Query psy14886
Match_columns 505
No_of_seqs 263 out of 2781
Neff 11.5
Searched_HMMs 46136
Date Fri Aug 16 23:19:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 9.4E-66 2E-70 494.4 52.5 482 2-500 344-836 (1051)
2 KOG4221|consensus 100.0 1.2E-54 2.5E-59 415.6 37.3 461 1-490 152-716 (1381)
3 KOG3513|consensus 100.0 5.3E-51 1.1E-55 392.9 41.9 455 2-489 254-715 (1051)
4 KOG4221|consensus 100.0 3E-44 6.6E-49 344.4 44.7 463 2-502 52-634 (1381)
5 KOG4222|consensus 100.0 5.5E-39 1.2E-43 306.7 29.8 459 2-485 144-844 (1281)
6 KOG4222|consensus 100.0 1.2E-38 2.6E-43 304.4 24.7 465 1-484 43-620 (1281)
7 PHA02785 IL-beta-binding prote 100.0 5.3E-27 1.1E-31 211.5 29.5 251 2-267 39-318 (326)
8 KOG4194|consensus 100.0 1.1E-27 2.5E-32 215.4 22.8 262 3-277 517-797 (873)
9 PHA02826 IL-1 receptor-like pr 99.9 1.3E-20 2.8E-25 158.9 19.1 156 1-166 34-212 (227)
10 KOG4194|consensus 99.9 2.6E-20 5.6E-25 168.5 16.8 172 2-182 625-801 (873)
11 KOG0196|consensus 99.8 4.4E-18 9.5E-23 159.3 19.3 203 276-487 329-537 (996)
12 PHA02785 IL-beta-binding prote 99.8 2.2E-16 4.8E-21 142.8 27.3 190 100-302 37-245 (326)
13 PHA02826 IL-1 receptor-like pr 99.8 1.5E-16 3.3E-21 134.4 19.9 155 98-264 31-211 (227)
14 cd05852 Ig5_Contactin-1 Fifth 99.6 3.3E-15 7.2E-20 102.3 9.1 72 4-83 1-73 (73)
15 cd05745 Ig3_Peroxidasin Third 99.6 4.5E-15 9.7E-20 102.8 9.4 73 3-83 1-74 (74)
16 cd05762 Ig8_MLCK Eighth immuno 99.6 9.8E-15 2.1E-19 106.6 11.5 85 97-181 8-95 (98)
17 cd05852 Ig5_Contactin-1 Fifth 99.6 6.4E-15 1.4E-19 100.8 9.5 73 104-176 1-73 (73)
18 cd05745 Ig3_Peroxidasin Third 99.6 7.8E-15 1.7E-19 101.6 9.3 74 103-176 1-74 (74)
19 cd05851 Ig3_Contactin-1 Third 99.6 7.1E-15 1.5E-19 105.3 9.3 75 1-83 13-87 (88)
20 cd05867 Ig4_L1-CAM_like Fourth 99.6 2E-14 4.2E-19 100.2 11.0 75 4-83 1-75 (76)
21 KOG3515|consensus 99.6 1.7E-13 3.7E-18 131.0 20.9 414 2-435 313-737 (741)
22 cd05851 Ig3_Contactin-1 Third 99.6 1.5E-14 3.3E-19 103.5 10.3 87 87-176 1-87 (88)
23 cd05762 Ig8_MLCK Eighth immuno 99.6 1.4E-14 3E-19 105.8 10.1 77 1-85 12-92 (98)
24 cd05728 Ig4_Contactin-2-like F 99.6 1.9E-14 4.1E-19 102.6 10.2 75 1-83 11-85 (85)
25 cd05892 Ig_Myotilin_C C-termin 99.6 2.3E-14 4.9E-19 98.4 9.7 70 7-83 1-75 (75)
26 cd04975 Ig4_SCFR_like Fourth i 99.6 2.3E-14 5E-19 104.6 9.9 77 1-84 15-100 (101)
27 cd05893 Ig_Palladin_C C-termin 99.6 3.3E-14 7.1E-19 97.8 9.2 70 7-83 1-75 (75)
28 cd05868 Ig4_NrCAM Fourth immun 99.6 4.7E-14 1E-18 97.9 10.1 76 4-84 1-76 (76)
29 cd05730 Ig3_NCAM-1_like Third 99.6 1.1E-13 2.5E-18 101.3 12.4 91 87-177 1-93 (95)
30 cd04976 Ig2_VEGFR Second immun 99.5 4.7E-14 1E-18 96.3 9.4 70 7-84 1-70 (71)
31 cd05737 Ig_Myomesin_like_C C-t 99.5 4.6E-14 9.9E-19 102.4 9.7 75 1-83 13-92 (92)
32 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 5.6E-14 1.2E-18 99.9 9.9 76 1-83 7-86 (86)
33 cd05863 Ig2_VEGFR-3 Second imm 99.5 5.8E-14 1.3E-18 93.4 9.2 66 7-84 1-66 (67)
34 cd04975 Ig4_SCFR_like Fourth i 99.5 6.6E-14 1.4E-18 102.2 9.8 81 97-177 11-100 (101)
35 cd05723 Ig4_Neogenin Fourth im 99.5 1.2E-13 2.6E-18 94.6 10.5 70 6-83 1-71 (71)
36 cd05735 Ig8_DSCAM Eight immuno 99.5 1.1E-13 2.5E-18 98.9 10.7 75 4-85 1-83 (88)
37 cd05723 Ig4_Neogenin Fourth im 99.5 7.8E-14 1.7E-18 95.5 9.4 71 106-176 1-71 (71)
38 cd04969 Ig5_Contactin_like Fif 99.5 8.8E-14 1.9E-18 96.1 9.7 72 4-83 1-73 (73)
39 cd05892 Ig_Myotilin_C C-termin 99.5 7.6E-14 1.7E-18 95.8 8.7 70 107-176 1-75 (75)
40 cd04969 Ig5_Contactin_like Fif 99.5 1.1E-13 2.4E-18 95.5 9.5 73 104-176 1-73 (73)
41 cd04978 Ig4_L1-NrCAM_like Four 99.5 1.2E-13 2.6E-18 96.6 9.6 76 4-84 1-76 (76)
42 cd04968 Ig3_Contactin_like Thi 99.5 1.4E-13 3E-18 99.1 10.0 75 1-83 13-87 (88)
43 cd05747 Ig5_Titin_like M5, fif 99.5 2.8E-13 6E-18 98.4 11.5 87 86-174 2-91 (92)
44 cd04973 Ig1_FGFR First immunog 99.5 1.3E-13 2.7E-18 96.7 9.2 74 1-83 6-79 (79)
45 cd05853 Ig6_Contactin-4 Sixth 99.5 1.9E-13 4.1E-18 95.5 9.9 76 5-85 1-83 (85)
46 cd05859 Ig4_PDGFR-alpha Fourth 99.5 1.6E-13 3.5E-18 100.4 10.0 82 2-84 16-100 (101)
47 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 2.1E-13 4.6E-18 92.2 9.8 68 4-81 1-68 (69)
48 cd05737 Ig_Myomesin_like_C C-t 99.5 2.4E-13 5.3E-18 98.6 10.5 80 97-176 9-92 (92)
49 cd05744 Ig_Myotilin_C_like Imm 99.5 2.5E-13 5.5E-18 93.8 9.9 70 7-83 1-75 (75)
50 cd05867 Ig4_L1-CAM_like Fourth 99.5 3.5E-13 7.6E-18 93.8 10.3 73 104-176 1-75 (76)
51 cd05728 Ig4_Contactin-2-like F 99.5 3.2E-13 6.9E-18 96.2 10.0 79 97-176 7-85 (85)
52 cd04968 Ig3_Contactin_like Thi 99.5 4.1E-13 9E-18 96.7 10.6 79 97-176 9-87 (88)
53 cd05857 Ig2_FGFR Second immuno 99.5 2.7E-13 5.8E-18 97.2 9.5 78 1-83 6-85 (85)
54 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 8.3E-13 1.8E-17 93.9 11.8 80 97-176 3-86 (86)
55 cd05868 Ig4_NrCAM Fourth immun 99.5 3.6E-13 7.7E-18 93.5 9.5 73 104-176 1-75 (76)
56 cd07702 Ig2_VEGFR-1 Second imm 99.5 3.4E-13 7.3E-18 91.1 9.0 69 7-82 1-69 (72)
57 cd05730 Ig3_NCAM-1_like Third 99.5 4.3E-13 9.4E-18 98.2 10.4 77 2-85 16-94 (95)
58 cd05864 Ig2_VEGFR-2 Second imm 99.5 3.3E-13 7.3E-18 91.1 9.0 69 7-84 1-69 (70)
59 cd05740 Ig_CEACAM_D4 Fourth im 99.5 4.1E-13 8.9E-18 96.4 9.9 73 1-83 15-90 (91)
60 cd05854 Ig6_Contactin-2 Sixth 99.5 6.5E-13 1.4E-17 94.2 10.8 76 5-85 1-83 (85)
61 cd05893 Ig_Palladin_C C-termin 99.5 2.4E-13 5.2E-18 93.5 8.3 70 107-176 1-75 (75)
62 cd05865 Ig1_NCAM-1 First immun 99.5 5E-13 1.1E-17 96.8 10.2 76 1-83 12-95 (96)
63 cd05746 Ig4_Peroxidasin Fourth 99.5 2.9E-13 6.3E-18 92.1 8.5 67 7-81 1-68 (69)
64 cd05740 Ig_CEACAM_D4 Fourth im 99.5 7.5E-13 1.6E-17 95.1 11.0 79 96-176 10-90 (91)
65 cd05746 Ig4_Peroxidasin Fourth 99.5 2.6E-13 5.6E-18 92.4 8.1 68 107-174 1-68 (69)
66 cd05876 Ig3_L1-CAM Third immun 99.5 3.8E-13 8.2E-18 92.1 8.6 70 7-83 1-70 (71)
67 cd05735 Ig8_DSCAM Eight immuno 99.5 6E-13 1.3E-17 95.2 9.9 78 104-181 1-86 (88)
68 cd05865 Ig1_NCAM-1 First immun 99.5 4.4E-13 9.4E-18 97.1 9.2 80 97-176 8-95 (96)
69 cd04972 Ig_TrkABC_d4 Fourth do 99.5 9.2E-13 2E-17 95.2 10.9 75 1-83 12-90 (90)
70 cd05853 Ig6_Contactin-4 Sixth 99.5 7E-13 1.5E-17 92.6 9.6 76 105-180 1-85 (85)
71 cd05756 Ig1_IL1R_like First im 99.5 2.9E-13 6.3E-18 97.7 7.9 79 1-83 11-94 (94)
72 cd05725 Ig3_Robo Third immunog 99.5 5.4E-13 1.2E-17 91.0 8.8 68 7-83 1-69 (69)
73 cd05848 Ig1_Contactin-5 First 99.5 1.1E-12 2.5E-17 95.1 10.9 70 3-77 18-87 (94)
74 cd04978 Ig4_L1-NrCAM_like Four 99.4 9.9E-13 2.2E-17 92.0 9.8 73 104-176 1-75 (76)
75 KOG3515|consensus 99.4 1.8E-11 4E-16 117.3 21.4 456 3-484 111-606 (741)
76 cd05760 Ig2_PTK7 Second immuno 99.4 1.3E-12 2.8E-17 91.0 10.2 70 7-83 1-72 (77)
77 cd05876 Ig3_L1-CAM Third immun 99.4 4.9E-13 1.1E-17 91.5 7.9 70 107-176 1-70 (71)
78 cd05748 Ig_Titin_like Immunogl 99.4 1.1E-12 2.3E-17 91.0 9.7 70 6-83 1-74 (74)
79 cd05863 Ig2_VEGFR-3 Second imm 99.4 5.5E-13 1.2E-17 88.7 7.8 65 107-176 1-65 (67)
80 cd05744 Ig_Myotilin_C_like Imm 99.4 1.1E-12 2.3E-17 90.8 9.5 70 107-176 1-75 (75)
81 cd05859 Ig4_PDGFR-alpha Fourth 99.4 9.5E-13 2.1E-17 96.3 9.6 80 98-177 12-100 (101)
82 cd05747 Ig5_Titin_like M5, fif 99.4 1.3E-12 2.9E-17 94.7 10.3 73 1-81 15-91 (92)
83 cd05870 Ig5_NCAM-2 Fifth immun 99.4 9.2E-13 2E-17 96.8 9.4 80 1-83 13-98 (98)
84 cd05726 Ig4_Robo Fhird immunog 99.4 1.2E-12 2.5E-17 94.6 9.8 81 4-85 1-83 (90)
85 cd05866 Ig1_NCAM-2 First immun 99.4 1.5E-12 3.3E-17 93.2 10.1 74 1-83 12-91 (92)
86 cd05850 Ig1_Contactin-2 First 99.4 2.3E-12 5.1E-17 93.5 11.3 70 3-77 18-87 (94)
87 cd05891 Ig_M-protein_C C-termi 99.4 1.3E-12 2.8E-17 94.4 9.8 75 1-83 13-92 (92)
88 cd05869 Ig5_NCAM-1 Fifth immun 99.4 1.5E-12 3.2E-17 95.6 10.2 79 2-83 15-97 (97)
89 cd05743 Ig_Perlecan_D2_like Im 99.4 1.5E-12 3.3E-17 91.1 9.6 72 4-83 1-76 (78)
90 cd05854 Ig6_Contactin-2 Sixth 99.4 1.9E-12 4.1E-17 91.8 10.2 76 105-180 1-85 (85)
91 cd05726 Ig4_Robo Fhird immunog 99.4 1.8E-12 4E-17 93.6 10.3 76 104-179 1-84 (90)
92 cd05764 Ig_2 Subgroup of the i 99.4 1.8E-12 4E-17 89.9 9.8 73 104-176 1-74 (74)
93 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 2E-12 4.4E-17 89.3 9.9 71 7-83 1-73 (74)
94 cd05855 Ig_TrkB_d5 Fifth domai 99.4 1.5E-12 3.2E-17 89.6 8.8 66 9-82 3-77 (79)
95 cd05724 Ig2_Robo Second immuno 99.4 3.1E-12 6.7E-17 92.0 10.9 79 97-175 4-85 (86)
96 cd04970 Ig6_Contactin_like Six 99.4 1.8E-12 3.8E-17 92.6 9.5 76 5-85 1-83 (85)
97 PF00041 fn3: Fibronectin type 99.4 6.9E-13 1.5E-17 95.4 7.3 83 389-477 2-85 (85)
98 cd04973 Ig1_FGFR First immunog 99.4 2.4E-12 5.2E-17 90.2 9.8 77 98-176 3-79 (79)
99 cd04972 Ig_TrkABC_d4 Fourth do 99.4 1.9E-12 4.1E-17 93.6 9.4 79 98-176 9-90 (90)
100 cd05764 Ig_2 Subgroup of the i 99.4 2.6E-12 5.7E-17 89.1 9.8 72 4-83 1-74 (74)
101 PF07679 I-set: Immunoglobulin 99.4 1.5E-12 3.2E-17 94.7 8.9 80 97-176 8-90 (90)
102 cd05857 Ig2_FGFR Second immuno 99.4 3.3E-12 7.2E-17 91.5 10.5 77 100-176 5-85 (85)
103 cd05731 Ig3_L1-CAM_like Third 99.4 1.5E-12 3.2E-17 89.7 8.3 70 7-83 1-70 (71)
104 cd04976 Ig2_VEGFR Second immun 99.4 1.7E-12 3.7E-17 88.6 8.3 69 107-176 1-69 (71)
105 cd05849 Ig1_Contactin-1 First 99.4 2.7E-12 5.9E-17 92.6 9.8 68 4-77 19-86 (93)
106 cd05856 Ig2_FGFRL1-like Second 99.4 1.7E-12 3.6E-17 92.5 8.6 76 2-83 7-82 (82)
107 cd05748 Ig_Titin_like Immunogl 99.4 3.9E-12 8.5E-17 88.2 10.2 71 106-176 1-74 (74)
108 cd05725 Ig3_Robo Third immunog 99.4 2.4E-12 5.2E-17 87.8 8.8 69 107-176 1-69 (69)
109 cd05849 Ig1_Contactin-1 First 99.4 5.8E-12 1.2E-16 90.9 11.2 68 104-171 19-87 (93)
110 cd05891 Ig_M-protein_C C-termi 99.4 4.2E-12 9.2E-17 91.7 10.6 81 96-176 8-92 (92)
111 cd05866 Ig1_NCAM-2 First immun 99.4 2.5E-12 5.4E-17 92.1 9.2 79 97-176 8-91 (92)
112 cd05773 Ig8_hNephrin_like Eigh 99.4 8.5E-12 1.8E-16 93.2 12.4 94 87-180 4-108 (109)
113 cd05724 Ig2_Robo Second immuno 99.4 3.3E-12 7.3E-17 91.8 9.9 75 1-82 8-85 (86)
114 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 2.6E-12 5.6E-17 88.8 8.8 70 107-176 1-73 (74)
115 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 3E-12 6.5E-17 89.5 9.1 70 9-82 3-79 (81)
116 cd05771 IgC_Tapasin_R Tapasin- 99.4 4.7E-12 1E-16 99.9 11.4 114 48-165 1-131 (139)
117 PF07679 I-set: Immunoglobulin 99.4 1.2E-12 2.7E-17 95.1 7.5 75 1-83 12-90 (90)
118 cd05763 Ig_1 Subgroup of the i 99.4 2.9E-12 6.3E-17 89.0 8.9 72 7-83 1-74 (75)
119 cd04974 Ig3_FGFR Third immunog 99.4 2.9E-12 6.3E-17 92.3 9.2 80 4-84 1-90 (90)
120 cd04970 Ig6_Contactin_like Six 99.4 2.6E-12 5.6E-17 91.7 8.8 76 105-180 1-85 (85)
121 cd07693 Ig1_Robo First immunog 99.4 6.6E-12 1.4E-16 93.4 11.3 87 88-176 2-99 (100)
122 cd05864 Ig2_VEGFR-2 Second imm 99.4 2.1E-12 4.5E-17 87.2 7.6 68 107-176 1-68 (70)
123 cd05732 Ig5_NCAM-1_like Fifth 99.4 4.6E-12 1E-16 93.1 10.1 80 1-83 13-96 (96)
124 cd05869 Ig5_NCAM-1 Fifth immun 99.4 4.3E-12 9.4E-17 93.0 9.7 78 99-176 12-97 (97)
125 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 4.2E-12 9E-17 85.9 8.8 68 104-174 1-68 (69)
126 cd05743 Ig_Perlecan_D2_like Im 99.4 3.5E-12 7.5E-17 89.2 8.7 73 104-176 1-76 (78)
127 cd05773 Ig8_hNephrin_like Eigh 99.4 6.2E-12 1.3E-16 93.9 10.5 77 3-85 22-106 (109)
128 cd05858 Ig3_FGFR-2 Third immun 99.4 4.6E-12 9.9E-17 91.5 9.0 79 4-83 1-89 (90)
129 cd05870 Ig5_NCAM-2 Fifth immun 99.4 7.8E-12 1.7E-16 91.9 10.1 80 97-176 9-98 (98)
130 cd05731 Ig3_L1-CAM_like Third 99.4 3.8E-12 8.3E-17 87.7 7.7 70 107-176 1-70 (71)
131 cd05848 Ig1_Contactin-5 First 99.3 1.2E-11 2.5E-16 89.8 10.5 69 103-171 18-88 (94)
132 cd05749 Ig2_Tyro3_like Second 99.3 5.8E-12 1.3E-16 87.7 8.3 65 1-77 10-75 (81)
133 cd05855 Ig_TrkB_d5 Fifth domai 99.3 5.5E-12 1.2E-16 86.8 7.9 68 108-175 2-77 (79)
134 cd05850 Ig1_Contactin-2 First 99.3 2.5E-11 5.5E-16 88.1 11.8 68 104-171 19-88 (94)
135 cd07702 Ig2_VEGFR-1 Second imm 99.3 7.5E-12 1.6E-16 84.5 8.0 66 107-172 1-66 (72)
136 cd05765 Ig_3 Subgroup of the i 99.3 8.9E-12 1.9E-16 88.4 8.9 77 4-83 1-81 (81)
137 cd05722 Ig1_Neogenin First imm 99.3 1.7E-11 3.8E-16 89.6 10.6 79 97-175 7-94 (95)
138 cd07693 Ig1_Robo First immunog 99.3 1.3E-11 2.7E-16 91.9 10.0 81 1-83 13-99 (100)
139 cd05756 Ig1_IL1R_like First im 99.3 1.2E-11 2.7E-16 89.2 9.2 78 98-176 8-94 (94)
140 cd05758 Ig5_KIRREL3-like Fifth 99.3 1.4E-11 3E-16 90.6 9.5 75 1-81 13-97 (98)
141 cd05736 Ig2_Follistatin_like S 99.3 2.3E-11 4.9E-16 84.8 10.2 72 7-84 1-74 (76)
142 cd05722 Ig1_Neogenin First imm 99.3 1.6E-11 3.5E-16 89.7 9.8 76 1-82 11-94 (95)
143 cd05760 Ig2_PTK7 Second immuno 99.3 1.5E-11 3.3E-16 85.6 9.2 70 107-176 1-74 (77)
144 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 1.4E-11 3E-16 86.2 8.7 68 108-175 2-79 (81)
145 cd05749 Ig2_Tyro3_like Second 99.3 1.5E-11 3.3E-16 85.6 8.8 70 97-171 6-76 (81)
146 cd05732 Ig5_NCAM-1_like Fifth 99.3 2.4E-11 5.2E-16 89.3 10.4 79 98-176 10-96 (96)
147 cd05873 Ig_Sema4D_like Immunog 99.3 2.1E-11 4.5E-16 85.6 9.3 63 1-71 8-70 (87)
148 cd05733 Ig6_L1-CAM_like Sixth 99.3 2.3E-11 5.1E-16 84.7 9.3 66 7-77 1-71 (77)
149 cd05763 Ig_1 Subgroup of the i 99.3 1.7E-11 3.8E-16 85.1 8.6 70 107-176 1-74 (75)
150 cd04974 Ig3_FGFR Third immunog 99.3 1.9E-11 4E-16 88.1 9.0 73 104-176 1-89 (90)
151 cd04967 Ig1_Contactin First Ig 99.3 4.3E-11 9.4E-16 86.6 10.8 70 3-77 18-87 (91)
152 cd05874 Ig6_NrCAM Sixth immuno 99.3 4E-11 8.6E-16 83.2 10.0 66 7-78 1-72 (77)
153 cd05734 Ig7_DSCAM Seventh immu 99.3 2.3E-11 4.9E-16 85.5 8.7 75 7-82 1-78 (79)
154 cd05856 Ig2_FGFRL1-like Second 99.3 1.7E-11 3.7E-16 87.3 8.2 77 100-176 5-82 (82)
155 cd05750 Ig_Pro_neuregulin Immu 99.3 1.2E-11 2.5E-16 86.3 7.1 69 7-80 1-74 (75)
156 cd05742 Ig1_VEGFR_like First i 99.3 2.1E-11 4.6E-16 86.8 8.4 79 4-83 1-83 (84)
157 cd04977 Ig1_NCAM-1_like First 99.3 2.8E-11 6.1E-16 87.4 9.1 78 97-175 8-91 (92)
158 cd04977 Ig1_NCAM-1_like First 99.3 2.9E-11 6.3E-16 87.4 9.1 73 1-82 12-91 (92)
159 cd05758 Ig5_KIRREL3-like Fifth 99.3 6E-11 1.3E-15 87.2 11.0 78 97-174 9-97 (98)
160 cd05858 Ig3_FGFR-2 Third immun 99.3 2.6E-11 5.7E-16 87.5 8.8 73 104-176 1-89 (90)
161 cd05875 Ig6_hNeurofascin_like 99.3 7E-11 1.5E-15 82.0 10.5 67 7-78 1-72 (77)
162 cd05873 Ig_Sema4D_like Immunog 99.3 1.1E-10 2.3E-15 82.0 10.7 67 97-164 4-70 (87)
163 cd05882 Ig1_Necl-1 First (N-te 99.3 2.2E-11 4.9E-16 87.8 7.5 69 1-70 9-83 (95)
164 cd05757 Ig2_IL1R_like Second i 99.2 4.8E-11 1E-15 85.4 8.8 73 1-81 7-84 (92)
165 cd05736 Ig2_Follistatin_like S 99.2 8.8E-11 1.9E-15 81.8 9.8 71 107-177 1-74 (76)
166 cd05754 Ig3_Perlecan_like Thir 99.2 3.3E-11 7.1E-16 86.1 7.6 71 1-81 13-84 (85)
167 cd05771 IgC_Tapasin_R Tapasin- 99.2 1.9E-10 4.2E-15 90.7 12.7 122 143-265 2-132 (139)
168 cd04979 Ig_Semaphorin_C Immuno 99.2 5.6E-11 1.2E-15 85.7 8.8 80 1-85 8-88 (89)
169 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 7E-11 1.5E-15 83.6 8.7 77 4-84 1-83 (84)
170 cd05734 Ig7_DSCAM Seventh immu 99.2 6.2E-11 1.4E-15 83.2 8.2 69 107-175 1-78 (79)
171 cd05765 Ig_3 Subgroup of the i 99.2 8.3E-11 1.8E-15 83.4 8.7 73 104-176 1-81 (81)
172 cd05895 Ig_Pro_neuregulin-1 Im 99.2 1E-10 2.2E-15 81.5 8.6 70 7-80 1-75 (76)
173 cd05729 Ig2_FGFR_like Second i 99.2 2E-10 4.3E-15 82.4 10.2 75 1-83 6-85 (85)
174 cd05752 Ig1_FcgammaR_like Frst 99.2 9.9E-11 2.1E-15 81.1 7.9 60 97-164 8-68 (78)
175 cd05875 Ig6_hNeurofascin_like 99.2 1.9E-10 4.2E-15 79.7 9.1 65 107-171 1-72 (77)
176 cd05874 Ig6_NrCAM Sixth immuno 99.2 2E-10 4.4E-15 79.7 8.8 65 107-171 1-72 (77)
177 cd05750 Ig_Pro_neuregulin Immu 99.2 1.2E-10 2.6E-15 81.2 7.4 67 107-173 1-74 (75)
178 cd05733 Ig6_L1-CAM_like Sixth 99.2 1.9E-10 4E-15 80.1 8.3 65 107-171 1-72 (77)
179 cd05752 Ig1_FcgammaR_like Frst 99.2 1.3E-10 2.8E-15 80.5 6.9 56 1-71 12-68 (78)
180 cd05753 Ig2_FcgammaR_like Seco 99.1 1.3E-10 2.8E-15 81.9 6.8 65 1-77 11-76 (83)
181 cd07701 Ig1_Necl-3 First (N-te 99.1 2.1E-10 4.5E-15 83.2 8.0 80 1-82 9-94 (95)
182 cd05742 Ig1_VEGFR_like First i 99.1 2.4E-10 5.3E-15 81.3 7.8 73 104-176 1-83 (84)
183 smart00408 IGc2 Immunoglobulin 99.1 4.3E-10 9.2E-15 75.4 8.6 63 3-73 1-63 (63)
184 cd04967 Ig1_Contactin First Ig 99.1 5.8E-10 1.3E-14 80.7 9.7 67 103-170 18-87 (91)
185 cd05871 Ig_Semaphorin_classIII 99.1 5.9E-10 1.3E-14 79.9 9.4 78 2-84 9-89 (91)
186 cd05896 Ig1_IL1RAPL-1_like Fir 99.1 5.3E-10 1.1E-14 79.7 8.8 82 1-83 12-104 (104)
187 cd05757 Ig2_IL1R_like Second i 99.1 8.7E-10 1.9E-14 79.0 9.6 77 99-176 5-86 (92)
188 cd05754 Ig3_Perlecan_like Thir 99.1 6.7E-10 1.5E-14 79.3 8.9 75 97-174 9-84 (85)
189 cd05729 Ig2_FGFR_like Second i 99.1 1.4E-09 3.1E-14 77.9 10.7 78 99-176 4-85 (85)
190 cd05727 Ig2_Contactin-2-like S 99.1 4.9E-10 1.1E-14 79.8 7.9 71 97-167 11-85 (96)
191 cd05727 Ig2_Contactin-2-like S 99.1 2.4E-10 5.2E-15 81.4 6.3 69 1-74 15-85 (96)
192 cd05862 Ig1_VEGFR First immuno 99.1 9.7E-10 2.1E-14 78.0 9.2 80 4-84 1-85 (86)
193 cd05845 Ig2_L1-CAM_like Second 99.1 5.7E-10 1.2E-14 79.3 7.7 70 97-166 11-83 (95)
194 cd04979 Ig_Semaphorin_C Immuno 99.1 2.1E-09 4.5E-14 77.5 10.6 79 97-177 4-87 (89)
195 cd07701 Ig1_Necl-3 First (N-te 99.1 1.1E-09 2.5E-14 79.3 9.1 80 96-176 4-95 (95)
196 cd05861 Ig1_PDGFR-alphabeta Fr 99.1 1.1E-09 2.4E-14 77.5 8.9 74 104-177 1-83 (84)
197 cd05882 Ig1_Necl-1 First (N-te 99.1 2.4E-09 5.1E-14 77.3 10.6 79 96-175 4-94 (95)
198 cd05885 Ig2_Necl-4 Second immu 99.1 1.6E-09 3.4E-14 74.2 9.1 68 6-75 1-69 (80)
199 cd07690 Ig1_CD4 First immunogl 99.0 6.6E-10 1.4E-14 79.5 6.4 73 1-74 4-90 (94)
200 cd05895 Ig_Pro_neuregulin-1 Im 99.0 8.4E-10 1.8E-14 76.8 6.8 67 107-173 1-75 (76)
201 cd05898 Ig5_KIRREL3 Fifth immu 99.0 4.6E-09 9.9E-14 75.6 10.7 78 97-174 9-97 (98)
202 cd05717 Ig1_Necl-1-3_like Firs 99.0 1.8E-09 3.9E-14 78.9 8.9 81 1-83 9-95 (95)
203 cd05872 Ig_Sema4B_like Immunog 99.0 1.7E-09 3.6E-14 75.3 7.8 60 1-69 8-67 (85)
204 cd05753 Ig2_FcgammaR_like Seco 99.0 2.8E-09 6E-14 75.1 8.5 67 99-170 9-76 (83)
205 smart00408 IGc2 Immunoglobulin 99.0 3.6E-09 7.8E-14 70.8 8.7 63 103-166 1-63 (63)
206 PF00041 fn3: Fibronectin type 99.0 6.3E-09 1.4E-13 74.6 9.4 83 281-373 2-85 (85)
207 cd05898 Ig5_KIRREL3 Fifth immu 99.0 5.7E-09 1.2E-13 75.1 8.9 74 2-81 14-97 (98)
208 cd05845 Ig2_L1-CAM_like Second 98.9 1.9E-09 4E-14 76.7 5.7 65 1-72 15-82 (95)
209 cd05897 Ig2_IL1R2_like Second 98.9 7.1E-09 1.5E-13 74.0 8.6 68 1-75 7-81 (95)
210 cd05860 Ig4_SCFR Fourth immuno 98.9 1.1E-08 2.5E-13 72.7 8.8 83 1-84 15-100 (101)
211 cd05871 Ig_Semaphorin_classIII 98.9 2E-08 4.4E-13 71.9 9.8 78 98-177 5-89 (91)
212 PF00047 ig: Immunoglobulin do 98.9 2.5E-09 5.5E-14 71.7 4.9 57 4-68 1-64 (64)
213 cd05717 Ig1_Necl-1-3_like Firs 98.9 2.1E-08 4.5E-13 73.2 9.5 79 96-175 4-94 (95)
214 PF13895 Ig_2: Immunoglobulin 98.9 9.2E-09 2E-13 72.7 7.4 69 1-83 11-80 (80)
215 smart00410 IG_like Immunoglobu 98.9 4.1E-08 8.9E-13 70.4 10.9 75 1-83 6-85 (86)
216 smart00409 IG Immunoglobulin. 98.9 4.1E-08 8.9E-13 70.4 10.9 75 1-83 6-85 (86)
217 KOG0196|consensus 98.8 3.6E-07 7.7E-12 87.5 19.0 133 239-384 396-537 (996)
218 smart00409 IG Immunoglobulin. 98.8 7.3E-08 1.6E-12 69.1 11.4 79 98-176 3-85 (86)
219 smart00410 IG_like Immunoglobu 98.8 7.3E-08 1.6E-12 69.1 11.4 79 98-176 3-85 (86)
220 PF00047 ig: Immunoglobulin do 98.8 7.2E-09 1.6E-13 69.4 5.4 58 104-161 1-64 (64)
221 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 4.3E-08 9.4E-13 70.0 9.0 78 99-176 10-104 (104)
222 cd00063 FN3 Fibronectin type 3 98.8 5.5E-08 1.2E-12 70.9 9.5 89 389-482 3-91 (93)
223 cd05862 Ig1_VEGFR First immuno 98.8 7.1E-08 1.5E-12 68.5 9.3 82 195-276 1-85 (86)
224 cd05860 Ig4_SCFR Fourth immuno 98.8 1E-07 2.3E-12 67.9 9.7 81 97-177 11-100 (101)
225 cd05759 Ig2_KIRREL3-like Secon 98.8 7.2E-08 1.6E-12 68.1 9.1 68 6-74 1-71 (82)
226 PF13895 Ig_2: Immunoglobulin 98.8 5.2E-08 1.1E-12 68.8 8.0 71 99-176 9-80 (80)
227 PHA03376 BARF1; Provisional 98.7 8.3E-08 1.8E-12 74.9 9.4 114 2-127 24-162 (221)
228 cd05897 Ig2_IL1R2_like Second 98.7 8.4E-08 1.8E-12 68.5 8.8 73 99-171 5-84 (95)
229 cd05872 Ig_Sema4B_like Immunog 98.7 1.2E-07 2.6E-12 66.0 9.3 63 98-162 5-67 (85)
230 KOG4802|consensus 98.7 2.1E-07 4.5E-12 81.5 12.3 136 345-484 210-352 (516)
231 cd07690 Ig1_CD4 First immunogl 98.7 8.1E-08 1.8E-12 68.8 7.7 69 100-168 3-91 (94)
232 cd05881 Ig1_Necl-2 First (N-te 98.7 1.6E-07 3.4E-12 67.2 9.1 69 1-70 9-83 (95)
233 cd05774 Ig_CEACAM_D1 First imm 98.7 1.5E-07 3.2E-12 69.1 9.2 71 1-72 10-93 (105)
234 cd05741 Ig_CEACAM_D1_like Firs 98.7 1E-07 2.3E-12 69.2 8.3 70 4-74 1-82 (92)
235 cd05877 Ig_LP_like Immunoglobu 98.7 2E-07 4.4E-12 69.7 9.8 82 3-85 1-104 (106)
236 cd05885 Ig2_Necl-4 Second immu 98.7 1.5E-07 3.2E-12 64.6 8.1 62 107-168 2-69 (80)
237 cd05714 Ig_CSPGs_LP Immunoglob 98.6 2.8E-07 6E-12 68.9 9.6 82 3-85 1-104 (106)
238 cd05883 Ig2_Necl-2 Second immu 98.6 4.6E-07 1E-11 62.3 9.2 78 6-84 1-80 (82)
239 cd05751 Ig1_LILRB1_like First 98.6 1.3E-07 2.8E-12 68.2 6.6 63 1-71 13-75 (91)
240 cd05900 Ig_Aggrecan Immunoglob 98.6 6.9E-07 1.5E-11 66.4 10.6 82 3-85 1-110 (112)
241 cd05881 Ig1_Necl-2 First (N-te 98.6 1E-06 2.2E-11 63.1 11.0 67 97-163 5-83 (95)
242 cd05878 Ig_Aggrecan_like Immun 98.6 3.4E-07 7.3E-12 68.4 8.9 82 3-85 1-108 (110)
243 cd05751 Ig1_LILRB1_like First 98.6 1.8E-07 3.9E-12 67.4 6.5 65 99-164 11-75 (91)
244 cd05713 Ig_MOG_like Immunoglob 98.6 7.8E-07 1.7E-11 65.7 9.9 79 4-83 1-99 (100)
245 cd05774 Ig_CEACAM_D1 First imm 98.6 5.9E-07 1.3E-11 65.9 8.9 67 100-166 9-94 (105)
246 cd05775 Ig_SLAM-CD84_like_N N- 98.6 2.3E-07 4.9E-12 67.7 6.6 81 2-83 2-96 (97)
247 PHA02987 Ig domain OX-2-like p 98.5 4.9E-07 1.1E-11 71.4 8.1 84 1-85 27-123 (189)
248 cd05846 Ig1_MRC-OX-2_like Firs 98.5 1.4E-06 3.1E-11 63.7 9.6 79 4-83 1-96 (97)
249 cd05718 Ig1_PVR_like First imm 98.5 1.6E-06 3.4E-11 63.8 10.0 78 5-83 1-97 (98)
250 cd05759 Ig2_KIRREL3-like Secon 98.5 1E-06 2.3E-11 62.2 8.5 63 107-169 2-73 (82)
251 cd05886 Ig1_Nectin-1_like Firs 98.5 1.8E-06 3.8E-11 62.7 9.7 79 5-84 1-99 (99)
252 cd05879 Ig_P0 Immunoglobulin ( 98.5 1.6E-06 3.5E-11 65.0 9.2 69 2-73 11-104 (116)
253 cd05741 Ig_CEACAM_D1_like Firs 98.4 1.4E-06 3E-11 63.2 8.5 64 104-167 1-82 (92)
254 cd05887 Ig1_Nectin-3_like Firs 98.4 3.3E-06 7.1E-11 60.6 9.8 78 5-83 1-95 (96)
255 cd04983 IgV_TCR_alpha_like Imm 98.4 9.2E-07 2E-11 66.6 7.3 71 1-72 10-93 (109)
256 cd05901 Ig_Versican Immunoglob 98.4 2.9E-06 6.3E-11 62.8 9.3 81 4-85 2-115 (117)
257 cd00098 IgC Immunoglobulin Con 98.4 1.4E-06 3.1E-11 63.7 7.2 69 3-73 12-86 (95)
258 cd05888 Ig1_Nectin-4_like Frst 98.4 7.5E-06 1.6E-10 60.1 10.8 78 5-83 1-99 (100)
259 cd05902 Ig_Neurocan Immunoglob 98.4 3.5E-06 7.7E-11 62.3 8.8 81 4-85 2-108 (110)
260 PF13927 Ig_3: Immunoglobulin 98.4 1.9E-07 4.1E-12 64.9 1.9 60 104-163 15-75 (75)
261 cd05711 Ig_FcalphaRI Immunoglo 98.3 2.9E-06 6.4E-11 61.3 7.9 64 1-69 12-75 (94)
262 cd05880 Ig_EVA1 Immunoglobulin 98.3 5E-06 1.1E-10 62.8 9.4 72 1-73 10-103 (115)
263 smart00060 FN3 Fibronectin typ 98.3 3.8E-06 8.3E-11 59.2 8.4 78 389-474 3-83 (83)
264 cd05761 Ig2_Necl-1-4_like Seco 98.3 5.8E-06 1.2E-10 58.1 8.7 68 6-74 1-70 (82)
265 cd04984 IgV_L_lambda Immunoglo 98.3 4.5E-06 9.7E-11 61.2 8.4 69 1-70 3-84 (98)
266 cd05714 Ig_CSPGs_LP Immunoglob 98.3 4.9E-06 1.1E-10 62.1 8.8 75 103-177 1-103 (106)
267 cd05755 Ig2_ICAM-1_like Second 98.3 4.7E-06 1E-10 60.0 8.1 70 1-72 13-85 (100)
268 cd05899 IgV_TCR_beta Immunoglo 98.3 2.3E-06 5.1E-11 64.3 6.8 69 1-71 10-94 (110)
269 cd00099 IgV Immunoglobulin var 98.3 1.7E-06 3.6E-11 64.7 5.9 72 1-73 3-91 (105)
270 cd04980 IgV_L_kappa Immunoglob 98.3 3.9E-06 8.5E-11 62.6 7.9 69 1-70 12-92 (106)
271 cd05879 Ig_P0 Immunoglobulin ( 98.3 9.3E-06 2E-10 60.9 9.8 72 97-168 6-106 (116)
272 cd07705 Ig2_Necl-1 Second immu 98.3 1E-05 2.2E-10 56.9 9.2 66 7-73 2-70 (83)
273 cd05883 Ig2_Necl-2 Second immu 98.2 8.9E-06 1.9E-10 56.0 8.1 59 107-165 2-67 (82)
274 cd04983 IgV_TCR_alpha_like Imm 98.2 6.3E-06 1.4E-10 62.0 8.2 69 97-165 6-93 (109)
275 PHA03376 BARF1; Provisional 98.2 1.3E-05 2.8E-10 63.0 9.9 119 98-219 20-161 (221)
276 cd07694 Ig2_CD4 Second immunog 98.2 1.2E-05 2.7E-10 55.1 8.5 74 100-176 10-85 (88)
277 cd05884 Ig2_Necl-3 Second immu 98.2 8.5E-06 1.8E-10 57.1 8.2 67 7-74 2-71 (83)
278 cd05900 Ig_Aggrecan Immunoglob 98.2 1.1E-05 2.4E-10 60.1 9.1 75 103-177 1-109 (112)
279 cd05713 Ig_MOG_like Immunoglob 98.2 8.8E-06 1.9E-10 60.0 8.6 73 104-176 1-99 (100)
280 cd05715 Ig_P0-like Immunoglobu 98.2 8.9E-06 1.9E-10 61.7 8.7 72 1-73 10-104 (116)
281 PF13927 Ig_3: Immunoglobulin 98.2 8.7E-07 1.9E-11 61.5 2.9 58 6-70 17-75 (75)
282 cd05775 Ig_SLAM-CD84_like_N N- 98.2 7.7E-06 1.7E-10 59.6 7.9 75 102-176 2-96 (97)
283 cd05877 Ig_LP_like Immunoglobu 98.2 1.1E-05 2.3E-10 60.3 8.7 75 103-177 1-103 (106)
284 TIGR00864 PCC polycystin catio 98.2 0.024 5.2E-07 63.9 39.8 235 2-277 1710-1950(2740)
285 cd05878 Ig_Aggrecan_like Immun 98.2 1.7E-05 3.6E-10 59.3 8.8 75 103-177 1-107 (110)
286 cd05718 Ig1_PVR_like First imm 98.1 1.8E-05 3.9E-10 58.2 8.2 72 105-176 1-97 (98)
287 cd05899 IgV_TCR_beta Immunoglo 98.1 1.7E-05 3.6E-10 59.6 8.1 67 97-164 6-94 (110)
288 cd00099 IgV Immunoglobulin var 98.1 9.2E-06 2E-10 60.7 6.6 67 100-166 2-91 (105)
289 cd07694 Ig2_CD4 Second immunog 98.1 2E-05 4.3E-10 54.1 7.3 73 2-84 12-86 (88)
290 cd04980 IgV_L_kappa Immunoglob 98.1 2.7E-05 5.9E-10 58.1 9.0 68 97-164 8-93 (106)
291 cd04982 IgV_TCR_gamma Immunogl 98.1 1E-05 2.2E-10 61.6 6.4 69 1-70 10-98 (116)
292 cd00063 FN3 Fibronectin type 3 98.1 7.7E-05 1.7E-09 53.8 10.9 86 280-374 2-87 (93)
293 KOG4258|consensus 98.0 4.7E-05 1E-09 73.8 11.3 141 285-430 494-652 (1025)
294 cd07706 IgV_TCR_delta Immunogl 98.0 1.5E-05 3.3E-10 60.6 6.5 69 1-70 11-93 (116)
295 cd05889 Ig1_DNAM-1_like First 98.0 5.5E-05 1.2E-09 54.4 9.0 75 5-80 1-92 (96)
296 PF07686 V-set: Immunoglobulin 98.0 9.2E-06 2E-10 61.8 5.3 70 1-71 13-101 (114)
297 KOG4367|consensus 98.0 8.8E-06 1.9E-10 71.9 5.2 85 396-487 448-532 (699)
298 cd05886 Ig1_Nectin-1_like Firs 98.0 7.1E-05 1.5E-09 54.3 9.1 71 106-176 2-98 (99)
299 KOG0613|consensus 98.0 5.1E-05 1.1E-09 77.3 11.1 405 49-477 279-715 (1205)
300 cd05880 Ig_EVA1 Immunoglobulin 98.0 4.3E-05 9.4E-10 57.7 8.3 72 96-167 5-104 (115)
301 cd04984 IgV_L_lambda Immunoglo 98.0 5.5E-05 1.2E-09 55.4 8.6 64 100-163 2-84 (98)
302 cd05887 Ig1_Nectin-3_like Firs 98.0 7.7E-05 1.7E-09 53.6 8.9 72 105-176 1-95 (96)
303 cd05716 Ig_pIgR Immunoglobulin 98.0 2.9E-05 6.2E-10 57.0 6.7 70 1-71 4-86 (98)
304 cd05720 Ig_CD8_alpha Immunoglo 98.0 2.3E-05 5E-10 58.0 6.1 68 1-69 3-89 (104)
305 cd05711 Ig_FcalphaRI Immunoglo 98.0 3.3E-05 7.2E-10 55.8 6.8 64 99-163 10-76 (94)
306 PHA02987 Ig domain OX-2-like p 98.0 0.0001 2.2E-09 58.6 9.7 82 98-179 24-124 (189)
307 KOG4152|consensus 98.0 2.8E-05 6.1E-10 70.8 7.6 127 350-482 653-794 (830)
308 cd00098 IgC Immunoglobulin Con 97.9 2.6E-05 5.7E-10 56.9 6.2 65 102-166 11-86 (95)
309 cd05755 Ig2_ICAM-1_like Second 97.9 3.6E-05 7.9E-10 55.4 6.6 67 101-167 13-87 (100)
310 cd05772 IgC_SIRP Signal-regula 97.9 0.00014 3E-09 54.1 9.7 68 2-72 19-92 (111)
311 PHA03271 envelope glycoprotein 97.9 0.0069 1.5E-07 54.2 21.4 159 49-222 208-386 (490)
312 PHA03273 envelope glycoprotein 97.9 0.0076 1.6E-07 55.0 22.0 158 49-220 199-376 (486)
313 TIGR00864 PCC polycystin catio 97.9 0.074 1.6E-06 60.2 38.0 233 3-278 1355-1594(2740)
314 cd05761 Ig2_Necl-1-4_like Seco 97.9 5.6E-05 1.2E-09 53.1 7.2 61 107-167 2-70 (82)
315 cd05712 Ig_Siglec_N Immunoglob 97.9 0.00014 3E-09 55.4 9.9 69 1-70 11-101 (119)
316 cd04982 IgV_TCR_gamma Immunogl 97.9 4.9E-05 1.1E-09 57.8 7.3 68 96-163 5-98 (116)
317 cd05846 Ig1_MRC-OX-2_like Firs 97.9 0.00011 2.4E-09 53.6 8.7 73 104-176 1-96 (97)
318 cd05888 Ig1_Nectin-4_like Frst 97.9 8.1E-05 1.8E-09 54.6 8.0 71 106-176 2-99 (100)
319 cd05884 Ig2_Necl-3 Second immu 97.9 9.3E-05 2E-09 51.9 7.8 61 107-167 2-71 (83)
320 smart00407 IGc1 Immunoglobulin 97.9 0.00011 2.4E-09 50.5 8.1 65 6-72 1-71 (75)
321 cd07700 IgV_CD8_beta Immunoglo 97.9 6.6E-05 1.4E-09 56.0 7.4 68 1-69 3-92 (107)
322 PHA03270 envelope glycoprotein 97.9 0.0072 1.6E-07 54.6 20.8 159 49-223 183-361 (466)
323 cd05902 Ig_Neurocan Immunoglob 97.9 0.0001 2.3E-09 54.6 8.0 74 104-177 2-107 (110)
324 cd05772 IgC_SIRP Signal-regula 97.8 0.00017 3.7E-09 53.6 9.0 87 179-265 5-93 (111)
325 cd05901 Ig_Versican Immunoglob 97.8 0.00026 5.6E-09 52.6 9.8 36 142-177 79-114 (117)
326 cd05847 IgC_CH2_IgE CH2 domain 97.8 0.00013 2.7E-09 52.5 8.0 68 4-73 14-87 (94)
327 cd07699 IgC_L Immunoglobulin C 97.8 7.8E-05 1.7E-09 54.5 7.1 68 3-72 16-89 (100)
328 cd05715 Ig_P0-like Immunoglobu 97.8 0.00015 3.3E-09 55.0 8.9 70 97-166 6-104 (116)
329 cd00096 Ig Immunoglobulin doma 97.8 0.00012 2.5E-09 49.9 7.6 65 7-72 1-66 (74)
330 cd07705 Ig2_Necl-1 Second immu 97.8 0.00017 3.8E-09 50.6 8.0 60 107-166 2-70 (83)
331 PF07686 V-set: Immunoglobulin 97.8 0.00012 2.7E-09 55.4 7.7 68 97-164 9-101 (114)
332 PHA03269 envelope glycoprotein 97.8 0.0038 8.1E-08 57.1 17.5 159 49-222 290-470 (566)
333 PF08205 C2-set_2: CD80-like C 97.7 4.9E-05 1.1E-09 54.6 4.7 69 4-74 14-86 (89)
334 cd05766 IgC_MHC_II_beta Class 97.7 0.00039 8.4E-09 50.1 8.4 67 2-73 12-84 (94)
335 cd05716 Ig_pIgR Immunoglobulin 97.7 0.00037 8.1E-09 51.0 8.5 67 99-165 2-87 (98)
336 PF09294 Interfer-bind: Interf 97.7 0.0002 4.4E-09 53.4 7.1 90 388-484 4-105 (106)
337 cd05770 IgC_beta2m Class I maj 97.6 0.0004 8.7E-09 49.6 8.0 65 2-72 13-83 (93)
338 cd04981 IgV_H Immunoglobulin ( 97.6 0.00015 3.1E-09 55.0 5.9 69 1-70 9-97 (117)
339 cd05769 IgC_TCR_beta T cell re 97.6 0.0004 8.7E-09 51.8 8.0 73 3-76 17-96 (115)
340 cd05768 IgC_CH4 CH4 domain (fo 97.6 0.00031 6.8E-09 51.4 7.4 69 2-72 14-91 (102)
341 PF01108 Tissue_fac: Tissue fa 97.6 0.00034 7.4E-09 52.0 7.5 86 383-474 18-105 (107)
342 cd07700 IgV_CD8_beta Immunoglo 97.6 0.00045 9.8E-09 51.5 8.0 64 100-163 2-93 (107)
343 KOG4258|consensus 97.5 6.7E-05 1.4E-09 72.8 3.8 132 345-482 783-920 (1025)
344 cd05889 Ig1_DNAM-1_like First 97.5 0.0015 3.2E-08 47.0 9.8 70 105-174 1-93 (96)
345 cd07698 IgC_MHC_I_alpha3 Class 97.5 0.00064 1.4E-08 49.1 8.1 64 4-72 14-83 (93)
346 smart00060 FN3 Fibronectin typ 97.5 0.0015 3.3E-08 45.5 10.0 77 281-369 3-82 (83)
347 cd00096 Ig Immunoglobulin doma 97.5 0.00043 9.2E-09 46.9 6.9 59 107-165 1-66 (74)
348 cd07696 IgC_CH3 CH3 domain (th 97.5 0.00072 1.6E-08 48.8 7.5 69 2-72 12-86 (96)
349 cd05767 IgC_MHC_II_alpha Class 97.5 0.0012 2.5E-08 47.4 8.5 65 3-72 14-84 (94)
350 cd07697 IgC_TCR_gamma T cell r 97.5 0.0012 2.5E-08 47.5 8.4 66 3-72 15-85 (96)
351 cd05768 IgC_CH4 CH4 domain (fo 97.5 0.00048 1E-08 50.5 6.5 74 192-265 13-92 (102)
352 smart00406 IGv Immunoglobulin 97.4 0.00019 4.2E-09 50.4 4.3 62 6-68 1-81 (81)
353 cd07691 Ig_CD3_gamma_delta Imm 97.4 0.00045 9.8E-09 44.7 5.2 50 3-70 5-54 (69)
354 cd07706 IgV_TCR_delta Immunogl 97.4 0.00079 1.7E-08 51.1 7.3 67 97-163 7-93 (116)
355 cd07704 Ig2_Nectin-3-4_like Se 97.4 0.00094 2E-08 47.7 6.8 71 1-73 13-85 (97)
356 PHA02633 hypothetical protein; 97.3 0.00062 1.4E-08 42.8 4.9 39 46-85 16-54 (63)
357 cd05720 Ig_CD8_alpha Immunoglo 97.3 0.00084 1.8E-08 49.6 6.7 62 101-162 3-89 (104)
358 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.001 2.2E-08 43.1 6.1 50 103-163 5-54 (69)
359 cd07698 IgC_MHC_I_alpha3 Class 97.3 0.0016 3.5E-08 47.0 7.8 68 195-265 14-84 (93)
360 cd07699 IgC_L Immunoglobulin C 97.3 0.00089 1.9E-08 49.0 6.3 71 192-265 14-90 (100)
361 smart00407 IGc1 Immunoglobulin 97.3 0.0021 4.7E-08 44.1 7.8 67 198-264 2-71 (75)
362 cd05847 IgC_CH2_IgE CH2 domain 97.3 0.0015 3.4E-08 46.9 7.2 73 194-266 13-88 (94)
363 cd05719 Ig2_PVR_like Second im 97.2 0.0021 4.6E-08 46.2 7.5 68 5-74 16-84 (95)
364 PF07654 C1-set: Immunoglobuli 97.2 0.0012 2.6E-08 46.5 6.1 67 2-73 6-78 (83)
365 cd05769 IgC_TCR_beta T cell re 97.2 0.0022 4.8E-08 47.9 7.7 75 194-268 17-96 (115)
366 cd05712 Ig_Siglec_N Immunoglob 97.2 0.003 6.4E-08 48.1 8.6 68 97-164 7-102 (119)
367 cd04981 IgV_H Immunoglobulin ( 97.2 0.0016 3.5E-08 49.3 6.9 67 97-163 5-97 (117)
368 cd07703 Ig2_Nectin-2_like Seco 97.2 0.0018 4E-08 46.4 6.7 69 5-75 16-85 (95)
369 cd07692 Ig_CD3_epsilon Immunog 97.2 0.00096 2.1E-08 43.0 4.6 50 3-70 6-55 (65)
370 cd07692 Ig_CD3_epsilon Immunog 97.2 0.0018 4E-08 41.7 5.8 52 101-163 4-55 (65)
371 cd04986 IgC_CH2 CH2 domain (se 97.1 0.0014 3.1E-08 47.1 5.7 75 190-265 14-90 (99)
372 cd05766 IgC_MHC_II_beta Class 97.1 0.0029 6.3E-08 45.6 7.4 69 194-265 13-84 (94)
373 cd07689 Ig2_VCAM-1 Second immu 97.1 0.0022 4.9E-08 45.5 6.4 67 1-69 12-83 (99)
374 PF09067 EpoR_lig-bind: Erythr 97.1 0.0044 9.5E-08 45.2 8.0 85 385-473 6-95 (104)
375 cd04985 IgC_CH1 CH1 domain (fi 97.1 0.0036 7.9E-08 45.1 7.6 66 4-72 16-87 (95)
376 cd05770 IgC_beta2m Class I maj 97.1 0.0034 7.4E-08 44.9 7.1 67 194-264 14-83 (93)
377 cd05767 IgC_MHC_II_alpha Class 97.0 0.0026 5.7E-08 45.6 6.4 67 194-264 14-84 (94)
378 cd04986 IgC_CH2 CH2 domain (se 97.0 0.0025 5.3E-08 45.9 6.2 68 3-73 18-90 (99)
379 cd07697 IgC_TCR_gamma T cell r 97.0 0.0028 6.2E-08 45.6 6.4 34 192-225 13-46 (96)
380 cd05721 IgV_CTLA-4 Immunoglobu 96.9 0.0059 1.3E-07 44.9 7.1 67 1-68 10-93 (115)
381 KOG1480|consensus 96.9 0.00029 6.2E-09 67.8 0.3 170 2-176 37-218 (909)
382 PF08205 C2-set_2: CD80-like C 96.8 0.0045 9.7E-08 44.3 6.1 64 104-167 14-86 (89)
383 cd07696 IgC_CH3 CH3 domain (th 96.8 0.0051 1.1E-07 44.4 6.3 73 189-265 8-87 (96)
384 PF07654 C1-set: Immunoglobuli 96.8 0.0046 9.9E-08 43.5 6.0 69 195-266 8-79 (83)
385 cd07704 Ig2_Nectin-3-4_like Se 96.6 0.018 3.8E-07 41.3 8.0 69 97-166 9-85 (97)
386 cd04985 IgC_CH1 CH1 domain (fi 96.6 0.017 3.6E-07 41.7 7.8 70 194-264 15-87 (95)
387 PHA02633 hypothetical protein; 96.6 0.0076 1.7E-07 38.1 5.1 40 140-179 16-55 (63)
388 smart00406 IGv Immunoglobulin 96.6 0.0052 1.1E-07 42.9 5.2 56 106-161 1-81 (81)
389 PHA03042 CD47-like protein; Pr 96.5 0.011 2.3E-07 50.0 6.8 67 4-81 31-102 (286)
390 PF10179 DUF2369: Uncharacteri 96.3 0.7 1.5E-05 40.9 24.6 137 341-484 126-296 (300)
391 cd05719 Ig2_PVR_like Second im 96.3 0.028 6.1E-07 40.5 7.4 65 104-169 15-86 (95)
392 cd07703 Ig2_Nectin-2_like Seco 96.1 0.02 4.4E-07 41.1 5.8 67 105-172 16-89 (95)
393 PF08204 V-set_CD47: CD47 immu 96.1 0.011 2.5E-07 44.5 4.5 75 101-176 24-119 (130)
394 PHA02982 hypothetical protein; 95.9 0.07 1.5E-06 43.2 8.4 118 2-129 37-173 (251)
395 PF01108 Tissue_fac: Tissue fa 95.9 0.1 2.2E-06 38.8 9.0 82 278-370 21-105 (107)
396 PHA03269 envelope glycoprotein 95.9 1.6 3.4E-05 40.8 18.4 80 143-225 290-373 (566)
397 KOG1480|consensus 95.9 0.004 8.7E-08 60.3 1.6 77 1-84 141-219 (909)
398 PHA03271 envelope glycoprotein 95.8 1.1 2.4E-05 40.9 16.1 121 143-266 208-337 (490)
399 cd07689 Ig2_VCAM-1 Second immu 95.7 0.046 9.9E-07 39.0 6.1 63 101-164 12-85 (99)
400 PF07354 Sp38: Zona-pellucida- 95.7 0.016 3.5E-07 48.9 4.5 47 118-164 12-59 (271)
401 PF08204 V-set_CD47: CD47 immu 95.7 0.016 3.5E-07 43.7 3.9 82 194-276 26-120 (130)
402 PHA03270 envelope glycoprotein 95.6 1.3 2.7E-05 40.8 15.9 81 142-225 182-265 (466)
403 KOG4597|consensus 95.6 0.021 4.5E-07 52.2 5.0 83 1-85 208-293 (560)
404 PF07354 Sp38: Zona-pellucida- 95.6 0.023 4.9E-07 48.0 4.8 46 17-70 11-58 (271)
405 PHA03273 envelope glycoprotein 95.5 0.83 1.8E-05 42.3 14.7 121 143-266 199-327 (486)
406 PF09067 EpoR_lig-bind: Erythr 95.3 0.15 3.3E-06 37.2 7.8 90 278-370 7-96 (104)
407 PHA03042 CD47-like protein; Pr 95.1 0.099 2.1E-06 44.5 7.0 72 101-176 28-104 (286)
408 cd05721 IgV_CTLA-4 Immunoglobu 95.1 0.18 3.9E-06 37.3 7.5 64 98-161 7-93 (115)
409 KOG4367|consensus 95.0 0.027 5.9E-07 50.6 3.9 79 291-381 451-529 (699)
410 KOG4228|consensus 94.7 0.19 4E-06 51.8 9.0 202 255-487 1-255 (1087)
411 PHA02914 Immunoglobulin-like d 94.6 0.44 9.5E-06 43.0 10.1 121 1-131 276-422 (500)
412 PHA02914 Immunoglobulin-like d 94.1 4.4 9.6E-05 36.9 22.3 124 189-328 273-418 (500)
413 PHA02982 hypothetical protein; 93.6 1.6 3.4E-05 35.8 10.5 115 99-222 34-173 (251)
414 PF10179 DUF2369: Uncharacteri 93.3 1.7 3.8E-05 38.5 11.3 27 446-472 126-152 (300)
415 COG3401 Fibronectin type 3 dom 93.2 0.99 2.1E-05 40.1 9.5 162 294-479 85-247 (343)
416 PLN02533 probable purple acid 93.2 1.6 3.5E-05 41.6 12.0 90 385-487 39-136 (427)
417 KOG4802|consensus 92.9 0.12 2.6E-06 46.6 3.6 84 389-482 147-246 (516)
418 KOG3632|consensus 92.6 0.83 1.8E-05 46.4 9.2 174 276-474 669-856 (1335)
419 PF11465 Receptor_2B4: Natural 92.4 2.1 4.5E-05 31.0 8.6 76 198-275 28-106 (108)
420 PF11465 Receptor_2B4: Natural 92.3 0.54 1.2E-05 33.9 5.6 37 141-177 70-107 (108)
421 KOG4597|consensus 92.1 0.31 6.7E-06 45.0 5.3 80 99-178 206-293 (560)
422 PF09240 IL6Ra-bind: Interleuk 91.6 4 8.7E-05 29.7 9.9 85 390-477 2-90 (99)
423 KOG0613|consensus 91.4 2.9 6.3E-05 44.3 11.9 182 275-476 136-319 (1205)
424 KOG4152|consensus 91.2 0.16 3.4E-06 47.3 2.6 34 453-486 652-685 (830)
425 PHA02865 MHC-like TNF binding 89.5 1.1 2.4E-05 40.2 6.3 21 6-26 216-238 (338)
426 PF06328 Lep_receptor_Ig: Ig-l 89.3 2.2 4.8E-05 30.2 6.5 62 99-161 13-81 (89)
427 PF07495 Y_Y_Y: Y_Y_Y domain; 89.2 1.5 3.3E-05 28.9 5.5 49 422-477 8-57 (66)
428 PF05790 C2-set: Immunoglobuli 89.1 5.5 0.00012 27.5 8.2 62 8-83 9-78 (80)
429 COG4733 Phage-related protein, 88.8 9.4 0.0002 38.7 12.3 122 343-478 660-787 (952)
430 PF05790 C2-set: Immunoglobuli 88.0 2.2 4.7E-05 29.5 5.6 38 118-162 26-63 (80)
431 PF09294 Interfer-bind: Interf 87.6 3.3 7.1E-05 30.5 7.0 67 285-363 8-86 (106)
432 PHA03052 Hypothetical protein; 87.1 2.4 5.2E-05 27.6 4.9 31 1-31 9-42 (69)
433 PF02010 REJ: REJ domain; Int 87.0 0.66 1.4E-05 44.9 3.7 312 6-328 2-353 (440)
434 PHA03286 envelope glycoprotein 86.7 28 0.0006 32.7 13.2 78 47-125 126-225 (492)
435 PF06328 Lep_receptor_Ig: Ig-l 85.8 0.66 1.4E-05 32.8 2.2 59 1-68 15-81 (89)
436 PF02124 Marek_A: Marek's dise 84.6 23 0.00049 29.7 12.7 138 18-162 6-158 (211)
437 PF02010 REJ: REJ domain; Int 84.5 1.6 3.5E-05 42.2 5.1 22 350-371 268-289 (440)
438 PF09423 PhoD: PhoD-like phosp 84.1 11 0.00024 36.6 10.6 48 447-497 63-116 (453)
439 KOG1026|consensus 84.0 4.3 9.4E-05 41.1 7.6 157 1-180 204-366 (774)
440 COG3401 Fibronectin type 3 dom 83.1 35 0.00076 30.8 15.7 196 251-475 134-333 (343)
441 PHA03189 UL14 tegument protein 80.9 19 0.0004 31.8 9.1 24 49-74 135-158 (348)
442 PF06832 BiPBP_C: Penicillin-B 80.1 18 0.0004 25.5 8.0 55 107-170 32-86 (89)
443 KOG4806|consensus 79.6 48 0.001 30.0 16.0 134 346-484 286-446 (454)
444 TIGR00868 hCaCC calcium-activa 78.0 98 0.0021 32.7 27.0 88 391-479 760-861 (863)
445 PHA03283 envelope glycoprotein 77.6 46 0.00099 32.1 11.3 37 142-178 134-170 (542)
446 PHA03052 Hypothetical protein; 77.3 13 0.00028 24.4 5.4 34 97-130 5-41 (69)
447 cd05890 Ig2_Nectin-1_like Seco 77.3 8.8 0.00019 27.2 5.1 59 106-167 22-89 (98)
448 PRK14081 triple tyrosine motif 75.9 95 0.0021 31.5 32.7 291 3-328 304-623 (667)
449 PHA03282 envelope glycoprotein 75.9 74 0.0016 30.2 12.1 25 140-164 122-146 (540)
450 KOG1026|consensus 75.6 5.1 0.00011 40.6 5.1 164 99-279 202-366 (774)
451 PF03921 ICAM_N: Intercellular 75.4 26 0.00057 24.9 8.2 77 97-181 11-90 (91)
452 PF02440 Adeno_E3_CR1: Adenovi 75.4 13 0.00028 24.2 5.2 21 1-25 2-22 (63)
453 PHA02865 MHC-like TNF binding 74.3 9 0.0002 34.7 5.8 23 197-219 216-238 (338)
454 PHA03283 envelope glycoprotein 74.2 38 0.00083 32.6 9.9 38 47-85 133-170 (542)
455 cd05890 Ig2_Nectin-1_like Seco 70.3 15 0.00033 26.1 4.9 71 8-82 24-97 (98)
456 PF11049 KSHV_K1: Glycoprotein 68.9 12 0.00025 24.3 3.7 55 8-84 2-56 (71)
457 PLN02533 probable purple acid 68.6 61 0.0013 31.2 10.4 79 278-362 40-121 (427)
458 KOG3632|consensus 67.3 2.5 5.4E-05 43.2 1.0 99 354-470 642-740 (1335)
459 PHA03240 envelope glycoprotein 66.3 11 0.00024 31.1 4.2 67 1-68 35-124 (258)
460 PF02124 Marek_A: Marek's dise 65.3 84 0.0018 26.5 16.3 95 119-222 7-116 (211)
461 PF09240 IL6Ra-bind: Interleuk 59.6 64 0.0014 23.3 11.0 83 282-371 2-88 (99)
462 PF03921 ICAM_N: Intercellular 58.6 64 0.0014 23.0 6.4 79 187-280 10-90 (91)
463 PHA03189 UL14 tegument protein 55.4 74 0.0016 28.3 7.4 19 148-166 139-157 (348)
464 PHA03112 IL-18 binding protein 55.4 69 0.0015 24.9 6.5 26 2-27 36-63 (141)
465 KOG1225|consensus 54.6 24 0.00053 34.4 5.0 109 341-465 415-524 (525)
466 PF10342 GPI-anchored: Ser-Thr 53.6 76 0.0017 22.3 8.5 63 400-467 12-78 (93)
467 PF13754 Big_3_4: Bacterial Ig 51.9 51 0.0011 20.6 4.6 26 451-477 17-42 (54)
468 PHA03286 envelope glycoprotein 50.0 2.4E+02 0.0052 27.0 12.7 36 142-177 127-163 (492)
469 PHA03282 envelope glycoprotein 47.5 52 0.0011 31.2 5.7 30 40-70 116-145 (540)
470 PF14292 SusE: SusE outer memb 46.6 1.3E+02 0.0027 22.8 7.6 31 398-430 42-73 (122)
471 KOG3834|consensus 46.2 31 0.00067 32.2 4.1 69 391-465 66-137 (462)
472 PF06832 BiPBP_C: Penicillin-B 45.8 1E+02 0.0023 21.6 7.0 55 6-76 31-85 (89)
473 PHA03112 IL-18 binding protein 45.4 87 0.0019 24.4 5.7 27 101-127 35-63 (141)
474 KOG0200|consensus 42.6 1.3E+02 0.0028 30.7 8.4 108 46-163 11-138 (609)
475 PF14509 GH97_C: Glycosyl-hydr 41.6 1.1E+02 0.0024 22.4 5.7 56 414-470 8-64 (103)
476 PF11344 DUF3146: Protein of u 41.2 18 0.00039 24.2 1.4 13 455-467 67-79 (80)
477 PF11141 DUF2914: Protein of u 40.6 1.1E+02 0.0023 20.2 5.7 59 19-83 7-65 (66)
478 cd01759 PLAT_PL PLAT/LH2 domai 37.2 1.6E+02 0.0035 22.0 6.0 23 450-472 35-57 (113)
479 PHA03281 envelope glycoprotein 35.2 4.1E+02 0.0089 26.2 9.5 39 46-85 296-335 (642)
480 PHA03281 envelope glycoprotein 31.0 5.3E+02 0.012 25.5 11.3 37 142-178 298-335 (642)
481 PHA03240 envelope glycoprotein 29.9 1.1E+02 0.0024 25.5 4.4 27 99-125 33-59 (258)
482 PRK14081 triple tyrosine motif 28.5 6.7E+02 0.015 25.9 37.2 369 58-473 252-653 (667)
483 KOG1378|consensus 28.4 5.5E+02 0.012 24.9 10.0 36 447-487 108-143 (452)
484 PF03404 Mo-co_dimer: Mo-co ox 27.8 1.7E+02 0.0037 22.6 5.0 54 423-477 45-109 (131)
485 PF01688 Herpes_gI: Alphaherpe 27.4 1.3E+02 0.0028 24.2 4.3 23 49-72 125-147 (161)
486 KOG1948|consensus 27.3 2.9E+02 0.0062 29.1 7.5 76 416-495 918-1008(1165)
487 PF07353 Uroplakin_II: Uroplak 26.1 1.1E+02 0.0024 24.2 3.7 25 446-470 100-124 (184)
488 PF01688 Herpes_gI: Alphaherpe 26.0 1.8E+02 0.0039 23.4 4.9 32 144-175 126-157 (161)
489 PF07532 Big_4: Bacterial Ig-l 25.4 1.5E+02 0.0033 18.8 3.8 29 381-409 8-38 (59)
490 COG3540 PhoD Phosphodiesterase 25.2 1.7E+02 0.0036 28.3 5.3 37 447-488 100-136 (522)
491 cd02114 bact_SorA_Moco sulfite 25.1 2.7E+02 0.0059 26.2 6.8 54 423-477 292-348 (367)
492 PHA02935 Hypothetical protein; 24.8 1.8E+02 0.004 23.8 4.8 91 20-114 68-165 (349)
493 KOG3611|consensus 24.0 1.5E+02 0.0032 30.9 5.2 62 6-70 571-633 (737)
494 cd02111 eukary_SO_Moco molybdo 22.8 1.9E+02 0.004 27.2 5.3 57 422-478 279-343 (365)
495 PF02480 Herpes_gE: Alphaherpe 21.8 94 0.002 30.0 3.2 77 142-218 89-189 (439)
496 cd02110 SO_family_Moco_dimer S 21.2 3.2E+02 0.0069 25.1 6.4 71 401-478 223-297 (317)
497 COG4733 Phage-related protein, 20.4 2.9E+02 0.0063 28.9 6.2 84 399-483 109-208 (952)
No 1
>KOG3513|consensus
Probab=100.00 E-value=9.4e-66 Score=494.39 Aligned_cols=482 Identities=38% Similarity=0.676 Sum_probs=424.6
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
..|++++|.|.+.|.|.+.|+|+|||.+|... ....++.+..+.|+|.+++ ..|+|.|.|.|.|..|...+++.|
T Consensus 344 ~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~----~r~~~~~i~~g~L~is~v~-~~dsg~YQC~A~Nk~G~i~anA~L 418 (1051)
T KOG3513|consen 344 DTGSNVTLECKASGKPNPTVKWLKNGEPLEPA----ERDPRYKIDDGTLIISNVQ-ESDSGVYQCIAENKYGTIYANAEL 418 (1051)
T ss_pred cCCCCeEEEEEecCCCCCceEEeeCCeecCcc----CCCcceEEeCCEEEEEecc-cccCeEEEeeeecccceEeeeeEE
Confidence 57999999999999999999999999999832 1334588999999999999 999999999999999999999999
Q ss_pred EEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEE
Q psy14886 82 RVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 82 ~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~ 161 (505)
.|.+.+|.|...+......+..|..+.|.|.+.+.|.+.+.|.++++.+..++++.+..+++|.|.+++++|+|.|+|.|
T Consensus 419 ~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A 498 (1051)
T KOG3513|consen 419 KVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVA 498 (1051)
T ss_pred EEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEE
Confidence 99998899999998888889999999999999999999999999988777889999999999999999999999999999
Q ss_pred EcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecC-
Q psy14886 162 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG- 240 (505)
Q Consensus 162 ~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~- 240 (505)
.|..|.......|.|.+++.+.. .+....+..|+.+.|.|.+..++.+++.|.|.++|..+...... ..+...+
T Consensus 499 ~N~~G~a~~~~~L~Vkd~tri~~-~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~----~~~~~~~~ 573 (1051)
T KOG3513|consen 499 ENKLGKAESTGNLIVKDATRITL-APSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDG----DHFEINDG 573 (1051)
T ss_pred EcccCccceEEEEEEecCceEEe-ccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCC----CceEEeCC
Confidence 99999999999999988888776 67888899999999999999999999999999999988653211 1222222
Q ss_pred ---CeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEE
Q psy14886 241 ---GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR 317 (505)
Q Consensus 241 ---~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~ 317 (505)
+-|.|.++.+.|.|.|.|.|....-+.+....+.|+++|.||..+.+..+..+++.|+|.++.+++.||..|.++.+
T Consensus 574 ~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~r 653 (1051)
T KOG3513|consen 574 SDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFR 653 (1051)
T ss_pred cCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEec
Confidence 34999999999999999999987777788888999999999999999999999999999999999999999999999
Q ss_pred eCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeec
Q psy14886 318 TNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 397 (505)
Q Consensus 318 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~ 397 (505)
......|..+. .++. ...+..+....+ |.|...|+|||.|.|..|.|.+|.++..+.|.+++|...|.++....
