSVVVL-EGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 142 G--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV---LHGPSYYEQLPPKITIAAHR 196
G L I V++ +SG YS ATN G S L+V P++ ++L ++ +
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ---SMTVRQ 117
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRI-GNMDLNELETPNINIDGGL--LEITNASFADA 253
Q+R + + +G I ++D I+ +G L L I A D+
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDF------QISQEGDLYSLLIAEAYPEDS 171
Query: 254 GEYECVVKSTVGKIST 269
G Y ++VG+ ++
Sbjct: 172 GTYSVNATNSVGRATS 187
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 15/178 (8%)
Query: 8 TWTCEA----FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
T T EA F VP+V SWFR+G+++++ TLP Q + LTI + + +
Sbjct: 22 TATFEAHISGFPVPEV--SWFRDGQVISTSTLP-GVQISFSDGRAKLTIPAVT-KANSGR 77
Query: 64 YQCRAKNQLKTRYSSAQLRVL--TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y +A N S+A+L V T P+F +R L+S T +G V + P P
Sbjct: 78 YSLKATNGSGQATSTAELLVKAETAPPNFVQR-LQSMTVR-QGSQVRLQVRVTGIPTPVV 135
Query: 122 VWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ +DG I S +I + G+ LLI+ +DSG YS ATN G S L+V
Sbjct: 136 KFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 22/196 (11%)
Query: 85 TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFEN 141
T P+F + PL+S EG T + P P+ W +DG +I + G + F +
Sbjct: 3 TQAPTFTQ-PLQS-VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 142 G--NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV---LHGPSYYEQLPPKITIAAHR 196
G L I V++ +SG YS ATN G S L+V P++ ++L ++ +
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ---SMTVRQ 117
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRI-GNMDLNELETPNINIDGGL--LEITNASFADA 253
Q+R + + +G I ++D I+ +G L L I A D+
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDF------QISQEGDLYSLLIAEAYPEDS 171
Query: 254 GEYECVVKSTVGKIST 269
G Y ++VG+ ++
Sbjct: 172 GTYSVNATNSVGRATS 187
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 21/192 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--FENGN-- 143
P F + P++ +G G + C P+PK VW K G + S R ++ F++G+
Sbjct: 7 PRFTRTPVDQTGVSG--GVASFICQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGS 63
Query: 144 -LLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-----PKITIAAH- 195
L I P+ + D IY C A+N G RL VL P P++ +
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 196 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD--LNELETPNINIDGGLLEITNASFADA 253
R + C+A ++ + V N + + +L + +I G L+I + +D
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESI----GALQIEQSEESDQ 179
Query: 254 GEYECVVKSTVG 265
G+YECV ++ G
Sbjct: 180 GKYECVATNSAG 191
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 24/175 (13%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
++ C+A G P W + G+ ++++ + + D +VL I+ L RD A+Y+C
Sbjct: 25 SFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG--SGSVLRIQPLRTPRDEAIYECV 82
Query: 68 AKNQLKTRYSSAQLRVL----------TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP 117
A N + S +L VL T+ + + +E A T+ C P
Sbjct: 83 ASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTA------TMLCAASGNP 136
Query: 118 KPKFVWKKDG---NIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHG 166
P+ W KD + + GR K + G L I D G Y C ATN G
Sbjct: 137 DPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAG 191
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPV--SRDDSGI 156
GG + +C P P VW+K+G + G+ R + E L I PV RDD+
Sbjct: 23 GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA-P 81
Query: 157 YSCTATNVHGMDESKGRLIVLH-------GPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 209
Y C A N G S + ++ G Q P I + + C A
Sbjct: 82 YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 141
Query: 210 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 269
++ W N ++ ++ P ++ G L+I N+ D G+YECV ++++G +
Sbjct: 142 PNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHS 193
Query: 270 KTT 272
K T
Sbjct: 194 KAT 196
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 16/174 (9%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-----NVLTIRYLNPERDPA 62
++ C A G P + W +NG+ ++ Q RY + + ++L I + RD A
Sbjct: 27 SFYCAARGDPPPSIVWRKNGKKVSGT------QSRYTVLEQPGGISILRIEPVRAGRDDA 80
Query: 63 MYQCRAKNQLKTRYSS-AQLRVLTLKPSFKKRPLESETYAGE----GGNVTIFCNPEAAP 117
Y+C A+N + S+ A L + + P+ ++ G V + C P
Sbjct: 81 PYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP 140
Query: 118 KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
P W K+ + R ++G L I +D G Y C A N G + SK
Sbjct: 141 TPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSK 194
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+ TC+A G P W +N +T RY ++D L I E D Y+C
Sbjct: 130 VLMTCKAIGNPTPNIYWIKN------QTKVDMSNPRYSLKDGFLQIENSR-EEDQGKYEC 182
Query: 67 RAKNQLKTRYSSAQ---LRVLTLKPSF 90
A+N + T +S A ++V + P+F
Sbjct: 183 VAENSMGTEHSKATNLYVKVRRVPPTF 209
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 23/183 (12%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN----LLISPV--SRDDSGI 156
GG + +C P P VW+K+G + G+ R + E L I PV RDD+
Sbjct: 21 GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA-P 79
Query: 157 YSCTATNVHGMDESKGRLIVLH-------GPSYYEQLPPKITIAAHRNLQLRCSAHTEEL 209
Y C A N G S + ++ G Q P I + + C A
Sbjct: 80 YECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT 139
Query: 210 LDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 269
++ W N ++ ++ P ++ G L+I N+ D G+YECV ++++G +
Sbjct: 140 PNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHS 191
Query: 270 KTT 272
K T
Sbjct: 192 KAT 194
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 16/174 (9%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-----NVLTIRYLNPERDPA 62
++ C A G P + W +NG+ ++ Q RY + + ++L I + RD A
Sbjct: 25 SFYCAARGDPPPSIVWRKNGKKVSG------TQSRYTVLEQPGGISILRIEPVRAGRDDA 78
Query: 63 MYQCRAKNQLKTRYSS-AQLRVLTLKPSFKKRPLESETYAGE----GGNVTIFCNPEAAP 117
Y+C A+N + S+ A L + + P+ ++ G V + C P
Sbjct: 79 PYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP 138
Query: 118 KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
P W K+ + R ++G L I +D G Y C A N G + SK
Sbjct: 139 TPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSK 192
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+ TC+A G P W +N +T RY ++D L I E D Y+C
Sbjct: 128 VLMTCKAIGNPTPNIYWIKN------QTKVDMSNPRYSLKDGFLQIENSR-EEDQGKYEC 180
Query: 67 RAKNQLKTRYSSA 79
A+N + T +S A
Sbjct: 181 VAENSMGTEHSKA 193
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 25/221 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+L+ +C A P YSW +G + + FI + E++ +Y
Sbjct: 398 NLSLSCHAASNPPAQYSWLIDGNIQ-------QHTQELFISNIT--------EKNSGLYT 442
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETY--AGEGGNVTIFCNPEAAPKPKFVW 123
C+A N + +S ++ +T+ K + S + V C PEA ++W
Sbjct: 443 CQANNS-ASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQ-NTTYLW 500
Query: 124 KKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGP 180
+G + R ++ NGN L + V+R+D+ Y C N + S L VL+GP
Sbjct: 501 WVNGQSLPVSPRLQL-SNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGP 559
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221
PP + + NL L C H+ Y W NG+
Sbjct: 560 DTPIISPPDSSYLSGANLNLSC--HSASNPSPQYSWRINGI 598
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 125/279 (44%), Gaps = 49/279 (17%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
++++ + TCE + + TY W+ +N+++LP+ + + + LT+ + D
Sbjct: 301 VEDEDAVALTCEP-EIQNTTYLWW-----VNNQSLPVSPRLQLSNDNRTLTLLSVT-RND 353
Query: 61 PAMYQCRAKNQLKTRYSS-AQLRVL------TLKPSFKKRPLESETYAGEGGNVTIFCNP 113
Y+C +N+L +S L VL T+ PS+ TY G N+++ C+
Sbjct: 354 VGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSY--------TYYRPGVNLSLSCHA 405
Query: 114 EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN-VHGMDESKG 172
+ P ++ W DGNI ++ E L IS ++ +SG+Y+C A N G +
Sbjct: 406 ASNPPAQYSWLIDGNI-----QQHTQE---LFISNITEKNSGLYTCQANNSASGHSRTTV 457
Query: 173 RLIVLHGPSYYEQLP-PKITIAAHRNLQLR-CSAHT--EELLDVAYIWTHNGVRIGNMDL 228
+ I + +LP P I+ + ++ + A T E + Y+W NG +
Sbjct: 458 KTITVSA-----ELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLP---- 508
Query: 229 NELETPNINIDGG--LLEITNASFADAGEYECVVKSTVG 265
+P + + G L + N + DA Y C ++++V
Sbjct: 509 ---VSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVS 544
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 99/275 (36%), Gaps = 47/275 (17%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+L +C A P YSWF NG S FI + +T+ + Y
Sbjct: 220 NLNLSCHAASNPPAQYSWFVNGTFQQST-------QELFIPN--ITV------NNSGSYT 264
Query: 66 CRAKNQLKTRYSSAQLRVLTL-----KP---SFKKRPLESETYAGEGGNVTIFCNPEAAP 117
C+A N T + + +T+ KP S P+E E V + C PE
Sbjct: 265 CQAHNS-DTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDE------DAVALTCEPEIQN 317
Query: 118 KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI-V 176
W + ++ S + +N L + V+R+D G Y C N +D S ++ V
Sbjct: 318 TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNV 377
Query: 177 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
L+GP P NL L C A + Y W +G NI
Sbjct: 378 LYGPDDPTISPSYTYYRPGVNLSLSCHAASNP--PAQYSWLIDG--------------NI 421
Query: 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 271
L I+N + ++G Y C ++ S T
Sbjct: 422 QQHTQELFISNITEKNSGLYTCQANNSASGHSRTT 456
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLN-SETLPLEDQDRYFIQDNVLTIRYLNPER 59
++++ + +TCE + TY W+ NG+ L S L L + +R NV
Sbjct: 479 VEDKDAVAFTCEP-EAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVT-------RN 530
Query: 60 DPAMYQCRAKNQLKT-RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK 118
D Y C +N + R L VL + P +S +G N+ + C+ + P
Sbjct: 531 DARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSG--ANLNLSCHSASNPS 588
Query: 119 PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164
P++ W+ +G I + +F I+ ++ +++G Y+C +N+
Sbjct: 589 PQYSWRING--IPQQHTQVLF------IAKITPNNNGTYACFVSNL 626
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 28/144 (19%)
Query: 133 GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM-DESKGRLIVLHGPSYYEQLPPKIT 191
GR I+ N +LLI + ++D+G Y+ + +E+ G+ V Y +L PK +
Sbjct: 62 SGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRV------YPEL-PKPS 114
Query: 192 IAAHRN--------LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG-- 241
I+++ + + C T+ D Y+W N + +P + + G
Sbjct: 115 ISSNNSKPVEDKDAVAFTCEPETQ---DATYLWWVNNQSLP-------VSPRLQLSNGNR 164
Query: 242 LLEITNASFADAGEYECVVKSTVG 265
L + N + D Y+C ++ V
Sbjct: 165 TLTLFNVTRNDTASYKCETQNPVS 188
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 18/188 (9%)
Query: 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-----NVLTIRYLNPE 58
Q++ T C+ G P W+R G+ + ++ L +Y IQ+ + L I + +
Sbjct: 19 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGL------KYRIQEFKGGYHQLIIASVTDD 72
Query: 59 RDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLE--SETYAGEGGNVTIFCNPEAA 116
D +YQ RA NQ + +A L V + LE +A G V+I
Sbjct: 73 -DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 131
