RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14886
(505 letters)
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 283 bits (725), Expect = 2e-91
Identities = 85/407 (20%), Positives = 159/407 (39%), Gaps = 37/407 (9%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-------GSGGRRKIF 139
+P + L++ET E G VT+ C+ E P P+ WK+ + GR ++
Sbjct: 1 QPHIIQ--LKNET-TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 57
Query: 140 E---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR 196
+ +L I V DSG Y C A + G + L + + P +
Sbjct: 58 GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKF-ISNQTIYYSWEGN 116
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
+ + C + + W + + + + L+T + +LEI S D G Y
Sbjct: 117 PINISCDVKSNPPASI--HWRRDKLVLPAKNTTNLKTYSTG-RKMILEIAPTSDNDFGRY 173
Query: 257 ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKII 315
C + +G + + + P P GV+++E+ +T+A + + + G PI HY++
Sbjct: 174 NCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD 233
Query: 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ + W V H + + N L P +TYE +V A N G G+ S
Sbjct: 234 VKEVASEIWKIVRSHG---------VQTMVVLNN-LEPNTTYEIRVAAVNGKGQGDYSKI 283
Query: 376 SPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEF 434
P +P +P I G +S ++ AP + Y + +R K+ + ++
Sbjct: 284 EIFQTLPVREP--SPPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQW 339
Query: 435 QSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
+ ++ + + + YEV++ A N +G +
Sbjct: 340 LEKKVQ----GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEF 382
Score = 164 bits (417), Expect = 4e-46
Identities = 77/396 (19%), Positives = 132/396 (33%), Gaps = 56/396 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+T C+A G P +W R + R ++ L I+ + D
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS-DS 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C A +++ S L + P F + Y+ EG + I C+ ++ P
Sbjct: 76 GRYDCEAASRIGGHQKSMYLDIEY-APKFISNQ--TIYYSWEGNPINISCDVKSNPPASI 132
Query: 122 VWKKDGNIIGSGGRRKIFE-----NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
W++D ++ + + L I+P S +D G Y+CTATN G + L +
Sbjct: 133 HWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 192
Query: 177 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT----HNGVRIGN------- 225
PS P ++ ++ V+ + H GV I +
Sbjct: 193 ADVPS-----SPY---------GVKIIELSQTTAKVS--FNKPDSHGGVPIHHYQVDVKE 236
Query: 226 MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG-----KISTKTTVIVEGPPG 280
+ + + ++ + N E + G KI T+ V P
Sbjct: 237 VASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVR-EPS 295
Query: 281 LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYT 340
P + S + T G PI Y + R+ + E + D
Sbjct: 296 -PPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWL--EKKVQGNKDHII 352
Query: 341 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+E+ L YE ++ A N LGY EP+
Sbjct: 353 ------LEH-LQWTMGYEVQITAANRLGYSEPTVYE 381
Score = 78.7 bits (194), Expect = 5e-16
Identities = 51/323 (15%), Positives = 98/323 (30%), Gaps = 70/323 (21%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGL 242
T + + L C A E + ++ W + ++ I +
Sbjct: 7 LKNETTYENGQVTLVCDAEGEPIPEI--TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEV------------ 290
L I + +D+G Y+C S +G + +E P +
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV 124
Query: 291 -HKTSATIQWTDGATNGRPIT---HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 346
A+I W + + + + I D GR
Sbjct: 125 KSNPPASIHWR---RDKLVLPAKNTTNLKTYSTGRKMIL-----EIAPTSDNDFGR---- 172
Query: 347 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-- 404
+ A N +G + AD P +P + KI +LS
Sbjct: 173 ------------YNCTATNHIG----TRFQEYILALADVP-SSPYGV-----KIIELSQT 210
Query: 405 ---ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYT 459
+S+ P P +Y++ ++ ++ ++ +G + V+ P T
Sbjct: 211 TAKVSFNK-PDSHGGVPIHHYQVDVKEVASEIWK--IVRSHGVQTMVVLNNLEP----NT 263
Query: 460 EYEVKVQAINDVGPGPESEVVTI 482
YE++V A+N G G S++
Sbjct: 264 TYEIRVAAVNGKGQGDYSKIEIF 286
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 211 bits (538), Expect = 1e-64
Identities = 72/310 (23%), Positives = 111/310 (35%), Gaps = 29/310 (9%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFE----NG 142
P FK+ N T+ C PKP W + G II G + +I E
Sbjct: 5 PHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV-----LHGPSYYEQLPPKITIAAHRN 197
L+I+ V+ DD+ +Y ATN G L V +H P E +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG-MGAVHALRGEV 121
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 257
+ ++ + + W I + + L+ DAG Y