T Consensus 654 t~~~~~W~~v~-~vp~----~~~~~~sa~vv~-L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g 727 (1051)
T KOG3513|consen 654 TPFPGKWKAVT-TVPG----NITGDESATVVN-LSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGG 727 (1051)
T ss_pred CCCCCcceEee-ECCC----cccCccceeEEc-cCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccC
Confidence 99999999987 3331 111223466777 99999999999999999999999999999999999999999999999
Q ss_pred cccccEEEEEEeCCccccCCCCceEEEEEEEcCCC-CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCC
Q psy14886 398 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT-EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE 476 (505)
Q Consensus 398 ~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~ 476 (505)
...+.+.|.|+|++....||+-.+|+|.|+..+.. .|....+.... ....++......|++-|++.|+|+|..|.|+.
T Consensus 728 ~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d-~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~ 806 (1051)
T KOG3513|consen 728 GSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQD-QPRYVVSNESTEPFTPYEVKVQAINDQGEGPE 806 (1051)
T ss_pred CCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecccC-CceEEEcCCCCCCcceeEEEEEEecCCCCCCC
Confidence 99999999999999999999999999999999966 99988876643 34567777778889999999999999999999
Q ss_pred CceEEEeec------ceEEEEEEEeCceee
Q psy14886 477 SEVVTIWHD------PLVIISYVCQGDLKL 500 (505)
Q Consensus 477 s~~~~~~t~------p~~~~~~~~~~~~~~ 500 (505)
|+.+.+.+. +|......+.+.-.+
T Consensus 807 s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~ 836 (1051)
T KOG3513|consen 807 SQVTVGYSGEDEPPVAPTKLSAKPLSSSEV 836 (1051)
T ss_pred CceEEEEcCCCCCCCCCccceeecccCceE
Confidence 999999774 444444444444333
No 2
>KOG4221|consensus
Probab=100.00 E-value=1.2e-54 Score=415.58 Aligned_cols=461 Identities=24% Similarity=0.352 Sum_probs=360.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-eE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~~ 79 (505)
+..|+.+.|.|.+.+.|.+.+.|.||+.++.. ++..+...++.|.|.+++ ..|.|.|+|.+.+......+ .+
T Consensus 152 ~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~------~~r~i~lpsG~L~I~~~q-p~d~g~yrc~vt~g~~~r~S~~a 224 (1381)
T KOG4221|consen 152 LLYGQTALFSCEVNAEPVPTIMWLKNDQPLPL------DSRVIVLPSGALEISGLQ-PSDTGEYRCVVTGGASQRTSNEA 224 (1381)
T ss_pred EecCCcEEEEEEEcCccCceeEEecccccccC------CCcEEEcCCCcEEecccc-cCCCceEEEEEecCCcCCcccee
Confidence 35799999999999988889999999998873 333334578999999999 99999999999987655444 47
Q ss_pred EEEEEecCC-----CccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCC-cEEEeeCCCEEEcCCCCCC
Q psy14886 80 QLRVLTLKP-----SFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-RRKIFENGNLLISPVSRDD 153 (505)
Q Consensus 80 ~l~v~~~~p-----~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~-~~~~~~~~~l~i~~v~~~d 153 (505)
.|+|...+. .|... +....+.+|+++.|.|.+.+.|.|.|.|.+||..+..++ ++.+...+.|.|++++..|
T Consensus 225 ~ltv~s~~~~~~~~~fl~~--p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~d 302 (1381)
T KOG4221|consen 225 ELTVLSDPGALNKLVFLDE--PSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDD 302 (1381)
T ss_pred EEEecCCcccccceeeecC--CCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEecccccc
Confidence 777773221 12233 355778999999999999999999999999999987654 3444446789999999999
Q ss_pred CEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccC
Q psy14886 154 SGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELET 233 (505)
Q Consensus 154 ~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 233 (505)
+|.|+|+|.|......+.+.|.|..+|.+... +.......+.++.|.|.+.+.|.+ ++.|+++|..+..+++.....
T Consensus 303 Sg~YtC~Atn~~D~idasaev~V~a~P~~~~~-p~~l~A~e~~die~ec~~~g~p~p--~v~w~kNgd~~ipsdy~ki~~ 379 (1381)
T KOG4221|consen 303 SGKYTCRATNTNDSIDASAEVTVLAPPGFTKA-PTTLVAHESMDIEFECPVSGKPIP--TVRWYKNGDRIIPSDYFKIVG 379 (1381)
T ss_pred CceEEEEecCCCcccccceEEEEEcCCCCCCC-CcceeeeeccceeEeCCCCCCCcc--eEEEEecCcccCcccceEecC
Confidence 99999999998888888899999888877654 455666778999999999998655 667999988776654321100
Q ss_pred C---eeee------------------------------c-----------------------------------------
Q psy14886 234 P---NINI------------------------------D----------------------------------------- 239 (505)
Q Consensus 234 ~---~~~~------------------------------~----------------------------------------- 239 (505)
. .... .
T Consensus 380 ~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~ 459 (1381)
T KOG4221|consen 380 GGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNIS 459 (1381)
T ss_pred CCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcc
Confidence 0 0000 0
Q ss_pred ----------------------CCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEE
Q psy14886 240 ----------------------GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATI 297 (505)
Q Consensus 240 ----------------------~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l 297 (505)
+-...+.++.....+.+.|.|.|..|....+..|.|..+|+.|..+.....+...+.+
T Consensus 460 ~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v 539 (1381)
T KOG4221|consen 460 TYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILV 539 (1381)
T ss_pred eEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEE
Confidence 0112233333444444555556777777777777777777777667778888999999
Q ss_pred EeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCC
Q psy14886 298 QWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377 (505)
Q Consensus 298 ~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~ 377 (505)
.|++|..++++|++|.+.|...+.+.|.....+ ..++.+.+ |.+++.|.|+|.|.|+.|.|..|...
T Consensus 540 ~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n-----------~~e~ti~g-L~k~TeY~~~vvA~N~~G~g~sS~~i- 606 (1381)
T KOG4221|consen 540 TWEPPPFGNGPITGYKLFYSEDDTGKELRVENN-----------ATEYTING-LEKYTEYSIRVVAYNSAGSGVSSADI- 606 (1381)
T ss_pred EecCCCCCCCCceEEEEEEEcCCCCceEEEecC-----------ccEEEeec-CCCccceEEEEEEecCCCCCCCCCce-
Confidence 999999999999999999998877777776443 23555665 99999999999999999999877765
Q ss_pred CccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC-cEEEEeeecCceeeEEEEcCCcc
Q psy14886 378 QYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE-FQSETLKEYGNVGIAVVRIPSEF 456 (505)
Q Consensus 378 ~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~ 456 (505)
.+.|..+.|..||.|+++...++++|.|.|.+|++...+|.|++|+|+|+...... .....+.. ..+.+.+.+|+
T Consensus 607 ~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~----n~~~~l~~~Le 682 (1381)
T KOG4221|consen 607 TVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKG----NTTQYLFNGLE 682 (1381)
T ss_pred EEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeeccc----chhhhHhhcCC
Confidence 89999999999999999999999999999999999999999999999999776332 22222222 34567888899
Q ss_pred ceeeEEEEEEEecCCCCCCCCceEEEeecceEEE
Q psy14886 457 YYTEYEVKVQAINDVGPGPESEVVTIWHDPLVII 490 (505)
Q Consensus 457 p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~~~~ 490 (505)
|++.|.|||.|.|..|.|++|+++.+.|+-....
T Consensus 683 p~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~ 716 (1381)
T KOG4221|consen 683 PNTQYRVRISAMTVNGTGPASEWVSAETPESDLD 716 (1381)
T ss_pred CCceEEEEEEEeccCCCCCcccceeccCcccccc
Confidence 9999999999999999999999999988644433
No 3
>KOG3513|consensus
Probab=100.00 E-value=5.3e-51 Score=392.90 Aligned_cols=455 Identities=22% Similarity=0.319 Sum_probs=340.2
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCE-ECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGE-LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~-~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
..|+.|.|.|.+.|+|.|+|.|.|.+. ++. ...++...+.+|.|.+++ .+|+|.|+|.|.|..|.......
T Consensus 254 ~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~-------~r~~~~~~~~vL~I~nv~-~~D~G~Y~C~AeN~~G~~~~~~~ 325 (1051)
T KOG3513|consen 254 LKGQSVKLECFALGNPTPQIKWRKVDGKPPP-------RRATYSNYGKVLKIPNVQ-YEDAGEYECIAENSRGSATHSGH 325 (1051)
T ss_pred cCCCeEEEEEEecCCCCCcEEEEeCCCCCCC-------cceeeeccccEEEecccC-cCCCeEEEEEEecccccceeeEE
Confidence 379999999999999999999999776 444 334445567899999999 99999999999999998888999
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCc--EEEeeCCCEEEcCCCCCCCEEEE
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGNLLISPVSRDDSGIYS 158 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~y~ 158 (505)
+.|.+ +|.+...+ .+..+..|+++++.|.+.|.|.|.++|++||.++....+ .....+++|.|.+++..|+|.|.
T Consensus 326 v~v~a-~P~w~~~~--~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQ 402 (1051)
T KOG3513|consen 326 VTVYA-PPYWLQKP--QDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQ 402 (1051)
T ss_pred EEEec-Cchhhccc--ceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEE
Confidence 99996 88887765 567789999999999999999999999999999986554 12335889999999999999999
Q ss_pred EEEEcCCCceeeeEEEEEEeC-CeeeeeCCC-ceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCee
Q psy14886 159 CTATNVHGMDESKGRLIVLHG-PSYYEQLPP-KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236 (505)
Q Consensus 159 C~~~~~~g~~~~~~~l~v~~~-p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 236 (505)
|.|.|..|...+.+.|.|... |.+...... ...+..|..+.|.|...+.|.+ .+.|.+++..+..+. ...
T Consensus 403 C~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p--~~~W~k~~~~~~~~~------r~~ 474 (1051)
T KOG3513|consen 403 CIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKP--KVSWLKGGEKLLQSG------RIR 474 (1051)
T ss_pred eeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcc--eEEEEcCCcccccCc------eEE
Confidence 999999999999999999886 444433322 2467789999999999998765 566999887444322 233
Q ss_pred eecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceE-EEEEeCCeEEEEeecCCCCCCCCceEEEE
Q psy14886 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ-VVEVHKTSATIQWTDGATNGRPITHYKII 315 (505)
Q Consensus 237 ~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~-~~~~~~~~v~l~w~~~~~~~~~i~~y~v~ 315 (505)
...+++|.|.+++.+|.|.|+|.|.|..|.......|.|..++.....+. .....+.+++|.|+..-+.... ..|.+.
T Consensus 475 i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld-~~f~W~ 553 (1051)
T KOG3513|consen 475 ILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLD-ITFTWK 553 (1051)
T ss_pred ECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcc-eEEEEE
Confidence 34678999999999999999999999999999999999987664322111 1234567899999865433332 233333
Q ss_pred EEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeee
Q psy14886 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGG 395 (505)
Q Consensus 316 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~ 395 (505)
.. ...|........... ..-.....+++.+ +.-.+.+.|.|.|...+-.. +. ........||+||..+.+
T Consensus 554 ~n---G~~id~~~~~~~~~~-~~~~~~g~L~i~n-v~l~~~G~Y~C~aqT~~Ds~--s~---~A~l~V~gpPgpP~~v~~ 623 (1051)
T KOG3513|consen 554 KN---GRPIDFNPDGDHFEI-NDGSDSGRLTIAN-VSLEDSGKYTCVAQTALDSA--SA---RADLLVRGPPGPPPDVHV 623 (1051)
T ss_pred EC---CEEhhccCCCCceEE-eCCcCccceEEEe-eccccCceEEEEEEEeecch--hc---ccceEEecCCCCCCceeE
Confidence 21 111111111000000 0000112344444 66666666666666533221 11 222335677788889999
Q ss_pred eccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCcee-eEEEEcCCccceeeEEEEEEEecCCCCC
Q psy14886 396 GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVG-IAVVRIPSEFYYTEYEVKVQAINDVGPG 474 (505)
Q Consensus 396 ~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~p~~~Y~~~v~a~n~~G~g 474 (505)
.+.+.+++.|+|++ +.+.+++|..|.|+.+..-...|..+. ..+.+.+ ....++.+|.|.+.|+|||.|+|..|.|
T Consensus 624 ~~i~~t~~~lsW~~--g~dn~SpI~~Y~iq~rt~~~~~W~~v~-~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~g 700 (1051)
T KOG3513|consen 624 DDISDTTARLSWSP--GSDNNSPIEKYTIQFRTPFPGKWKAVT-TVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIG 700 (1051)
T ss_pred eeeccceEEEEeec--CCCCCCCceEEeEEecCCCCCcceEee-ECCCcccCccceeEEccCCCcceEEEEEEEcccccC
Confidence 99999999999998 777779999999999998899999887 4444333 1235577899999999999999999999
Q ss_pred CCCceEEEeecceEE
Q psy14886 475 PESEVVTIWHDPLVI 489 (505)
Q Consensus 475 ~~s~~~~~~t~p~~~ 489 (505)
++|.+.....++++.
T Consensus 701 ePS~pS~~~rT~ea~ 715 (1051)
T KOG3513|consen 701 EPSPPSEKVRTPEAA 715 (1051)
T ss_pred CCCCCccceecCCCC
Confidence 999998876655444
No 4
>KOG4221|consensus
Probab=100.00 E-value=3e-44 Score=344.43 Aligned_cols=463 Identities=24% Similarity=0.378 Sum_probs=349.6
Q ss_pred CCCCceEEEEEEecc--CCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCC-----CCCeEEEEEEEcc-cC
Q psy14886 2 DNQADLTWTCEAFGV--PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE-----RDPAMYQCRAKNQ-LK 73 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~--p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~-----~d~G~Y~C~~~~~-~~ 73 (505)
.+|..+.|.|..... +.+.|.|.|||..+... .+..+-.+.+++|.|.++. . -|.|.|+|.|.-. .|
T Consensus 52 ~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~----~d~~~~~LsNgSl~i~~v~-~~kh~~~~eg~Yqc~atv~~~g 126 (1381)
T KOG4221|consen 52 MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEV----YDDRRQLLSNGSLYISSVL-ASKHNKVDEGVYQCLATVEDVG 126 (1381)
T ss_pred ccccceEEeccccccCCCCeeEEEccCchhhhhh----hhhHHhhccCCceeEeeec-ccccccccCceEEEEEEccccc
Confidence 478899999998543 47899999999877632 1234445688999999998 6 7899999999865 44
Q ss_pred ceEe-eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCC
Q psy14886 74 TRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRD 152 (505)
Q Consensus 74 ~~~~-~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~ 152 (505)
..-+ .+.|.+.. .+.|...+ .+..+..|+++.|.|.+++.|.+.+.|.++..++..++++....++.|.|.+++.+
T Consensus 127 si~Sr~a~v~~a~-~~~f~~~~--~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~ 203 (1381)
T KOG4221|consen 127 SILSRTAKVALAG-LADFALQP--ESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPS 203 (1381)
T ss_pred eeecceEEEEecc-cCccccCc--cceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccC
Confidence 4433 45666664 55565555 34568899999999999998888999999999888777888889999999999999
Q ss_pred CCEEEEEEEEcCCCce-eeeEEEEEEeCCee-----eeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCC
Q psy14886 153 DSGIYSCTATNVHGMD-ESKGRLIVLHGPSY-----YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 226 (505)
Q Consensus 153 d~G~y~C~~~~~~g~~-~~~~~l~v~~~p~~-----~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~ 226 (505)
|.|.|+|.+.+..... +..+.|.|...|.. ....+....+..|+.+.|.|.+.+.+.|. +.|.++|..+...
T Consensus 204 d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~--v~Wlrng~~i~~d 281 (1381)
T KOG4221|consen 204 DTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPS--VKWLRNGEKISVD 281 (1381)
T ss_pred CCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCc--eEEeeCCeeeeec
Confidence 9999999999875433 33477777633321 12335566788999999999999998875 5599999998764
Q ss_pred CCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCC--------------------------
Q psy14886 227 DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG-------------------------- 280 (505)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~-------------------------- 280 (505)
. ........+.|.|.+++..|+|.|+|.|.|..-.......|.|+.+|.
T Consensus 282 s-----~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p 356 (1381)
T KOG4221|consen 282 S-----YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKP 356 (1381)
T ss_pred c-----eEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCC
Confidence 3 122233467899999999999999999998444444444454543321
Q ss_pred -------------------------------------------------------------------------CCCceEE
Q psy14886 281 -------------------------------------------------------------------------LPGGVQV 287 (505)
Q Consensus 281 -------------------------------------------------------------------------~p~~~~~ 287 (505)
.|..+.+
T Consensus 357 ~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~ 436 (1381)
T KOG4221|consen 357 IPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVA 436 (1381)
T ss_pred cceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceec
Confidence 1222333
Q ss_pred EEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCC
Q psy14886 288 VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNEL 367 (505)
Q Consensus 288 ~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~ 367 (505)
...+...+.++|.+|...++++..|.+.|...... |.+...... ++ ....+.+ |.+.+.|.|+|.|.|..
T Consensus 437 ~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~-rer~~~tss-------~g-~~~tv~n-l~p~t~Y~~rv~A~n~~ 506 (1381)
T KOG4221|consen 437 NLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDV-RERLQNTSS-------PG-IQVTVQN-LSPLTMYFFRVRAKNEA 506 (1381)
T ss_pred ccccceeEEEeecCccccCCCcceEEEEEecCCch-hhhheeccC-------Cc-eEEEeee-cccceeEEEEEeccCcc
Confidence 33445578999998887788999999988876432 322211100 12 4566677 99999999999999999
Q ss_pred CcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceee
Q psy14886 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447 (505)
Q Consensus 368 G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~ 447 (505)
|.+.++.+. .+.+.++ +|+. +++......++.+.|++ |..+|++|++|+|.|.+.+.+.|.......
T Consensus 507 g~g~sS~pL-kV~t~pE---gp~~-~~a~ats~~ti~v~Wep--P~~~n~~I~~yk~~ys~~~~~~~~~~~~n~------ 573 (1381)
T KOG4221|consen 507 GSGESSAPL-KVTTQPE---GPVQ-LQAYATSPTTILVTWEP--PPFGNGPITGYKLFYSEDDTGKELRVENNA------ 573 (1381)
T ss_pred cCCccCCce-EEecCCC---CCcc-ccccccCcceEEEEecC--CCCCCCCceEEEEEEEcCCCCceEEEecCc------
Confidence 999988876 5665555 3444 88888889999999998 678999999999999999877777555443
Q ss_pred EEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeec------ceEEEEEEEeCceeeee
Q psy14886 448 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHD------PLVIISYVCQGDLKLCL 502 (505)
Q Consensus 448 ~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~------p~~~~~~~~~~~~~~~~ 502 (505)
..++|++|+|.|.|.|+|.|+|++|.|..|..+.+.|. ||-...+.-.+...|++
T Consensus 574 ~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrV 634 (1381)
T KOG4221|consen 574 TEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRV 634 (1381)
T ss_pred cEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEE
Confidence 78899999999999999999999999999999999884 55545555456666654
No 5
>KOG4222|consensus
Probab=100.00 E-value=5.5e-39 Score=306.74 Aligned_cols=459 Identities=27% Similarity=0.387 Sum_probs=356.1
Q ss_pred CCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-eE
Q psy14886 2 DNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SA 79 (505)
Q Consensus 2 ~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~~ 79 (505)
-.|+.+.|.|.- .+.|.+.+.|.|+|+++... ....+..+.++.|.|.+++ ..|+|.|.|.+.|..|..++ .+
T Consensus 144 a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~----~~~~~~lisgG~LlIsnvr-ksD~GtY~CVatNmvG~ReS~~A 218 (1281)
T KOG4222|consen 144 AVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHY----DVPIIALISGGNLLISNVR-KSDEGTYACVATNMVGERESIPA 218 (1281)
T ss_pred cccceeEEeccCCCCCCCCcceeecCCCccccc----cceeEEEecCCcEEEeccc-cCCCceeeeeecccccccccccc
Confidence 468999999997 46889999999999998721 1233445689999999999 99999999999999998777 48
Q ss_pred EEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC-CCEEEcCCCCCCCEEEE
Q psy14886 80 QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN-GNLLISPVSRDDSGIYS 158 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~-~~l~i~~v~~~d~G~y~ 158 (505)
.|.|.+ +|.|...+ ....+..|..+.+.|.+.|.|.+.+.|.+++..+.. .++.+..+ .+|.|.+++..|.|.|.
T Consensus 219 ~lsv~e-~P~f~~rp--~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~-~ry~i~~d~qtl~i~r~tp~deg~y~ 294 (1281)
T KOG4222|consen 219 RLSVQE-KPWFWKRP--KDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPR-SRYSILDDTQTLRIDRVTPTDEGTYV 294 (1281)
T ss_pred eeeecc-CCcccccc--ccceeecccccccccccCCCCCCceeeeccCCCCCc-cceeeeeccccccccccCCCccccee
Confidence 899996 78887766 456788999999999999999999999997766654 44555544 89999999999999999
Q ss_pred EEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC---cccCCe
Q psy14886 159 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN---ELETPN 235 (505)
Q Consensus 159 C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~~ 235 (505)
|.+.|..|.......++|+.+|.+... +....+..|..++|.|.+.++|.|.+. |.+.|......... ......
T Consensus 295 C~a~n~vG~l~asa~ltV~apP~f~kk-p~dq~v~lg~~vt~pc~~~gnP~Pavf--W~keg~q~llf~~~p~~~~~r~s 371 (1281)
T KOG4222|consen 295 CPAENLVGGLEASATLTVQAPPSFGKK-PRDQKVALGGTVTFPCETLGNPPPAVF--WLKEGSQDLLFSASPPSSNGRGS 371 (1281)
T ss_pred eeccccccccccccceEEecCcccccc-cCccccccCceEEeeeecCCCCCcceE--EeccCcceecccCCCCCcCccce
Confidence 999999999999999999988887654 445667788899999999999988765 77755432221100 000000
Q ss_pred e-------------------------------------------------------------------------------
Q psy14886 236 I------------------------------------------------------------------------------- 236 (505)
Q Consensus 236 ~------------------------------------------------------------------------------- 236 (505)
.
T Consensus 372 vs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~ 451 (1281)
T KOG4222|consen 372 VSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPN 451 (1281)
T ss_pred ecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCC
Confidence 0
Q ss_pred ------------------eecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC---------------CCCCCC
Q psy14886 237 ------------------NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG---------------PPGLPG 283 (505)
Q Consensus 237 ------------------~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~---------------~p~~p~ 283 (505)
......+++..+...|.|.|+|.+.+..|+..-+..+.|.+ .|.+|.
T Consensus 452 i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~ 531 (1281)
T KOG4222|consen 452 ISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPG 531 (1281)
T ss_pred chhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCC
Confidence 00025788888889999999999999999988888887743 356677
Q ss_pred ceEEEEEeCCeEEEEeecCCC-CCCCCceEEEEEEeC-CCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEE
Q psy14886 284 GVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTN-WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKV 361 (505)
Q Consensus 284 ~~~~~~~~~~~v~l~w~~~~~-~~~~i~~y~v~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v 361 (505)
...+..+..++++|+|.+... +..|+..|.+++... ....|......+. .....|.+ |.|...|.|.|
T Consensus 532 ~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~---------~t~~~I~g-L~P~~sylf~v 601 (1281)
T KOG4222|consen 532 TPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVK---------TTTYAIRG-LKPNLSYLFLV 601 (1281)
T ss_pred CCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccccc---------cceeeecC-cCccceeeeee
Confidence 778888999999999998875 557889899986544 3577887655442 34555565 99999999999
Q ss_pred EEEcCCCcCCCCC-------------------------------------------------------------------
Q psy14886 362 IAGNELGYGEPSS------------------------------------------------------------------- 374 (505)
Q Consensus 362 ~a~n~~G~~~~s~------------------------------------------------------------------- 374 (505)
+|.|..|.+.++.
T Consensus 602 Ra~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r 681 (1281)
T KOG4222|consen 602 RAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQGYRISYR 681 (1281)
T ss_pred eccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecccCcccccceEEEec
Confidence 9999999874333
Q ss_pred ----------------------------------------------------CCCCccCCCCCCCCCCce---eeeeccc
Q psy14886 375 ----------------------------------------------------PSPQYNTPADKPYQAPSR---IGGGGGK 399 (505)
Q Consensus 375 ----------------------------------------------------~~~~~~t~~~~p~~~P~~---~~~~~~~ 399 (505)
....+.+.+..|+.+|.. ++....+
T Consensus 682 ~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n 761 (1281)
T KOG4222|consen 682 SLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYN 761 (1281)
T ss_pred cCccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCCCCCCCccccccccCC
Confidence 122345567788888888 4555667
Q ss_pred cccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCce
Q psy14886 400 IGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479 (505)
Q Consensus 400 ~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~ 479 (505)
.+.+.|+|.++|.+..++++.+|.|+...-... ........+......+|.+|.++..|.|+|.|.|.+|.|+.++.
T Consensus 762 ~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~t---r~h~n~t~~a~~~sv~i~~l~~g~ay~vtv~a~T~aGvG~~s~p 838 (1281)
T KOG4222|consen 762 GTAGSVSWAPPPADVQNGILQGYKIECSGGEKT---RIHINKTTNARTGSVTIGNLVTGIAYSVTVAARTGAGVGVKSPP 838 (1281)
T ss_pred CceeeEEecCCcccccCCcccceeEEeecCccc---cccccccccCCCCceEeccccccceEEEEEeeecCCccCCCCCC
Confidence 889999999998889999999999988654422 12222233345567788999999999999999999999998877
Q ss_pred EEEeec
Q psy14886 480 VTIWHD 485 (505)
Q Consensus 480 ~~~~t~ 485 (505)
....+.
T Consensus 839 ~~~~~~ 844 (1281)
T KOG4222|consen 839 QPIVFD 844 (1281)
T ss_pred eeeecC
Confidence 666443
No 6
>KOG4222|consensus
Probab=100.00 E-value=1.2e-38 Score=304.40 Aligned_cols=465 Identities=23% Similarity=0.355 Sum_probs=328.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCC----CCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLN----PERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~----~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|+.|+.++|.|.++|.|.++|+|+|+|++..... ....|+.+..++|.+..+- ...|.|.|+|.+.|..|...
T Consensus 43 vs~~~patlnc~asG~ppPti~w~k~G~~~~~~e---~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~av 119 (1281)
T KOG4222|consen 43 VSKGEPATLNCKASGDPPPTIEWYKDGENVFKGE---PGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAV 119 (1281)
T ss_pred ccCCCCceeecCCCCCCCCceecccCCcccCCCC---CCCcceecCCccEEEEecccCCcccCCCceeEeeecCccceee
Confidence 4678999999999999999999999997554322 2456777777777765432 02389999999999998876
Q ss_pred e-eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEec--CCCcEEEeeCCCEEEcCCCCC
Q psy14886 77 S-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRD 152 (505)
Q Consensus 77 ~-~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~--~~~~~~~~~~~~l~i~~v~~~ 152 (505)
+ .+.|.+..+.-.|.+.+.. +.+..|+.+.|+|.- .+.|.+.+.|.|+|+++. ....+.+...+.|.|.++...
T Consensus 120 Sr~a~L~vavlrddfrv~prd--~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrks 197 (1281)
T KOG4222|consen 120 SRGASLIVAVLRDDFRVSPRD--VQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKS 197 (1281)
T ss_pred ecCceEEEEEechhcccCccc--ccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccC
Confidence 6 5777777767788887743 778899999999984 667889999999999886 455666778999999999999
Q ss_pred CCEEEEEEEEcCCCceeee-EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcc
Q psy14886 153 DSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 231 (505)
Q Consensus 153 d~G~y~C~~~~~~g~~~~~-~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 231 (505)
|.|.|.|.++|..|..++. ++|.|+.+|.+... +....+..|..+.+.|.+.++|.|.+. |.+++..+....
T Consensus 198 D~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~r-p~~~~v~~g~~~~f~c~v~GdP~P~Vr--wkk~~~~~P~~r---- 270 (1281)
T KOG4222|consen 198 DEGTYACVATNMVGERESIPARLSVQEKPWFWKR-PKDLAVLVGAAAEFDCRVGGDPQPTVR--WKKDDPSLPRSR---- 270 (1281)
T ss_pred CCceeeeeecccccccccccceeeeccCCccccc-cccceeecccccccccccCCCCCCcee--eeccCCCCCccc----
Confidence 9999999999999988887 89999888887754 567788899999999999999988766 555554544322
Q ss_pred cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceE-------------EEEEeCCeEEEE
Q psy14886 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ-------------VVEVHKTSATIQ 298 (505)
Q Consensus 232 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~-------------~~~~~~~~v~l~ 298 (505)
.....+..++.|......|.|.|.|.+.|..|..+....++|+.+|..-.... +...+...-.+.
T Consensus 271 --y~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~Pavf 348 (1281)
T KOG4222|consen 271 --YSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVF 348 (1281)
T ss_pred --eeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceE
Confidence 23334457899999999999999999999999999999999988775321111 111122222222
Q ss_pred ee-----------cCC-CCC-CC---------------CceEEEE-----------------------------------
Q psy14886 299 WT-----------DGA-TNG-RP---------------ITHYKII----------------------------------- 315 (505)
Q Consensus 299 w~-----------~~~-~~~-~~---------------i~~y~v~----------------------------------- 315 (505)
|. .+. .++ +- -.+|.+.
T Consensus 349 W~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~ 428 (1281)
T KOG4222|consen 349 WLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPA 428 (1281)
T ss_pred EeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeeccc
Confidence 22 111 000 00 0011111
Q ss_pred -----------------EEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCC
Q psy14886 316 -----------------ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 378 (505)
Q Consensus 316 -----------------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~ 378 (505)
+++.....|......+..................||.-.+.|.|.|.|.+..|.+.+|.....
T Consensus 429 nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v 508 (1281)
T KOG4222|consen 429 NQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTV 508 (1281)
T ss_pred ccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEh
Confidence 111112223222211111110000011122334448888999999999999999887764311
Q ss_pred cc----------CCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC-CCCcEEEEeeecCceee
Q psy14886 379 YN----------TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGI 447 (505)
Q Consensus 379 ~~----------t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~ 447 (505)
-. ..+...+.+|....+...+.++++|.|.+. ...+.+++++|.++|..-+ ...|..+- .....
T Consensus 509 ~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~-s~sg~vP~s~yiieafs~~~~etw~~ta----~~v~~ 583 (1281)
T KOG4222|consen 509 EKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPT-SPSGAVPASGYIIEAFSPDLGETWQTTA----GRVKT 583 (1281)
T ss_pred hhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCC-CCCCccccchhHHHHhhhhhcccccccc----ccccc
Confidence 11 112233456666667778899999999983 3357889999999998766 66677433 33466
Q ss_pred EEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEee
Q psy14886 448 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 448 ~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t 484 (505)
+.+.|.+|+|++.|.|.|+|.|..|-|.+|......+
T Consensus 584 t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vr 620 (1281)
T KOG4222|consen 584 TTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVR 620 (1281)
T ss_pred ceeeecCcCccceeeeeeeccccccccCCcccCCccc
Confidence 8999999999999999999999999999887776533
No 7
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.96 E-value=5.3e-27 Score=211.54 Aligned_cols=251 Identities=18% Similarity=0.276 Sum_probs=178.3
Q ss_pred CCCCceEEEEEE-----eccCCCeEEEEECCEECcCCCCCCCCCCcEEEE-CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 2 DNQADLTWTCEA-----FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 2 ~~G~~~~l~C~~-----~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~-~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
.+|+.+.|.|.+ .|.|.+.++|+|+|.... ...... +..|.|.++. .+|+|.|+|.+.|..+..
T Consensus 39 ~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---------~~~~~~~g~~l~i~~~~-~~DsG~Y~C~a~N~~g~~ 108 (326)
T PHA02785 39 LENEPVILPCPQINTLSSGYNILDILWEKRGADND---------RIIPIDNGSNMLILNPT-QSDSGIYICITKNETYCD 108 (326)
T ss_pred hcCCCEEEECCCccccccCCCCceEEEEECCCccc---------eEEEccCCceEEEcccC-cccCeEEEEEEECCCcce
Confidence 479999999997 578889999999975322 122232 3458899999 999999999999998888
Q ss_pred EeeEEEEEEecCC-CccCCCCCceEEeeCCCeEEEEee-----cCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCC
Q psy14886 76 YSSAQLRVLTLKP-SFKKRPLESETYAGEGGNVTIFCN-----PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPV 149 (505)
Q Consensus 76 ~~~~~l~v~~~~p-~~~~~~~~~~~~v~~g~~v~l~C~-----~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v 149 (505)
..++.|.|....+ .+.... ....+.+|..+.|.|. ..+.|.+.+.|+++.. + ...++....++.|.|.++
T Consensus 109 ~~s~~L~V~~~~~~~~~~~~--~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~~~L~i~~v 184 (326)
T PHA02785 109 MMSLNLTIVSVSESNIDLIS--YPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTPGIITIEDV 184 (326)
T ss_pred EEEEEEEEEecCCCccceee--ccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCCCeEEEeec
Confidence 8888888875432 232222 2234679999999997 2356788999988653 2 334555555678999999
Q ss_pred CCCCCEEEEEEEEcCCCceeee----EEEEEEe--CCeeeeeCCCceEEEeeccEEEEEEeeecCCC-CeEEEEEeCCEE
Q psy14886 150 SRDDSGIYSCTATNVHGMDESK----GRLIVLH--GPSYYEQLPPKITIAAHRNLQLRCSAHTEELL-DVAYIWTHNGVR 222 (505)
Q Consensus 150 ~~~d~G~y~C~~~~~~g~~~~~----~~l~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~~w~~~~~~ 222 (505)
+.+|.|.|+|.+.|..|..... +.|.|.. .|+.. ..+....+..|..+.|.|.+.+.|.+ ...+.|.++|..
T Consensus 185 ~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~ 263 (326)
T PHA02785 185 RKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMY 263 (326)
T ss_pred ChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEE
Confidence 9999999999999988765433 3454532 22222 23456677789999999999998753 246789999988
Q ss_pred ecCCCCCcccC-----C-----eeeecCCeEEEecCCCCCCEEEEEEEEecCCcE
Q psy14886 223 IGNMDLNELET-----P-----NINIDGGLLEITNASFADAGEYECVVKSTVGKI 267 (505)
Q Consensus 223 ~~~~~~~~~~~-----~-----~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~ 267 (505)
+...+....+. . ........|.|..+..+|.|.|+|.|.|..|..
T Consensus 264 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 264 YEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred CCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 75421110000 0 001113579999999999999999999987543
No 8
>KOG4194|consensus
Probab=99.96 E-value=1.1e-27 Score=215.42 Aligned_cols=262 Identities=26% Similarity=0.461 Sum_probs=204.7
Q ss_pred CCCceEEEEEEec--cCCCeEEEEECCEECcCCCCCCCCCCcEEE------------ECCeEEEEcCCCCCCCeEEEEEE
Q psy14886 3 NQADLTWTCEAFG--VPDVTYSWFRNGELLNSETLPLEDQDRYFI------------QDNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 3 ~G~~~~l~C~~~~--~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~------------~~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
.|++++|+|.+.+ ..+..+.|.++++.+.... +.+..++.. -.+.|++.+|. ..|+|.|+|.+
T Consensus 517 ~g~nirftC~a~sssasplsi~WR~dnevq~rv~--ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt-~td~grYQCVv 593 (873)
T KOG4194|consen 517 IGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVD--VEDFATFLSQNRNGTFGEREEYTAILHLDNVT-FTDEGRYQCVV 593 (873)
T ss_pred hccceEEEEEeccCCCCCceeEeeeccccCcccc--hhcchhhhhhhccCccchhhhhhheeeeeeee-cccCceEEEEE
Confidence 5899999999976 3468899999887443221 111222211 12579999999 99999999999
Q ss_pred EcccCceEe-eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEE-ecC--CCcEEEe-eCCC
Q psy14886 69 KNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNI-IGS--GGRRKIF-ENGN 143 (505)
Q Consensus 69 ~~~~~~~~~-~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~-~~~--~~~~~~~-~~~~ 143 (505)
.|.+|...+ .+.+.|.. .|.|...| .+..+..|+.+.|.|.+.|.|.|+|.|.|+|.. ... ..|..+. .+..
T Consensus 594 tN~FGStysqk~KltV~~-~PsFtktP--~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~ 670 (873)
T KOG4194|consen 594 TNHFGSTYSQKAKLTVNQ-APSFTKTP--EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDV 670 (873)
T ss_pred ecccCcchhheeEEEeec-cCccccCc--ccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCE
Confidence 999999877 68899995 78888887 567789999999999999999999999998765 322 2233333 3556
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEe
Q psy14886 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 223 (505)
Q Consensus 144 l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~ 223 (505)
+.|.+|..+|+|.|+|.|.|..|.....+.|+|.+.|.+..+ -....+..|+.+.|.|.+.+.+. +.+..|+++.+++
T Consensus 671 f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~P-L~~~~V~~get~vlqC~a~~~~a-~pr~~W~k~d~pi 748 (873)
T KOG4194|consen 671 FFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIP-LEDQLVVVGETLVLQCLAEGAPA-DPRLEWFKEDKPI 748 (873)
T ss_pred EEEecccccccceeEEeeeccccceeeceEEEEecCCccccc-ccceEEEecceEEEEEecCCCCC-CccccccCCCCce
Confidence 999999999999999999999999999999999998887654 45677899999999999998875 2466799988887
Q ss_pred cCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 224 GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
..... -.+...+..+.+.....+|.|.|+|...+..|.--..+.+.+..
T Consensus 749 l~t~r-----h~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 749 LITER-----HTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred EEeec-----ccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 65321 12233445677888889999999999999999876666665543
No 9
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.87 E-value=1.3e-20 Score=158.90 Aligned_cols=156 Identities=18% Similarity=0.277 Sum_probs=115.8
Q ss_pred CCCCCceEEEEEEeccC-----------CCeEEEEECCEEC--cCC-C---CCCCCCCcEEEECCeEEEEcCCCCCCCeE
Q psy14886 1 MDNQADLTWTCEAFGVP-----------DVTYSWFRNGELL--NSE-T---LPLEDQDRYFIQDNVLTIRYLNPERDPAM 63 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-----------~~~~~W~~~~~~l--~~~-~---~~~~~~~~~~~~~~~L~i~~~~~~~d~G~ 63 (505)
+.+|+++.|.|.+.+.| ...+.|+|++... ... . .......++...+++|.|.+++ .+|+|.
T Consensus 34 v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~-~~DsG~ 112 (227)
T PHA02826 34 AKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVI-NIDEGI 112 (227)
T ss_pred ecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCC-hHHCEE
Confidence 46999999999987643 4589999997642 100 0 0000112222236799999999 999999
Q ss_pred EEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCC-----CCCCeEEEEECCEEecCCCcEEE
Q psy14886 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGSGGRRKI 138 (505)
Q Consensus 64 Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~p~~~i~W~~~g~~~~~~~~~~~ 138 (505)
|+|.|.|..+.....+.|.|.. +. ....+.+|+++.|.|.+.+ .|.|+++|+|+|+++..+.+..+
T Consensus 113 Y~C~a~N~~~~~~~~i~L~V~~--~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~ 183 (227)
T PHA02826 113 YICTISSGNICEESTIRLTFDS--GT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQL 183 (227)
T ss_pred EEEEEEECCcceEEEEEEEEec--CC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEE
Confidence 9999999888877777777752 11 2245778999999999753 35789999999999876666655
Q ss_pred eeC-CCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 139 FEN-GNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 139 ~~~-~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
..+ ++|.|.+++.+|+|.|+|.|....+
T Consensus 184 ~~~~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 184 RNNNSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred eCCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 433 4799999999999999999987543
No 10
>KOG4194|consensus
Probab=99.85 E-value=2.6e-20 Score=168.52 Aligned_cols=172 Identities=24% Similarity=0.435 Sum_probs=141.0
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEE-CcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGEL-LNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~-l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
..|+.+.|.|.++|.|.|+|.|.|+|.. .++ ....|..+ .++.+.|.+++ .+|.|.|+|.|.|.+|....+
T Consensus 625 ~tg~mArl~CaAtG~P~PeIawqkdggtdFPA-----A~eRRl~Vmpedd~f~Itnvk-~eD~GiYtC~A~n~AG~isan 698 (873)
T KOG4194|consen 625 RTGQMARLECAATGHPRPEIAWQKDGGTDFPA-----ARERRLHVMPEDDVFFITNVK-IEDQGIYTCTAQNVAGQISAN 698 (873)
T ss_pred ecccceeeeeeccCCCCcceeehhcCCCCCch-----hhhheeeecCCCCEEEEeccc-ccccceeEEeeeccccceeec
Confidence 5689999999999999999999998764 332 23445554 56789999999 999999999999999999999
Q ss_pred EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCC-CeEEEEECCEEecCCCcEEEeeCC-CEEEcCCCCCCCEE
Q psy14886 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENG-NLLISPVSRDDSGI 156 (505)
Q Consensus 79 ~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~-~~i~W~~~g~~~~~~~~~~~~~~~-~l~i~~v~~~d~G~ 156 (505)
+++.|.+ .|.+..+. .+..|..|+++.|.|.+.+.|. |.+.|+|+++++.-..+.....+. -|.+.+...+|.|.
T Consensus 699 AtL~V~e-~p~f~~PL--~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~ 775 (873)
T KOG4194|consen 699 ATLTVLE-TPSFSIPL--EDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGI 775 (873)
T ss_pred eEEEEec-CCcccccc--cceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcce
Confidence 9999997 66666554 3356889999999999999986 899999999888655554444333 47788888999999
Q ss_pred EEEEEEcCCCceeeeEEEEEEeCCee
Q psy14886 157 YSCTATNVHGMDESKGRLIVLHGPSY 182 (505)
Q Consensus 157 y~C~~~~~~g~~~~~~~l~v~~~p~~ 182 (505)
|+|...+..|.....+.+.+...+..
T Consensus 776 yTcem~~~~~~~~~~i~l~~~~~~~~ 801 (873)
T KOG4194|consen 776 YTCEMSNTLGTERIHICLLVYQKKKC 801 (873)
T ss_pred EEEEEEeeccceeeEEEEEEeecCCc
Confidence 99999999998888877777665544
No 11
>KOG0196|consensus
Probab=99.80 E-value=4.4e-18 Score=159.29 Aligned_cols=203 Identities=21% Similarity=0.238 Sum_probs=146.6
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeecCCCCCC-CCceEEEEEEeCCC--CCeEEeeeccccceeeeecCceeeEEeeecc
Q psy14886 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWN--STWFNVSEHVIGKEVDRYTGRKEASIENVLV 352 (505)
Q Consensus 276 ~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~-~i~~y~v~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 352 (505)
..||++|.++... +.++++.|+|.+|.+.|+ .-..|.+..+.-+. +.-..+..++.......- -.......++|.
T Consensus 329 T~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~g-Lt~~~V~v~~L~ 406 (996)
T KOG0196|consen 329 TRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRG-LTETSVTVSDLL 406 (996)
T ss_pred CCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCC-cccceEEEeccc
Confidence 4678888887765 899999999999997654 44678887664432 222223322221111111 123344455599
Q ss_pred CCceeEEEEEEEcCCCcCCCCC---CCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEc
Q psy14886 353 PWSTYEFKVIAGNELGYGEPSS---PSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK 429 (505)
Q Consensus 353 ~~~~y~~~v~a~n~~G~~~~s~---~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~ 429 (505)
+.+.|+|.|.|.|....-.+.. ....+.|..+.|+ +...++......++|+|+|.. ++..+|.|+.|+|.|.+.
T Consensus 407 ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps-~V~~~r~~~~~~~sitlsW~~--p~~png~ildYEvky~ek 483 (996)
T KOG0196|consen 407 AHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPS-PVSVLRQVSRTSDSITLSWSE--PDQPNGVILDYEVKYYEK 483 (996)
T ss_pred cccccEEEEEEeecccccCCCCCcceeEEeeccccCCC-ccceEEEeeeccCceEEecCC--CCCCCCcceeEEEEEeec
Confidence 9999999999999976533332 2234555555554 556788888999999999998 778889999999999998
Q ss_pred CCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 430 NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
+..+........ ..+..+|.+|.|++.|.|+|+|.+.+|.|++|..+.+.|.++
T Consensus 484 ~~~e~~~~~~~t----~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 484 DEDERSYSTLKT----KTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred cccccceeEEec----ccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 744333333333 336778999999999999999999999999999999999988
No 12
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.78 E-value=2.2e-16 Score=142.76 Aligned_cols=190 Identities=22% Similarity=0.280 Sum_probs=127.3
Q ss_pred EeeCCCeEEEEeec-----CCCCCCeEEEEECCEEecCCCcEEEeeCC-CEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 100 YAGEGGNVTIFCNP-----EAAPKPKFVWKKDGNIIGSGGRRKIFENG-NLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 100 ~v~~g~~v~l~C~~-----~~~p~~~i~W~~~g~~~~~~~~~~~~~~~-~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
.+.+|+.+.|.|.+ .|.|.+++.|+|+|... .+.....++ .|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~---~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~ 113 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADN---DRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN 113 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCcc---ceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence 45689999999997 68888899999987532 122223334 4889999999999999999999988888888
Q ss_pred EEEEeCCe-eeeeCCCceEEEeeccEEEEEEe-----eecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEec
Q psy14886 174 LIVLHGPS-YYEQLPPKITIAAHRNLQLRCSA-----HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 247 (505)
Q Consensus 174 l~v~~~p~-~~~~~~~~~~~~~g~~~~l~C~~-----~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 247 (505)
|.|....+ ..........+..|..+.|.|.. .+++ .+.+.|+++.. +... ......++.|.|.+
T Consensus 114 L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~--~~~i~W~k~~~-~~~~-------r~~~~~~~~L~i~~ 183 (326)
T PHA02785 114 LTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNV--NADIIWSGHRR-LRNK-------RLKQRTPGIITIED 183 (326)
T ss_pred EEEEecCCCccceeeccceecccCcEEEECCChhhcccCCC--CceEEEccCCc-cCCc-------ceEecCCCeEEEee
Confidence 88865322 11111223446688899999972 2333 45677977542 2111 11122346899999
Q ss_pred CCCCCCEEEEEEEEecCCcEEE----EEEEEEcCCCCCCC---ceEEEEEeCCeEEEEeecC
Q psy14886 248 ASFADAGEYECVVKSTVGKIST----KTTVIVEGPPGLPG---GVQVVEVHKTSATIQWTDG 302 (505)
Q Consensus 248 ~~~~~~g~y~C~~~n~~g~~~~----~~~l~v~~~p~~p~---~~~~~~~~~~~v~l~w~~~ 302 (505)
++.+|.|.|+|.|.|..|.... .+.|.|..+..+|. ........+..+.|.|..-
T Consensus 184 v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~ 245 (326)
T PHA02785 184 VRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVS 245 (326)
T ss_pred cChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEE
Confidence 9999999999999998886543 34555654333331 1122334477899999853
No 13
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.76 E-value=1.5e-16 Score=134.35 Aligned_cols=155 Identities=24% Similarity=0.374 Sum_probs=113.8
Q ss_pred eEEeeCCCeEEEEeecCCCC-----------CCeEEEEECCEEe--cC-CCc--------EE-EeeCCCEEEcCCCCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP-----------KPKFVWKKDGNII--GS-GGR--------RK-IFENGNLLISPVSRDDS 154 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p-----------~~~i~W~~~g~~~--~~-~~~--------~~-~~~~~~l~i~~v~~~d~ 154 (505)
...+.+|+++.|.|.+.+.+ ...+.|+|++... .. +.+ .. ...++.|.|.+++.+|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 35688999999999987744 3489999987652 11 111 01 12245899999999999
Q ss_pred EEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecC---CCCeEEEEEeCCEEecCCCCCcc
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE---LLDVAYIWTHNGVRIGNMDLNEL 231 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~~~~w~~~~~~~~~~~~~~~ 231 (505)
|.|+|.|.|..+.....+.|.|...+ ....+..|+.+.|.|.+.+.+ .|..++.|++++..+.....
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r--- 180 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDSGT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR--- 180 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEecCC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC---
Confidence 99999999988887777888874321 234567899999999986542 23457889999998864321
Q ss_pred cCCeeeecCCeEEEecCCCCCCEEEEEEEEecC
Q psy14886 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTV 264 (505)
Q Consensus 232 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 264 (505)
......+..|.|.+++.+|+|.|+|.|....
T Consensus 181 --~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 181 --IQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred --EEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 1222345689999999999999999997754
No 14
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.62 E-value=3.3e-15 Score=102.26 Aligned_cols=72 Identities=28% Similarity=0.453 Sum_probs=64.1
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 82 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 82 (505)
|++++|.|.+.|.|.+.|+|+|++..+. ...++.+ .+++|.|.+++ .+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~-------~~~r~~~~~~g~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLV-------NNSRISIWDDGSLEILNIT-KLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecc-------cCCCEEEcCCCEEEECcCC-hhHCEEEEEEEECCCCceeEEEEEE
Confidence 7899999999999999999999998775 3456766 56899999999 9999999999999999998888876
Q ss_pred E
Q psy14886 83 V 83 (505)
Q Consensus 83 v 83 (505)
|
T Consensus 73 ~ 73 (73)
T cd05852 73 V 73 (73)
T ss_pred C
Confidence 4
No 15
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.61 E-value=4.5e-15 Score=102.80 Aligned_cols=73 Identities=27% Similarity=0.519 Sum_probs=63.4
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE-EECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF-IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
||+++.|.|.+.|.|.+.|.|+|++..+.. ..++. ..+++|.|.+++ .+|+|.|+|.|.|..|.....+.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~-------~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSV-------DRRHLVLSSGTLRISRVA-LHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCC-------CCCeEEccCCeEEEeeCC-HHhCEEEEEEEEeCCCceeEEEEE
Confidence 799999999999999999999999998863 23333 356799999999 999999999999999998888877
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 65
No 16
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.61 E-value=9.8e-15 Score=106.62 Aligned_cols=85 Identities=22% Similarity=0.365 Sum_probs=75.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee---CCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
....+..|+.+.|.|.+.|.|.+.+.|+|+|..+..+.++.+.. ...|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~ 87 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN 87 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence 45678999999999999999999999999999998666665543 346999999999999999999999999999999
Q ss_pred EEEEeCCe
Q psy14886 174 LIVLHGPS 181 (505)
Q Consensus 174 l~v~~~p~ 181 (505)
|.|.+.|.
T Consensus 88 l~V~~~P~ 95 (98)
T cd05762 88 LTVVDKPD 95 (98)
T ss_pred EEEecCCC
Confidence 99988764
No 17
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.61 E-value=6.4e-15 Score=100.84 Aligned_cols=73 Identities=42% Similarity=0.778 Sum_probs=66.9
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+++.|.|.+.|.|.|++.|+|++..+..+.++.+..+++|.|.+++.+|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6789999999999999999999999887777888877889999999999999999999999999998887764
No 18
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.60 E-value=7.8e-15 Score=101.59 Aligned_cols=74 Identities=32% Similarity=0.663 Sum_probs=66.5
Q ss_pred CCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+|+++.|.|.+.|.|.|.+.|+++|..+....+.....+++|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 58999999999999999999999999887666666666788999999999999999999999999988887764
No 19
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=7.1e-15 Score=105.26 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=65.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.+|++++|.|.+.|.|.+.++|+|++.++. ...++...++.|.|.+++ .+|+|.|+|.|.|..|.....+.
T Consensus 13 ~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~-------~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~~~~ 84 (88)
T cd05851 13 ALKGQNVTLECFALGNPVPVIRWRKILEPMP-------ATAEISMSGAVLKIFNIQ-PEDEGTYECEAENIKGKDKHQAR 84 (88)
T ss_pred EeCCCcEEEEEEecccCCCEEEEEECCcCCC-------CCCEEecCCCEEEECcCC-hhhCEEEEEEEEcCCCceEEEEE
Confidence 3589999999999999999999999998775 234555667899999999 99999999999999999888888
Q ss_pred EEE
Q psy14886 81 LRV 83 (505)
Q Consensus 81 l~v 83 (505)
|.|
T Consensus 85 l~V 87 (88)
T cd05851 85 VYV 87 (88)
T ss_pred EEE
Confidence 776
No 20
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.59 E-value=2e-14 Score=100.18 Aligned_cols=75 Identities=23% Similarity=0.464 Sum_probs=65.3
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
|++++|.|.+.|.|.+.++|+|+|.++.... ...++...+++|.|.+++ .+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~----~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTD----PDPRRHVSSGALILTDVQ-PSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCC----CCceEEeeCCEEEECCCC-hhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7899999999999999999999999886421 223566678899999999 99999999999999999988888876
No 21
>KOG3515|consensus
Probab=99.59 E-value=1.7e-13 Score=130.98 Aligned_cols=414 Identities=15% Similarity=0.127 Sum_probs=239.5
Q ss_pred CCCCceEEEEEEec-cCCCeEEEEECCEECcCC-CCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee-
Q psy14886 2 DNQADLTWTCEAFG-VPDVTYSWFRNGELLNSE-TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS- 78 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~-~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~- 78 (505)
..|+...+.|...+ +|...+.|+|+....... ...........+..-.+...... ..|.|.|+|.+.+......++
T Consensus 313 s~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~-~~~~g~v~c~a~~~~~~~~sss 391 (741)
T KOG3515|consen 313 SSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSS-QQDGGQVTCPADNLELAHSSSS 391 (741)
T ss_pred ccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccc-hhcCceEEcccccccccccccc
Confidence 46788889998754 788999999965544321 11111112222222345666777 889999999999877554443
Q ss_pred -EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCC-CCeEEEEECCEEecCCC--cEEEeeCC-CEEEcCCCCCC
Q psy14886 79 -AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGG--RRKIFENG-NLLISPVSRDD 153 (505)
Q Consensus 79 -~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p-~~~i~W~~~g~~~~~~~--~~~~~~~~-~l~i~~v~~~d 153 (505)
..+.+.. +|.+...- .......+++.....-.+.++| .+.+.|.+++-.+.... .+.+.... .....++.+.|
T Consensus 392 ~~~l~~l~-~p~~L~~~-~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d 469 (741)
T KOG3515|consen 392 SFLLPVLP-SPAFLVRH-KTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSD 469 (741)
T ss_pred ceeccccC-Cchhhhhc-ccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeecc
Confidence 3344442 34333322 2334455555554444444554 55999999888776433 23333333 24466789999
Q ss_pred CEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccC
Q psy14886 154 SGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELET 233 (505)
Q Consensus 154 ~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 233 (505)
.|.|.|.+.|+.|.......+.+...|..... ........++++...|.....+...--+.|.+.+..... .......
T Consensus 470 ~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~-~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~-~~~~~~~ 547 (741)
T KOG3515|consen 470 GGSYGLTATNSPGGAQAYLLLGVHTSPHNHHL-QDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSD-QIDQDAP 547 (741)
T ss_pred CCcceeeeccCCCceeeEEeeccccCCccccc-ccccccCCCCcccceeeccccccchhhhcccccCCCCcc-ccccccc
Confidence 99999999999998888777667665554332 223344556678899998887765555668776655432 1111111
Q ss_pred CeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCC---CCCceEEEEEeCCeEEEEeecCCCCCCCCc
Q psy14886 234 PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG---LPGGVQVVEVHKTSATIQWTDGATNGRPIT 310 (505)
Q Consensus 234 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~---~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~ 310 (505)
.........+.+........+.|.|.+.+..........+.+...+. .+..+.....+...++.+|. -.+.+..
T Consensus 548 ~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~as~~~~---a~~~~~~ 624 (741)
T KOG3515|consen 548 QQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNASDDCV---ASGVPST 624 (741)
T ss_pred ccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccccCCceeeeccCcccccccce---ecccccc
Confidence 22223345566666666678999999988222233334444433221 11122222222224444442 1233333
Q ss_pred eEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCC
Q psy14886 311 HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 390 (505)
Q Consensus 311 ~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P 390 (505)
.|.....+.....-........ . .......+..+.+ -.++..|.+.|.+.|.+|.+..+... ....-+..|
T Consensus 625 ~~~~~k~p~~~~~~~~~~~~~~--~-~~~~~s~~~~~~~-~~~~~~y~~~c~t~n~lg~~~v~~~~-----~~~t~~~~~ 695 (741)
T KOG3515|consen 625 SFTTAKTPLQTTEGPHIREKAT--Q-QGQTHSSSEWILN-HIDGSDYENGCTTQNLLGSDHVSGAI-----HSGTASVGP 695 (741)
T ss_pred eeecccCCCcccCCceEEEeee--e-ccccccccccccC-CcchhhhcceeeecccCCCcccccee-----cCCcCCCCc
Confidence 3433322221100000000000 0 0011222334444 77888999999999999998766542 244555688
Q ss_pred ceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcE
Q psy14886 391 SRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQ 435 (505)
Q Consensus 391 ~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~ 435 (505)
.|+.........|.|.|.| ...+|-.+.|.+.|...+...++
T Consensus 696 ~n~~~~~~~~~~i~l~~~p---~fdgg~~q~f~~~~~~~~~~~~~ 737 (741)
T KOG3515|consen 696 INLTYDNLTYSTISLEWMP---GFDGGLQQRFFLKYYDLGTMKLH 737 (741)
T ss_pred cceEeeeeeeeeeceeeee---ccccccccceeeehhhcCCceeE
Confidence 9999988889999999997 45567778999999887755433
No 22
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.59 E-value=1.5e-14 Score=103.54 Aligned_cols=87 Identities=28% Similarity=0.470 Sum_probs=71.8
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
+|.+...+ .+..+.+|+.+.|.|.+.|.|.|.++|++++..+....+.. ..++.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 ~p~i~~~~--~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 77 (88)
T cd05851 1 PADINVKF--KDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS-MSGAVLKIFNIQPEDEGTYECEAENIKG 77 (88)
T ss_pred CCceEEcc--ccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe-cCCCEEEECcCChhhCEEEEEEEEcCCC
Confidence 35555554 44668899999999999999999999999998776544333 2355799999999999999999999999
Q ss_pred ceeeeEEEEE
Q psy14886 167 MDESKGRLIV 176 (505)
Q Consensus 167 ~~~~~~~l~v 176 (505)
.....+.|.|
T Consensus 78 ~~~~~~~l~V 87 (88)
T cd05851 78 KDKHQARVYV 87 (88)
T ss_pred ceEEEEEEEE
Confidence 9988888876
No 23
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.59 E-value=1.4e-14 Score=105.80 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=68.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|.+|+.++|.|.+.|.|.+.+.|+|++.+|.. ..++.+. .+.|.|.++. .+|+|.|+|.+.|..|...
T Consensus 12 v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~-------~~~~~~~~~~~~s~L~I~~~~-~~D~G~Ytc~a~N~~G~~~ 83 (98)
T cd05762 12 VRAGESVELFCKVTGTQPITCTWMKFRKQIQE-------GEGIKIENTENSSKLTITEGQ-QEHCGCYTLEVENKLGSRQ 83 (98)
T ss_pred EECCCEEEEEEEEcccCCCceEEEECCEEecC-------CCcEEEEecCCeeEEEECCCC-hhhCEEEEEEEEcCCCcee
Confidence 46899999999999999999999999999973 3344442 5689999999 9999999999999999999
Q ss_pred eeEEEEEEe
Q psy14886 77 SSAQLRVLT 85 (505)
Q Consensus 77 ~~~~l~v~~ 85 (505)
..+.|.|..
T Consensus 84 ~~~~l~V~~ 92 (98)
T cd05762 84 AQVNLTVVD 92 (98)
T ss_pred EEEEEEEec
Confidence 999999986
No 24
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.58 E-value=1.9e-14 Score=102.56 Aligned_cols=75 Identities=39% Similarity=0.686 Sum_probs=67.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.+|++++|.|.+.|.|.+.+.|+|++.++. ...++...++.|.|.+++ .+|+|.|+|.|.|..|....++.
T Consensus 11 ~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~-------~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05728 11 ADIGSSLRWECKASGNPRPAYRWLKNGQPLA-------SENRIEVEAGDLRITKLS-LSDSGMYQCVAENKHGTIYASAE 82 (85)
T ss_pred EcCCCcEEEEEEeeEeCCCEEEEEECCEECC-------CCCeEEEeCCEEEEeeCC-HHHCEEEEEEEECCCCeEEEEEE
Confidence 4689999999999999999999999999886 445777788999999999 99999999999999999888887
Q ss_pred EEE
Q psy14886 81 LRV 83 (505)
Q Consensus 81 l~v 83 (505)
|.|
T Consensus 83 l~V 85 (85)
T cd05728 83 LAV 85 (85)
T ss_pred EEC
Confidence 764
No 25
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.57 E-value=2.3e-14 Score=98.38 Aligned_cols=70 Identities=26% Similarity=0.461 Sum_probs=59.3
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE--C-C--eEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--D-N--VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~--~-~--~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
++|.|.+.|.|.|.|.|+|++..+.. ...|+.+. + + +|.|.+++ .+|+|.|+|.|.|..|.....+.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~------~~~r~~~~~~~~g~~~L~I~~~~-~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQY------NTDRISLYQDNSGRVTLLIKNVN-KKDAGWYTVSAVNEAGVATCHARL 73 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcC------CCCeEEEEEcCCCcEEEEECCCC-hhhCEEEEEEEEcCcCeEEEEEEE
Confidence 57999999999999999999998863 23455542 2 2 79999999 999999999999999999888887
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 74 ~V 75 (75)
T cd05892 74 DV 75 (75)
T ss_pred eC
Confidence 65
No 26
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.57 E-value=2.3e-14 Score=104.61 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=64.1
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEE--------ECCeEEEEcCCCCCCCeEEEEEEEcc
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFI--------QDNVLTIRYLNPERDPAMYQCRAKNQ 71 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~~d~G~Y~C~~~~~ 71 (505)
|.+|++++|.|.+.| .|++.+.|+|||.+|... ...... ..++|.|..++ .+|+|.|+|.|.|.
T Consensus 15 v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~------~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~G~Ytc~A~N~ 87 (101)
T cd04975 15 VNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNK------LTEIVTSENESEYRYVSELKLVRLK-ESEAGTYTFLASNS 87 (101)
T ss_pred EECCCCEEEEEEEEecCCCCccEEEeCCeeCCCC------cceeEEEeccCcceEEEEEEEeecC-HhhCeeEEEEEECC
Confidence 468999999999999 889999999999999732 111211 13689999999 99999999999999
Q ss_pred cCceEeeEEEEEE
Q psy14886 72 LKTRYSSAQLRVL 84 (505)
Q Consensus 72 ~~~~~~~~~l~v~ 84 (505)
.|.....+.|.|.
T Consensus 88 ~G~~~~t~~L~V~ 100 (101)
T cd04975 88 DASKSLTFELYVN 100 (101)
T ss_pred CccEEEEEEEEEE
Confidence 9998888888775
No 27
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.56 E-value=3.3e-14 Score=97.82 Aligned_cols=70 Identities=29% Similarity=0.447 Sum_probs=59.5
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEEC-C----eEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-N----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~-~----~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
++|.|.+.|.|.|.+.|+|++.++.. ...++.+.. . +|.|.+++ .+|+|.|+|.|.|..|....++.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~------~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTH------NTDRVSMHQDNCGYICLLIQGAT-KEDAGWYTVSAKNEAGIVSCTARL 73 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCC------CCCeEEEEEcCCCEEEEEECCCC-HHHCEEEEEEEEcCCCEEEEEEEE
Confidence 58999999999999999999998863 234565532 1 69999999 999999999999999999888887
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 74 ~V 75 (75)
T cd05893 74 DV 75 (75)
T ss_pred eC
Confidence 65
No 28
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.56 E-value=4.7e-14 Score=97.90 Aligned_cols=76 Identities=28% Similarity=0.456 Sum_probs=64.0
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
|++++|.|.+.|.|.++|+|+|+|+++.... ........++.|.|.+++ .+|+|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~----~~~~~~~~~~~l~i~~v~-~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAP----TDPSRKVDGDTIIFSKVQ-ERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccC----CCceEEecCCEEEECCCC-HhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 7899999999999999999999999886321 112233456789999999 99999999999999999999988887
Q ss_pred E
Q psy14886 84 L 84 (505)
Q Consensus 84 ~ 84 (505)
.
T Consensus 76 ~ 76 (76)
T cd05868 76 L 76 (76)
T ss_pred C
Confidence 3
No 29
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.55 E-value=1.1e-13 Score=101.31 Aligned_cols=91 Identities=32% Similarity=0.562 Sum_probs=73.9
Q ss_pred CCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEEeeC-CCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFEN-GNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~-~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
||.+..........+..|+++.|.|.+.|.|.+.+.|+++|..+... .++....+ ..|.|.++..+|.|.|+|.|.|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK 80 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence 34454444445567899999999999999999999999999988654 34443333 35999999999999999999999
Q ss_pred CCceeeeEEEEEE
Q psy14886 165 HGMDESKGRLIVL 177 (505)
Q Consensus 165 ~g~~~~~~~l~v~ 177 (505)
.|.....+.|.|.
T Consensus 81 ~G~~~~~~~L~V~ 93 (95)
T cd05730 81 AGEQEAEIHLKVF 93 (95)
T ss_pred CCeEEEEEEEEEE
Confidence 9999888888875
No 30
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.55 E-value=4.7e-14 Score=96.33 Aligned_cols=70 Identities=19% Similarity=0.350 Sum_probs=61.0
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 84 (505)
+.|.|.+.|.|.+.+.|+|+|.++.. ..++...+.+|.|.+++ .+|+|.|+|.|.|..|....++.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~-------~~~~~~~~~~L~I~~v~-~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISE-------KNRTKKSGHSLTIKDVT-EEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCC-------CCEEEcCCCEEEECcCC-HHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 57999999999999999999999873 35666677899999999 999999999999999988777776664
No 31
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.55 E-value=4.6e-14 Score=102.41 Aligned_cols=75 Identities=28% Similarity=0.466 Sum_probs=62.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--E---CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--Q---DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~---~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+++.|.|.+.|.|.+.+.|+|++.++.. ..++.+ . ..+|.|.+++ .+|+|.|+|.|.|..|..
T Consensus 13 v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~-------~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05737 13 IMEGKTLNLTCTVFGDPDPEVSWLKNDQALAL-------SDHYNVKVEQGKYASLTIKGVS-SEDSGKYGIVVKNKYGGE 84 (92)
T ss_pred EeCCCcEEEEEEEEecCCCeEEEEECCEECcc-------CCCEEEEEcCCCEEEEEEccCC-hhhCEEEEEEEEECCCcc
Confidence 46899999999999999999999999998873 233333 2 2379999999 999999999999999988
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
...+.|.|
T Consensus 85 ~~~~~v~v 92 (92)
T cd05737 85 TVDVTVSV 92 (92)
T ss_pred eEEEEEeC
Confidence 87777654
No 32
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.54 E-value=5.6e-14 Score=99.91 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=64.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
|.+|+.+.|.|.+.|.|.|.+.|+|++.++... ..++.+. .+.|.|.++. .+|+|.|+|.|.|..|...
T Consensus 7 v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~------~~r~~~~~~~~~~~L~I~~~~-~~D~G~Y~c~a~N~~G~~~ 79 (86)
T cd05894 7 VVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET------EGRVRVESYKDLSSFVIEGAE-REDEGVYTITVTNPVGEDH 79 (86)
T ss_pred EEcCCEEEEEeeEeecCCCeEEEEECCEECccC------CCeEEEEEcCCeEEEEECCCc-cCcCEEEEEEEEeCCCcEE
Confidence 468999999999999999999999999998732 2345442 3689999999 9999999999999999988
Q ss_pred eeEEEEE
Q psy14886 77 SSAQLRV 83 (505)
Q Consensus 77 ~~~~l~v 83 (505)
..+.|.|
T Consensus 80 ~~~~l~V 86 (86)
T cd05894 80 ASLFVKV 86 (86)
T ss_pred EEEEEEC
Confidence 7777764
No 33
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.54 E-value=5.8e-14 Score=93.38 Aligned_cols=66 Identities=15% Similarity=0.348 Sum_probs=56.8
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 84 (505)
++|.|.+.|.|.|.++|+|||++|... ...+.|.|.++. .+|+|.|+|.|.|..|....++.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-----------~~~~~L~i~~v~-~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-----------HSQHSLQIKDVT-EASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-----------CCcCEEEECCCC-HHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 579999999999999999999998621 135699999999 999999999999999987777766654
No 34
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.53 E-value=6.6e-14 Score=102.19 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=68.9
Q ss_pred ceEEeeCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcEEEee--------CCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 97 SETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFE--------NGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~--------~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
..+.+.+|+++.|.|.+.| .|.|.+.|+|+|.++.......+.. ...|.|..+..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4577899999999999999 8899999999999997544433322 246999999999999999999999999
Q ss_pred eeeeEEEEEE
Q psy14886 168 DESKGRLIVL 177 (505)
Q Consensus 168 ~~~~~~l~v~ 177 (505)
....+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9888888874
No 35
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.53 E-value=1.2e-13 Score=94.58 Aligned_cols=70 Identities=33% Similarity=0.608 Sum_probs=60.0
Q ss_pred ceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 6 ~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
+++|.|.+.|.|.+.++|+|++..+.. ..++.+ ..+.|.|.+++ .+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~-------~~~~~~~~~~~l~i~~v~-~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIP-------SDYFKIVKEHNLQVLGLV-KSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCC-------CCCEEEEecCCEEEEcCC-cccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 589999999999999999999998862 334443 56789999999 99999999999999999888887764
No 36
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.53 E-value=1.1e-13 Score=98.92 Aligned_cols=75 Identities=21% Similarity=0.396 Sum_probs=64.4
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE--------CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--------DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
|+.++|.|.+.|.|++.+.|+|++..+.. ...++.+. .++|.|.++. .+|+|.|+|.|.|..|..
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~------~~~r~~~~~~~~~~~~~s~L~I~~~~-~~D~G~YtC~A~N~~G~~ 73 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP------EMSRYLVSTKEVGDEVISTLQILPTV-REDSGFFSCHAINSYGED 73 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCC------CCCcEEEEEecCCCcEEEEEEECCCC-cccCEEEEEEEEcCCCcc
Confidence 88999999999999999999999998863 12344332 1579999999 999999999999999999
Q ss_pred EeeEEEEEEe
Q psy14886 76 YSSAQLRVLT 85 (505)
Q Consensus 76 ~~~~~l~v~~ 85 (505)
...+.|.|..