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGNL--LISP--VSRDDSGIYSCTATNVHGMDESKG 172
P P W+K ++I + G ++ + L+ P V R D+G Y A N G+D+
Sbjct: 132 PDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191
Query: 173 RLIVLHGP 180
L V P
Sbjct: 192 ELDVADVP 199
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 109/302 (36%), Gaps = 49/302 (16%)
Query: 106 NVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKI--FENG--NLLISPVSRDDSGIYSCT 160
N T+ C PKP W + G II G + +I F+ G L+I+ V+ DD+ +Y
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80
Query: 161 ATNVHGMDESKGRLIV-----LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI 215
ATN G L V +H P E + + A R + D
Sbjct: 81 ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG---AVHALRGEVVSIKIPFSGKPDPVIT 137
Query: 216 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-----------DAGEYECVVKSTV 264
W DL I+ +G I SF DAG Y K+
Sbjct: 138 WQKG------QDL-------IDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 265 GKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTDGATNG-RPITHYKIIARTNWNST 323
G + S + WT+ A++G IT+Y +
Sbjct: 185 GIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAER 244
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
W V + +E RYT + N L ++Y+F+VIA N+ G +PS PS T
Sbjct: 245 WLRVGQ---ARET-RYT------VIN-LFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE 293
Query: 384 DK 385
DK
Sbjct: 294 DK 295
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 18/177 (10%)
Query: 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-----NVLTIRYLNPE 58
Q++ T C+ G P W+R G+ + ++ L +Y IQ+ + L I + +
Sbjct: 19 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGL------KYRIQEFKGGYHQLIIASVTDD 72
Query: 59 RDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLE--SETYAGEGGNVTIFCNPEAA 116
D +YQ RA NQ + +A L V + LE +A G V+I
Sbjct: 73 -DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 131
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGNL--LISP--VSRDDSGIYSCTATNVHGMDE 169
P P W+K ++I + G ++ + L+ P V R D+G Y A N G+D+
Sbjct: 132 PDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 188
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 18/184 (9%)
Query: 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-----NVLTIRYLNPE 58
Q++ T C+ G P W+R G+ + ++ L +Y IQ+ + L I + +
Sbjct: 17 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGL------KYRIQEFKGGYHQLIIASVTDD 70
Query: 59 RDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLE--SETYAGEGGNVTIFCNPEAA 116
D +YQ RA NQ + +A L V + LE +A G V+I
Sbjct: 71 -DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 129
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGNL--LISP--VSRDDSGIYSCTATNVHGMDESKG 172
P P W+K ++I + G ++ + L+ P V R D+G Y A N G+D+
Sbjct: 130 PDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 189
Query: 173 RLIV 176
L V
Sbjct: 190 ELDV 193
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 107/283 (37%), Gaps = 27/283 (9%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKK--DGNIIGSG-----GRRKI---FENGNLLISPVSRD 152
E G VT+ C+ E P P+ WK+ DG G GR ++ + +L I V
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 153 DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN-LQLRCSAHTEELLD 211
DSG Y C A + G + L + + P + I + N + + C +
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDIEYAPKFISN--QTIYYSWEGNPINISCDVKSNPPAS 131
Query: 212 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 271
+ W + + + + L+T + +LEI S D G Y C + +G +
Sbjct: 132 IH--WRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEY 188
Query: 272 TXXXXXXXXXXXXXXXXXXHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEH 330
+T+A + + + G PI HY++ + + W V H
Sbjct: 189 ILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH 248
Query: 331 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
G + + N L P +TYE +V A N G G+ S
Sbjct: 249 ----------GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 104/267 (38%), Gaps = 18/267 (6%)
Query: 9 WTCEAFG-VPDVTYSWFR-NGELL--NSETLPL--EDQDRYFIQDNVLTIRYLNPERDPA 62
+ C+ G D SWF NGE L N + + + D D + LTI N + D
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS-----STLTIYNANID-DAG 75
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 122
+Y+C + T+ + + K FK P E GE + I C+ ++ P +
Sbjct: 76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE--DAVIVCDVVSSLPPTII 133
Query: 123 WKKDGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV-HGMDESKGRLIVLHG 179
WK G I+ R + N L I + + D G Y C + G K ++++
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV 193
Query: 180 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
P + + A+ + + + WT +G I N + ++ E + D
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD-EKHIFSDD 252
Query: 240 GGLLEITNASFADAGEYECVVKSTVGK 266
L I N D EY C+ ++ G+
Sbjct: 253 SSELTIRNVDKNDEAEYVCIAENKAGE 279
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
Query: 45 IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT-LKPSFKKRPLESETYAGE 103
+ +N L IR + + D Y+C + + + ++V+ + P+ + R A
Sbjct: 152 LSNNYLQIRGIK-KTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANL 210
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGS---GGRRKIF--ENGNLLISPVSRDDSGIYS 158
G +VT+ C+ + P+P W KDG I + + IF ++ L I V ++D Y
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYV 270
Query: 159 CTATNVHGMDESKGRLIVL 177
C A N G ++ L V
Sbjct: 271 CIAENKAGEQDASIHLKVF 289
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENG- 142
+P F + P + EG + C P P W+ DG + K+ ENG
Sbjct: 8 FRPHFLQAP--GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 143 -NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL---HGPS 181
+L+I PV+ D+GIY+C ATN G + L+V GPS
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 75
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 205
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 76 VPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 206 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYE 257
++ + +I NG + G L L+ +N +E I N +F DAGEY
Sbjct: 136 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 195
Query: 258 CVVKSTVG 265
C+ +++G
Sbjct: 196 CLAGNSIG 203
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 29/197 (14%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
+ + C A G P T W +NG+ E + +Q I ++V+ D
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKG 81
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
Y C +N+ + + L V+ P + L + GG+V C + +P
Sbjct: 82 NYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 141
Query: 121 FVW----KKDGNIIGSGGR--RKIFENGN----------LLISPVSRDDSGIYSCTATNV 164
W +K+G+ G G K+ + L I V+ +D+G Y+C A N
Sbjct: 142 IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS 201
Query: 165 HGMDESKGRLIVLHGPS 181
G+ L VL P
Sbjct: 202 IGISFHSAWLTVLPAPG 218
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 15 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 74
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 205
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 75 VPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 134
Query: 206 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYE 257
++ + +I NG + G L L+ +N +E I N +F DAGEY
Sbjct: 135 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 194
Query: 258 CVVKSTVG 265
C+ +++G
Sbjct: 195 CLAGNSIG 202
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 29/196 (14%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
+ + C A G P T W +NG+ E + +Q I ++V+ D
Sbjct: 28 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKG 80
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
Y C +N+ + + L V+ P + L + GG+V C + +P
Sbjct: 81 NYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 140
Query: 121 FVW----KKDGNIIGSGGR--RKIFENGN----------LLISPVSRDDSGIYSCTATNV 164
W +K+G+ G G K+ + L I V+ +D+G Y+C A N
Sbjct: 141 IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS 200
Query: 165 HGMDESKGRLIVLHGP 180
G+ L VL P
Sbjct: 201 IGISFHSAWLTVLPAP 216
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 14 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 73
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 205
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 74 VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 133
Query: 206 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYE 257
++ + +I NG + G L L+ +N +E I N +F DAGEY
Sbjct: 134 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 193
Query: 258 CVVKSTVG 265
C+ +++G
Sbjct: 194 CLAGNSIG 201
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 35/199 (17%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
+ + C A G P T W +NG+ E + +Q I ++V+ D
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKG 79
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAP 117
Y C +N+ + + L V+ + RP L + GG+V C +
Sbjct: 80 NYTCVVENEYGSINHTYHLDVVERS---RHRPILQAGLPANASTVVGGDVEFVCKVYSDA 136
Query: 118 KPKFVW----KKDGNIIGSGGR--RKIFENGN----------LLISPVSRDDSGIYSCTA 161
+P W +K+G+ G G K+ + L I V+ +D+G Y+C A
Sbjct: 137 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 196
Query: 162 TNVHGMDESKGRLIVLHGP 180
N G+ L VL P
Sbjct: 197 GNSIGISFHSAWLTVLPAP 215
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 75
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 205
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 76 VPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 206 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYE 257
++ + +I NG + G L L+ +N +E I N +F DAGEY
Sbjct: 136 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 195
Query: 258 CVVKSTVG 265
C+ +++G
Sbjct: 196 CLAGNSIG 203
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 29/196 (14%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
+ + C A G P T W +NG+ E + +Q I ++V+ D
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKG 81
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
Y C +N+ + + L V+ P + L + GG+V C + +P
Sbjct: 82 NYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 141
Query: 121 FVW----KKDGNIIGSGGR--RKIFENGN----------LLISPVSRDDSGIYSCTATNV 164
W +K+G+ G G K+ + L I V+ +D+G Y+C A N
Sbjct: 142 IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS 201
Query: 165 HGMDESKGRLIVLHGP 180
G+ L VL P
Sbjct: 202 IGISFHSAWLTVLPAP 217
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 17/188 (9%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 75
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 205
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 76 VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 206 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYE 257
++ + +I NG + G L L+ +N +E I N +F DAGEY
Sbjct: 136 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 195
Query: 258 CVVKSTVG 265
C+ +++G
Sbjct: 196 CLAGNSIG 203
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 35/199 (17%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
+ + C A G P T W +NG+ E + +Q I ++V+ D