Sbjct: 122 VSIKIPFSGKPDPVI--TWQKGQDLI--DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 258 CVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIA 316
K+ G + V P P GV+V +V + S + WT+ + G IT+Y +
Sbjct: 178 VCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEK 237
Query: 317 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
W V + ++ N L ++Y+F+VIA N+ G +PS PS
Sbjct: 238 CATTAERWLRVGQ----------ARETRYTVIN-LFGKTSYQFRVIAENKFGLSKPSEPS 286
Query: 377 PQYNTPADKP 386
T DK
Sbjct: 287 EPTITKEDKT 296
Score = 119 bits (301), Expect = 1e-30
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 22/189 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-----LTIRYLNPERD 60
+ T C+ G P W+R G+ + + D +Y IQ+ L I + + D
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEI------IADGLKYRIQEFKGGYHQLIIASVTDD-D 73
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLT----LKPSFKKRPLESETYAGEGGNVTIFCNPEAA 116
+YQ RA NQ + +A L V P + +A G V+I
Sbjct: 74 ATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGM--GAVHALRGEVVSIKIPFSGK 131
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKG 172
P P W+K ++I + G ++ + + + V R D+G Y A N G+D+
Sbjct: 132 PDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191
Query: 173 RLIVLHGPS 181
L V P
Sbjct: 192 ELDVADVPD 200
Score = 68.6 bits (168), Expect = 5e-13
Identities = 56/339 (16%), Positives = 87/339 (25%), Gaps = 89/339 (26%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 244
+ + + N L C W G I L L
Sbjct: 9 EELRNLNVRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKG-GYHQLI 65
Query: 245 ITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL--------PGGVQVVE------- 289
I + + DA Y+ + G +S ++ VE P + G V +
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125
Query: 290 ---VHKTSATIQWTDGATNGRPIT---HYKIIARTNWNSTWFNVSEHVIGKEVDRY-TGR 342
K I W I HY++I ++ S V V+R G
Sbjct: 126 IPFSGKPDPVITWQ---KGQDLIDNNGHYQVIVTRSFTSL-------VFPNGVERKDAGF 175
Query: 343 KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD 402
+ V A N G + + AD P P + K+ D
Sbjct: 176 ----------------YVVCAKNRFGIDQKTV----ELDVADVP-DPPRGV-----KVSD 209
Query: 403 LS-----ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457
+S ++W P + Y + + V + Y
Sbjct: 210 VSRDSVNLTWTE-PASDGGSKITNYIVEKCATTAERWL------------RVGQARETRY 256
Query: 458 -------YTEYEVKVQAINDVGPG---PESEVVTIWHDP 486
T Y+ +V A N G SE D
Sbjct: 257 TVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDK 295
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 211 bits (540), Expect = 4e-62
Identities = 64/277 (23%), Positives = 112/277 (40%), Gaps = 23/277 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDP 61
+ C+ G P++ W+++ +++ ++ + VL + L+ E D
Sbjct: 308 HTRYECKIGGSPEIKVLWYKDET-------EIQESSKFRMSFVESVAVLEMYNLSVE-DS 359
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C A N + SS L+V P F+K+P +G +V + C + P +
Sbjct: 360 GDYTCEAHNAAGSASSSTSLKVKE-PPVFRKKP--HPVETLKGADVHLECELQGTPPFQV 416
Query: 122 VWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
W KD + SG + KI + I V D G Y C A+N G D G + +
Sbjct: 417 SWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA 476
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
P + ++ I+ +QL+ + E + V W + I N + + N
Sbjct: 477 PPRFVKK-LSDISTVVGEEVQLQATIEGAEPISV--AWFKDKGEIVRESDNIWISYSEN- 532
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
L+ + A A+AG+Y C +K+ G T+ V
Sbjct: 533 -IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
Score = 190 bits (485), Expect = 2e-54
Identities = 62/328 (18%), Positives = 118/328 (35%), Gaps = 39/328 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPAM 63
+T C+ G P++ +W++ L S + ++NV L I ++ D
Sbjct: 22 PITLQCKVDGTPEIRIAWYKEHTKLRSA-----PAYKMQFKNNVASLVINKVDHS-DVGE 75
Query: 64 YQCRAKNQLKTRYSSAQLRV--LTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C+A+N + SSA L + L PSF ++ + + G V C + +
Sbjct: 76 YTCKAENSVGAVASSAVLVIKERKLPPSFARKL--KDVHETLGFPVAFECRINGSEPLQV 133
Query: 122 VWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV-- 176
W KDG ++ + L I + G Y+C+A+N G S +L +
Sbjct: 134 SWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSE 193
Query: 177 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
P +++ P + +A + +C + + W + I ++
Sbjct: 194 HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKI--TWAKDNREIRPGGNYKMTLVE- 250
Query: 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP---GLPGGVQVVEVHKT 293
+ L + + DAG+Y C + GK S + V+ PP ++V+ +
Sbjct: 251 --NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEH 308
Query: 294 -----------SATIQWTDGATNGRPIT 310