T Consensus 74 ~~~~~L~V~~ 83 (88)
T cd05735 74 RGIIQLTVQE 83 (88)
T ss_pred eEEEEEEEeC
Confidence 9999999985
No 37
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.53 E-value=7.8e-14 Score=95.52 Aligned_cols=71 Identities=28% Similarity=0.554 Sum_probs=63.7
Q ss_pred eEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 106 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 106 ~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
++.|.|.+.|.|.|.++|+++|..+....++.+..++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999999887766777777788999999999999999999999999988887764
No 38
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.53 E-value=8.8e-14 Score=96.07 Aligned_cols=72 Identities=31% Similarity=0.492 Sum_probs=62.5
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 82 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 82 (505)
|+++.|.|.+.|.|.+.++|+|++..+. ...++.. ..++|.|.+++ .+|+|.|+|.|.|..|....++.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~-------~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLT-------NSSRICIWPDGSLEILNVT-KSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcc-------cCCCEEECCCCeEEEccCC-hhHCEEEEEEEECCCCceEEEEEEE
Confidence 7899999999999999999999999886 2344544 45789999999 9999999999999999988888776
Q ss_pred E
Q psy14886 83 V 83 (505)
Q Consensus 83 v 83 (505)
|
T Consensus 73 V 73 (73)
T cd04969 73 V 73 (73)
T ss_pred C
Confidence 5
No 39
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.52 E-value=7.6e-14 Score=95.78 Aligned_cols=70 Identities=31% Similarity=0.638 Sum_probs=59.9
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecC-CCcEEEeeCC----CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGS-GGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~-~~~~~~~~~~----~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.|.|+|+|..+.. ..++.+..++ +|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999999999999999874 3455554332 6999999999999999999999999999888765
No 40
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.52 E-value=1.1e-13 Score=95.55 Aligned_cols=73 Identities=41% Similarity=0.763 Sum_probs=66.3
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+.+.|.|.+.|.|.+.+.|++++..+....+.....+++|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6789999999999999999999999988777777777788999999999999999999999999988887764
No 41
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.52 E-value=1.2e-13 Score=96.64 Aligned_cols=76 Identities=26% Similarity=0.398 Sum_probs=64.1
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
|++++|.|.+.|.|.+.|.|++++..+..... ..+.....+.|.|.+++ .+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~----~~~~~~~~~~L~i~~v~-~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPP----DPRRRVDGGTLILSNVQ-PNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCC----cceEEccCCEEEECCCC-hhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 78999999999999999999999998874211 11344467899999999 99999999999999999988888876
Q ss_pred E
Q psy14886 84 L 84 (505)
Q Consensus 84 ~ 84 (505)
.
T Consensus 76 ~ 76 (76)
T cd04978 76 V 76 (76)
T ss_pred C
Confidence 3
No 42
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=1.4e-13 Score=99.13 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=64.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.+|++++|.|.+.|.|.+.++|+|++..+. ...+....++.|.|.+++ .+|+|.|+|.+.|..|.....+.
T Consensus 13 ~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~-------~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~~~~~~ 84 (88)
T cd04968 13 ALKGQNVTLECFALGNPVPQIKWRKVDGSMP-------SSAEISMSGAVLKIPNIQ-FEDEGTYECEAENIKGKDTHQGR 84 (88)
T ss_pred EeCCCcEEEEEEeeEeCCCEEEEEECCCcCC-------CccEEEEeCCEEEECCCC-cccCEEEEEEEEECCCcEEEEEE
Confidence 3589999999999999999999999887664 233344577899999999 99999999999999999888888
Q ss_pred EEE
Q psy14886 81 LRV 83 (505)
Q Consensus 81 l~v 83 (505)
|.|
T Consensus 85 l~V 87 (88)
T cd04968 85 IYV 87 (88)
T ss_pred EEE
Confidence 776
No 43
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.51 E-value=2.8e-13 Score=98.36 Aligned_cols=87 Identities=28% Similarity=0.505 Sum_probs=73.1
Q ss_pred cCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEE
Q psy14886 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 86 ~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~ 162 (505)
++|.+...+ ....+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.++.+... ++|.|.++..+|+|.|+|.|.
T Consensus 2 ~~~~~~~~p--~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 2 LPATILTKP--RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCCcccccC--ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence 356666655 557899999999999999999999999999998876666655433 379999999999999999999
Q ss_pred cCCCceeeeEEE
Q psy14886 163 NVHGMDESKGRL 174 (505)
Q Consensus 163 ~~~g~~~~~~~l 174 (505)
|..|.....+.|
T Consensus 80 N~~G~~~~~~~l 91 (92)
T cd05747 80 NSEGKQEAQFTL 91 (92)
T ss_pred cCCCCEeEEEEe
Confidence 999988877665
No 44
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.51 E-value=1.3e-13 Score=96.67 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=62.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.+|+.++|.|.+.+. .+.+.|+|||.+|. ...++.+.+.+|.|.+++ .+|+|.|+|.+.|..|.....+.
T Consensus 6 ~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~-------~~~~~~~~~~~L~I~~~~-~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 6 AHPGDLLQLRCRLRDD-VQSINWTKDGVQLG-------ENNRTRITGEEVQIKDAV-PRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred ecCCCCEEEEEEecCC-CceEEEeeCCcCCC-------CCceEEEeCCEEEECCCC-hhhCEEEEEEEeCCCCcccEEEE
Confidence 4789999999999885 56899999999886 345677778899999999 99999999999998887666655
Q ss_pred EEE
Q psy14886 81 LRV 83 (505)
Q Consensus 81 l~v 83 (505)
|.|
T Consensus 77 v~V 79 (79)
T cd04973 77 VNV 79 (79)
T ss_pred EeC
Confidence 543
No 45
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.51 E-value=1.9e-13 Score=95.49 Aligned_cols=76 Identities=21% Similarity=0.403 Sum_probs=63.2
Q ss_pred CceEEEEEEecc--CCCeEEEEECCEECcCCCCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 5 ADLTWTCEAFGV--PDVTYSWFRNGELLNSETLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 5 ~~~~l~C~~~~~--p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
+++.|.|.+.+. +++.|.|+|||++|... ....++.. ..+.|.|.+++ ..|+|.|+|.|.|..+....
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~----~~~~~~~~~~~~~~~~~L~I~nv~-~~dsG~YtC~a~n~~~~~~a 75 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQ----KDGDHFERVGGQDSAGDLMIRSIQ-LKHAGKYVCMVQTSVDKLSA 75 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECccc----CCCccEEEeccCCCCCcEEEecCC-HHHCEEEEEEEEcccCceEE
Confidence 578999999774 47899999999999631 02335544 34689999999 99999999999999999999
Q ss_pred eEEEEEEe
Q psy14886 78 SAQLRVLT 85 (505)
Q Consensus 78 ~~~l~v~~ 85 (505)
++.|.|..
T Consensus 76 ~a~L~V~~ 83 (85)
T cd05853 76 AADLIVRG 83 (85)
T ss_pred EEEEEEec
Confidence 99999985
No 46
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.51 E-value=1.6e-13 Score=100.37 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=63.5
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCC-CCcE--EEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLED-QDRY--FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~-~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
..|+.+.|.|.+.|+|.|.+.|+|||.+|......... .... ....++|.|.+++ .+|+|.|+|.|.|..|....+
T Consensus 16 ~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~-~~D~G~Ytc~A~N~~g~~~~t 94 (101)
T cd05859 16 NLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAK-EEDSGLYTALAQNEDAVKSYT 94 (101)
T ss_pred ecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCC-HHHCEEEEEEEEcCCceEEEE
Confidence 56899999999999999999999999998742110000 0000 0123689999999 999999999999999998888
Q ss_pred EEEEEE
Q psy14886 79 AQLRVL 84 (505)
Q Consensus 79 ~~l~v~ 84 (505)
+.|.|.
T Consensus 95 ~~l~V~ 100 (101)
T cd05859 95 FALQIQ 100 (101)
T ss_pred EEEEEE
Confidence 888775
No 47
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.51 E-value=2.1e-13 Score=92.24 Aligned_cols=68 Identities=29% Similarity=0.495 Sum_probs=56.6
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
|++++|.|.+.|.|.|.|.|+|++.++.. ..++......|.|.++. |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~-------~~~~~~~~~~L~i~~~~---d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTK-------EDEMPVGRNVLELTNIY---ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCC-------ccceecCccEEEEeccc---cCeeEEEEEEeCCCEEEEEEEE
Confidence 78999999999999999999999998862 33444455679998866 7899999999999988777665
No 48
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.50 E-value=2.4e-13 Score=98.59 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=68.2
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC----CCEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~----~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
..+.+.+|+++.|.|.+.|.|.|++.|+++|..+....++.+... ..|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 456789999999999999999999999999999877666555322 2599999999999999999999999988877
Q ss_pred EEEE
Q psy14886 173 RLIV 176 (505)
Q Consensus 173 ~l~v 176 (505)
.+.|
T Consensus 89 ~v~v 92 (92)
T cd05737 89 TVSV 92 (92)
T ss_pred EEeC
Confidence 6654
No 49
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.50 E-value=2.5e-13 Score=93.85 Aligned_cols=70 Identities=27% Similarity=0.421 Sum_probs=58.4
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE-C----CeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-D----NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~-~----~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
++|.|.+.|.|.|.+.|+|++..+.. ...++.+. . .+|.|.+++ .+|+|.|+|.|.|..|.....+.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~------~~~r~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTY------NTDRISLYQDNCGRICLLIQNAN-KEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCC------CCCcEEEEEcCCCeEEEEECCCC-cccCEEEEEEEEcCCCcEEEEEEE
Confidence 58999999999999999999998863 22345442 2 169999999 999999999999999999888887
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 74 ~v 75 (75)
T cd05744 74 DV 75 (75)
T ss_pred eC
Confidence 64
No 50
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.49 E-value=3.5e-13 Score=93.84 Aligned_cols=73 Identities=27% Similarity=0.568 Sum_probs=62.7
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCC--cEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+++.|.|.+.|.|.|+++|+++|..+.... ......++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 6889999999999999999999999886432 123345678999999999999999999999999988888876
No 51
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.49 E-value=3.2e-13 Score=96.23 Aligned_cols=79 Identities=35% Similarity=0.638 Sum_probs=68.9
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
.+..+..|+++.|.|.+.|.|.|.+.|+++|..+....+... .++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 7 SDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred CccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 446688999999999999999999999999999876655544 5678999999999999999999999999888877754
No 52
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.48 E-value=4.1e-13 Score=96.66 Aligned_cols=79 Identities=33% Similarity=0.598 Sum_probs=67.2
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
....+.+|+.+.|.|.+.|.|.+.+.|++++..+....... ..++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 9 KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 44568899999999999999999999999887665443332 45678999999999999999999999999988888876
No 53
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.48 E-value=2.7e-13 Score=97.19 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=63.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE--EECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF--IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~--~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
|.+|+.++|.|.+.|.|.+.+.|+|+|..+..... ...+. ....+|.|.+++ .+|+|.|+|.|.|..|.....
T Consensus 6 v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~----~~~~~~~~~~~~l~i~~~~-~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05857 6 VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHR----IGGYKVRNQHWSLIMESVV-PSDKGNYTCVVENEYGSINHT 80 (85)
T ss_pred cCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCc----eeeeEEeCCceEEEEccCC-cccCEEEEEEEEeCCCEEEEE
Confidence 57899999999999999999999999999873211 11122 234579999999 999999999999999998888
Q ss_pred EEEEE
Q psy14886 79 AQLRV 83 (505)
Q Consensus 79 ~~l~v 83 (505)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05857 81 YHLDV 85 (85)
T ss_pred EEEEC
Confidence 87765
No 54
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.48 E-value=8.3e-13 Score=93.90 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=67.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.+... ..|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 3467899999999999999999999999999988653 34544432 4699999999999999999999999988887
Q ss_pred EEEE
Q psy14886 173 RLIV 176 (505)
Q Consensus 173 ~l~v 176 (505)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 7754
No 55
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.48 E-value=3.6e-13 Score=93.48 Aligned_cols=73 Identities=25% Similarity=0.490 Sum_probs=62.2
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCC--CcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~--~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+++.|.|.+.|.|.|+|+|+++|+++... .......++.|.|.+++..|+|.|+|.|.|..|.....+.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 678999999999999999999999988532 2222334457999999999999999999999999999998877
No 56
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.48 E-value=3.4e-13 Score=91.07 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=56.4
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 82 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 82 (505)
++|.|.+.|.|.|.+.|+|++.++.. ...++...+.+|.|.+++ .+|+|.|+|.|.+..........++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~------~~~~~~~~~~~L~I~~v~-~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAE------KCSRYHVDGYSLVIKDVT-EEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCC------CCcEEEeCCCEEEECcCC-HHHCEEEEEEEEccccceEeeEEEE
Confidence 47999999999999999999999873 224566667799999999 9999999999999876655544433
No 57
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.48 E-value=4.3e-13 Score=98.23 Aligned_cols=77 Identities=27% Similarity=0.543 Sum_probs=65.6
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
.+|+++.|.|.+.|.|.+.+.|+|+|..+... ..++.. .++.|.|.+++ .+|+|.|+|.|.|..|.....+
T Consensus 16 ~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~------~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 16 NLGQSVTLACDADGFPEPTMTWTKDGEPIESG------EEKYSFNEDGSEMTILDVD-KLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred eCCCCEEEEEeccEeCCCEEEEEECCEECcCC------CCEEEEeCCCCEEEECCCC-hhhCEEEEEEEEcCCCeEEEEE
Confidence 57999999999999999999999999988632 234433 34579999999 9999999999999999988888
Q ss_pred EEEEEe
Q psy14886 80 QLRVLT 85 (505)
Q Consensus 80 ~l~v~~ 85 (505)
.|.|..
T Consensus 89 ~L~V~~ 94 (95)
T cd05730 89 HLKVFA 94 (95)
T ss_pred EEEEEe
Confidence 888864
No 58
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.48 E-value=3.3e-13 Score=91.07 Aligned_cols=69 Identities=19% Similarity=0.411 Sum_probs=56.9
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 84 (505)
++|.|.+.|.|.+.++|+|||+++.. ..++ ..+..|.|.++. .+|+|.|+|.|.|..|.......+.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~-------~~~~-~~~~~L~I~~v~-~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVL-------NHTF-KRGVHLTIYEVT-EKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCC-------CCEE-ccCCEEEECcCC-HHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 47999999999999999999999873 2222 235689999999 999999999999999987776665553
No 59
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.48 E-value=4.1e-13 Score=96.45 Aligned_cols=73 Identities=32% Similarity=0.495 Sum_probs=61.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS- 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~- 77 (505)
|++|++++|.|.+.|. .+.+.|+|++..+.. .++.+ .+++|.|.+++ .+|+|.|+|.|.|..|...+
T Consensus 15 v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~--------~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~S~ 84 (91)
T cd05740 15 PEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP--------PRLQLSNDNRTLTFNNVT-RSDTGHYQCEASNEVSNMTSD 84 (91)
T ss_pred cccCCcEEEEEEeCCC-CCEEEEEECCEECCC--------CCEEEeCCCCEEEECcCC-hhhCEEEEEEEEcCCCCEEee
Confidence 5789999999999999 999999999998762 23333 45689999999 99999999999999998766
Q ss_pred eEEEEE
Q psy14886 78 SAQLRV 83 (505)
Q Consensus 78 ~~~l~v 83 (505)
.+.|.|
T Consensus 85 ~~~L~V 90 (91)
T cd05740 85 PYILNV 90 (91)
T ss_pred eEEEEe
Confidence 455655
No 60
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.48 E-value=6.5e-13 Score=94.21 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=62.0
Q ss_pred CceEEEEEEeccCCC--eEEEEECCEECcCCCCCCCCCCcE---EE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 5 ADLTWTCEAFGVPDV--TYSWFRNGELLNSETLPLEDQDRY---FI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 5 ~~~~l~C~~~~~p~~--~~~W~~~~~~l~~~~~~~~~~~~~---~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
+.++|.|.+.|.|.+ .+.|+|||.++..... ..++ .. ..++|.|.+++ ..|+|.|+|.|.|..|....
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~----~~~~~~~~~~~~~~~L~I~~v~-~~D~G~YtC~A~n~~g~~~~ 75 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKP----NGHYRRMEVKETIGDLVIVNAQ-LSHAGTYTCTAQTVVDSASA 75 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCC----CCcEEEEEecceEeEEEEccCC-hhhCeEEEEEEecCCCCEEE
Confidence 578999999998865 6899999998863211 2232 21 34799999999 99999999999999999999
Q ss_pred eEEEEEEe
Q psy14886 78 SAQLRVLT 85 (505)
Q Consensus 78 ~~~l~v~~ 85 (505)
++.|.|..
T Consensus 76 ~~~L~V~~ 83 (85)
T cd05854 76 SATLVVRG 83 (85)
T ss_pred EEEEEEEC
Confidence 99999985
No 61
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.47 E-value=2.4e-13 Score=93.50 Aligned_cols=70 Identities=29% Similarity=0.581 Sum_probs=59.7
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCC-CcEEEeeCC----CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~~----~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.|.|+|++..+... .++.+..++ .|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999988653 455554443 5999999999999999999999999998888764
No 62
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.47 E-value=5e-13 Score=96.79 Aligned_cols=76 Identities=25% Similarity=0.460 Sum_probs=60.7
Q ss_pred CCCCCceEEEEEEeccCC-CeEEEEE-CCEECcCCCCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEEEEEEccc-
Q psy14886 1 MDNQADLTWTCEAFGVPD-VTYSWFR-NGELLNSETLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQCRAKNQL- 72 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~-~~~~W~~-~~~~l~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~C~~~~~~- 72 (505)
+.+|+.++|.|.+.|.|. +.+.|++ ++..+.. ...++.+. .++|.|.+++ .+|+|.|+|.|.|..
T Consensus 12 v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~------~~~r~~v~~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 12 ISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP------NQQRISVVRNDDYSSTLTIYNAN-IDDAGIYKCVVSNEDE 84 (96)
T ss_pred ECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc------cCCeEEEEeCCCCceEEEEeccC-hhhCEEEEEEEEcCCC
Confidence 468999999999999984 7999998 7766652 13344432 2589999999 999999999999986
Q ss_pred CceEeeEEEEE
Q psy14886 73 KTRYSSAQLRV 83 (505)
Q Consensus 73 ~~~~~~~~l~v 83 (505)
|....++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 77777777765
No 63
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.47 E-value=2.9e-13 Score=92.12 Aligned_cols=67 Identities=27% Similarity=0.532 Sum_probs=57.8
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
|.|.|.+.|.|.+.+.|+|++.++. ...++.+ .+++|.|.+++ .+|+|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~-------~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVT-------ESGKFHISPEGYLAIRDVG-VADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECC-------CCCCEEECCCCEEEECcCC-hhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999999999999999999886 3345555 46799999999 999999999999999998776655
No 64
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.47 E-value=7.5e-13 Score=95.08 Aligned_cols=79 Identities=25% Similarity=0.397 Sum_probs=64.6
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe-eCCCEEEcCCCCCCCEEEEEEEEcCCCceeee-EE
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GR 173 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~ 173 (505)
..+..+.+|++++|.|.+.|. .+.+.|++++..+... +..+. .+++|.|.+++.+|.|.|.|.|.|..|...+. +.
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 345578999999999999999 9999999999987653 34433 34579999999999999999999999987654 55
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
|.|
T Consensus 88 L~V 90 (91)
T cd05740 88 LNV 90 (91)
T ss_pred EEe
Confidence 655
No 65
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.47 E-value=2.6e-13 Score=92.39 Aligned_cols=68 Identities=34% Similarity=0.593 Sum_probs=61.0
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
|.|.|.+.|.|.|.+.|+++|..+....++.+..++.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47999999999999999999998877777777777889999999999999999999999998877655
No 66
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.46 E-value=3.8e-13 Score=92.10 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=58.3
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
+.|.|.+.|.|.+.+.|+|++..+... ..+....+++|.|.+++ .+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~------~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPN------RTKKLNNNKTLQLDNVL-ESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCC------ceeEEcCCCEEEEcccC-HHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 579999999999999999999876521 12233356799999999 99999999999999999888777766
No 67
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.46 E-value=6e-13 Score=95.17 Aligned_cols=78 Identities=29% Similarity=0.472 Sum_probs=66.0
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEEee--C-----CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFE--N-----GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~--~-----~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
|+.+.|.|.+.|.|.+.+.|++++..+... .++.+.. . .+|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 789999999999999999999999888643 3444332 1 3599999999999999999999999999999999
Q ss_pred EEeCCe
Q psy14886 176 VLHGPS 181 (505)
Q Consensus 176 v~~~p~ 181 (505)
|..+|.
T Consensus 81 V~~~P~ 86 (88)
T cd05735 81 VQEPPD 86 (88)
T ss_pred EeCCCC
Confidence 987654
No 68
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.46 E-value=4.4e-13 Score=97.09 Aligned_cols=80 Identities=24% Similarity=0.434 Sum_probs=64.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCC-CeEEEEE-CCEEecC-CCcEEEeeC----CCEEEcCCCCCCCEEEEEEEEcCC-Cce
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPK-PKFVWKK-DGNIIGS-GGRRKIFEN----GNLLISPVSRDDSGIYSCTATNVH-GMD 168 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~-~~i~W~~-~g~~~~~-~~~~~~~~~----~~l~i~~v~~~d~G~y~C~~~~~~-g~~ 168 (505)
....+..|++++|.|.+.|.|. |.+.|++ ++..+.. +.++....+ ++|.|.++..+|+|.|+|.|.|.. |..
T Consensus 8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~ 87 (96)
T cd05865 8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGES 87 (96)
T ss_pred CccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcE
Confidence 3446889999999999999985 6999998 7876654 334444332 469999999999999999999996 888
Q ss_pred eeeEEEEE
Q psy14886 169 ESKGRLIV 176 (505)
Q Consensus 169 ~~~~~l~v 176 (505)
..++.|.|
T Consensus 88 ~~s~~l~v 95 (96)
T cd05865 88 EATVNVKI 95 (96)
T ss_pred EEEEEEEE
Confidence 88888776
No 69
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.46 E-value=9.2e-13 Score=95.17 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=62.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE----EECCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF----IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~----~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|+.++|.|.+.|.|.+.+.|++++..+... .+.. ....+|.|.+++ .+|.|.|+|.|.|..|...
T Consensus 12 v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~-------~~~~~~~~~~~~~L~I~~v~-~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 12 VYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQT-------RTDTLETTVDIYNLQLSNIT-SETQTTVTCTAENPVGQAN 83 (90)
T ss_pred EcCCCcEEEEEEEEEcCCCeEEEEECCEEccCC-------ccEEEEecCCEEEEEEecCC-cccCEEEEEEEECCCCcee
Confidence 468999999999999999999999999987632 2211 123589999999 9999999999999999988
Q ss_pred eeEEEEE
Q psy14886 77 SSAQLRV 83 (505)
Q Consensus 77 ~~~~l~v 83 (505)
..+.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 8877754
No 70
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.46 E-value=7e-13 Score=92.61 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=62.8
Q ss_pred CeEEEEeecCCC--CCCeEEEEECCEEecC--C-CcEEE----eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 105 GNVTIFCNPEAA--PKPKFVWKKDGNIIGS--G-GRRKI----FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 105 ~~v~l~C~~~~~--p~~~i~W~~~g~~~~~--~-~~~~~----~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
+++.|.|.+.+. +.+.+.|++||+++.. . .++.. ...+.|.|.+++..|+|.|+|.|.|..+.....+.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999764 4779999999999962 2 24333 2346799999999999999999999999999999999
Q ss_pred EEeCC
Q psy14886 176 VLHGP 180 (505)
Q Consensus 176 v~~~p 180 (505)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 97665
No 71
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.45 E-value=2.9e-13 Score=97.66 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=63.8
Q ss_pred CCCCCceEEEEEEec-----cCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFG-----VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-----~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+.+.|.|.+.+ .|.+.|.|+|++.++.... ....|+...+++|.|.++. .+|+|.|+|.+.|..|..
T Consensus 11 v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~---~~~~r~~~~~~~L~I~~~~-~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 11 VLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT---EERSRMHQQKDLLWFLPAA-LEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc---cccceeeecCCeEEEccCC-cccCeEEEEEEcCCCccE
Confidence 458999999999988 6888999999987654211 1234555567899999999 999999999999999998
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
...+.|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 88777764
No 72
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.45 E-value=5.4e-13 Score=91.00 Aligned_cols=68 Identities=31% Similarity=0.458 Sum_probs=57.3
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE-EECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF-IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
++|.|.+.|.|.+.+.|+|++..+.. .++. ..+++|.|.+++ .+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~--------~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK--------GRAEILDDKSLKIRNVT-AGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC--------CcEEEeeCCEEEECcCC-hhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999999999999999999876652 2333 356799999999 99999999999999999888777764
No 73
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.45 E-value=1.1e-12 Score=95.08 Aligned_cols=70 Identities=34% Similarity=0.597 Sum_probs=58.7
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
+|+.++|.|.+.|.|.+.|+|+|+|.++... ...++...+++|.|.++...+|+|.|+|.|.|..|...+
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~-----~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTE-----SDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccC-----CCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 5889999999999999999999999988632 223566677899999984269999999999999998755
No 74
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.44 E-value=9.9e-13 Score=91.95 Aligned_cols=73 Identities=30% Similarity=0.594 Sum_probs=63.0
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCc--EEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+.+.|.|.+.|.|.|.+.|+++|..+..... ......+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 68899999999999999999999998865432 23344578999999999999999999999999988888876
No 75
>KOG3515|consensus
Probab=99.44 E-value=1.8e-11 Score=117.33 Aligned_cols=456 Identities=12% Similarity=0.054 Sum_probs=230.8
Q ss_pred CCCceEEEEEEe--ccCCCeEEEEECCEECcCCCCCCCC-----CCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 3 NQADLTWTCEAF--GVPDVTYSWFRNGELLNSETLPLED-----QDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 3 ~G~~~~l~C~~~--~~p~~~~~W~~~~~~l~~~~~~~~~-----~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
.+..+.+.|.+. +.|.+++.|.+++............ .+......+.+.+...+ .++.|+|+|.+.+.....
T Consensus 111 ~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~R-ka~~g~~tC~A~nr~s~~ 189 (741)
T KOG3515|consen 111 DKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSR-KADNGNYTCPANNRNSPG 189 (741)
T ss_pred cCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEE-ecCCceeEcccccccCcc
Confidence 567899999664 4678999999988755433211111 11122345678899999 999999999998753332
Q ss_pred ---EeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcEEEeeC-----CCEEE
Q psy14886 76 ---YSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFEN-----GNLLI 146 (505)
Q Consensus 76 ---~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~~-----~~l~i 146 (505)
-....+.|......+..........+.+|+.+.|.|.+.+ .|.+.++|+++..............+ .++.+
T Consensus 190 l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~ 269 (741)
T KOG3515|consen 190 LSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVL 269 (741)
T ss_pred ccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccc
Confidence 2234444443333333333233345889999999998654 58889999998876654311111111 12333
Q ss_pred cCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCC
Q psy14886 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 226 (505)
Q Consensus 147 ~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~ 226 (505)
..-...+.-...|.+.| -......+.+..++..............|....+.|...+..+ ...+.|+++.......
T Consensus 270 ~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p-~~~i~w~~~~~~~~~~ 345 (741)
T KOG3515|consen 270 RVGRQDLQAQLKCKASN---LLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKP-PAHIAWYKDTKMPKGS 345 (741)
T ss_pred cccccchhhhhhccccC---ccccceeeecccccccccccCcccccccccccccceeccCCCC-ccceeeeccCcccccc
Confidence 33333444466799987 1122233344344443333444455778889999997766433 4567798855444322
Q ss_pred CCCcccC-CeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCC----ceEEEEEeCCeEEEEeec
Q psy14886 227 DLNELET-PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG----GVQVVEVHKTSATIQWTD 301 (505)
Q Consensus 227 ~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~----~~~~~~~~~~~v~l~w~~ 301 (505)
....... .......-.+.+......+.|.|+|.+.+.......+..+.+...|.+.. .+.+.....+...
T Consensus 346 ~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~----- 420 (741)
T KOG3515|consen 346 QKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQA----- 420 (741)
T ss_pred cCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCcccc-----
Confidence 1111111 11111112344555667889999999988776544443333332222211 1111111111111
Q ss_pred CCCCCCCCceEEEEEEeCCCCCeEEeeeccccceee---eecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCC
Q psy14886 302 GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD---RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 378 (505)
Q Consensus 302 ~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~ 378 (505)
.++..+ .+.......|+.....+...... .....-..-... +..-+...|.+.|.|+.|.......
T Consensus 421 -----~~~~~~--~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~-v~~~d~g~y~~tatns~gg~~~~~~--- 489 (741)
T KOG3515|consen 421 -----APLPVR--GAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVN-VSRSDGGSYGLTATNSPGGAQAYLL--- 489 (741)
T ss_pred -----ccCccc--CCCcccchhheecceecccccCceEEeeccccccccce-eeeccCCcceeeeccCCCceeeEEe---
Confidence 111111 11111122333322211100000 000000000111 3445567788899999887653221
Q ss_pred ccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCc----------------EEEEeeec
Q psy14886 379 YNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEF----------------QSETLKEY 442 (505)
Q Consensus 379 ~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~----------------~~~~~~~~ 442 (505)
.-....|..-+.+..+.....++ .+-|.+ .+.+.....|..+++.....+. ........
T Consensus 490 -~~~~~sp~~~~~~~~~~~~~~ns-~~~~~~---q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 564 (741)
T KOG3515|consen 490 -LGVHTSPHNHHLQDQVEGATGNS-VDGECM---QDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSS 564 (741)
T ss_pred -eccccCCcccccccccccCCCCc-ccceee---ccccccchhhhcccccCCCCcccccccccccccCCccceeeccccc
Confidence 11223333333344444455556 344443 3444445566655555431110 11111111
Q ss_pred CceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEee
Q psy14886 443 GNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484 (505)
Q Consensus 443 ~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t 484 (505)
.-...+.+..+++.|-..|..++.|+-..+.......+....
T Consensus 565 ~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~ 606 (741)
T KOG3515|consen 565 LQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQ 606 (741)
T ss_pred ccccceEEeecCCCCccccceEEEecccccccccCCceeeec
Confidence 122345556666777788888888877766666555555443
No 76
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.44 E-value=1.3e-12 Score=91.03 Aligned_cols=70 Identities=33% Similarity=0.631 Sum_probs=56.0
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
++|.|.+.|.|.+.++|+|+|.++... ..++.. ..++|.|.+++ .+|+|.|+|.|.|..|...++..+.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~------~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDG------QGNYSVSSKERTLTLRSAG-PDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCC------CccEEEeCCCCEEEEeeCC-cccCEEEEEEEEeCCCeEeeCceEEE
Confidence 589999999999999999999988632 223333 34689999999 99999999999999998765444433
No 77
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.44 E-value=4.9e-13 Score=91.54 Aligned_cols=70 Identities=26% Similarity=0.476 Sum_probs=59.1
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.+.|++++..+..........+++|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999999999988775543333345668999999999999999999999999888887776
No 78
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.44 E-value=1.1e-12 Score=91.03 Aligned_cols=70 Identities=21% Similarity=0.354 Sum_probs=58.9
Q ss_pred ceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 6 ~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
.+.|.|.+.|.|.+.+.|+|+|..+. ...++.+. ...|.|.+++ .+|+|.|+|.|.|..|....++.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLK-------LSGRVQIETTASSTSLVIKNAE-RSDSGKYTLTLKNPAGEKSATINV 72 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcC-------CCCeEEEEECCCeEEEEECCCC-cCcCEEEEEEEECCCccEEEEEEE
Confidence 47899999999999999999999985 23344432 4589999999 999999999999999998887777
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 73 ~V 74 (74)
T cd05748 73 KV 74 (74)
T ss_pred EC
Confidence 64
No 79
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.44 E-value=5.5e-13 Score=88.70 Aligned_cols=65 Identities=28% Similarity=0.404 Sum_probs=56.0
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.+.|+|+|..+... ...+.|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 479999999999999999999988632 12457999999999999999999999998877776665
No 80
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.44 E-value=1.1e-12 Score=90.76 Aligned_cols=70 Identities=30% Similarity=0.613 Sum_probs=59.0
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCC-CcEEEeeCC----CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~~~~----~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.+.|+|++..+..+ .++.+...+ +|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999988743 455544332 5999999999999999999999999988887764
No 81
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.44 E-value=9.5e-13 Score=96.34 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=67.6
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe---------eCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---------ENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~---------~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
...+..|+.+.|.|.+.|.|.|.+.|+|+|.++..+.+.... ...+|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 456888999999999999999999999999998765433221 12469999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy14886 169 ESKGRLIVL 177 (505)
Q Consensus 169 ~~~~~l~v~ 177 (505)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888774
No 82
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.43 E-value=1.3e-12 Score=94.74 Aligned_cols=73 Identities=19% Similarity=0.388 Sum_probs=61.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|+.+.|.|.+.|.|.+.+.|+|+|..+. ...++.+. .++|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 15 ~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~-------~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~N~~G~~~ 86 (92)
T cd05747 15 VSEGESARFSCDVDGEPAPTVTWMREGQIIV-------SSQRHQITSTEYKSTFEISKVQ-MSDEGNYTVVVENSEGKQE 86 (92)
T ss_pred EeCCCcEEEEEEEeecCCCEEEEEECCEECC-------CCCcEEEEEcCCeeEEEECCCC-cccCEeEEEEEEcCCCCEe
Confidence 4689999999999999999999999999876 23344442 3589999999 9999999999999999877
Q ss_pred eeEEE
Q psy14886 77 SSAQL 81 (505)
Q Consensus 77 ~~~~l 81 (505)
..+.|
T Consensus 87 ~~~~l 91 (92)
T cd05747 87 AQFTL 91 (92)
T ss_pred EEEEe
Confidence 66654
No 83
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.43 E-value=9.2e-13 Score=96.84 Aligned_cols=80 Identities=21% Similarity=0.378 Sum_probs=61.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC--CEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN--GELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~--~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
+.+|++++|.|.+.|.|.+.|.|+|+ +..+.... ....+|+.+. ..+|.|.+++ .+|+|.|+|.|.|..|.
T Consensus 13 ~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~--~~~~~r~~v~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~ 89 (98)
T cd05870 13 TVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGD--KSPDGRIEVKGQHGESSLHIKDVK-LSDSGRYDCEAASRIGG 89 (98)
T ss_pred EcCCCcEEEEEecccCCCCeEEEEECCCCceeccCC--cCcCceEEEeecCCeeEEEEeeCC-cCCCEEEEEEEeccCCc
Confidence 46899999999999999999999994 44332110 0123455553 3589999999 99999999999999998
Q ss_pred eEeeEEEEE
Q psy14886 75 RYSSAQLRV 83 (505)
Q Consensus 75 ~~~~~~l~v 83 (505)
...++.|.|
T Consensus 90 ~~~~~~l~~ 98 (98)
T cd05870 90 HQKSMYLDI 98 (98)
T ss_pred ceeEEEEeC
Confidence 887777654
No 84
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.43 E-value=1.2e-12 Score=94.61 Aligned_cols=81 Identities=26% Similarity=0.385 Sum_probs=65.0
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCC-CCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSE-TLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~-~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
|+.++|.|.+.+.|.+.+.|+|++..+... ........++.+ .+++|.|.+++ .+|+|.|+|.+.|..|.....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQ-RSDVGYYICQTLNVAGSILTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCC-hhhCEEEEEEEEcCCCceEEEEEE
Confidence 789999999999999999999987653210 000112456665 36789999999 999999999999999999999999
Q ss_pred EEEe
Q psy14886 82 RVLT 85 (505)
Q Consensus 82 ~v~~ 85 (505)
.|..
T Consensus 80 ~V~~ 83 (90)
T cd05726 80 EVTD 83 (90)
T ss_pred EEee
Confidence 9986
No 85
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.43 E-value=1.5e-12 Score=93.21 Aligned_cols=74 Identities=26% Similarity=0.544 Sum_probs=58.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE-CCEECcCCCCCCCCCCcEEEE-CC---eEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFIQ-DN---VLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~-~~~~l~~~~~~~~~~~~~~~~-~~---~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|++++|.|.+.|.|. .+.|++ ++.++. ...|+.+. ++ +|.|.+++ .+|+|.|+|.|.|..|..
T Consensus 12 v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~-------~~~r~~~~~~g~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 12 LSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV-------SSQRVVVQKEGVRSRLTIYNAN-IEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec-------CCCCEEEEeCCCeeEEEEecCC-hHHCEEEEEEEEcCCCcE
Confidence 468999999999999987 999998 466665 23456543 33 89999999 999999999999998875
Q ss_pred E-eeEEEEE
Q psy14886 76 Y-SSAQLRV 83 (505)
Q Consensus 76 ~-~~~~l~v 83 (505)
. .++.|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 4 3455544
No 86
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.43 E-value=2.3e-12 Score=93.53 Aligned_cols=70 Identities=31% Similarity=0.467 Sum_probs=58.4
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
.|++++|.|.+.|+|.+.|+|++||..+... ...++.+.+++|.|.++....|+|.|+|.|.|..|...+
T Consensus 18 ~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~-----~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 18 PEEKVTLGCRARASPPATYRWKMNGTEIKFA-----PESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CCCeEEEEeEceeCCCCEEEEEECCEECccC-----CCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 3578999999999999999999999998632 234666778899998865258999999999999998765
No 87
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.43 E-value=1.3e-12 Score=94.44 Aligned_cols=75 Identities=25% Similarity=0.484 Sum_probs=62.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--EC---CeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QD---NVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~---~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+.+.|.|.+.+.|.+.+.|+|++..+.. ..++.. .. .+|.|.+++ .+|+|.|+|.|.|..|..
T Consensus 13 v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~-------~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 13 IMEGKTLNLTCTVFGNPDPEVIWFKNDQDIEL-------SEHYSVKLEQGKYASLTIKGVT-SEDSGKYSINVKNKYGGE 84 (92)
T ss_pred EcCCCEEEEEEEEEEeCCCeEEEEECCEECCC-------CCCEEEEEcCCCEEEEEECCCC-hhhCEEEEEEEEeCCCce
Confidence 46899999999999999999999999998763 233322 22 379999999 999999999999999998
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
...+.|.|
T Consensus 85 ~~~~~v~~ 92 (92)
T cd05891 85 TVDVTVSV 92 (92)
T ss_pred eeEEEEEC
Confidence 88777754
No 88
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.43 E-value=1.5e-12 Score=95.56 Aligned_cols=79 Identities=27% Similarity=0.427 Sum_probs=62.6
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
+.|++++|.|.+.|.|.+.++|++++..+..... ...+++.+. .++|.|.+++ .+|+|.|+|.|.|..|....
T Consensus 15 ~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~--~~~~~~~v~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 15 ELEEQITLTCEASGDPIPSITWRTSTRNISSEEK--TLDGHIVVRSHARVSSLTLKYIQ-YTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred EcCCCEEEEEEeeEeCCCEEEEEECCccccCCcc--ccCccEEEEcCccEEEEEEecCc-cCcCEEEEEEEecCCCCeeE
Confidence 3589999999999999999999999887653211 112344432 2589999999 99999999999999999888
Q ss_pred eEEEEE
Q psy14886 78 SAQLRV 83 (505)
Q Consensus 78 ~~~l~v 83 (505)
.+.|.|
T Consensus 92 ~~~l~v 97 (97)
T cd05869 92 SMYLEV 97 (97)
T ss_pred EEEEEC
Confidence 877764
No 89
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.43 E-value=1.5e-12 Score=91.08 Aligned_cols=72 Identities=29% Similarity=0.401 Sum_probs=59.4
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|++++|.|.+.|.|.+.+.|++++..+. ...++.+. .+.|.|.+++ .+|+|.|+|.|.|..|.....+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~-------~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~~~~ 72 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVP-------DSARVSITSEGGYGTLTIRDVK-ESDQGAYTCEAINTRGMVFGIP 72 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECC-------CCCCEEEEECCCEEEEEECCCC-hHHCEEEEEEEEecCCEEEecc
Confidence 7899999999999999999999998876 23444331 2579999999 9999999999999999887765
Q ss_pred EEEE
Q psy14886 80 QLRV 83 (505)
Q Consensus 80 ~l~v 83 (505)
.+.+
T Consensus 73 ~~~~ 76 (78)
T cd05743 73 DGIL 76 (78)
T ss_pred cEEE
Confidence 5443
No 90
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.42 E-value=1.9e-12 Score=91.80 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=62.2
Q ss_pred CeEEEEeecCCCCCC--eEEEEECCEEecCC---CcEEE----eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 105 GNVTIFCNPEAAPKP--KFVWKKDGNIIGSG---GRRKI----FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 105 ~~v~l~C~~~~~p~~--~i~W~~~g~~~~~~---~~~~~----~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
++++|.|.+.|.|.+ .+.|+++|..+... .++.. ...++|.|.+++..|+|.|+|.|.|..|...+.+.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999876 68999999887542 22211 1245799999999999999999999999999999999
Q ss_pred EEeCC
Q psy14886 176 VLHGP 180 (505)
Q Consensus 176 v~~~p 180 (505)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 97654
No 91
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.42 E-value=1.8e-12 Score=93.59 Aligned_cols=76 Identities=34% Similarity=0.577 Sum_probs=64.8
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEe--------cCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~--------~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
|+++.|.|.+.|.|.|.+.|+++|..+ ....++.+..++.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 688999999999999999999987643 224455665677899999999999999999999999999999999
Q ss_pred EEeC
Q psy14886 176 VLHG 179 (505)
Q Consensus 176 v~~~ 179 (505)
|...
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 8653
No 92
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.42 E-value=1.8e-12 Score=89.89 Aligned_cols=73 Identities=29% Similarity=0.621 Sum_probs=62.9
Q ss_pred CCeEEEEeecCCCCCCeEEEEE-CCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~-~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+.....+++|.|..+...|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6889999999999999999997 677776666666667788999999999999999999999998877776654
No 93
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.42 E-value=2e-12 Score=89.30 Aligned_cols=71 Identities=32% Similarity=0.520 Sum_probs=57.6
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceE-eeEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRY-SSAQLRV 83 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v 83 (505)
++|.|.+.|.|.+.|+|+|++.++... ...++.. .+++|.|.+++ .+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~-----~~~~~~~~~~g~L~i~~~~-~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTT-----SNGRIKQLRSGALQIENSE-ESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccC-----CCCCEEEcCCcEEEECCCC-hhhCEEEEEEEECCCCceEcccEEEEE
Confidence 479999999999999999999987632 2345554 46789999999 9999999999999998854 4566665
No 94
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.41 E-value=1.5e-12 Score=89.55 Aligned_cols=66 Identities=20% Similarity=0.315 Sum_probs=53.8
Q ss_pred EEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcE----E-----EECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY----F-----IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 9 l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~----~-----~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|.|.+.|+|.|.|+|+|||++|... .++ . ...+.|.|.++. .+|+|.|+|.|.|..|....++
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~-------~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~YtC~A~N~~G~~~~~~ 74 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNES-------EYICTKIHVINNTEYHGCLQLDNPT-HLNNGIYTLVAKNEYGEDEKNV 74 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCC-------cceeeeeEeecccceEEEEEECCCC-cccCEEEEEEEEcCCcccceEE
Confidence 6899999999999999999999732 221 1 123589999999 9999999999999999877766
Q ss_pred EEE
Q psy14886 80 QLR 82 (505)
Q Consensus 80 ~l~ 82 (505)
.+.
T Consensus 75 ~~~ 77 (79)
T cd05855 75 SAH 77 (79)
T ss_pred Eee
Confidence 553
No 95
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.41 E-value=3.1e-12 Score=91.98 Aligned_cols=79 Identities=38% Similarity=0.714 Sum_probs=65.7
Q ss_pred ceEEeeCCCeEEEEeec-CCCCCCeEEEEECCEEecC-CCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeee-EE
Q psy14886 97 SETYAGEGGNVTIFCNP-EAAPKPKFVWKKDGNIIGS-GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GR 173 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~-~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~ 173 (505)
....+.+|+++.|.|.+ .+.|.+.+.|+++|..+.. ..+.....++.|.|.++..+|+|.|+|.+.|..|..... +.
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 83 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAAR 83 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEE
Confidence 45678899999999998 7889999999999998875 445555566789999999999999999999999886544 44
Q ss_pred EE
Q psy14886 174 LI 175 (505)
Q Consensus 174 l~ 175 (505)
|.
T Consensus 84 l~ 85 (86)
T cd05724 84 LS 85 (86)
T ss_pred EE
Confidence 43
No 96
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.41 E-value=1.8e-12 Score=92.60 Aligned_cols=76 Identities=26% Similarity=0.410 Sum_probs=61.2
Q ss_pred CceEEEEEEeccCCC--eEEEEECCEECcCCCCCCCCCCcE---E--EECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 5 ADLTWTCEAFGVPDV--TYSWFRNGELLNSETLPLEDQDRY---F--IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 5 ~~~~l~C~~~~~p~~--~~~W~~~~~~l~~~~~~~~~~~~~---~--~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
++++|.|.+.+.|.+ .+.|+|+|.++.... ...++ . ...++|.|.+++ .+|+|.|+|.|.|..|....
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~----~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~g~~~~ 75 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDK----DGGHYRRVGGKDSNGDLMIRNAQ-LKHAGKYTCTAQTVVDSLSA 75 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccC----CCccEEEEecccccceEEEccCC-HHhCeeeEEEEecCCCcEEE
Confidence 578999999998865 679999999886321 11111 1 145789999999 99999999999999999988
Q ss_pred eEEEEEEe
Q psy14886 78 SAQLRVLT 85 (505)
Q Consensus 78 ~~~l~v~~ 85 (505)
++.|.|..
T Consensus 76 ~~~l~V~~ 83 (85)
T cd04970 76 SADLIVRG 83 (85)
T ss_pred EEEEEEEC
Confidence 99999985
No 97
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.41 E-value=6.9e-13 Score=95.41 Aligned_cols=83 Identities=29% Similarity=0.430 Sum_probs=69.8
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC-cEEEEeeecCceeeEEEEcCCccceeeEEEEEEE
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE-FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a 467 (505)
+|.++.+.....+++.|.|+++. ..++.+.+|.|+|+..+... +....... ....+.|.+|.|++.|.|+|+|
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~--~~~~~~~~y~v~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~p~t~Y~~~v~a 75 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPS--SGNGPITGYRVEYRSVNSTSDWQEVTVPG----NETSYTITGLQPGTTYEFRVRA 75 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESS--STSSSESEEEEEEEETTSSSEEEEEEEET----TSSEEEEESCCTTSEEEEEEEE
T ss_pred cCcCeEEEECCCCEEEEEEECCC--CCCCCeeEEEEEEEecccceeeeeeeeee----eeeeeeeccCCCCCEEEEEEEE
Confidence 68899999999999999999943 88899999999999988555 44444333 2237888999999999999999
Q ss_pred ecCCCCCCCC
Q psy14886 468 INDVGPGPES 477 (505)
Q Consensus 468 ~n~~G~g~~s 477 (505)
+|..|.|++|
T Consensus 76 ~~~~g~g~~S 85 (85)
T PF00041_consen 76 VNSDGEGPPS 85 (85)
T ss_dssp EETTEEEEEE
T ss_pred EeCCcCcCCC
Confidence 9999999876
No 98
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.41 E-value=2.4e-12 Score=90.15 Aligned_cols=77 Identities=25% Similarity=0.427 Sum_probs=64.0
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
...+.+|+.+.|.|.+.+. .+.+.|+|+|.++..+.+..+. .+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 3568899999999999886 5689999999998776665553 567999999999999999999999888766665543
No 99
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.41 E-value=1.9e-12 Score=93.55 Aligned_cols=79 Identities=29% Similarity=0.420 Sum_probs=65.4
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe---eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~---~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
...+.+|+.+.|.|.+.|.|.|.+.|+++|..+......... ....|.|.++...|.|.|+|.|.|..|.....+.|
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 355889999999999999999999999999987654332221 22369999999999999999999999998888777
Q ss_pred EE
Q psy14886 175 IV 176 (505)
Q Consensus 175 ~v 176 (505)
.|
T Consensus 89 ~v 90 (90)
T cd04972 89 TV 90 (90)
T ss_pred eC
Confidence 54
No 100
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.41 E-value=2.6e-12 Score=89.12 Aligned_cols=72 Identities=22% Similarity=0.475 Sum_probs=59.2
Q ss_pred CCceEEEEEEeccCCCeEEEEE-CCEECcCCCCCCCCCCcEE-EECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYF-IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~-~~~~l~~~~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
|+++.|.|.+.|.|.+.+.|++ ++..+. ...++. ..+++|.|.++. .+|+|.|+|.|.|..|.....+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~-------~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLIS-------NSSRTLVYDNGTLDILITT-VKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEec-------CCCeEEEecCCEEEEEECC-hhhCEEEEEEEECCCCeEEEEEEE
Confidence 7899999999999999999998 566554 223333 356799999999 999999999999999988777766
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 54
No 101
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.41 E-value=1.5e-12 Score=94.68 Aligned_cols=80 Identities=33% Similarity=0.586 Sum_probs=70.5
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
..+.+.+|+++.|.|.+.+.|.+.+.|+++|..+..+.+..+... .+|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~ 87 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVN 87 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEE
Confidence 557899999999999999999999999999999988777666543 35999999999999999999999998888887
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
|.|
T Consensus 88 l~V 90 (90)
T PF07679_consen 88 LTV 90 (90)
T ss_dssp EEE
T ss_pred EEC
Confidence 765
No 102
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.40 E-value=3.3e-12 Score=91.48 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=64.3
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcE---EE-eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR---KI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~---~~-~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
.+.+|+.+.|.|.+.|.|.+.+.|+++|..+..+.+. .. .....|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 4778999999999999999999999999988754432 11 1234699999999999999999999999988888776
Q ss_pred E
Q psy14886 176 V 176 (505)
Q Consensus 176 v 176 (505)
|
T Consensus 85 v 85 (85)
T cd05857 85 V 85 (85)
T ss_pred C
Confidence 4
No 103
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.40 E-value=1.5e-12 Score=89.71 Aligned_cols=70 Identities=27% Similarity=0.492 Sum_probs=57.3
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
++|.|.+.|.|.+.+.|+|++..+... .......+++|.|.+++ .+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~------~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD------RTKFENFNKTLKIDNVS-EEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC------ceeEecCCCEEEECCCC-HHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 579999999999999999999877521 11222345789999999 99999999999999998877777766
No 104
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.40 E-value=1.7e-12 Score=88.59 Aligned_cols=69 Identities=26% Similarity=0.419 Sum_probs=59.0
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.+.|+|+|..+....+. .....+|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT-KKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE-EcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 469999999999999999999998765433 344678999999999999999999999998877776665
No 105
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.40 E-value=2.7e-12 Score=92.59 Aligned_cols=68 Identities=24% Similarity=0.370 Sum_probs=57.7
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|+.+.|.|.+.|.|.+.|+|+|++..+.. ...++.+.++.|.|.++...+|+|.|+|.|.|..|...+
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~------~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDL------TNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccC------CCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 45899999999999999999999998753 234677788999999984268999999999999998755
No 106
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.40 E-value=1.7e-12 Score=92.55 Aligned_cols=76 Identities=17% Similarity=0.364 Sum_probs=60.4
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
..|++++|.|.+.+.|.+.+.|+|++..+..... ........+|.|.+++ .+|+|.|+|.+.|..|.....+.|
T Consensus 7 ~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~-----~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 7 PVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEI-----GESRKKKWTLSLKNLK-PEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred cCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcc-----ceecCceEEEEEccCC-hhhCEEEEEEEEcCCccEEEEEEE
Confidence 5799999999999999999999999987753211 1111123689999999 999999999999999987777666
Q ss_pred EE
Q psy14886 82 RV 83 (505)
Q Consensus 82 ~v 83 (505)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 54
No 107
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.40 E-value=3.9e-12 Score=88.19 Aligned_cols=71 Identities=30% Similarity=0.447 Sum_probs=60.7
Q ss_pred eEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 106 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 106 ~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
++.|.|.+.|.|.|.+.|+++|..+..+.+..+... ..|.|.++...|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 378999999999999999999999866666555432 36999999999999999999999999888877764
No 108
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.39 E-value=2.4e-12 Score=87.81 Aligned_cols=69 Identities=32% Similarity=0.630 Sum_probs=59.1
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
++|.|.+.|.|.|.+.|++++..+.. .+.....++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999876643 4555556778999999999999999999999999888877764
No 109
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.39 E-value=5.8e-12 Score=90.91 Aligned_cols=68 Identities=31% Similarity=0.571 Sum_probs=55.9
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCC-CCCCEEEEEEEEcCCCceeee
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVS-RDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~-~~d~G~y~C~~~~~~g~~~~~ 171 (505)
|..+.|.|.+.|.|.|+++|++++..+..........++.|.|.++. .+|+|.|+|.|.|..|.....
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~ 87 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSR 87 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEc
Confidence 45799999999999999999999998754333334457889999885 689999999999999987654
No 110
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.39 E-value=4.2e-12 Score=91.74 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=67.0
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEe-eC---CCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF-EN---GNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~-~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
+..+.+.+|+++.|.|.+.+.|.+.+.|++++..+..+.++... .. .+|.|.++..+|+|.|+|.|.|..|.....
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 35577899999999999999999999999999988765554432 12 269999999999999999999999998887
Q ss_pred EEEEE
Q psy14886 172 GRLIV 176 (505)
Q Consensus 172 ~~l~v 176 (505)
+.|.|
T Consensus 88 ~~v~~ 92 (92)
T cd05891 88 VTVSV 92 (92)
T ss_pred EEEEC
Confidence 76653
No 111
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.39 E-value=2.5e-12 Score=92.09 Aligned_cols=79 Identities=27% Similarity=0.443 Sum_probs=64.9
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE-CCEEecCCCcEEEeeCC---CEEEcCCCCCCCEEEEEEEEcCCCcee-ee
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENG---NLLISPVSRDDSGIYSCTATNVHGMDE-SK 171 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~-~g~~~~~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~~~~~~g~~~-~~ 171 (505)
.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+..+.++.+..++ .|.|.++..+|+|.|+|.|.|..|... ++
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 86 (92)
T cd05866 8 SKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 86 (92)
T ss_pred cceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEE
Confidence 3456889999999999999987 999998 57777666677666555 699999999999999999999998864 44
Q ss_pred EEEEE
Q psy14886 172 GRLIV 176 (505)
Q Consensus 172 ~~l~v 176 (505)
+.|.+
T Consensus 87 i~l~~ 91 (92)
T cd05866 87 VVLEI 91 (92)
T ss_pred EEEEE
Confidence 55554
No 112
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.39 E-value=8.5e-12 Score=93.17 Aligned_cols=94 Identities=26% Similarity=0.453 Sum_probs=70.4
Q ss_pred CCCccCCCCCceEEe--eCCCeEEEEeecCCCCCCeEEEEECCEEecCC-CcEEEe--e-----CCCEEEcCCC-CCCCE
Q psy14886 87 KPSFKKRPLESETYA--GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-GRRKIF--E-----NGNLLISPVS-RDDSG 155 (505)
Q Consensus 87 ~p~~~~~~~~~~~~v--~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-~~~~~~--~-----~~~l~i~~v~-~~d~G 155 (505)
+|.+...+....+.. ..|..++|.|.+.|.|.+.+.|+++|..+... .++... . .+.|.|.++. .+|.|
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G 83 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYA 83 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCE
Confidence 566655543212211 35689999999999999999999999988642 333221 1 2469999997 58999
Q ss_pred EEEEEEEcCCCceeeeEEEEEEeCC
Q psy14886 156 IYSCTATNVHGMDESKGRLIVLHGP 180 (505)
Q Consensus 156 ~y~C~~~~~~g~~~~~~~l~v~~~p 180 (505)
.|+|.|.|..|.....+.|.+...|
T Consensus 84 ~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 84 LFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEeCCccCcEEEEEEecCCC
Confidence 9999999999999999999887655
No 113
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.39 E-value=3.3e-12 Score=91.79 Aligned_cols=75 Identities=31% Similarity=0.471 Sum_probs=60.8
Q ss_pred CCCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-
Q psy14886 1 MDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS- 77 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~- 77 (505)
+.+|+++.|.|.+ .+.|.+.+.|+|++..+... ..++.. .+++|.|.+++ .+|+|.|+|.+.|..|...+
T Consensus 8 ~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~------~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 8 VAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD------NERVRIVDDGNLLIAEAR-KSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred EeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC------CCCEEEccCCEEEEeECC-cccCEEEEEEEEeccCceeee
Confidence 4689999999998 68899999999999988742 334443 45799999999 99999999999999887654
Q ss_pred eEEEE
Q psy14886 78 SAQLR 82 (505)
Q Consensus 78 ~~~l~ 82 (505)
.+.|.
T Consensus 81 ~~~l~ 85 (86)
T cd05724 81 AARLS 85 (86)
T ss_pred eEEEE
Confidence 34443
No 114
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.39 E-value=2.6e-12 Score=88.78 Aligned_cols=70 Identities=34% Similarity=0.601 Sum_probs=59.0
Q ss_pred EEEEeecCCCCCCeEEEEECCEEec--CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce-eeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD-ESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~--~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~-~~~~~l~v 176 (505)
++|.|.+.|.|.|.+.|++++..+. ...++....++.|.|.++..+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999999886 4456666667789999999999999999999999985 34466655
No 115
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.39 E-value=3e-12 Score=89.47 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=54.1
Q ss_pred EEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEE-------EECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEE
Q psy14886 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYF-------IQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQL 81 (505)
Q Consensus 9 l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 81 (505)
|.|.+.|.|.|.|+|+|||++|..... ....+. ...+.|.|.+++ .+|+|.|+|.|.|..|....++.+
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~---~~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~YtC~A~N~~G~~~~~~~~ 78 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDY---IRTEIHYEVTTPTEYHGCLQFDNPT-HVNNGNYTLVASNEYGQDSKSISA 78 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCc---eeEEEEeecccccccEEEEEECCCC-cccCeEEEEEEEeCCCCeeeEEEe
Confidence 689999999999999999999974311 000111 113479999999 999999999999999998777665
Q ss_pred E
Q psy14886 82 R 82 (505)
Q Consensus 82 ~ 82 (505)
.
T Consensus 79 ~ 79 (81)
T cd04971 79 H 79 (81)
T ss_pred e
Confidence 4
No 116
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.39 E-value=4.7e-12 Score=99.91 Aligned_cols=114 Identities=18% Similarity=0.309 Sum_probs=81.3
Q ss_pred CeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-CC-CeEEEEE
Q psy14886 48 NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PK-PKFVWKK 125 (505)
Q Consensus 48 ~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p~-~~i~W~~ 125 (505)
.+|.|.+++ .+|+|.|+|.+.+..+.....+.|.|.. +|.+.+.+. .....+|+.+.|.|.+.|. |. ++|.|++
T Consensus 1 asL~i~~v~-~~D~G~Y~C~~~~~~~~~~~~~~l~v~~-~P~v~~~~~--~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~ 76 (139)
T cd05771 1 ASLTLPGLT-VHDEGTYICSVSTPPHQAQQIIQLSVSE-PPRVRLSLE--KLVSMIEEPQTLICHIAGYYPLDVQVEWTR 76 (139)
T ss_pred CeEEECCCC-HHHCEEEEEEEEccCcceeeEEEEEEec-CCceEEeCC--CceeecCCcEEEEEEECCCCCCCeEEEEEE
Confidence 379999999 9999999999998878877888999985 777665542 2334478899999999986 54 4899999
Q ss_pred CCEEecC-----CC----cEEEeeCCC------EEEcCCCCCCCEEEEEEEEcCC
Q psy14886 126 DGNIIGS-----GG----RRKIFENGN------LLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 126 ~g~~~~~-----~~----~~~~~~~~~------l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
+|..... .. ......+++ |.+......+.+.|+|.+.+..
T Consensus 77 ~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 77 EPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 8754211 11 111223333 5555555556779999998653
No 117
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.39 E-value=1.2e-12 Score=95.05 Aligned_cols=75 Identities=33% Similarity=0.585 Sum_probs=64.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|++++|.|.+.+.|.+.+.|++++.++.. ..++.+ ...+|.|.+++ .+|+|.|+|.+.|..|...
T Consensus 12 v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~-------~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~n~~g~~~ 83 (90)
T PF07679_consen 12 VKEGESVTLECEVSGNPPPTVTWYKNGRPLTS-------SQRYQIESDGGSSSLTIKNVT-REDAGTYTCVASNSSGEAT 83 (90)
T ss_dssp EETTSEEEEEEEEEESSSSEEEEEETTEEEES-------SSSEEEEEETTEEEEEESSES-GGGSEEEEEEEEETTEEEE
T ss_pred EeCCCEEEEEEEEEeCCCCcccccccccceee-------eeeeeeecccceeEEccCCCC-hhhCEEEEEEEEECCCEEE
Confidence 46899999999999999999999999999984 344444 24689999999 9999999999999988888
Q ss_pred eeEEEEE
Q psy14886 77 SSAQLRV 83 (505)
Q Consensus 77 ~~~~l~v 83 (505)
..+.|.|
T Consensus 84 ~~~~l~V 90 (90)
T PF07679_consen 84 ASVNLTV 90 (90)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 8877765
No 118
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=2.9e-12 Score=89.03 Aligned_cols=72 Identities=25% Similarity=0.440 Sum_probs=57.7
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
++|.|.+.|.|.|.++|+|++...... ....++.. .++.|.|.+++ .+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~----~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPA----ARERRMHVMPEDDVFFIVDVK-IEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCc----ccccceEEecCCCEEEEeeCC-cccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 479999999999999999998643211 12334443 35689999999 99999999999999999888888877
No 119
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.39 E-value=2.9e-12 Score=92.34 Aligned_cols=80 Identities=23% Similarity=0.397 Sum_probs=58.4
Q ss_pred CCceEEEEEEeccCCCeEEEEECC----EECcCCCCCC------CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNG----ELLNSETLPL------EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~----~~l~~~~~~~------~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|+.++|.|.+.|.|.|.|+|+|++ ..+.....+. .....+......|.|.+++ .+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVS-FDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccc-cccCcEEEEEeecccC
Confidence 789999999999999999999964 2222110000 0000011123579999999 9999999999999999
Q ss_pred ceEeeEEEEEE
Q psy14886 74 TRYSSAQLRVL 84 (505)
Q Consensus 74 ~~~~~~~l~v~ 84 (505)
....++.|.|.
T Consensus 80 ~~~~sa~L~V~ 90 (90)
T cd04974 80 PSHHSAWLTVL 90 (90)
T ss_pred cccCCEEEEeC
Confidence 99888888873
No 120
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.38 E-value=2.6e-12 Score=91.75 Aligned_cols=76 Identities=28% Similarity=0.447 Sum_probs=61.8
Q ss_pred CeEEEEeecCCCCCC--eEEEEECCEEecCCC---cE----EEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 105 GNVTIFCNPEAAPKP--KFVWKKDGNIIGSGG---RR----KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 105 ~~v~l~C~~~~~p~~--~i~W~~~g~~~~~~~---~~----~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
+++.|.|.+.+.|.+ .+.|+++|..+.... .+ .....+.|.|.+++..|+|.|+|.|.|..|.....+.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999877 679999999876322 11 112356799999999999999999999999999999999
Q ss_pred EEeCC
Q psy14886 176 VLHGP 180 (505)
Q Consensus 176 v~~~p 180 (505)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 97654
No 121
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.38 E-value=6.6e-12 Score=93.43 Aligned_cols=87 Identities=29% Similarity=0.585 Sum_probs=63.7
Q ss_pred CCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecC-----CCcEEEeeCCCEEEc-----CCCCCCCEEE
Q psy14886 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-----GGRRKIFENGNLLIS-----PVSRDDSGIY 157 (505)
Q Consensus 88 p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~-----~~~~~~~~~~~l~i~-----~v~~~d~G~y 157 (505)
|.+...+ ....+.+|+++.|.|.+.|.|.|.+.|+++|..+.. ..+.....++.+.+. .+..+|+|.|
T Consensus 2 P~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 2 PRIVEHP--SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CeEEecC--ceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 4454444 457789999999999999999999999999998865 122233334443322 2368999999
Q ss_pred EEEEEcCCCc-eeeeEEEEE
Q psy14886 158 SCTATNVHGM-DESKGRLIV 176 (505)
Q Consensus 158 ~C~~~~~~g~-~~~~~~l~v 176 (505)
+|.|.|..|. ....+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999998 445566665
No 122
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.38 E-value=2.1e-12 Score=87.22 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=56.7
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.+.|+|+|.++....+ ......|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE--EccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 46899999999999999999999875433 333557999999999999999999999997777655544
No 123
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.38 E-value=4.6e-12 Score=93.14 Aligned_cols=80 Identities=25% Similarity=0.359 Sum_probs=62.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
+.+|++++|.|.+.|.|.+.+.|++++..+..... ...+++.+. .++|.|.+++ .+|+|.|+|.|.|..|...
T Consensus 13 ~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 13 AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDK--SLDGRIVVRGHARVSSLTLKDVQ-LTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred EecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCc--cccceEEEeCCccEEEEEECcCC-cCcCEEeEEEEEeCCCCcE
Confidence 35899999999999999999999999866542210 112344432 2589999999 9999999999999999987
Q ss_pred eeEEEEE
Q psy14886 77 SSAQLRV 83 (505)
Q Consensus 77 ~~~~l~v 83 (505)
.++.|.|
T Consensus 90 ~s~~l~v 96 (96)
T cd05732 90 QSMYLEV 96 (96)
T ss_pred EEEEEeC
Confidence 7777654
No 124
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.37 E-value=4.3e-12 Score=93.05 Aligned_cols=78 Identities=27% Similarity=0.442 Sum_probs=62.6
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-----CcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-----~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
..+..|+.++|.|.+.|.|.|.++|++++..+... .++..... +.|.|.++..+|+|.|+|.|.|..|....
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 91 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQ 91 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeE
Confidence 34556899999999999999999999988776432 22222222 36999999999999999999999999988
Q ss_pred eEEEEE
Q psy14886 171 KGRLIV 176 (505)
Q Consensus 171 ~~~l~v 176 (505)
.+.|.|
T Consensus 92 ~~~l~v 97 (97)
T cd05869 92 SMYLEV 97 (97)
T ss_pred EEEEEC
Confidence 887764
No 125
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.37 E-value=4.2e-12 Score=85.90 Aligned_cols=68 Identities=26% Similarity=0.511 Sum_probs=55.6
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
|++++|.|.+.|.|.|.|.|++++..+....+... ....|.|.++ .|+|.|+|.|.|..|.....+.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-GRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999998765443322 2346888887 47999999999999988877665
No 126
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.37 E-value=3.5e-12 Score=89.25 Aligned_cols=73 Identities=29% Similarity=0.490 Sum_probs=61.4
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
|+++.|.|.+.|.|.|.+.|++++..+....++.+... +.|.|.++..+|.|.|+|.|.|..|.....+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 68899999999999999999999988876555554433 46999999999999999999999998877765544
No 127
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.37 E-value=6.2e-12 Score=93.91 Aligned_cols=77 Identities=31% Similarity=0.514 Sum_probs=62.9
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--------ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--------QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
.|+.++|.|.+.|.|.+.+.|+|||..+... ..++.. ..+.|.|.+++..+|.|.|+|.|.|..|.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~------~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~ 95 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLG------NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE 95 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCC------CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc
Confidence 4678999999999999999999999988632 123321 13679999987248999999999999999
Q ss_pred eEeeEEEEEEe
Q psy14886 75 RYSSAQLRVLT 85 (505)
Q Consensus 75 ~~~~~~l~v~~ 85 (505)
....+.|.|..
T Consensus 96 ~~~~i~L~~~~ 106 (109)
T cd05773 96 DSLDIQLVSTS 106 (109)
T ss_pred CcEEEEEEecC
Confidence 98888888875
No 128
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.36 E-value=4.6e-12 Score=91.46 Aligned_cols=79 Identities=22% Similarity=0.399 Sum_probs=57.8
Q ss_pred CCceEEEEEEeccCCCeEEEEEC----CEECcCCCCCCC---CCCcEEE---ECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRN----GELLNSETLPLE---DQDRYFI---QDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~----~~~l~~~~~~~~---~~~~~~~---~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
|++++|.|.+.|.|.|.|+|+|+ +..+.....+.. ....... ..++|.|.+++ .+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVT-FEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCC-HHHCEEEEEEEEeCCC
Confidence 78999999999999999999994 444432111000 0000000 12579999999 9999999999999999
Q ss_pred ceEeeEEEEE
Q psy14886 74 TRYSSAQLRV 83 (505)
Q Consensus 74 ~~~~~~~l~v 83 (505)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9888888877
No 129
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.36 E-value=7.8e-12 Score=91.88 Aligned_cols=80 Identities=30% Similarity=0.532 Sum_probs=63.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE--CCEEecC-----CCcEEEee---CCCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK--DGNIIGS-----GGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~--~g~~~~~-----~~~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
.+..+.+|++++|.|.+.|.|.|.+.|++ ++..+.. +.++.+.. ...|.|.+++.+|+|.|+|.|.|..|
T Consensus 9 ~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 88 (98)
T cd05870 9 KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG 88 (98)
T ss_pred ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence 34678899999999999999999999999 4444421 23444432 24699999999999999999999999
Q ss_pred ceeeeEEEEE
Q psy14886 167 MDESKGRLIV 176 (505)
Q Consensus 167 ~~~~~~~l~v 176 (505)
.....+.|.|
T Consensus 89 ~~~~~~~l~~ 98 (98)
T cd05870 89 GHQKSMYLDI 98 (98)
T ss_pred cceeEEEEeC
Confidence 9888777654
No 130
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.35 E-value=3.8e-12 Score=87.65 Aligned_cols=70 Identities=30% Similarity=0.442 Sum_probs=57.7
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
+.|.|.+.|.|.|.+.|++++..+...........+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4799999999999999999988775432222233457999999999999999999999999888887766
No 131
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.35 E-value=1.2e-11 Score=89.80 Aligned_cols=69 Identities=35% Similarity=0.592 Sum_probs=57.0
Q ss_pred CCCeEEEEeecCCCCCCeEEEEECCEEecCCCc-EEEeeCCCEEEcCCC-CCCCEEEEEEEEcCCCceeee
Q psy14886 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGR-RKIFENGNLLISPVS-RDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~-~~~~~~~~l~i~~v~-~~d~G~y~C~~~~~~g~~~~~ 171 (505)
+|+.+.|.|.+.|.|.|+++|+++|..+..... .....++.|.|.++. ..|.|.|+|.|.|..|...+.
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~ 88 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSR 88 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEec
Confidence 578999999999999999999999998864332 223356789999875 699999999999999987554
No 132
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.34 E-value=5.8e-12 Score=87.74 Aligned_cols=65 Identities=25% Similarity=0.463 Sum_probs=53.4
Q ss_pred CCCCCceEEEEEEeccCCC-eEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~-~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|.+|+++.|.|.+.|.|.+ +|.|+|||.++.. +.....+.|.|..+. |.|.|.|.|.|..|...+
T Consensus 10 v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~---------~~~~~~s~L~i~~~~---d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 10 VTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD---------PPAPSPSVLNVPGLN---ETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred EcCCCCEEEEEEeeeecCCeEEEEEECCEECCC---------CCCCCCCEEEEcccc---CCeEEEEEEEeccCcEEe
Confidence 4689999999999999998 7999999998863 112235688888765 789999999999997665
No 133
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.34 E-value=5.5e-12 Score=86.75 Aligned_cols=68 Identities=25% Similarity=0.358 Sum_probs=55.7
Q ss_pred EEEeecCCCCCCeEEEEECCEEecCCCcEEE--e------eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 108 TIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--F------ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 108 ~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~--~------~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
.|.|.+.|.|.|+|+|+|+|..+..+.+... . ..+.|.|.++...|+|.|+|.|.|..|....++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 4789999999999999999999976554321 1 123699999999999999999999999888776553
No 134
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.34 E-value=2.5e-11 Score=88.08 Aligned_cols=68 Identities=32% Similarity=0.527 Sum_probs=55.3
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCC-cEEEeeCCCEEEcCCC-CCCCEEEEEEEEcCCCceeee
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG-RRKIFENGNLLISPVS-RDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~-~~~~~~~~~l~i~~v~-~~d~G~y~C~~~~~~g~~~~~ 171 (505)
|+++.|.|.+.|.|.+.++|+++|..+.... ......++.|.|.++. ..|.|.|+|.|.|..|...+.
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~ 88 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSR 88 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEE
Confidence 4689999999999999999999999886322 2223346789998865 599999999999999987664
No 135
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.33 E-value=7.5e-12 Score=84.53 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=52.5
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
+.|.|.+.|.|.|++.|+|+|.++..........+.+|.|.++..+|+|.|+|.|.+.........
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~ 66 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNL 66 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeE
Confidence 468999999999999999999988754332233445899999999999999999999755544443
No 136
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.33 E-value=8.9e-12 Score=88.39 Aligned_cols=77 Identities=19% Similarity=0.316 Sum_probs=57.9
Q ss_pred CCceEEEEEEeccCCCeEEEEECCE---ECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGE---LLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~---~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|++++|.|.+.|.|.+.+.|+|++. .+... +.....++.. ..++|.|.+++ .+|+|.|+|.+.|..|.....+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~--~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~ 77 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMR--PNHVRGNVVVTNIGQLVIYNAQ-PQDAGLYTCTARNSGGLLRANF 77 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeec--CCcccCCEEEccccEEEEccCC-cccCEEEEEEEecCCceEEEEE
Confidence 7899999999999999999999742 11100 0001122322 44789999999 9999999999999999988887
Q ss_pred EEEE
Q psy14886 80 QLRV 83 (505)
Q Consensus 80 ~l~v 83 (505)
.|.|
T Consensus 78 ~l~v 81 (81)
T cd05765 78 PLSV 81 (81)
T ss_pred EEeC
Confidence 7764
No 137
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.33 E-value=1.7e-11 Score=89.58 Aligned_cols=79 Identities=42% Similarity=0.710 Sum_probs=62.7
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCC--cEEEeeCCCEEEcCC-----CCCCCEEEEEEEEcC-CCce
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENGNLLISPV-----SRDDSGIYSCTATNV-HGMD 168 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~~~~~~l~i~~v-----~~~d~G~y~C~~~~~-~g~~ 168 (505)
....+.+|+++.|.|.+.+.|.+.+.|+|+|..+.... +.....++.|.|.++ ...|.|.|+|.|.|. .|..