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKG 81
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAP 117
Y C +N+ + + L V+ + RP L + GG+V C +
Sbjct: 82 NYTCVVENEYGSINHTYHLDVVERS---RHRPILQAGLPANASTVVGGDVEFVCKVYSDA 138
Query: 118 KPKFVW----KKDGNIIGSGGR--RKIFENGN----------LLISPVSRDDSGIYSCTA 161
+P W +K+G+ G G K+ + L I V+ +D+G Y+C A
Sbjct: 139 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLA 198
Query: 162 TNVHGMDESKGRLIVLHGP 180
N G+ L VL P
Sbjct: 199 GNSIGISFHSAWLTVLPAP 217
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 19/189 (10%)
Query: 95 LESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
++ + A N F P A P P W K+G GG + + +L++ V
Sbjct: 128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 205
D G Y+C N G L VL H P LP T +++ C +
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247
Query: 206 TEELLDVAYIWTH---NGVRIGNMD---LNELETPNINIDGGLLEIT---NASFADAGEY 256
++ + ++ H NG ++G + L+T N LE+ N +F DAGEY
Sbjct: 248 SDAQPHIQWL-KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306
Query: 257 ECVVKSTVG 265
C+ +++G
Sbjct: 307 TCLAGNSIG 315
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 29/191 (15%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+ C A G P + SW +NG E + L Q + ++V+ D Y
Sbjct: 143 FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP-------SDRGNY 195
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 122
C +N+ + + L VL P + L + A G +V C + +P
Sbjct: 196 TCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQ 255
Query: 123 WKKDGNIIGS----------------GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
W K + GS G E L + V+ +D+G Y+C A N G
Sbjct: 256 WLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIG 315
Query: 167 MDESKGRLIVL 177
L+VL
Sbjct: 316 FSHHSAWLVVL 326
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 28/174 (16%)
Query: 18 DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE-RDPAMYQCRAKNQLKTRY 76
D++Y W LLN + + R F+ + N E D Y C + T+
Sbjct: 39 DLSYRW-----LLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKS 93
Query: 77 SSAQLRVLTLKPSFKKRPLESE-------TYAGEGGNVTIFCNPEAAPKPKFVWKK---- 125
++ L P +P ++ YA G NVT+ C P P W+K
Sbjct: 94 VFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEP 153
Query: 126 ---DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
I SG KIF + +D GIY C A N+ G D+ + R+ V
Sbjct: 154 MPSTAEISTSGAVLKIFN--------IQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 64/183 (34%), Gaps = 23/183 (12%)
Query: 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN----IIGSGGRRKIFE-NGNLLISPVSRD 152
E EG + + C+P ++ N I RR + + NGNL I+ V
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEAS 76
Query: 153 DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAH---------RNLQLRCS 203
D G YSC ++ + I L P I +N+ L C
Sbjct: 77 DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECF 136
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 263
A + D+ + + T I+ G +L+I N D G YEC ++
Sbjct: 137 ALGNPVPDIRWRKVLEPMP---------STAEISTSGAVLKIFNIQLEDEGIYECEAENI 187
Query: 264 VGK 266
GK
Sbjct: 188 RGK 190
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 29/196 (14%)
Query: 11 CEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
C A G P + SW +NG E + L Q + ++V+ D Y C
Sbjct: 37 CPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP-------SDRGNYTC 89
Query: 67 RAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
+N+ + + L VL P + L + A G +V C + +P W
Sbjct: 90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 149
Query: 125 K----DGNIIGSGG-----------RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE 169
K +G+ +G G + + L ++ VS D G Y C ATN G+ E
Sbjct: 150 KHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAE 209
Query: 170 SKGRLIVLHGPSYYEQ 185
K + +HGP E+
Sbjct: 210 -KAFWLSVHGPRAAEE 224
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 71/189 (37%), Gaps = 20/189 (10%)
Query: 95 LESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
++ + A N F P A P P W K+G GG + + +L++ V
Sbjct: 20 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 79
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 205
D G Y+C N G L VL H P LP T +++ C +
Sbjct: 80 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 139
Query: 206 TEELLDVAYIWTH---NGVRIGN------MDLNELETPNINIDGGLLEITNASFADAGEY 256
++ + ++ H NG ++G L + ++ D L + N S D GEY
Sbjct: 140 SDAQPHIQWL-KHVEVNGSKVGPDGTPYVTVLKSWISESVEADV-RLRLANVSERDGGEY 197
Query: 257 ECVVKSTVG 265
C + +G
Sbjct: 198 LCRATNFIG 206
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 9/175 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
D C P SW + N E + D +R+ + N + D +Y+
Sbjct: 115 DAEVVCRVSSSPAPAVSWLYH----NEEVTTISD-NRFAMLANNNLQILNINKSDEGIYR 169
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGN-VTIFCNPEAAPKPKFVWK 124
C + + + + V+ P P +S E G +T C +P+P W
Sbjct: 170 CEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF 229
Query: 125 KDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
++G +I + I + N L + + D G Y C ATN G DE + L V
Sbjct: 230 RNGKLIEEN-EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 101/265 (38%), Gaps = 22/265 (8%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD----NVLTIRYLNPERDPAMY 64
+TC A G P+ + W+ N + + R +Q + LTI N E D +Y
Sbjct: 24 FTCTAIGEPE-SIDWY------NPQGEKIISTQRVVVQKEGVRSRLTIYNANIE-DAGIY 75
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
+C+A + K + A + VL + R + S +G + + C ++P P W
Sbjct: 76 RCQATD-AKGQTQEATV-VLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWL 133
Query: 125 KDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPS 181
+ S R + N NL I +++ D GIY C G + + +++++ P
Sbjct: 134 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP 193
Query: 182 YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241
A R ++ S + A W NG I + L+ N
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE---- 249
Query: 242 LLEITNASFADAGEYECVVKSTVGK 266
L + N +D G Y C + G+
Sbjct: 250 -LTVRNIINSDGGPYVCRATNKAGE 273
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 9/175 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
D C P SW + N E + D +R+ + N + D +Y+
Sbjct: 19 DAEVVCRVSSSPAPAVSWLYH----NEEVTTISD-NRFAMLANNNLQILNINKSDEGIYR 73
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGN-VTIFCNPEAAPKPKFVWK 124
C + + + + V+ P P +S E G +T C +P+P W
Sbjct: 74 CEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF 133
Query: 125 KDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
++G +I + I + N L + + D G Y C ATN G DE + L V
Sbjct: 134 RNGKLIEEN-EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 8/167 (4%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCT 160
+G + + C ++P P W + S R + N NL I +++ D GIY C
Sbjct: 16 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 75
Query: 161 A-TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 219
G + + +++++ P A R ++ S + A W N
Sbjct: 76 GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN 135
Query: 220 GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266
G I + L+ N L + N +D G Y C + G+
Sbjct: 136 GKLIEENEKYILKGSNTE-----LTVRNIINSDGGPYVCRATNKAGE 177
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 15/187 (8%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 24 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 83
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 205
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 84 VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 143
Query: 206 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGG-LLEITNASFADAGEYECV 259
++ + +I NG + G L L+ IN +L + N + ADAGEY C
Sbjct: 144 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICK 203
Query: 260 VKSTVGK 266
V + +G+
Sbjct: 204 VSNYIGQ 210
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 33/194 (17%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
+ + C A G P T W +NG+ E + +Q I ++V+ D
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKG 89
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAP 117
Y C +N+ + + L V+ + RP L + GG+V C +
Sbjct: 90 NYTCVVENEYGSINHTYHLDVVERS---RHRPILQAGLPANASTVVGGDVEFVCKVYSDA 146
Query: 118 KPKFVW----KKDGNIIGSGGR--RKIFENGN--------LLISPVSRDDSGIYSCTATN 163
+P W +K+G+ G G K+ ++ L + V+ D+G Y C +N
Sbjct: 147 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206
Query: 164 VHGMDESKGRLIVL 177
G L VL
Sbjct: 207 YIGQANQSAWLTVL 220
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 17/187 (9%)
Query: 96 ESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVS 150
E +A N F C P P W K+G GG + ++ +L+ V
Sbjct: 17 EKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVV 76
Query: 151 RDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHT 206
D G Y+C N +G L V+ H P LP + +++ C ++
Sbjct: 77 PSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS 136
Query: 207 EELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGGLLE---ITNASFADAGEYEC 258
+ + +I NG + G L L+ +N +E I N +F DAGEY C
Sbjct: 137 DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTC 196
Query: 259 VVKSTVG 265
+ +++G
Sbjct: 197 LAGNSIG 203
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 73/193 (37%), Gaps = 29/193 (15%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
+ + C A G P T W +NG+ E + +Q I ++V+ D
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVP-------SDKG 81
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
Y C +N+ + + L V+ P + L + GG+V C + +P
Sbjct: 82 NYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 141
Query: 121 FVW----KKDGNIIGSGGR--RKIFENGN----------LLISPVSRDDSGIYSCTATNV 164
W +K+G+ G G K+ + L I V+ +D+G Y+C A N
Sbjct: 142 IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS 201
Query: 165 HGMDESKGRLIVL 177
G+ L VL
Sbjct: 202 IGISFHSAWLTVL 214
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 15/187 (8%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 24 MEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 83
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAH 205
D G Y+C N +G L V+ H P LP + +++ C +
Sbjct: 84 VPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 143
Query: 206 TEELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGG-LLEITNASFADAGEYECV 259
++ + +I NG + G L L+ IN +L + N + ADAGEY C
Sbjct: 144 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICK 203
Query: 260 VKSTVGK 266
V + +G+
Sbjct: 204 VSNYIGQ 210
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 33/194 (17%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
+ + C A G P T W +NG+ E + +Q I ++V+ D
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-------SDKG 89
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAP 117
Y C +N+ + + L V+ P RP L + GG+V C +
Sbjct: 90 NYTCVVENEYGSINHTYHLDVVERSP---HRPILQAGLPANASTVVGGDVEFVCKVYSDA 146
Query: 118 KPKFVW----KKDGNIIGSGG--RRKIFENGN--------LLISPVSRDDSGIYSCTATN 163
+P W +K+G+ G G K+ ++ L + V+ D+G Y C +N
Sbjct: 147 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 206
Query: 164 VHGMDESKGRLIVL 177
G L VL
Sbjct: 207 YIGQANQSAWLTVL 220