T Consensus 7 ~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 7 SDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred CCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 34567889999999999999999999999999886533 244555677777776 578999999999999 8887
Q ss_pred ee-eEEEE
Q psy14886 169 ES-KGRLI 175 (505)
Q Consensus 169 ~~-~~~l~ 175 (505)
.+ .+.|.
T Consensus 87 ~s~~~~l~ 94 (95)
T cd05722 87 VSRTARLT 94 (95)
T ss_pred EEeeeEEe
Confidence 44 35554
No 138
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.33 E-value=1.3e-11 Score=91.92 Aligned_cols=81 Identities=26% Similarity=0.419 Sum_probs=57.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEE-----cCCCCCCCeEEEEEEEcccCc-
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIR-----YLNPERDPAMYQCRAKNQLKT- 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~-----~~~~~~d~G~Y~C~~~~~~~~- 74 (505)
+.+|++++|.|.+.|.|.+.+.|+|+|..+...... ....+....++.+.+. .++ .+|+|.|+|.|.|..|.
T Consensus 13 v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~-~~D~G~Y~C~a~N~~G~~ 90 (100)
T cd07693 13 VSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDD-PRSHRIVLPSGSLFFLRVVHGRKG-RSDEGVYVCVAHNSLGEA 90 (100)
T ss_pred EcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCC-CCcceEEecCCcEEEEEeeccCCC-cCcCEEEEEEEEccccce
Confidence 468999999999999999999999999988742110 0112233334443332 236 89999999999999998
Q ss_pred eEeeEEEEE
Q psy14886 75 RYSSAQLRV 83 (505)
Q Consensus 75 ~~~~~~l~v 83 (505)
....+.|.|
T Consensus 91 ~s~~~~l~v 99 (100)
T cd07693 91 VSRNASLEV 99 (100)
T ss_pred ecceEEEEe
Confidence 444666665
No 139
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.32 E-value=1.2e-11 Score=89.19 Aligned_cols=78 Identities=26% Similarity=0.352 Sum_probs=63.0
Q ss_pred eEEeeCCCeEEEEeecCC-----CCCCeEEEEECCEEecC----CCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 98 ETYAGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~-----~p~~~i~W~~~g~~~~~----~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
...+.+|+.+.|.|.+.+ .|.+.|.|+|++..+.. ..+. ...++.|.|.++..+|+|.|+|.+.|..|..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~-~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRM-HQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCccccccccee-eecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 456789999999999998 68889999999876432 1222 2235689999999999999999999999998
Q ss_pred eeeEEEEE
Q psy14886 169 ESKGRLIV 176 (505)
Q Consensus 169 ~~~~~l~v 176 (505)
...+.|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 88877764
No 140
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.32 E-value=1.4e-11 Score=90.60 Aligned_cols=75 Identities=23% Similarity=0.288 Sum_probs=60.1
Q ss_pred CCCCCceEEEEEEeccCCC-eEEEEECCEECcCCCCCCCCCCcEEEEC--------CeEEEEcCCCC-CCCeEEEEEEEc
Q psy14886 1 MDNQADLTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQD--------NVLTIRYLNPE-RDPAMYQCRAKN 70 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~-~~~W~~~~~~l~~~~~~~~~~~~~~~~~--------~~L~i~~~~~~-~d~G~Y~C~~~~ 70 (505)
+.+|+.++|.|.+.|.|.+ .|.|++++..+... ...++.+.. ++|.|.+++ . +|.|.|+|.|.|
T Consensus 13 ~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~-----~~~r~~i~~~~~~~~~~s~L~I~~v~-~~d~~G~Y~C~A~N 86 (98)
T cd05758 13 AILGDKGRVECFIFSTPPPDRIVWTWKENELESG-----SSGRYTVETDPSPGGVLSTLTISNTQ-ESDFQTSYNCTAWN 86 (98)
T ss_pred EeCCCcEEEEEEEcccCCCCEeEEEECCEEccCC-----CCCCEEEEEecCCCceEEEEEECCcc-ccccceeEEEEEEc
Confidence 3579999999999999988 69999999988642 224555431 479999999 7 559999999999
Q ss_pred ccCceEeeEEE
Q psy14886 71 QLKTRYSSAQL 81 (505)
Q Consensus 71 ~~~~~~~~~~l 81 (505)
..|.....+.|
T Consensus 87 ~~G~~~~~~~L 97 (98)
T cd05758 87 SFGSGTAIISL 97 (98)
T ss_pred CCCcccEEEEe
Confidence 99987766654
No 141
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.32 E-value=2.3e-11 Score=84.82 Aligned_cols=72 Identities=24% Similarity=0.390 Sum_probs=59.6
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 84 (505)
+.|.|.+.|.|.+.+.|+|++..+... ...++.. .+..|.|.+++ .+|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~-----~~~~~~~~~~~~~l~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPK-----LSKQLTLIANGSELHISNVR-YEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCC-----CCccEEEeCCCCEEEECcCC-cccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 479999999999999999999988632 1234443 23579999999 999999999999999998888888775
No 142
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.32 E-value=1.6e-11 Score=89.73 Aligned_cols=76 Identities=30% Similarity=0.490 Sum_probs=59.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCC-cEEEECCeEEEEcC-----CCCCCCeEEEEEEEcc-cC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQD-RYFIQDNVLTIRYL-----NPERDPAMYQCRAKNQ-LK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~-~~~~~~~~L~i~~~-----~~~~d~G~Y~C~~~~~-~~ 73 (505)
+.+|++++|.|.+.|.|.+.+.|+|+|..+... ... .....+++|.|.++ + .+|.|.|+|.|.|. .|
T Consensus 11 ~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~-----~~~~~~~~~~~~l~i~~v~~~~~~-~~D~G~Y~C~a~N~~~G 84 (95)
T cd05722 11 AVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLV-----SDERRQQLPNGSLLITSVVHSKHN-KPDEGFYQCVAQNDSLG 84 (95)
T ss_pred EcCCCCEEEeeecccCCCCEEEEEECCeECccc-----cCcceEEccCCeEEEeeeeccCCC-CCcCEEEEEEEECCccC
Confidence 357999999999999999999999999988632 112 22335677888776 5 78999999999999 88
Q ss_pred ceEe-eEEEE
Q psy14886 74 TRYS-SAQLR 82 (505)
Q Consensus 74 ~~~~-~~~l~ 82 (505)
...+ .+.|.
T Consensus 85 ~~~s~~~~l~ 94 (95)
T cd05722 85 SIVSRTARLT 94 (95)
T ss_pred cEEEeeeEEe
Confidence 7644 45554
No 143
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.32 E-value=1.5e-11 Score=85.56 Aligned_cols=70 Identities=30% Similarity=0.585 Sum_probs=56.0
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCC-cEEEe-eCCCEEEcCCCCCCCEEEEEEEEcCCCceeee--EEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGG-RRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESK--GRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~-~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~--~~l~v 176 (505)
++|.|.+.|.|.|.+.|+|+|.++.... ++.+. ..+.|.|.++..+|+|.|.|.|.|..|..... +.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5799999999999999999999886543 23332 23579999999999999999999999987544 45544
No 144
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.31 E-value=1.4e-11 Score=86.15 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=55.7
Q ss_pred EEEeecCCCCCCeEEEEECCEEecCCCcEEEe----------eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 108 TIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 108 ~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~----------~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
.|.|.+.|.|.|+++|+|+|+.+..+...... ..+.|.|.++...|+|.|+|.|.|..|.....+.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 37899999999999999999999765533211 123599999999999999999999999988876654
No 145
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.31 E-value=1.5e-11 Score=85.63 Aligned_cols=70 Identities=19% Similarity=0.455 Sum_probs=56.9
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
.+..+.+|+++.|.|.+.|.|.| +|.|+++|.++... . ....+.|.|..+ .|.|.|.|.|.|..|...+.
T Consensus 6 ~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~-~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~ 76 (81)
T cd05749 6 EDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P-APSPSVLNVPGL--NETSKFSCEAHNAKGVTTSR 76 (81)
T ss_pred CceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C-CCCCCEEEEccc--cCCeEEEEEEEeccCcEEee
Confidence 45778999999999999999999 79999999988641 1 123456888886 47899999999999977653
No 146
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.31 E-value=2.4e-11 Score=89.30 Aligned_cols=79 Identities=29% Similarity=0.479 Sum_probs=63.6
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC-----CcEEEee---CCCEEEcCCCCCCCEEEEEEEEcCCCcee
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-----GRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDE 169 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~-----~~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~~~g~~~ 169 (505)
+..+.+|+++.|.|.+.|.|.+.+.|++++..+... .++.+.. ...|.|.++..+|+|.|+|.|.|..|...
T Consensus 10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 356889999999999999999999999988665432 2233322 23699999999999999999999999988
Q ss_pred eeEEEEE
Q psy14886 170 SKGRLIV 176 (505)
Q Consensus 170 ~~~~l~v 176 (505)
..+.|.|
T Consensus 90 ~s~~l~v 96 (96)
T cd05732 90 QSMYLEV 96 (96)
T ss_pred EEEEEeC
Confidence 8777654
No 147
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.31 E-value=2.1e-11 Score=85.56 Aligned_cols=63 Identities=19% Similarity=0.369 Sum_probs=54.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 71 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~ 71 (505)
|.+|+++.|.|.+.+ +.+.+.|+|||.++.. ...++.+.++.|.|.+++ .+|+|.|+|.+.+.
T Consensus 8 v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~------~~~r~~~~~~~L~I~nv~-~~DsG~Y~C~a~e~ 70 (87)
T cd05873 8 FKLGNNAELKCSPKS-NLARVVWKFDGKVLTP------ESAKYLLYRDGLLIFNAS-EADAGRYQCLSVEK 70 (87)
T ss_pred EECCCCEEEEEECCC-CCCeEEEEECCEECCC------CCceEEEECCcEEEeCCC-HHHCEEEEEEEEec
Confidence 468999999999864 6789999999999974 235777888899999999 99999999999864
No 148
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.30 E-value=2.3e-11 Score=84.66 Aligned_cols=66 Identities=38% Similarity=0.600 Sum_probs=52.6
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCC---CCCCeEEEEEEEcccCceEe
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNP---ERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~---~~d~G~Y~C~~~~~~~~~~~ 77 (505)
++|.|.+.|.|.+.|+|+|++.++... ...++.. .+++|.|.+++. .+|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~-----~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPE-----KDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCC-----CCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 589999999999999999999988632 2234443 468999999861 37999999999999987654
No 149
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.30 E-value=1.7e-11 Score=85.10 Aligned_cols=70 Identities=31% Similarity=0.595 Sum_probs=56.6
Q ss_pred EEEEeecCCCCCCeEEEEECCEEec---CCCcEEEe-eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIG---SGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~---~~~~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
++|.|.+.|.|.|.++|+++|.... ...++... .++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4799999999999999999886422 22233333 3457999999999999999999999999888888876
No 150
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.30 E-value=1.9e-11 Score=88.12 Aligned_cols=73 Identities=30% Similarity=0.516 Sum_probs=57.2
Q ss_pred CCeEEEEeecCCCCCCeEEEEECC----EEecCCCc--EEEe----------eCCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDG----NIIGSGGR--RKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g----~~~~~~~~--~~~~----------~~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
|+.++|.|.+.|.|.|.|+|+|++ ..+..... .... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999953 33322111 1111 1236999999999999999999999999
Q ss_pred eeeeEEEEE
Q psy14886 168 DESKGRLIV 176 (505)
Q Consensus 168 ~~~~~~l~v 176 (505)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 999888887
No 151
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.29 E-value=4.3e-11 Score=86.62 Aligned_cols=70 Identities=31% Similarity=0.570 Sum_probs=57.4
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
.|+.+.|.|.+.|.|.+.++|+|++..+... ...++...++.|.|.++...+|+|.|+|.|.|..|...+
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~-----~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDE-----PDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCC-----CCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 3567999999999999999999999988522 234566778899999887248999999999999987655
No 152
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.29 E-value=4e-11 Score=83.21 Aligned_cols=66 Identities=29% Similarity=0.564 Sum_probs=52.0
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCC----CCeEEEEEEEcccCceEee
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPER----DPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~----d~G~Y~C~~~~~~~~~~~~ 78 (505)
+.|.|.+.|.|.++|+|+|++.++... ...++.. .+++|.|..+. .+ |+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~-----~~~~~~~~~~~g~l~i~~~~-~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDID-----KDPKVTMKPNTGTLVINIMN-GEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCc-----CCCCEEEeCCCceEEEeccc-cCCCCCCCEEEEEEEEcCCCeEEee
Confidence 579999999999999999999987532 2233443 46889998887 53 7899999999999886653
No 153
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.29 E-value=2.3e-11 Score=85.46 Aligned_cols=75 Identities=24% Similarity=0.332 Sum_probs=54.1
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCC-CCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-eEEEE
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETL-PLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLR 82 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~-~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~ 82 (505)
++|.|.+.|.|.+.+.|+|++........ .....+++.. .+++|.|.+++ .+|+|.|+|.|.|..|...+ .+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVL-EEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCC-cccCEEEEEEEEeCCCCCCceEEEEe
Confidence 58999999999999999996442211100 0012345554 56899999999 99999999999999887643 44444
No 154
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.28 E-value=1.7e-11 Score=87.29 Aligned_cols=77 Identities=22% Similarity=0.386 Sum_probs=61.9
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEE-eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~-~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
....|+++.|.|.+.+.|.+.+.|++++..+........ .....|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 456799999999999999999999999987754332222 12246999999999999999999999998877766653
No 155
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.28 E-value=1.2e-11 Score=86.31 Aligned_cols=69 Identities=28% Similarity=0.508 Sum_probs=53.9
Q ss_pred eEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 7 LTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 7 ~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
++|.|.+.| .|.+.+.|+|+++++..... ...+.+ ..++|.|.+++ .+|+|.|+|.|.|..|.....+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~----~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNK----PRNIKIRNKKKNSELQINKAK-LADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCC----cceEEEEecCceEEEEEccCC-cccCeEEEEEEEEcCCceeEEEe
Confidence 579999999 89999999999998874311 011111 24689999999 99999999999999988766553
No 156
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.28 E-value=2.1e-11 Score=86.76 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=59.1
Q ss_pred CCceEEEEEEecc--CCCeEEEEECCEECcCCCCCC--CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 4 QADLTWTCEAFGV--PDVTYSWFRNGELLNSETLPL--EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 4 G~~~~l~C~~~~~--p~~~~~W~~~~~~l~~~~~~~--~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
|+.++|.|.+.+. |.+.+.|.+++..+....... ..........++|.|.+++ .+|+|.|+|.|.|..+....++
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~-~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNAT-LKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCC-hhhCEEEEEEEccCCCceEEEE
Confidence 8899999999998 789999999887654221100 0000111234689999999 9999999999999998888888
Q ss_pred EEEE
Q psy14886 80 QLRV 83 (505)
Q Consensus 80 ~l~v 83 (505)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 7766
No 157
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.28 E-value=2.8e-11 Score=87.44 Aligned_cols=78 Identities=26% Similarity=0.463 Sum_probs=59.7
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEE-CCEEecCCCcEEEeeCC----CEEEcCCCCCCCEEEEEEEEcCCCc-eee
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGM-DES 170 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~-~g~~~~~~~~~~~~~~~----~l~i~~v~~~d~G~y~C~~~~~~g~-~~~ 170 (505)
....+..|+++.|.|.+.|.|. .+.|++ ++..+....+.....++ +|.|.++..+|+|.|+|.|.|..|. ...
T Consensus 8 ~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~ 86 (92)
T cd04977 8 SQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEA 86 (92)
T ss_pred CcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCccee
Confidence 3466889999999999999874 999998 67666554444443332 6999999999999999999998654 454
Q ss_pred eEEEE
Q psy14886 171 KGRLI 175 (505)
Q Consensus 171 ~~~l~ 175 (505)
++.|.
T Consensus 87 sv~l~ 91 (92)
T cd04977 87 TVNLK 91 (92)
T ss_pred EEEEE
Confidence 55554
No 158
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.28 E-value=2.9e-11 Score=87.37 Aligned_cols=73 Identities=30% Similarity=0.544 Sum_probs=54.5
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE-CCEECcCCCCCCCCCCcEEE-EC----CeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFI-QD----NVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~-~~~~l~~~~~~~~~~~~~~~-~~----~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
+.+|+++.|.|.+.|.|. .+.|++ ++..+.. ..++.. .+ ++|.|.+++ .+|+|.|+|.|.|..|.
T Consensus 12 v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~-------~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 12 ISVGESKFFLCQVIGEPK-DISWFSPNGEKLVT-------QQQISVVQNDDVRSTLTIYNAN-IEDAGIYKCVATDAKGT 82 (92)
T ss_pred ECCCCeEEEEEEeEeeCC-eEEEECCCCCEecc-------CCCEEEEeCCCCEEEEEEecCC-cccCEEEEEEEEcCCCC
Confidence 468999999999999875 999998 5655542 223322 22 489999999 99999999999998654
Q ss_pred -eEeeEEEE
Q psy14886 75 -RYSSAQLR 82 (505)
Q Consensus 75 -~~~~~~l~ 82 (505)
...++.|.
T Consensus 83 ~~~~sv~l~ 91 (92)
T cd04977 83 ESEATVNLK 91 (92)
T ss_pred cceeEEEEE
Confidence 44455544
No 159
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.28 E-value=6e-11 Score=87.17 Aligned_cols=78 Identities=29% Similarity=0.413 Sum_probs=63.4
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecCC--CcEEEeeC-------CCEEEcCCCCC-CCEEEEEEEEcCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSG--GRRKIFEN-------GNLLISPVSRD-DSGIYSCTATNVH 165 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~~--~~~~~~~~-------~~l~i~~v~~~-d~G~y~C~~~~~~ 165 (505)
....+.+|+++.|.|.+.|.|.| .+.|++++..+... .++.+... ..|.|.++..+ |.|.|.|.|.|..
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~ 88 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF 88 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence 34568999999999999999998 69999999887643 45555433 26999999984 5899999999999
Q ss_pred CceeeeEEE
Q psy14886 166 GMDESKGRL 174 (505)
Q Consensus 166 g~~~~~~~l 174 (505)
|.....+.|
T Consensus 89 G~~~~~~~L 97 (98)
T cd05758 89 GSGTAIISL 97 (98)
T ss_pred CcccEEEEe
Confidence 998777655
No 160
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.28 E-value=2.6e-11 Score=87.47 Aligned_cols=73 Identities=27% Similarity=0.539 Sum_probs=57.7
Q ss_pred CCeEEEEeecCCCCCCeEEEEEC----CEEecCCCc--EEEee----------CCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKD----GNIIGSGGR--RKIFE----------NGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~----g~~~~~~~~--~~~~~----------~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
|+++.|.|.+.|.|.|.|.|+++ |..+..+.. ..... ...|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 68899999999999999999984 444433221 11111 136999999999999999999999999
Q ss_pred eeeeEEEEE
Q psy14886 168 DESKGRLIV 176 (505)
Q Consensus 168 ~~~~~~l~v 176 (505)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988888877
No 161
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.27 E-value=7e-11 Score=81.96 Aligned_cols=67 Identities=33% Similarity=0.554 Sum_probs=52.0
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCC--C-CCCeEEEEEEEcccCceEee
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNP--E-RDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~--~-~d~G~Y~C~~~~~~~~~~~~ 78 (505)
+.|.|.+.|.|.+.|+|+|++..+... ...++.+ .+++|.|..+.. . +|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~-----~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVA-----KDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCc-----CCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 579999999999999999999977422 2344544 467999998641 2 46999999999999976553
No 162
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.26 E-value=1.1e-10 Score=81.99 Aligned_cols=67 Identities=25% Similarity=0.510 Sum_probs=56.1
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
.+..+..|+++.|.|.+.+ +.+++.|++||.++..+.......++.|.|.+++.+|+|.|+|.+.+.
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 4567899999999999864 577999999999997653333445778999999999999999999865
No 163
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.26 E-value=2.2e-11 Score=87.76 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=51.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECc-CCCCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLN-SETLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~-~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
|.+|+++.|.|.+.+.|.+.|.|+|++..+. ..........|+.+. ..+|.|.+++ .+|+|.|+|.+..
T Consensus 9 v~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~-~~D~G~YtC~~~t 83 (95)
T cd05882 9 VAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQ-LSDEGEYTCSIFT 83 (95)
T ss_pred EecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCC-cccCEEEEEEEEe
Confidence 4689999999999999999999999876431 111111123455432 3689999999 9999999999986
No 164
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.25 E-value=4.8e-11 Score=85.45 Aligned_cols=73 Identities=15% Similarity=0.330 Sum_probs=57.6
Q ss_pred CCCCCceEEEEEEec-----cCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFG-----VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-----~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|++..|.|...+ +|.+.+.|+||+.++.. ..+....++.|.|.++. .+|+|.|+|.+.|..+..
T Consensus 7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~-------~~~~~~~~~~L~I~~v~-~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG-------DRKRFVKGSKLLIQNVT-EEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred EeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC-------CccEEecCCEEEEeeCC-hhhCEEEEEEEEecCCCE
Confidence 467999999998753 25789999999999873 23333377899999999 999999999999887765
Q ss_pred EeeEEE
Q psy14886 76 YSSAQL 81 (505)
Q Consensus 76 ~~~~~l 81 (505)
...+..
T Consensus 79 ~~~~t~ 84 (92)
T cd05757 79 QYNVTR 84 (92)
T ss_pred EEEEEE
Confidence 554433
No 165
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.24 E-value=8.8e-11 Score=81.84 Aligned_cols=71 Identities=35% Similarity=0.628 Sum_probs=59.4
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCC--cEEEeeCC-CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGG--RRKIFENG-NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~--~~~~~~~~-~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
+.|.|.+.|.|.|.+.|++++..+.... ++....++ .|.|.++...|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3689999999999999999999876542 33333343 59999999999999999999999999988888874
No 166
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.24 E-value=3.3e-11 Score=86.09 Aligned_cols=71 Identities=34% Similarity=0.506 Sum_probs=58.4
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
+.+|++++|.|.+.+ .|.+.+.|++++..+.. +....++.|.|.+++ .+|+|.|+|.+.|..|.....+
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~---------~~~~~~~~L~I~~v~-~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 13 VRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS---------RAMDFNGILTIRNVQ-LSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred EcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC---------cccccCCEEEECCCC-HHHCEEEEEEEeccCCeEeEEE
Confidence 478999999999975 67899999999876541 122346799999999 9999999999999998887776
Q ss_pred EE
Q psy14886 80 QL 81 (505)
Q Consensus 80 ~l 81 (505)
.|
T Consensus 83 ~l 84 (85)
T cd05754 83 TL 84 (85)
T ss_pred EE
Confidence 55
No 167
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.24 E-value=1.9e-10 Score=90.70 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=82.5
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
+|.|.+++..|+|.|.|.+.+..+.....+.|.|..+|.+... +.......|..+.|.|.+.+..++.+.+.|++++..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~-~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLS-LEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEe-CCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 4899999999999999999998888888899999877766443 333344467889999999997665678999998754
Q ss_pred ecC-----CCCCc----ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCC
Q psy14886 223 IGN-----MDLNE----LETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 223 ~~~-----~~~~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 265 (505)
... ..... ..........+.|.+.....++...|+|.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 211 01000 00000111123455555555567799999977543
No 168
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.24 E-value=5.6e-11 Score=85.68 Aligned_cols=80 Identities=18% Similarity=0.340 Sum_probs=61.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC-ceEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK-TRYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~-~~~~~~ 79 (505)
+.+|+++.|.|.+.+ |.+.+.|+|++..+..... ...++....+.|.|.+++ .+|+|.|+|.+.+..+ ....+.
T Consensus 8 v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~---~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~~~~~~~~~~~~ 82 (89)
T cd04979 8 VVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE---PEERLLVTEDGLLIRSVS-PADAGVYTCQSVEHGFKQTLATY 82 (89)
T ss_pred EECCCcEEEEEeCCC-CCceEEEEECCcccccccC---cCceEEEcCCCEEEccCC-HHHCEEEEEEEecCccceeEeEE
Confidence 358999999999977 7789999999987763211 134666666789999999 9999999999986543 344456
Q ss_pred EEEEEe
Q psy14886 80 QLRVLT 85 (505)
Q Consensus 80 ~l~v~~ 85 (505)
.|.|.+
T Consensus 83 ~l~V~~ 88 (89)
T cd04979 83 SLNVLE 88 (89)
T ss_pred EEEEec
Confidence 676653
No 169
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.23 E-value=7e-11 Score=83.64 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=55.5
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcE----EEECCeEEEEcCCCCCCCeEEEEEEEcccC--ceEe
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRY----FIQDNVLTIRYLNPERDPAMYQCRAKNQLK--TRYS 77 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~----~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~--~~~~ 77 (505)
|++++|.|.+.+.|.+.+.|+++++....... ...+. ....++|.|.+++ .+|+|.|+|.|.|..+ ....
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~s~L~I~~~~-~~DsG~Y~C~a~n~~~~~~~~~ 76 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIP---EVEEVKVPATTLRSTLTFPHAT-VEDSGTYECAAHESTQDQKAFK 76 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCce---EEEEEecCCcEEEEEEEECCCC-cCCCEEEEEEEEECccCcceeE
Confidence 89999999999988999999998764331100 00011 1124689999999 9999999999998765 4445
Q ss_pred eEEEEEE
Q psy14886 78 SAQLRVL 84 (505)
Q Consensus 78 ~~~l~v~ 84 (505)
++.|.|.
T Consensus 77 sv~i~V~ 83 (84)
T cd05861 77 KVNITVH 83 (84)
T ss_pred EEEEEEe
Confidence 5666654
No 170
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.22 E-value=6.2e-11 Score=83.21 Aligned_cols=69 Identities=41% Similarity=0.647 Sum_probs=53.6
Q ss_pred EEEEeecCCCCCCeEEEEECCEEec--------CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeee-EEEE
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIG--------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLI 175 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~--------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~ 175 (505)
++|.|.+.|.|.|.+.|++++.... ...+.....+++|.|.++..+|+|.|.|.|.|..|..... +.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 5799999999999999999643211 2344555567889999999999999999999999977443 4443
No 171
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.22 E-value=8.3e-11 Score=83.35 Aligned_cols=73 Identities=27% Similarity=0.550 Sum_probs=57.2
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCE---E--ecCC---CcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGN---I--IGSG---GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~---~--~~~~---~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
|+++.|.|.+.|.|.|.+.|++++. . +... .++.....+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 6889999999999999999999632 1 1111 122233346799999999999999999999999988888776
Q ss_pred E
Q psy14886 176 V 176 (505)
Q Consensus 176 v 176 (505)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 4
No 172
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.21 E-value=1e-10 Score=81.51 Aligned_cols=70 Identities=23% Similarity=0.508 Sum_probs=52.9
Q ss_pred eEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 7 LTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 7 ~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+.|.|.+.+ .|.+.+.|+|+++.+..... ...++.. ..++|.|.+++ .+|+|.|+|.+.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~---~~~~~~~~~~~~~~~L~I~~~~-~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNK---PDNKIKIRKKKKSSELQISKAS-LADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCC---CCceEEEEeCCcEEEEEECcCC-cccCEEEEEEEEeCCCceeEEEe
Confidence 579999874 67899999999998863211 1123332 23679999999 99999999999999988766554
No 173
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.20 E-value=2e-10 Score=82.43 Aligned_cols=75 Identities=20% Similarity=0.379 Sum_probs=59.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+.++|.|.+.+.|.+.+.|+|++..+... .+... ....|.|.+++ .+|.|.|+|.+.|..|..
T Consensus 6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~-------~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~n~~g~~ 77 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKE-------HRIGGYKVRKKKWTLILESVV-PSDSGKYTCIVENKYGSI 77 (85)
T ss_pred ecCCCcEEEEEEcCCCCCCeEEEEECCEECccc-------CceeEEEccCcEEEEEEeECC-cccCEEEEEEEEECCceE
Confidence 468999999999999999999999999887622 11111 22479999999 999999999999988887
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
..++.|.|
T Consensus 78 ~~~~~l~v 85 (85)
T cd05729 78 NHTYKVDV 85 (85)
T ss_pred EEEEEEeC
Confidence 76666653
No 174
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.19 E-value=9.9e-11 Score=81.06 Aligned_cols=60 Identities=25% Similarity=0.474 Sum_probs=50.2
Q ss_pred ceEEeeCCCeEEEEeecCCCCC-CeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~-~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
+...+.+|++++|.|.+.+.|. ..+.|++||..+.. ..+.|.|.++ .+|+|.|+|.|.+.
T Consensus 8 ~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 8 PWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 4456889999999999999875 47999999988732 2457899999 99999999999874
No 175
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.19 E-value=1.9e-10 Score=79.74 Aligned_cols=65 Identities=29% Similarity=0.571 Sum_probs=51.2
Q ss_pred EEEEeecCCCCCCeEEEEECCEEec--CCCcEEE-eeCCCEEEcCCC----CCCCEEEEEEEEcCCCceeee
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIG--SGGRRKI-FENGNLLISPVS----RDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~--~~~~~~~-~~~~~l~i~~v~----~~d~G~y~C~~~~~~g~~~~~ 171 (505)
+.|.|.+.|.|.|.++|+++|..+. .+.++.. ..+++|.|..+. .+|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4799999999999999999998763 3444444 346789998764 246999999999999977655
No 176
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.17 E-value=2e-10 Score=79.67 Aligned_cols=65 Identities=28% Similarity=0.613 Sum_probs=50.7
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecC--CCcEEEe-eCCCEEEcCCCC----CCCEEEEEEEEcCCCceeee
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIF-ENGNLLISPVSR----DDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~--~~~~~~~-~~~~l~i~~v~~----~d~G~y~C~~~~~~g~~~~~ 171 (505)
+.|.|.+.|.|.|+++|+++|..+.. ..+.... .+++|.|..+.. .|.|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 47999999999999999999998742 2233332 457888877764 37899999999999987654
No 177
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.17 E-value=1.2e-10 Score=81.16 Aligned_cols=67 Identities=28% Similarity=0.565 Sum_probs=53.8
Q ss_pred EEEEeecCC-CCCCeEEEEECCEEecCCCcEE---Ee---eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 107 VTIFCNPEA-APKPKFVWKKDGNIIGSGGRRK---IF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 107 v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~---~~---~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
+.|.|.+.| .|.+.+.|+++|..+....+.. +. ....|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 369999999 8999999999999886543322 21 1246999999999999999999999998776653
No 178
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.17 E-value=1.9e-10 Score=80.10 Aligned_cols=65 Identities=29% Similarity=0.608 Sum_probs=51.5
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCC--CcEEE-eeCCCEEEcCCCC----CCCEEEEEEEEcCCCceeee
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKI-FENGNLLISPVSR----DDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~--~~~~~-~~~~~l~i~~v~~----~d~G~y~C~~~~~~g~~~~~ 171 (505)
+.|.|.+.|.|.|+++|+++|..+... .+... ..++.|.|.++.. +|+|.|+|.|.|..|...+.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcc
Confidence 479999999999999999999987532 23333 2357899988754 68999999999999976553
No 179
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.15 E-value=1.3e-10 Score=80.45 Aligned_cols=56 Identities=29% Similarity=0.662 Sum_probs=46.7
Q ss_pred CCCCCceEEEEEEeccCC-CeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcc
Q psy14886 1 MDNQADLTWTCEAFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 71 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~-~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~ 71 (505)
+.+|++++|.|.+.+.|. ..+.|+||+..+.. .+++|.|.++ .+|+|.|+|.|.+.
T Consensus 12 v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------------~~~~l~i~~~--~~dsG~Y~C~a~~~ 68 (78)
T cd05752 12 IFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------------TTNSYRIRAA--NNDSGEYRCQTQGS 68 (78)
T ss_pred eeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------------cCCeEEEeec--ccCCEEeEEECCCC
Confidence 468999999999988775 57999999998741 2468889888 68999999999864
No 180
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.15 E-value=1.3e-10 Score=81.95 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=52.6
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|.+|+.++|.|.+.+ .+...+.|+|++..+.. ...++.|.|.+++ .+|+|.|+|.+.+..+...+
T Consensus 11 V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-----------~~~~~~l~I~~~~-~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 11 VFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-----------SHSNSNLSIPQAT-LSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred ecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-----------cCCCceEEECccC-HHHCEEEEEEEEeCCceecC
Confidence 578999999999854 55678999999987642 1125689999999 99999999999988775443
No 181
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.14 E-value=2.1e-10 Score=83.20 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=54.7
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEEC-cCCCCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELL-NSETLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l-~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
+.+|++++|.|.+.+.|.+.+.|++.+..+ ..........+|+.. ...+|.|.+++ .+|+|.|+|.+.+.. .
T Consensus 9 v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~-~~DsG~Y~C~~~t~~-~ 86 (95)
T cd07701 9 VVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVS-LSDEGQYTCSLFTMP-V 86 (95)
T ss_pred EecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCC-cccCEEEEEEeEeec-C
Confidence 478999999999999999999998743221 100001113456644 23589999999 999999999998643 2
Q ss_pred eEeeEEEE
Q psy14886 75 RYSSAQLR 82 (505)
Q Consensus 75 ~~~~~~l~ 82 (505)
....+.|.
T Consensus 87 ~~~~~~l~ 94 (95)
T cd07701 87 KTSKAYLT 94 (95)
T ss_pred ccEEEEEE
Confidence 34445544
No 182
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.13 E-value=2.4e-10 Score=81.29 Aligned_cols=73 Identities=21% Similarity=0.361 Sum_probs=57.0
Q ss_pred CCeEEEEeecCCC--CCCeEEEEECCEEecCCCcE---EE-----eeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 104 GGNVTIFCNPEAA--PKPKFVWKKDGNIIGSGGRR---KI-----FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 104 g~~v~l~C~~~~~--p~~~i~W~~~g~~~~~~~~~---~~-----~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
|+.+.|.|.+.+. |.+.+.|.+++..+...... .. .....|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 78899999877654321110 00 11246999999999999999999999999888887
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 183
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.13 E-value=4.3e-10 Score=75.40 Aligned_cols=63 Identities=29% Similarity=0.522 Sum_probs=52.1
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
+|++++|.|.+.+.+.+.+.|++++..+. ...+.......|.|.+++ ..|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-------~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-------ESNRLSASGSTLTIKSVS-LEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-------CCCEEecCCcEEEEeeCC-cccCEEEEEEEecCCC
Confidence 58999999998888889999999998776 122333456799999999 9999999999987643
No 184
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.13 E-value=5.8e-10 Score=80.69 Aligned_cols=67 Identities=34% Similarity=0.669 Sum_probs=54.0
Q ss_pred CCCeEEEEeecCCCCCCeEEEEECCEEecC--CCcEEEeeCCCEEEcCCCC-CCCEEEEEEEEcCCCceee
Q psy14886 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPVSR-DDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~--~~~~~~~~~~~l~i~~v~~-~d~G~y~C~~~~~~g~~~~ 170 (505)
.|+++.|.|.+.|.|.+.++|++++..+.. ..+. ...++.|.|.++.. .|+|.|+|.|.|..|...+
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRY-SLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCE-EEECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 346899999999999999999999998843 2233 23467899988874 8999999999999997654
No 185
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.12 E-value=5.9e-10 Score=79.91 Aligned_cols=78 Identities=17% Similarity=0.356 Sum_probs=58.3
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCE--ECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEE-cccCceEee
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGE--LLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK-NQLKTRYSS 78 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~--~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~-~~~~~~~~~ 78 (505)
.+|++++|.|.. +.|.+.+.|+|.+. .... ......++....++|.|.+++ .+|+|.|+|.+. +..+.....
T Consensus 9 ~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~---~~~~~~r~~~~~~~L~I~~~~-~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 9 VENNSTFLECLP-KSPQASVKWLFQRGGDQRKE---EVKTEERLIHTERGLLLRSLQ-RSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred ecCCcEEEEEEC-CCCCceEEEEEECCCCCccc---cccccccEEEecCeEEEeeCC-hhHCEEEEEEEEccCCeEEEEE
Confidence 589999999997 47889999999432 2111 011345777777889999999 999999999998 455556666
Q ss_pred EEEEEE
Q psy14886 79 AQLRVL 84 (505)
Q Consensus 79 ~~l~v~ 84 (505)
+.|.|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 777765
No 186
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.12 E-value=5.3e-10 Score=79.69 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=61.0
Q ss_pred CCCCCceEEEEEEe------cc-----CCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAF------GV-----PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~------~~-----p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
+.+|+.+.|.|... ++ ....+.|+|++..+...........|+...+..|.|.++. .+|+|.|+|.+.
T Consensus 12 ~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~-~eDSG~Y~C~~r 90 (104)
T cd05896 12 VLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAE-LQDSGLYTCVLR 90 (104)
T ss_pred EcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCC-hhhCeEEEEEEC
Confidence 46899999999972 11 2358999999865553321111224888899999999999 999999999999
Q ss_pred cccCceEeeEEEEE
Q psy14886 70 NQLKTRYSSAQLRV 83 (505)
Q Consensus 70 ~~~~~~~~~~~l~v 83 (505)
|........+.|+|
T Consensus 91 N~t~C~~~~i~l~V 104 (104)
T cd05896 91 NSTYCMKVSMSLTV 104 (104)
T ss_pred CCCcceEEEEEEEC
Confidence 98777766666554
No 187
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.10 E-value=8.7e-10 Score=78.97 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=61.4
Q ss_pred EEeeCCCeEEEEeecCC-----CCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 99 TYAGEGGNVTIFCNPEA-----APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~-----~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
..+.+|.+..|.|...+ .|.+.+.|+|+++++....+.. ..++.|.|.++..+|+|.|+|.+.+..+.....+.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t 83 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-VKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-ecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence 45778999999998643 2567999999999987654433 36778999999999999999999999887776654
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
..+
T Consensus 84 ~t~ 86 (92)
T cd05757 84 RTI 86 (92)
T ss_pred EEE
Confidence 443
No 188
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.10 E-value=6.7e-10 Score=79.26 Aligned_cols=75 Identities=29% Similarity=0.518 Sum_probs=60.6
Q ss_pred ceEEeeCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
....+.+|++++|.|.+.+ .|.+.+.|++++..+... ....++.|.|.++..+|+|.|+|.+.|..|.....+.|
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 9 RSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR---AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred CceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc---ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 4456889999999999865 678899999988664321 12335689999999999999999999999988877655
No 189
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.10 E-value=1.4e-09 Score=77.89 Aligned_cols=78 Identities=26% Similarity=0.451 Sum_probs=62.1
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEee----CCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~----~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l 174 (505)
..+..|+.+.|.|.+.+.|.+.+.|++++..+.......... ...|.|.++..+|.|.|.|.+.|..|....++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 346789999999999999999999999998876443332211 1258899999999999999999999988777766
Q ss_pred EE
Q psy14886 175 IV 176 (505)
Q Consensus 175 ~v 176 (505)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 53
No 190
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.09 E-value=4.9e-10 Score=79.76 Aligned_cols=71 Identities=32% Similarity=0.546 Sum_probs=56.5
Q ss_pred ceEEeeCCCeEEEEee-cCCCCCCeEEEEECCEEe--cCCCcEEEe-eCCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 97 SETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNII--GSGGRRKIF-ENGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~-~~~~p~~~i~W~~~g~~~--~~~~~~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
....+.+|+.+.|.|. ..|.|.+.+.|++++.++ ..+.+..+. .+|.|.|.+|..+|+|.|+|.|.|....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 3356889999999997 467799999999998754 233444343 4789999999999999999999987543
No 191
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.09 E-value=2.4e-10 Score=81.36 Aligned_cols=69 Identities=22% Similarity=0.351 Sum_probs=54.1
Q ss_pred CCCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
|.+|+.+.|.|.. .|.|.+.|.|++++.++... .+..++.. .++.|.|.+++ .+|+|.|+|.|.|....
T Consensus 15 v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~----~d~r~~~~~~~G~L~fs~v~-~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 15 VKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP----EDGRRFVSQTNGNLYIAKVE-ASDRGNYSCFVSSPSST 85 (96)
T ss_pred eeeCCcEEEeeCCCCCCCCCEEEEEECCcccccc----cCCCeEEeCCCCcEEEeecC-HhhCceeEEEEEecccC
Confidence 4689999999987 56899999999998764321 12334444 36999999999 99999999999986543
No 192
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.09 E-value=9.7e-10 Score=78.04 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=57.2
Q ss_pred CCceEEEEEEeccC--CCeEEEEECCEECcCCCCCCC---CCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 4 QADLTWTCEAFGVP--DVTYSWFRNGELLNSETLPLE---DQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 4 G~~~~l~C~~~~~p--~~~~~W~~~~~~l~~~~~~~~---~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
|++++|.|.+.+.+ ...+.|.+++..+........ .........++|.|.+++ .+|+|.|+|.|.|..+.....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~-~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVT-LSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCC-cccCEEEEEEEeecceEeccc
Confidence 89999999998754 578899998765432110000 000001234789999999 999999999999988877777
Q ss_pred EEEEEE
Q psy14886 79 AQLRVL 84 (505)
Q Consensus 79 ~~l~v~ 84 (505)
+.|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 888776
No 193
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.08 E-value=5.7e-10 Score=79.28 Aligned_cols=70 Identities=29% Similarity=0.419 Sum_probs=59.7
Q ss_pred ceEEeeCCCeEEEEee-cCCCCCCeEEEEECCEE-ecCCCcEEEeeCCCEEEcCCCCCCCE-EEEEEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNI-IGSGGRRKIFENGNLLISPVSRDDSG-IYSCTATNVHG 166 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~-~~~~p~~~i~W~~~g~~-~~~~~~~~~~~~~~l~i~~v~~~d~G-~y~C~~~~~~g 166 (505)
..+.+.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.++.+..+|.|.|.++..+|.| .|.|.|.+...
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 4577999999999997 69999999999987654 44566777777899999999999999 79999998653
No 194
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.07 E-value=2.1e-09 Score=77.46 Aligned_cols=79 Identities=27% Similarity=0.418 Sum_probs=59.9
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC----CcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCC-Cceeee
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG----GRRKIFENGNLLISPVSRDDSGIYSCTATNVH-GMDESK 171 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~----~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~-g~~~~~ 171 (505)
....+.+|+++.|.|.+.+ |.+.+.|++++..+... .+... ..+.|.|.+++.+|+|.|.|.|.+.. +....+
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-TEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-cCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 3456889999999999977 77899999999876543 23322 34569999999999999999998654 444445
Q ss_pred EEEEEE
Q psy14886 172 GRLIVL 177 (505)
Q Consensus 172 ~~l~v~ 177 (505)
..|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 666653
No 195
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.07 E-value=1.1e-09 Score=79.29 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=58.0
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECC--------EEecCCCcEEEee----CCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG--------NIIGSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g--------~~~~~~~~~~~~~----~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
..++.+.+|+++.|.|.+.+.|.+.+.|++.+ .....+.++.... ..+|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 35678999999999999999999999998632 2222334554422 23699999999999999999987
Q ss_pred CCCceeeeEEEEE
Q psy14886 164 VHGMDESKGRLIV 176 (505)
Q Consensus 164 ~~g~~~~~~~l~v 176 (505)
..+ ....+.|.|
T Consensus 84 ~~~-~~~~~~l~v 95 (95)
T cd07701 84 MPV-KTSKAYLTV 95 (95)
T ss_pred ecC-ccEEEEEEC
Confidence 433 344555543
No 196
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.07 E-value=1.1e-09 Score=77.48 Aligned_cols=74 Identities=26% Similarity=0.397 Sum_probs=54.8
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEecCCC----cEEEe---eCCCEEEcCCCCCCCEEEEEEEEcCCC--ceeeeEEE
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG----RRKIF---ENGNLLISPVSRDDSGIYSCTATNVHG--MDESKGRL 174 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~----~~~~~---~~~~l~i~~v~~~d~G~y~C~~~~~~g--~~~~~~~l 174 (505)
|++++|.|.+.+.|.+.+.|+++++...... +..+. ....|.|.+++.+|+|.|.|.|.|..+ .....+.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999998776432211 11111 134699999999999999999998766 55556666
Q ss_pred EEE
Q psy14886 175 IVL 177 (505)
Q Consensus 175 ~v~ 177 (505)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 663
No 197
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.07 E-value=2.4e-09 Score=77.27 Aligned_cols=79 Identities=19% Similarity=0.348 Sum_probs=57.5
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEe--------cCCCcEEEee----CCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFE----NGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~--------~~~~~~~~~~----~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
..+..+.+|+++.|.|.+.+.|.+.+.|++++..+ ..+.++.+.. ..+|.|.++..+|.|.|+|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 35577999999999999999999999999876532 1223443321 23699999999999999999986
Q ss_pred CCCceeeeEEEE
Q psy14886 164 VHGMDESKGRLI 175 (505)
Q Consensus 164 ~~g~~~~~~~l~ 175 (505)
....++.+.|+
T Consensus 84 -~~~~~~~~~~~ 94 (95)
T cd05882 84 -MPVRTAKATVT 94 (95)
T ss_pred -eccccEEEEEE
Confidence 22333344443
No 198
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.07 E-value=1.6e-09 Score=74.25 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=52.1
Q ss_pred ceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 6 ~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
.+.|+|... ++|+++|+||||+++|....... ..++.....++|.|...+ .+|.+.|+|.|.|.++..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~-~~~~~~t~~s~L~~~~~~-~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQ-ENGKTVSVSNTIRFPVDR-KDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccc-cCCceEEEEEEEEEEeee-ccCCcEEEEEEEChhhCC
Confidence 478999996 48999999999999997532211 223333345689999999 999999999999987653
No 199
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.03 E-value=6.6e-10 Score=79.49 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=50.8
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCC-------CCCCCCcEEEE-------CCeEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETL-------PLEDQDRYFIQ-------DNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~-------~~~~~~~~~~~-------~~~L~i~~~~~~~d~G~Y~C 66 (505)
+++|++|+|.|.+.+.+.+.+.|+++++....... .....+|+... ..+|.|.+++ .+|+|.|.|
T Consensus 4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~-~sDsgtY~C 82 (94)
T cd07690 4 GKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLK-IEDSDTYIC 82 (94)
T ss_pred eeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCC-HHHCEEEEE
Confidence 46899999999998888899999987643211100 00112222221 2469999999 999999999
Q ss_pred EEEcccCc
Q psy14886 67 RAKNQLKT 74 (505)
Q Consensus 67 ~~~~~~~~ 74 (505)
.+.|..+.
T Consensus 83 ~v~~~~~~ 90 (94)
T cd07690 83 EVEDKKEE 90 (94)
T ss_pred EECCccce
Confidence 99876543
No 200
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.03 E-value=8.4e-10 Score=76.81 Aligned_cols=67 Identities=30% Similarity=0.539 Sum_probs=51.4
Q ss_pred EEEEeecCC-CCCCeEEEEECCEEecCCC----cEEEee---CCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 107 VTIFCNPEA-APKPKFVWKKDGNIIGSGG----RRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 107 v~l~C~~~~-~p~~~i~W~~~g~~~~~~~----~~~~~~---~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
+.|.|.+.+ .|.+.+.|+++|+.+.... ++.... .+.|.|.++...|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999864 5778999999998885321 222221 246999999999999999999999998776653
No 201
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.03 E-value=4.6e-09 Score=75.59 Aligned_cols=78 Identities=26% Similarity=0.419 Sum_probs=61.8
Q ss_pred ceEEeeCCCeEEEEeecCCCCCC-eEEEEECCEEecC--CCcEEEeeC-------CCEEEcCCCCCC-CEEEEEEEEcCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGS--GGRRKIFEN-------GNLLISPVSRDD-SGIYSCTATNVH 165 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~-~i~W~~~g~~~~~--~~~~~~~~~-------~~l~i~~v~~~d-~G~y~C~~~~~~ 165 (505)
....+.+|+++.|.|.+.+.|.| .|.|..++..+.. ..++.+... .+|.|.++...| .|.|.|.|.|..
T Consensus 9 ~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~ 88 (98)
T cd05898 9 QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSF 88 (98)
T ss_pred ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCC
Confidence 45678899999999999888876 7899888776644 345655432 259999998766 799999999999
Q ss_pred CceeeeEEE
Q psy14886 166 GMDESKGRL 174 (505)
Q Consensus 166 g~~~~~~~l 174 (505)
|.....+.|
T Consensus 89 G~d~~~i~L 97 (98)
T cd05898 89 GSGTAIIQL 97 (98)
T ss_pred ccceEEEEe
Confidence 998777655
No 202
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.03 E-value=1.8e-09 Score=78.86 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECc-CCCCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLN-SETLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~-~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
|.+|++++|.|.+.+.+.+.+.|++.+..+. ..........|+.+ ...+|.|.+++ .+|+|.|+|.+.+.. .
T Consensus 9 v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~-~~DsG~Y~C~~~~~~-~ 86 (95)
T cd05717 9 VVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVS-LSDEGRYTCSLYTMP-V 86 (95)
T ss_pred EcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCC-cccCEEEEEEEecCC-C
Confidence 4689999999999887788999987433211 00000012346654 23579999999 999999999998654 2
Q ss_pred eEeeEEEEE
Q psy14886 75 RYSSAQLRV 83 (505)
Q Consensus 75 ~~~~~~l~v 83 (505)
....+.|.|
T Consensus 87 ~~~~~~~~v 95 (95)
T cd05717 87 QTAKATVTV 95 (95)
T ss_pred ceEEEEEEC
Confidence 344555543
No 203
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.02 E-value=1.7e-09 Score=75.30 Aligned_cols=60 Identities=23% Similarity=0.363 Sum_probs=52.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
|.+|+++.|.|...+. .+.+.|++|+.++. .+.++......|.|.+++ .+|+|.|.|.+.
T Consensus 8 v~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~-------~~~r~~~~~~GLlI~~~~-~~dsG~Y~C~s~ 67 (85)
T cd05872 8 VAPGADVVLPCQLRSN-LASPVWLFNGTPLN-------AQFSYRVGTDGLLILVTS-PEHSGTYRCYSE 67 (85)
T ss_pred EecCCCEEEECCCCCC-CccEEEEECCcccC-------CCcceEEeCCCCEEEECC-HhhCEEEEEEEe
Confidence 4689999999999764 67999999999986 346777777789999999 999999999987
No 204
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.00 E-value=2.8e-09 Score=75.12 Aligned_cols=67 Identities=25% Similarity=0.298 Sum_probs=53.7
Q ss_pred EEeeCCCeEEEEeecCC-CCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 99 TYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
..+.+|++++|.|.+.+ .+...+.|+++|..+... .....|.|.+++.+|+|.|+|.+.+..+...+
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-----CCCceEEECccCHHHCEEEEEEEEeCCceecC
Confidence 35889999999999854 456689999999866421 12457999999999999999999998875543
No 205
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.00 E-value=3.6e-09 Score=70.79 Aligned_cols=63 Identities=40% Similarity=0.679 Sum_probs=51.6
Q ss_pred CCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
+|+++.|.|.+.+.+.+.+.|++++..+. ...........|.|.++...|+|.|+|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999998888888999999998876 2223333455799999999999999999988654
No 206
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.96 E-value=6.3e-09 Score=74.58 Aligned_cols=83 Identities=33% Similarity=0.513 Sum_probs=65.9
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCC-eEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST-WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
+|.++.+..++.+++.|+|.++...+..+..|.|+++...... |....... ....+.+. +|.|++.|.|
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~---------~~~~~~i~-~L~p~t~Y~~ 71 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPG---------NETSYTIT-GLQPGTTYEF 71 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEET---------TSSEEEEE-SCCTTSEEEE
T ss_pred cCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeee---------eeeeeeec-cCCCCCEEEE
Confidence 5778999999999999999999877888999999999887665 44433221 22344555 4999999999
Q ss_pred EEEEEcCCCcCCCC
Q psy14886 360 KVIAGNELGYGEPS 373 (505)
Q Consensus 360 ~v~a~n~~G~~~~s 373 (505)
+|.|.|..|.|++|
T Consensus 72 ~v~a~~~~g~g~~S 85 (85)
T PF00041_consen 72 RVRAVNSDGEGPPS 85 (85)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEEEeCCcCcCCC
Confidence 99999999988653
No 207
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.96 E-value=5.7e-09 Score=75.10 Aligned_cols=74 Identities=24% Similarity=0.334 Sum_probs=58.4
Q ss_pred CCCCceEEEEEEeccCC-CeEEEEECCEECcCCCCCCCCCCcEEEE--------CCeEEEEcCCCCCC-CeEEEEEEEcc
Q psy14886 2 DNQADLTWTCEAFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFIQ--------DNVLTIRYLNPERD-PAMYQCRAKNQ 71 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~-~~~~W~~~~~~l~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~~d-~G~Y~C~~~~~ 71 (505)
.+|+.++|.|.+.+.|. ..|.|..++..|... ..+++.+. .+.|.|.++. ..| .|.|.|.|.|.
T Consensus 14 ~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~-----~~~r~~I~~~~~~~g~~S~L~I~~~~-~~d~~g~Y~C~a~N~ 87 (98)
T cd05898 14 VRGERGKVKCFIGSTPPPDRIAWAWKENVLESG-----TSERYTVERTSTGSGVLSTLTINNIM-EADFQTHYNCTAWNS 87 (98)
T ss_pred eCCCcEEEEEEEccCCCCcEEEEEEccccccCC-----CCCCEEEEEEccCCCcEEEEEECCCc-cccCCcEEEEEEEeC
Confidence 58999999999977665 568999988776532 34577663 3589999998 766 79999999999
Q ss_pred cCceEeeEEE
Q psy14886 72 LKTRYSSAQL 81 (505)
Q Consensus 72 ~~~~~~~~~l 81 (505)
.|.....+.|
T Consensus 88 ~G~d~~~i~L 97 (98)
T cd05898 88 FGSGTAIIQL 97 (98)
T ss_pred CccceEEEEe
Confidence 9998776655
No 208
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.94 E-value=1.9e-09 Score=76.66 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=53.8
Q ss_pred CCCCCceEEEEE-EeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCe-EEEEEEEccc
Q psy14886 1 MDNQADLTWTCE-AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPA-MYQCRAKNQL 72 (505)
Q Consensus 1 v~~G~~~~l~C~-~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G-~Y~C~~~~~~ 72 (505)
|.+|+.+.|.|. ..|.|.+.|.|++++..... ...|+.+ .++.|.|.+++ ..|+| .|.|.|.|..
T Consensus 15 V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~------~~~Ri~~~~~GnL~fs~v~-~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 15 VEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT------QDERVSMGQNGNLYFANVE-EQDSHPDYICHAHFPG 82 (95)
T ss_pred EecCCCEEEEecCCCCCCCCEEEEECCCCcccc------ccccEEECCCceEEEEEEe-hhhCCCCeEEEEEccc
Confidence 578999999997 58899999999987654321 3467776 46999999999 99999 8999999865
No 209
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.93 E-value=7.1e-09 Score=74.00 Aligned_cols=68 Identities=18% Similarity=0.436 Sum_probs=52.4
Q ss_pred CCCCCceEEEEEE-ec----cCCCeEEEEECCEECcCCCCCCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTWTCEA-FG----VPDVTYSWFRNGELLNSETLPLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~----~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
+.+|.+..|.|.- .+ .+.+.++||||+.++.. ...++.. ..+.|.|.++. .+|+|.|+|.+.+..+
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~------~~~~~~~~~~~~~L~I~~v~-~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK------DNEKFYSLKGSTYLHIIDVS-LNDSGYYTCKLQFTHE 79 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC------CCcceEecCCCCEEEEEEcC-hhhCEEEEEEEEEeeC
Confidence 3578999999973 22 35689999999999863 2233433 34689999999 9999999999998765
Q ss_pred ce
Q psy14886 74 TR 75 (505)
Q Consensus 74 ~~ 75 (505)
..
T Consensus 80 g~ 81 (95)
T cd05897 80 GK 81 (95)
T ss_pred CE
Confidence 54
No 210
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.91 E-value=1.1e-08 Score=72.73 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=62.3
Q ss_pred CCCCCceEEEEEEeccCCCe-EEEEECCEECcCCCCCCCCCCcE--EEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFGVPDVT-YSWFRNGELLNSETLPLEDQDRY--FIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~-~~W~~~~~~l~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|++|+++.|.|.++++|.+. +.|.+++..+............. ..-.+.|.+..++ .+|+|.|+|.|.|.......
T Consensus 15 v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk-~~E~G~YTf~a~N~~~~~s~ 93 (101)
T cd05860 15 VNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLK-GTEGGTYTFLVSNSDASASV 93 (101)
T ss_pred EECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecC-hhhCcEEEEEEECCCCeEEE
Confidence 57899999999999999987 99999988765332110000000 0023689999999 99999999999999888877
Q ss_pred eEEEEEE
Q psy14886 78 SAQLRVL 84 (505)
Q Consensus 78 ~~~l~v~ 84 (505)
.+.|.|.
T Consensus 94 tF~l~v~ 100 (101)
T cd05860 94 TFNVYVN 100 (101)
T ss_pred EEEEEEe
Confidence 7777764
No 211
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.89 E-value=2e-08 Score=71.95 Aligned_cols=78 Identities=26% Similarity=0.460 Sum_probs=57.1
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEEC--CEEe----cCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEE-cCCCceee
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKD--GNII----GSGGRRKIFENGNLLISPVSRDDSGIYSCTAT-NVHGMDES 170 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~--g~~~----~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~-~~~g~~~~ 170 (505)
.+.+.+|+++.|.|.. +.|.+.+.|++. +... ....+.. ...+.|.|.++..+|+|.|+|.+. +..+....
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~-~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~ 82 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI-HTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLA 82 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE-EecCeEEEeeCChhHCEEEEEEEEccCCeEEEE
Confidence 3567899999999996 478889999983 2221 1223333 345679999999999999999998 45565666
Q ss_pred eEEEEEE
Q psy14886 171 KGRLIVL 177 (505)
Q Consensus 171 ~~~l~v~ 177 (505)
.+.|+|.
T Consensus 83 ~~~l~v~ 89 (91)
T cd05871 83 KYTLHVI 89 (91)
T ss_pred EEEEEEe
Confidence 6777664
No 212
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.89 E-value=2.5e-09 Score=71.65 Aligned_cols=57 Identities=28% Similarity=0.465 Sum_probs=43.8
Q ss_pred CCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEE-E-CC----eEEEEcCCCCCCCeEEEEEE
Q psy14886 4 QADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-Q-DN----VLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 4 G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~-~~----~L~i~~~~~~~d~G~Y~C~~ 68 (505)
|+.++|.|.+ .+.+...+.|+|++..+.. ...... . .. .|.|.+++ .+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPE-------GSTTNRSTNSVSSTSRLTISNVT-PEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSE-------EEEEEEEETTTEEEEEEEESSCT-GGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccC-------cceeEeecccceeeeEEEEccCC-HHHCEEEEEEC
Confidence 8999999999 6677899999999876552 111111 1 22 29999999 99999999986
No 213
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.87 E-value=2.1e-08 Score=73.24 Aligned_cols=79 Identities=20% Similarity=0.375 Sum_probs=56.1
Q ss_pred CceEEeeCCCeEEEEeecCCCCCCeEEEEECCEE-e-------cCCCcEEEe----eCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNI-I-------GSGGRRKIF----ENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~-~-------~~~~~~~~~----~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
...+.+.+|++++|.|.+.+.+.+.+.|++.+.. + ..+.++... ....|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 4567799999999999998888889999863221 1 122344442 123599999999999999999987
Q ss_pred CCCceeeeEEEE
Q psy14886 164 VHGMDESKGRLI 175 (505)
Q Consensus 164 ~~g~~~~~~~l~ 175 (505)
... ..+.+.|.
T Consensus 84 ~~~-~~~~~~~~ 94 (95)
T cd05717 84 MPV-QTAKATVT 94 (95)
T ss_pred CCC-ceEEEEEE
Confidence 643 34445444
No 214
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.87 E-value=9.2e-09 Score=72.72 Aligned_cols=69 Identities=30% Similarity=0.548 Sum_probs=53.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc-eEeeE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT-RYSSA 79 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~-~~~~~ 79 (505)
|.+|++++|.|.+.+.|...+.|++++..+..+ ...+.+.++. .+|+|.|+|.+.+..+. ....+
T Consensus 11 v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-------------~~~~~~~~~~-~~~~g~y~C~~~~~~~~~~s~~~ 76 (80)
T PF13895_consen 11 VEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS-------------QNGLFIPNVS-PEDSGNYTCRASNGSGSNTSTSV 76 (80)
T ss_dssp EETTSEEEEEEEEESSSSSEEEEEETTEEEEEE-------------SSEEEESSEE-GGGTEEEEEEEEETTEEEEEEEE
T ss_pred EeCCCcEEEEEEEEcccceeeeeeeeeeeeeee-------------eeeeeeeeec-cccCEEEEEEEEeCCCCeEeeeE
Confidence 468999999999999888999999998877621 2237778889 99999999999985543 33344
Q ss_pred EEEE
Q psy14886 80 QLRV 83 (505)
Q Consensus 80 ~l~v 83 (505)
.|.|
T Consensus 77 ~v~V 80 (80)
T PF13895_consen 77 NVTV 80 (80)
T ss_dssp EEEE
T ss_pred EeeC
Confidence 4443
No 215
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.87 E-value=4.1e-08 Score=70.38 Aligned_cols=75 Identities=28% Similarity=0.597 Sum_probs=58.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC-CEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN-GELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~-~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+++.|.|.+.+.+...+.|+++ +..+. ...++... ..+|.|.+++ ..|+|.|+|.+.+..+..
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-------~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00410 6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-------ESGRFSVSRSGSNSTLTISNVT-PEDSGTYTCAATNSSGSA 77 (86)
T ss_pred EeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-------CCCcEEEEEcCCeeEEEEEeec-cccCeEEEEEEEcCCCeE
Confidence 35899999999998877899999998 77775 23344332 2589999999 999999999999877766
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
...+.|.|
T Consensus 78 ~~~~~l~V 85 (86)
T smart00410 78 SSTTTLTV 85 (86)
T ss_pred EEEEEEEE
Confidence 66655554
No 216
>smart00409 IG Immunoglobulin.
Probab=98.87 E-value=4.1e-08 Score=70.38 Aligned_cols=75 Identities=28% Similarity=0.597 Sum_probs=58.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEEC-CEECcCCCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRN-GELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~-~~~l~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
+.+|+++.|.|.+.+.+...+.|+++ +..+. ...++... ..+|.|.+++ ..|+|.|+|.+.+..+..
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~-------~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00409 6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA-------ESGRFSVSRSGSNSTLTISNVT-PEDSGTYTCAATNSSGSA 77 (86)
T ss_pred EeCCCeEEEEEEEccCCCCeEEEEECCCEEcC-------CCCcEEEEEcCCeeEEEEEeec-cccCeEEEEEEEcCCCeE
Confidence 35899999999998877899999998 77775 23344332 2589999999 999999999999877766
Q ss_pred EeeEEEEE
Q psy14886 76 YSSAQLRV 83 (505)
Q Consensus 76 ~~~~~l~v 83 (505)
...+.|.|
T Consensus 78 ~~~~~l~V 85 (86)
T smart00409 78 SSTTTLTV 85 (86)
T ss_pred EEEEEEEE
Confidence 66655554
No 217
>KOG0196|consensus
Probab=98.85 E-value=3.6e-07 Score=87.53 Aligned_cols=133 Identities=17% Similarity=0.250 Sum_probs=101.5
Q ss_pred cCCeEEEecCCCCCCEEEEEEEEecCCc------EEEEEEEEE-cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCce
Q psy14886 239 DGGLLEITNASFADAGEYECVVKSTVGK------ISTKTTVIV-EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH 311 (505)
Q Consensus 239 ~~~~l~i~~~~~~~~g~y~C~~~n~~g~------~~~~~~l~v-~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~ 311 (505)
......+..+.....+.|...|.|.... ....+.++. +..|.+...++......++++|+|..|...++.|..
T Consensus 396 t~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ild 475 (996)
T KOG0196|consen 396 TETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILD 475 (996)
T ss_pred ccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCccee
Confidence 4567888889888888888898886543 223334433 455667778999999999999999999888888999
Q ss_pred EEEEEEeCC--CCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCC
Q psy14886 312 YKIIARTNW--NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 384 (505)
Q Consensus 312 y~v~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~ 384 (505)
|+|+|.... ......+... .....+.+ |.|++.|.|+|+|...+|.|..|... .++|.+.
T Consensus 476 YEvky~ek~~~e~~~~~~~t~-----------~~~~ti~g-L~p~t~YvfqVRarT~aG~G~~S~~~-~fqT~~~ 537 (996)
T KOG0196|consen 476 YEVKYYEKDEDERSYSTLKTK-----------TTTATITG-LKPGTVYVFQVRARTAAGYGPYSGKH-EFQTLPS 537 (996)
T ss_pred EEEEEeeccccccceeEEecc-----------cceEEeec-cCCCcEEEEEEEEecccCCCCCCCce-eeeecCc
Confidence 999998874 3333333322 23566666 99999999999999999999999886 6777654
No 218
>smart00409 IG Immunoglobulin.
Probab=98.84 E-value=7.3e-08 Score=69.06 Aligned_cols=79 Identities=35% Similarity=0.643 Sum_probs=63.3
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEEC-CEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~-g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+...... ..|.|.++...|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 35678999999999998887889999998 877764455555444 46999999999999999999988777666665
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 554
No 219
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.84 E-value=7.3e-08 Score=69.06 Aligned_cols=79 Identities=35% Similarity=0.643 Sum_probs=63.3
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEEC-CEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~-g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+...... ..|.|.++...|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 35678999999999998887889999998 877764455555444 46999999999999999999988777666665
Q ss_pred EEE
Q psy14886 174 LIV 176 (505)
Q Consensus 174 l~v 176 (505)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 554
No 220
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.83 E-value=7.2e-09 Score=69.42 Aligned_cols=58 Identities=33% Similarity=0.647 Sum_probs=45.5
Q ss_pred CCeEEEEeec-CCCCCCeEEEEECCEEecCCCcEEEeeCCC-----EEEcCCCCCCCEEEEEEE
Q psy14886 104 GGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 104 g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~-----l~i~~v~~~d~G~y~C~~ 161 (505)
|++++|.|.+ .+.+...+.|++++..............+. |.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 667788999999987655433333333332 999999999999999986
No 221
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.81 E-value=4.3e-08 Score=70.02 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=57.6
Q ss_pred EEeeCCCeEEEEeecC------C-----CCCCeEEEEECCEEecCCC------cEEEeeCCCEEEcCCCCCCCEEEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPE------A-----APKPKFVWKKDGNIIGSGG------RRKIFENGNLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~------~-----~p~~~i~W~~~g~~~~~~~------~~~~~~~~~l~i~~v~~~d~G~y~C~~ 161 (505)
..+.+|+.+.|.|... + .....+.|+|++..+.... ......+..|.|.++..+|+|.|+|.+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence 5688999999999862 1 1234899999975554322 122334667999999999999999999
Q ss_pred EcCCCceeeeEEEEE
Q psy14886 162 TNVHGMDESKGRLIV 176 (505)
Q Consensus 162 ~~~~g~~~~~~~l~v 176 (505)
.|.......++.|+|
T Consensus 90 rN~t~C~~~~i~l~V 104 (104)
T cd05896 90 RNSTYCMKVSMSLTV 104 (104)
T ss_pred CCCCcceEEEEEEEC
Confidence 998877666666553
No 222
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.79 E-value=5.5e-08 Score=70.85 Aligned_cols=89 Identities=24% Similarity=0.367 Sum_probs=68.1
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEe
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 468 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~ 468 (505)
+|.++.+......++.|.|+++.. .++.+..|.|.|+..+...|....... .....+.+.+|.|++.|.|+|.|.
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~--~~~~~~~y~v~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~p~~~Y~~~v~a~ 77 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPED--DGGPITGYVVEYREKGSGDWKEVEVTP---GSETSYTLTGLKPGTEYEFRVRAV 77 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCCC--CCCcceeEEEEEeeCCCCCCEEeeccC---CcccEEEEccccCCCEEEEEEEEE
Confidence 566677766668999999998433 336788999999987656666554431 234678899999999999999999
Q ss_pred cCCCCCCCCceEEE
Q psy14886 469 NDVGPGPESEVVTI 482 (505)
Q Consensus 469 n~~G~g~~s~~~~~ 482 (505)
+..|.|+++....+
T Consensus 78 ~~~~~~~~s~~~~~ 91 (93)
T cd00063 78 NGGGESPPSESVTV 91 (93)
T ss_pred CCCccCCCcccccc
Confidence 99999988874433
No 223
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.78 E-value=7.1e-08 Score=68.48 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=58.7
Q ss_pred eccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcc---cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEE
Q psy14886 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL---ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 271 (505)
Q Consensus 195 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~ 271 (505)
|+++.|.|.+.+.+.+.+.+.|..++........... .........+.|.|.+++..|+|.|+|.|.|..|......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 6789999999988777788899887654322110000 0011122346899999999999999999999988887777
Q ss_pred EEEEc
Q psy14886 272 TVIVE 276 (505)
Q Consensus 272 ~l~v~ 276 (505)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77764
No 224
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.77 E-value=1e-07 Score=67.90 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=65.0
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCe-EEEEECCEEecCCCc--EEEee------CCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPK-FVWKKDGNIIGSGGR--RKIFE------NGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~-i~W~~~g~~~~~~~~--~~~~~------~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
....+.+|+++.|.|.++.+|.|+ +.|.+++..+..... ..... ...|.+..+..+|.|.|+|.|.|..+.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 456799999999999999999996 999998876543222 21111 135999999999999999999999999
Q ss_pred eeeeEEEEEE
Q psy14886 168 DESKGRLIVL 177 (505)
Q Consensus 168 ~~~~~~l~v~ 177 (505)
...++.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9988888764
No 225
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.77 E-value=7.2e-08 Score=68.14 Aligned_cols=68 Identities=26% Similarity=0.461 Sum_probs=47.8
Q ss_pred ceEEEEEEec-cCCCeEEEEECCEECcCCCCCC--CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 6 DLTWTCEAFG-VPDVTYSWFRNGELLNSETLPL--EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 6 ~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~--~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
.+.|.|.+.| .|.+.|+|+|+|+++....... ...+......+.|.|.... .+|.|.|+|.|.|....
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~~~~~y~C~a~n~~l~ 71 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSD-HDTGRTFTCRARNEALP 71 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCce-ecCCCEEEEEEcCccCC
Confidence 3689999987 6888999999999886331100 0112222333578888888 78899999999986644
No 226
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.75 E-value=5.2e-08 Score=68.82 Aligned_cols=71 Identities=35% Similarity=0.616 Sum_probs=54.5
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCc-eeeeEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM-DESKGRLIV 176 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~-~~~~~~l~v 176 (505)
..+.+|+++.|.|.+.+.|...+.|++++..+.... +.+.+.++..+|.|.|+|.+.+..+. .+..+.|.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 458899999999999988889999999987776321 12778889999999999999986543 233344443
No 227
>PHA03376 BARF1; Provisional
Probab=98.75 E-value=8.3e-08 Score=74.93 Aligned_cols=114 Identities=21% Similarity=0.272 Sum_probs=73.9
Q ss_pred CCCCceEEEEEEec---cCCCeEEEEECC----E-ECcC-----CCCCCCCCCcEEE----ECCeEEEEcCCCCCCCeEE
Q psy14886 2 DNQADLTWTCEAFG---VPDVTYSWFRNG----E-LLNS-----ETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 2 ~~G~~~~l~C~~~~---~p~~~~~W~~~~----~-~l~~-----~~~~~~~~~~~~~----~~~~L~i~~~~~~~d~G~Y 64 (505)
..|++++|.|...- .+...|.|+|.+ . -+.. ...+....+++.+ .+-+|.|.+++ .+|.|.|
T Consensus 24 ~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~-lSDdGtY 102 (221)
T PHA03376 24 FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAAN-ISHDGNY 102 (221)
T ss_pred eeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeee-ecCCceE
Confidence 47999999999862 346789999942 1 1110 0112234455554 23479999999 9999999
Q ss_pred EEEEEcccCceEeeEE--------EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECC
Q psy14886 65 QCRAKNQLKTRYSSAQ--------LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG 127 (505)
Q Consensus 65 ~C~~~~~~~~~~~~~~--------l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g 127 (505)
+|.++.........-. |.|.+....|.. -+..++.|...|.|.|.+.|..+.
T Consensus 103 ~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~-----------~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 103 LCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD-----------FSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred EEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC-----------CCeeEEEEecCCcCCchheecccc
Confidence 9999865443333222 334432222222 345689999989999999998754
No 228
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.75 E-value=8.4e-08 Score=68.54 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=54.5
Q ss_pred EEeeCCCeEEEEeec-C----CCCCCeEEEEECCEEecCCCc-EEEe-eCCCEEEcCCCCCCCEEEEEEEEcCCCceeee
Q psy14886 99 TYAGEGGNVTIFCNP-E----AAPKPKFVWKKDGNIIGSGGR-RKIF-ENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~-~----~~p~~~i~W~~~g~~~~~~~~-~~~~-~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~ 171 (505)
..+..|.+..|.|.- . ..+.++++|+|++.++..+.. .... ....|.|.++..+|+|.|+|.+.+..+...-.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~ 84 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN 84 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence 346778899999972 2 335679999999999875443 2222 23469999999999999999999987655433
No 229
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.74 E-value=1.2e-07 Score=66.04 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=52.4
Q ss_pred eEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~ 162 (505)
...+..|+++.|.|...+. .+.+.|+++|..+..+.+...... .|.|..++..|+|.|.|.+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~-GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTD-GLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCC-CCEEEECCHhhCEEEEEEEe
Confidence 4568899999999998765 669999999999877666555444 47799999999999999987
No 230
>KOG4802|consensus
Probab=98.73 E-value=2.1e-07 Score=81.47 Aligned_cols=136 Identities=25% Similarity=0.282 Sum_probs=87.8
Q ss_pred eEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccC-CCCCCCCCCceeeeecccc---ccEEEEEEeCCccccCCCCc
Q psy14886 345 ASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT-PADKPYQAPSRIGGGGGKI---GDLSISWEPLPREKQNAPNI 420 (505)
Q Consensus 345 ~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t-~~~~p~~~P~~~~~~~~~~---~~v~l~W~~~~~~~~~~~i~ 420 (505)
.++..++.|+..|+||+.|+|..|.-.+++++..+.. ....+|.+|.++.+..... -...|.|.|+ ....++.
T Consensus 210 ~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~---~sdlPv~ 286 (516)
T KOG4802|consen 210 TYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPS---KSDLPVE 286 (516)
T ss_pred eeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCC---CCCCcce
Confidence 5666669999999999999999988667766655443 3344555777777643221 1377788763 4456799
Q ss_pred eEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCC--CceEEEee
Q psy14886 421 YYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE--SEVVTIWH 484 (505)
Q Consensus 421 ~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~--s~~~~~~t 484 (505)
.|.|.|...- ..+-.+.......- ....+.|++|.|+..|.|.|.|..-.|.+.. -+.+.|.+
T Consensus 287 ~Yki~Ws~~v~s~k~~m~tks~~~k-~thq~si~~L~Pns~Y~VevqAi~y~g~~rLksek~~~F~~ 352 (516)
T KOG4802|consen 287 KYKITWSLYVNSAKASMITKSSYVK-DTHQFSIKELLPNSSYYVEVQAISYLGSRRLKSEKWMLFNT 352 (516)
T ss_pred eeEEEeehhhhhhhhhcccccceee-ccchhhhhhcCCCCeEEEEEEEEEeccCcccccceEEEEee
Confidence 9999997532 11111111110000 0113349999999999999999999998743 24455543
No 231
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.70 E-value=8.1e-08 Score=68.79 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=50.2
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCEEe-c-C------------CCcEEEee----C--CCEEEcCCCCCCCEEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-G-S------------GGRRKIFE----N--GNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~-~-~------------~~~~~~~~----~--~~l~i~~v~~~d~G~y~C 159 (505)
.+.+|++|+|.|.+.+.+.+.+.|+++++.. . . .+++.... . ..|.|.++..+|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4678999999999998888999999766332 1 1 11111111 1 249999999999999999
Q ss_pred EEEcCCCce
Q psy14886 160 TATNVHGMD 168 (505)
Q Consensus 160 ~~~~~~g~~ 168 (505)
.+.|..+..
T Consensus 83 ~v~~~~~~~ 91 (94)
T cd07690 83 EVEDKKEEV 91 (94)
T ss_pred EECCccceE
Confidence 998865543
No 232
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.70 E-value=1.6e-07 Score=67.25 Aligned_cols=69 Identities=9% Similarity=0.110 Sum_probs=49.4
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECc-CCCCCCCCCCcEEEEC-----CeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLN-SETLPLEDQDRYFIQD-----NVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~-~~~~~~~~~~~~~~~~-----~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
+.+|++++|.|.+.+.....+.|++.+..+- ..........|+.... .+|.|.+++ .+|+|.|.|.+..
T Consensus 9 v~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq-~~D~G~Y~Cqv~t 83 (95)
T cd05881 9 VVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVS-LSDEGRYFCQLYT 83 (95)
T ss_pred EcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCC-cccCEEEEEEEEc
Confidence 4689999999999887777889998664331 1111111345665422 369999999 9999999999874
No 233
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.70 E-value=1.5e-07 Score=69.06 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=49.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCE-----ECc----CC---CCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGE-----LLN----SE---TLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~-----~l~----~~---~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|+++.|.|.....+...+.|+|+.. .+. .. ......++|..+ .+++|.|.+++ .+|+|.|+|.
T Consensus 10 ~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~-~~D~G~Y~~~ 88 (105)
T cd05774 10 VAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVT-QKDTGFYTLQ 88 (105)
T ss_pred ccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCC-cccCEEEEEE
Confidence 4689999999986433456899999632 110 00 000012455555 56899999999 9999999999
Q ss_pred EEccc
Q psy14886 68 AKNQL 72 (505)
Q Consensus 68 ~~~~~ 72 (505)
+.+..
T Consensus 89 v~~~~ 93 (105)
T cd05774 89 TITTN 93 (105)
T ss_pred EEeCC
Confidence 98766
No 234
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.69 E-value=1e-07 Score=69.24 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=50.6
Q ss_pred CCceEEEEEEeccCCCeEEEEECCEECcCC-----------CCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEcc
Q psy14886 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSE-----------TLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKNQ 71 (505)
Q Consensus 4 G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~-----------~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~~ 71 (505)
|++|+|.|.+...+...|.|+|+....... ......++|+.+ .+++|.|.+++ .+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~-~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLT-KEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCC-chhcEEEEEEEEcC
Confidence 899999999876566789999976433211 000123355555 56899999999 99999999999876
Q ss_pred cCc
Q psy14886 72 LKT 74 (505)
Q Consensus 72 ~~~ 74 (505)
.+.
T Consensus 80 ~~~ 82 (92)
T cd05741 80 NGV 82 (92)
T ss_pred CCc
Confidence 533
No 235
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.69 E-value=2e-07 Score=69.67 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=57.4
Q ss_pred CCCceEEEEEEeccC------CCeEEEEECCE------E-C-cCCC---CCCCCCCcEEEE-----CCeEEEEcCCCCCC
Q psy14886 3 NQADLTWTCEAFGVP------DVTYSWFRNGE------L-L-NSET---LPLEDQDRYFIQ-----DNVLTIRYLNPERD 60 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p------~~~~~W~~~~~------~-l-~~~~---~~~~~~~~~~~~-----~~~L~i~~~~~~~d 60 (505)
.|++++|.|.+...| ...|.|+|... . + .... ......+|+... ..+|.|.+++ .+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~-~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLR-LED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCC-hHH
Confidence 499999999987642 36799999531 0 0 1000 001123566552 3589999999 999
Q ss_pred CeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 61 PAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
+|.|+|.+.+..+.....+.|.|..
T Consensus 80 sG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 80 YGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CEEEEEEEEecccceEEEEEEEEEE
Confidence 9999999998877777778887764
No 236
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.68 E-value=1.5e-07 Score=64.60 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=47.2
Q ss_pred EEEEeecCC-CCCCeEEEEECCEEecCCCc-----EEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCce
Q psy14886 107 VTIFCNPEA-APKPKFVWKKDGNIIGSGGR-----RKIFENGNLLISPVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 107 v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~-----~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~ 168 (505)
+.|.|...+ .|.++|+|+++++.+..... ......++|.|.....+|++.|+|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689999754 58889999999999864221 111123468999999999999999999987654
No 237
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.65 E-value=2.8e-07 Score=68.86 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=56.7
Q ss_pred CCCceEEEEEEeccC------CCeEEEEECC-----E-ECc--CC-CCC--CCCCCcEEE-----ECCeEEEEcCCCCCC
Q psy14886 3 NQADLTWTCEAFGVP------DVTYSWFRNG-----E-LLN--SE-TLP--LEDQDRYFI-----QDNVLTIRYLNPERD 60 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p------~~~~~W~~~~-----~-~l~--~~-~~~--~~~~~~~~~-----~~~~L~i~~~~~~~d 60 (505)
.|++++|.|.+...+ ...|.|+|.. . .+. .. ... .....|+.. .+.+|.|.+++ .+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~-~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLR-LED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCC-HHH
Confidence 489999999997642 5789999962 1 111 00 000 012223332 34789999999 999
Q ss_pred CeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 61 PAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 61 ~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
+|.|+|.+.+..+.....+.|.|..
T Consensus 80 ~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 80 SGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEEE
Confidence 9999999998777677778888764
No 238
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.62 E-value=4.6e-07 Score=62.33 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=51.2
Q ss_pred ceEEEEEEec-cCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc-eEeeEEEEE
Q psy14886 6 DLTWTCEAFG-VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT-RYSSAQLRV 83 (505)
Q Consensus 6 ~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v 83 (505)
.+.|.|.+.| .|++.|+|+|++.++...........+-....++|.|..-. .+|...|+|.|.|..-. ......|.|
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~-eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTK-EDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECch-hhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 3789999976 78999999999999975321110111222234678887666 66666899999986532 333455555
Q ss_pred E
Q psy14886 84 L 84 (505)
Q Consensus 84 ~ 84 (505)
.
T Consensus 80 ~ 80 (82)
T cd05883 80 Q 80 (82)
T ss_pred E
Confidence 4
No 239
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.61 E-value=1.3e-07 Score=68.17 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=48.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcc
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 71 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~ 71 (505)
|.+|++|+|.|... .+...+.|+|+|....... .......+.+.|.+++ .+|+|.|+|.+.+.
T Consensus 13 V~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~------~~~~~~~~~f~i~~v~-~~~~G~Y~C~~~~~ 75 (91)
T cd05751 13 VPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK------PPEPQNKAKFFIPSMK-REHAGRYRCYYRSG 75 (91)
T ss_pred cCCCCcEEEEEecC-CCCCEEEEEECCCCccccc------cCCCceeEEEEccCCC-hhHCEEEEEEEECC
Confidence 57999999999885 5678899999987544210 0111234679999999 99999999999875
No 240
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.61 E-value=6.9e-07 Score=66.42 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=54.6
Q ss_pred CCCceEEEEEEeccC------------CCeEEEEEC--CE-E--CcCCCC----CCCCCCcEEE-------ECCeEEEEc
Q psy14886 3 NQADLTWTCEAFGVP------------DVTYSWFRN--GE-L--LNSETL----PLEDQDRYFI-------QDNVLTIRY 54 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p------------~~~~~W~~~--~~-~--l~~~~~----~~~~~~~~~~-------~~~~L~i~~ 54 (505)
.|++++|.|...... .+.|.|+|- ++ + +..... .....+|+.+ .+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999996432 368999994 21 1 110000 0112246655 357999999
Q ss_pred CCCCCCCeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 55 LNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 55 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
++ .+|+|.|+|.+.+..........|.|..
T Consensus 81 l~-~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LR-SNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cc-cccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 99 9999999999987655555566666653
No 241
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.61 E-value=1e-06 Score=63.10 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=51.2
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEe--------cCCCcEEEee-CC---CEEEcCCCCCCCEEEEEEEEc
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--------GSGGRRKIFE-NG---NLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~--------~~~~~~~~~~-~~---~l~i~~v~~~d~G~y~C~~~~ 163 (505)
.++.+.+|+++.|.|.+.+.....+.|++.+..+ ..+.|+.... ++ +|.|.+++.+|.|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 4577999999999999988766678888755332 2345555443 22 499999999999999999975
No 242
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.60 E-value=3.4e-07 Score=68.41 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=56.5
Q ss_pred CCCceEEEEEEeccC----------CCeEEEEECC--EECc-----CCC--CCCCCCCcEEE-------ECCeEEEEcCC
Q psy14886 3 NQADLTWTCEAFGVP----------DVTYSWFRNG--ELLN-----SET--LPLEDQDRYFI-------QDNVLTIRYLN 56 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p----------~~~~~W~~~~--~~l~-----~~~--~~~~~~~~~~~-------~~~~L~i~~~~ 56 (505)
-|++++|.|.....+ ...|.|+|.. +... ... ......+|+.+ ...+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999997533 3779999952 1110 000 01112346654 23689999999
Q ss_pred CCCCCeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 57 PERDPAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 57 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
.+|+|.|.|.+.......+..+.|.|..
T Consensus 81 -~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 -SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred -hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999988666677778887764
No 243
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.57 E-value=1.8e-07 Score=67.38 Aligned_cols=65 Identities=15% Similarity=0.287 Sum_probs=48.4
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
..|..|++|+|.|... .+...+.|+++|..............+.|.|.+++.+|+|.|+|.+.+.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4588999999999885 5566899999987543211101112345999999999999999999875
No 244
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.56 E-value=7.8e-07 Score=65.68 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=51.6
Q ss_pred CCceEEEEEEeccC---CCeEEEEECCE--EC---cCCC-----CCCCCCCcEEEE-------CCeEEEEcCCCCCCCeE
Q psy14886 4 QADLTWTCEAFGVP---DVTYSWFRNGE--LL---NSET-----LPLEDQDRYFIQ-------DNVLTIRYLNPERDPAM 63 (505)
Q Consensus 4 G~~~~l~C~~~~~p---~~~~~W~~~~~--~l---~~~~-----~~~~~~~~~~~~-------~~~L~i~~~~~~~d~G~ 63 (505)
|++++|.|.+.... ...+.|+|... .+ .... ......+|+... ..+|.|.+++ .+|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~-~~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVR-ASDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCC-hhhCEE
Confidence 89999999996321 35789998542 11 0000 001122455442 2589999999 999999
Q ss_pred EEEEEEcccCceEeeEEEEE
Q psy14886 64 YQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 64 Y~C~~~~~~~~~~~~~~l~v 83 (505)
|+|.+.+..+..+..+.|.|
T Consensus 80 Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEecCCcEEEEEEEEEE
Confidence 99999987666555566554
No 245
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.56 E-value=5.9e-07 Score=65.89 Aligned_cols=67 Identities=28% Similarity=0.523 Sum_probs=51.2
Q ss_pred EeeCCCeEEEEeecCCCCCCeEEEEECCE-----Eec--------------CCCcEEEeeCCCEEEcCCCCCCCEEEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGN-----IIG--------------SGGRRKIFENGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~~~i~W~~~g~-----~~~--------------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~ 160 (505)
.+.+|+++.|.|.........+.|+|... .+. ..+|..+..+++|.|.+++..|+|.|+|.
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~ 88 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ 88 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence 47789999999976544445999999521 110 13466667788999999999999999999
Q ss_pred EEcCCC
Q psy14886 161 ATNVHG 166 (505)
Q Consensus 161 ~~~~~g 166 (505)
+.+...
T Consensus 89 v~~~~~ 94 (105)
T cd05774 89 TITTNF 94 (105)
T ss_pred EEeCCc
Confidence 998764
No 246
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.55 E-value=2.3e-07 Score=67.68 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=54.8
Q ss_pred CCCCceEEEEEEec-cCCCeEEEEECCEECcCCCC----------CCCCCCcEEE--ECCeEEEEcCCCCCCCeEEEEEE
Q psy14886 2 DNQADLTWTCEAFG-VPDVTYSWFRNGELLNSETL----------PLEDQDRYFI--QDNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~----------~~~~~~~~~~--~~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
..|++|+|.|.... .....+.|+|+...+..... .....+|+.+ .+.+|.|.+++ .+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~-~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLK-MEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCc-hHHCEEEEEEE
Confidence 37999999999864 44678999997543321111 0011235554 24789999999 99999999999
Q ss_pred EcccCce-EeeEEEEE
Q psy14886 69 KNQLKTR-YSSAQLRV 83 (505)
Q Consensus 69 ~~~~~~~-~~~~~l~v 83 (505)
....+.. ...+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 8766543 33555555
No 247
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.52 E-value=4.9e-07 Score=71.37 Aligned_cols=84 Identities=13% Similarity=0.268 Sum_probs=60.3
Q ss_pred CCCCCceEEEEEEe-ccCCCeEEEEECCEECcCC-----CCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAF-GVPDVTYSWFRNGELLNSE-----TLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~-----~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
|++|++++|.|... +.....+.|+|.++.+..- ...-..++|+.. ..++|.|.+++ .+|+|.|+|.+.
T Consensus 27 V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt-~sDeGcY~C~F~ 105 (189)
T PHA02987 27 VSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVS-LKDNGCYTCIFN 105 (189)
T ss_pred EcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCC-hhhCeEEEEEEE
Confidence 57999999999985 5557889999964422210 111112346664 56799999999 999999999986
Q ss_pred -cccC-ceEeeEEEEEEe
Q psy14886 70 -NQLK-TRYSSAQLRVLT 85 (505)
Q Consensus 70 -~~~~-~~~~~~~l~v~~ 85 (505)
-+.| .......|.|..
T Consensus 106 tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 106 TLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred ecCCCCCceeEEEEEEEc
Confidence 3455 666678888875
No 248
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.50 E-value=1.4e-06 Score=63.67 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=52.3
Q ss_pred CCceEEEEEEeccC-CCeEEEEECCE----ECc------CCCCCCCCCCcEEE-----ECCeEEEEcCCCCCCCeEEEEE
Q psy14886 4 QADLTWTCEAFGVP-DVTYSWFRNGE----LLN------SETLPLEDQDRYFI-----QDNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 4 G~~~~l~C~~~~~p-~~~~~W~~~~~----~l~------~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
|++++|.|...... ...|.|+|... .+. ........++|... .+.+|.|.+++ .+|+|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~-~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVT-LEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCc-eeeeEEEEEE
Confidence 89999999986433 34799998432 110 00111112234333 34689999999 9999999999
Q ss_pred EE-cccCceEeeEEEEE
Q psy14886 68 AK-NQLKTRYSSAQLRV 83 (505)
Q Consensus 68 ~~-~~~~~~~~~~~l~v 83 (505)
+. ...|.....+.|.|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 86 46677776777776
No 249
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.50 E-value=1.6e-06 Score=63.83 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=52.5
Q ss_pred CceEEEEEEeccC---CCeEEEEECCEE----C---c---CCCCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEEE
Q psy14886 5 ADLTWTCEAFGVP---DVTYSWFRNGEL----L---N---SETLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 5 ~~~~l~C~~~~~p---~~~~~W~~~~~~----l---~---~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~C 66 (505)
++++|.|.+...+ ...|.|+|.... + . .........+|.... +.+|.|.+++ .+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~-~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLR-LEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCC-cccCEEEEE
Confidence 5799999997643 457999995421 1 0 001111123454432 4689999999 999999999
Q ss_pred EEEc-ccCceEeeEEEEE
Q psy14886 67 RAKN-QLKTRYSSAQLRV 83 (505)
Q Consensus 67 ~~~~-~~~~~~~~~~l~v 83 (505)
.+.. ..|..+..+.|.|
T Consensus 80 ~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEeCCCCcEEEEEEEEe
Confidence 9874 5677777777766
No 250
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.49 E-value=1e-06 Score=62.15 Aligned_cols=63 Identities=19% Similarity=0.516 Sum_probs=44.8
Q ss_pred EEEEeecCC-CCCCeEEEEECCEEecCCCcE-EEeeC-------CCEEEcCCCCCCCEEEEEEEEcCCCcee
Q psy14886 107 VTIFCNPEA-APKPKFVWKKDGNIIGSGGRR-KIFEN-------GNLLISPVSRDDSGIYSCTATNVHGMDE 169 (505)
Q Consensus 107 v~l~C~~~~-~p~~~i~W~~~g~~~~~~~~~-~~~~~-------~~l~i~~v~~~d~G~y~C~~~~~~g~~~ 169 (505)
+.|.|.+.| .|.+.|+|+++|+.+...... ....+ ..|.+.....+|.|.|+|.|.|......
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~ 73 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG 73 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence 689999987 588899999999987543211 11112 2477777777889999999998754443
No 251
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.49 E-value=1.8e-06 Score=62.66 Aligned_cols=79 Identities=18% Similarity=0.336 Sum_probs=53.1
Q ss_pred CceEEEEEEec-cC---CCeEEEEECC--E--ECc--CC----CCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEE
Q psy14886 5 ADLTWTCEAFG-VP---DVTYSWFRNG--E--LLN--SE----TLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQ 65 (505)
Q Consensus 5 ~~~~l~C~~~~-~p---~~~~~W~~~~--~--~l~--~~----~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~ 65 (505)
.+++|.|.... .| ..+|+|.|.. . .+. .. ...-...+|.... +++|.|.+++ .+|+|.|+
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~-~~D~G~Y~ 79 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLE-LEDEGVYI 79 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCc-cccCEEEE
Confidence 37899999974 23 2379999841 1 110 00 0111223555543 3799999999 99999999
Q ss_pred EEEEc-ccCceEeeEEEEEE
Q psy14886 66 CRAKN-QLKTRYSSAQLRVL 84 (505)
Q Consensus 66 C~~~~-~~~~~~~~~~l~v~ 84 (505)
|.+.+ ..|..+..+.|.|.
T Consensus 80 C~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 80 CEFATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEEEeCCCCCeEEEEEEEEC
Confidence 99998 67777777877763
No 252
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.46 E-value=1.6e-06 Score=64.97 Aligned_cols=69 Identities=20% Similarity=0.385 Sum_probs=46.7
Q ss_pred CCCCceEEEEEEecc----CCCeEEEEE---------------CCEECcCCCCCCCCCCcEEE------ECCeEEEEcCC
Q psy14886 2 DNQADLTWTCEAFGV----PDVTYSWFR---------------NGELLNSETLPLEDQDRYFI------QDNVLTIRYLN 56 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~----p~~~~~W~~---------------~~~~l~~~~~~~~~~~~~~~------~~~~L~i~~~~ 56 (505)
-.|++++|.|.+... +...|.|.+ +|..... ..-..++|... .+.+|.|.+++
T Consensus 11 ~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~--~~~~f~~Rv~f~g~~~~~daSI~I~nv~ 88 (116)
T cd05879 11 TVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYID--DVGPFKERIEWVGNPSRKDGSIVIHNLD 88 (116)
T ss_pred EcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecc--cccCccCceEEeCCCCcCeeEEEEccCC
Confidence 479999999999753 247899944 2222110 00112345543 34689999999
Q ss_pred CCCCCeEEEEEEEcccC
Q psy14886 57 PERDPAMYQCRAKNQLK 73 (505)
Q Consensus 57 ~~~d~G~Y~C~~~~~~~ 73 (505)
.+|+|.|+|.+.|.-.
T Consensus 89 -~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 89 -YTDNGTFTCDVKNPPD 104 (116)
T ss_pred -cccCEEEEEEEEcCCC
Confidence 9999999999997544
No 253
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.45 E-value=1.4e-06 Score=63.24 Aligned_cols=64 Identities=28% Similarity=0.507 Sum_probs=48.3
Q ss_pred CCeEEEEeecCCCCCCeEEEEECCEEec------------------CCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIG------------------SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 104 g~~v~l~C~~~~~p~~~i~W~~~g~~~~------------------~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
|++|+|.|.........|.|+++..... -..+..+..+++|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 7899999998765566999998543211 0234445556789999999999999999998776
Q ss_pred Cc
Q psy14886 166 GM 167 (505)
Q Consensus 166 g~ 167 (505)
+.
T Consensus 81 ~~ 82 (92)
T cd05741 81 GV 82 (92)
T ss_pred Cc
Confidence 43
No 254
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.43 E-value=3.3e-06 Score=60.61 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=54.0
Q ss_pred CceEEEEEEecc-CCCeEEEEECC----EECcCC------CCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEEEEE
Q psy14886 5 ADLTWTCEAFGV-PDVTYSWFRNG----ELLNSE------TLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 5 ~~~~l~C~~~~~-p~~~~~W~~~~----~~l~~~------~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
++++|.|..... ....|+|.|-. ..+..- .+.....+|.... +++|.|.+++ .+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~-~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVG-FSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCC-ccccEEEEEEE
Confidence 479999999743 34789999842 122100 1111223455543 6799999999 99999999997
Q ss_pred E-cccCceEeeEEEEE
Q psy14886 69 K-NQLKTRYSSAQLRV 83 (505)
Q Consensus 69 ~-~~~~~~~~~~~l~v 83 (505)
. .+.|....++.|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 5 67788888888876
No 255
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.43 E-value=9.2e-07 Score=66.59 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=50.1
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCE---EC---cCC-CCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGE---LL---NSE-TLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~---~l---~~~-~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|.+.+.+...+.|+|... +. ... .......+|+.+. ..+|.|.+++ .+|+|.|.|.
T Consensus 10 ~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~-~~DsG~Y~C~ 88 (109)
T cd04983 10 VQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQ-LSDSAVYFCA 88 (109)
T ss_pred EcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCC-HHHCEEEEEE
Confidence 4689999999999877778999999532 10 000 0001234566542 3489999999 9999999999
Q ss_pred EEccc
Q psy14886 68 AKNQL 72 (505)
Q Consensus 68 ~~~~~ 72 (505)
+.+..
T Consensus 89 ~~~~~ 93 (109)
T cd04983 89 LSESG 93 (109)
T ss_pred EecCC
Confidence 98643
No 256
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.41 E-value=2.9e-06 Score=62.83 Aligned_cols=81 Identities=21% Similarity=0.339 Sum_probs=55.3
Q ss_pred CCceEEEEEEeccC-----------CCeEEEEEC-----CEECcCCCC----------CCCCCCcEEE-------ECCeE
Q psy14886 4 QADLTWTCEAFGVP-----------DVTYSWFRN-----GELLNSETL----------PLEDQDRYFI-------QDNVL 50 (505)
Q Consensus 4 G~~~~l~C~~~~~p-----------~~~~~W~~~-----~~~l~~~~~----------~~~~~~~~~~-------~~~~L 50 (505)
|++++|.|.+.-.| ...|.|++- ++......+ .....+|..+ .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78999999997433 258999983 111111100 0113345554 24799
Q ss_pred EEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 51 TIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 51 ~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
.|.+++ .+|+|.|+|.+..........+.|.|..
T Consensus 82 ~i~~v~-~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLR-ASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccc-cccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999 9999999999998776677777777764
No 257
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.38 E-value=1.4e-06 Score=63.66 Aligned_cols=69 Identities=28% Similarity=0.488 Sum_probs=48.7
Q ss_pred CCCceEEEEEEecc-C-CCeEEEEECCEECcCCCC---CC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 3 NQADLTWTCEAFGV-P-DVTYSWFRNGELLNSETL---PL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 3 ~G~~~~l~C~~~~~-p-~~~~~W~~~~~~l~~~~~---~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
.|+.++|.|.+.|. | ...|+|+++|..+..... .. ...+.+. ..+.|.+.... ..|.|.|+|.|.+...
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~-~~s~l~v~~~~-~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYS-VSSQLTVSPSD-WNSGDTYTCVVTHESL 86 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEE-EEEEEEECHHH-hCCCCCEEEEEEeCCC
Confidence 68999999999986 6 478999999998874321 11 1111222 23467777666 6799999999987654
No 258
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.37 E-value=7.5e-06 Score=60.07 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=50.5
Q ss_pred CceEEEEEEeccC---CCeEEEEECC---EE--Cc--C---C-CCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEE
Q psy14886 5 ADLTWTCEAFGVP---DVTYSWFRNG---EL--LN--S---E-TLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 5 ~~~~l~C~~~~~p---~~~~~W~~~~---~~--l~--~---~-~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y 64 (505)
.+++|.|.....+ ...|.|+|.. .+ +. . . ......++|.... +.+|.|.+++ .+|+|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~-~sD~GtY 79 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAV-QADEGKY 79 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCc-cccceEE
Confidence 3789999996533 4589999932 11 11 0 0 0001112344332 4689999999 9999999
Q ss_pred EEEEEc-ccCceEeeEEEEE
Q psy14886 65 QCRAKN-QLKTRYSSAQLRV 83 (505)
Q Consensus 65 ~C~~~~-~~~~~~~~~~l~v 83 (505)
.|.+.+ ..|..+..+.|.|
T Consensus 80 ~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 80 KCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEeCCCCCeeeEEEEEe
Confidence 999986 6666666666665
No 259
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.36 E-value=3.5e-06 Score=62.34 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=54.9
Q ss_pred CCceEEEEEEeccC-------CCeEEEEECC-----EECc----CCC---CCCCCCCcEEEE-------CCeEEEEcCCC
Q psy14886 4 QADLTWTCEAFGVP-------DVTYSWFRNG-----ELLN----SET---LPLEDQDRYFIQ-------DNVLTIRYLNP 57 (505)
Q Consensus 4 G~~~~l~C~~~~~p-------~~~~~W~~~~-----~~l~----~~~---~~~~~~~~~~~~-------~~~L~i~~~~~ 57 (505)
|++++|.|.+.-.| .+.|.|.|.. ..+. ... ......+|..+. +.+|.|.+++
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~- 80 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR- 80 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC-
Confidence 89999999975322 4789999841 1110 000 111234566652 3589999999
Q ss_pred CCCCeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 58 ERDPAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 58 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
.+|+|.|+|.+..........+.|.|..
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999998665566677777764
No 260
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.35 E-value=1.9e-07 Score=64.90 Aligned_cols=60 Identities=38% Similarity=0.720 Sum_probs=41.9
Q ss_pred CCeEEEEeecCCCC-CCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 104 GGNVTIFCNPEAAP-KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 104 g~~v~l~C~~~~~p-~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
+..++|.|.+.+.+ .+.+.|+.................+.|.|.++..+|.|.|+|.|.|
T Consensus 15 ~~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 15 GGSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp TEEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 33399999999887 7799999111111111122223355799999999999999999986
No 261
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.34 E-value=2.9e-06 Score=61.33 Aligned_cols=64 Identities=9% Similarity=0.119 Sum_probs=45.0
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~ 69 (505)
|.+|++|+|.|.... +...+.|+|+|........ ...........+.|..++ .+|+|.|+|...
T Consensus 12 V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~---~~~~~~~~~a~f~I~~~~-~~~~G~Y~C~~~ 75 (94)
T cd05711 12 VPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHL---YEKHHGGFQASFPLGPVT-PAHAGTYRCYGS 75 (94)
T ss_pred cCCCCeEEEEEecCC-CCCEEEEEECCCCCCceec---ccccCCeEEEEEEecCCC-cccCEEEEEEEE
Confidence 578999999998854 5578999998875331100 000001123478999999 999999999975
No 262
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.34 E-value=5e-06 Score=62.76 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=45.8
Q ss_pred CCCCCceEEEEEEeccC----CCeEEEEEC----CEE--Cc-C-CCCCC----CCCCcEEE------ECCeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP----DVTYSWFRN----GEL--LN-S-ETLPL----EDQDRYFI------QDNVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p----~~~~~W~~~----~~~--l~-~-~~~~~----~~~~~~~~------~~~~L~i~~~~~~ 58 (505)
+.+|++++|.|.....+ ...|.|++. +.+ +- . ..... ...+|+.. .+.+|.|.+++ .
T Consensus 10 ~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~-~ 88 (115)
T cd05880 10 AVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ-P 88 (115)
T ss_pred EEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC-h
Confidence 35899999999986432 246999862 111 10 0 00000 11234332 24579999999 9
Q ss_pred CCCeEEEEEEEcccC
Q psy14886 59 RDPAMYQCRAKNQLK 73 (505)
Q Consensus 59 ~d~G~Y~C~~~~~~~ 73 (505)
+|+|.|+|.+.|...
T Consensus 89 ~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 89 TDNGTYTCQVKNPPD 103 (115)
T ss_pred hhCEEEEEEEEeCCC
Confidence 999999999997554
No 263
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=98.33 E-value=3.8e-06 Score=59.24 Aligned_cols=78 Identities=23% Similarity=0.373 Sum_probs=53.2
Q ss_pred CCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCC---CcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 389 APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT---EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 389 ~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
+|.++.+......++.|+|++++. .+. .+|.+.|...... .|....... ....+.+.+|.|++.|.|+|
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~--~~~--~~y~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~L~~~~~Y~v~v 74 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPD--DGI--TGYIVGYRVEYREEGSSWKEVNVTP----SSTSYTLTGLKPGTEYEFRV 74 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCC--CCC--CccEEEEEEEEecCCCccEEEEecC----CccEEEEeCcCCCCEEEEEE
Confidence 344566665566699999997322 222 7888888765522 244333322 14678899999999999999
Q ss_pred EEecCCCCC
Q psy14886 466 QAINDVGPG 474 (505)
Q Consensus 466 ~a~n~~G~g 474 (505)
.|.+..|.+
T Consensus 75 ~a~~~~g~~ 83 (83)
T smart00060 75 RAVNGAGEG 83 (83)
T ss_pred EEEcccCCC
Confidence 999987753
No 264
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.31 E-value=5.8e-06 Score=58.13 Aligned_cols=68 Identities=24% Similarity=0.434 Sum_probs=44.1
Q ss_pred ceEEEEEEec-cCCCeEEEEECCEECcCCCCCC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 6 DLTWTCEAFG-VPDVTYSWFRNGELLNSETLPL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 6 ~~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
.+.|.|.+.+ +|.+.|+|+++++++....... ...+......+.|.+.... .++.+.|+|.|.+....
T Consensus 1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~-~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDR-EDDGAPIICRVDHPALK 70 (82)
T ss_pred CEEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcch-hhCCCEEEEEEeChhcC
Confidence 3689999976 5889999999999886321000 0011122223456666655 56667999999986543
No 265
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.31 E-value=4.5e-06 Score=61.25 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=47.1
Q ss_pred CCCCCceEEEEEEecc--CCCeEEEEECCE--ECc---C--CCCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGV--PDVTYSWFRNGE--LLN---S--ETLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~--p~~~~~W~~~~~--~l~---~--~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
|++|++++|.|.+.+. ....+.|+|... ... . .........|+... ..+|.|.+++ .+|+|.|.|.
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~-~~Dsg~Y~C~ 81 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQ-TEDEADYYCQ 81 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCC-hhhCEEEEEE
Confidence 6899999999999764 456799999422 111 0 00011123466552 2469999999 9999999999
Q ss_pred EEc
Q psy14886 68 AKN 70 (505)
Q Consensus 68 ~~~ 70 (505)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 864
No 266
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.31 E-value=4.9e-06 Score=62.09 Aligned_cols=75 Identities=29% Similarity=0.512 Sum_probs=52.0
Q ss_pred CCCeEEEEeecCCCC------CCeEEEEECC-----E-Eec--CCC----------cEEEe----eCCCEEEcCCCCCCC
Q psy14886 103 EGGNVTIFCNPEAAP------KPKFVWKKDG-----N-IIG--SGG----------RRKIF----ENGNLLISPVSRDDS 154 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p------~~~i~W~~~g-----~-~~~--~~~----------~~~~~----~~~~l~i~~v~~~d~ 154 (505)
.|++|+|.|.....+ ...|.|++.. . .+. .+. +.... .+.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999976542 4599999862 1 110 111 11110 123699999999999
Q ss_pred EEEEEEEEcCCCceeeeEEEEEE
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
|.|.|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEE
Confidence 99999999887776777777774
No 267
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.31 E-value=4.7e-06 Score=60.00 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=46.4
Q ss_pred CCCCCceEEEEEEec-cCCCe--EEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 1 MDNQADLTWTCEAFG-VPDVT--YSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~--~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
+.+|+.++|.|.+.| .|... |.|||+++.+......... ..-.....+|.+..-+ .+|...|+|.|.+..
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~-~~~~~~~stlt~~~~r-~D~g~~~sC~A~l~l 85 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNT-KSPVNAPATITITVDR-EDHGANFSCETELDL 85 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecccc-CCCceeEEEEEEecch-hhCCcEEEEEEEecc
Confidence 468999999999976 67665 7999999999743221100 1112233567776544 444448999998644
No 268
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.29 E-value=2.3e-06 Score=64.31 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=48.2
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCE--ECc------CCCC--C-CCCCCcEEEE-----CCeEEEEcCCCCCCCeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGE--LLN------SETL--P-LEDQDRYFIQ-----DNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~--~l~------~~~~--~-~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y 64 (505)
+++|++++|.|.+.+ +...+.|||... .+. .... . .....|+... ..+|.|.+++ .+|+|.|
T Consensus 10 v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~-~~Dsg~Y 87 (110)
T cd05899 10 KGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE-PEDSAVY 87 (110)
T ss_pred EcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC-hhhCEEE
Confidence 578999999999987 678899999532 111 0000 0 1123456542 3579999999 9999999
Q ss_pred EEEEEcc
Q psy14886 65 QCRAKNQ 71 (505)
Q Consensus 65 ~C~~~~~ 71 (505)
.|.+.+.
T Consensus 88 ~Ca~~~~ 94 (110)
T cd05899 88 LCASSLG 94 (110)
T ss_pred EEEeeCC
Confidence 9998754
No 269
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.29 E-value=1.7e-06 Score=64.73 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=49.9
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEECCEE-----CcCC-C----CCCCCCCcEEEE------CCeEEEEcCCCCCCCeE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRNGEL-----LNSE-T----LPLEDQDRYFIQ------DNVLTIRYLNPERDPAM 63 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~~~~-----l~~~-~----~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~ 63 (505)
|.+|++++|.|.+.+. +...+.|+|.... +... . ......+|+.+. ..+|.|.+++ .+|+|.
T Consensus 3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~-~~D~G~ 81 (105)
T cd00099 3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQ-PEDSAV 81 (105)
T ss_pred ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCC-HHHCEE
Confidence 5789999999999875 6788999994321 1000 0 011234455542 2489999999 999999
Q ss_pred EEEEEEcccC
Q psy14886 64 YQCRAKNQLK 73 (505)
Q Consensus 64 Y~C~~~~~~~ 73 (505)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999986553
No 270
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.29 E-value=3.9e-06 Score=62.61 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=46.9
Q ss_pred CCCCCceEEEEEEeccC-CCeEEEEECC--EE---CcCC--CCCCCCCCcEEEE----CCeEEEEcCCCCCCCeEEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVP-DVTYSWFRNG--EL---LNSE--TLPLEDQDRYFIQ----DNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p-~~~~~W~~~~--~~---l~~~--~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
+++|++++|.|.+.+.. ...+.|+|.. +. |... ........|+... ...|.|.+++ .+|+|.|.|.+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~-~~Dsg~Y~Ca~ 90 (106)
T cd04980 12 VSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVE-PEDAAVYYCQQ 90 (106)
T ss_pred ECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCC-hHHCEEEEEEE
Confidence 57899999999997654 5779999842 11 1100 0011123456552 2369999999 99999999998
Q ss_pred Ec
Q psy14886 69 KN 70 (505)
Q Consensus 69 ~~ 70 (505)
.+
T Consensus 91 ~~ 92 (106)
T cd04980 91 YG 92 (106)
T ss_pred eC
Confidence 64
No 271
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.29 E-value=9.3e-06 Score=60.92 Aligned_cols=72 Identities=22% Similarity=0.451 Sum_probs=49.7
Q ss_pred ceEEeeCCCeEEEEeecCCC----CCCeEEEEE---------------CCEEec-C----CCcEEEe-----eCCCEEEc
Q psy14886 97 SETYAGEGGNVTIFCNPEAA----PKPKFVWKK---------------DGNIIG-S----GGRRKIF-----ENGNLLIS 147 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~----p~~~i~W~~---------------~g~~~~-~----~~~~~~~-----~~~~l~i~ 147 (505)
..+.+..|++++|.|..... +..+|.|.+ +|.... . .+|..+. .+.+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 55678899999999997553 235899933 333221 1 1233322 23469999
Q ss_pred CCCCCCCEEEEEEEEcCCCce
Q psy14886 148 PVSRDDSGIYSCTATNVHGMD 168 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~~ 168 (505)
+++.+|.|.|+|.+.|.-+..
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcC
Confidence 999999999999999876543
No 272
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.28 E-value=1e-05 Score=56.85 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=44.2
Q ss_pred eEEEEEEec-cCCCeEEEEECCEECcCCCCCC--CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 7 LTWTCEAFG-VPDVTYSWFRNGELLNSETLPL--EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 7 ~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~~~--~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
++|.|.+.| +|.+.|+|+++|+++....... ...+......+.|.+.... .+|...|+|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~-~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTR-EDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecc-hhCCCEEEEEEECccc
Confidence 689999987 6889999999999886432100 1111122223456666666 6677899999998653
No 273
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.25 E-value=8.9e-06 Score=56.03 Aligned_cols=59 Identities=15% Similarity=0.325 Sum_probs=42.9
Q ss_pred EEEEeecCCC-CCCeEEEEECCEEecCCCcEE-Ee-----eCCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 107 VTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRK-IF-----ENGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 107 v~l~C~~~~~-p~~~i~W~~~g~~~~~~~~~~-~~-----~~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
+.|.|.+.|. |.+.|.|+++++.+....... .. ...+|.|..-..+|+..|+|.|.|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 6899998776 788999999999886532211 11 12247787777778889999999865
No 274
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.25 E-value=6.3e-06 Score=62.02 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=50.6
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCE---Ee-----------cCCCcEEEeeC-----CCEEEcCCCCCCCEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN---II-----------GSGGRRKIFEN-----GNLLISPVSRDDSGIY 157 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~---~~-----------~~~~~~~~~~~-----~~l~i~~v~~~d~G~y 157 (505)
..+.+.+|++++|.|.+.+.+...+.|++... +. ....++.+... ..|.|.+++.+|+|.|
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 45678999999999999877777999998421 10 11234433322 2599999999999999
Q ss_pred EEEEEcCC
Q psy14886 158 SCTATNVH 165 (505)
Q Consensus 158 ~C~~~~~~ 165 (505)
.|.+.+..
T Consensus 86 ~C~~~~~~ 93 (109)
T cd04983 86 FCALSESG 93 (109)
T ss_pred EEEEecCC
Confidence 99998654
No 275
>PHA03376 BARF1; Provisional
Probab=98.25 E-value=1.3e-05 Score=62.98 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=68.6
Q ss_pred eEEeeCCCeEEEEeecCCC---CCCeEEEEECCE----Ee-c------------CCCcEEEee-CC--CEEEcCCCCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAA---PKPKFVWKKDGN----II-G------------SGGRRKIFE-NG--NLLISPVSRDDS 154 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~---p~~~i~W~~~g~----~~-~------------~~~~~~~~~-~~--~l~i~~v~~~d~ 154 (505)
.+....|+.+.|.|.-... +...|.|+|.+. .+ . ...+..+.. .+ +|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 3557789999999986522 345899999431 11 0 011222211 12 589999999999
Q ss_pred EEEEEEEEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeC
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 219 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~ 219 (505)
|.|+|.+..........-.|.+..+-..... ........-...++.|.+.+.|.| .+.|.-+
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~-a~~~dFp~~~~~~i~C~sggfP~P--~~~Wle~ 161 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVH-SERSQFPDFSVLTVTCTVNAFPHP--HVQWLMP 161 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceEEEE-eccccCCCCCeeEEEEecCCcCCc--hheeccc
Confidence 9999999876544444333443222111111 111111124456799996666655 5558754
No 276
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.24 E-value=1.2e-05 Score=55.11 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=51.7
Q ss_pred EeeCCCeEEEEeecCCCCC--CeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAAPK--PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~p~--~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v 176 (505)
.+..|++++|+|.....+. +.|.|...+..... .......+|.+..+...|+|.++|.+....-.....+.+.|
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~---~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ---ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce---eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 5788999999999866544 49999975543221 11123457999999999999999999765444444444444
No 277
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.24 E-value=8.5e-06 Score=57.09 Aligned_cols=67 Identities=19% Similarity=0.411 Sum_probs=44.8
Q ss_pred eEEEEEEec-cCCCeEEEEECCEECcCCCC--CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 7 LTWTCEAFG-VPDVTYSWFRNGELLNSETL--PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 7 ~~l~C~~~~-~p~~~~~W~~~~~~l~~~~~--~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
++|.|.+.| +|...|+|+|||+.+..... .....+......++|.+..-. .++...|+|.+.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~-~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDR-SDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEccc-ccCCCEEEEEEechhcC
Confidence 689999987 78899999999999863211 001112222233577777665 56667899999876533
No 278
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.24 E-value=1.1e-05 Score=60.06 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=51.2
Q ss_pred CCCeEEEEeecCCCC------------CCeEEEEEC--CE---Eec-C----------CCcEEEee------CCCEEEcC
Q psy14886 103 EGGNVTIFCNPEAAP------------KPKFVWKKD--GN---IIG-S----------GGRRKIFE------NGNLLISP 148 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p------------~~~i~W~~~--g~---~~~-~----------~~~~~~~~------~~~l~i~~ 148 (505)
.|++++|.|...... .+.|.|+|. |+ .+. . .+|..+.. +.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999875432 359999983 21 110 0 12443322 34699999
Q ss_pred CCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 149 VSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 149 v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
++.+|+|.|+|.+.+..........|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999776666666666663
No 279
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.23 E-value=8.8e-06 Score=60.03 Aligned_cols=73 Identities=21% Similarity=0.356 Sum_probs=48.5
Q ss_pred CCeEEEEeecCCCC---CCeEEEEECC--EEe---------cC------CCcEEEee------CCCEEEcCCCCCCCEEE
Q psy14886 104 GGNVTIFCNPEAAP---KPKFVWKKDG--NII---------GS------GGRRKIFE------NGNLLISPVSRDDSGIY 157 (505)
Q Consensus 104 g~~v~l~C~~~~~p---~~~i~W~~~g--~~~---------~~------~~~~~~~~------~~~l~i~~v~~~d~G~y 157 (505)
|++++|.|...... ...+.|++.. ..+ .. .+|..+.. +.+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 68899999875332 2378888743 111 00 12333221 13599999999999999
Q ss_pred EEEEEcCCCceeeeEEEEE
Q psy14886 158 SCTATNVHGMDESKGRLIV 176 (505)
Q Consensus 158 ~C~~~~~~g~~~~~~~l~v 176 (505)
+|.+.+..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776666666665
No 280
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.23 E-value=8.9e-06 Score=61.74 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=46.0
Q ss_pred CCCCCceEEEEEEeccC----CCeEEEEECCE------ECc---CCCC----CCCCCCcEEEE------CCeEEEEcCCC
Q psy14886 1 MDNQADLTWTCEAFGVP----DVTYSWFRNGE------LLN---SETL----PLEDQDRYFIQ------DNVLTIRYLNP 57 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p----~~~~~W~~~~~------~l~---~~~~----~~~~~~~~~~~------~~~L~i~~~~~ 57 (505)
+.+|++++|.|.+.... ...+.|++... .+- .... .-...+|+... +.+|.|.+++
T Consensus 10 v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~- 88 (116)
T cd05715 10 AVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQ- 88 (116)
T ss_pred EEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCC-
Confidence 35899999999996432 25699987321 110 0000 00112333332 3579999999
Q ss_pred CCCCeEEEEEEEcccC
Q psy14886 58 ERDPAMYQCRAKNQLK 73 (505)
Q Consensus 58 ~~d~G~Y~C~~~~~~~ 73 (505)
.+|+|.|.|.+.+...
T Consensus 89 ~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 89 FTDNGTYTCDVKNPPD 104 (116)
T ss_pred cccCEEEEEEEEeCCC
Confidence 9999999999986543
No 281
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.23 E-value=8.7e-07 Score=61.52 Aligned_cols=58 Identities=28% Similarity=0.465 Sum_probs=41.4
Q ss_pred ceEEEEEEeccC-CCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 6 DLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 6 ~~~l~C~~~~~p-~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
.++|.|.+.+.+ .+.+.|+ +....... .........++|.|.++. .+|.|.|+|.|.|
T Consensus 17 ~~~l~C~~~~~~~~~~~~W~-~~~~~~~~-----~~~~~~~~~~~L~i~~v~-~~~~g~y~C~a~N 75 (75)
T PF13927_consen 17 SVTLTCSAEGGPPPPSISWY-DSNPSFNS-----NSRGSSSSNSTLTISNVT-RSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSEESSEEEEEE-TEEEEEEE-----EEEEEEEEEEEEEESSCC-GGGTEEEEEEEEE
T ss_pred eEEEEEEEccccCCeEEEEE-ecCCceee-----eeeeccceeeEEEEccCC-HHhCcEEEEEEEC
Confidence 399999998866 8999999 11111100 111223356789999999 9999999999975
No 282
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.22 E-value=7.7e-06 Score=59.63 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=51.1
Q ss_pred eCCCeEEEEeecCC-CCCCeEEEEECCEEec--C-----------C----CcEEEee-CCCEEEcCCCCCCCEEEEEEEE
Q psy14886 102 GEGGNVTIFCNPEA-APKPKFVWKKDGNIIG--S-----------G----GRRKIFE-NGNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 102 ~~g~~v~l~C~~~~-~p~~~i~W~~~g~~~~--~-----------~----~~~~~~~-~~~l~i~~v~~~d~G~y~C~~~ 162 (505)
..|++|+|.|.... .....+.|++....+. . . .+..+.. +.+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36999999998765 4445899998643221 0 0 1222322 2579999999999999999999
Q ss_pred cCCCce-eeeEEEEE
Q psy14886 163 NVHGMD-ESKGRLIV 176 (505)
Q Consensus 163 ~~~g~~-~~~~~l~v 176 (505)
...|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 876554 33355555
No 283
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.21 E-value=1.1e-05 Score=60.30 Aligned_cols=75 Identities=25% Similarity=0.391 Sum_probs=52.7
Q ss_pred CCCeEEEEeecCCCC------CCeEEEEECCE------E--ecC----------CCcEEEee----CCCEEEcCCCCCCC
Q psy14886 103 EGGNVTIFCNPEAAP------KPKFVWKKDGN------I--IGS----------GGRRKIFE----NGNLLISPVSRDDS 154 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p------~~~i~W~~~g~------~--~~~----------~~~~~~~~----~~~l~i~~v~~~d~ 154 (505)
.|++++|.|.....| ...|.|++... . +.. ..+..+.. +.+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999875542 34799998431 1 110 12333321 23699999999999
Q ss_pred EEEEEEEEcCCCceeeeEEEEEE
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
|.|.|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988877777777774
No 284
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.18 E-value=0.024 Score=63.87 Aligned_cols=235 Identities=14% Similarity=0.106 Sum_probs=138.1
Q ss_pred CCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEE--EEcccCceEeeE
Q psy14886 2 DNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR--AKNQLKTRYSSA 79 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~--~~~~~~~~~~~~ 79 (505)
..|+.++|.-...+-....+.|..++..-.. . .+.++.- + ....|.|.-. |.|..+....+.
T Consensus 1710 avn~~V~fs~~lt~GS~vty~W~~gdG~s~~------~------s~p~~tH---t-f~~~G~y~VtVta~N~vss~~~s~ 1773 (2740)
T TIGR00864 1710 AVNALINLSAELAEGSGLQYRWFLEEGDDLE------T------SEPFMSH---S-FPSAGLHLVTMKAFNELGSANASE 1773 (2740)
T ss_pred cCCCeEEEEEEecCCCCcEEEEEECCCCCcc------c------CCCceEE---E-ccCCceEEEEEEEEccccccceeE
Confidence 4578888887666667889999987632110 0 0111110 2 4567888776 457777777777
Q ss_pred EEEEEecCCCccCCCCCc-e-EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEE
Q psy14886 80 QLRVLTLKPSFKKRPLES-E-TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIY 157 (505)
Q Consensus 80 ~l~v~~~~p~~~~~~~~~-~-~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y 157 (505)
.+.|.+.-..+.+..... . ..+..|..+.+.-.+.........|..++..-..+ ... ..+..+.|.|
T Consensus 1774 ~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~g--------k~v---~~Tf~~aG~y 1842 (2740)
T TIGR00864 1774 EVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMG--------KHA---CMTFPDAGTF 1842 (2740)
T ss_pred EEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcccc--------cee---EEecCCCeEE
Confidence 777775322222221111 1 13556778888777544444577887765321111 111 1335678988
Q ss_pred EEE--EEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCe
Q psy14886 158 SCT--ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235 (505)
Q Consensus 158 ~C~--~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 235 (505)
+.. |.|..+....+..+.|+++............+..|+.++|.+....+. .+.+.|...+.....
T Consensus 1843 tV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS--~Vtf~w~fGdgs~~~---------- 1910 (2740)
T TIGR00864 1843 AIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGS--AVNFRLQIGGAAPEV---------- 1910 (2740)
T ss_pred EEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCC--ceEEEEEeCCCCcee----------
Confidence 765 568888777777888877765554445556678899999999887665 678889775322110
Q ss_pred eeecCCeEEEecCCCCCCEEEEEEEEecCCcEEEEEEEEEcC
Q psy14886 236 INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277 (505)
Q Consensus 236 ~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~ 277 (505)
...+. ........-..+.....|.|..+.......+.|..
T Consensus 1911 -~t~~~-t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle 1950 (2740)
T TIGR00864 1911 -LQPGP-RFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLE 1950 (2740)
T ss_pred -ecCCC-eEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEE
Confidence 00011 11122223344555667788888877777777644
No 285
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.16 E-value=1.7e-05 Score=59.31 Aligned_cols=75 Identities=24% Similarity=0.380 Sum_probs=52.2
Q ss_pred CCCeEEEEeecCCCC----------CCeEEEEEC--CEEec----C----------CCcEEEe------eCCCEEEcCCC
Q psy14886 103 EGGNVTIFCNPEAAP----------KPKFVWKKD--GNIIG----S----------GGRRKIF------ENGNLLISPVS 150 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p----------~~~i~W~~~--g~~~~----~----------~~~~~~~------~~~~l~i~~v~ 150 (505)
.|++++|.|.....+ ...|.|++. ++... . .+|..+. .+.+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999975543 257999984 22110 0 1233331 12359999999
Q ss_pred CCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 151 RDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
.+|+|.|.|.+.......+..+.|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999999877777777777774
No 286
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.12 E-value=1.8e-05 Score=58.17 Aligned_cols=72 Identities=25% Similarity=0.387 Sum_probs=48.9
Q ss_pred CeEEEEeecCCCC---CCeEEEEECCE----Ee-----------cC--CCcEEEe----eCCCEEEcCCCCCCCEEEEEE
Q psy14886 105 GNVTIFCNPEAAP---KPKFVWKKDGN----II-----------GS--GGRRKIF----ENGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 105 ~~v~l~C~~~~~p---~~~i~W~~~g~----~~-----------~~--~~~~~~~----~~~~l~i~~v~~~d~G~y~C~ 160 (505)
++|+|.|.....+ ...|.|+|... .+ .. ..+..+. .+.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999976653 34799999432 11 01 1222222 234699999999999999999
Q ss_pred EEc-CCCceeeeEEEEE
Q psy14886 161 ATN-VHGMDESKGRLIV 176 (505)
Q Consensus 161 ~~~-~~g~~~~~~~l~v 176 (505)
+.. ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5677777777766
No 287
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.11 E-value=1.7e-05 Score=59.65 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=48.4
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECC--EEec----------------CCCcEEEee----CCCEEEcCCCCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDG--NIIG----------------SGGRRKIFE----NGNLLISPVSRDDS 154 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g--~~~~----------------~~~~~~~~~----~~~l~i~~v~~~d~ 154 (505)
..+.+.+|++++|.|.+.+ +...+.|++.. +... ...++.... ...|.|.+++.+|+
T Consensus 6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Ds 84 (110)
T cd05899 6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDS 84 (110)
T ss_pred CceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhC
Confidence 4567899999999999887 66789999842 1110 012333322 12599999999999
Q ss_pred EEEEEEEEcC
Q psy14886 155 GIYSCTATNV 164 (505)
Q Consensus 155 G~y~C~~~~~ 164 (505)
|.|.|.+.+.
T Consensus 85 g~Y~Ca~~~~ 94 (110)
T cd05899 85 AVYLCASSLG 94 (110)
T ss_pred EEEEEEeeCC
Confidence 9999999764
No 288
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.11 E-value=9.2e-06 Score=60.65 Aligned_cols=67 Identities=25% Similarity=0.420 Sum_probs=47.8
Q ss_pred EeeCCCeEEEEeecCCC-CCCeEEEEECCE---E--e------------cCCCcEEEeeC-----CCEEEcCCCCCCCEE
Q psy14886 100 YAGEGGNVTIFCNPEAA-PKPKFVWKKDGN---I--I------------GSGGRRKIFEN-----GNLLISPVSRDDSGI 156 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~-p~~~i~W~~~g~---~--~------------~~~~~~~~~~~-----~~l~i~~v~~~d~G~ 156 (505)
.+.+|++++|.|.+.+. +...+.|++... + + ....+...... .+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999998876 566899998422 1 1 01123333222 259999999999999
Q ss_pred EEEEEEcCCC
Q psy14886 157 YSCTATNVHG 166 (505)
Q Consensus 157 y~C~~~~~~g 166 (505)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
No 289
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.11 E-value=2e-05 Score=54.11 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=50.8
Q ss_pred CCCCceEEEEEEecc--CCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeE
Q psy14886 2 DNQADLTWTCEAFGV--PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSA 79 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~--p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~ 79 (505)
-.|++++|+|..... |.+.|+|...+..... .......+|.+..++ ..|+|..+|.+..........+
T Consensus 12 L~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~---------~~~~~~ktL~~~qv~-~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 12 LSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ---------ILNQDKKTLNLVQLG-PNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred ecCCcEEEEEecCCCCCCCccEEEeCCCCccce---------eccCCccEEEeceeC-cccCCEEEEEEEECceEEEEEe
Confidence 479999999999543 3459999986543221 011245789999999 9999999999975443344455
Q ss_pred EEEEE
Q psy14886 80 QLRVL 84 (505)
Q Consensus 80 ~l~v~ 84 (505)
.+.|.
T Consensus 82 ~V~Vl 86 (88)
T cd07694 82 DIKVL 86 (88)
T ss_pred eEEEE
Confidence 55554
No 290
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.10 E-value=2.7e-05 Score=58.06 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=47.2
Q ss_pred ceEEeeCCCeEEEEeecCCCC-CCeEEEEECC--EE---ec---------CCCcEEEeeCC---CEEEcCCCCCCCEEEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP-KPKFVWKKDG--NI---IG---------SGGRRKIFENG---NLLISPVSRDDSGIYS 158 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p-~~~i~W~~~g--~~---~~---------~~~~~~~~~~~---~l~i~~v~~~d~G~y~ 158 (505)
..+.+.+|++++|.|.+.+.. ...+.|++.. +. +. ...++...... .|.|.+++.+|+|.|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~ 87 (106)
T cd04980 8 ATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYY 87 (106)
T ss_pred CcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEE
Confidence 446789999999999987654 5689999732 11 11 01233332222 4999999999999999
Q ss_pred EEEEcC
Q psy14886 159 CTATNV 164 (505)
Q Consensus 159 C~~~~~ 164 (505)
|.+.+.
T Consensus 88 Ca~~~~ 93 (106)
T cd04980 88 CQQYGT 93 (106)
T ss_pred EEEeCC
Confidence 998653
No 291
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.08 E-value=1e-05 Score=61.56 Aligned_cols=69 Identities=23% Similarity=0.485 Sum_probs=47.7
Q ss_pred CCCCCceEEEEEEec--cCCCeEEEEEC--CEEC------cCCCC----CCCCCCcEEEE------CCeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFG--VPDVTYSWFRN--GELL------NSETL----PLEDQDRYFIQ------DNVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~--~p~~~~~W~~~--~~~l------~~~~~----~~~~~~~~~~~------~~~L~i~~~~~~~d 60 (505)
+++|++++|.|.+.+ .+...+.|+|. +... ..... .....+|+.+. ..+|.|.+++ .+|
T Consensus 10 ~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~-~~D 88 (116)
T cd04982 10 REESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE-KED 88 (116)
T ss_pred eCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC-HHH
Confidence 468999999999977 56788999994 2211 00000 00123566542 2479999999 999
Q ss_pred CeEEEEEEEc
Q psy14886 61 PAMYQCRAKN 70 (505)
Q Consensus 61 ~G~Y~C~~~~ 70 (505)
+|.|.|.+..
T Consensus 89 sg~Y~C~~~~ 98 (116)
T cd04982 89 SATYYCAYWE 98 (116)
T ss_pred CEEEEEEEec
Confidence 9999999863
No 292
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.07 E-value=7.7e-05 Score=53.84 Aligned_cols=86 Identities=31% Similarity=0.483 Sum_probs=61.7
Q ss_pred CCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEE
Q psy14886 280 GLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359 (505)
Q Consensus 280 ~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~ 359 (505)
.+|.++.+......++.++|.++......+..|.+.+.......|....... .....+.+.+ |.|++.|.|
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~--------~~~~~~~i~~-l~p~~~Y~~ 72 (93)
T cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTP--------GSETSYTLTG-LKPGTEYEF 72 (93)
T ss_pred cCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEeeccC--------CcccEEEEcc-ccCCCEEEE
Confidence 4556677777778999999998765445677899999877655666553321 0223444554 999999999
Q ss_pred EEEEEcCCCcCCCCC
Q psy14886 360 KVIAGNELGYGEPSS 374 (505)
Q Consensus 360 ~v~a~n~~G~~~~s~ 374 (505)
++.|.+..|.+.++.
T Consensus 73 ~v~a~~~~~~~~~s~ 87 (93)
T cd00063 73 RVRAVNGGGESPPSE 87 (93)
T ss_pred EEEEECCCccCCCcc
Confidence 999999988776554
No 293
>KOG4258|consensus
Probab=98.05 E-value=4.7e-05 Score=73.80 Aligned_cols=141 Identities=15% Similarity=0.254 Sum_probs=93.8
Q ss_pred eEEEEEeCCeEEEEeecCCCCC-CCCceEEEEEEeCC--------------CCCeEEeeeccccceeeeecCceeeEEee
Q psy14886 285 VQVVEVHKTSATIQWTDGATNG-RPITHYKIIARTNW--------------NSTWFNVSEHVIGKEVDRYTGRKEASIEN 349 (505)
Q Consensus 285 ~~~~~~~~~~v~l~w~~~~~~~-~~i~~y~v~~~~~~--------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (505)
+.......+++.++|..-...+ ....+|.+.|+..+ ...|........ ..... ..........
T Consensus 494 ~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~-~~~p~-~~~~~~~~l~ 571 (1025)
T KOG4258|consen 494 FSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPP-DLIPN-DGTHPGFLLD 571 (1025)
T ss_pred eeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCC-cCCCc-cccccceehh
Confidence 4455667789999998543222 33678998887653 345665543332 11111 1223234444
Q ss_pred eccCCceeEEEEEEEcC--CCcCC-CCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEE
Q psy14886 350 VLVPWSTYEFKVIAGNE--LGYGE-PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFW 426 (505)
Q Consensus 350 ~L~~~~~y~~~v~a~n~--~G~~~-~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~ 426 (505)
+|.|.+.|.+-|++... .+... .-+....++|.+..|. ||..+-....+++.|.|.|+| |...||.+++|.|.|
T Consensus 572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~snsSsqi~l~W~p--P~~pNG~lt~Ylv~w 648 (1025)
T KOG4258|consen 572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKSNSSSQILLKWKP--PSQPNGNLTHYLVVW 648 (1025)
T ss_pred cCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-CcchhhhccCcchheeEEecC--CCCCCCceeEEEEEE
Confidence 59999999999997632 22221 1112236788888775 787777777888899999998 788999999999999
Q ss_pred EEcC
Q psy14886 427 RKKN 430 (505)
Q Consensus 427 ~~~~ 430 (505)
+..+
T Consensus 649 er~~ 652 (1025)
T KOG4258|consen 649 ERQA 652 (1025)
T ss_pred Eecc
Confidence 9865
No 294
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.03 E-value=1.5e-05 Score=60.59 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=47.6
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEEC--CEECc-----CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEE
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRN--GELLN-----SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~--~~~l~-----~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C 66 (505)
+.+|++++|.|..... ....+.|+|. +..+. ........++|+.+. ..+|.|.+++ .+|+|.|.|
T Consensus 11 ~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~-~~Dsg~Y~C 89 (116)
T cd07706 11 VQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQ-LEDSAKYFC 89 (116)
T ss_pred EcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCC-HHHCEEEEE
Confidence 4789999999998753 4577999993 21110 011111234677653 2479999999 999999999
Q ss_pred EEEc
Q psy14886 67 RAKN 70 (505)
Q Consensus 67 ~~~~ 70 (505)
.+..
T Consensus 90 ~~~~ 93 (116)
T cd07706 90 ALST 93 (116)
T ss_pred EEEC
Confidence 9874
No 295
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.03 E-value=5.5e-05 Score=54.38 Aligned_cols=75 Identities=13% Similarity=0.215 Sum_probs=48.1
Q ss_pred CceEEEEEEecc-CCCeEEEEECCE----ECc------CCCCCCCCCCcEEEE-----CCeEEEEcCCCCCCCeEEEEEE
Q psy14886 5 ADLTWTCEAFGV-PDVTYSWFRNGE----LLN------SETLPLEDQDRYFIQ-----DNVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 5 ~~~~l~C~~~~~-p~~~~~W~~~~~----~l~------~~~~~~~~~~~~~~~-----~~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
+.++|.|..... ...+++|.|-.. .+. .........+|+... +.+|.|.+++ .+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt-~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNAT-EEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCC-cccCEEEEEEE
Confidence 468999999642 357899999421 111 001111233555543 4799999999 99999999998
Q ss_pred Ec-ccCceEeeEE
Q psy14886 69 KN-QLKTRYSSAQ 80 (505)
Q Consensus 69 ~~-~~~~~~~~~~ 80 (505)
.. +.|.....+.
T Consensus 80 ~t~P~g~~~~~i~ 92 (96)
T cd05889 80 VTYPQGSWEKVIE 92 (96)
T ss_pred EeCCCCCeEEEEE
Confidence 63 4555544443
No 296
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.03 E-value=9.2e-06 Score=61.77 Aligned_cols=70 Identities=20% Similarity=0.372 Sum_probs=46.4
Q ss_pred CCCCCceEEEEEEe-ccCCCeEEEEECCE-----ECc---CC----CCCCCCCCcEEE--EC----CeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAF-GVPDVTYSWFRNGE-----LLN---SE----TLPLEDQDRYFI--QD----NVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p~~~~~W~~~~~-----~l~---~~----~~~~~~~~~~~~--~~----~~L~i~~~~~~~d~ 61 (505)
+.+|++++|.|... ......+.|++... .+. .. .......+++.. .. .+|.|.+++ .+|+
T Consensus 13 ~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~-~~Ds 91 (114)
T PF07686_consen 13 VQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ-PSDS 91 (114)
T ss_dssp EETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES-GGGE
T ss_pred EecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC-cCcC
Confidence 36899999999998 44567999999322 111 00 001112233332 22 379999999 9999
Q ss_pred eEEEEEEEcc
Q psy14886 62 AMYQCRAKNQ 71 (505)
Q Consensus 62 G~Y~C~~~~~ 71 (505)
|.|.|.+...
T Consensus 92 G~Y~C~v~~~ 101 (114)
T PF07686_consen 92 GTYFCQVSTS 101 (114)
T ss_dssp EEEEEEEEES
T ss_pred EEEEEEEEEC
Confidence 9999999865
No 297
>KOG4367|consensus
Probab=98.00 E-value=8.8e-06 Score=71.90 Aligned_cols=85 Identities=15% Similarity=0.269 Sum_probs=70.7
Q ss_pred eccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCC
Q psy14886 396 GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 475 (505)
Q Consensus 396 ~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~ 475 (505)
......+++|.|+. |.....+..+|.|+.-.-+++.+..+.+. ..++.++.+|..++.|.-||.|+|..|.|+
T Consensus 448 c~t~nns~t~~wkq--p~~~~~~~dg~~leld~g~~g~frevy~g-----~etmctvdglhfns~y~arvka~n~tg~s~ 520 (699)
T KOG4367|consen 448 CCTHNNSATLSWKQ--PPLSTVPADGYILELDDGNGGQFREVYVG-----KETMCTVDGLHFNSTYNARVKAFNKTGVSP 520 (699)
T ss_pred hhccCCceEEEeec--CCCCCCCCcceEEEeecCCCCceeEEEec-----CceeEEecceecchhHHHHHHHhhccCCCc
Confidence 35567899999997 34566788999999988777877766543 357899999999999999999999999999
Q ss_pred CCceEEEeecce
Q psy14886 476 ESEVVTIWHDPL 487 (505)
Q Consensus 476 ~s~~~~~~t~p~ 487 (505)
+|+.+..+|.-.
T Consensus 521 ys~tl~lqts~v 532 (699)
T KOG4367|consen 521 YSKTLVLQTSEV 532 (699)
T ss_pred ccceeEeeecce
Confidence 999998877533
No 298
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.00 E-value=7.1e-05 Score=54.32 Aligned_cols=71 Identities=25% Similarity=0.454 Sum_probs=48.1
Q ss_pred eEEEEeecCCC-CC---CeEEEEECC--E--Ee--cC-----------CCcEEEe----eCCCEEEcCCCCCCCEEEEEE
Q psy14886 106 NVTIFCNPEAA-PK---PKFVWKKDG--N--II--GS-----------GGRRKIF----ENGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 106 ~v~l~C~~~~~-p~---~~i~W~~~g--~--~~--~~-----------~~~~~~~----~~~~l~i~~v~~~d~G~y~C~ 160 (505)
+++|.|..... |. .+|.|.+.. . .+ .. .+|.... .+.+|.|.+++.+|.|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 57899987632 21 279998731 1 11 00 1222222 135799999999999999999
Q ss_pred EEc-CCCceeeeEEEEE
Q psy14886 161 ATN-VHGMDESKGRLIV 176 (505)
Q Consensus 161 ~~~-~~g~~~~~~~l~v 176 (505)
+.+ +.|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 998 6787777788876
No 299
>KOG0613|consensus
Probab=98.00 E-value=5.1e-05 Score=77.31 Aligned_cols=405 Identities=13% Similarity=0.066 Sum_probs=213.8
Q ss_pred eEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEe---------------cCCCcc-CCCCCceEEeeCCCeEEEEee
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT---------------LKPSFK-KRPLESETYAGEGGNVTIFCN 112 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~---------------~~p~~~-~~~~~~~~~v~~g~~v~l~C~ 112 (505)
+..+.+.. ..+.+.|+|...+..+.....+...+.. .++... .......+....+..+++.|.
T Consensus 279 t~~i~~~~-~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~ 357 (1205)
T KOG0613|consen 279 TKTIQNDG-PEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA 357 (1205)
T ss_pred cccccccC-CccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence 56667777 7788888888877666554443333221 111111 111123345667788999999
Q ss_pred cCCCCCC-eEEEEECCEEecCCCcEEEe-----eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeCCeeeee-
Q psy14886 113 PEAAPKP-KFVWKKDGNIIGSGGRRKIF-----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ- 185 (505)
Q Consensus 113 ~~~~p~~-~i~W~~~g~~~~~~~~~~~~-----~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~p~~~~~- 185 (505)
..+.+.+ .+.|++++.....+..-... ....+.+..+...+.+.|.|.|.|..|........++...+.....
T Consensus 358 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~ 437 (1205)
T KOG0613|consen 358 LSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPP 437 (1205)
T ss_pred ccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCc
Confidence 9988777 49999977665432211111 1234777888889999999999999887766655555442221110
Q ss_pred ---CCCceEEEe--eccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEE
Q psy14886 186 ---LPPKITIAA--HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVV 260 (505)
Q Consensus 186 ---~~~~~~~~~--g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~ 260 (505)
......... -+.+.+.|.....+.+....+|++++........ ........+|.+......+.+.|.-..
T Consensus 438 ~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~-----~l~r~~~tslLlk~~~~~~~A~~~~a~ 512 (1205)
T KOG0613|consen 438 KFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSV-----TLTRDVLTSLLLKVASLSDGAQYTRAL 512 (1205)
T ss_pred cccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccc-----cccccchhhheeeccCCCccchhhhhh
Confidence 011122222 3678889988888877444566665544432110 111111234555556667777776554
Q ss_pred EecCCcEEEEEEEE-EcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCC-ceEEEEEEeCCCCCeEEeeeccccceeee
Q psy14886 261 KSTVGKISTKTTVI-VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI-THYKIIARTNWNSTWFNVSEHVIGKEVDR 338 (505)
Q Consensus 261 ~n~~g~~~~~~~l~-v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i-~~y~v~~~~~~~~~w~~~~~~~~~~~~~~ 338 (505)
....|....+.... +...+.++..+...........|.|.+-....+.+ .+|....+ ..+.|.....
T Consensus 513 ~~~~~k~~~~~~~~l~~~~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~--qlg~~~~~~~--------- 581 (1205)
T KOG0613|consen 513 RTLQGKPVPSLDRKLPAAKSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATR--QLGVWRVPES--------- 581 (1205)
T ss_pred hccCCCCCCcccccccccccCCcccccccccCCCCcccccCCCcccccccchhhhhhhh--hccCCccccc---------
Confidence 44333322111111 11111112111111223344555555432211111 12222211 1122222111
Q ss_pred ecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCC-CCCCCCCceeeeeccccccEEEEEEeCCccccCC
Q psy14886 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA-DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNA 417 (505)
Q Consensus 339 ~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~-~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~ 417 (505)
..+ .+..+.+ ..++..|.+++.+.+..|.+.++.........+ ..+...|..-.............|.. .....-.