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGR 173
P+P +W KDG I GG+ K+ E+ L I DSG+Y+CT N G S +
Sbjct: 34 PRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCK 93
Query: 174 LIV 176
L +
Sbjct: 94 LTI 96
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 215 IWTHNGVRI---GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIST 269
IWT +G I G L+E + G LEI +D+G Y C VK++ G +S+
Sbjct: 39 IWTKDGKAITQGGKYKLSE------DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS 90
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 59 RDPAMYQCRAKNQLKTRYSSAQLRVLTL----KPSFKKRPLESETYAGEGGNVTIFCNPE 114
+D Y C A+++ KT+ +R LT+ P+ LE++T G ++ + C
Sbjct: 635 QDQGDYVCLAQDR-KTKKRHCVVRQLTVLERVAPTITGN-LENQT-TSIGESIEVSCTAS 691
Query: 115 AAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173
P P+ +W KD ++ G N NL I V ++D G+Y+C A +V G + +
Sbjct: 692 GNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 751
Query: 174 LIV 176
I+
Sbjct: 752 FII 754
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 109/307 (35%), Gaps = 75/307 (24%)
Query: 14 FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL- 72
G P W++NG +PLE + +VLTI ++ ERD Y N +
Sbjct: 355 LGYPPPEIKWYKNG-------IPLES-NHTIKAGHVLTIMEVS-ERDTGNYTVILTNPIS 405
Query: 73 KTRYSSAQLRVLTLKPSFKKR----PLESETYAGEGGNVTIFCNPEAAPKPKFV------ 122
K + S V+ + P ++ P++S Y G T+ C A P P +
Sbjct: 406 KEKQSHVVSLVVYVPPQIGEKSLISPVDSYQY---GTTQTLTCTVYAIPPPHHIHWYWQL 462
Query: 123 ----------------------WK-----KDGNIIGSGGRR-KIFENGNLLISPV---SR 151
W+ + GN I + + E N +S + +
Sbjct: 463 EEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA 522
Query: 152 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 211
+ S +Y C A N G E V GP L P + ++ L C+A +
Sbjct: 523 NVSALYKCEAVNKVGRGERVISFHVTRGPEI--TLQPDMQPTEQESVSLWCTADRSTFEN 580
Query: 212 VAYIWTHNGVRIGNMDLNELETP-----------------NINIDGGLLEITNASFADAG 254
+ W G + + + EL TP N D ++E+ NAS D G
Sbjct: 581 LT--WYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG 638
Query: 255 EYECVVK 261
+Y C+ +
Sbjct: 639 DYVCLAQ 645
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 16/154 (10%)
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
P+ +FV DGN I S +K F + +IS +G+ C A +S ++V
Sbjct: 166 PEKRFV--PDGNRI-SWDSKKGFTIPSYMIS-----YAGMVFCEAKINDESYQSIMYIVV 217
Query: 177 LHGPSYYEQ-LPPK--ITIAAHRNLQLRCSAHTEELLDVAYIW-----THNGVRIGNMDL 228
+ G Y+ L P I ++ L L C+A TE + + + W H ++ N DL
Sbjct: 218 VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 277
Query: 229 NELETPNINIDGGLLEITNASFADAGEYECVVKS 262
+ L I + +D G Y C S
Sbjct: 278 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 311
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 10 TCEAFGVPDVTYSWFRNGE-LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
+C A G P WF++ E L+ + L+D +R LTIR + E D +Y C+A
Sbjct: 687 SCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN------LTIRRVRKE-DEGLYTCQA 739
Query: 69 KNQL 72
+ L
Sbjct: 740 CSVL 743
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---- 143
P F +P + EG +V + C A P PK WK++ ++ R N
Sbjct: 16 PMFIYKPQSKKVL--EGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV 73
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
LLI V++ D+G Y+ +A N G+ RL V P+
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 40 QDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESET 99
+DR +T + + E D Y C + Y +++++ L P K + +
Sbjct: 60 EDRVTFLPTGITFKSVTRE-DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPT-VNIPS 117
Query: 100 YAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRR-KIFEN---------GNLLISP 148
A G + C+ + +P ++ W KDG ++ + + + F N G L+ P
Sbjct: 118 SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP 177
Query: 149 VSRDDSGIYSCTATNVHG 166
+S D+G YSC A N +G
Sbjct: 178 LSASDTGEYSCEARNGYG 195
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 67/187 (35%), Gaps = 19/187 (10%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKD-----------GNIIGSGGRRKIFENGNL 144
E E E V + C P+ WK D I S R F +
Sbjct: 11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGI 70
Query: 145 LISPVSRDDSGIYSCTATNVHG--MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 202
V+R+D+G Y+C + G E K +LIVL PS P +R + L C
Sbjct: 71 TFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAV-LTC 129
Query: 203 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPN----INIDGGLLEITNASFADAGEYEC 258
S + Y W +G+ + + N +N G L S +D GEY C
Sbjct: 130 SEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC 188
Query: 259 VVKSTVG 265
++ G
Sbjct: 189 EARNGYG 195
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 98 ETYAGEGGNVTIFCNPEAAPKPKFVW---KKDGNIIGSGGRRKIFENGNLLISPVSRDDS 154
+ + EG V C + P P +W +K S GR +F +G L + D+
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDN 453
Query: 155 GIYSCTATNVHGMDESKGRLIV 176
G Y C A N G D L V
Sbjct: 454 GTYLCIAANAGGNDSMPAHLHV 475
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 15/186 (8%)
Query: 96 ESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVS 150
E +A N F C P P W K+G GG + ++ +L+ V
Sbjct: 24 EKRLHAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVV 83
Query: 151 RDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHT 206
D G Y+C N +G L V+ H P LP + +++ C ++
Sbjct: 84 PSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYS 143
Query: 207 EELLDVAYI--WTHNGVRIGNMDL---NELETPNINIDGG-LLEITNASFADAGEYECVV 260
+ + +I NG + G L L+ IN +L + N + ADAGEY C V
Sbjct: 144 DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV 203
Query: 261 KSTVGK 266
+ +G+
Sbjct: 204 SNYIGQ 209
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 33/194 (17%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSE----TLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
+ + C A G P T W +NG+ E + +Q I ++V+ D
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVP-------SDKG 88
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAP 117
Y C +N+ + + L V+ P RP L + GG+V C +
Sbjct: 89 NYTCVVENEYGSINHTYHLDVVERSP---HRPILQAGLPANASTVVGGDVEFVCKVYSDA 145
Query: 118 KPKFVW----KKDGNIIGSGG--RRKIFENGN--------LLISPVSRDDSGIYSCTATN 163
+P W +K+G+ G G K+ ++ L + V+ D+G Y C +N
Sbjct: 146 QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSN 205
Query: 164 VHGMDESKGRLIVL 177
G L VL
Sbjct: 206 YIGQANQSAWLTVL 219
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENGN 143
+KP F K L+ E EG C E P P+ +W KD N + +I E GN
Sbjct: 40 VKPYFTKTILDMEVV--EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 144 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L IS V DD Y+C A N G L+V
Sbjct: 98 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 83 VLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---- 138
++ + PS + R A +VT+ C+ + P+P W KDG I +
Sbjct: 7 IVNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFN 66
Query: 139 FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
++ L+I V + D Y C A N G ++ L V
Sbjct: 67 YDGSELIIKKVDKSDEAEYICIAENKAGEQDATIHLKVF 105
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY-FIQDNVLTIRYLNPERDPAMYQ 65
+T C+A G P+ T +W ++GE + E +++++Y F D I + D A Y
Sbjct: 31 VTLACDADGFPEPTMTWTKDGEPIEQE----DNEEKYSFNYDGSELIIKKVDKSDEAEYI 86
Query: 66 CRAKNQLKTRYSSAQLRVL 84
C A+N+ + ++ L+V
Sbjct: 87 CIAENKAGEQDATIHLKVF 105
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF--ENGN 143
+KP F K L+ + EG C E P P+ +W KD N + +I E GN
Sbjct: 40 VKPYFTKTILDMDVV--EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 97
Query: 144 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L IS V DD Y+C A N G L+V
Sbjct: 98 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 16/159 (10%)
Query: 9 WTCEAFG-VPDVTYSWFR-NGELL--NSETLPL--EDQDRYFIQDNVLTIRYLNPERDPA 62
+ C+ G D SWF NGE L N + + + D D + LTI N + D
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS-----STLTIYNANID-DAG 75
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 122
+Y+C + T+ + + K FK P E GE + I C+ ++ P +
Sbjct: 76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE--DAVIVCDVVSSLPPTII 133
Query: 123 WKKDGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159
WK G I+ R + N L I + + D G Y C
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NL 144
P +K + T GE ++ C P P W + G + + K+ +G L
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLS--CQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK 189
+ ++D G+Y+C ATN G E+ +L++ P ++ P K
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLK 110
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 14/164 (8%)
Query: 10 TCEAFGVPDVTYSWFRNG-ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
+C+ G P W+R G EL+ S + R + LT+ + D +Y C A
Sbjct: 28 SCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGR----THTLTV-MTEEQEDEGVYTCIA 82
Query: 69 KNQLKTRYSSAQLRVLTLKPSFK-KRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG 127
N++ +S++L +L P F PL+ + Y G + + P P W G
Sbjct: 83 TNEVGEVETSSKL-LLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTW-FHG 140
Query: 128 NIIGSGGRRKIFEN----GNLLISPVSRD-DSGIYSCTATNVHG 166
+ EN +L++ V R +G Y +NV G
Sbjct: 141 QKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG 184
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-----RRKIFENGNLLISPVSRDDSGIY 157
EG VT C PKPK W KDG I +R + +L + + DD G Y
Sbjct: 22 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 81
Query: 158 SCTATNVHGMDESKGRLIVL---HGPS 181
+ A N G GRL+V GPS
Sbjct: 82 TIMAANPQGRISCTGRLMVQAVNSGPS 108
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-----RRKIFENGNLLISPVSRDDSGIY 157
EG VT C PKPK W KDG I +R + +L + + DD G Y
Sbjct: 21 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNY 80
Query: 158 SCTATNVHGMDESKGRLIV 176
+ A N G GRL+V
Sbjct: 81 TIMAANPQGRVSCTGRLMV 99
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 106 NVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTAT 162
NV + C K VW KD I S + F++G LLI+ S+ D+GIY
Sbjct: 23 NVLLKCKVANIKKETHIVWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 81
Query: 163 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELL--------DVAY 214
+ G D+S+ +L+ ++ KI ++A +L+++ +A +L D+
Sbjct: 82 DDRGKDKSRLKLVDEAFKELMMEVCKKIALSA-TDLKIQSTAEGIQLYSFVTYYVEDLKV 140
Query: 215 IWTHNGVRI 223
W+HNG I
Sbjct: 141 NWSHNGSAI 149
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPVSRDDSGIYS 158
EG + + CN P P+ W K+ + S + FE G I+ VS DSG Y
Sbjct: 236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295
Query: 159 CTATNVHGMDES 170
N +G + S
Sbjct: 296 LVVKNKYGSETS 307
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 105 GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSCTATN 163
G + C +P P +W+KDG ++ + R K ENG L I D+G Y+C A+
Sbjct: 24 GTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIAST 83
Query: 164 VHG 166
G
Sbjct: 84 PSG 86
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD--LNELETPN 235
GP Q P T+A L C A + + +W +GV + D + +LE
Sbjct: 6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTI--LWRKDGVLVSTQDSRIKQLEN-- 61
Query: 236 INIDGGLLEITNASFADAGEYECVVKSTVGK 266
G+L+I A D G Y C+ + G+