T Consensus 582 r~g-tt~t~~~-~~p~~~~~~t~~~k~~~gE~~ps~~~~t~k~~D~~q~~~~~~~~~~~ks~~~~~k~s~l~-~l~k~~~ 658 (1205)
T KOG0613|consen 582 RPG-TTETIGS-ILPGHEYHVTIKAKNELGESRPSSKSTTLKWQDPSQLKRRPVSEPSYKSPDSSQKPSKLV-GLSKMDL 658 (1205)
T ss_pred CCC-ccccccc-ccccccceeehhhhhcccccCCCCCCccccccccccccccccCCccccccccccchhccc-chhhccc
Confidence 112 4555666 899999999999999999998885321222111 11111111111223445677788877 3445555
Q ss_pred CCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCC
Q psy14886 418 PNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477 (505)
Q Consensus 418 ~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s 477 (505)
+...|.......+ ...|....-.. ..-...+..+.+.+.|..-..+.+..+..+..
T Consensus 659 ~a~~~~~~~~~vd~~~K~kv~~~~~----e~d~~i~~~~~t~si~~p~k~~e~~~~~~~~~ 715 (1205)
T KOG0613|consen 659 PANLESQVKPTVVSSPKKKVKKKKQ----EKDLEILAKKGTTSIVEPEKPPESEAATPAEV 715 (1205)
T ss_pred cccceeeeeccccCCcccccccccc----ccchhhhccCCCCcccccccCCccccCCcccc
Confidence 6666766665544 44444322222 12234566777888899999999988886553
No 300
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.99 E-value=4.3e-05 Score=57.65 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=47.6
Q ss_pred CceEEeeCCCeEEEEeecCCCC----CCeEEEEEC----CEE--ec---------CC----CcEEEe-----eCCCEEEc
Q psy14886 96 ESETYAGEGGNVTIFCNPEAAP----KPKFVWKKD----GNI--IG---------SG----GRRKIF-----ENGNLLIS 147 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~~p----~~~i~W~~~----g~~--~~---------~~----~~~~~~-----~~~~l~i~ 147 (505)
+..+.+.+|++++|.|.....+ ...|.|++. +.. +. .. .+..+. .+.+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 3567789999999999865332 236999751 211 10 01 122111 12359999
Q ss_pred CCCCCCCEEEEEEEEcCCCc
Q psy14886 148 PVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g~ 167 (505)
+++.+|+|.|.|.+.+..+.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCChhhCEEEEEEEEeCCCC
Confidence 99999999999999976553
No 301
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.99 E-value=5.5e-05 Score=55.42 Aligned_cols=64 Identities=22% Similarity=0.280 Sum_probs=44.3
Q ss_pred EeeCCCeEEEEeecCCC--CCCeEEEEECC--EEe---c---------CCCcEEEeeCC---CEEEcCCCCCCCEEEEEE
Q psy14886 100 YAGEGGNVTIFCNPEAA--PKPKFVWKKDG--NII---G---------SGGRRKIFENG---NLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~--p~~~i~W~~~g--~~~---~---------~~~~~~~~~~~---~l~i~~v~~~d~G~y~C~ 160 (505)
.+.+|++++|.|...+. ....+.|++.. ... . ...++....++ .|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998664 44579998832 111 0 01233332222 499999999999999999
Q ss_pred EEc
Q psy14886 161 ATN 163 (505)
Q Consensus 161 ~~~ 163 (505)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 875
No 302
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.98 E-value=7.7e-05 Score=53.58 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=49.4
Q ss_pred CeEEEEeecCCCC-CCeEEEEECC----EEec--C-----------CCcEEEe----eCCCEEEcCCCCCCCEEEEEEEE
Q psy14886 105 GNVTIFCNPEAAP-KPKFVWKKDG----NIIG--S-----------GGRRKIF----ENGNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 105 ~~v~l~C~~~~~p-~~~i~W~~~g----~~~~--~-----------~~~~~~~----~~~~l~i~~v~~~d~G~y~C~~~ 162 (505)
++++|.|.....+ ..+|.|.|.. ..+. . .+|..+. .+.+|.|.+++.+|.|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 3689999976433 3489998832 1221 0 1233331 24579999999999999999975
Q ss_pred -cCCCceeeeEEEEE
Q psy14886 163 -NVHGMDESKGRLIV 176 (505)
Q Consensus 163 -~~~g~~~~~~~l~v 176 (505)
.+.|.......|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 57788888888776
No 303
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.96 E-value=2.9e-05 Score=57.00 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=47.6
Q ss_pred CCCCCceEEEEEEec-cCCCeEEEEECCEE-----Cc-CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFG-VPDVTYSWFRNGEL-----LN-SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAMYQCR 67 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~~~~~W~~~~~~-----l~-~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~Y~C~ 67 (505)
+.+|++++|.|.... .....+.|+|.... +. .........+|+.+. ..+|.|.+++ .+|+|.|.|.
T Consensus 4 ~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~-~~DsG~Y~C~ 82 (98)
T cd05716 4 GELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLR-KEDAGWYWCG 82 (98)
T ss_pred EEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCC-HHHCEEEEEE
Confidence 468999999999865 35678999995421 11 001111234566552 2479999999 9999999998
Q ss_pred EEcc
Q psy14886 68 AKNQ 71 (505)
Q Consensus 68 ~~~~ 71 (505)
+...
T Consensus 83 ~~~~ 86 (98)
T cd05716 83 VGDD 86 (98)
T ss_pred cccC
Confidence 8753
No 304
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.96 E-value=2.3e-05 Score=57.97 Aligned_cols=68 Identities=15% Similarity=0.281 Sum_probs=45.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECC----EEC---c---CC-CC----CCCCCCcEEEE----CCeEEEEcCCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNG----ELL---N---SE-TL----PLEDQDRYFIQ----DNVLTIRYLNPERDP 61 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~----~~l---~---~~-~~----~~~~~~~~~~~----~~~L~i~~~~~~~d~ 61 (505)
|++|++++|.|.+.......+.|+|.. ..+ . .. .. ......|+... ..+|.|.+++ .+|+
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~-~sDs 81 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQ-KENE 81 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCC-HHHC
Confidence 579999999999865445679999943 211 1 00 00 00123456542 2479999999 9999
Q ss_pred eEEEEEEE
Q psy14886 62 AMYQCRAK 69 (505)
Q Consensus 62 G~Y~C~~~ 69 (505)
|.|.|.+.
T Consensus 82 gtY~Ca~~ 89 (104)
T cd05720 82 GYYFCSVA 89 (104)
T ss_pred EEEEEEEc
Confidence 99999875
No 305
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.95 E-value=3.3e-05 Score=55.81 Aligned_cols=64 Identities=20% Similarity=0.348 Sum_probs=45.0
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCC---CcEEEeeCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG---GRRKIFENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~---~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
..+.+|++|+|.|.... ....+.|+|+|...... ..........|.|.+++.+|+|.|.|....
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 45889999999998765 44589999988643210 000001122589999999999999999753
No 306
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.95 E-value=0.0001 Score=58.62 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=57.9
Q ss_pred eEEeeCCCeEEEEeecC-CCCCCeEEEEECCEEec----------C--CCcEEEe----eCCCEEEcCCCCCCCEEEEEE
Q psy14886 98 ETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIG----------S--GGRRKIF----ENGNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~~~~----------~--~~~~~~~----~~~~l~i~~v~~~d~G~y~C~ 160 (505)
...+.+|++++|.|... +...+.+.|+|..+.+. + .++.... .+.+|.|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 45688999999999974 54567999999643221 1 1233221 234699999999999999999
Q ss_pred EEc-CCC-ceeeeEEEEEEeC
Q psy14886 161 ATN-VHG-MDESKGRLIVLHG 179 (505)
Q Consensus 161 ~~~-~~g-~~~~~~~l~v~~~ 179 (505)
..- +.| ..+....|.|...
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCCCCceeEEEEEEEch
Confidence 864 456 6666788888653
No 307
>KOG4152|consensus
Probab=97.95 E-value=2.8e-05 Score=70.76 Aligned_cols=127 Identities=27% Similarity=0.303 Sum_probs=84.0
Q ss_pred eccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEc
Q psy14886 350 VLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK 429 (505)
Q Consensus 350 ~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~ 429 (505)
+|.++..|.|||.|.|..|.++++... .+.|-...-|.+|+.+++. .+..-+.+.|+| |...+.|.|+.|.....-.
T Consensus 653 ~lv~Gq~yrfrV~aIng~G~gp~s~i~-~~kTc~pG~P~apS~~ri~-k~~eGi~l~wep-pt~p~sg~Iieys~ylAi~ 729 (830)
T KOG4152|consen 653 SLVTGQAYRFRVTAINGKGPGPASTIL-KLKTCAPGKPTAPSGARIK-KTIEGISLVWEP-PTKPGSGTIIEYSPYLAII 729 (830)
T ss_pred ccccccceeeeeeeeeccCCCchhhhe-eeeeccCCCCCCccccccc-ccccceeecccC-CCCCCCcceEEeehhhHhh
Confidence 388999999999999999999998876 5666555445678777775 456679999998 4555577787776533221
Q ss_pred C--------CCCcEEEEeee-------cCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEE
Q psy14886 430 N--------DTEFQSETLKE-------YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482 (505)
Q Consensus 430 ~--------~~~~~~~~~~~-------~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~ 482 (505)
. +-.+....+.. .++.......++. +-.-.|||.|.|+.|.|+..+..-.
T Consensus 730 tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~---~paivfri~aknekGyGpatqvrwl 794 (830)
T KOG4152|consen 730 TQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITT---GPAIVFRIVAKNEKGYGPATQVRWL 794 (830)
T ss_pred hhhhccCccccceeeeecccceeeEEecccceeecccccc---CcceEEEEEecCCCCCCcceEEEec
Confidence 1 11122222111 1111122223333 6778999999999999998766543
No 308
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.95 E-value=2.6e-05 Score=56.90 Aligned_cols=65 Identities=28% Similarity=0.466 Sum_probs=46.7
Q ss_pred eCCCeEEEEeecCCC-C-CCeEEEEECCEEecCCCc---EEEeeCCC------EEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 102 GEGGNVTIFCNPEAA-P-KPKFVWKKDGNIIGSGGR---RKIFENGN------LLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 102 ~~g~~v~l~C~~~~~-p-~~~i~W~~~g~~~~~~~~---~~~~~~~~------l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
..|+.++|.|.+.|. | ...|+|+++|..+..... .....+++ |.+......+.+.|+|.|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 368899999999998 5 469999999998865432 11222333 55555555699999999987654
No 309
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.94 E-value=3.6e-05 Score=55.44 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=45.7
Q ss_pred eeCCCeEEEEeecCCC-CCCe--EEEEECCEEecCCCcEE-----EeeCCCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 101 AGEGGNVTIFCNPEAA-PKPK--FVWKKDGNIIGSGGRRK-----IFENGNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~-p~~~--i~W~~~g~~~~~~~~~~-----~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
+.+|+.++|.|.+.|. |.+. |.|++++..+....... .....+|.+..-..+|...|+|.|.+..+.
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 6799999999998775 6665 79999999886422111 111224666655555555999999876543
No 310
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.93 E-value=0.00014 Score=54.10 Aligned_cols=68 Identities=25% Similarity=0.571 Sum_probs=44.5
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCCCC---CCCCcEEEECCeEEEEcCCCCCCCe-EEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETLPL---EDQDRYFIQDNVLTIRYLNPERDPA-MYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~~~---~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~~~~~~ 72 (505)
..|+.++|.|.+.| +| ...++|+|||+.+....... .+.+.|.. .+.|.+..- ..|.| .|+|.+.+..
T Consensus 19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~-~S~L~~~~~--~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNV-TSTVQVKLT--EDDVHSQVTCEVQHRT 92 (111)
T ss_pred CCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEE-EEEEEEECc--cccccCceEEEEEeCC
Confidence 46788999999988 56 58999999999986421111 11112322 345666653 35555 5999998754
No 311
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.92 E-value=0.0069 Score=54.24 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=90.2
Q ss_pred eEEEEcCCCCCCCeEEEEEEEcccCce--EeeEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-C--CCeEEE
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQLKTR--YSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P--KPKFVW 123 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p--~~~i~W 123 (505)
.|.|.++. ..|+|.|.-...+..... ...+.+.+...+|.+.+.+.+ +.+|+...-.|.+..+ | ...+.|
T Consensus 208 ~v~I~svD-~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P----VL~Ge~YkAtC~vAnYYPP~SvrlrW 282 (490)
T PHA03271 208 GVEIRNVD-YADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP----VLSGENYKASCIVRHFYPPGSVYVSW 282 (490)
T ss_pred eEEEEEee-cccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc----cccCCCceEEEEeeeecCCCceEEEE
Confidence 69999999 999997755555433332 223555666667777776643 6799999999998776 4 348999
Q ss_pred EECCEEecCCCcEEE----eeC-------CCEEEcCCCCCCCEEEEEEEEcCCCceeee----EEEEEEeCCeeeeeCCC
Q psy14886 124 KKDGNIIGSGGRRKI----FEN-------GNLLISPVSRDDSGIYSCTATNVHGMDESK----GRLIVLHGPSYYEQLPP 188 (505)
Q Consensus 124 ~~~g~~~~~~~~~~~----~~~-------~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~----~~l~v~~~p~~~~~~~~ 188 (505)
+.||.++........ ... ++|.+.+......=..+|.+.=..+..... +.-.|..+|.+
T Consensus 283 f~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~I------ 356 (490)
T PHA03271 283 RQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRI------ 356 (490)
T ss_pred EeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeE------
Confidence 999988753221111 111 123333332233337899876322211111 12222223322
Q ss_pred ceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
.+....| ...|.+.--|. .+++.|..+...
T Consensus 357 Sv~FedG---~AVCtA~CVP~-gV~lrWlVgD~p 386 (490)
T PHA03271 357 SLAFKDG---YAICTIECVPS-GITVRWLVHDEP 386 (490)
T ss_pred EEEEeCC---EEEEeccccCC-CcEEEEEecCCC
Confidence 2223333 34576666654 678889765543
No 312
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.92 E-value=0.0076 Score=54.98 Aligned_cols=158 Identities=19% Similarity=0.252 Sum_probs=91.5
Q ss_pred eEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEe-cCCCccCCCCCceEEeeCCCeEEEEeecCCC-C--CCeEEEE
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT-LKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P--KPKFVWK 124 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~-~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p--~~~i~W~ 124 (505)
.|.|..++ ..++|.|+=...+..+.......+.|.. .+|.+.+.+.+ +.+|+...-.|.+..+ | ...+.|+
T Consensus 199 ~LtI~slt-aaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P----vL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 199 PLTIKSVD-WRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP----SLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred ceEEEecc-hhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc----cccCCCceEEEEeeeecCCCceEEEEE
Confidence 39999999 9999999866555555544455555533 36666666533 7799999999998776 4 3489999
Q ss_pred ECCEEecC-CC---cEEEeeCC------CEEEcCCC-CCCCEEEEEEEE-cCCCceeee----EEEEEEeCCeeeeeCCC
Q psy14886 125 KDGNIIGS-GG---RRKIFENG------NLLISPVS-RDDSGIYSCTAT-NVHGMDESK----GRLIVLHGPSYYEQLPP 188 (505)
Q Consensus 125 ~~g~~~~~-~~---~~~~~~~~------~l~i~~v~-~~d~G~y~C~~~-~~~g~~~~~----~~l~v~~~p~~~~~~~~ 188 (505)
+||.++.. .. ......++ +|.+.... ....=..+|.+. ...+..... ..-.|..+|.+.
T Consensus 274 ~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is----- 348 (486)
T PHA03273 274 KNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVS----- 348 (486)
T ss_pred eCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEE-----
Confidence 99998872 11 11112222 23333321 122236799875 332222222 222333333322
Q ss_pred ceEEEeeccEEEEEEeeecCCCCeEEEEEeCC
Q psy14886 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 220 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~ 220 (505)
+....| ...|.+.--|.-.+.+.|..+.
T Consensus 349 -~~F~~G---~AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 349 -VTVEDG---DAVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred -EEEeCC---EEEEecccccCCCeeEEEEccC
Confidence 222223 3557766655445788897655
No 313
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.92 E-value=0.074 Score=60.24 Aligned_cols=233 Identities=15% Similarity=0.131 Sum_probs=109.3
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEE--EcccCceEeeEE
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA--KNQLKTRYSSAQ 80 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~--~~~~~~~~~~~~ 80 (505)
.|..+.+.=.+.+.....+.|.+++..-... . .....-.+ . -...|.|+-.. .|..+.......
T Consensus 1355 lG~tV~Ftatss~g~~~sw~WDFGDG~ts~t-----~----st~qNptH----T-Y~~pGtYTVTLTVtN~~gs~T~s~~ 1420 (2740)
T TIGR00864 1355 LGDEAQFQACAEPEFNYRYEWDFGGEEAAPL-----P----AAGAEVTF----I-YNDPGCYLVTVAASNNISAANDSAL 1420 (2740)
T ss_pred cCCeEEEEEecCCCCcEEEEEEeCCCCcccc-----c----cCCCcceE----E-cCCCceEEEEEEEECCCcceeeeeE
Confidence 4666666644433235678898865421100 0 00000011 2 45678997764 455555555666
Q ss_pred EEEEecCCCccCCCCCce-EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEE
Q psy14886 81 LRVLTLKPSFKKRPLESE-TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~-~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C 159 (505)
+.|....+.+........ .....+..+.+.=...+. .....|...+....... +-+. .-...|.|+.
T Consensus 1421 I~V~~Pv~~~~ft~ngT~g~~ltlg~pv~Ftd~StGt-~~Sy~WdFGDGstst~q------nptH-----tY~~~GtYtV 1488 (2740)
T TIGR00864 1421 IEVLEPVGATSFKHNGSHGNNLELGQPYLFSAFGRAR-NASYLWDFGDGGLLEGP------EILH-----AFNSPGDFNI 1488 (2740)
T ss_pred EEEecCCCcceeeecCCcccccccCcceEEeecCCCC-ceEEEEECCCCCccCcc------ceEE-----EcCCCceEEE
Confidence 677642222111100000 001223333332222232 34777877432221111 0011 1245788876
Q ss_pred E--EEcCCCceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeee
Q psy14886 160 T--ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237 (505)
Q Consensus 160 ~--~~~~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 237 (505)
. +.|..|.......+.|..+............+..+..+.+.-....+ ....|.|...+......
T Consensus 1489 tLTvtN~~Gsst~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~G--s~v~ysWdFGDg~ts~~----------- 1555 (2740)
T TIGR00864 1489 RLAAANEVGKNEATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAG--DDVRFSWILCDHCTPIF----------- 1555 (2740)
T ss_pred EEEEECCCCceEEEEEEEEeccccceEEcCCCccccccceEEEEEEccCC--CceeEEEEeCCCCcccc-----------
Confidence 5 56888887777777775543322222333334445556666333222 24578898754221110
Q ss_pred ecCCeEEEecCCCCCCEEEE--EEEEecCCcEEEEEEEEEcCC
Q psy14886 238 IDGGLLEITNASFADAGEYE--CVVKSTVGKISTKTTVIVEGP 278 (505)
Q Consensus 238 ~~~~~l~i~~~~~~~~g~y~--C~~~n~~g~~~~~~~l~v~~~ 278 (505)
.+.. .+. +....|.|+ ..+.|..|....+..+.|+.+
T Consensus 1556 -~npt-~~y--TY~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~ 1594 (2740)
T TIGR00864 1556 -GGNT-IFY--TFRSVGTFNIIVTAENDVGAAQASIFLFVLQE 1594 (2740)
T ss_pred -CCCc-eEE--eecCCceEEEEEEEecCCCccceeEEEEEeec
Confidence 0111 111 113446665 556899998877777777653
No 314
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.92 E-value=5.6e-05 Score=53.11 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=41.2
Q ss_pred EEEEeecCCC-CCCeEEEEECCEEecCCCcEEEe-eCC------CEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 107 VTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIF-ENG------NLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 107 v~l~C~~~~~-p~~~i~W~~~g~~~~~~~~~~~~-~~~------~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
+.|.|.+.+. |.+.|+|+++|+.+......... .++ .|.+.....++.+.|+|.|.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899998765 88899999999987543211111 112 2555555556678999999987544
No 315
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.91 E-value=0.00014 Score=55.45 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=45.4
Q ss_pred CCCCCceEEEEEEeccC------CCeEEEEECCEE------Cc-CC---CCCCCCCCcEEEE------CCeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP------DVTYSWFRNGEL------LN-SE---TLPLEDQDRYFIQ------DNVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p------~~~~~W~~~~~~------l~-~~---~~~~~~~~~~~~~------~~~L~i~~~~~~ 58 (505)
+.+|++|+|.|...... ...+.|+|...- +. .. ......++|+... +.+|.|.+++ .
T Consensus 11 ~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~-~ 89 (119)
T cd05712 11 VQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQ-P 89 (119)
T ss_pred EeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCC-h
Confidence 36899999999885321 356999995321 10 00 0111223566552 2479999999 9
Q ss_pred CCCeEEEEEEEc
Q psy14886 59 RDPAMYQCRAKN 70 (505)
Q Consensus 59 ~d~G~Y~C~~~~ 70 (505)
+|+|.|.|.+..
T Consensus 90 ~Dsg~Y~C~~~~ 101 (119)
T cd05712 90 EDSGKYFFRVEL 101 (119)
T ss_pred hhCeEEEEEEEc
Confidence 999999998864
No 316
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.91 E-value=4.9e-05 Score=57.80 Aligned_cols=68 Identities=19% Similarity=0.363 Sum_probs=48.5
Q ss_pred CceEEeeCCCeEEEEeecCC--CCCCeEEEEEC--CEE----e--c-----------CCCcEEEeeC-----CCEEEcCC
Q psy14886 96 ESETYAGEGGNVTIFCNPEA--APKPKFVWKKD--GNI----I--G-----------SGGRRKIFEN-----GNLLISPV 149 (505)
Q Consensus 96 ~~~~~v~~g~~v~l~C~~~~--~p~~~i~W~~~--g~~----~--~-----------~~~~~~~~~~-----~~l~i~~v 149 (505)
+..+.+.+|++++|.|.+.+ .+...+.|++. +.. + . ...++.+..+ ..|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 35567889999999999876 56678999983 221 0 0 1234443322 24999999
Q ss_pred CCCCCEEEEEEEEc
Q psy14886 150 SRDDSGIYSCTATN 163 (505)
Q Consensus 150 ~~~d~G~y~C~~~~ 163 (505)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999864
No 317
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.89 E-value=0.00011 Score=53.62 Aligned_cols=73 Identities=30% Similarity=0.435 Sum_probs=48.5
Q ss_pred CCeEEEEeecCCCCC-CeEEEEECCE----Eec---C----------CCcEEEe----eCCCEEEcCCCCCCCEEEEEEE
Q psy14886 104 GGNVTIFCNPEAAPK-PKFVWKKDGN----IIG---S----------GGRRKIF----ENGNLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 104 g~~v~l~C~~~~~p~-~~i~W~~~g~----~~~---~----------~~~~~~~----~~~~l~i~~v~~~d~G~y~C~~ 161 (505)
|++++|.|....... ..|.|++... .+. . ..+.... .+.+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998654433 3799998421 110 0 1121221 1235999999999999999998
Q ss_pred E-cCCCceeeeEEEEE
Q psy14886 162 T-NVHGMDESKGRLIV 176 (505)
Q Consensus 162 ~-~~~g~~~~~~~l~v 176 (505)
. .+.|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 46677777777776
No 318
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.89 E-value=8.1e-05 Score=54.59 Aligned_cols=71 Identities=23% Similarity=0.425 Sum_probs=47.5
Q ss_pred eEEEEeecCCCC---CCeEEEEEC--CE---Ee---cC----------CCcEEEee-----CCCEEEcCCCCCCCEEEEE
Q psy14886 106 NVTIFCNPEAAP---KPKFVWKKD--GN---II---GS----------GGRRKIFE-----NGNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 106 ~v~l~C~~~~~p---~~~i~W~~~--g~---~~---~~----------~~~~~~~~-----~~~l~i~~v~~~d~G~y~C 159 (505)
+++|.|...... ...|.|++. +. .+ .. .+|..+.. +.+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 688999875433 348999983 21 11 00 02333321 3369999999999999999
Q ss_pred EEEc-CCCceeeeEEEEE
Q psy14886 160 TATN-VHGMDESKGRLIV 176 (505)
Q Consensus 160 ~~~~-~~g~~~~~~~l~v 176 (505)
.+.+ +.|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9987 6677666677766
No 319
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.89 E-value=9.3e-05 Score=51.86 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=41.6
Q ss_pred EEEEeecCCC-CCCeEEEEECCEEecCCCcEEEe--eCC------CEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 107 VTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIF--ENG------NLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 107 v~l~C~~~~~-p~~~i~W~~~g~~~~~~~~~~~~--~~~------~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
++|.|.+.|. |...|+|+++|+.+......... .++ .|.+......+...|+|.|.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 6899999874 77899999999987543222111 111 3556555566778999999876543
No 320
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.88 E-value=0.00011 Score=50.55 Aligned_cols=65 Identities=25% Similarity=0.464 Sum_probs=41.9
Q ss_pred ceEEEEEEec-cCC-CeEEEEECCEECcCCCCC----CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 6 DLTWTCEAFG-VPD-VTYSWFRNGELLNSETLP----LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 6 ~~~l~C~~~~-~p~-~~~~W~~~~~~l~~~~~~----~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
.++|.|.+.| +|. ..++|+|||+++...... ....+.|. ..+.|.+.... .++...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~-~~s~L~v~~~~-~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYF-LSSYLTVSAST-WESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEE-EEEEEEEcccc-CCCCCEEEEEEEEcC
Confidence 3689999998 464 799999999975422110 01122222 23567776656 667779999998643
No 321
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.88 E-value=6.6e-05 Score=55.99 Aligned_cols=68 Identities=19% Similarity=0.349 Sum_probs=44.9
Q ss_pred CCCCCceEEEEEEecc-CCCeEEEEECCEE---C--------cCCCCC----CCCCCcEEE--E----CCeEEEEcCCCC
Q psy14886 1 MDNQADLTWTCEAFGV-PDVTYSWFRNGEL---L--------NSETLP----LEDQDRYFI--Q----DNVLTIRYLNPE 58 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~-p~~~~~W~~~~~~---l--------~~~~~~----~~~~~~~~~--~----~~~L~i~~~~~~ 58 (505)
|++|++++|.|.+.+. ....+.|+|.... . ...... .....++.. . ...|.|.+++ .
T Consensus 3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~-~ 81 (107)
T cd07700 3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK-P 81 (107)
T ss_pred EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC-H
Confidence 5799999999998753 3468999994221 0 000000 011345543 2 1369999999 9
Q ss_pred CCCeEEEEEEE
Q psy14886 59 RDPAMYQCRAK 69 (505)
Q Consensus 59 ~d~G~Y~C~~~ 69 (505)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999975
No 322
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.87 E-value=0.0072 Score=54.55 Aligned_cols=159 Identities=19% Similarity=0.284 Sum_probs=92.5
Q ss_pred eEEEEcCCCCCCCeEEEEEEEcccCceEee--EEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-C--CCeEEE
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQLKTRYSS--AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P--KPKFVW 123 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~--~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p--~~~i~W 123 (505)
.|.|..++ ...+|.|+=...+..+..... +.|..+ .+|.+.+.+.+ +.+|+...-.|.+..+ | ...+.|
T Consensus 183 ~L~I~slt-~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y-r~Psvsv~~~P----vL~Ge~Y~AtC~va~YYPp~Sv~lrW 256 (466)
T PHA03270 183 RLVIQELT-LATQGMYYWARGPADRPHRYGTWTRVRMF-RRPSLSIRPHA----VLEGEPFGATCVAANYYPGDRAAFRW 256 (466)
T ss_pred eEEEEEcc-cccceEEEEEEecCCCceeeeeEEEEEEe-cCCcccccCCc----cccCCCceEEEEeeeecCCCceEEEE
Confidence 49999999 999999999977666544433 444444 36666666533 6799999999998776 4 348999
Q ss_pred EECCEEecCCCc----EEEeeCCCEEEcCCCCCCCE------EEEEEEE-cCCCceeee----EEEEEEeCCeeeeeCCC
Q psy14886 124 KKDGNIIGSGGR----RKIFENGNLLISPVSRDDSG------IYSCTAT-NVHGMDESK----GRLIVLHGPSYYEQLPP 188 (505)
Q Consensus 124 ~~~g~~~~~~~~----~~~~~~~~l~i~~v~~~d~G------~y~C~~~-~~~g~~~~~----~~l~v~~~p~~~~~~~~ 188 (505)
++||..+..-.. .....++...++-++..+.+ ..+|.+. ......... ..-.|..+|.+..
T Consensus 257 f~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv---- 332 (466)
T PHA03270 257 FEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEM---- 332 (466)
T ss_pred EeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEE----
Confidence 999998753111 11122332223333333222 6789875 222222222 2223333333322
Q ss_pred ceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEe
Q psy14886 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 223 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~ 223 (505)
....| ...|.+.--|. .+++.|..++...
T Consensus 333 --~F~dG---~AVCtA~CVPe-gV~l~W~V~D~~~ 361 (466)
T PHA03270 333 --EFGGD---EAVCTAACVPE-GVTLAWLLGADPA 361 (466)
T ss_pred --EEeCC---EEEEeccccCC-CCEEEEEecCCCC
Confidence 22222 34577666654 6788898655433
No 323
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.86 E-value=0.0001 Score=54.57 Aligned_cols=74 Identities=24% Similarity=0.361 Sum_probs=49.9
Q ss_pred CCeEEEEeecCCCC-------CCeEEEEECC-----EEe----cC----------CCcEEEee------CCCEEEcCCCC
Q psy14886 104 GGNVTIFCNPEAAP-------KPKFVWKKDG-----NII----GS----------GGRRKIFE------NGNLLISPVSR 151 (505)
Q Consensus 104 g~~v~l~C~~~~~p-------~~~i~W~~~g-----~~~----~~----------~~~~~~~~------~~~l~i~~v~~ 151 (505)
|++++|.|...-.| .+.|.|.+.. ... .. .+|..+.. +.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 77899999944222 3689998741 111 01 12333322 23699999999
Q ss_pred CCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 152 DDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 152 ~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
+|+|.|.|.+.......+..+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999876666666777764
No 324
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.84 E-value=0.00017 Score=53.59 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCeeeeeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcc--cCCeeeecCCeEEEecCCCCCCEEE
Q psy14886 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL--ETPNINIDGGLLEITNASFADAGEY 256 (505)
Q Consensus 179 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y 256 (505)
+|..............|+.++|.|.+.+..++.+.+.|+++|..+........ .........+.|.+.....+....|
T Consensus 5 ~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~y 84 (111)
T cd05772 5 KPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQV 84 (111)
T ss_pred CCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccCce
Confidence 33333333333445567889999999998777899999999999754211110 0000111122344443333333459
Q ss_pred EEEEEecCC
Q psy14886 257 ECVVKSTVG 265 (505)
Q Consensus 257 ~C~~~n~~g 265 (505)
+|.+.+...
T Consensus 85 tC~V~H~~l 93 (111)
T cd05772 85 TCEVQHRTL 93 (111)
T ss_pred EEEEEeCCC
Confidence 999988653
No 325
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.84 E-value=0.00026 Score=52.62 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=31.3
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEE
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~ 177 (505)
.+|.|.+++.+|.|.|.|.+.+........+.|.|.
T Consensus 79 asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 79 ASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred eEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 369999999999999999999888777777777774
No 326
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.84 E-value=0.00013 Score=52.49 Aligned_cols=68 Identities=16% Similarity=0.389 Sum_probs=43.5
Q ss_pred CCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---C-CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 4 QADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---P-LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 4 G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
++.++|.|.+.| +| ...|+|++||..+..... + ....+.|. ..+.|.+..-. ..+...|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~-~~S~L~v~~~~-w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFS-TTSELNVTQED-WKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEE-EEEEEEEchHH-hcCCCeEEEEEEECCe
Confidence 466899999998 56 589999999998743211 1 11122222 23456666444 3455689999987543
No 327
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.84 E-value=7.8e-05 Score=54.49 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=44.8
Q ss_pred CCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 3 NQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
+++.++|.|.+.| +| ...|+|++||+++..... .. ..++.|.. .+.|.+..-. ..+...|+|.+.+..
T Consensus 16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~-~s~L~v~~~~-w~~~~~~sC~V~H~~ 89 (100)
T cd07699 16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSL-SSYLTLTKSD-WNKHKVYTCEVTHEG 89 (100)
T ss_pred cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEE-EEEEEEcHHH-hCCCCeEEEEEEecC
Confidence 5788999999988 56 689999999999853311 01 11222322 2456665544 445668999998754
No 328
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.84 E-value=0.00015 Score=54.99 Aligned_cols=70 Identities=21% Similarity=0.405 Sum_probs=46.5
Q ss_pred ceEEeeCCCeEEEEeecCCCC----CCeEEEEECCE------Eec----------CC----CcEEEee-----CCCEEEc
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP----KPKFVWKKDGN------IIG----------SG----GRRKIFE-----NGNLLIS 147 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p----~~~i~W~~~g~------~~~----------~~----~~~~~~~-----~~~l~i~ 147 (505)
..+.+.+|++++|.|...... ...+.|++... .+. .. .|..+.. +.+|.|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 556788999999999875432 24799986211 110 01 1122211 1359999
Q ss_pred CCCCCCCEEEEEEEEcCCC
Q psy14886 148 PVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g 166 (505)
+++.+|+|.|.|.+.+..+
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eCCcccCEEEEEEEEeCCC
Confidence 9999999999999997654
No 329
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.82 E-value=0.00012 Score=49.86 Aligned_cols=65 Identities=32% Similarity=0.500 Sum_probs=46.2
Q ss_pred eEEEEEEeccCCCeEEEEECCEECcCCCCC-CCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLP-LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 7 ~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~-~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
+.|.|.+.+.+...+.|++++......... .............|.|.+++ ..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVT-LEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccC-cccCcEEEEEEecCc
Confidence 579999988678999999988776532210 00111222345679999999 999999999998654
No 330
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.79 E-value=0.00017 Score=50.58 Aligned_cols=60 Identities=13% Similarity=0.299 Sum_probs=41.1
Q ss_pred EEEEeecCCC-CCCeEEEEECCEEecCCCcEEE-eeC-CC------EEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 107 VTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKI-FEN-GN------LLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 107 v~l~C~~~~~-p~~~i~W~~~g~~~~~~~~~~~-~~~-~~------l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
+.|.|.+.+. |.+.|+|+++|+.+........ ..+ ++ |.+.....++...|+|.|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 6899998876 8889999999998764322111 112 22 44445556677899999998653
No 331
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.78 E-value=0.00012 Score=55.44 Aligned_cols=68 Identities=28% Similarity=0.474 Sum_probs=48.4
Q ss_pred ceEEeeCCCeEEEEeecC-CCCCCeEEEEECCE-----Eec---C-----------CCcEEEeeCC-----CEEEcCCCC
Q psy14886 97 SETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGN-----IIG---S-----------GGRRKIFENG-----NLLISPVSR 151 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~-~~p~~~i~W~~~g~-----~~~---~-----------~~~~~~~~~~-----~l~i~~v~~ 151 (505)
..+.+.+|+++.|.|... ......+.|++... .+. . ..+..+..+. +|.|.+++.
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 456789999999999987 44556999998221 111 0 1233333332 499999999
Q ss_pred CCCEEEEEEEEcC
Q psy14886 152 DDSGIYSCTATNV 164 (505)
Q Consensus 152 ~d~G~y~C~~~~~ 164 (505)
+|+|.|.|.+...
T Consensus 89 ~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 89 SDSGTYFCQVSTS 101 (114)
T ss_dssp GGEEEEEEEEEES
T ss_pred CcCEEEEEEEEEC
Confidence 9999999999876
No 332
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.76 E-value=0.0038 Score=57.07 Aligned_cols=159 Identities=19% Similarity=0.201 Sum_probs=89.9
Q ss_pred eEEEEcCCCCCCCeEEEEEEEcc-cCceEe--eEEEEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCC-C--CCeEE
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQ-LKTRYS--SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-P--KPKFV 122 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~-~~~~~~--~~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~-p--~~~i~ 122 (505)
.|.|.+++ ..++|.|+=.+.+. .+.... .+.|.+.. +|.+.+.+.+ +.+|+...-.|.+..+ | ...+.
T Consensus 290 pL~I~slt-aATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr-~PsVsV~p~P----VL~Ge~YkAtC~vA~YYPp~Svrlr 363 (566)
T PHA03269 290 SLHILSLD-ASTEGTYIWRVIHTANKNVINEHHITVMSYK-RPNITVIGDP----VLLGNPYAAYCKVNKYYPPHSVIVK 363 (566)
T ss_pred ceEEeecc-cccCceEEEEEecCCCCceeeeeEEEEEEec-CCCccccCCc----cccCCCceEEEEeeeecCCCceEEE
Confidence 59999999 99999998665432 233333 45555553 6666666533 7799999999998776 4 34899
Q ss_pred EEECCEEecCC---CcEEEeeCCC------EEEcCCCCCC--CEEEEEEEE-cCCCceeee----EEEEEEeCCeeeeeC
Q psy14886 123 WKKDGNIIGSG---GRRKIFENGN------LLISPVSRDD--SGIYSCTAT-NVHGMDESK----GRLIVLHGPSYYEQL 186 (505)
Q Consensus 123 W~~~g~~~~~~---~~~~~~~~~~------l~i~~v~~~d--~G~y~C~~~-~~~g~~~~~----~~l~v~~~p~~~~~~ 186 (505)
|++||..+... .......+|. |.+......| .=..+|.+. ...+..... ..-.|...|.+.
T Consensus 364 Wf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtIS--- 440 (566)
T PHA03269 364 WTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVS--- 440 (566)
T ss_pred EEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEE---
Confidence 99998887642 1122223332 3332111111 224699875 333322221 222333333322
Q ss_pred CCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 187 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
+....| ...|.+.--|.-.+++.|..+...
T Consensus 441 ---m~FedG---~AVCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 441 ---IEIIDG---HIVCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred ---EEEeCC---EEEEecccccCCCceEEEEecCCC
Confidence 222333 355776666554568889875544
No 333
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.75 E-value=4.9e-05 Score=54.59 Aligned_cols=69 Identities=20% Similarity=0.389 Sum_probs=45.2
Q ss_pred CCceEEEEEEe-ccCCCeEEEEECCEECcCC---CCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 4 QADLTWTCEAF-GVPDVTYSWFRNGELLNSE---TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 4 G~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~---~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
|+.+.|.|.+. ++|++.|+|+.++..+... .......+.+ ...+.|.+..-. .++...++|.|.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~-~~~S~l~~~~~~-~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLF-TVSSTLTLTPTR-EDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTE-EEEEEEEEETTG-GGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcc-eEEEEEEEEcCh-HHCCeEEEEEEECCccC
Confidence 67999999885 5899999999998877211 0011122222 223578787665 66777899999976543
No 334
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.67 E-value=0.00039 Score=50.10 Aligned_cols=67 Identities=19% Similarity=0.363 Sum_probs=42.1
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC----CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL----PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~----~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
++|+.++|.|.+.| +| ...++|++||+++..... ....++.|.+ .+.|.+ . ..+...|+|.+.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~-~s~L~~---~-~~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQI-LVMLET---T-PSRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEE-EEEEEE---c-CCCCCEEEEEEEeCCC
Confidence 46889999999998 56 468999999998764310 0011112222 123433 3 3455589999987543
No 335
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.67 E-value=0.00037 Score=51.04 Aligned_cols=67 Identities=25% Similarity=0.398 Sum_probs=46.3
Q ss_pred EEeeCCCeEEEEeecCCC-CCCeEEEEECCE-----Ee--------cCCCcEEEeeC-----CCEEEcCCCCCCCEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAA-PKPKFVWKKDGN-----II--------GSGGRRKIFEN-----GNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~-p~~~i~W~~~g~-----~~--------~~~~~~~~~~~-----~~l~i~~v~~~d~G~y~C 159 (505)
+.+.+|++++|.|..... ....+.|++... .+ ....+..+..+ ..|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 357899999999997653 455899998431 11 01233433321 249999999999999999
Q ss_pred EEEcCC
Q psy14886 160 TATNVH 165 (505)
Q Consensus 160 ~~~~~~ 165 (505)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987643
No 336
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=97.66 E-value=0.0002 Score=53.36 Aligned_cols=90 Identities=22% Similarity=0.251 Sum_probs=56.9
Q ss_pred CCCceeeeeccccccEEEEEEeCCcc----ccC------CCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccc
Q psy14886 388 QAPSRIGGGGGKIGDLSISWEPLPRE----KQN------APNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457 (505)
Q Consensus 388 ~~P~~~~~~~~~~~~v~l~W~~~~~~----~~~------~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 457 (505)
+||. +.+ ....+.|.|.+.+|... ..+ -.-..|.|.|.+.+... ....... ....+.|.+|.|
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~-~~~~~~~----~~~~~~l~~L~p 76 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNE-KKKEIET----KNSSVTLSDLKP 76 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSC-EEEEEES----SSEEEEEES--T
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCcc-ceEEEee----cCCEEEEeCCCC
Confidence 5665 666 46788999999995311 111 01357999999988551 2122222 345678999999
Q ss_pred eeeEEEEEEEecC--CCCCCCCceEEEee
Q psy14886 458 YTEYEVKVQAIND--VGPGPESEVVTIWH 484 (505)
Q Consensus 458 ~~~Y~~~v~a~n~--~G~g~~s~~~~~~t 484 (505)
++.|.|+|.|... .-.|.+|++....|
T Consensus 77 ~t~YCv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 77 GTNYCVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp TSEEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred CCCEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence 9999999999332 34588888877665
No 337
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.64 E-value=0.0004 Score=49.61 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=40.4
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCCCC----CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETLPL----EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~~~----~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
..|...+|.|.+.| +| ...++|.|||+++. ..... ..++.|.. .+.|.+ . ..+...|+|.+.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~-~s~l~~---~-~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYL-LKSTEF---T-PTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEE-EEEEEE---C-CCCCCeEEEEEEECC
Confidence 34666799999998 55 68999999999876 31100 11112221 123333 4 556668999998643
No 338
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.63 E-value=0.00015 Score=55.00 Aligned_cols=69 Identities=25% Similarity=0.429 Sum_probs=45.6
Q ss_pred CCCCCceEEEEEEeccC--CCeEEEEEC--C-EE--C---cC-CCC---CCCCCCcEEEE--C----CeEEEEcCCCCCC
Q psy14886 1 MDNQADLTWTCEAFGVP--DVTYSWFRN--G-EL--L---NS-ETL---PLEDQDRYFIQ--D----NVLTIRYLNPERD 60 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~~~~~W~~~--~-~~--l---~~-~~~---~~~~~~~~~~~--~----~~L~i~~~~~~~d 60 (505)
|++|++++|.|...+.. ...+.|||. | .+ | .. ... .....+|+... . ..|.|.+++ .+|
T Consensus 9 v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~-~~D 87 (117)
T cd04981 9 VKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT-PED 87 (117)
T ss_pred EcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC-HHH
Confidence 47899999999986432 467999993 2 22 1 00 000 11123566652 2 269999999 999
Q ss_pred CeEEEEEEEc
Q psy14886 61 PAMYQCRAKN 70 (505)
Q Consensus 61 ~G~Y~C~~~~ 70 (505)
+|.|.|.+..
T Consensus 88 sa~YyCa~~~ 97 (117)
T cd04981 88 TAVYYCARGL 97 (117)
T ss_pred CEEEEEEEEc
Confidence 9999998764
No 339
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.62 E-value=0.0004 Score=51.81 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=46.2
Q ss_pred CCCceEEEEEEec-cCC-CeEEEEECCEECcCCCC----CCCCCCcEEEECCeEEEEcCCCCCC-CeEEEEEEEcccCce
Q psy14886 3 NQADLTWTCEAFG-VPD-VTYSWFRNGELLNSETL----PLEDQDRYFIQDNVLTIRYLNPERD-PAMYQCRAKNQLKTR 75 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p~-~~~~W~~~~~~l~~~~~----~~~~~~~~~~~~~~L~i~~~~~~~d-~G~Y~C~~~~~~~~~ 75 (505)
+++.++|.|.+.+ +|. ..|+|+||++.+..... .....+......+.|.+.... ..+ ...|+|.+.+.....
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~-w~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATE-WFNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHH-hccCCCeEEEEEEEeCCcc
Confidence 5678999999998 564 79999999998764321 111111122233567776554 333 458999998765444
Q ss_pred E
Q psy14886 76 Y 76 (505)
Q Consensus 76 ~ 76 (505)
.
T Consensus 96 ~ 96 (115)
T cd05769 96 T 96 (115)
T ss_pred c
Confidence 3
No 340
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.62 E-value=0.00031 Score=51.43 Aligned_cols=69 Identities=25% Similarity=0.527 Sum_probs=43.6
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCC----CCCCC---CCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSET----LPLED---QDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~----~~~~~---~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
..|+.++|.|.+.| +| ...++|+|||+++.... .+... .+.|.+ .+.|.+..-. ..+...|+|.+.+..
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~-~s~L~v~~~~-w~~~~~ytC~V~H~~ 91 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFL-YSKLTVSAED-WNAGDVFTCVVGHEA 91 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEE-EEEEEEcHHH-hcCCCcEEEEeEeCC
Confidence 35788999999998 45 47899999999875321 11111 123333 3456664433 334558999998654
No 341
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=97.60 E-value=0.00034 Score=52.03 Aligned_cols=86 Identities=16% Similarity=0.234 Sum_probs=59.5
Q ss_pred CCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCcc--ceee
Q psy14886 383 ADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF--YYTE 460 (505)
Q Consensus 383 ~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--p~~~ 460 (505)
......+|.++++... .-..+|.|++. ....+-..|.|+|+..+...|....... +...+..+|++.. +...
T Consensus 18 ~~~~lp~P~nv~~~s~-nf~~iL~W~~~---~~~~~~~~ytVq~~~~~~~~W~~v~~C~--~i~~~~Cdlt~~~~~~~~~ 91 (107)
T PF01108_consen 18 ASASLPAPQNVTVDSV-NFKHILRWDPG---PGSPPNVTYTVQYKKYGSSSWKDVPGCQ--NITETSCDLTDETSDPSES 91 (107)
T ss_dssp --SSGSSCEEEEEEEE-TTEEEEEEEES---TTSSSTEEEEEEEEESSTSCEEEECCEE--EESSSEEECTTCCTTTTSE
T ss_pred ccccCCCCCeeEEEEE-CCceEEEeCCC---CCCCCCeEEEEEEEecCCcceeecccee--cccccceeCcchhhcCcCC
Confidence 3444568999999755 44589999982 3344678999999977788999773222 1223566666643 7889
Q ss_pred EEEEEEEecCCCCC
Q psy14886 461 YEVKVQAINDVGPG 474 (505)
Q Consensus 461 Y~~~v~a~n~~G~g 474 (505)
|.+||+|.-....|
T Consensus 92 Y~~rV~A~~~~~~S 105 (107)
T PF01108_consen 92 YYARVRAEVGNQTS 105 (107)
T ss_dssp EEEEEEEEETTEEE
T ss_pred EEEEEEEEeCCccC
Confidence 99999998665444
No 342
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.58 E-value=0.00045 Score=51.45 Aligned_cols=64 Identities=19% Similarity=0.396 Sum_probs=43.1
Q ss_pred EeeCCCeEEEEeecCCC-CCCeEEEEEC--C---EE---e---cC-----------CCcEEEe--eCC---CEEEcCCCC
Q psy14886 100 YAGEGGNVTIFCNPEAA-PKPKFVWKKD--G---NI---I---GS-----------GGRRKIF--ENG---NLLISPVSR 151 (505)
Q Consensus 100 ~v~~g~~v~l~C~~~~~-p~~~i~W~~~--g---~~---~---~~-----------~~~~~~~--~~~---~l~i~~v~~ 151 (505)
.+.+|++++|.|.+.+. ....+.|++. | +. + .. ..++... .+. .|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 47789999999998653 3448999983 2 10 0 00 1233321 112 399999999
Q ss_pred CCCEEEEEEEEc
Q psy14886 152 DDSGIYSCTATN 163 (505)
Q Consensus 152 ~d~G~y~C~~~~ 163 (505)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999853
No 343
>KOG4258|consensus
Probab=97.55 E-value=6.7e-05 Score=72.79 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=86.4
Q ss_pred eEEeeeccCCceeEEEEEEEcCCCcCC-CCCCC-CCccCCC----CCCCCCCceeeeeccccccEEEEEEeCCccccCCC
Q psy14886 345 ASIENVLVPWSTYEFKVIAGNELGYGE-PSSPS-PQYNTPA----DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAP 418 (505)
Q Consensus 345 ~~~~~~L~~~~~y~~~v~a~n~~G~~~-~s~~~-~~~~t~~----~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~ 418 (505)
.+.+..|..++.|...+.|.|.++... .|... +..+|.+ +..++ |..+... .+.+++.|.|.+ |...||-
T Consensus 783 ~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a~~v~~RT~~~~~aD~i~g-~v~we~~-~~~~~v~l~w~E--P~~pNGl 858 (1025)
T KOG4258|consen 783 SYVISGLRHFTLYRIDLQACNHATPKCGCSHAAFVFARTMPTMGADDIPG-PVTWECH-IEMNSVILRWLE--PKEPNGL 858 (1025)
T ss_pred hhhhhccccchhhhhhHhhhcccccccccchhhhhhhccccccccccCCC-ceeEecc-cCcceEEEecCC--CCCCCcc
Confidence 344445999999999999999887611 12221 1222322 12222 3333333 278999999998 7889999
Q ss_pred CceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEE
Q psy14886 419 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482 (505)
Q Consensus 419 i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~ 482 (505)
|++|.|.|+..+.++-.. -+.-......--..|+.|.| ..|.++|+|-.-+|.|++.+.+.+
T Consensus 859 i~~Y~Vk~r~~~~et~v~-cvsR~~~~k~~gv~l~~l~~-G~y~~~vratSlaGng~~t~~~~~ 920 (1025)
T KOG4258|consen 859 ILNYEVKYRRNGDETHVE-CVSRMDYAKAGGVYLKRLNP-GNYSVRVRATSLAGNGSWTESVIF 920 (1025)
T ss_pred EEEEEEEEeeccCcchhh-hhhhhhhhhcCceEEEecCC-CcEEEEEEEEeeccCCCCcCCcce
Confidence 999999999877443222 11111111223345666666 689999999999999999998886
No 344
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.55 E-value=0.0015 Score=47.04 Aligned_cols=70 Identities=20% Similarity=0.353 Sum_probs=44.6
Q ss_pred CeEEEEeecCCC-CCCeEEEEECCE----Eec-----------C--CCcEEEe----eCCCEEEcCCCCCCCEEEEEEEE
Q psy14886 105 GNVTIFCNPEAA-PKPKFVWKKDGN----IIG-----------S--GGRRKIF----ENGNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 105 ~~v~l~C~~~~~-p~~~i~W~~~g~----~~~-----------~--~~~~~~~----~~~~l~i~~v~~~d~G~y~C~~~ 162 (505)
+.++|.|..... ...++.|.|... .+. . .+|.... .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 367899987543 344889988321 111 0 1233332 23579999999999999999986
Q ss_pred c-CCCceeeeEEE
Q psy14886 163 N-VHGMDESKGRL 174 (505)
Q Consensus 163 ~-~~g~~~~~~~l 174 (505)
. +.|...+.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 4 45665555443
No 345
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.54 E-value=0.00064 Score=49.07 Aligned_cols=64 Identities=28% Similarity=0.510 Sum_probs=38.9
Q ss_pred CCceEEEEEEec-cCC-CeEEEEECCEECcCCCC--C-C-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 4 QADLTWTCEAFG-VPD-VTYSWFRNGELLNSETL--P-L-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 4 G~~~~l~C~~~~-~p~-~~~~W~~~~~~l~~~~~--~-~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
|+.++|.|.+.| +|. ..++|+++++.+..... . . ..++.|. ..+.|.+ . ..+.+.|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~-~~s~l~v---~-~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQ-LWVTLEV---P-PEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEE-EEEEEEE---C-CCCCCEEEEEEEeCC
Confidence 778999999999 464 69999999964432210 0 0 0111111 1223333 4 457789999998654
No 346
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.53 E-value=0.0015 Score=45.52 Aligned_cols=77 Identities=29% Similarity=0.484 Sum_probs=48.4
Q ss_pred CCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCC---CeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS---TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 281 ~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
+|..+.+......++.++|.++...+. ..|.+.+...... .|....... ....+.+.+ |.+++.|
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~-L~~~~~Y 70 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGI--TGYIVGYRVEYREEGSSWKEVNVTP---------SSTSYTLTG-LKPGTEY 70 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCCC--CccEEEEEEEEecCCCccEEEEecC---------CccEEEEeC-cCCCCEE
Confidence 344466666777799999997654332 5677766544322 233321111 123445555 9999999
Q ss_pred EEEEEEEcCCCc
Q psy14886 358 EFKVIAGNELGY 369 (505)
Q Consensus 358 ~~~v~a~n~~G~ 369 (505)
.|+|.|.+..|.
T Consensus 71 ~v~v~a~~~~g~ 82 (83)
T smart00060 71 EFRVRAVNGAGE 82 (83)
T ss_pred EEEEEEEcccCC
Confidence 999999998654
No 347
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.53 E-value=0.00043 Score=46.93 Aligned_cols=59 Identities=34% Similarity=0.572 Sum_probs=43.8
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCc-------EEEeeCCCEEEcCCCCCCCEEEEEEEEcCC
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGR-------RKIFENGNLLISPVSRDDSGIYSCTATNVH 165 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~-------~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~ 165 (505)
+.|.|.+.+.+...+.|++++........ ........|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 46899998877789999998876543221 111223359999999999999999998765
No 348
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.48 E-value=0.00072 Score=48.83 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=40.5
Q ss_pred CCCCceEEEEEEecc--C-CCeEEEEECCEEC-cCC-CCCC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 2 DNQADLTWTCEAFGV--P-DVTYSWFRNGELL-NSE-TLPL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~--p-~~~~~W~~~~~~l-~~~-~~~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
..|+.++|.|.+.|. | ...++|.||+... ... .... ..++.|.+ .+.|.+..-. ..+.-.|+|.+.+..
T Consensus 12 ~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~-~s~l~v~~~~-w~~g~~ysC~V~H~~ 86 (96)
T cd07696 12 LLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSV-TSTLNVSTDD-WISGDTFQCKVTHPD 86 (96)
T ss_pred ccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEE-EEEEEeCHHH-ccCCCcEEEEEECCC
Confidence 458899999999987 5 5889999987432 211 0001 11222222 2455555433 223347999998754
No 349
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.47 E-value=0.0012 Score=47.43 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=41.3
Q ss_pred CCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC----CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 3 NQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL----PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~----~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
.|+..+|.|.+.| +| +..++|.|||+.+..... ....++.|.+ .+.|.+. ..+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~-~s~L~v~----~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQK-FSYLNFT----PEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEE-EEEEEEE----CCCCCeEEEEEEeCC
Confidence 4566899999998 56 589999999998763210 0111223332 2445554 334458999998654
No 350
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.46 E-value=0.0012 Score=47.53 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=40.6
Q ss_pred CCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 3 NQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
.++.++|.|.+.| +| ...++|.|||+.+..... .....+.| ...+.|.+..-. ....|+|.+.+..
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty-~~~S~L~vt~~~---~~~~ysC~V~H~g 85 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVY-STTSWLTVTKDS---LGKKFRCIYKHEG 85 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEE-EEEEEEEECchh---CCCeEEEEEEECC
Confidence 3567899999998 56 588999999998753311 11122222 223455554322 2335999998643
No 351
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.46 E-value=0.00048 Score=50.48 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=44.6
Q ss_pred EEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc---ccC---CeeeecCCeEEEecCCCCCCEEEEEEEEecCC
Q psy14886 192 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---LET---PNINIDGGLLEITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 192 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~---~~~---~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 265 (505)
+..+..++|.|.+.+..+..+.+.|.++|..+....... ... .......+.|.+..-...+...|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 344678999999999877789999999998875421100 000 01111122344433333456679999977543
No 352
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.45 E-value=0.00019 Score=50.37 Aligned_cols=62 Identities=27% Similarity=0.333 Sum_probs=39.7
Q ss_pred ceEEEEEEeccCC--CeEEEEECCE--E---CcCC---CC---CCCCCCcEEEEC------CeEEEEcCCCCCCCeEEEE
Q psy14886 6 DLTWTCEAFGVPD--VTYSWFRNGE--L---LNSE---TL---PLEDQDRYFIQD------NVLTIRYLNPERDPAMYQC 66 (505)
Q Consensus 6 ~~~l~C~~~~~p~--~~~~W~~~~~--~---l~~~---~~---~~~~~~~~~~~~------~~L~i~~~~~~~d~G~Y~C 66 (505)
+++|.|.+..... ..+.|++... . +... .. .....+|+.... .+|.|.+++ .+|+|.|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLR-VEDTGTYYC 79 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCC-HHHCEEEEE
Confidence 4789999976443 4799999542 1 1100 00 002345665421 479999999 999999999
Q ss_pred EE
Q psy14886 67 RA 68 (505)
Q Consensus 67 ~~ 68 (505)
.+
T Consensus 80 ~v 81 (81)
T smart00406 80 AV 81 (81)
T ss_pred cC
Confidence 63
No 353
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.43 E-value=0.00045 Score=44.72 Aligned_cols=50 Identities=12% Similarity=0.427 Sum_probs=37.1
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
..+.|.|.|.+ +..|.|++ |..+.. ..+.+|.+.+.. .+..|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~------------~~~~tlnLGs~~-~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILE------------VSNTLLDLGSRI-NDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Cccccc------------ccccEEeccCcc-cCCCcceEecCcc
Confidence 34689999965 35699999 544431 115678888888 8999999998865
No 354
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.39 E-value=0.00079 Score=51.10 Aligned_cols=67 Identities=24% Similarity=0.386 Sum_probs=47.0
Q ss_pred ceEEeeCCCeEEEEeecCCC-CCCeEEEEEC--CEE---e---------cCCCcEEEee-----CCCEEEcCCCCCCCEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAA-PKPKFVWKKD--GNI---I---------GSGGRRKIFE-----NGNLLISPVSRDDSGI 156 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~-p~~~i~W~~~--g~~---~---------~~~~~~~~~~-----~~~l~i~~v~~~d~G~ 156 (505)
..+.+.+|++++|.|..... ....+.|++. +.. + ...+++.+.. ..+|.|.++..+|+|.
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~ 86 (116)
T cd07706 7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAK 86 (116)
T ss_pred CceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 45678999999999997653 4458999982 221 1 0123444431 1259999999999999
Q ss_pred EEEEEEc
Q psy14886 157 YSCTATN 163 (505)
Q Consensus 157 y~C~~~~ 163 (505)
|.|.+..
T Consensus 87 Y~C~~~~ 93 (116)
T cd07706 87 YFCALST 93 (116)
T ss_pred EEEEEEC
Confidence 9999985
No 355
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.36 E-value=0.00094 Score=47.74 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=46.0
Q ss_pred CCCCCceEE-EEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 1 MDNQADLTW-TCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 1 v~~G~~~~l-~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
+.+|+.+.+ .|.+. |.|++.|+|+.+..............+.+.. .+.+.+...+ ..|.-.++|.+.+..-
T Consensus 13 ~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV-~S~~~l~p~r-~d~G~~vtC~V~H~al 85 (97)
T cd07704 13 IDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTV-TSEYIWVPSR-HANGHPLTCVVSHPAL 85 (97)
T ss_pred eecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEE-EEEEEEEeCH-HHCCcEEEEEEeCccc
Confidence 468999999 99985 5899999999863322111111112233333 3467777666 6677789999987644
No 356
>PHA02633 hypothetical protein; Provisional
Probab=97.34 E-value=0.00062 Score=42.83 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=34.3
Q ss_pred ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 46 QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 46 ~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
.+..|.|.++. .+|+|.|.|.++|.......++.|.|..
T Consensus 16 ~~~nLwilpa~-~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPT-QSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccc-cccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 45689999999 9999999999998887888888888875
No 357
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.34 E-value=0.00084 Score=49.64 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=42.0
Q ss_pred eeCCCeEEEEeecCCCCCCeEEEEEC--C--EE---ec---C------------CCcEEEeeCC---CEEEcCCCCCCCE
Q psy14886 101 AGEGGNVTIFCNPEAAPKPKFVWKKD--G--NI---IG---S------------GGRRKIFENG---NLLISPVSRDDSG 155 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~p~~~i~W~~~--g--~~---~~---~------------~~~~~~~~~~---~l~i~~v~~~d~G 155 (505)
+.+|++|+|.|.........+.|++. | .. +. . ..++...... .|.|.+++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 67899999999986554457999983 2 11 10 0 1122221111 4999999999999
Q ss_pred EEEEEEE
Q psy14886 156 IYSCTAT 162 (505)
Q Consensus 156 ~y~C~~~ 162 (505)
.|.|.+.
T Consensus 83 tY~Ca~~ 89 (104)
T cd05720 83 YYFCSVA 89 (104)
T ss_pred EEEEEEc
Confidence 9999876
No 358
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.34 E-value=0.001 Score=43.12 Aligned_cols=50 Identities=32% Similarity=0.527 Sum_probs=37.5
Q ss_pred CCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 103 ~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
..+.|.|.|.+. ..|.|++ |..+.... +.+|.+..+..+..|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~~------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNGA----TNITWKK-GKEILEVS------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecCC----CcEEEec-Cccccccc------ccEEeccCcccCCCcceEecCcc
Confidence 446899999762 3699999 65554321 45688888889999999998876
No 359
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.32 E-value=0.0016 Score=47.00 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=41.1
Q ss_pred eccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEE---EecCCCCCCEEEEEEEEecCC
Q psy14886 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE---ITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 195 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~---i~~~~~~~~g~y~C~~~n~~g 265 (505)
++.++|.|.+.+..++.+.+.|.++|......... .......++.+. ...+...+...|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~---~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVES---GEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccc---cceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 67899999999987778899999998643221100 011111122222 222334577899999977543
No 360
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.29 E-value=0.00089 Score=48.95 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=44.9
Q ss_pred EEeeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecC------CeEEEecCCCCCCEEEEEEEEecCC
Q psy14886 192 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG------GLLEITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 192 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~~~g~y~C~~~n~~g 265 (505)
...+..++|.|.+.+..+..+.+.|.++|..+...... .......+ +.|.+..-...+...|+|.+.+...
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~---~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQT---STTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEec---cccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 34567799999999987778999999999987532110 01111112 2344444444457789999987543
No 361
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.28 E-value=0.0021 Score=44.10 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=41.5
Q ss_pred EEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc---ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecC
Q psy14886 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---LETPNINIDGGLLEITNASFADAGEYECVVKSTV 264 (505)
Q Consensus 198 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 264 (505)
++|.|.+.+..++.+.+.|+++|..+....... ..........+.|.+.....++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 689999999877778999999998743321000 0000111112345555545667789999997754
No 362
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.27 E-value=0.0015 Score=46.88 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=44.7
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc---ccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE---LETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
....++|.|.+.+.-+..+.+.|.++|..+....... ..........+.|.+..-...+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 3456899999999877789999999998863321100 000111111233444443444667899999886543
No 363
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.23 E-value=0.0021 Score=46.25 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=40.6
Q ss_pred CceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 5 ADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 5 ~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
....+.|.+. |.|++.|+|+++........... ...+.....+.|.+.... .+|...|+|.+.+....
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~-~~~g~~tv~S~l~~~p~~-~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAETQSKE-NPNGTVTVTSEYRLVPSR-EANGKELTCVVSHPTLQ 84 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeec-CCCCCEEEEEEEEEecCH-HHCCCEEEEEEeCcccC
Confidence 4568899994 68999999999711111000000 111222233567776666 55666899999986643
No 364
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.22 E-value=0.0012 Score=46.50 Aligned_cols=67 Identities=25% Similarity=0.512 Sum_probs=42.8
Q ss_pred CCCCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CC-CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC
Q psy14886 2 DNQADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PL-EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK 73 (505)
Q Consensus 2 ~~G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~-~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~ 73 (505)
+.|+.++|.|.+.+ +| ...|+|+++|..+..... .. ..++.|.+ .+.|.+. ..+...|+|.+.+...
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~-~s~l~v~----~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSV-TSSLTVT----WNSGDEYSCRVTHESL 78 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEE-EEEEEEE----TTTTGGEEEEEEETTS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceee-eEEEEec----CCCCCEEEEEEEECCC
Confidence 35889999999998 56 578999999998763311 00 11222222 2456665 2344489999987554
No 365
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.21 E-value=0.0022 Score=47.87 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=45.6
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC---cccCC-eeeecCCeEEEecCCCCC-CEEEEEEEEecCCcEE
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN---ELETP-NINIDGGLLEITNASFAD-AGEYECVVKSTVGKIS 268 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~-~~~~~~~~l~i~~~~~~~-~g~y~C~~~n~~g~~~ 268 (505)
.+..++|.|.+.+..+..+.+.|.+++..+...... ..... ......+.|.+...+..+ ...|+|.+.+......
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~ 96 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT 96 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence 456789999999987778999999999887643210 00000 111122344444433323 5689999987655433
No 366
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.20 E-value=0.003 Score=48.12 Aligned_cols=68 Identities=25% Similarity=0.295 Sum_probs=45.3
Q ss_pred ceEEeeCCCeEEEEeecCCCC------CCeEEEEECC--E----Eec--C---------CCcEEEee---C--CCEEEcC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP------KPKFVWKKDG--N----IIG--S---------GGRRKIFE---N--GNLLISP 148 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p------~~~i~W~~~g--~----~~~--~---------~~~~~~~~---~--~~l~i~~ 148 (505)
..+.+.+|++|+|.|...... ...+.|++.. . .+. . .+|+.... . .+|.|.+
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~ 86 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD 86 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence 456789999999999764221 2468999842 1 110 0 12333321 1 2599999
Q ss_pred CCCCCCEEEEEEEEcC
Q psy14886 149 VSRDDSGIYSCTATNV 164 (505)
Q Consensus 149 v~~~d~G~y~C~~~~~ 164 (505)
++.+|+|.|.|.+...
T Consensus 87 l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 87 AQPEDSGKYFFRVELG 102 (119)
T ss_pred CChhhCeEEEEEEEcC
Confidence 9999999999998753
No 367
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.19 E-value=0.0016 Score=49.30 Aligned_cols=67 Identities=18% Similarity=0.433 Sum_probs=45.0
Q ss_pred ceEEeeCCCeEEEEeecCCCC--CCeEEEEEC--CE-E--e---cC-----------CCcEEEeeC---C--CEEEcCCC
Q psy14886 97 SETYAGEGGNVTIFCNPEAAP--KPKFVWKKD--GN-I--I---GS-----------GGRRKIFEN---G--NLLISPVS 150 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~--g~-~--~---~~-----------~~~~~~~~~---~--~l~i~~v~ 150 (505)
....+.+|++++|.|...+.. ...+.|++. |+ + + .. .+++....+ . .|.|.++.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 345689999999999875432 447999982 22 1 1 00 123333211 1 49999999
Q ss_pred CCCCEEEEEEEEc
Q psy14886 151 RDDSGIYSCTATN 163 (505)
Q Consensus 151 ~~d~G~y~C~~~~ 163 (505)
.+|+|.|.|.+..
T Consensus 85 ~~Dsa~YyCa~~~ 97 (117)
T cd04981 85 PEDTAVYYCARGL 97 (117)
T ss_pred HHHCEEEEEEEEc
Confidence 9999999998864
No 368
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.17 E-value=0.0018 Score=46.43 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=41.2
Q ss_pred CceEEEEEEe-ccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCce
Q psy14886 5 ADLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75 (505)
Q Consensus 5 ~~~~l~C~~~-~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~ 75 (505)
..+.+.|.+. |.|.+.|+|+++..............+.+. ..+.|.+.... .+|...|+|.+.+.....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~t-v~S~l~~~P~~-~d~Gk~ltC~v~h~al~~ 85 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVT-VTSEYSLVPTP-EANGKEVTCKVEHETLQE 85 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEE-EEEEEEEecCH-HHCCCEEEEEEeCcccCC
Confidence 3568999886 589999999997221110000001122222 23467776656 556668999999866443
No 369
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.17 E-value=0.00096 Score=43.00 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=34.4
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
.|.+|+|+|...+. .+.|.+|++.+.. .+..+.+.+-. ++.|.|.|.+.+
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g-------------~~~~~~~~~~~--e~~G~Y~C~~~~ 55 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQG-------------SDEKYLSLNHF--SSSGYYHCTADN 55 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCCC-------------CCceEEeeccC--CCCceEEEEeCC
Confidence 48899999986532 2999999966552 12334444433 689999999864
No 370
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.17 E-value=0.0018 Score=41.72 Aligned_cols=52 Identities=29% Similarity=0.484 Sum_probs=35.2
Q ss_pred eeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 101 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
-..|.+|+|+|..... .+.|.+++..+..... .+.+.+-. ++.|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~-------~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE-------KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCCCCc-------eEEeeccC-CCCceEEEEeCC
Confidence 3468999999976533 3999999865543222 23333333 789999999953
No 371
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.12 E-value=0.0014 Score=47.12 Aligned_cols=75 Identities=13% Similarity=0.237 Sum_probs=43.6
Q ss_pred eEEEeeccEEEEEEeeecC-CCCeEEEEEeCCEEecCCCC-CcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCC
Q psy14886 190 ITIAAHRNLQLRCSAHTEE-LLDVAYIWTHNGVRIGNMDL-NELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 190 ~~~~~g~~~~l~C~~~~~~-~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g 265 (505)
.....+..++|.|.+.+.. +..+.+.|.++|.. ..... ............+.|.+..-.......|+|.+.+...
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3344677899999999976 66799999998865 11000 0000001111123444443334555679999987654
No 372
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.12 E-value=0.0029 Score=45.57 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=42.8
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEE---ecCCCCCCEEEEEEEEecCC
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEI---TNASFADAGEYECVVKSTVG 265 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i---~~~~~~~~g~y~C~~~n~~g 265 (505)
.+..++|.|.+.+.-++.+.+.|.++|..+...... .......++++.+ ..+...+...|+|.+.+...
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~---~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVS---TELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCcee---cceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 567899999999988888999999999887553100 0111111112221 12233456689999877543
No 373
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.11 E-value=0.0022 Score=45.47 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=41.2
Q ss_pred CCCCCceEEEEEEec-cCC--CeEEEEECCEECcCCCCCCCCCC-cEEEECCeEEEEcCCCCCCCe-EEEEEEE
Q psy14886 1 MDNQADLTWTCEAFG-VPD--VTYSWFRNGELLNSETLPLEDQD-RYFIQDNVLTIRYLNPERDPA-MYQCRAK 69 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-~p~--~~~~W~~~~~~l~~~~~~~~~~~-~~~~~~~~L~i~~~~~~~d~G-~Y~C~~~ 69 (505)
+.+|..++|.|.+.+ .|. ..+.|++++..+......-.... ........+.+.. + .+|.| .|.|.|.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-t-reD~g~~fsC~A~ 83 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-T-IEDIGKVLVCRAK 83 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-c-hhhCCcEEEEEEE
Confidence 468999999999975 564 88999998877663321000000 0001223455555 4 56666 8999986
No 374
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=97.09 E-value=0.0044 Score=45.17 Aligned_cols=85 Identities=19% Similarity=0.370 Sum_probs=61.4
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceee-----EEEEcCCcccee
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI-----AVVRIPSEFYYT 459 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~L~p~~ 459 (505)
.|++.|.++.-.......++-.|++ +..++.+ ..|.|.|...+ ..|..-.......... +.+.-.+..-.+
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~--g~~~~l~-~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~ 81 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEP--GSEGNLP-TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFV 81 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEE--ESSSTST-CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSS
T ss_pred cCCCCCccCccCCCCCCcEEEEeeC--CCCCCCC-CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEE
Confidence 3567888888888888999999999 6665543 44999999987 6666544333222223 566666778899
Q ss_pred eEEEEEEEecCCCC
Q psy14886 460 EYEVKVQAINDVGP 473 (505)
Q Consensus 460 ~Y~~~v~a~n~~G~ 473 (505)
.|.|+|.|.|..|-
T Consensus 82 ~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 82 PYCIQVEATNALGS 95 (104)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EEEEEEEeccCCCc
Confidence 99999999998874
No 375
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.09 E-value=0.0036 Score=45.08 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=40.8
Q ss_pred CCceEEEEEEec-cC-CCeEEEEECCEECcCCCC---CCCC-CCcEEEECCeEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 4 QADLTWTCEAFG-VP-DVTYSWFRNGELLNSETL---PLED-QDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 4 G~~~~l~C~~~~-~p-~~~~~W~~~~~~l~~~~~---~~~~-~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
++.++|.|.+.| +| ...|+|.|||+. ..... .... .+.|.. .+.|.+..-. ......|+|.+.+..