Sbjct: 62 -----GVLQIRYAKLGDTGRYTCIASTPSGE 87
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR--KIFENGN---LLISPVSRDDS 154
Y EG V I C A P W +DG ++ S KI+ + L ++P S +D
Sbjct: 29 YTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDF 88
Query: 155 GIYSCTATNVHGMDESKGRLIVLHGPS 181
G Y+CTA N G + + L+ PS
Sbjct: 89 GNYNCTAVNRIGQESLEFILVQADTPS 115
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYL----NPE 58
NQ ++T CE F P T SWFR+G+L LP + I N + YL + E
Sbjct: 34 NQVNIT--CEVFAYPSATISWFRDGQL-----LPSSNYSNIKIY-NTPSASYLEVTPDSE 85
Query: 59 RDPAMYQCRAKNQL 72
D Y C A N++
Sbjct: 86 NDFGNYNCTAVNRI 99
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 26/144 (18%)
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTXXXXXXXXXXXXXXXXXXHKTSATIQWTD- 301
LE+T S D G Y C + +G+ S + + ++A +Q+ +
Sbjct: 78 LEVTPDSENDFGNYNCTAVNRIGQESLEFI-LVQADTPSSPSIDQVEPYSSTAQVQFDEP 136
Query: 302 GATNGRPITHYK----IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENV-----LV 352
AT G PI YK + W+S W++ KEAS+E + L
Sbjct: 137 EATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEASMEGIVTIVGLK 181
Query: 353 PWSTYEFKVIAGNELGYGEPSSPS 376
P +TY ++ A N G GE S+ S
Sbjct: 182 PETTYAVRLAALNGKGLGEISAAS 205
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 18/159 (11%)
Query: 17 PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNP--ERDPAMYQCRAKNQLKT 74
P + +W +N ++ T+P E++ R + QD L +L P + D Y C +N
Sbjct: 53 PRINLTWHKND---SARTVPGEEETRMWAQDGAL---WLLPALQEDSGTYVCTTRNASYC 106
Query: 75 RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA------PKPKFVWKKDGN 128
S +LRV +F P S + P+ + K W KD
Sbjct: 107 DKMSIELRVFENTDAF--LPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSL 164
Query: 129 IIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTATNVH 165
++ + + G +LL+ V+ +D+G Y C T H
Sbjct: 165 LLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAH 203
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 22/194 (11%)
Query: 78 SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN---IIGSGG 134
S + R K F+ LE E A V + +P+ W K+ + + G
Sbjct: 17 SCRFRGRHYKREFR---LEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEE 73
Query: 135 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP----PKI 190
R ++G L + P ++DSG Y CT N D+ L V + LP P+I
Sbjct: 74 TRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAF--LPFISYPQI 131
Query: 191 TIAAHRNLQLRC---SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-LEIT 246
+ + L C S T + DV W + ++ L++ +++ G L +
Sbjct: 132 LTLSTSGV-LVCPDLSEFTRDKTDVKIQWYKD-----SLLLDKDNEKFLSVRGTTHLLVH 185
Query: 247 NASFADAGEYECVV 260
+ + DAG Y CV+
Sbjct: 186 DVALEDAGYYRCVL 199
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+P F +P +E GEG + +C A+ P W KD + + NGN
Sbjct: 376 QPRFIVKPYGTE--VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 433
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDE 169
L I+ V DD G Y+ A N +G E
Sbjct: 434 LTINRVKGDDKGEYTVRAKNSYGTKE 459
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
G ++ + C P P+ +W KD ++ G N NL I V ++D G+Y+C A
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 84
Query: 163 NVHGMDESKGRLIV 176
+V G + + I+
Sbjct: 85 SVLGCAKVEAFFII 98
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 10 TCEAFGVPDVTYSWFRNGE-LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
+C A G P WF++ E L+ + L+D +R LTIR + E D +Y C+A
Sbjct: 31 SCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN------LTIRRVRKE-DEGLYTCQA 83
Query: 69 KNQL 72
+ L
Sbjct: 84 CSVL 87
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+P F +P +E GEG + +C A+ P W KD + + NGN
Sbjct: 482 QPRFIVKPYGTE--VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 539
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDE 169
L I+ V DD G Y+ A N +G E
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTKE 565
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 294 SATIQWTDGATNGRP-ITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 352
+ + W A +G +T+Y I R +W ++ RYT +IE L
Sbjct: 25 AVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAK-------SRYT---YTTIEG-LR 73
Query: 353 PWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 385
YEF++IA N+ G +P P+ P D+
Sbjct: 74 AGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDE 106
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 85 TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN--- 141
TL +P Y GE + C+ + P P W + G ++ + R ++
Sbjct: 12 TLAARILTKPRSMTVYEGESARFS--CDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69
Query: 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
IS V D G YS N G E++ L +
Sbjct: 70 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 104 GGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
G +VT C ++ +P VW + N G R + NG L I V D+G Y CT +
Sbjct: 25 GADVTFICTAKSKSPAYTLVWTRLHN--GKLPSRAMDFNGILTIRNVQPSDAGTYVCTGS 82
Query: 163 NVHGMDESKGRLIV 176
N+ MD+ L V
Sbjct: 83 NMFAMDQGTATLHV 96
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 293 TSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 352
TS T+ W G N P+T+Y I R F + V G RY SI L
Sbjct: 22 TSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPF---QEVDGVATTRY------SIGG-LS 69
Query: 353 PWSTYEFKVIAGNELGYGEPS 373
P+S Y F+V+A N +G G PS
Sbjct: 70 PFSEYAFRVLAVNSIGRGPPS 90
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 402 DLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTE 460
++++W+ + P YY I +R + FQ E V I ++E
Sbjct: 23 SVTLTWD----SGNSEPVTYYGIQYRAAGTEGPFQ-----EVDGVATTRYSIGGLSPFSE 73
Query: 461 YEVKVQAINDVGPGPESEVV 480
Y +V A+N +G GP SE V
Sbjct: 74 YAFRVLAVNSIGRGPPSEAV 93
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 93 RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPV 149
+P Y GE + C+ + P P W + G ++ + R ++ IS V
Sbjct: 14 KPRSMTVYEGESARFS--CDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 71
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIV 176
D G YS N G E++ L +
Sbjct: 72 QASDEGNYSVVVENSEGKQEAEFTLTI 98
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 69/182 (37%), Gaps = 28/182 (15%)
Query: 110 FCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHG 166
F + PK +F W KD R ++ GN + + DD GIYSC T+ G
Sbjct: 23 FECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDG 82
Query: 167 M-------DESKGRLIVLHGPSYYEQLPPKITIAAH--RNLQLRCSAHTEEL---LDVAY 214
+ +E RL+ L + +P K +A Q+R E+L V Y
Sbjct: 83 IASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNY 142
Query: 215 IWTHNGVRIGNMDLNELETP----NINIDGGLLEITNASFADAGEYECVVKSTVGKISTK 270
I+ + E P +I+ + G++E+ D E + GK +
Sbjct: 143 IFNEKEI---------FEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNH 193
Query: 271 TT 272
+T
Sbjct: 194 ST 195
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 106 NVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTAT 162
NV + C K VW KD I S + F++G LLI+ S+ D+GIY
Sbjct: 238 NVLLKCKVANIKKETHIVWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 296
Query: 163 NVHGMDESKGRLI 175
+ G D+S+ +L+
Sbjct: 297 DDRGKDKSRLKLV 309
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-----GNLLISPVSRDDSGIY 157
+G V + C+ E +P W KDG ++ + + I + G L + V R D+G Y
Sbjct: 16 QGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 75
Query: 158 SCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 217
C + + S+ + + G ++ P + + + QL C A V +W
Sbjct: 76 WCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA-VGPPEPVTIVWW 134
Query: 218 HNGVRIGN 225
+IG
Sbjct: 135 RGTTKIGG 142
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG-GLLEI 245
P K+T++ + ++L CS E D+ W +G + N+D +L P G L +
Sbjct: 9 PVKLTVSQGQPVKLNCSVEGXEEPDIQ--WVKDGAVVQNLD--QLYIPVSEQHWIGFLSL 64
Query: 246 TNASFADAGEYECVVK 261
+ +DAG Y C V+
Sbjct: 65 KSVERSDAGRYWCQVE 80
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 21/177 (11%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGE----LLNSE-TLPLEDQDRYFIQDNVLTIRYLNPERDP 61
LT T F P V + + + NS+ T P DR + +T + +D
Sbjct: 21 LTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPY--ADRVTFSSSGITFSSVT-RKDN 77
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPK 120
Y C + Y + + L P K + + G + C+ + +P +
Sbjct: 78 GEYTCMVSEEGGQNYGEVSIHLTVLVPP-SKPTISVPSSVTIGNRAVLTCSEHDGSPPSE 136
Query: 121 FVWKKDG--NIIGSGGRRKIFEN---------GNLLISPVSRDDSGIYSCTATNVHG 166
+ W KDG + + + F N G+L+ PV+ DSG Y C A N +G
Sbjct: 137 YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 193
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 70/189 (37%), Gaps = 22/189 (11%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWK-----------KDGNIIGSGGRRKIFENGNL 144
+S+ E ++ + C P+ WK + I R F + +
Sbjct: 8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGI 67
Query: 145 LISPVSRDDSGIYSCTATNVHGMD--ESKGRLIVLHGPSYYE-QLPPKITIAAHRNLQLR 201
S V+R D+G Y+C + G + E L VL PS +P +TI L
Sbjct: 68 TFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG--NRAVLT 125
Query: 202 CSAHTEELLDVAYIWTHNGVRIGNMDLNE---LETPNINID--GGLLEITNASFADAGEY 256
CS H + Y W +G+ + D + + ID G L + D+GEY
Sbjct: 126 CSEH-DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEY 184
Query: 257 ECVVKSTVG 265
C ++ G
Sbjct: 185 YCQAQNGYG 193
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR--KIFENG--N 143
P+FK ++ EG +V + + PKP W ++ + RR + E G
Sbjct: 6 PTFKVSLMDQSVR--EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L I R D+G Y+C A N +G + + RL V
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 15/175 (8%)
Query: 94 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSR 151
PL +A GN T + E A +FV + N G GR I+ NG+LL ++
Sbjct: 25 PLALGAFAWYKGNTTAI-DKEIA---RFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITM 80
Query: 152 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSAHTEELL 210
D G+Y+ T+ + +H P L T+ ++ L C ++ +
Sbjct: 81 KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND---I 137
Query: 211 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265
W N L E ++ + +L I DAGEY+C + + V
Sbjct: 138 GANIQWLFNS-----QSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVS 187
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 15/175 (8%)
Query: 94 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSR 151
PL +A GN T + E A +FV + N G GR I+ NG+LL ++
Sbjct: 25 PLALGAFAWYKGNTTAI-DKEIA---RFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITM 80
Query: 152 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSAHTEELL 210
D G+Y+ T+ + +H P L T+ ++ L C ++ +
Sbjct: 81 KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND---I 137
Query: 211 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265
W N L E ++ + +L I DAGEY+C + + V
Sbjct: 138 GANIQWLFNS-----QSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVS 187
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NL 144
P F +RP +G + C P P VW+K G + + R +G L
Sbjct: 15 PCFLRRPRPVRVVSG--AEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
L++ D+G+Y C A N G + + VL P+
Sbjct: 73 LLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPPA 109
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 15/115 (13%)
Query: 378 QYNTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFW-------RKKN 430
+ T P P + + +SW P P + +N Y + + R ++
Sbjct: 10 EARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRH 69
Query: 431 DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHD 485
+ S + VG+ +TEY V V+A DVGPGPES V + D
Sbjct: 70 VVDGISREHSSWDLVGLE--------KWTEYRVWVRAHTDVGPGPESSPVLVRTD 116
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 166 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 225
G S G I+L GP+ T+A L+C A + L ++ W G
Sbjct: 1 GSSGSSGPPIILQGPANQ-------TLAVDGTALLKCKATGDPLPVIS--WLKEGFTFPG 51
Query: 226 MDLNELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKIS 268
D P I + G L+I N +D G Y CV S+ G+ S
Sbjct: 52 RD------PRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETS 89
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 105 GNVTIFCNPEAAPKPKFVWKKDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
G + C P P W K+G G R I E G L I + D+G Y+C AT+
Sbjct: 24 GTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATS 83
Query: 164 VHG 166
G
Sbjct: 84 SSG 86
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 294 SATIQWTDGATNGRPITHYKIIARTNWN--STWFNVSEHVIGKEVDRYTGRKEASIENVL 351
S + WT G N PIT + I + W + +E +G + + N L
Sbjct: 32 SVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTE---------VSGTQTTAQLN-L 81
Query: 352 VPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
P+ Y F+V+A N +G PS S QY T A +P + P+
Sbjct: 82 SPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPT 121
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 35.4 bits (80), Expect = 0.071, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 135 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
R + +G L S V D+G+Y+C TNV G + L V GPS
Sbjct: 55 RISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGPS 101
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT- 162
GG VT+ C A P P+ W KDG + + L++ + D G YSC AT
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLP------PSPVLILPEIGPQDQGTYSCVATH 78
Query: 163 NVHGMDESKGRLIVLHGP 180
+ HG ES+ I + P
Sbjct: 79 SSHGPQESRAVSISIIEP 96
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 35.4 bits (80), Expect = 0.074, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
GP + Q+P ++I R ++ DV+ W NG + + DL+++ +
Sbjct: 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVS--WYLNGRTVQSDDLHKMIVSEKGL 61
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKIS 268
+ E+ AS DAG Y CV K+ G+ +
Sbjct: 62 HSLIFEVVRAS--DAGAYACVAKNRAGEAT 89
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 35.0 bits (79), Expect = 0.088, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT- 162
GG VT+ C A P P+ W KDG + + L++ + D G YSC AT
Sbjct: 18 GGTVTLTCEVPAQPSPQIHWMKDGVPLPLP------PSPVLILPEIGPQDQGTYSCVATH 71
Query: 163 NVHGMDESKGRLIVLHGP 180
+ HG ES+ I + P
Sbjct: 72 SSHGPQESRAVSISIIEP 89
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 291 HKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 345
+ ++A +Q+ + AT G PI YK + W+S W++ KEA
Sbjct: 20 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEA 64
Query: 346 SIENV-----LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
S+E + L P +TY ++ A N G GE S+ S P +P
Sbjct: 65 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP 110
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 291 HKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 345
+ ++A +Q+ + AT G PI YK + W+S W++ KEA
Sbjct: 20 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEA 64
Query: 346 SIENV-----LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
S+E + L P +TY ++ A N G GE S+ S P +P
Sbjct: 65 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP 110
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG----- 133
LR P + P S+ +G T+ C E P P W K G + +
Sbjct: 1 GSLRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR 58
Query: 134 GRRKIFENGNLLISPV-----SRDDSGIYSCTATNVHG 166
R + +G+L + SR D G+Y C A N G
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG 96
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER---DPAMY 64
T C+A G P T W++ GE + ++ ++ +R ++ + D +Y
Sbjct: 28 TLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87
Query: 65 QCRAKNQL 72
C A+N L
Sbjct: 88 VCVARNYL 95
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 68/183 (37%), Gaps = 38/183 (20%)
Query: 11 CEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69
C A G P V Y WF+ N E+ N T L + ++ +D Y CR
Sbjct: 40 CRATGHPFVQYQWFKMNKEIPNGNTSEL-----------IFNAVHV---KDAGFYVCRVN 85
Query: 70 NQLKTRYSS-AQLRVLTLKPSFKK--------------RPLESETYAGEGGNVTIFCNPE 114
N +S +QL V + SF++ P + G + + C
Sbjct: 86 NNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMP--GSTLVLQCVAV 143
Query: 115 AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174
+P P + W K+ + + +K++ ++ V + G Y C N +SK
Sbjct: 144 GSPIPHYQWFKN-ELPLTHETKKLY-----MVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 197
Query: 175 IVL 177
I++
Sbjct: 198 III 200
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGN-----IIGSGGRRKIFENGNL----LISPVSRDD 153
EG + ++C P P+++W+K N I S GR I N +++ +D
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED 165
Query: 154 SGIYSCTATNVHG 166
G Y C ATN G
Sbjct: 166 PGEYECNATNSIG 178
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 6 DLTWTCEAFGVPDVTYSWFR--NG---ELLNSETLPLEDQDRYFI--QDNV--LTIRYLN 56
D C++ G P + W + NG E+ NS R+FI ++N L I L
Sbjct: 109 DAMMYCKSVGYPHPEWMWRKKENGVFEEISNS-------SGRFFIINKENYTELNIVNLQ 161
Query: 57 PERDPAMYQCRAKNQLKTRYSSAQLRV 83
DP Y+C A N + + S LRV
Sbjct: 162 ITEDPGEYECNATNSIGSASVSTVLRV 188
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 28/168 (16%)
Query: 96 ESETYAGEGGNVT--------IFCNPEAAPKPKFV-WKKDGNII------------GSGG 134
E + G GN+T + C + +P V W +DG I+ G
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 135 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 194
+ L I+ + D+G Y C H S+ + L G Y+ + P T+AA
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAA 120
Query: 195 HRNLQLRCSAH-TEELLDVAYIWTHNGVRI----GNMDLNELETPNIN 237
+ L C A E +D+ +W + V + G+ L P +N
Sbjct: 121 NTPFNLSCQAQGPPEPVDL--LWLQDAVPLATAPGHGPQRSLHVPGLN 166
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 106 NVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTAT 162
NV + C K VW KD I S + F++G LLI+ S+ D+GIY
Sbjct: 133 NVLLKCKVANIKKETHIVWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 191
Query: 163 NVHGMDESKGRLI 175
+ G D+S+ +L+
Sbjct: 192 DDRGKDKSRLKLV 204
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 90 FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKIFENGNLLIS 147
FK P E GE + I C+ ++ P +WK G I+ R + N L I
Sbjct: 4 FKNAPTPQEFKEGE--DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 61
Query: 148 PVSRDDSGIYSC 159
+ + D G Y C
Sbjct: 62 GIKKTDEGTYRC 73
>pdb|2E3V|A Chain A, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|B Chain B, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|C Chain C, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
Length = 122
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 25/106 (23%)
Query: 291 HKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 345
+ ++A +Q+ + AT G PI YK + W+S W++ KEA
Sbjct: 19 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEA 63
Query: 346 SIENV-----LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
S E + L P +TY ++ A N G GE S+ S P +P
Sbjct: 64 SXEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP 109
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCT 160
G + C P P VW+K G + + R +G LL++ D+G+Y C
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 88
Query: 161 ATNVHGMDESKGRLIVLHGPS 181
A N G + + VL P+
Sbjct: 89 ARNAAGEAYAAAAVTVLEPPA 109
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 21/172 (12%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD----NVLTIRYLNPERDPAMY 64
+TC A G P+ + W+ N + + R +Q + LTI N E D +Y
Sbjct: 22 FTCTAIGEPE-SIDWY------NPQGEKIISTQRVVVQKEGVRSRLTIYNANIE-DAGIY 73
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
+C+A + K + A + VL + R + S +G + + C ++P P W
Sbjct: 74 RCQATDA-KGQTQEATV-VLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWL 131
Query: 125 KDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174
+ S R + N NL I +++ D GIY C G E++G +
Sbjct: 132 YHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC-----EGRVEARGEI 178
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 91 KKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGN----L 144
K L S+ EG +T+ C P P+ W G I S GR I EN + L
Sbjct: 7 KIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHI-ENTDDLTTL 65
Query: 145 LISPVSRDDSGIYSCTATNVHGMDES 170
+I V + D G+Y+ + N G D +
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGSDSA 91
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 91 KKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGN----L 144
K L S+ EG +T+ C P P+ W G I S GR I EN + L
Sbjct: 9 KIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHI-ENTDDLTTL 67
Query: 145 LISPVSRDDSGIYSCTATNVHGMDES 170
+I V + D G+Y+ + N G D +
Sbjct: 68 IIMDVQKQDGGLYTLSLGNEFGSDSA 93
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 11 CEAFGVPDVT-YSWFRNGELLNSETLPLED--QDRYFIQDNV----LTIRYLNPERDPAM 63
C++ VP VT ++W++ + +SE L + + R+F+ + L I LN E DP
Sbjct: 105 CKSESVPPVTDWAWYK---ITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ 161
Query: 64 YQCRAKNQLKTRYSSAQLRV 83
Y+C + + + LRV
Sbjct: 162 YRCNGTSSKGSDQAIITLRV 181
>pdb|2HAZ|A Chain A, Crystal Structure Of The First Fibronectin Domain Of Human
Ncam1
Length = 105
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 25/96 (26%)
Query: 291 HKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA 345
+ ++A +Q+ + AT G PI YK + W+S W++ KEA
Sbjct: 18 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA---------------KEA 62
Query: 346 SIENV-----LVPWSTYEFKVIAGNELGYGEPSSPS 376
S+E + L P +TY ++ A N G GE S+ S
Sbjct: 63 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 98
>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1
Length = 119
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 380 NTPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 439
N+ D P +AP+ ++S+ WE + + + I Y K+ T
Sbjct: 12 NSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTS 71
Query: 440 KEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 480
+EY R+ + T+Y ++V A N G GP S+++
Sbjct: 72 QEYS------ARLENLLPDTQYFIEVGACNSAGCGPPSDMI 106
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 32.3 bits (72), Expect = 0.58, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCT 160
G + C P P VW+K G + + R +G LL++ D+G+Y C
Sbjct: 28 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 87
Query: 161 ATNVHGMDESKGRLIVLHGP 180
A N G + + VL P
Sbjct: 88 ARNAAGEAYAAAAVTVLEPP 107
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 381 TPADKPYQAPSRXXXXXXXXXDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
T +D P AP + I W+P QN YKI +RK + +ETL