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~-~s~L~v~~~~-w~~~~~ytC~V~H~~ 87 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTA-SSQLTVPASE-WKGKESFYCKVEHPS 87 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEE-EEEEEEeHHH-cCCCCcEEEEEEeCC
Confidence 567999999998 45 588999999997 32211 0111 233322 2456665433 223457999998754
No 376
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.06 E-value=0.0034 Score=44.87 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=44.0
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEe---cCCCCCCEEEEEEEEecC
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFADAGEYECVVKSTV 264 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~~~g~y~C~~~n~~ 264 (505)
.|....|.|.+.+.-++.+.+.|.++|..+. +.. ........+.++.+. .+...+...|+|.+.+..
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~---~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVE---QSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcE---ECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 4556789999999888899999999999875 321 111222223333322 234567778999997743
No 377
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.03 E-value=0.0026 Score=45.64 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=40.8
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCC----cccCCeeeecCCeEEEecCCCCCCEEEEEEEEecC
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN----ELETPNINIDGGLLEITNASFADAGEYECVVKSTV 264 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 264 (505)
.+...+|.|.+.+..+.++.+.|.++|..+...... ......+. ..+.|.+. ..+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~-~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQ-KFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEE-EEEEEEEE---CCCCCeEEEEEEeCC
Confidence 355679999999987778999999999887542110 00001111 11233333 345568999987753
No 378
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.03 E-value=0.0025 Score=45.92 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=40.9
Q ss_pred CCCceEEEEEEec-c-C-CCeEEEEECCEECcCCC-CCCCCCCcEEEECCeEEEEcCCCCCCCe-EEEEEEEcccC
Q psy14886 3 NQADLTWTCEAFG-V-P-DVTYSWFRNGELLNSET-LPLEDQDRYFIQDNVLTIRYLNPERDPA-MYQCRAKNQLK 73 (505)
Q Consensus 3 ~G~~~~l~C~~~~-~-p-~~~~~W~~~~~~l~~~~-~~~~~~~~~~~~~~~L~i~~~~~~~d~G-~Y~C~~~~~~~ 73 (505)
.++.++|.|.+.+ + | +..|+|.++|..-.... .....++.|.+ .+.|.+..-. ..+| .|+|.+.+...
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~-~S~L~v~~~~--W~~g~~ytC~V~H~~l 90 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSV-SSVLPGCAEE--WNKGEPFACTVTHPEG 90 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEE-EEEEEeCHHH--hcCCCeEEEEEECCCc
Confidence 4678999999998 4 5 58899999987511101 11112223332 3566665333 3444 59999987553
No 379
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.01 E-value=0.0028 Score=45.56 Aligned_cols=34 Identities=9% Similarity=-0.079 Sum_probs=28.2
Q ss_pred EEeeccEEEEEEeeecCCCCeEEEEEeCCEEecC
Q psy14886 192 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 225 (505)
Q Consensus 192 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~ 225 (505)
...+..++|.|.+.+.-++.+.+.|.++|..+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 3345678999999998778999999999988654
No 380
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.88 E-value=0.0059 Score=44.89 Aligned_cols=67 Identities=12% Similarity=0.211 Sum_probs=43.9
Q ss_pred CCCCCceEEEEEEeccC--C-CeEEEEECCE-ECc-------CCCCCCCCCCcEEEE------CCeEEEEcCCCCCCCeE
Q psy14886 1 MDNQADLTWTCEAFGVP--D-VTYSWFRNGE-LLN-------SETLPLEDQDRYFIQ------DNVLTIRYLNPERDPAM 63 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p--~-~~~~W~~~~~-~l~-------~~~~~~~~~~~~~~~------~~~L~i~~~~~~~d~G~ 63 (505)
|+.|+.++|.|.+++.. . -.++|+|... .+. .+.......+++... .-+|.|.+++ .+|++.
T Consensus 10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~-a~DTa~ 88 (115)
T cd05721 10 ASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR-ANQTDI 88 (115)
T ss_pred EcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC-HHHCeE
Confidence 46899999999997743 3 6789999421 210 011111133444332 2379999999 999999
Q ss_pred EEEEE
Q psy14886 64 YQCRA 68 (505)
Q Consensus 64 Y~C~~ 68 (505)
|.|..
T Consensus 89 Y~Ca~ 93 (115)
T cd05721 89 YFCKI 93 (115)
T ss_pred EEEEe
Confidence 99965
No 381
>KOG1480|consensus
Probab=96.86 E-value=0.00029 Score=67.78 Aligned_cols=170 Identities=23% Similarity=0.348 Sum_probs=98.9
Q ss_pred CCCCceEEEEEEeccC----CCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCe---EEEEE--EEccc
Q psy14886 2 DNQADLTWTCEAFGVP----DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA---MYQCR--AKNQL 72 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~p----~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G---~Y~C~--~~~~~ 72 (505)
..|..+.|.|.+...+ ...-.|..+.+........ .........-.+.|...+ .++.| .|.|. +....
T Consensus 37 i~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d--~tsg~~~~~~si~Isr~~-v~~~~~~~d~~cQc~a~~~~ 113 (909)
T KOG1480|consen 37 IKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTD--ETSGLGVREVSIDISRQQ-VETSGGPEDYWCQCVAWSDD 113 (909)
T ss_pred ecCCCccceecCCcccccccccChhhhcCccceeeeccC--cccceeEEeeeeeeehhh-hhcccCccceeeeeeeecCC
Confidence 3577888999986433 2344677654433211110 011111122344455544 44443 57554 55444
Q ss_pred CceEee-EEEEEEecCCCccCCCCCceEEeeCCCeEEEEee-cCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCC
Q psy14886 73 KTRYSS-AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVS 150 (505)
Q Consensus 73 ~~~~~~-~~l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~-~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~ 150 (505)
|...+. +.+.+....-.+...+ ....|..+..+.|.|. ..+.|...+.|++++..+.++..........+.+..+.
T Consensus 114 g~~~s~~a~vr~ay~rk~f~~~p--~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~ar 191 (909)
T KOG1480|consen 114 GTVKSRKATVRIAYLRKHFEQSP--VGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQAR 191 (909)
T ss_pred CcchhhhHHHHHHHHHHhhccCh--hhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchh
Confidence 422221 1122211111222222 2234777888889888 46678889999999998887666666677789999999
Q ss_pred CCCCEEEEEEEEcCCCceeee-EEEEE
Q psy14886 151 RDDSGIYSCTATNVHGMDESK-GRLIV 176 (505)
Q Consensus 151 ~~d~G~y~C~~~~~~g~~~~~-~~l~v 176 (505)
..|.|.|+|.|.|..+..... +.+.+
T Consensus 192 lsd~~nytc~a~ni~~~r~~~~~~v~v 218 (909)
T KOG1480|consen 192 LSDSGNYTCEATNIVAKRKSDPATVQV 218 (909)
T ss_pred hhhcccceeeeehhhccccccceEEEE
Confidence 999999999999877655443 44444
No 382
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.80 E-value=0.0045 Score=44.30 Aligned_cols=64 Identities=23% Similarity=0.475 Sum_probs=41.5
Q ss_pred CCeEEEEeec-CCCCCCeEEEEECCEEecCCCcE--EEeeC------CCEEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 104 GGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRR--KIFEN------GNLLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 104 g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~--~~~~~------~~l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
|+.+.|.|.+ .++|.+.|.|+.++..+...... ....+ ..|.+..-...+...++|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 6799999975 55688999999988776211000 11111 23666555556778999999986543
No 383
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.80 E-value=0.0051 Score=44.43 Aligned_cols=73 Identities=12% Similarity=0.258 Sum_probs=43.6
Q ss_pred ceEEEeeccEEEEEEeeec-CCCCeEEEEEeCCEEecCCCCCcccCCeeeecCC------eEEEecCCCCCCEEEEEEEE
Q psy14886 189 KITIAAHRNLQLRCSAHTE-ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVVK 261 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~~g~y~C~~~ 261 (505)
...+..++.++|.|.+.+. .++.+.+.|.+++......... ......++ .|.+..-...+.-.|+|.+.
T Consensus 8 ~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~----~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~ 83 (96)
T cd07696 8 PKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ----PPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT 83 (96)
T ss_pred HHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec----ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence 3345568889999999999 7778999999987433211100 01111222 33333323334567999998
Q ss_pred ecCC
Q psy14886 262 STVG 265 (505)
Q Consensus 262 n~~g 265 (505)
+...
T Consensus 84 H~~l 87 (96)
T cd07696 84 HPDL 87 (96)
T ss_pred CCCC
Confidence 7543
No 384
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.80 E-value=0.0046 Score=43.50 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=44.0
Q ss_pred eccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCcc---cCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL---ETPNINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 195 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
+..+.|.|.+.+..+..+.+.|.++|..+........ .........+.|.+. ......|+|.+.+....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 6789999999998778899999999988765321100 000111111234444 45566899999876543
No 385
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.64 E-value=0.018 Score=41.30 Aligned_cols=69 Identities=14% Similarity=0.300 Sum_probs=44.6
Q ss_pred ceEEeeCCCeEEE-Eeec-CCCCCCeEEEEECCEEecCCCcEEEeeCC------CEEEcCCCCCCCEEEEEEEEcCCC
Q psy14886 97 SETYAGEGGNVTI-FCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 97 ~~~~v~~g~~v~l-~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g 166 (505)
+...+.+|+.+.+ .|.+ .|.|.++|+|+.+..... ........++ .+.+......|.-.++|.+.+..-
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 4466788999988 8885 566888999998633221 1111222233 355555556677799999987643
No 386
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.61 E-value=0.017 Score=41.66 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=41.5
Q ss_pred eeccEEEEEEeeecCCCCeEEEEEeCCEEecCCCCCc--ccC-CeeeecCCeEEEecCCCCCCEEEEEEEEecC
Q psy14886 194 AHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE--LET-PNINIDGGLLEITNASFADAGEYECVVKSTV 264 (505)
Q Consensus 194 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 264 (505)
.++.++|.|.+.+.-+..+.+.|.++|.. ....... ... .......+.|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 45678999999998777899999999987 3321000 000 0011111234444333233567999998754
No 387
>PHA02633 hypothetical protein; Provisional
Probab=96.61 E-value=0.0076 Score=38.07 Aligned_cols=40 Identities=33% Similarity=0.377 Sum_probs=33.2
Q ss_pred eCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEeC
Q psy14886 140 ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 179 (505)
Q Consensus 140 ~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~~ 179 (505)
....|.|-++..+|+|.|.|...|..-....++.|.|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 3456999999999999999999988777777788887543
No 388
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.61 E-value=0.0052 Score=42.94 Aligned_cols=56 Identities=27% Similarity=0.455 Sum_probs=35.5
Q ss_pred eEEEEeecCCCCC--CeEEEEECCE--E---ec-------------CCCcEEEeeC-----CCEEEcCCCCCCCEEEEEE
Q psy14886 106 NVTIFCNPEAAPK--PKFVWKKDGN--I---IG-------------SGGRRKIFEN-----GNLLISPVSRDDSGIYSCT 160 (505)
Q Consensus 106 ~v~l~C~~~~~p~--~~i~W~~~g~--~---~~-------------~~~~~~~~~~-----~~l~i~~v~~~d~G~y~C~ 160 (505)
++.|.|....... ..+.|++... . +. ...++..... .+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 3688998765543 3788987331 1 10 0123333222 2499999999999999996
Q ss_pred E
Q psy14886 161 A 161 (505)
Q Consensus 161 ~ 161 (505)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 389
>PHA03042 CD47-like protein; Provisional
Probab=96.46 E-value=0.011 Score=50.00 Aligned_cols=67 Identities=13% Similarity=0.323 Sum_probs=45.5
Q ss_pred CCceEEEEEEecc-----CCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEee
Q psy14886 4 QADLTWTCEAFGV-----PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSS 78 (505)
Q Consensus 4 G~~~~l~C~~~~~-----p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~ 78 (505)
.+++.+.|.++.. ....+.|.++++.+-.. +.. ..++|.+.... .-.|+|+|+|.+........
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~-------n~t--n~aSL~~~f~~--~l~GNYTCEv~~l~n~gk~~ 99 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKK-------NNT--NTSSLKFNFSK--NLSGNYTCEAINKFNKIKNT 99 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEe-------cCC--cceEEEEeccc--cCCCceeEEEeecccCccEE
Confidence 4789999999652 25679999999877522 111 23567777655 67999999998765544433
Q ss_pred EEE
Q psy14886 79 AQL 81 (505)
Q Consensus 79 ~~l 81 (505)
+.+
T Consensus 100 IeL 102 (286)
T PHA03042 100 IEL 102 (286)
T ss_pred EEE
Confidence 333
No 390
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.32 E-value=0.7 Score=40.90 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=75.9
Q ss_pred CceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCC--CCCCCCCceeeee--c--cccccEEEEEEeCCccc
Q psy14886 341 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA--DKPYQAPSRIGGG--G--GKIGDLSISWEPLPREK 414 (505)
Q Consensus 341 ~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~--~~p~~~P~~~~~~--~--~~~~~v~l~W~~~~~~~ 414 (505)
+...+.+.+ +.++..|.+++.+.|....... .-.....+.+ ..-|.-|.+..+. . .+-++++|.|.+ ..+
T Consensus 126 ~~~~f~l~~-~~~g~~Yliri~~~~~~e~~~~-~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~--s~d 201 (300)
T PF10179_consen 126 GLRHFRLSG-VKPGERYLIRIQISNSDEGPST-FKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLG--SPD 201 (300)
T ss_pred ceEEEEECC-CCCCCeEEEEEEccCCCCCceE-EEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEec--CCC
Confidence 444555555 9999999999987776443221 1100012222 2223345555553 3 456899999997 333
Q ss_pred cCCCCceEEEEEEEcCCC--------------------CcEEEEee--ecCc------eeeEEEEcCCccceeeEEEEEE
Q psy14886 415 QNAPNIYYKIFWRKKNDT--------------------EFQSETLK--EYGN------VGIAVVRIPSEFYYTEYEVKVQ 466 (505)
Q Consensus 415 ~~~~i~~Y~v~~~~~~~~--------------------~~~~~~~~--~~~~------~~~~~~~l~~L~p~~~Y~~~v~ 466 (505)
.. ..|=|..++.... ....+... ...| ......+|.+|+||+.|.|.|.
T Consensus 202 ~~---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~ 278 (300)
T PF10179_consen 202 RS---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVY 278 (300)
T ss_pred CC---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEE
Confidence 22 4566655544311 01111221 1111 1224557999999999999999
Q ss_pred EecCCCCCCCCceEEEee
Q psy14886 467 AINDVGPGPESEVVTIWH 484 (505)
Q Consensus 467 a~n~~G~g~~s~~~~~~t 484 (505)
|.-..|.+-+=....++|
T Consensus 279 ~~~~~G~sl~Y~s~~VkT 296 (300)
T PF10179_consen 279 VNGPSGQSLPYRSKWVKT 296 (300)
T ss_pred EecCCCceeecceEEEEe
Confidence 987777654433333333
No 391
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.29 E-value=0.028 Score=40.47 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=39.8
Q ss_pred CCeEEEEeec-CCCCCCeEEEEECCEEecCCCcEEEeeCC------CEEEcCCCCCCCEEEEEEEEcCCCcee
Q psy14886 104 GGNVTIFCNP-EAAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGMDE 169 (505)
Q Consensus 104 g~~v~l~C~~-~~~p~~~i~W~~~g~~~~~~~~~~~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g~~~ 169 (505)
.....+.|.+ .|.|.++|+|+++..... ........++ .|.+.....+|+..|+|.+.+..-...
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~ 86 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP 86 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 3456889997 567999999999721110 0111111222 366655556677799999998764433
No 392
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.10 E-value=0.02 Score=41.10 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=40.2
Q ss_pred CeEEEEeecC-CCCCCeEEEEECCEEecCCCcEEEeeCC------CEEEcCCCCCCCEEEEEEEEcCCCceeeeE
Q psy14886 105 GNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGMDESKG 172 (505)
Q Consensus 105 ~~v~l~C~~~-~~p~~~i~W~~~g~~~~~~~~~~~~~~~------~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~ 172 (505)
..+.+.|.+. +.|.+.|+|+++...... .......++ .|.+.....+|+..|+|.+.+........+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~ 89 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL 89 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 3568999865 668889999987221110 111111122 366655556677799999998754444333
No 393
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.05 E-value=0.011 Score=44.48 Aligned_cols=75 Identities=21% Similarity=0.213 Sum_probs=43.4
Q ss_pred eeCCCeEEEEeecCCC-----CCCeEEEEECCEEecC--CCcEEE-e-------------eCCCEEEcCCCCCCCEEEEE
Q psy14886 101 AGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGS--GGRRKI-F-------------ENGNLLISPVSRDDSGIYSC 159 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~-----p~~~i~W~~~g~~~~~--~~~~~~-~-------------~~~~l~i~~v~~~d~G~y~C 159 (505)
..-+++|.|.|.+... +...|.|..+|..+.. +..... . .+.+|.+.....- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 4567899999998652 2347999999987642 111111 0 1123666654433 799999
Q ss_pred EEEcCCCceeeeEEEEE
Q psy14886 160 TATNVHGMDESKGRLIV 176 (505)
Q Consensus 160 ~~~~~~g~~~~~~~l~v 176 (505)
.+.......+..+.|..
T Consensus 103 eVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 103 EVTELSREGETTIELKY 119 (130)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEecCCCceEEEEEEE
Confidence 99887766666666655
No 394
>PHA02982 hypothetical protein; Provisional
Probab=95.90 E-value=0.07 Score=43.22 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=67.7
Q ss_pred CCCCceEEEEEEecc-CCCeEEEEECCE-ECcCC-----CC---CC---CCCCcE--EE--ECCeEEEEcCCCCCCCeEE
Q psy14886 2 DNQADLTWTCEAFGV-PDVTYSWFRNGE-LLNSE-----TL---PL---EDQDRY--FI--QDNVLTIRYLNPERDPAMY 64 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~-p~~~~~W~~~~~-~l~~~-----~~---~~---~~~~~~--~~--~~~~L~i~~~~~~~d~G~Y 64 (505)
..|++|.|.|..... .-....|.+++. .|... .+ .. .-...+ +. ..++|+|.++. ....|-|
T Consensus 37 ~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~-i~N~GCY 115 (251)
T PHA02982 37 TVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPD-PQNLGCF 115 (251)
T ss_pred cCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCC-cccCCce
Confidence 368999999997432 235678998543 22211 00 00 001111 22 35799999999 9999999
Q ss_pred EEEEEcccCce-EeeEEEEEEecCCCccCCCCCceEEeeCC-CeEEEEeecCCCCCCeEEEEECCEE
Q psy14886 65 QCRAKNQLKTR-YSSAQLRVLTLKPSFKKRPLESETYAGEG-GNVTIFCNPEAAPKPKFVWKKDGNI 129 (505)
Q Consensus 65 ~C~~~~~~~~~-~~~~~l~v~~~~p~~~~~~~~~~~~v~~g-~~v~l~C~~~~~p~~~i~W~~~g~~ 129 (505)
+|.+....+.. +....+.|...- ......++ ..-.+.|-+......-..|.-+|..
T Consensus 116 tc~~ks~~~k~E~c~kCl~V~~~~---------V~~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 116 TCEAKDAEGKEETCEKCLEIQKED---------ILYVVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred EEEEecCCCchheeheeeeEecce---------EEEEEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99998755433 324455553210 11112233 3446789875554333489888764
No 395
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=95.89 E-value=0.1 Score=38.75 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=53.4
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEe--eeccccceeeeecCceeeEEeeec-cCC
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV--SEHVIGKEVDRYTGRKEASIENVL-VPW 354 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~L-~~~ 354 (505)
...+|.++++... .-...|+|+++... .+-..|.|+|+......|..+ ...+. ....-+...+ ...
T Consensus 21 ~lp~P~nv~~~s~-nf~~iL~W~~~~~~-~~~~~ytVq~~~~~~~~W~~v~~C~~i~---------~~~Cdlt~~~~~~~ 89 (107)
T PF01108_consen 21 SLPAPQNVTVDSV-NFKHILRWDPGPGS-PPNVTYTVQYKKYGSSSWKDVPGCQNIT---------ETSCDLTDETSDPS 89 (107)
T ss_dssp SGSSCEEEEEEEE-TTEEEEEEEESTTS-SSTEEEEEEEEESSTSCEEEECCEEEES---------SSEEECTTCCTTTT
T ss_pred cCCCCCeeEEEEE-CCceEEEeCCCCCC-CCCeEEEEEEEecCCcceeeccceeccc---------ccceeCcchhhcCc
Confidence 3446677777555 45578999985443 355789999997778899987 33332 1122222212 367
Q ss_pred ceeEEEEEEEcCCCcC
Q psy14886 355 STYEFKVIAGNELGYG 370 (505)
Q Consensus 355 ~~y~~~v~a~n~~G~~ 370 (505)
..|.+||+|.-....|
T Consensus 90 ~~Y~~rV~A~~~~~~S 105 (107)
T PF01108_consen 90 ESYYARVRAEVGNQTS 105 (107)
T ss_dssp SEEEEEEEEEETTEEE
T ss_pred CCEEEEEEEEeCCccC
Confidence 8899999997665443
No 396
>PHA03269 envelope glycoprotein C; Provisional
Probab=95.86 E-value=1.6 Score=40.84 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=57.6
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCC-C--ceeeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEe
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVH-G--MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTH 218 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~-g--~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~ 218 (505)
.|.|.++...++|.|.=++.+.. + .....+.+.+...|.+.... -.+..|+...-.|.+..+ |.....+.|+.
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p---~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG---DPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 39999999999999986654322 2 22344666766666543332 346789999999999875 45568899999
Q ss_pred CCEEecC
Q psy14886 219 NGVRIGN 225 (505)
Q Consensus 219 ~~~~~~~ 225 (505)
++..+..
T Consensus 367 ng~~V~~ 373 (566)
T PHA03269 367 NFGNIGK 373 (566)
T ss_pred CCcccCc
Confidence 9888874
No 397
>KOG1480|consensus
Probab=95.85 E-value=0.004 Score=60.30 Aligned_cols=77 Identities=25% Similarity=0.453 Sum_probs=57.9
Q ss_pred CCCCCceEEEEEE-eccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-e
Q psy14886 1 MDNQADLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-S 78 (505)
Q Consensus 1 v~~G~~~~l~C~~-~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~ 78 (505)
|.++..+.|.|.. .+.|...++|+|++..+.. +.+-+......|.|..+. ..|.|+|+|.|.|..+.... .
T Consensus 141 V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p------d~n~~~~~d~~li~~~ar-lsd~~nytc~a~ni~~~r~~~~ 213 (909)
T KOG1480|consen 141 VQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP------DANVIRASDHNLIISQAR-LSDSGNYTCEATNIVAKRKSDP 213 (909)
T ss_pred ecccccccccccCcccchhhhhhccccCCCCCc------cccchhhhcCCccccchh-hhhcccceeeeehhhccccccc
Confidence 4567888999997 4678899999999988773 233334456789999999 99999999999987665443 3
Q ss_pred EEEEEE
Q psy14886 79 AQLRVL 84 (505)
Q Consensus 79 ~~l~v~ 84 (505)
+.+.++
T Consensus 214 ~~v~vy 219 (909)
T KOG1480|consen 214 ATVQVY 219 (909)
T ss_pred eEEEEE
Confidence 444443
No 398
>PHA03271 envelope glycoprotein C; Provisional
Probab=95.78 E-value=1.1 Score=40.86 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=70.6
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCCCce--eeeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEeC
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVHGMD--ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHN 219 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~ 219 (505)
.|.|.++...++|.|+-...+..... .+...+.+...|+.+... .-.+..|+...-.|.+..+ |+....+.|+.+
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~--a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVL--APPVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 38899999999997765555533322 233455555544433222 2246789999999999875 455688999999
Q ss_pred CEEecCCCCCcccCC------eeeecCCeEEEecCCCCCCEEEEEEEEecCCc
Q psy14886 220 GVRIGNMDLNELETP------NINIDGGLLEITNASFADAGEYECVVKSTVGK 266 (505)
Q Consensus 220 ~~~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~ 266 (505)
|........ ..... .....-+++.+.....+..-..+|.+.-..+.
T Consensus 286 G~~V~~~~~-rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~ 337 (490)
T PHA03271 286 GNIATPRKD-RDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGD 337 (490)
T ss_pred CccccCccc-cceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCC
Confidence 988865331 11111 00011123333333233444789999765543
No 399
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.72 E-value=0.046 Score=38.98 Aligned_cols=63 Identities=21% Similarity=0.264 Sum_probs=39.8
Q ss_pred eeCCCeEEEEeecCCC-CC--CeEEEEECCEEecCCCcEEE-------eeCCCEEEcCCCCCCCE-EEEEEEEcC
Q psy14886 101 AGEGGNVTIFCNPEAA-PK--PKFVWKKDGNIIGSGGRRKI-------FENGNLLISPVSRDDSG-IYSCTATNV 164 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~-p~--~~i~W~~~g~~~~~~~~~~~-------~~~~~l~i~~v~~~d~G-~y~C~~~~~ 164 (505)
+.+|..+++.|.+.+. |. ..+.|++....+....-... .....+++... ++|.| .|+|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 5789999999998654 54 58999987665543221110 01123556554 55555 999999743
No 400
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.71 E-value=0.016 Score=48.88 Aligned_cols=47 Identities=26% Similarity=0.587 Sum_probs=40.7
Q ss_pred CCeEEEEE-CCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 118 KPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 118 ~~~i~W~~-~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
.|.+.|.. +|+.+...++..+...|.|.+.+...+++|.|+|.....
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 57899998 566777777888899999999999999999999998754
No 401
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.68 E-value=0.016 Score=43.69 Aligned_cols=82 Identities=12% Similarity=0.226 Sum_probs=47.3
Q ss_pred eeccEEEEEEeee---cCCCCeEEEEEeCCEEecCCCCCccc----------CCeeeecCCeEEEecCCCCCCEEEEEEE
Q psy14886 194 AHRNLQLRCSAHT---EELLDVAYIWTHNGVRIGNMDLNELE----------TPNINIDGGLLEITNASFADAGEYECVV 260 (505)
Q Consensus 194 ~g~~~~l~C~~~~---~~~~~~~~~w~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~~~g~y~C~~ 260 (505)
=++++.|.|.+.. ...+.+.+.|..++..+...+..... -..+...+.+|.+...+.- .|+|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 3567899999865 22345778899988876432211000 0111123345777664433 89999999
Q ss_pred EecCCcEEEEEEEEEc
Q psy14886 261 KSTVGKISTKTTVIVE 276 (505)
Q Consensus 261 ~n~~g~~~~~~~l~v~ 276 (505)
.....+.+..+.|..+
T Consensus 105 t~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 105 TELSREGETTIELKYR 120 (130)
T ss_dssp EETTEEEEEEEEEEE-
T ss_pred EecCCCceEEEEEEEE
Confidence 9988888888877764
No 402
>PHA03270 envelope glycoprotein C; Provisional
Probab=95.60 E-value=1.3 Score=40.80 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=59.8
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCcee--eeEEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEe
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMDE--SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTH 218 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~~--~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~ 218 (505)
..|.|..++...+|.|+=...+..+... ..+.+.....|.+.... -.+..|+...-.|.+..+ |.....+.|+.
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP---HAVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 3599999999999999998776655333 33556665566644332 246789999999999875 44568899999
Q ss_pred CCEEecC
Q psy14886 219 NGVRIGN 225 (505)
Q Consensus 219 ~~~~~~~ 225 (505)
++..+..
T Consensus 259 ng~~V~~ 265 (466)
T PHA03270 259 GGDEVFA 265 (466)
T ss_pred CCccccC
Confidence 9998864
No 403
>KOG4597|consensus
Probab=95.60 E-value=0.021 Score=52.24 Aligned_cols=83 Identities=13% Similarity=0.059 Sum_probs=60.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE---CCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR---NGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~---~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~ 77 (505)
|..|++..++|-+.|.+.+.|.|.+ |+..+.+..... ..+-...+...|.|-+.. ..|+|.|+|.+.+.+|..+.
T Consensus 208 vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~-~e~p~vtstcql~ic~ew-q~~a~w~tCs~rcg~g~~~r 285 (560)
T KOG4597|consen 208 VGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQT-VENPVVTSTCQLVICNEW-QADAGWYTCSARCGAGFLRR 285 (560)
T ss_pred cccchhhcccccccCCcCceeeeehhhccccceeecCccc-cCCcceeeeeeEEEcchh-hcCCCceeeccccccceeec
Confidence 4578999999999999999999987 554444321111 011111234679999999 99999999999999999888
Q ss_pred eEEEEEEe
Q psy14886 78 SAQLRVLT 85 (505)
Q Consensus 78 ~~~l~v~~ 85 (505)
++.+.+..
T Consensus 286 dv~c~s~~ 293 (560)
T KOG4597|consen 286 DVPCSSVK 293 (560)
T ss_pred cceeeeec
Confidence 88777664
No 404
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.56 E-value=0.023 Score=48.04 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=36.4
Q ss_pred CCCeEEEEECC-EECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 17 PDVTYSWFRNG-ELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 17 p~~~~~W~~~~-~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
.+|.+.|..++ ..+. ...++.+ ..+.|.+.+.. .+++|.|+|....
T Consensus 11 iDP~y~W~GP~g~~l~-------gn~~~nIT~TG~L~~~~F~-esmSG~YTCtLsY 58 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLS-------GNSYVNITETGKLMFKNFQ-ESMSGSYTCTLSY 58 (271)
T ss_pred CCCceEEECCCCcccC-------CCCeEEEccCceEEeeccc-cccCCceEEEEEE
Confidence 37899999954 4444 4456665 56889999999 9999999999874
No 405
>PHA03273 envelope glycoprotein C; Provisional
Probab=95.53 E-value=0.83 Score=42.34 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=73.5
Q ss_pred CEEEcCCCCCCCEEEEEEEEcCCCceeee--EEEEEEeCCeeeeeCCCceEEEeeccEEEEEEeeec-CCCCeEEEEEeC
Q psy14886 143 NLLISPVSRDDSGIYSCTATNVHGMDESK--GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE-ELLDVAYIWTHN 219 (505)
Q Consensus 143 ~l~i~~v~~~d~G~y~C~~~~~~g~~~~~--~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~~w~~~ 219 (505)
.|.|..+...++|.|+=...+..+..... +.+.....|.+.... ..+..|+...-.|.+..+ |.....+.|+.+
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV---HPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 39999999999999986655544433333 444445566543332 346789999999999875 455688999999
Q ss_pred CEEecCCCCCcccCC----eeeecCCeEEEecCC-CCCCEEEEEEEEecCCc
Q psy14886 220 GVRIGNMDLNELETP----NINIDGGLLEITNAS-FADAGEYECVVKSTVGK 266 (505)
Q Consensus 220 ~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~-~~~~g~y~C~~~n~~g~ 266 (505)
+..+........... ......+++.+.... .+..-..+|.+.-....
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~ 327 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDE 327 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCC
Confidence 999873222111111 111112334444322 23345789998654443
No 406
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=95.31 E-value=0.15 Score=37.24 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=60.0
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCcee
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y 357 (505)
+|+.|..+.+........+.-|+++..++.+.. |.+.|...+ ..|..+............ ......-..+..-...|
T Consensus 7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~l~~~-y~L~Y~~~~-~~~~eCp~~~~~~~ns~~-~~~C~F~~~~t~lf~~y 83 (104)
T PF09067_consen 7 PPEKPENLKCFSREMETFTCFWEPGSEGNLPTN-YTLFYKKEG-EEWKECPDYSTSGPNSTV-RHICYFPKSDTSLFVPY 83 (104)
T ss_dssp HCCCCEEEEEEBSSSS-EEEEEEEESSSTSTCE-EEEEEEETT-SEEEEESESSTTETTEEE-EEEEEE-CCGCSSSSEE
T ss_pred CCCCCccCccCCCCCCcEEEEeeCCCCCCCCCc-EEEEEEeCC-CCCccCCCeEecCCCCce-eEEEEcCCCCeEEEEEE
Confidence 577888888888888999999999887665544 999999887 778877543321000000 00012222346778899
Q ss_pred EEEEEEEcCCCcC
Q psy14886 358 EFKVIAGNELGYG 370 (505)
Q Consensus 358 ~~~v~a~n~~G~~ 370 (505)
.++|.|.|..|..
T Consensus 84 ~i~V~a~~~~~~~ 96 (104)
T PF09067_consen 84 CIQVEATNALGSI 96 (104)
T ss_dssp EEEEEEEETTEEE
T ss_pred EEEEEeccCCCcE
Confidence 9999999998753
No 407
>PHA03042 CD47-like protein; Provisional
Probab=95.08 E-value=0.099 Score=44.46 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=46.8
Q ss_pred eeCCCeEEEEeecCCC-----CCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 101 AGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~-----p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
..-++++.+.|.++.- ....+.|..+|..+...+.. ...+|.+... ..-.|.|+|.|.+..........|.
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEecc-ccCCCceeEEEeecccCccEEEEEE
Confidence 4467899999998653 34589999999877532221 1234555433 3458999999987665555555444
Q ss_pred E
Q psy14886 176 V 176 (505)
Q Consensus 176 v 176 (505)
-
T Consensus 104 ~ 104 (286)
T PHA03042 104 Y 104 (286)
T ss_pred E
Confidence 3
No 408
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.05 E-value=0.18 Score=37.27 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=42.1
Q ss_pred eEEeeCCCeEEEEeecCCCC--C-CeEEEEE--CCEE--e---c--------CCCcEEEeeCC-----CEEEcCCCCCCC
Q psy14886 98 ETYAGEGGNVTIFCNPEAAP--K-PKFVWKK--DGNI--I---G--------SGGRRKIFENG-----NLLISPVSRDDS 154 (505)
Q Consensus 98 ~~~v~~g~~v~l~C~~~~~p--~-~~i~W~~--~g~~--~---~--------~~~~~~~~~~~-----~l~i~~v~~~d~ 154 (505)
...+..|+.++|.|.+.|.. . -.+.|.| +|.. + . ...++....+. +|+|.+++.+|.
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 35677889999999987653 3 4788987 3310 0 0 11222222111 499999999999
Q ss_pred EEEEEEE
Q psy14886 155 GIYSCTA 161 (505)
Q Consensus 155 G~y~C~~ 161 (505)
+.|.|..
T Consensus 87 a~Y~Ca~ 93 (115)
T cd05721 87 DIYFCKI 93 (115)
T ss_pred eEEEEEe
Confidence 9999975
No 409
>KOG4367|consensus
Probab=95.05 E-value=0.027 Score=50.60 Aligned_cols=79 Identities=24% Similarity=0.243 Sum_probs=61.7
Q ss_pred eCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcC
Q psy14886 291 HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG 370 (505)
Q Consensus 291 ~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~ 370 (505)
...++++.|+.|...+.+..+|.++......+.+..+.. +..+...+.+|.-++.|.-||.|.|+.|.+
T Consensus 451 ~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~frevy~-----------g~etmctvdglhfns~y~arvka~n~tg~s 519 (699)
T KOG4367|consen 451 HNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYV-----------GKETMCTVDGLHFNSTYNARVKAFNKTGVS 519 (699)
T ss_pred cCCceEEEeecCCCCCCCCcceEEEeecCCCCceeEEEe-----------cCceeEEecceecchhHHHHHHHhhccCCC
Confidence 567899999988777888999999988776665555433 444555566699999999999999999999
Q ss_pred CCCCCCCCccC
Q psy14886 371 EPSSPSPQYNT 381 (505)
Q Consensus 371 ~~s~~~~~~~t 381 (505)
+.|... ..+|
T Consensus 520 ~ys~tl-~lqt 529 (699)
T KOG4367|consen 520 PYSKTL-VLQT 529 (699)
T ss_pred ccccee-Eeee
Confidence 988764 3344
No 410
>KOG4228|consensus
Probab=94.68 E-value=0.19 Score=51.82 Aligned_cols=202 Identities=19% Similarity=0.123 Sum_probs=116.4
Q ss_pred EEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccc
Q psy14886 255 EYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334 (505)
Q Consensus 255 ~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~ 334 (505)
.|+|.+....|.......+.|..-|..+....++......+.+.|..+.. ....|.+.++...+. .........
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t---~~~~y~v~~~~~~s~-~~~~~~~~~-- 74 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST---WPNYYQVIFKALSSG-YGYIDVDLT-- 74 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC---ChhhhheeeeEeccC-cceeeccce--
Confidence 38999988888888888888877777777777778888889999986543 455666666655443 211111110
Q ss_pred eeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCCCC---------------------------------------
Q psy14886 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP--------------------------------------- 375 (505)
Q Consensus 335 ~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~--------------------------------------- 375 (505)
...-...+.+.+.+.+ .+.|..|.+.++.+
T Consensus 75 ---------~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (1087)
T KOG4228|consen 75 ---------TRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATVG 143 (1087)
T ss_pred ---------eecccCCCCCcchhhh--hhcccccccccccccCCccccccccccccchhhhhhhhhhhccCccccccccc
Confidence 0000111223333333 44444444433221
Q ss_pred --------------CCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeee
Q psy14886 376 --------------SPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE 441 (505)
Q Consensus 376 --------------~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~ 441 (505)
...+.+....|.+++ ...+.+.+++.|.++ ....+..|++.+...+...........
T Consensus 144 ~~~~~~~~~~~~~t~i~i~~~~~~p~~~~-----~~~~~~~it~~w~~~----~~~~~~~ykl~~~~~d~~~~~~v~~~~ 214 (1087)
T KOG4228|consen 144 PLAIASPGLGPPSTYIQITTNANSPIQPG-----EEEEYTTITGSWSPP----HAVSLDTYKLLHLDPDTGYEISVTLTP 214 (1087)
T ss_pred ccccCCcccCCCCceEEEeccCCCCCCCC-----cceEEEEEEecCCCC----CcccchhhhhhhcCCcccceeeeeccC
Confidence 112333333333322 334567889999773 334477888877766544333333332
Q ss_pred cCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 442 YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 442 ~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
. ......++.|...|.++..+....+.+.....+.+++...
T Consensus 215 ~-----~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~~s 255 (1087)
T KOG4228|consen 215 P-----GSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQLQS 255 (1087)
T ss_pred C-----CCCcccCCCCcccccccccCccccccCCCCcceEEEehhh
Confidence 2 2334456777888888888888888887777777766543
No 411
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.63 E-value=0.44 Score=42.98 Aligned_cols=121 Identities=17% Similarity=0.287 Sum_probs=72.3
Q ss_pred CCCCCceEEEEEEe--ccC-CCeEEEEECCEECcCC----------CCCCCCCCcEEE----------ECCeEEEEcCCC
Q psy14886 1 MDNQADLTWTCEAF--GVP-DVTYSWFRNGELLNSE----------TLPLEDQDRYFI----------QDNVLTIRYLNP 57 (505)
Q Consensus 1 v~~G~~~~l~C~~~--~~p-~~~~~W~~~~~~l~~~----------~~~~~~~~~~~~----------~~~~L~i~~~~~ 57 (505)
++.|..+.|.|.++ |+. -...+|+.-|-++..- .........+.+ ..++|+|.++.
T Consensus 276 ~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~- 354 (500)
T PHA02914 276 LEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH- 354 (500)
T ss_pred eccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE-
Confidence 46799999999996 333 4678999866544311 011111122222 24799999999
Q ss_pred CCCCeEEEEEEEcccCceEeeEEEEEEecCCCccCCCCCceEEeeCCC-eEEEEeecCCC--CCCeEEEEECCEEec
Q psy14886 58 ERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGG-NVTIFCNPEAA--PKPKFVWKKDGNIIG 131 (505)
Q Consensus 58 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~~~~~~~~v~~g~-~v~l~C~~~~~--p~~~i~W~~~g~~~~ 131 (505)
.+.+|-|+|.|....-..+....+.|... ..+ ....+|+ .-...|-+... .++.|.|..+|....
T Consensus 355 I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-V~f--------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 355 INNAGCYEAQAFMGKFKEECRHCFKVADH-VFF--------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred EEcCCceEEEEecCcchhhhhhheEeccE-EEE--------EEEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 99999999999865333333334444320 000 1122333 34567887554 345799999886553
No 412
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.15 E-value=4.4 Score=36.92 Aligned_cols=124 Identities=16% Similarity=0.244 Sum_probs=69.7
Q ss_pred ceEEEeeccEEEEEEeeecC-CCCeEEEEEeCCEEecCC------------CCCcccCCe--------eeecCCeEEEec
Q psy14886 189 KITIAAHRNLQLRCSAHTEE-LLDVAYIWTHNGVRIGNM------------DLNELETPN--------INIDGGLLEITN 247 (505)
Q Consensus 189 ~~~~~~g~~~~l~C~~~~~~-~~~~~~~w~~~~~~~~~~------------~~~~~~~~~--------~~~~~~~l~i~~ 247 (505)
...+..|..+.|.|...--. ..--...|...|.++.+. +........ .....++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 45667799999999876411 111234587766554421 111111111 112357899999
Q ss_pred CCCCCCEEEEEEEEecCCcEEEEEEEEEcCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEE-EeCCCCCeEE
Q psy14886 248 ASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIA-RTNWNSTWFN 326 (505)
Q Consensus 248 ~~~~~~g~y~C~~~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~-~~~~~~~w~~ 326 (505)
+.-...|=|.|.|....-.....-.|.| .+.|.+.|.--...-..+.-|..++ ....+..|..
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V----------------~d~V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkv 416 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKV----------------ADHVFFKWNTEGDNETKVACYAAQYDMQPFSILWKS 416 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEe----------------ccEEEEEEEeccCceEEEEEEEEecccCCceeEEEE
Confidence 9989999999998765333333333333 3578888973322223344455566 3333466766
Q ss_pred ee
Q psy14886 327 VS 328 (505)
Q Consensus 327 ~~ 328 (505)
..
T Consensus 417 nG 418 (500)
T PHA02914 417 NG 418 (500)
T ss_pred cc
Confidence 43
No 413
>PHA02982 hypothetical protein; Provisional
Probab=93.60 E-value=1.6 Score=35.75 Aligned_cols=115 Identities=15% Similarity=0.283 Sum_probs=66.6
Q ss_pred EEeeCCCeEEEEeecCCCC-CCeEEEEECC-EEecC--C----------------CcEEE---eeCCCEEEcCCCCCCCE
Q psy14886 99 TYAGEGGNVTIFCNPEAAP-KPKFVWKKDG-NIIGS--G----------------GRRKI---FENGNLLISPVSRDDSG 155 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p-~~~i~W~~~g-~~~~~--~----------------~~~~~---~~~~~l~i~~v~~~d~G 155 (505)
+....++.|.|.|...... -....|.++. ..+.. . ..+.. ...++|+|.++..+..|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 4456799999999853332 2378898743 33321 0 00111 12346999999999999
Q ss_pred EEEEEEEcCCCceee-eEEEEEEeCCeeeeeCCCceEEEee-ccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 156 IYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAH-RNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 156 ~y~C~~~~~~g~~~~-~~~l~v~~~p~~~~~~~~~~~~~~g-~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
-|+|.+....+..+. .--|.|+...... ....+ ....+.|-+-....+-+ .|.-.|..
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~~dvp--~W~V~GVv 173 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKHGDVP--RFIVAGIV 173 (251)
T ss_pred ceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEeccCCCc--cEEEeeEE
Confidence 999999986654443 4445552221111 11223 34567887766544322 58777654
No 414
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=93.27 E-value=1.7 Score=38.51 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=22.7
Q ss_pred eeEEEEcCCccceeeEEEEEEEecCCC
Q psy14886 446 GIAVVRIPSEFYYTEYEVKVQAINDVG 472 (505)
Q Consensus 446 ~~~~~~l~~L~p~~~Y~~~v~a~n~~G 472 (505)
....+.|+++.||..|.+++.+.|...
T Consensus 126 ~~~~f~l~~~~~g~~Yliri~~~~~~e 152 (300)
T PF10179_consen 126 GLRHFRLSGVKPGERYLIRIQISNSDE 152 (300)
T ss_pred ceEEEEECCCCCCCeEEEEEEccCCCC
Confidence 456788999999999999999887544
No 415
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=93.16 E-value=0.99 Score=40.05 Aligned_cols=162 Identities=11% Similarity=-0.009 Sum_probs=93.2
Q ss_pred eEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCcCCCC
Q psy14886 294 SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373 (505)
Q Consensus 294 ~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s 373 (505)
.+.+-|.+.. +-++-.|.|+....+.. ..+...-.. +...-.+..++.++..|++++.+.+..+.-+.+
T Consensus 85 ~~~~~w~~~~--d~~~~~Y~i~~~~gD~~-f~r~~~~~n--------~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs 153 (343)
T COG3401 85 SVKVFWSPHP--DVSVGKYIIQRQNGDGK-FLRTGLVKN--------RLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS 153 (343)
T ss_pred eeeecccccC--CCCCCeEEEEEecCchh-hhhhhHHHh--------ccchhheecccccccceeeeEEeecccccceee
Confidence 4788998643 34456788876654433 333222221 222334455699999999999999888776555
Q ss_pred CCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcC
Q psy14886 374 SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 453 (505)
Q Consensus 374 ~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 453 (505)
.. .+...+...|..-.++++.....+.+.|+|+.++. +-.|+|.-...+..+.. .......|. ......
T Consensus 154 f~--gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~------~~yy~IY~~~~g~e~~~-~ia~t~~n~--y~d~~e 222 (343)
T COG3401 154 FT--GVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEA------EDYYRIYASDSGNEEYG-FIAQTTENS--YYDVKE 222 (343)
T ss_pred ee--eeecccccCCceeeeeeeecCCCCcceeeccCccc------cceEEEeccCCcccccc-ceeeccccc--hhhhhh
Confidence 32 33333443333445566667778899999987333 22677755444433322 222221211 122233
Q ss_pred CccceeeEEEEEEEec-CCCCCCCCce
Q psy14886 454 SEFYYTEYEVKVQAIN-DVGPGPESEV 479 (505)
Q Consensus 454 ~L~p~~~Y~~~v~a~n-~~G~g~~s~~ 479 (505)
+| |..|...|.++. ..+.|+.++.
T Consensus 223 gl--ga~~~y~VTtVd~~~~es~lp~~ 247 (343)
T COG3401 223 GL--GAVEYYKVTTVDNTGFESDLPNE 247 (343)
T ss_pred cc--CceeEEEEEEEcCCcceeccCCc
Confidence 34 677777788876 4556777763
No 416
>PLN02533 probable purple acid phosphatase
Probab=93.16 E-value=1.6 Score=41.65 Aligned_cols=90 Identities=14% Similarity=0.054 Sum_probs=55.8
Q ss_pred CCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeee--------cCceeeEEEEcCCcc
Q psy14886 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE--------YGNVGIAVVRIPSEF 456 (505)
Q Consensus 385 ~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~L~ 456 (505)
..+..|..+++.-...+++.|+|... .. .. =.|+|....+..+....... ..........|++|+
T Consensus 39 ~~~~~P~qvhls~~~~~~m~V~W~T~--~~-~~----~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~ 111 (427)
T PLN02533 39 DDPTHPDQVHISLVGPDKMRISWITQ--DS-IP----PSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLK 111 (427)
T ss_pred CCCCCCceEEEEEcCCCeEEEEEECC--CC-CC----CEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCC
Confidence 44557888888766688999999872 22 11 24667654422222111110 112234566899999
Q ss_pred ceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 457 YYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 457 p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
|+|.|..+|- ....|+...++|.|.
T Consensus 112 p~T~Y~Yrvg------~~~~s~~~~F~T~p~ 136 (427)
T PLN02533 112 PNTVYYYKCG------GPSSTQEFSFRTPPS 136 (427)
T ss_pred CCCEEEEEEC------CCCCccceEEECCCC
Confidence 9999999983 223477788888764
No 417
>KOG4802|consensus
Probab=92.89 E-value=0.12 Score=46.61 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=50.8
Q ss_pred CCceeee-eccccccEEEEEEeCCccccCCCCceEEEEEE------------EcCCCCcEEEEeeecCceeeEEEEcCCc
Q psy14886 389 APSRIGG-GGGKIGDLSISWEPLPREKQNAPNIYYKIFWR------------KKNDTEFQSETLKEYGNVGIAVVRIPSE 455 (505)
Q Consensus 389 ~P~~~~~-~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~L 455 (505)
+|++... .....+++.+.|.. ... +.-|.+.+. +.+.-.|+.+..... ...+.+.++
T Consensus 147 ~Pr~k~~y~r~~~g~~av~w~~--~~~----~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~----e~~~~~t~~ 216 (516)
T KOG4802|consen 147 PPRPKILYFRRSRGSHAVDWKI--ESS----LLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTME----ENTYIFTDM 216 (516)
T ss_pred CCcchhhhhhhccCceeeeeee--ccc----cceeeeehhhhhhhcccccccccccccceeeeecCC----Cceeeeeec
Confidence 4544443 34456778899976 221 222222221 122445665555542 246788889
Q ss_pred cceeeEEEEEEEecCCCC---CCCCceEEE
Q psy14886 456 FYYTEYEVKVQAINDVGP---GPESEVVTI 482 (505)
Q Consensus 456 ~p~~~Y~~~v~a~n~~G~---g~~s~~~~~ 482 (505)
.||..|+|||.|+|..|. +.+|+...-
T Consensus 217 rPgRwyefrvaavn~~G~rGFs~PSkpf~s 246 (516)
T KOG4802|consen 217 RPGRWYEFRVAAVNAYGFRGFSEPSKPFPS 246 (516)
T ss_pred CcceeEEEEEeeeecccccccCCCCCCCCC
Confidence 999999999999999864 555555443
No 418
>KOG3632|consensus
Probab=92.59 E-value=0.83 Score=46.41 Aligned_cols=174 Identities=18% Similarity=0.201 Sum_probs=102.8
Q ss_pred cCCCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccCCc
Q psy14886 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355 (505)
Q Consensus 276 ~~~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 355 (505)
...+..|..+++..+...+..++|-+-..... .+.|-...+-. . .......+++.+ |.|++
T Consensus 669 g~a~vvpsqlrv~n~tqtSa~itwvp~nsn~~-----Hviyln~eE~~--p-----------s~a~~y~ytf~~-lrpgt 729 (1335)
T KOG3632|consen 669 GAAPVVPSQLRVWNATQTSAMITWVPFNSNFL-----HVIYLNAEEPR--P-----------SVAEMYNYTFMR-LRPGT 729 (1335)
T ss_pred ccccccchhhhhhhhhchhhheeeeecCCCcc-----eeeecCCccCC--C-----------chhhhhHHHHhc-cCCCC
Confidence 45677888999999999999999985432211 11111110000 0 001223445555 99999
Q ss_pred eeEEEEEEEcC-CCcCCC-------CCCCCCccCCCCCCCCCCceeeee-ccccccEEEEEEeCCcccc----CCCCceE
Q psy14886 356 TYEFKVIAGNE-LGYGEP-------SSPSPQYNTPADKPYQAPSRIGGG-GGKIGDLSISWEPLPREKQ----NAPNIYY 422 (505)
Q Consensus 356 ~y~~~v~a~n~-~G~~~~-------s~~~~~~~t~~~~p~~~P~~~~~~-~~~~~~v~l~W~~~~~~~~----~~~i~~Y 422 (505)
.|..+|.+.-. .+.+.. -...+.+.|.++.|+.||..+.+. ..+...+.++|.|+-.+.. +..+++|
T Consensus 730 ~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgY 809 (1335)
T KOG3632|consen 730 DYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGY 809 (1335)
T ss_pred ccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeee
Confidence 99999998665 332211 112246788899999999999996 5577899999998544332 2367889
Q ss_pred EEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccc-eeeEEEEEEEecCCCCC
Q psy14886 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-YTEYEVKVQAINDVGPG 474 (505)
Q Consensus 423 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p-~~~Y~~~v~a~n~~G~g 474 (505)
.|.-. + .... .. .. .....+.+.+.-|+- ...=.|.|+.....|.+
T Consensus 810 avyad--g-qkv~-Ev-af-ptagst~VelsQlq~~l~~~~V~vRtms~~ges 856 (1335)
T KOG3632|consen 810 AVYAD--G-QKVE-EV-AF-PTAGSTKVELSQLQDGLYHGAVGVRTMSVPGES 856 (1335)
T ss_pred eeeeC--C-ceee-ee-ec-ccCCceEEEeeeehhhheecceeEEecccCccc
Confidence 88643 1 1111 11 11 122334444444443 45556667666666765
No 419
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.41 E-value=2.1 Score=31.01 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=46.4
Q ss_pred EEEEEEeeecCCCCe--EEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCcEE-EEEEEE
Q psy14886 198 LQLRCSAHTEELLDV--AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKIS-TKTTVI 274 (505)
Q Consensus 198 ~~l~C~~~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~~~-~~~~l~ 274 (505)
..+.|...-...+.. -+.|..+....... .......+...+-.|.|..++..|+|.|...+++..|... ..+.+.
T Consensus 28 ~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~--~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVs 105 (108)
T PF11465_consen 28 YSVQWKMQLPSQKKFEVILTWKNDSTPSYNS--SFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVS 105 (108)
T ss_dssp EEEEEEEEETSSSEEE-EEEEETTEEEESST--THHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEE
T ss_pred EEEEEEEEcccCCceEEEEEEcCCCcccccc--cccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEE
Confidence 345665554333333 36676544443321 1122345556678999999999999999999999999863 445555
Q ss_pred E
Q psy14886 275 V 275 (505)
Q Consensus 275 v 275 (505)
|
T Consensus 106 V 106 (108)
T PF11465_consen 106 V 106 (108)
T ss_dssp E
T ss_pred e
Confidence 4
No 420
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.34 E-value=0.54 Score=33.91 Aligned_cols=37 Identities=35% Similarity=0.401 Sum_probs=27.7
Q ss_pred CCCEEEcCCCCCCCEEEEEEEEcCCCceeee-EEEEEE
Q psy14886 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVL 177 (505)
Q Consensus 141 ~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~ 177 (505)
+-+|.|+.++..|+|.|.-.+.+..|..... +.+.|.
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 4579999999999999999999988877443 555543
No 421
>KOG4597|consensus
Probab=92.07 E-value=0.31 Score=45.00 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=59.9
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEE---CCEEecCC-----CcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKK---DGNIIGSG-----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~---~g~~~~~~-----~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
-.+..+++..++|.+.|.+.+.|+|.+ |+..+... .+....+...|.|-+....|+|.|+|.+.+..|....
T Consensus 206 w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~r 285 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRR 285 (560)
T ss_pred hhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeec
Confidence 457789999999999999999999986 33332211 1122223345999999999999999999999998888
Q ss_pred eEEEEEEe
Q psy14886 171 KGRLIVLH 178 (505)
Q Consensus 171 ~~~l~v~~ 178 (505)
.+.+.+..
T Consensus 286 dv~c~s~~ 293 (560)
T KOG4597|consen 286 DVPCSSVK 293 (560)
T ss_pred cceeeeec
Confidence 87766643
No 422
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=91.61 E-value=4 Score=29.65 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=52.8
Q ss_pred CceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecC--ceeeEEEEcCCc--cceeeEEEEE
Q psy14886 390 PSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG--NVGIAVVRIPSE--FYYTEYEVKV 465 (505)
Q Consensus 390 P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~L--~p~~~Y~~~v 465 (505)
|.++.-.-.+...+.-+|++ . ....+-+.|.|.|+.........-..-... ....+.+..... .....|.|.|
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~--g-~~~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V 78 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEP--G-KEAPPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCV 78 (99)
T ss_dssp -EEEEEEEETTTEEEEEEEC--C-TTCSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEE
T ss_pred CeeCEEEEECCEEEEEEECC--C-CCCCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEE
Confidence 45666555568899999997 2 223346799999999763332221111112 234456666555 2346899999
Q ss_pred EEecCCCCCCCC
Q psy14886 466 QAINDVGPGPES 477 (505)
Q Consensus 466 ~a~n~~G~g~~s 477 (505)
.+.+..|.-.+.
T Consensus 79 ~~ss~~~~i~~~ 90 (99)
T PF09240_consen 79 NGSSSAGSIRSS 90 (99)
T ss_dssp EEEETTEEEECE
T ss_pred EeccCCCccCCc
Confidence 999998875444
No 423
>KOG0613|consensus
Probab=91.41 E-value=2.9 Score=44.31 Aligned_cols=182 Identities=20% Similarity=0.160 Sum_probs=100.8
Q ss_pred EcCCCCCCCceEEEEEeCCeEEEEeecCCC-CCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccC
Q psy14886 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGAT-NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353 (505)
Q Consensus 275 v~~~p~~p~~~~~~~~~~~~v~l~w~~~~~-~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 353 (505)
...++.+|.+-....+...-+...|..+.. ++..+..|.+..+..+...|........ ....+.. ..
T Consensus 136 ~e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~----------~~s~~~~-a~- 203 (1205)
T KOG0613|consen 136 QEKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQPT----------DDSTDTD-AH- 203 (1205)
T ss_pred hcCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCccccccccc----------CCcceec-cc-
Confidence 344555666555566677788889988774 4566688999988888877776543322 1111111 22
Q ss_pred CceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEE-cCCC
Q psy14886 354 WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRK-KNDT 432 (505)
Q Consensus 354 ~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~-~~~~ 432 (505)
|+++++++-..|...+-... .+.-....+...|....+......-+.+.|..+ ..+.--.+.+|.++-.. .+..
T Consensus 204 ---~e~~v~~v~s~gqp~~~~~~-~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~-~G~~~~~~~~~l~e~~~~~~~~ 278 (1205)
T KOG0613|consen 204 ---YESRVRAVVSAGQPEPLERW-EILGELIAPGSAPSMSVTLEASDRKIQLTLRAP-RGPYSAHILGYLIEQRKHKGGN 278 (1205)
T ss_pred ---cceeEEEEEecCCCccchhh-hhcccccCCCCccccccccchhheeeeEEeecC-CCchHHHHhcchhhhcccCCCc
Confidence 55555555555554432221 222223344445554444555667788888763 22333355677776665 3344
Q ss_pred CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCC
Q psy14886 433 EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE 476 (505)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~ 476 (505)
.|....-........+...- .++-.|.+++...=..|.+.+
T Consensus 279 t~~i~~~~~~~~~s~t~~~~---~~~~q~~~~v~~~~~i~~~~~ 319 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADK---RQGCQDRFKVTEEAPIGKGKP 319 (1205)
T ss_pred cccccccCCccccceeeecc---cCCcccceeeeEEeecccccc
Confidence 44433322222223333333 347888888888888887543
No 424
>KOG4152|consensus
Probab=91.23 E-value=0.16 Score=47.33 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=31.0
Q ss_pred CCccceeeEEEEEEEecCCCCCCCCceEEEeecc
Q psy14886 453 PSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486 (505)
Q Consensus 453 ~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p 486 (505)
.+|.+|+.|.|||.|.|..|.|++|++..+.|.-
T Consensus 652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~ 685 (830)
T KOG4152|consen 652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCA 685 (830)
T ss_pred cccccccceeeeeeeeeccCCCchhhheeeeecc
Confidence 4588999999999999999999999999998853
No 425
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=89.48 E-value=1.1 Score=40.21 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.5
Q ss_pred ceEEEEEEec-cC-CCeEEEEEC
Q psy14886 6 DLTWTCEAFG-VP-DVTYSWFRN 26 (505)
Q Consensus 6 ~~~l~C~~~~-~p-~~~~~W~~~ 26 (505)
.++|.|.|.| +| ...++|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999998 56 588999999
No 426
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=89.29 E-value=2.2 Score=30.17 Aligned_cols=62 Identities=18% Similarity=0.437 Sum_probs=39.2
Q ss_pred EEeeCCCeEEEEeecCCC-----CCCeEEEEECCEEecCCCcEEEeeCC--CEEEcCCCCCCCEEEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAA-----PKPKFVWKKDGNIIGSGGRRKIFENG--NLLISPVSRDDSGIYSCTA 161 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~-----p~~~i~W~~~g~~~~~~~~~~~~~~~--~l~i~~v~~~d~G~y~C~~ 161 (505)
..+..|++++..|..... ....|.|..++..+.. .++....++ .+++.+......-.|-|..
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~-~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG-SQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC-GCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh-hHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 458899999999997533 3458999999986544 455554444 4666666555555666663
No 427
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=89.16 E-value=1.5 Score=28.88 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=29.4
Q ss_pred EEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCC
Q psy14886 422 YKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477 (505)
Q Consensus 422 Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s 477 (505)
...+|+..+ +.+|....... ..+.+++|.|| .|.|.|+|.+..|.-...
T Consensus 8 ~~Y~Y~l~g~d~~W~~~~~~~------~~~~~~~L~~G-~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 8 IRYRYRLEGFDDEWITLGSYS------NSISYTNLPPG-KYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EEEEEEEETTESSEEEESSTS-------EEEEES--SE-EEEEEEEEEETTS-B-SS
T ss_pred eEEEEEEECCCCeEEECCCCc------EEEEEEeCCCE-EEEEEEEEECCCCCcCcc
Confidence 344555554 56777433221 16677888875 899999999998875544
No 428
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=89.14 E-value=5.5 Score=27.50 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=37.4
Q ss_pred EEEEEEecc-----C--CCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEE-EcccCceEeeE
Q psy14886 8 TWTCEAFGV-----P--DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA-KNQLKTRYSSA 79 (505)
Q Consensus 8 ~l~C~~~~~-----p--~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~-~~~~~~~~~~~ 79 (505)
.|.|..-+. | .+.+.|.-.+..+ ....+.+...... ..|+|.+.|.| .+.........
T Consensus 9 ~l~~e~L~~tl~~~~~~~~~~~l~~~~~k~-------------~~~~~~~~~~~~~-~~d~G~w~C~a~~~~~k~~~s~~ 74 (80)
T PF05790_consen 9 VLPCEVLELTLEKPPGMKPSLFLENPGKKS-------------LETKKLVSTFTPT-TEDSGTWVCTASDNEPKERESKI 74 (80)
T ss_dssp EEEEEEESECEEETTTECEEEEEECSSCEE-------------EEESSEEEEESBT-CGGSEEEEEEEEECTTEEEEEEE
T ss_pred EeeeeeEEEEEcCCCCCChhheeeccCccc-------------cccceEEEEecCC-CCCCEEEEEEEcCCceEEEEEEE
Confidence 566766332 2 4666776554322 2345667777777 89999999999 44443344444
Q ss_pred EEEE
Q psy14886 80 QLRV 83 (505)
Q Consensus 80 ~l~v 83 (505)
.+.|
T Consensus 75 ~i~v 78 (80)
T PF05790_consen 75 EILV 78 (80)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5544
No 429
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=88.77 E-value=9.4 Score=38.74 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=62.8
Q ss_pred eeeEEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccC-CCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCce
Q psy14886 343 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT-PADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIY 421 (505)
Q Consensus 343 ~~~~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t-~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~ 421 (505)
..+-+.+ +.+ ..|..+|+|.|..|....-..+..+.. .+..|+..+.-+... ...-.+.+.|=- |--.
T Consensus 660 ~~~~~~g-i~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~-~it~~~~l~v~d--------Pt~~ 728 (952)
T COG4733 660 AGFDVEG-IPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAV-IITLVIRLVVGD--------PTGA 728 (952)
T ss_pred cceeecC-cCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceE-EEEeeeeEEEec--------CCcc
Confidence 3444555 655 799999999999998754432223322 223332222111111 112345555543 2233
Q ss_pred EEEEEEEc-----CCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCc
Q psy14886 422 YKIFWRKK-----NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 478 (505)
Q Consensus 422 Y~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~ 478 (505)
|.+.+.+. .+.+......-... ...... .+|.|+..|.|+++++|..|.+.+-+
T Consensus 729 ~d~~~sei~~s~~~d~~~~Ar~LG~~~--~~~~~~-~~i~~g~~~~F~~R~Vn~vG~~~~~e 787 (952)
T COG4733 729 VDITSTEIRSAVIADGNFQARSLGNLN--YPGLFS-VGIQAGLTFWFRNRNVDLVGNNDKWE 787 (952)
T ss_pred eEEeeeeeeeeccccchhHHhhhhccc--cccccc-cCcCCCceEEEEeeecccccccccce
Confidence 44444332 22222111111100 111112 57889999999999999999976655
No 430
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=87.97 E-value=2.2 Score=29.50 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=25.0
Q ss_pred CCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEE
Q psy14886 118 KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162 (505)
Q Consensus 118 ~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~ 162 (505)
.+.+.|+..+..+.. ....+.+......|+|.+.|.|.
T Consensus 26 ~~~~~l~~~~~k~~~-------~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKSLE-------TKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEEEE-------ESSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCccccc-------cceEEEEecCCCCCCEEEEEEEc
Confidence 457777765543322 12235566777899999999994
No 431
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=87.56 E-value=3.3 Score=30.51 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=40.4
Q ss_pred eEEEEEeCCeEEEEeecCC-----CCC-------CCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeecc
Q psy14886 285 VQVVEVHKTSATIQWTDGA-----TNG-------RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 352 (505)
Q Consensus 285 ~~~~~~~~~~v~l~w~~~~-----~~~-------~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 352 (505)
+.+ ...+..+.+.+.+|. ... .+-..|.|.+...++..-.... ........+.+|.
T Consensus 8 v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~~-----------~~~~~~~~l~~L~ 75 (106)
T PF09294_consen 8 VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKEI-----------ETKNSSVTLSDLK 75 (106)
T ss_dssp EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEEE-----------ESSSEEEEEES--
T ss_pred EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEEE-----------eecCCEEEEeCCC
Confidence 555 677888999998875 111 1124688988877665211111 1233443444599
Q ss_pred CCceeEEEEEE
Q psy14886 353 PWSTYEFKVIA 363 (505)
Q Consensus 353 ~~~~y~~~v~a 363 (505)
|++.|-++|.+
T Consensus 76 p~t~YCv~V~~ 86 (106)
T PF09294_consen 76 PGTNYCVSVQA 86 (106)
T ss_dssp TTSEEEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 99999999999
No 432
>PHA03052 Hypothetical protein; Provisional
Probab=87.06 E-value=2.4 Score=27.57 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=24.9
Q ss_pred CCCCCceEEEEEEe-ccC--CCeEEEEECCEECc
Q psy14886 1 MDNQADLTWTCEAF-GVP--DVTYSWFRNGELLN 31 (505)
Q Consensus 1 v~~G~~~~l~C~~~-~~p--~~~~~W~~~~~~l~ 31 (505)
++-|+.++|.|.+. +.+ .+.+.|.-|+..+.
T Consensus 9 ~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 9 TSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred EEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 35699999999995 333 68899999999884
No 433
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=86.97 E-value=0.66 Score=44.91 Aligned_cols=312 Identities=17% Similarity=0.195 Sum_probs=23.1
Q ss_pred ceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeE--EEEEEE-cccCc--eEeeEE
Q psy14886 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM--YQCRAK-NQLKT--RYSSAQ 80 (505)
Q Consensus 6 ~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~--Y~C~~~-~~~~~--~~~~~~ 80 (505)
.+.|.|.. .-...+.|..-..+....... ... ......|.|.... . ..|. |...+. ..... ....+.
T Consensus 2 ~~~~~C~~--~~~~~y~W~~~~~~~~~~~~~--~~~--~~~~~~l~ip~~~-L-~~G~y~~~~~Vt~~~~~~~~~~~~~~ 73 (440)
T PF02010_consen 2 HVSLNCND--ASTVTYNWTVFSGPSNSIVQD--MDN--SSNTPQLTIPPYT-L-PPGDYTFTLTVTASSNPGLSSTDSVT 73 (440)
T ss_dssp ----------------BEEEEES-TT-EEES--TTT----SSSECEEECES----SCEEEEEEEEE--BCTTEEEEEEEE
T ss_pred Cccccccc--ccceEEEEEEEecCCcCcccc--ccc--cCCceEEEeCccc-C-CCCCEEEEEEEEEECCCCceEEEEEE
Confidence 46788943 235788998732211100000 000 2234578887766 4 3444 455555 22222 233455
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEeecCCCC-------CCeEEEEECCEEecCC-------CcEEEeeCCCEEE
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP-------KPKFVWKKDGNIIGSG-------GRRKIFENGNLLI 146 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~~~~~p-------~~~i~W~~~g~~~~~~-------~~~~~~~~~~l~i 146 (505)
+.|...+....+.. .....+..++.+.|.....-.| ...+.|......-... ..........+.|
T Consensus 74 v~V~~s~l~~~I~g-G~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i 152 (440)
T PF02010_consen 74 VTVEPSPLVAVIKG-GSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTI 152 (440)
T ss_dssp EEEE----------------------------------------------------------------------------
T ss_pred EEEeeccceeEEcC-CccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEE
Confidence 66654222222211 1222333445677776433223 2367787643222100 0011112334666
Q ss_pred cCCCCCCCEEEEE--EEEcCCC-ceeeeEEEEEEe--CCeeeeeCCC--ceEEEeeccEEEEEEeeecC--CCCeEEEEE
Q psy14886 147 SPVSRDDSGIYSC--TATNVHG-MDESKGRLIVLH--GPSYYEQLPP--KITIAAHRNLQLRCSAHTEE--LLDVAYIWT 217 (505)
Q Consensus 147 ~~v~~~d~G~y~C--~~~~~~g-~~~~~~~l~v~~--~p~~~~~~~~--~~~~~~g~~~~l~C~~~~~~--~~~~~~~w~ 217 (505)
..........|.- .+....+ .......+.+.. +|........ ...+..++.+.|.-.....+ ...+.+.|.
T Consensus 153 ~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Ws 232 (440)
T PF02010_consen 153 PASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWS 232 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEE
Confidence 4333322222544 4444433 222233344432 2222111111 11255666666654444322 334567787
Q ss_pred e---CCEEecCCCCCcc-cCCeeeecCCeEEEecCCCCCCEEEE--EEEEecCCcE-EEEEEEEEcCCCCCCCceEEEEE
Q psy14886 218 H---NGVRIGNMDLNEL-ETPNINIDGGLLEITNASFADAGEYE--CVVKSTVGKI-STKTTVIVEGPPGLPGGVQVVEV 290 (505)
Q Consensus 218 ~---~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~--C~~~n~~g~~-~~~~~l~v~~~p~~p~~~~~~~~ 290 (505)
. .+........... ...........|.|..-.......|. +.+.+..+.. ...+.+.+..+|.. ..+.+...
T Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~-g~c~v~P~ 311 (440)
T PF02010_consen 233 LFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPSG-GSCSVSPS 311 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Eeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 6 0000000000000 00111223345666544444444554 5555554443 56667777666542 23333222
Q ss_pred ----eCCeEEEEeecCCCCCCCCceEEEEE-EeCCCCCeEEee
Q psy14886 291 ----HKTSATIQWTDGATNGRPITHYKIIA-RTNWNSTWFNVS 328 (505)
Q Consensus 291 ----~~~~v~l~w~~~~~~~~~i~~y~v~~-~~~~~~~w~~~~ 328 (505)
-.+..++.|.-..+.+. .+.|.+.+ .......|..+.
T Consensus 312 ~G~al~T~Ft~~c~~~~d~~~-pL~Y~f~~~~~~~~~~~~~L~ 353 (440)
T PF02010_consen 312 SGYALETTFTITCSGWTDDDQ-PLTYQFYYSSDDGSGSWNLLY 353 (440)
T ss_dssp -------------------------------------------
T ss_pred ccccccccccccccccccccc-ccccccccccccccccccccc
Confidence 22456677765544444 45688777 333344454443
No 434
>PHA03286 envelope glycoprotein E; Provisional
Probab=86.74 E-value=28 Score=32.73 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCCCCCeEEEEEEEcccCceEe-eEEEEEEec----CCCcc--CCCCC----------ceEEeeCCCeEEE
Q psy14886 47 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTL----KPSFK--KRPLE----------SETYAGEGGNVTI 109 (505)
Q Consensus 47 ~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~----~p~~~--~~~~~----------~~~~v~~g~~v~l 109 (505)
.+.|.|.+++ ..++|.|+-..+|..+.... .+.|.|... +|... +.+.. .......|+++.+
T Consensus 126 ~~~L~I~nAt-~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v 204 (492)
T PHA03286 126 GKELTILNAS-SQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA 204 (492)
T ss_pred CCceEEeecc-ccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence 3679999999 99999999999987666544 455666422 22222 22211 1234678999877
Q ss_pred EeecCC--CC---CCeEEEEE
Q psy14886 110 FCNPEA--AP---KPKFVWKK 125 (505)
Q Consensus 110 ~C~~~~--~p---~~~i~W~~ 125 (505)
.-.... .. ..++.|+.