Sbjct: 13 TLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLV 72
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 478
+ + + TEY +V A+ G GP ++
Sbjct: 73 SGTQLSQLIEGLD---RGTEYNFRVAALTINGTGPATD 107
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 83 VLTLKPSFKKRPLESETYAG----EGGNVTIFCNPEAAPKPKF-VWKKDGNIIGSGGRRK 137
+L ++P+FK P+ S + A EG T+ C + + WK++ + +
Sbjct: 201 ILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYN 260
Query: 138 IFENGN--------LLISPVSRDDSGIYSCTATNVHG 166
+ +G+ L IS +DSG++ C A N G
Sbjct: 261 SWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG 297
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 198 LQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
LQLRC DV I W +GV++ +E+ I G +E+ ++ AD+G Y
Sbjct: 27 LQLRCRLRD----DVQSINWLRDGVQL-------VESNRTRITGEEVEVRDSIPADSGLY 75
Query: 257 ECVVKSTVGKIST 269
CV S G +T
Sbjct: 76 ACVTSSPSGSDTT 88
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 83 VLTLKPSFKKRPLESETYAG----EGGNVTIFCNPEAAPKPKF-VWKKDGNIIGSGGRRK 137
+L ++P+FK P+ S + A EG T+ C + + WK++ + +
Sbjct: 176 ILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYN 235
Query: 138 IFENGN--------LLISPVSRDDSGIYSCTATNVHG 166
+ +G+ L IS +DSG++ C A N G
Sbjct: 236 SWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG 272
>pdb|3IKC|A Chain A, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
pdb|3IKC|C Chain C, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
Length = 218
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 47 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV--LTLKPSFKKRPLESETYAGEG 104
D LTI + E D A+Y C+ N L+T +L + P+ P SE G
Sbjct: 76 DFTLTISSVQAE-DLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGG 134
Query: 105 GNVTIFCNPEAAPKPKFVWKKDGN 128
+V F N WK DG+
Sbjct: 135 ASVVCFLNNFYPKDINVKWKIDGS 158
>pdb|3IJY|A Chain A, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IJY|C Chain C, Structure Of S67-27 In Complex With Kdo(2.8)kdo
Length = 218
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 47 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV--LTLKPSFKKRPLESETYAGEG 104
D LTI + E D A+Y C+ N L+T +L + P+ P SE G
Sbjct: 76 DFTLTISSVQAE-DLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGG 134
Query: 105 GNVTIFCNPEAAPKPKFVWKKDGN 128
+V F N WK DG+
Sbjct: 135 ASVVCFLNNFYPKDINVKWKIDGS 158
>pdb|3IJH|A Chain A, Structure Of S67-27 In Complex With Ko
pdb|3IJH|C Chain C, Structure Of S67-27 In Complex With Ko
pdb|3IJS|A Chain A, Structure Of S67-27 In Complex With Tsbp
pdb|3IJS|C Chain C, Structure Of S67-27 In Complex With Tsbp
Length = 219
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 47 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV--LTLKPSFKKRPLESETYAGEG 104
D LTI + E D A+Y C+ N L+T +L + P+ P SE G
Sbjct: 76 DFTLTISSVQAE-DLAVYYCKQSNNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGG 134
Query: 105 GNVTIFCNPEAAPKPKFVWKKDGN 128
+V F N WK DG+
Sbjct: 135 ASVVCFLNNFYPKDINVKWKIDGS 158
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 40/160 (25%)
Query: 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK---ITIAAHRN 197
+G+LL+ V + D GIY+C K +V+ P LP + + +
Sbjct: 83 DGSLLLQDVQKADEGIYTCEI-------RLKNESMVMKKPVELWVLPEEPRDLRVRVGDT 135
Query: 198 LQLRCS-------------------AHTEELLDVAYIWTHNGVRIGNMD-----LNELE- 232
Q+RCS +HTEE ++Y + +R G N ++
Sbjct: 136 TQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSY---DSNMRSGKFQSLGRFRNRVDL 192
Query: 233 TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 272
T +I+ + G +++ +D G Y C + VGK+ ++ T
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSI--YVGKLESRKT 230
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 126 DGNIIGSGGRR---KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+G ++ R + +G L S V D+G+Y+C TNV G + L V
Sbjct: 388 NGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNV 441
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN--IIGSGGRRKI-FENGNLLISPVSRD 152
ES A G +TI C+ + K VW N ++ G + NG+L V +
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTK-VWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311
Query: 153 DSGIYSCTA 161
D G+Y+C A
Sbjct: 312 DGGVYTCYA 320
>pdb|1T6W|A Chain A, Rational Design Of A Calcium-Binding Adhesion Protein Nmr,
20 Structures
Length = 99
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 134 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 53 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85
>pdb|1CDC|A Chain A, Cd2, N-Terminal Domain (1-99), Truncated Form
pdb|1CDC|B Chain B, Cd2, N-Terminal Domain (1-99), Truncated Form
Length = 99
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 134 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 53 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85
>pdb|1A6P|A Chain A, Engineering Of A Misfolded Form Of Cd2
pdb|1A6P|B Chain B, Engineering Of A Misfolded Form Of Cd2
Length = 94
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 134 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 48 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 80
>pdb|1A64|A Chain A, Engineering A Misfolded Form Of Rat Cd2
pdb|1A64|B Chain B, Engineering A Misfolded Form Of Rat Cd2
pdb|1A7B|A Chain A, Engineering A Misfolded Form Of Cd2
pdb|1A7B|B Chain B, Engineering A Misfolded Form Of Cd2
pdb|1A7B|C Chain C, Engineering A Misfolded Form Of Cd2
pdb|1A7B|D Chain D, Engineering A Misfolded Form Of Cd2
Length = 97
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 134 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 51 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 83
>pdb|1HNG|A Chain A, Crystal Structure At 2.8 Angstroms Resolution Of A Soluble
Form Of The Cell Adhesion Molecule Cd2
pdb|1HNG|B Chain B, Crystal Structure At 2.8 Angstroms Resolution Of A Soluble
Form Of The Cell Adhesion Molecule Cd2
Length = 176
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 134 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
G +I NG+L I ++RDDSG Y+ T + +G
Sbjct: 53 GAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85
>pdb|1X5F|A Chain A, The Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Neogenin
Length = 120
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ G + +I+N L+P + Y F+V+A N+ G GE S+P
Sbjct: 71 HPGEMQVTIQN-LMPATVYIFRVMAQNKHGSGESSAP 106
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPN--INIDGGLL 243
P +A +L+L+C L D A I WT +GV +G PN + G L
Sbjct: 8 PEAYVVAPGESLELQCM-----LKDAAVISWTKDGVHLG---------PNNRTVLIGEYL 53
Query: 244 EITNASFADAGEYECVVKSTV 264
+I A+ D+G Y C TV
Sbjct: 54 QIKGATPRDSGLYACTAARTV 74
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 198 LQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
LQLRC DV I W +GV++ E+ I G +E+ ++ AD+G Y
Sbjct: 21 LQLRCRLRD----DVQSINWLRDGVQLA-------ESNRTRITGEEVEVQDSVPADSGLY 69
Query: 257 ECVVKSTVGKIST 269
CV S G +T
Sbjct: 70 ACVTSSPSGSDTT 82
>pdb|2E5E|A Chain A, Solution Structure Of Variable-Type Domain Of Human
Receptor For Advanced Glycation Endproducts
Length = 101
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 137 KIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168
++ NG+L + V D GI+ C A N +G +
Sbjct: 57 RVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKE 88
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 188
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 245
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 14 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 58
Query: 246 TNASFADAGEYEC 258
NA F D+GEY+C
Sbjct: 59 VNAKFEDSGEYKC 71
>pdb|2L7U|A Chain A, Structure Of Cel-Pep-Rage V Domain Complex
Length = 105
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 137 KIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168
++ NG+L + V D GI+ C A N +G +
Sbjct: 57 RVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKE 88
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCT 160
EG + + C+ P P+ W +G I R E G L I +D G Y+C
Sbjct: 25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQYA--RSTCEAGVAELHIQDALPEDHGTYTCL 82
Query: 161 ATNVHG 166
A N G
Sbjct: 83 AENALG 88
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 272
+ G L TN + D G Y C+V ++VG + T
Sbjct: 394 LSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASAT 428
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 137 KIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168
++ NG+L + V D GI+ C A N +G +
Sbjct: 56 RVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKE 87
>pdb|1F2Q|A Chain A, Crystal Structure Of The Human High-Affinity Ige Receptor
pdb|1J86|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1J86|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1RPQ|A Chain A, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|B Chain B, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|C Chain C, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|D Chain D, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
Length = 176
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 245
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 11 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 55
Query: 246 TNASFADAGEYEC 258
NA F D+GEY+C
Sbjct: 56 VNAKFEDSGEYKC 68
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 137 KIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168
++ NG+L + V D GI+ C A N +G +
Sbjct: 59 RVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKE 90
>pdb|1J89|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|C Chain C, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|D Chain D, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|E Chain E, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J88|A Chain A, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|B Chain B, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|C Chain C, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|D Chain D, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|E Chain E, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
Length = 172
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 245
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 11 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 55
Query: 246 TNASFADAGEYEC 258
NA F D+GEY+C
Sbjct: 56 VNAKFEDSGEYKC 68
>pdb|1J87|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Hexagonal Crystal Form 1
Length = 172
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 245
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 11 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 55
Query: 246 TNASFADAGEYEC 258
NA F D+GEY+C
Sbjct: 56 VNAKFEDSGEYKC 68
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 16/73 (21%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEI 245
PP I N+ L C+ + +V+ W HNG L+E ++NI
Sbjct: 11 PPWNRIFKGENVTLTCNGNN--FFEVSSTKWFHNG------SLSEETNSSLNI------- 55
Query: 246 TNASFADAGEYEC 258
NA F D+GEY+C
Sbjct: 56 VNAKFEDSGEYKC 68