T Consensus 205 Sv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 205 SVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEEeecccCCCceEEEEEEE
Confidence 765431 11 34889965
No 435
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=85.81 E-value=0.66 Score=32.81 Aligned_cols=59 Identities=22% Similarity=0.433 Sum_probs=36.4
Q ss_pred CCCCCceEEEEEEec-----cCCCeEEEEECCEECcCCCCCCCCCCcEEE-EC--CeEEEEcCCCCCCCeEEEEEE
Q psy14886 1 MDNQADLTWTCEAFG-----VPDVTYSWFRNGELLNSETLPLEDQDRYFI-QD--NVLTIRYLNPERDPAMYQCRA 68 (505)
Q Consensus 1 v~~G~~~~l~C~~~~-----~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~--~~L~i~~~~~~~d~G~Y~C~~ 68 (505)
|..|+.++..|.+.. ..+..+.|..|+..++. .++.. .+ +++.+.+.. ...+-.|.|..
T Consensus 15 v~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~--------~qy~~in~~~SsVT~~~~~-~~~~~L~cC~l 81 (89)
T PF06328_consen 15 VSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG--------SQYRVINDTVSSVTLPNLN-PTGATLFCCKL 81 (89)
T ss_dssp EETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC--------GCEEEESTTEEEEEESS---SSEEEEEEEEE
T ss_pred EeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh--------hHcceeCCeEEEEEEccCC-CCCceEEEEEE
Confidence 457999999999953 24678999999987763 34443 22 456666665 44444667764
No 436
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=84.61 E-value=23 Score=29.75 Aligned_cols=138 Identities=17% Similarity=0.320 Sum_probs=61.5
Q ss_pred CCeEEEEECCEECcCCCCCC----CCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEecCCCccCC
Q psy14886 18 DVTYSWFRNGELLNSETLPL----EDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKR 93 (505)
Q Consensus 18 ~~~~~W~~~~~~l~~~~~~~----~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~~~~~ 93 (505)
...+.|+.||.++....... ...+ ....-++|.+......+..=..+|.+.-.......+.. .-. ..|..-..
T Consensus 6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G-~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~-~a~-~~P~Vy~~ 82 (211)
T PF02124_consen 6 SVRFRWFEDGNPVEPRFIRDSSQVWSDG-LFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRF-NAT-ATPSVYPK 82 (211)
T ss_pred cEEEEEEECCEeCCccceeeEEEEecCC-cEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEe-ecc-cccceecC
Confidence 46789999999887331100 0001 11112455552222144455789998743332211111 111 11221111
Q ss_pred CCCceEEeeCCCeEEEEeecCCCC--CCeEEEEECCEEecCCCcEEEee-----CCCEEEcCCC--CCCCE--EEEEEEE
Q psy14886 94 PLESETYAGEGGNVTIFCNPEAAP--KPKFVWKKDGNIIGSGGRRKIFE-----NGNLLISPVS--RDDSG--IYSCTAT 162 (505)
Q Consensus 94 ~~~~~~~v~~g~~v~l~C~~~~~p--~~~i~W~~~g~~~~~~~~~~~~~-----~~~l~i~~v~--~~d~G--~y~C~~~ 162 (505)
| .-.+.+..|. ..|.+.--| ...+.|.-++............. .+...|.+.. ....| .|+|.+.
T Consensus 83 P-~vsv~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~ 158 (211)
T PF02124_consen 83 P-RVSVRFEDGY---AVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLI 158 (211)
T ss_pred C-EEEEEecCCE---EEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEe
Confidence 1 1112233443 346654444 25899998776532221111111 1223333322 23445 8999986
No 437
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=84.50 E-value=1.6 Score=42.19 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=0.0
Q ss_pred eccCCceeEEEEEEEcCCCcCC
Q psy14886 350 VLVPWSTYEFKVIAGNELGYGE 371 (505)
Q Consensus 350 ~L~~~~~y~~~v~a~n~~G~~~ 371 (505)
-|.++..|.|++.+.+..+...
T Consensus 268 ~l~~g~~Y~~~l~v~~~~~~~~ 289 (440)
T PF02010_consen 268 VLEPGSTYTFRLTVTDSSGSSG 289 (440)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 3889999999999998877653
No 438
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=84.07 E-value=11 Score=36.57 Aligned_cols=48 Identities=21% Similarity=0.141 Sum_probs=24.8
Q ss_pred eEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecc------eEEEEEEEeCc
Q psy14886 447 IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP------LVIISYVCQGD 497 (505)
Q Consensus 447 ~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p------~~~~~~~~~~~ 497 (505)
...+.|++|.|++.|..++.+. +.+..|..-.++|.| -.+.-.+|.+.
T Consensus 63 t~~v~v~gL~p~t~Y~Y~~~~~---~~~~~s~~g~~rT~p~~~~~~~r~a~~SC~~~ 116 (453)
T PF09423_consen 63 TVKVDVTGLQPGTRYYYRFVVD---GGGQTSPVGRFRTAPDGDPDPFRFAFGSCQNY 116 (453)
T ss_dssp EEEEEE-S--TT-EEEEEEEE-----TTEE---EEEE--TT-----EEEEEE----C
T ss_pred EeecccCCCCCCceEEEEEEEe---cCCCCCCceEEEcCCCCCCCceEEEEECCCCc
Confidence 4567899999999999999992 235556666777764 45677888764
No 439
>KOG1026|consensus
Probab=83.99 E-value=4.3 Score=41.07 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=87.9
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQ 80 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 80 (505)
+..|..+++.|...+.|.+...|+.++......... ..+.. +.. .-.-++.|.+.|..+.....+.
T Consensus 204 v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~-----------~~~c~-~~~--~~~~~~~c~~E~~~~~~~~~v~ 269 (774)
T KOG1026|consen 204 VEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQT-----------SSLCR-SEC--EVLENDLCIAENAVARSNPSIL 269 (774)
T ss_pred hcccchheeeeecccCCCcceeeecccccccCCCcc-----------ccccc-ccc--eeeechhhHHHHhhhhcCceee
Confidence 467899999999999999999999987655432110 01111 111 1111289998888887777777
Q ss_pred EEEEecCCCccCCCCCceEEeeCCCeEEEEee---cCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCC
Q psy14886 81 LRVLTLKPSFKKRPLESETYAGEGGNVTIFCN---PEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDS 154 (505)
Q Consensus 81 l~v~~~~p~~~~~~~~~~~~v~~g~~v~l~C~---~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~ 154 (505)
+.+.............+. .-.|. +.+.+.+...|-.++..+...+....... +-+....-+..+.
T Consensus 270 ~~~~~p~~~~~~~~~~~~---------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~ 340 (774)
T KOG1026|consen 270 LVVDLPKAEVLLCSPLSD---------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHN 340 (774)
T ss_pred eEEecccccccCCCCccc---------cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCccccc
Confidence 666642222222211111 12233 23456667788887765442221111111 2233333356788
Q ss_pred EEEEEEEEcCCCceeeeEEEEEEeCC
Q psy14886 155 GIYSCTATNVHGMDESKGRLIVLHGP 180 (505)
Q Consensus 155 G~y~C~~~~~~g~~~~~~~l~v~~~p 180 (505)
|.|+|.+.+..|.........+...|
T Consensus 341 ~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 341 GNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred CcceeeecccCccccccCcCccccCC
Confidence 99999999887776655444443333
No 440
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=83.10 E-value=35 Score=30.77 Aligned_cols=196 Identities=12% Similarity=0.046 Sum_probs=94.8
Q ss_pred CCCEEEEEEEEecCCcEEEEEEEEE-cCCCCCC--CceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEe
Q psy14886 251 ADAGEYECVVKSTVGKISTKTTVIV-EGPPGLP--GGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327 (505)
Q Consensus 251 ~~~g~y~C~~~n~~g~~~~~~~l~v-~~~p~~p--~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~ 327 (505)
.....|...+.+..+..+-++...- ...-.|+ ..+++....++++.|+|+-+.. ...|.++....+.......
T Consensus 134 ~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~----~~yy~IY~~~~g~e~~~~i 209 (343)
T COG3401 134 NEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEA----EDYYRIYASDSGNEEYGFI 209 (343)
T ss_pred ccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCccc----cceEEEeccCCccccccce
Confidence 3344556666666555444433221 1111222 3344555567889999974332 2267777655544433332
Q ss_pred eeccccceeeeecCceeeEEeeeccCCceeEEEEEEEcCCCc-CCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEE
Q psy14886 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY-GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSIS 406 (505)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~y~~~v~a~n~~G~-~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~ 406 (505)
..... ..+.......+..|.|.+.+.-..|. +..+.....-.+ .+.+. .|. +.......+.+.|.
T Consensus 210 a~t~~-----------n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~~t~~~~-~g~~e-~pt-~~g~t~~~s~i~V~ 275 (343)
T COG3401 210 AQTTE-----------NSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNEPTVGET-GGRYE-VPT-IPGETTEASFIGVA 275 (343)
T ss_pred eeccc-----------cchhhhhhccCceeEEEEEEEcCCcceeccCCccccccc-cCCcc-ccc-CCCceeeeeeeeEE
Confidence 22111 11111113337778888887665544 433332211111 12221 111 11112234556788
Q ss_pred EEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCC
Q psy14886 407 WEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGP 475 (505)
Q Consensus 407 W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~ 475 (505)
|+.- +.. ....|.+.--..+... .... ...+...+..+.++..|.+.|.|++.+|.+.
T Consensus 276 ~E~~-~~~---~av~ytvyr~~~g~~~-~~f~------it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 276 AEQN-QLR---QAVTYTVYRVEDGTPT-KFFT------ITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred eccc-ccc---eeeEEeeeeccCCCcc-eeee------eeeccccchhhccccceeEEEEEeccccccc
Confidence 8762 112 2444554332332111 1111 1234556667778999999999999999853
No 441
>PHA03189 UL14 tegument protein; Provisional
Probab=80.85 E-value=19 Score=31.76 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=16.6
Q ss_pred eEEEEcCCCCCCCeEEEEEEEcccCc
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQLKT 74 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~~~~ 74 (505)
+|.+.-. .+-+|.|.|...|....
T Consensus 135 tLtF~v~--t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 135 TLTFRVS--TSTAGMYECVLRNETHG 158 (348)
T ss_pred EEEEEEE--ecccceEEEEeccccce
Confidence 4555443 47899999999886433
No 442
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=80.12 E-value=18 Score=25.52 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=34.3
Q ss_pred EEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceee
Q psy14886 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 170 (505)
Q Consensus 107 v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~ 170 (505)
..|.+.+.+. ...+.|+.||..+..... ...+.+. ....|.|+..+.+..|....
T Consensus 32 ~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-----~~~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 32 QPLVLKAAGG-RGPVYWFVDGEPLGTTQP-----GHQLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred ceEEEEEeCC-CCcEEEEECCEEcccCCC-----CCeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 3444444444 338999999999843221 2223332 24679999999888887654
No 443
>KOG4806|consensus
Probab=79.61 E-value=48 Score=30.03 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=74.6
Q ss_pred EEeeeccCCceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeee--eccccccEEEEEEeCCccccCCCCceEE
Q psy14886 346 SIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGG--GGGKIGDLSISWEPLPREKQNAPNIYYK 423 (505)
Q Consensus 346 ~~~~~L~~~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~--~~~~~~~v~l~W~~~~~~~~~~~i~~Y~ 423 (505)
++...+.++..|.++....|....-..-............-|.-|.+-++ ...+-++.+|.|.-. + +. -..|=
T Consensus 286 ~~Qfvv~~~~~~~~rf~~~ndde~~~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs-~-d~---~~kyC 360 (454)
T KOG4806|consen 286 IRQFVVLPGERYLMRFEPSNDDEALQKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGS-P-DE---ELKYC 360 (454)
T ss_pred eeEEEecCCCceEEEEEecCCchhhheeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccC-c-ch---heeEE
Confidence 33444888999999999888754432111100111111222334555544 456678999999872 2 21 34555
Q ss_pred EEEEEcCCC-------------------------CcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCCCCCCc
Q psy14886 424 IFWRKKNDT-------------------------EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 478 (505)
Q Consensus 424 v~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~ 478 (505)
|..++..+. +|................+|-||.||..|.+-|.|.-..|..-+=.
T Consensus 361 Iy~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyq 440 (454)
T KOG4806|consen 361 IYVFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQ 440 (454)
T ss_pred EEEecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCccccce
Confidence 555543210 0111100011111234557899999999999999988888766555
Q ss_pred eEEEee
Q psy14886 479 VVTIWH 484 (505)
Q Consensus 479 ~~~~~t 484 (505)
.+.++|
T Consensus 441 a~~v~t 446 (454)
T KOG4806|consen 441 ALTVHT 446 (454)
T ss_pred eEEEEe
Confidence 555544
No 444
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=78.01 E-value=98 Score=32.73 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=54.1
Q ss_pred ceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC---CCCcEE--------EEeeecCceeeEEEEcCCc--cc
Q psy14886 391 SRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN---DTEFQS--------ETLKEYGNVGIAVVRIPSE--FY 457 (505)
Q Consensus 391 ~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~l~~L--~p 457 (505)
..+.+. .....|.|+|+.|-.+...|....|.|+|...- ...+.. ......+......+...+. ..
T Consensus 760 tDL~~~-~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~~~~~~ 838 (863)
T TIGR00868 760 TDLEAG-FQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEGIPIEN 838 (863)
T ss_pred eeeEEe-ecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCcccccC
Confidence 344442 344559999999655558899999999997642 011111 0111223333444544442 24
Q ss_pred eeeEEEEEEEecCCCC-CCCCce
Q psy14886 458 YTEYEVKVQAINDVGP-GPESEV 479 (505)
Q Consensus 458 ~~~Y~~~v~a~n~~G~-g~~s~~ 479 (505)
++.|.|-|+|++..|. |..|.+
T Consensus 839 ~~~~~~ai~a~d~~~~~s~~sn~ 861 (863)
T TIGR00868 839 GTDLFIAVQAIDKANLTSEVSNI 861 (863)
T ss_pred CeEEEEEEEEEcccccccccccc
Confidence 7899999999999975 777764
No 445
>PHA03283 envelope glycoprotein E; Provisional
Probab=77.62 E-value=46 Score=32.10 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=29.3
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEe
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~ 178 (505)
+.|+|.+++.+++|.|+-...+..+.....+.|.|..
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 4599999999999999999998766444456677755
No 446
>PHA03052 Hypothetical protein; Provisional
Probab=77.31 E-value=13 Score=24.36 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=26.4
Q ss_pred ceEEeeCCCeEEEEeecCC---CCCCeEEEEECCEEe
Q psy14886 97 SETYAGEGGNVTIFCNPEA---APKPKFVWKKDGNII 130 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~---~p~~~i~W~~~g~~~ 130 (505)
..+.+..|..++|.|++.- ...+.+.|.-|+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 4466889999999999742 235588999998877
No 447
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=77.29 E-value=8.8 Score=27.25 Aligned_cols=59 Identities=14% Similarity=0.254 Sum_probs=35.3
Q ss_pred eEEEEee-cCCCCCCeEEEEE--CCEEecCCCcEEEeeCCC------EEEcCCCCCCCEEEEEEEEcCCCc
Q psy14886 106 NVTIFCN-PEAAPKPKFVWKK--DGNIIGSGGRRKIFENGN------LLISPVSRDDSGIYSCTATNVHGM 167 (505)
Q Consensus 106 ~v~l~C~-~~~~p~~~i~W~~--~g~~~~~~~~~~~~~~~~------l~i~~v~~~d~G~y~C~~~~~~g~ 167 (505)
.+.-.|. +.|.|+..|+|.- +|..- .......+++ +.+......|.-..+|.+......
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~e---tq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~ 89 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEAE---FQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDR 89 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCcee---eeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEecccc
Confidence 3456798 6788999999985 33320 1111112222 445555667777899999865333
No 448
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=75.92 E-value=95 Score=31.53 Aligned_cols=291 Identities=15% Similarity=0.187 Sum_probs=152.2
Q ss_pred CCCceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccC------ceE
Q psy14886 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLK------TRY 76 (505)
Q Consensus 3 ~G~~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~------~~~ 76 (505)
.|+.+.|.+.+.|.-...+...-+|..+... .+. ....+.. + +..+|.|.-.+.-... ...
T Consensus 304 ~g~~I~ika~a~GG~~llYrf~I~G~~~e~~--------~Y~-~~n~~~w---~-P~~~G~Y~I~v~VKDk~S~~eyD~~ 370 (667)
T PRK14081 304 TDTDIELKAVAEGGKELLYRFIIKGKESEDS--------GYI-RNNIYTW---K-PKIAGKYSITLWVKDISSKGEYEDK 370 (667)
T ss_pred cCceEEEEEEecCCCceEEEEEECCcEEeec--------ccc-ccceEEE---e-eCCCceEEEEEEEEcCcCcccccce
Confidence 4778888888876444444443344433311 111 1222322 3 6678999887763221 123
Q ss_pred eeEEEEEEec--CC-CccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEE--EECCEEecCCCcEEEeeCCCEEEcCCCC
Q psy14886 77 SSAQLRVLTL--KP-SFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW--KKDGNIIGSGGRRKIFENGNLLISPVSR 151 (505)
Q Consensus 77 ~~~~l~v~~~--~p-~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W--~~~g~~~~~~~~~~~~~~~~l~i~~v~~ 151 (505)
..+...+... .| .+.-...+..-....|+.+.+.|.+.|.....+.+ .++|..+... ....+..+.+. .
T Consensus 371 ~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~---~Y~~~~~~~f~---P 444 (667)
T PRK14081 371 SSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKI---DYGKNNWVNFI---P 444 (667)
T ss_pred EEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEe---ecccccEEEEE---E
Confidence 3445555542 22 12111111223356799999999998875543332 3477766431 11122334443 3
Q ss_pred CCCEEEEEEEE--cCCC----ceeeeEEEEEEeC-Ceeee--eCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 152 DDSGIYSCTAT--NVHG----MDESKGRLIVLHG-PSYYE--QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 152 ~d~G~y~C~~~--~~~g----~~~~~~~l~v~~~-p~~~~--~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
.-+|.|+..+. +... .....+.+.|... |..+. ..+.......|+.+++.|.+.+.....+.+.-..+|..
T Consensus 445 ~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~ 524 (667)
T PRK14081 445 EEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHK 524 (667)
T ss_pred CCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEE
Confidence 66899988765 2221 1133366777653 43222 22334557889999999999886443444444556766
Q ss_pred ecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecCCc------EEEEEEEEEcCCCCCCCceEEEEEe---CC
Q psy14886 223 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK------ISTKTTVIVEGPPGLPGGVQVVEVH---KT 293 (505)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~g~------~~~~~~l~v~~~p~~p~~~~~~~~~---~~ 293 (505)
....++ .....+.+. +..+|.|+..+...... ....+.+.|..+ .|+.+..+.... --
T Consensus 525 v~~t~Y---------s~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~-~pi~nt~~~~~~~~~~~ 591 (667)
T PRK14081 525 VEETDY---------IKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA-LPITNTKIKTSKKKFKC 591 (667)
T ss_pred EEEeec---------cccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCC-CCceeeEEEeecceEEc
Confidence 543221 112334443 56788998877543332 345567777643 334443332221 12
Q ss_pred eEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEee
Q psy14886 294 SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS 328 (505)
Q Consensus 294 ~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~ 328 (505)
+-.++|..-..+|..+ .|+..... .+.|..+.
T Consensus 592 n~~~t~~~~~~gg~~v-~Yef~v~~--~g~w~~vq 623 (667)
T PRK14081 592 NEEVTFSVKSEGGKDV-CYEFYIME--KGEWKLVQ 623 (667)
T ss_pred CCeEEEEEEccCCCcE-EEEEEEEE--CCcEEEEe
Confidence 3445666555555554 45554433 56787764
No 449
>PHA03282 envelope glycoprotein E; Provisional
Probab=75.88 E-value=74 Score=30.24 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.5
Q ss_pred eCCCEEEcCCCCCCCEEEEEEEEcC
Q psy14886 140 ENGNLLISPVSRDDSGIYSCTATNV 164 (505)
Q Consensus 140 ~~~~l~i~~v~~~d~G~y~C~~~~~ 164 (505)
.+++|.|.+++.+|+|.|+-.+...
T Consensus 122 ~n~tl~l~~a~~~DsG~Y~L~~~~~ 146 (540)
T PHA03282 122 VNGTLVLREARETDSGMYVLSVSRA 146 (540)
T ss_pred ecceEEEeeccccCCceEEEEecCC
Confidence 3778999999999999999987543
No 450
>KOG1026|consensus
Probab=75.60 E-value=5.1 Score=40.57 Aligned_cols=164 Identities=15% Similarity=0.097 Sum_probs=87.8
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEcCCCceeeeEEEEEEe
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~v~~ 178 (505)
..+..|..+++.|.+.+.|.+.+.|+.++............-. ....... .+.|.+.|..+.....+.+.+..
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~------~~~c~~E~~~~~~~~~v~~~~~~ 274 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR-SECEVLE------NDLCIAENAVARSNPSILLVVDL 274 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc-ccceeee------chhhHHHHhhhhcCceeeeEEec
Confidence 4577899999999999999999999987655443221111100 1111111 18899999988888777777755
Q ss_pred CCeeeeeCCCceEEEeeccEEEEEEeeecC-CCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEE
Q psy14886 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEE-LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 257 (505)
Q Consensus 179 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~ 257 (505)
++........... .-.|...+-+ .+.....|..++..+....... .........+........+.+.|+
T Consensus 275 p~~~~~~~~~~~~-------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~t~s~~~~C~~~~~~~h~~~~~~~ 344 (774)
T KOG1026|consen 275 PKAEVLLCSPLSD-------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVC---VTKSGKEQCLPWNDPPHSHNGNYT 344 (774)
T ss_pred ccccccCCCCccc-------cCceeeeeccCCCCCceeeeecCccceEecccc---cccccCcCCcccCcCcccccCcce
Confidence 4333221111100 2223322221 1222334665554432211000 000000012222222456789999
Q ss_pred EEEEecCCcEEEEEEEEEcCCC
Q psy14886 258 CVVKSTVGKISTKTTVIVEGPP 279 (505)
Q Consensus 258 C~~~n~~g~~~~~~~l~v~~~p 279 (505)
|++.+..|.........+...|
T Consensus 345 ~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 345 LFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred eeecccCccccccCcCccccCC
Confidence 9999999987777666665555
No 451
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=75.44 E-value=26 Score=24.87 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=44.0
Q ss_pred ceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEecCCCcEEEeeC---CCEEEcCCCCCCCEEEEEEEEcCCCceeeeEE
Q psy14886 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFEN---GNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173 (505)
Q Consensus 97 ~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~~~~~~~~~~~~---~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~ 173 (505)
....|..|+++.+.|+..=..+..+.|.-.-. +...... ..+.+.+++. | ..-.|.+.-........+.
T Consensus 11 ~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~------k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~~ 82 (91)
T PF03921_consen 11 EEPVVPPGGSVWVNCSTSCPQPEKIGLETSLS------KTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASAN 82 (91)
T ss_dssp SEEEEETTEEEEEEEEESSSS-SEEEEESSSE------EEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEEE
T ss_pred CccEECCCCCEEEEEcCCCCCCCcceEEEecC------CcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEEe
Confidence 55678999999999997432222455542111 1111111 1367788875 4 5667998765444555678
Q ss_pred EEEEeCCe
Q psy14886 174 LIVLHGPS 181 (505)
Q Consensus 174 l~v~~~p~ 181 (505)
++|+..|.
T Consensus 83 ItVY~~Pe 90 (91)
T PF03921_consen 83 ITVYKPPE 90 (91)
T ss_dssp EEEEB--S
T ss_pred eEEeCCCC
Confidence 88876653
No 452
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=75.39 E-value=13 Score=24.24 Aligned_cols=21 Identities=24% Similarity=0.661 Sum_probs=15.3
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR 25 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~ 25 (505)
|..|++++|. |.+...+.|+|
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 3467777776 66667899995
No 453
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=74.28 E-value=9 Score=34.69 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=21.1
Q ss_pred cEEEEEEeeecCCCCeEEEEEeC
Q psy14886 197 NLQLRCSAHTEELLDVAYIWTHN 219 (505)
Q Consensus 197 ~~~l~C~~~~~~~~~~~~~w~~~ 219 (505)
.++|.|.+.+.-+..+.+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999998888999999998
No 454
>PHA03283 envelope glycoprotein E; Provisional
Probab=74.20 E-value=38 Score=32.58 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=30.6
Q ss_pred CCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEe
Q psy14886 47 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLT 85 (505)
Q Consensus 47 ~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 85 (505)
.+.|.|.+++ ..++|.|+-..++..+...+.+.|.|..
T Consensus 133 ~~~l~I~~at-~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRAT-PNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecc-cccCeEEEEEecCCCceEEEEEEEEecC
Confidence 4689999999 9999999999998766455556677764
No 455
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=70.34 E-value=15 Score=26.11 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=37.9
Q ss_pred EEEEEE-eccCCCeEEEEEC--CEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEE
Q psy14886 8 TWTCEA-FGVPDVTYSWFRN--GELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 82 (505)
Q Consensus 8 ~l~C~~-~~~p~~~~~W~~~--~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 82 (505)
.=.|.+ .|.|+..|+|.-+ |.. .. .......+-+.+. +.+.+.... ..|.-.-+|.+.........++.|+
T Consensus 24 VA~CiSa~GrPpa~ItW~t~l~G~~-et-q~~~~~~GT~TV~-S~y~lVPs~-~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 24 VATCVSANGKPPSVVRWDTRLKGEA-EF-QEIRNQNGTVTVI-SRYRLVPSR-EAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEcCCCcCCcEeEEEccCCCce-ee-eeeCCCCCCEEEE-EEEEEeECH-HHcCCEeEEEEEeccccccccEEec
Confidence 346885 5789999999863 321 10 0000112222222 344455555 6677789999986533333344443
No 456
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=68.91 E-value=12 Score=24.28 Aligned_cols=55 Identities=24% Similarity=0.395 Sum_probs=34.3
Q ss_pred EEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEE
Q psy14886 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84 (505)
Q Consensus 8 ~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 84 (505)
+|+|.... ..-+.||-||..|- .+...+|.+.++. ++|+|..+... +.++.+.-.
T Consensus 2 tltC~s~~--sLPiswYcN~TRLl------------Rlt~~Tlt~~~lt-----cNFtCV~qSGh---~hSiWItW~ 56 (71)
T PF11049_consen 2 TLTCPSNA--SLPISWYCNGTRLL------------RLTQQTLTVVTLT-----CNFTCVGQSGH---RHSIWITWY 56 (71)
T ss_pred ceecCCCC--CCcccEEECCceee------------eecCCeEeeeeee-----EEeeecCCCCC---CceEEEEEc
Confidence 57787543 44589999987664 3345677765544 79999865422 234455554
No 457
>PLN02533 probable purple acid phosphatase
Probab=68.61 E-value=61 Score=31.23 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=42.1
Q ss_pred CCCCCCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeecccccee-eee-cCc-eeeEEeeeccCC
Q psy14886 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV-DRY-TGR-KEASIENVLVPW 354 (505)
Q Consensus 278 ~p~~p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~-~~~-~~~-~~~~~~~~L~~~ 354 (505)
.+..|..+.+.-.+.+++.++|.-.... . -.|+|.......+.........-.. ..+ ++. ....+.+ |.|+
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~~~-~----~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~-L~p~ 113 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQDSI-P----PSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGP-LKPN 113 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCCCC-C----CEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCC-CCCC
Confidence 4556666777666788999999865321 1 2355554433333222211110000 001 112 3344555 9999
Q ss_pred ceeEEEEE
Q psy14886 355 STYEFKVI 362 (505)
Q Consensus 355 ~~y~~~v~ 362 (505)
+.|.|||-
T Consensus 114 T~Y~Yrvg 121 (427)
T PLN02533 114 TVYYYKCG 121 (427)
T ss_pred CEEEEEEC
Confidence 99999994
No 458
>KOG3632|consensus
Probab=67.35 E-value=2.5 Score=43.23 Aligned_cols=99 Identities=13% Similarity=0.041 Sum_probs=63.2
Q ss_pred CceeEEEEEEEcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcCCCC
Q psy14886 354 WSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE 433 (505)
Q Consensus 354 ~~~y~~~v~a~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~ 433 (505)
...|...|.+..+.|.+..... +-...+..+..|.++++-..+.++..|+|-+... + .-++.|-... +
T Consensus 642 a~s~~isvq~ltSrGsqd~lrc---~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~ns---n----~~Hviyln~e--E 709 (1335)
T KOG3632|consen 642 AHSGYISVQRLTSRGSQDQLRC---ILLVGGAAPVVPSQLRVWNATQTSAMITWVPFNS---N----FLHVIYLNAE--E 709 (1335)
T ss_pred CCceeeehhhhhccCCCCccee---eEeccccccccchhhhhhhhhchhhheeeeecCC---C----cceeeecCCc--c
Confidence 4466667777888887765543 2222344446889999999999999999987322 2 1123333322 2
Q ss_pred cEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecC
Q psy14886 434 FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND 470 (505)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~ 470 (505)
.. .....-..+++-+|.|++.|.++|-|.-.
T Consensus 710 ~~------ps~a~~y~ytf~~lrpgt~y~a~vea~~p 740 (1335)
T KOG3632|consen 710 PR------PSVAEMYNYTFMRLRPGTDYWASVEAALP 740 (1335)
T ss_pred CC------CchhhhhHHHHhccCCCCccceecccccC
Confidence 11 11112346678899999999999998754
No 459
>PHA03240 envelope glycoprotein M; Provisional
Probab=66.35 E-value=11 Score=31.06 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=38.6
Q ss_pred CCCCCceEEEEEEeccCCCeEEEEE-------C-CE---ECcCCCC----------CCCCCCcEE--EECCeEEEEcCCC
Q psy14886 1 MDNQADLTWTCEAFGVPDVTYSWFR-------N-GE---LLNSETL----------PLEDQDRYF--IQDNVLTIRYLNP 57 (505)
Q Consensus 1 v~~G~~~~l~C~~~~~p~~~~~W~~-------~-~~---~l~~~~~----------~~~~~~~~~--~~~~~L~i~~~~~ 57 (505)
+++|+.|+|.-.---.|--.+.|++ + |. ++=.-.. ....+.++. =.+++|.|.++.
T Consensus 35 ~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~vn- 113 (258)
T PHA03240 35 TREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAHLN- 113 (258)
T ss_pred cccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEEEe-
Confidence 3678899887433223567899999 1 11 1100000 000112222 257899999999
Q ss_pred CCCCeEEEEEE
Q psy14886 58 ERDPAMYQCRA 68 (505)
Q Consensus 58 ~~d~G~Y~C~~ 68 (505)
.+|+|+|.-.-
T Consensus 114 ~sd~~nYcr~k 124 (258)
T PHA03240 114 LSDAGEYCRKK 124 (258)
T ss_pred ecCcchhhhcc
Confidence 99999995443
No 460
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=65.28 E-value=84 Score=26.52 Aligned_cols=95 Identities=17% Similarity=0.283 Sum_probs=48.3
Q ss_pred CeEEEEECCEEecCCC---cEEEeeCC------CEEE-cCCCCCCCEEEEEEEE-cCCCceeeeE----EEEEEeCCeee
Q psy14886 119 PKFVWKKDGNIIGSGG---RRKIFENG------NLLI-SPVSRDDSGIYSCTAT-NVHGMDESKG----RLIVLHGPSYY 183 (505)
Q Consensus 119 ~~i~W~~~g~~~~~~~---~~~~~~~~------~l~i-~~v~~~d~G~y~C~~~-~~~g~~~~~~----~l~v~~~p~~~ 183 (505)
..+.|+.||..+.... ......+| +|.+ .+......=..+|.+. .........+ .-.|..+|.+
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~v- 85 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRV- 85 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEE-
Confidence 4789999998776321 12222233 2444 2222333446899875 2222222222 1222223332
Q ss_pred eeCCCceEEEeeccEEEEEEeeecCCCCeEEEEEeCCEE
Q psy14886 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222 (505)
Q Consensus 184 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~ 222 (505)
.+.. ..-...|.+.--|...+++.|.-++..
T Consensus 86 -------sv~F-~~g~AVC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 86 -------SVRF-EDGYAVCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred -------EEEe-cCCEEEEEcceeeCCCeEEEEEECCcc
Confidence 2222 233467877776655688899876654
No 461
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=59.59 E-value=64 Score=23.29 Aligned_cols=83 Identities=14% Similarity=0.105 Sum_probs=50.5
Q ss_pred CCceEEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEeeeccC----Ccee
Q psy14886 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP----WSTY 357 (505)
Q Consensus 282 p~~~~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~y 357 (505)
|.++.+...+...+..+|.+.... .+-+.|.+.|+......-..+...... .+............ ...|
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~~~-~~~t~y~L~~~~~~~~~~~eC~~y~~~------~~~~~gC~~~~~~~~~~~~~~~ 74 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGKEA-PPDTQYTLYYWYSPLEEEKECPHYSKD------SGTRIGCQFPVSEIDSSEFSQY 74 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCTTC-STTEEEEEEEEETTSSSEEEESEEEES------TSSEEEEEEESCTT-TTTTSEE
T ss_pred CeeCEEEEECCEEEEEEECCCCCC-CCcccEEEEEEcCCCCccccCCCcccc------CCceeEEEecCCCccccccceE
Confidence 456777777889999999976543 234679999988764444444332220 11122233332333 3478
Q ss_pred EEEEEEEcCCCcCC
Q psy14886 358 EFKVIAGNELGYGE 371 (505)
Q Consensus 358 ~~~v~a~n~~G~~~ 371 (505)
.+.|.+.+..|.-.
T Consensus 75 ~v~V~~ss~~~~i~ 88 (99)
T PF09240_consen 75 NVCVNGSSSAGSIR 88 (99)
T ss_dssp EEEEEEEETTEEEE
T ss_pred EEEEEeccCCCccC
Confidence 89999988887654
No 462
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=58.56 E-value=64 Score=22.97 Aligned_cols=79 Identities=11% Similarity=0.175 Sum_probs=43.4
Q ss_pred CCceEEEeeccEEEEEEeeecCCCCeEEEEEeC--CEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEecC
Q psy14886 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN--GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 264 (505)
Q Consensus 187 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n~~ 264 (505)
|+...+..|+++.+.|...-. .|. .+-|... ...+..+ ..=..+.+.+++. .....|.+.=..
T Consensus 10 P~~~vV~~G~Sv~VNCStsC~-~p~-~~GLET~L~k~~~~~g-----------~~W~~f~LsnV~~--ds~~~C~~~C~g 74 (91)
T PF03921_consen 10 PEEPVVPPGGSVWVNCSTSCP-QPE-KIGLETSLSKTELDSG-----------PQWKAFQLSNVTE--DSSPLCFFNCSG 74 (91)
T ss_dssp SSEEEEETTEEEEEEEEESSS-S-S-EEEEESSSEEEEEEEE-----------TTEEEEEEEEE-S--CEEEEEEEEETT
T ss_pred CCccEECCCCCEEEEEcCCCC-CCC-cceEEEecCCcccCCC-----------CcEEEEEEEcccc--CCeEEEEEEcCC
Confidence 556678899999999997543 333 2223221 1111000 0012455666664 467789986544
Q ss_pred CcEEEEEEEEEcCCCC
Q psy14886 265 GKISTKTTVIVEGPPG 280 (505)
Q Consensus 265 g~~~~~~~l~v~~~p~ 280 (505)
.....+..++|..+|.
T Consensus 75 ~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 75 EQSSASANITVYKPPE 90 (91)
T ss_dssp EEEEEEEEEEEEB--S
T ss_pred eEEEeEEeeEEeCCCC
Confidence 4566788888887764
No 463
>PHA03189 UL14 tegument protein; Provisional
Probab=55.45 E-value=74 Score=28.29 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=14.9
Q ss_pred CCCCCCCEEEEEEEEcCCC
Q psy14886 148 PVSRDDSGIYSCTATNVHG 166 (505)
Q Consensus 148 ~v~~~d~G~y~C~~~~~~g 166 (505)
++..+.+|.|.|+..|...
T Consensus 139 ~v~t~taG~Y~CvLrN~tH 157 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETH 157 (348)
T ss_pred EEEecccceEEEEeccccc
Confidence 4556889999999988643
No 464
>PHA03112 IL-18 binding protein; Provisional
Probab=55.40 E-value=69 Score=24.89 Aligned_cols=26 Identities=12% Similarity=0.394 Sum_probs=21.4
Q ss_pred CCCCceEEEEEEecc-CC-CeEEEEECC
Q psy14886 2 DNQADLTWTCEAFGV-PD-VTYSWFRNG 27 (505)
Q Consensus 2 ~~G~~~~l~C~~~~~-p~-~~~~W~~~~ 27 (505)
++|+++.|.|.+-+. |. ..+.|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 689999999999764 64 778999765
No 465
>KOG1225|consensus
Probab=54.64 E-value=24 Score=34.41 Aligned_cols=109 Identities=14% Similarity=0.023 Sum_probs=65.8
Q ss_pred CceeeEEeeeccCCceeEEEEEE-EcCCCcCCCCCCCCCccCCCCCCCCCCceeeeeccccccEEEEEEeCCccccCCCC
Q psy14886 341 GRKEASIENVLVPWSTYEFKVIA-GNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 419 (505)
Q Consensus 341 ~~~~~~~~~~L~~~~~y~~~v~a-~n~~G~~~~s~~~~~~~t~~~~p~~~P~~~~~~~~~~~~v~l~W~~~~~~~~~~~i 419 (505)
........-.|.+++.|..++.+ .+..|...... ...+.. .-+..+.+.....+++.+.|.. +.+. -
T Consensus 415 ~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~---~~~~~~----~~~g~~~v~~~~~~s~e~~g~~--~s~~---~ 482 (525)
T KOG1225|consen 415 GDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKDK---SETTVL----CWNGGLCVDGETESSLEVGGPC--PSSG---T 482 (525)
T ss_pred cceeeeeeeeecCCcceeeehhhhhhhhccCCccc---ccceEe----ecCCceeeeeeeeccccccCCC--CCcc---c
Confidence 34444444449999999999987 44444443221 122212 2345677778889999999987 3333 4
Q ss_pred ceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 420 IYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 420 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
.++.+.|...... ....... ....+.+...+|.|++.|.+.+
T Consensus 483 ~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 483 CGWEVRCGPCGND--GGVNAEP--PPECTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred cceEEEeeecCcc--cccccCC--CCCCCCCCccCcccccceeccc
Confidence 5677777333211 1111111 1145678899999999999865
No 466
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=53.61 E-value=76 Score=22.34 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=38.1
Q ss_pred cccEEEEEEeCCccccCCCCceEEEEEEEcCCC--CcEEEEeeecCce-eeEEEEc-CCccceeeEEEEEEE
Q psy14886 400 IGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT--EFQSETLKEYGNV-GIAVVRI-PSEFYYTEYEVKVQA 467 (505)
Q Consensus 400 ~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l-~~L~p~~~Y~~~v~a 467 (505)
...+.|+|+.. . .....|.|.....+.. ...........+. ....+.+ .+|.++..|.|++..
T Consensus 12 g~~~~I~W~~~--~---~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 12 GQPITITWTSD--G---TDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIVN 78 (93)
T ss_pred CCcEEEEEeCC--C---CCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEEE
Confidence 36799999872 1 1236788888876631 1111222222222 4556666 669999999999994
No 467
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=51.90 E-value=51 Score=20.62 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=19.3
Q ss_pred EcCCccceeeEEEEEEEecCCCCCCCC
Q psy14886 451 RIPSEFYYTEYEVKVQAINDVGPGPES 477 (505)
Q Consensus 451 ~l~~L~p~~~Y~~~v~a~n~~G~g~~s 477 (505)
.+..+ ..-.|.|++.|.+.+|.....
T Consensus 17 t~~~~-~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 17 TVPAL-ADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred eCCCC-CCccEEEEEEEEeCCCCCCCc
Confidence 33334 468999999999999985444
No 468
>PHA03286 envelope glycoprotein E; Provisional
Probab=50.01 E-value=2.4e+02 Score=26.97 Aligned_cols=36 Identities=22% Similarity=0.128 Sum_probs=29.3
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCceeee-EEEEEE
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVL 177 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~ 177 (505)
..|+|.+++.+.+|.|+-...|..|..... +.+.|.
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 459999999999999999999887776665 556664
No 469
>PHA03282 envelope glycoprotein E; Provisional
Probab=47.47 E-value=52 Score=31.20 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.8
Q ss_pred CCcEEEECCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 40 QDRYFIQDNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 40 ~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
..|....+++|.|.+++ .+|+|.|+-.+..
T Consensus 116 ~~rvs~~n~tl~l~~a~-~~DsG~Y~L~~~~ 145 (540)
T PHA03282 116 PPRVAVVNGTLVLREAR-ETDSGMYVLSVSR 145 (540)
T ss_pred CcceeEecceEEEeecc-ccCCceEEEEecC
Confidence 45677788999999999 9999999998753
No 470
>PF14292 SusE: SusE outer membrane protein
Probab=46.56 E-value=1.3e+02 Score=22.83 Aligned_cols=31 Identities=13% Similarity=0.384 Sum_probs=23.4
Q ss_pred cccccEEEEEEeCCccccCC-CCceEEEEEEEcC
Q psy14886 398 GKIGDLSISWEPLPREKQNA-PNIYYKIFWRKKN 430 (505)
Q Consensus 398 ~~~~~v~l~W~~~~~~~~~~-~i~~Y~v~~~~~~ 430 (505)
.....+++.|++ +..+.. ....|.|+....+
T Consensus 42 ~~~~a~tftW~~--~~~~~~~a~v~Y~lq~~~~~ 73 (122)
T PF14292_consen 42 ASDNAVTFTWTA--ADYGGPDAPVTYTLQFDKKG 73 (122)
T ss_pred cCCceEEEEEEC--CccCCCCCceEEEEEEeccC
Confidence 455689999998 555544 5679999998865
No 471
>KOG3834|consensus
Probab=46.18 E-value=31 Score=32.21 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=51.7
Q ss_pred ceeeeeccccccEEEEEEeCCccccCCCCceEEEEEEEcC---CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEE
Q psy14886 391 SRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN---DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKV 465 (505)
Q Consensus 391 ~~~~~~~~~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v 465 (505)
..+.+.+.....+.+.|-. +....+|..++|.|+++..+ ...|+...+.... -..+.+|.+++.|.+-+
T Consensus 66 Vkltv~n~kt~~~R~v~I~-ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~S-----PaalAgl~~~~DYivG~ 137 (462)
T KOG3834|consen 66 VKLTVYNSKTQEVRIVEIV-PSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNS-----PAALAGLRPYTDYIVGI 137 (462)
T ss_pred eEEEEEecccceeEEEEec-ccccccccccceEEEeccCccchhheeeeeecCCCC-----HHHhcccccccceEecc
Confidence 4566666667778888877 46678888999999999875 5567766655422 34678899999999877
No 472
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=45.82 E-value=1e+02 Score=21.62 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=34.7
Q ss_pred ceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceE
Q psy14886 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76 (505)
Q Consensus 6 ~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~ 76 (505)
...|.+.+.+. ...+.|+-||+.+.... ....+.+ . ....|.|+-.+....|...
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~-----------~~~~~~~---~-~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQ-----------PGHQLFW---Q-PDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCC-----------CCCeEEe---C-CCCCeeEEEEEEcCCCCEE
Confidence 44555566554 45999999999984211 1123332 2 4577999999887766653
No 473
>PHA03112 IL-18 binding protein; Provisional
Probab=45.38 E-value=87 Score=24.38 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=20.8
Q ss_pred eeCCCeEEEEeecCCC-CC-CeEEEEECC
Q psy14886 101 AGEGGNVTIFCNPEAA-PK-PKFVWKKDG 127 (505)
Q Consensus 101 v~~g~~v~l~C~~~~~-p~-~~i~W~~~g 127 (505)
..+++++.|+|.+-+. |. .-+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 4568999999998765 53 488999754
No 474
>KOG0200|consensus
Probab=42.62 E-value=1.3e+02 Score=30.68 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=55.7
Q ss_pred ECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEEEecCCC--ccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEE
Q psy14886 46 QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPS--FKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123 (505)
Q Consensus 46 ~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~p~--~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W 123 (505)
....+.+..+. ..|.|.|+|.+.+ ......+. ..... ......+.......+....+ +...+.+.+.|
T Consensus 11 ~~~~~~~~~~~-~~~~~~y~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 80 (609)
T KOG0200|consen 11 NHWFLIIDSVV-PGDKGFYTCLVSN----INLIISLD--DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKW 80 (609)
T ss_pred ccceEEEEEEE-ecCCccEEEEEec----CceeeEee--cccCcccccccCCCCCcceeeccccee---eeecCCCccee
Confidence 45678888888 9999999999988 11112222 11111 11111112222334444444 22222456777
Q ss_pred EECCEEe-----cCC-------------CcEEEeeCCCEEEcCCCCCCCEEEEEEEEc
Q psy14886 124 KKDGNII-----GSG-------------GRRKIFENGNLLISPVSRDDSGIYSCTATN 163 (505)
Q Consensus 124 ~~~g~~~-----~~~-------------~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~ 163 (505)
....... ... .+........+.+.++...+.+.|.|...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 81 GTNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred eeeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 6543211 000 000000112477888999999999998876
No 475
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=41.65 E-value=1.1e+02 Score=22.40 Aligned_cols=56 Identities=7% Similarity=0.003 Sum_probs=38.4
Q ss_pred ccCCCCceEEEEEEEcC-CCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecC
Q psy14886 414 KQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAIND 470 (505)
Q Consensus 414 ~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~ 470 (505)
-..|.+-.|.+.-|... +..|....+..... ....+.|.-|.++..|...+..=..
T Consensus 8 ~L~g~pGeyvviARr~~~G~~Wyvg~in~~~~-r~i~l~L~FL~~g~~y~a~i~~D~~ 64 (103)
T PF14509_consen 8 VLDGYPGEYVVIARRKRDGDDWYVGGINGEDA-RTITLPLSFLDKGKKYTATIYTDGP 64 (103)
T ss_dssp EEEEETTTEEEEEEEETTTTEEEEEEEE-TT--EEEEEEGCCS-TT--EEEEEEEE-T
T ss_pred EeCCcCceEEEEEEEcCCCCCEEEEEeeCCCc-eEEEEECcccCCCCcEEEEEEEeCC
Confidence 34445667888888874 58899877776444 4488899999999999999998765
No 476
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=41.18 E-value=18 Score=24.20 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=10.2
Q ss_pred ccceeeEEEEEEE
Q psy14886 455 EFYYTEYEVKVQA 467 (505)
Q Consensus 455 L~p~~~Y~~~v~a 467 (505)
|+||-.|.|.|+|
T Consensus 67 LEpGgdY~Ftira 79 (80)
T PF11344_consen 67 LEPGGDYSFTIRA 79 (80)
T ss_pred ccCCCceEEEEec
Confidence 6678888888876
No 477
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=40.56 E-value=1.1e+02 Score=20.25 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=35.4
Q ss_pred CeEEEEECCEECcCCCCCCCCCCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEeeEEEEE
Q psy14886 19 VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83 (505)
Q Consensus 19 ~~~~W~~~~~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 83 (505)
....|+++++.+....+... .+++..-+ -..+. +...|..++.+....|..-....+.|
T Consensus 7 v~H~W~~~g~~~~~i~l~i~-g~r~Rt~S----~k~~~-~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 7 VYHRWYKNGKLVARIPLPIS-GGRWRTWS----SKQNF-PDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEECCEEEEEEEEecc-CCCEEEEE----EeecC-CCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 56789999987763322222 23333211 12223 56889999999888777665555444
No 478
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=37.15 E-value=1.6e+02 Score=22.02 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=16.0
Q ss_pred EEcCCccceeeEEEEEEEecCCC
Q psy14886 450 VRIPSEFYYTEYEVKVQAINDVG 472 (505)
Q Consensus 450 ~~l~~L~p~~~Y~~~v~a~n~~G 472 (505)
+....|+|+.+|.+-|.+--..|
T Consensus 35 i~~g~l~pg~tys~li~~d~dvG 57 (113)
T cd01759 35 IFKGTLKPGNTYSAFIDVDVDVG 57 (113)
T ss_pred EEeeeecCCCEEEEEEEccCCCC
Confidence 33435888888888887765555
No 479
>PHA03281 envelope glycoprotein E; Provisional
Probab=35.16 E-value=4.1e+02 Score=26.20 Aligned_cols=39 Identities=8% Similarity=0.130 Sum_probs=28.8
Q ss_pred ECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-eEEEEEEe
Q psy14886 46 QDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLT 85 (505)
Q Consensus 46 ~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~ 85 (505)
..+.|.|.+++ ..++|.|+-..+...|.... .+.|.|..
T Consensus 296 ~~~vL~I~nAT-~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 296 EPGVLKFEHME-AHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred cCCeeEEEecc-cccceeEEEEecCCCCcceeEEEEEEecC
Confidence 34689999999 99999999988865554444 45566653
No 480
>PHA03281 envelope glycoprotein E; Provisional
Probab=31.03 E-value=5.3e+02 Score=25.48 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=28.6
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCceee-eEEEEEEe
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLH 178 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~~~-~~~l~v~~ 178 (505)
+.|.|.+++.+++|.|+-..+...|.... .+.+.|..
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 46899999999999999988866665555 45666654
No 481
>PHA03240 envelope glycoprotein M; Provisional
Probab=29.90 E-value=1.1e+02 Score=25.53 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=17.1
Q ss_pred EEeeCCCeEEEEeecCCCCCCeEEEEE
Q psy14886 99 TYAGEGGNVTIFCNPEAAPKPKFVWKK 125 (505)
Q Consensus 99 ~~v~~g~~v~l~C~~~~~p~~~i~W~~ 125 (505)
+.+.+|++|+|.-.-...|...+.|++
T Consensus 33 vt~r~G~nVTLga~~~lhpgq~v~Wy~ 59 (258)
T PHA03240 33 HTTREGDPLLLGGGHGLGAGQKAHWYK 59 (258)
T ss_pred cccccCCceeeCCcccCCCCCEEEEEe
Confidence 346778888886432222455888887
No 482
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=28.49 E-value=6.7e+02 Score=25.86 Aligned_cols=369 Identities=13% Similarity=0.089 Sum_probs=180.3
Q ss_pred CCCCeEE--EEEEEcccCc----eEeeEEEEEEecCC-CccCCCCCceEEeeCCCeEEEEeecCCCCCCeEEEEECCEEe
Q psy14886 58 ERDPAMY--QCRAKNQLKT----RYSSAQLRVLTLKP-SFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII 130 (505)
Q Consensus 58 ~~d~G~Y--~C~~~~~~~~----~~~~~~l~v~~~~p-~~~~~~~~~~~~v~~g~~v~l~C~~~~~p~~~i~W~~~g~~~ 130 (505)
+..+|.| .|.+...... ........|...+| .+.............|+.+.|...+.|.......+.-.|..+
T Consensus 252 ~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~~llYrf~I~G~~~ 331 (667)
T PRK14081 252 EKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGKELLYRFIIKGKES 331 (667)
T ss_pred eCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCCceEEEEEECCcEE
Confidence 5678988 5666543322 23334444432222 221111111112457899999999988765555554455444
Q ss_pred cCCCcEEEeeCCCEEEcCCCCCCCEEEEEEEEc--CC--Cce--eeeEEEEEEeC---Ceeee--eCCCceEEEeeccEE
Q psy14886 131 GSGGRRKIFENGNLLISPVSRDDSGIYSCTATN--VH--GMD--ESKGRLIVLHG---PSYYE--QLPPKITIAAHRNLQ 199 (505)
Q Consensus 131 ~~~~~~~~~~~~~l~i~~v~~~d~G~y~C~~~~--~~--g~~--~~~~~l~v~~~---p~~~~--~~~~~~~~~~g~~~~ 199 (505)
... ....+..+... ...+|.|...+.- .. +.- ...+...+... |..+. ..+.......|+.+.
T Consensus 332 e~~---~Y~~~n~~~w~---P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~ 405 (667)
T PRK14081 332 EDS---GYIRNNIYTWK---PKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIK 405 (667)
T ss_pred eec---cccccceEEEe---eCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEE
Confidence 221 11112234433 3468889877652 21 111 22345555443 32211 122345667899999
Q ss_pred EEEEeeecCCCCeEEEEEeCCEEecCCCCCcccCCeeeecCCeEEEecCCCCCCEEEEEEEEe--cCCc----EEEEEEE
Q psy14886 200 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS--TVGK----ISTKTTV 273 (505)
Q Consensus 200 l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~n--~~g~----~~~~~~l 273 (505)
+.+.+.+.....+.+.-.++|..+...++ ..+..+.+ .+...|.|+..+.- .... ....+.+
T Consensus 406 i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y---------~~~~~~~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l 473 (667)
T PRK14081 406 IRVIAEGGTNLRYSFIIKKDGKEEEKIDY---------GKNNWVNF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYI 473 (667)
T ss_pred EEEEecCCCeEEEEEEEEECCEEEEEeec---------ccccEEEE---EECCCeeEEEEEEEecccCchhcccceEEEE
Confidence 99999887644444444457777654221 11223333 34678999887743 2222 3455667
Q ss_pred EEcC-CCCCCCce----EEEEEeCCeEEEEeecCCCCCCCCceEEEEEEeCCCCCeEEeeeccccceeeeecCceeeEEe
Q psy14886 274 IVEG-PPGLPGGV----QVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIE 348 (505)
Q Consensus 274 ~v~~-~p~~p~~~----~~~~~~~~~v~l~w~~~~~~~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 348 (505)
.|.. .|..-..+ .....-+..++++.. ..++.. ..++|...-.+.|.....-.. ...+..
T Consensus 474 ~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~--~~~~k~---v~y~y~~~~NG~~v~~t~Ys~----------~~~ysf 538 (667)
T PRK14081 474 KVHEYIPAEIDYILLPVKEYYLVGDDIEIEVI--IQNTKD---VLIKYILKINGHKVEETDYIK----------NKKYKF 538 (667)
T ss_pred EEeccCceeeeeEEecccccEEeCCEEEEEEE--EeCCCe---EEEEEEEEECCEEEEEeeccc----------cceEEE
Confidence 7754 33211110 111234555555554 223322 233344434566665433322 111222
Q ss_pred eeccCCceeEEEEEEEcCCCcCCCCCCC-CCccCCCCCCCCCCceeeeecccc---ccEEEEEEeCCccccCCCCceEEE
Q psy14886 349 NVLVPWSTYEFKVIAGNELGYGEPSSPS-PQYNTPADKPYQAPSRIGGGGGKI---GDLSISWEPLPREKQNAPNIYYKI 424 (505)
Q Consensus 349 ~~L~~~~~y~~~v~a~n~~G~~~~s~~~-~~~~t~~~~p~~~P~~~~~~~~~~---~~v~l~W~~~~~~~~~~~i~~Y~v 424 (505)
. ......|.+-|.|.|....-.....- ..+...++ .|+.+..+..... -...++|.. ...+|.-..|+.
T Consensus 539 ~-P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~---~pi~nt~~~~~~~~~~~n~~~t~~~---~~~gg~~v~Yef 611 (667)
T PRK14081 539 I-PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA---LPITNTKIKTSKKKFKCNEEVTFSV---KSEGGKDVCYEF 611 (667)
T ss_pred e-ecCCceEEEEEEEcccccccccccceEEEEEEcCC---CCceeeEEEeecceEEcCCeEEEEE---EccCCCcEEEEE
Confidence 1 23344666677788887655443321 11222222 2445555432111 124566665 244566668887
Q ss_pred EEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEecCCCC
Q psy14886 425 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP 473 (505)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G~ 473 (505)
+..+.+ +|.....-. . ...+.+.... .-.|.+-|.+-...+.
T Consensus 612 ~v~~~g--~w~~vq~ys--~--k~~ysf~p~~-~g~Y~ilvl~ks~~~k 653 (667)
T PRK14081 612 YIMEKG--EWKLVQKYS--R--KNYYSFMPFN-KGKYKVLVLCKSYYKK 653 (667)
T ss_pred EEEECC--cEEEEeecc--c--cCceEEEecc-CCcEEEEEEEeccccc
Confidence 777744 777544322 1 2233333322 3578888888765543
No 483
>KOG1378|consensus
Probab=28.45 E-value=5.5e+02 Score=24.86 Aligned_cols=36 Identities=19% Similarity=-0.007 Sum_probs=28.6
Q ss_pred eEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecce
Q psy14886 447 IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPL 487 (505)
Q Consensus 447 ~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~ 487 (505)
.....+++|.|++.|..+|-+- +.+|++..++|.|+
T Consensus 108 ih~~~~~~L~~~t~YyY~~Gs~-----~~wS~~f~F~t~p~ 143 (452)
T KOG1378|consen 108 IHDAVMKNLEPNTRYYYQVGSD-----LKWSEIFSFKTPPG 143 (452)
T ss_pred EeeeeecCCCCCceEEEEeCCC-----CCcccceEeECCCC
Confidence 3455789999999999998542 22899999999883
No 484
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=27.77 E-value=1.7e+02 Score=22.62 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCcEEEEeeecCc--------eeeE--EEEcCCccc-eeeEEEEEEEecCCCCCCCC
Q psy14886 423 KIFWRKKNDTEFQSETLKEYGN--------VGIA--VVRIPSEFY-YTEYEVKVQAINDVGPGPES 477 (505)
Q Consensus 423 ~v~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~l~~L~p-~~~Y~~~v~a~n~~G~g~~s 477 (505)
+|++..+++..|.......... -... .+.+.- .+ .-.|.|.++|.+..|.-.+.
T Consensus 45 rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~-~~~~G~~~i~~RA~D~~G~~QP~ 109 (131)
T PF03404_consen 45 RVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPP-PSLPGEYTIMVRATDESGNVQPE 109 (131)
T ss_dssp EEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEE-CSHCCEEEEEEEEEETTS-B--S
T ss_pred EEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCc-CccccceEEEEEEeecccccCCC
Confidence 5666777778888888776543 1222 233322 22 46899999999999987665
No 485
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=27.42 E-value=1.3e+02 Score=24.23 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCCCeEEEEEEEccc
Q psy14886 49 VLTIRYLNPERDPAMYQCRAKNQL 72 (505)
Q Consensus 49 ~L~i~~~~~~~d~G~Y~C~~~~~~ 72 (505)
-|.|.+.+ .+|+|.|.-++.-..
T Consensus 125 lL~i~~p~-~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 125 LLRIRNPR-PEDSGIYYLRVWLDG 147 (161)
T ss_pred EEEeCCCC-cccceEEEEEEEECC
Confidence 49999999 999999999987543
No 486
>KOG1948|consensus
Probab=27.34 E-value=2.9e+02 Score=29.09 Aligned_cols=76 Identities=14% Similarity=0.043 Sum_probs=0.0
Q ss_pred CCCCceEEEEEEEcCCCCcEEEEeeecCceeeEEEEcCCccceeeEEEEEEEe---cCCCCCCCCceEEE----------
Q psy14886 416 NAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI---NDVGPGPESEVVTI---------- 482 (505)
Q Consensus 416 ~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~~~Y~~~v~a~---n~~G~g~~s~~~~~---------- 482 (505)
+.+..+-.|+-...+...+....... ..-.|.|++|.|+..|.++|.+. +.+-++-|...+..
T Consensus 918 Gdp~~gVaieA~sdn~~~y~eeattd----enG~yRiRGL~Pdc~Y~V~vk~~~~n~~iers~P~s~tv~vgneDv~gln 993 (1165)
T KOG1948|consen 918 GDPMKGVAIEALSDNCDLYQEEATTD----ENGTYRIRGLLPDCEYQVHVKSYADNSPIERSFPRSFTVSVGNEDVKGLN 993 (1165)
T ss_pred CCcccCeEEEEecCCCCccccccccc----cCCcEEEeccCCCceEEEEEeeccCCCcccccCCceEEEEecccccCCce
Q ss_pred --eecceEEEEEEEe
Q psy14886 483 --WHDPLVIISYVCQ 495 (505)
Q Consensus 483 --~t~p~~~~~~~~~ 495 (505)
...++-.+.+.|+
T Consensus 994 f~af~q~kttdit~~ 1008 (1165)
T KOG1948|consen 994 FMAFIQAKTTDITVE 1008 (1165)
T ss_pred EEEEeccceEEEEEE
No 487
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=26.06 E-value=1.1e+02 Score=24.16 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=20.1
Q ss_pred eeEEEEcCCccceeeEEEEEEEecC
Q psy14886 446 GIAVVRIPSEFYYTEYEVKVQAIND 470 (505)
Q Consensus 446 ~~~~~~l~~L~p~~~Y~~~v~a~n~ 470 (505)
...-|.+.+|.||+.|.|+-.-.+.
T Consensus 100 rlsaYqVtNL~pGTkY~isY~Vtkg 124 (184)
T PF07353_consen 100 RLSAYQVTNLQPGTKYYISYLVTKG 124 (184)
T ss_pred cceeEEeeccCCCcEEEEEEEEecC
Confidence 3457889999999999998877544
No 488
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=26.05 E-value=1.8e+02 Score=23.39 Aligned_cols=32 Identities=28% Similarity=0.156 Sum_probs=23.9
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCCceeeeEEEE
Q psy14886 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175 (505)
Q Consensus 144 l~i~~v~~~d~G~y~C~~~~~~g~~~~~~~l~ 175 (505)
|.|.+...+|+|.|.-+++-.......-+.+.
T Consensus 126 L~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~ 157 (161)
T PF01688_consen 126 LRIRNPRPEDSGIYYLRVWLDGANKADVFRLS 157 (161)
T ss_pred EEeCCCCcccceEEEEEEEECCCCCCcEEEEe
Confidence 89999999999999999986544444334443
No 489
>PF07532 Big_4: Bacterial Ig-like domain (group 4); InterPro: IPR011081 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.
Probab=25.40 E-value=1.5e+02 Score=18.79 Aligned_cols=29 Identities=21% Similarity=0.536 Sum_probs=18.9
Q ss_pred CCCCCCCCCCceeeee--ccccccEEEEEEe
Q psy14886 381 TPADKPYQAPSRIGGG--GGKIGDLSISWEP 409 (505)
Q Consensus 381 t~~~~p~~~P~~~~~~--~~~~~~v~l~W~~ 409 (505)
+..+..+.-|..+.+. +.+...+.|.|+.
T Consensus 8 ~~~g~~~~LP~~V~v~~~dGs~~~~~V~W~~ 38 (59)
T PF07532_consen 8 TAVGEKPQLPETVTVTYSDGSTEEVPVTWDP 38 (59)
T ss_pred EeCCCcCCCCCEEEEEECCCCEEEEEeEeCC
Confidence 3344444667777664 5555679999986
No 490
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=25.24 E-value=1.7e+02 Score=28.30 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=27.1
Q ss_pred eEEEEcCCccceeeEEEEEEEecCCCCCCCCceEEEeecceE
Q psy14886 447 IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPLV 488 (505)
Q Consensus 447 ~~~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s~~~~~~t~p~~ 488 (505)
.....+.||.|++.|-.|+.|.+..- .+-.++|+|..
T Consensus 100 tv~v~~~gL~P~~~yfYRf~~~~~~s-----pvGrtrTapa~ 136 (522)
T COG3540 100 TVHVDLRGLSPDQDYFYRFKAGDERS-----PVGRTRTAPAP 136 (522)
T ss_pred eEEEeccCCCCCceEEEEEeeCCccc-----cccccccCCCC
Confidence 34668999999999999999977653 33345665543
No 491
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=25.07 E-value=2.7e+02 Score=26.21 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=35.9
Q ss_pred EEEEEEcCCCCcEEEEeeecCc-eeeE--EEEcCCccceeeEEEEEEEecCCCCCCCC
Q psy14886 423 KIFWRKKNDTEFQSETLKEYGN-VGIA--VVRIPSEFYYTEYEVKVQAINDVGPGPES 477 (505)
Q Consensus 423 ~v~~~~~~~~~~~~~~~~~~~~-~~~~--~~~l~~L~p~~~Y~~~v~a~n~~G~g~~s 477 (505)
+|++..+++..|+......... -... .+.+.-..+ -.|++.++|.+..|.-.+.
T Consensus 292 rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~-G~~~l~~RA~D~~G~~QP~ 348 (367)
T cd02114 292 RVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKK-GPLTLMVRATNNDGQTQPL 348 (367)
T ss_pred EEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCC-CcEEEEEEEEcCCCCCCCC
Confidence 5777778888899887753221 1223 333332223 4999999999999997664
No 492
>PHA02935 Hypothetical protein; Provisional
Probab=24.76 E-value=1.8e+02 Score=23.81 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=46.4
Q ss_pred eEEEEECCEECcCCCCCCCC------CCcEEEECCeEEEEcCCCCCCCeEEEEEEEcccCceEe-eEEEEEEecCCCccC
Q psy14886 20 TYSWFRNGELLNSETLPLED------QDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKK 92 (505)
Q Consensus 20 ~~~W~~~~~~l~~~~~~~~~------~~~~~~~~~~L~i~~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~~p~~~~ 92 (505)
.-.|+.+++.+......... -.|..+.-.-|.|..++ -+|+|.|.-...-..|.... ...+.|.+. .+..
T Consensus 68 ytswyyndkvialatedrtsgyissfikrvnisltclnisslr-yedsgsykgvshlkdgvivtttmnisvkan--iidl 144 (349)
T PHA02935 68 YTSWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLR-YEDSGSYKGVSHLKDGVIVTTTMNISVKAN--IIDL 144 (349)
T ss_pred cceeeecCEEEEEeeccccccHHHHHHhhheeeEEEeecccee-eccCCcccCchhhcCceEEEEEEEEEEEee--eEec
Confidence 34799998876532110000 01222233457788999 99999998766555554332 334444431 1111
Q ss_pred CCCCceEEeeCCCeEEEEeecC
Q psy14886 93 RPLESETYAGEGGNVTIFCNPE 114 (505)
Q Consensus 93 ~~~~~~~~v~~g~~v~l~C~~~ 114 (505)
.. ......+.--.+.+.|.+.
T Consensus 145 tg-rvryltrnycevkirceik 165 (349)
T PHA02935 145 TG-RVRYLTRNYCEVKIRCEIK 165 (349)
T ss_pred cc-eeeeeccccEEEEEEEEEe
Confidence 11 1111223334677888754
No 493
>KOG3611|consensus
Probab=24.01 E-value=1.5e+02 Score=30.87 Aligned_cols=62 Identities=13% Similarity=0.238 Sum_probs=35.5
Q ss_pred ceEEEEEEeccCCCeEEEEECCEECcCCCCCCCCCCcEEE-ECCeEEEEcCCCCCCCeEEEEEEEc
Q psy14886 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMYQCRAKN 70 (505)
Q Consensus 6 ~~~l~C~~~~~p~~~~~W~~~~~~l~~~~~~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~~~~ 70 (505)
...|.|...+. ...+.|+.....-... .+.....+... ..+.+.+..++ ..|.|.|.|.+..
T Consensus 571 ~~~l~c~~~~~-~a~~~w~~~~~~~~~~-~~~~~~~~~~~~~~G~lll~~~q-~~~~G~y~c~~~e 633 (737)
T KOG3611|consen 571 SEVLRCVPSSN-QAPVVWYHQSTKDGRK-EEVRQRDVVSRTDEGGLVLLSVQ-KLDGGTYPCYADE 633 (737)
T ss_pred cceeecccccc-ccceeeEeeccCcccc-ceeccCcceeecccCceeEEEEe-eccCccccccccc
Confidence 45777877553 3448898521110000 00002222222 34558889999 9999999999874
No 494
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=22.80 E-value=1.9e+02 Score=27.24 Aligned_cols=57 Identities=11% Similarity=0.029 Sum_probs=37.2
Q ss_pred EEEEEEEcCCCCcEEEEeeecCce-------eeEEEEcC-CccceeeEEEEEEEecCCCCCCCCc
Q psy14886 422 YKIFWRKKNDTEFQSETLKEYGNV-------GIAVVRIP-SEFYYTEYEVKVQAINDVGPGPESE 478 (505)
Q Consensus 422 Y~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~-~L~p~~~Y~~~v~a~n~~G~g~~s~ 478 (505)
-+|++..+++.+|+.......... ......+. .+.++-.|.+.++|.+..|...+-.
T Consensus 279 ~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~QP~~ 343 (365)
T cd02111 279 VRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNVQPET 343 (365)
T ss_pred EEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCcCCCC
Confidence 457777777778887766443221 22333222 2344568999999999999987753
No 495
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.78 E-value=94 Score=29.99 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCEEEcCCCCCCCEEEEEEEEcCCCceeee-EEEEEEeCCee-------------------eeeCCCceEEEeeccEEEE
Q psy14886 142 GNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSY-------------------YEQLPPKITIAAHRNLQLR 201 (505)
Q Consensus 142 ~~l~i~~v~~~d~G~y~C~~~~~~g~~~~~-~~l~v~~~p~~-------------------~~~~~~~~~~~~g~~~~l~ 201 (505)
+.|.|.+++.+|+|.|+-...+..+..... +.|.|..+... ............|+++.+.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~ 168 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS 168 (439)
T ss_dssp ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Q ss_pred EEeeecCCC----CeEEEEEe
Q psy14886 202 CSAHTEELL----DVAYIWTH 218 (505)
Q Consensus 202 C~~~~~~~~----~~~~~w~~ 218 (505)
-........ .+.+.|+.
T Consensus 169 v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 169 VHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp -EEEEEESSS--EEEEEEEEE
T ss_pred EEEEeccCCCCCeeEEEEEEE
No 496
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=21.20 E-value=3.2e+02 Score=25.12 Aligned_cols=71 Identities=13% Similarity=0.009 Sum_probs=43.7
Q ss_pred ccEEEEEEeCCccccCCCCceEEEEEEEcCCCCcEEEEeeecC--ceeeE--EEEcCCccceeeEEEEEEEecCCCCCCC
Q psy14886 401 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG--NVGIA--VVRIPSEFYYTEYEVKVQAINDVGPGPE 476 (505)
Q Consensus 401 ~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~--~~~~~--~~~l~~L~p~~~Y~~~v~a~n~~G~g~~ 476 (505)
..+.|..-. .++...| =+|++..+++.+|......... .-... .+.+. +. .-.|++.++|.+..|.-.+
T Consensus 223 ~~~~i~G~A---~~g~~~I--~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~-~~-~G~~~l~vRA~D~~g~~QP 295 (317)
T cd02110 223 GRVEIGGVA---WSGGRGI--RRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWD-LP-PGEYELVARATDSTGNVQP 295 (317)
T ss_pred CeEEEEEEE---EcCCCCE--EEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEE-cC-CCcEEEEEEEECCCCCcCC
Confidence 345555543 2222333 3588888888899988775433 22223 33332 22 4699999999999999766
Q ss_pred Cc
Q psy14886 477 SE 478 (505)
Q Consensus 477 s~ 478 (505)
..
T Consensus 296 ~~ 297 (317)
T cd02110 296 ER 297 (317)
T ss_pred Cc
Confidence 53
No 497
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=20.45 E-value=2.9e+02 Score=28.89 Aligned_cols=84 Identities=8% Similarity=0.066 Sum_probs=54.3
Q ss_pred ccccEEEEEEeCCccccCCCCceEEEEEEEc--CCCCcEEEEeee----cCceeeEEEEcCCccceeeEEEEEEEecCCC
Q psy14886 399 KIGDLSISWEPLPREKQNAPNIYYKIFWRKK--NDTEFQSETLKE----YGNVGIAVVRIPSEFYYTEYEVKVQAINDVG 472 (505)
Q Consensus 399 ~~~~v~l~W~~~~~~~~~~~i~~Y~v~~~~~--~~~~~~~~~~~~----~~~~~~~~~~l~~L~p~~~Y~~~v~a~n~~G 472 (505)
+.-.+++.|..+-.-..+|..-+|.|+|.-. .++.|....-.. .+.....++.|++|+|.. |.||+.-.+.-.
T Consensus 109 dr~Rv~~gv~sL~~~~~kGD~n~~~V~~~iq~~~~gaw~~~~~~ti~gKtTs~y~~S~~~d~~~~r~-~~vR~~R~T~ds 187 (952)
T COG4733 109 DRLRVTFGVQSLQRTTSKGDRNGYSVRLLIQLQRNGAWVTEKDVTINGKTTSQYLASVILDNLPARP-FNIRMRRETADS 187 (952)
T ss_pred eeEEEEEcchHhhhhhccCCCCCceEEEEEEEecCCceeeeeeeEeccceeeeEEEEEEecCCCCCc-ceEEEEEecCCC
Confidence 3446778887766666778888888877642 244777655432 122234467788888887 999998875544
Q ss_pred C----------CCCCceEEEe
Q psy14886 473 P----------GPESEVVTIW 483 (505)
Q Consensus 473 ~----------g~~s~~~~~~ 483 (505)
. +..+|++...
T Consensus 188 ~s~~l~n~t~~~s~tEiID~k 208 (952)
T COG4733 188 TSDQLQNKTLWSSYTEIIDVK 208 (952)
T ss_pred chhhhhcchhhhhhhheeecc
Confidence 3 4556666653
Done!