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 137 KIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168
++ NG+L + V D GI+ C A N +G +
Sbjct: 427 RVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKE 458
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 272
+ G L TN + D G+Y C+V ++ G + T
Sbjct: 365 LHDGTLNFTNVTVQDTGQYTCMVTNSAGNTTASAT 399
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 72
Query: 150 SRDDSGIYSCTATNVHG 166
D G Y+C N +G
Sbjct: 73 VPSDKGNYTCVVENEYG 89
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 18 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 77
Query: 150 SRDDSGIYSCTATNVHG 166
D G Y+C N +G
Sbjct: 78 VPSDKGNYTCVVENEYG 94
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 119
D YQC+ K L VL +KPS + ++ G + + C P+ P
Sbjct: 95 DIGTYQCKVKKAPGVANKKFLLTVL-VKPSGTRCFVDGSEEIG--NDFKLKCEPKEGSLP 151
Query: 120 -KFVWKK--DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+F W+K D + + ++ + + + S + SG YSCT N G D+ RL V
Sbjct: 152 LQFEWQKLSDSQTMPTPWLAEM-TSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
Query: 177 L 177
+
Sbjct: 211 V 211
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 306 GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGN 365
G PI HY++ + + W V H G + + N L P +TYE +V A N
Sbjct: 46 GVPIHHYQVDVKEVASEIWKIVRSH----------GVQTMVVLNNLEPNTTYEIRVAAVN 95
Query: 366 ELGYGE 371
G G+
Sbjct: 96 GKGQGD 101
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 95 LESETYAGEGGNVTIF-CNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPV 149
+E +A N F C P P W K+G GG + ++ +L++ V
Sbjct: 17 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 76
Query: 150 SRDDSGIYSCTATNVHG 166
D G Y+C N +G
Sbjct: 77 VPSDKGNYTCVVENEYG 93
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 16/154 (10%)
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
P+ +FV DGN I S +K F + +IS +G+ C A +S ++V
Sbjct: 36 PEKRFV--PDGNRI-SWDSKKGFTIPSYMIS-----YAGMVFCEAKINDESYQSIMYIVV 87
Query: 177 LHGPSYYEQ-LPPK--ITIAAHRNLQLRCSAHTEELLDVAYIW-----THNGVRIGNMDL 228
+ G Y+ L P I ++ L L C+A TE + + + W H ++ N DL
Sbjct: 88 VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 147
Query: 229 NELETPNINIDGGLLEITNASFADAGEYECVVKS 262
+ L I + +D G Y C S
Sbjct: 148 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 181
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 297 IQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356
+ WT+ + I Y I RT STW + D + R ++++ L P++
Sbjct: 219 LTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPE------DTASTRSSFTVQD-LKPFTE 271
Query: 357 YEFKVIAGNELGYGEPSSPSPQYN--TPADKPYQAPS 391
Y F++ E G G S S + + T D+P +APS
Sbjct: 272 YVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPS 308
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 421 YYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 480
+Y + W++ T ++ + + YG G+++ + S E+ PG +V
Sbjct: 487 FYVVMWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPG---QVR 543
Query: 481 TIWHDPLVI 489
T+WHDP I
Sbjct: 544 TLWHDPRNI 552
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 119
D YQC+ K L VL +KPS + ++ G + + C P+ P
Sbjct: 97 DIGTYQCKVKKAPGVANKKFLLTVL-VKPSGTRCFVDGSEEIG--NDFKLKCEPKEGSLP 153
Query: 120 -KFVWKK--DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+F W+K D + + ++ + + + S + SG YSCT N G D+ RL V
Sbjct: 154 LQFEWQKLSDSQTMPTPWLAEM-TSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 212
Query: 177 L 177
+
Sbjct: 213 V 213
>pdb|2GK2|A Chain A, Crystal Structure Of The N Terminal Domain Of Human
Ceacam1
pdb|2GK2|B Chain B, Crystal Structure Of The N Terminal Domain Of Human
Ceacam1
Length = 111
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 134 GRRKIFENGNLLISPVSRDDSGIYSC 159
GR I+ N +LLI V+++D+G Y+
Sbjct: 67 GRETIYPNASLLIQNVTQNDTGFYTL 92
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 155
ES A G +V++ C+ P F W+ + +G L ++PVS +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 156 IYSCTAT 162
Y CTAT
Sbjct: 68 SYLCTAT 74
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 155
ES A G +V++ C+ P F W+ + +G L ++PVS +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 156 IYSCTAT 162
Y CTAT
Sbjct: 68 SYLCTAT 74
>pdb|3PHO|A Chain A, Crystal Structure Of S64-4 In Complex With Psbp
pdb|3PHQ|A Chain A, Crystal Structure Of S64-4 In Complex With Kdo
Length = 217
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 58 ERDPAMYQCRAKNQLKTRYSSAQLRV--LTLKPSFKKRPLESETYAGEGGNVTIFCNPEA 115
E D A Y C+ +L+T +L + P+ P SE G +V F N
Sbjct: 84 EEDAATYYCQHSRELRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFY 143
Query: 116 APKPKFVWKKDGN 128
WK DG+
Sbjct: 144 PKDINVKWKIDGS 156
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 323 TWFNVSEHVIGKEVDR--YTGRKEASIENVLVPWSTYEFKVIAGNELGYG 370
+ ++V I K+ R Y G + + L+P TY F++ A N++G+G
Sbjct: 42 SCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFG 91
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN---LLISPVSRDDSGIYS 158
EG + + CN P P+ W K+ + + FE G I+ VS DSG Y
Sbjct: 131 EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYG 190
Query: 159 CTATNVHGMDES 170
N +G + S
Sbjct: 191 LVVKNKYGSETS 202
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 155
ES A G +V++ C+ P F W+ + +G L ++PVS +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 156 IYSCTAT 162
Y CTAT
Sbjct: 68 SYLCTAT 74
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 13/95 (13%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKD-----------GNIIGSGGRRKIFENGNL 144
E E E V + C P+ WK D I S R F +
Sbjct: 10 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGI 69
Query: 145 LISPVSRDDSGIYSCTATNVHG--MDESKGRLIVL 177
V+R+D+G Y+C + G E K +LIVL
Sbjct: 70 TFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 104
>pdb|1HYS|C Chain C, Crystal Structure Of Hiv-1 Reverse Transcriptase In
Complex With A Polypurine Tract Rna:dna
Length = 214
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 47 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA---QLRVLTLKPSFKKRPLESETYAGE 103
D LTI L PE D A Y C+ ++ + +++ P+ P SE
Sbjct: 70 DYSLTISNLEPE-DFATYYCQQYSKFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSG 128
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG 133
G +V F N W DG+ +G
Sbjct: 129 GASVVCFLNNFYPKDINVAWAIDGSAAANG 158
>pdb|2X1X|R Chain R, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2 In A Tetragonal Crystal Form
pdb|2X1W|L Chain L, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|M Chain M, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|N Chain N, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|O Chain O, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
Length = 213
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 16/154 (10%)
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
P+ +FV DGN I S +K F + +IS +G+ C A +S ++V
Sbjct: 47 PEKRFV--PDGNRI-SWDSKKGFTIPSYMISY-----AGMVFCEAKINDESYQSIMYIVV 98
Query: 177 LHGPSYYEQ-LPPK--ITIAAHRNLQLRCSAHTEELLDVAYIW-----THNGVRIGNMDL 228
+ G Y+ L P I ++ L L C+A TE + + + W H ++ N DL
Sbjct: 99 VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 158
Query: 229 NELETPNINIDGGLLEITNASFADAGEYECVVKS 262
+ L I + +D G Y C S
Sbjct: 159 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 192
>pdb|2HMI|C Chain C, Hiv-1 Reverse TranscriptaseFRAGMENT OF FAB 28DNA COMPLEX
pdb|1J5O|L Chain L, Crystal Structure Of Met184ile Mutant Of Hiv-1 Reverse
Transcriptase In Complex With Double Stranded Dna
Template- Primer
Length = 214
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 47 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA---QLRVLTLKPSFKKRPLESETYAGE 103
D LTI L PE D A Y C+ ++ + +++ P+ P SE
Sbjct: 70 DYSLTISNLEPE-DFATYYCQQYSKFPWTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSG 128
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG 133
G +V F N W DG+ +G
Sbjct: 129 GASVVCFLNNFYPKDINVAWAIDGSAAANG 158
>pdb|1A0Q|L Chain L, 29g11 Complexed With Phenyl [1-(1-N-Succinylamino)pentyl]
Phosphonate
Length = 212
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 46 QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV--LTLKPSFKKRPLESETYAGE 103
+D +I L PE D A Y C L+T +L + P+ P SE
Sbjct: 69 RDYSFSISNLEPE-DIATYYCLQYYNLRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSG 127
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGN 128
G +V F N + WK DG+
Sbjct: 128 GASVVCFLNNFYSKDINVKWKIDGS 152
>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
Affinity Immunoglobulin G Binding
Length = 262
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 42 RYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYA 101
++F ++ LTI N + Y C K RY+SA + V T+K F L + +
Sbjct: 125 KFFHWNSNLTILKTNISHN-GTYHCSGMG--KHRYTSAGISV-TVKELFPAPVLNASVTS 180
Query: 102 G--EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159
EG VT+ C + + + +GS R + I R+DSG+Y C
Sbjct: 181 PLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWC 240
Query: 160 TATNVHG 166
A G
Sbjct: 241 EAATEDG 247
>pdb|3BZQ|A Chain A, High Resolution Crystal Structure Of Nitrogen Regulatory
Protein (Rv2919c) Of Mycobacterium Tuberculosis
Length = 114
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 192
S +D+G+ T + + G KG V G Y PK+ I
Sbjct: 21 SLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRI 63
>pdb|3LF0|A Chain A, Crystal Structure Of The Atp Bound Mycobacterium
Tuberculosis Nitrogen Regulatory Pii Protein
pdb|3LF0|B Chain B, Crystal Structure Of The Atp Bound Mycobacterium
Tuberculosis Nitrogen Regulatory Pii Protein
pdb|3LF0|C Chain C, Crystal Structure Of The Atp Bound Mycobacterium
Tuberculosis Nitrogen Regulatory Pii Protein
Length = 114
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 192
S +D+G+ T + + G KG V G Y PK+ I
Sbjct: 21 SLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRI 63
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 421 YYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 480
+Y + W++ T ++ + + YG G+++ + S E+ PG +V
Sbjct: 490 FYVVXWKQVTQTYWEDQPTRAYGYSGVSLKVVNSTTGTGEHLRNALWHTGNTPG---QVR 546
Query: 481 TIWHDPLVI 489
T+WHDP I
Sbjct: 547 TLWHDPRNI 555
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 100 YAGEGGNVTIFCNPEAAPKP-KFVWKK-DGN----IIGSGGRRKIFENGNLLISPVSRDD 153
+ G G V + CN +A P P K VW + DG ++ S +N + P++ +
Sbjct: 224 FVGRKG-VNLKCNADANPPPFKSVWSRLDGQWPDGLLAS-------DNTLHFVHPLTFNY 275
Query: 154 SGIYSCTATNVHGMDESKGRLIVLHGP 180
SG+Y C TN G S ++I + P
Sbjct: 276 SGVYICKVTNSLGQ-RSDQKVIYISDP 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,145,713
Number of Sequences: 62578
Number of extensions: 710436
Number of successful extensions: 2382
Number of sequences better than 100.0: 182
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 1828
Number of HSP's gapped (non-prelim): 399
length of query: 505
length of database: 14,973,337
effective HSP length: 103
effective length of query: 402
effective length of database: 8,527,803
effective search space: 3428176806
effective search space used: 3428176806
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)