+ W + I
Sbjct: 309 TRYECKIGGSPEIKVLWY---KDETEIQ 333
Score = 186 bits (474), Expect = 9e-53
Identities = 75/330 (22%), Positives = 120/330 (36%), Gaps = 43/330 (13%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI----QDNVLTIRYLNPERDPAMYQ 65
C G + SW+++GE L+D L I + Y
Sbjct: 122 ECRINGSEPLQVSWYKDGE-------LLKDDANLQTSFIHNVATLQILQTDQS-HVGQYN 173
Query: 66 CRAKNQLKTRYSSAQLRVLT--LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
C A N L T SSA+L + + P F +P G + T C+ K W
Sbjct: 174 CSASNPLGTASSSAKLTLSEHEVPPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITW 231
Query: 124 KKDGNIIGSGGRRKI---FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
KD I GG K+ L + V++ D+G Y+C A+NV G D +L V P
Sbjct: 232 AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 291
Query: 181 SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
+ ++L P + + + C + V +W + I +
Sbjct: 292 RFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV--LWYKDETEIQESSKFRMSFVE---SV 346
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP---GLPGGVQVVE-------- 289
+LE+ N S D+G+Y C + G S+ T++ V+ PP P V+ ++
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC 406
Query: 290 --VHKTSATIQWTDGATNGRPIT---HYKI 314
+ W + R + YKI
Sbjct: 407 ELQGTPPFQVSWH---KDKRELRSGKKYKI 433
Score = 176 bits (447), Expect = 6e-49
Identities = 66/335 (19%), Positives = 110/335 (32%), Gaps = 37/335 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDP 61
T+ C G + +W ++ + Y + LT+ + D
Sbjct: 214 SGTFKCHVTGTAPIKITWAKDNR-------EIRPGGNYKMTLVENTATLTVLKVTKG-DA 265
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C A N SAQL V P F K+ S + + C +P+ K
Sbjct: 266 GQYTCYASNVAGKDSCSAQLGVQE-PPRFIKKLEPSRI-VKQDEHTRYECKIGGSPEIKV 323
Query: 122 VWKKDGNIIGSGGR---RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
+W KD I + + L + +S +DSG Y+C A N G S L V
Sbjct: 324 LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 383
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
P + + P + ++ L C V W + + + ++ +
Sbjct: 384 PPVF-RKKPHPVETLKGADVHLECELQGTPPFQV--SWHKDKRELRSGKKYKIMS---EN 437
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP-------------GLPGGV 285
+ I N AD GEY+C + VG + ++ ++ PP G +
Sbjct: 438 FLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQL 497
Query: 286 QVVEVHKTSATIQWT-DGATNGRPITHYKIIARTN 319
Q ++ W D R + I N
Sbjct: 498 QATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532
Score = 125 bits (315), Expect = 7e-31
Identities = 38/200 (19%), Positives = 71/200 (35%), Gaps = 12/200 (6%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF---ENGNL 144
P F + A G +T+ C + P+ + W K+ + S K+ +L
Sbjct: 6 PYFIEPL--EHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIV--LHGPSYYEQLPPKITIAAHRNLQLRC 202
+I+ V D G Y+C A N G S L++ P + + + + C
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFEC 123
Query: 203 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 262
+ E L V W +G + + + + L+I + G+Y C +
Sbjct: 124 RINGSEPLQV--SWYKDGELL---KDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178
Query: 263 TVGKISTKTTVIVEGPPGLP 282
+G S+ + + P
Sbjct: 179 PLGTASSSAKLTLSEHEVPP 198
Score = 123 bits (311), Expect = 2e-30
Identities = 41/176 (23%), Positives = 60/176 (34%), Gaps = 19/176 (10%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQ 65
CE G P SW ++ L +Y I + I ++ D YQ
Sbjct: 405 ECELQGTPPFQVSWHKDKR-------ELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQ 456
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C+A N + + + + P F K+ S+ G V + E A W K
Sbjct: 457 CKASNDVGSDTCVGSITLKA-PPRFVKKL--SDISTVVGEEVQLQATIEGAEPISVAWFK 513
Query: 126 DGN-IIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
D I+ I + N L S ++G Y+C N G E L VL
Sbjct: 514 DKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 212 bits (541), Expect = 9e-61
Identities = 79/384 (20%), Positives = 132/384 (34%), Gaps = 49/384 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+TC+ G P T SW ++G+ + ++VL I + E D MYQ
Sbjct: 360 PAVFTCQYTGNPIKTVSWMKDGKAIGH-------------SESVLRIESVKKE-DKGMYQ 405
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C +N ++ +SA+L++ R E G +V + C P P+ W+
Sbjct: 406 CFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL 465
Query: 126 DGNIIGSGGRRKIFE--------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
DG I + R ++ + L I+ V +D G+Y C A + G+ E +L V
Sbjct: 466 DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY 525
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
P Y + K I A L + C + + +W + +
Sbjct: 526 GLP--YIRQMEKKAIVAGETLIVTCPVAGYPIDSI--VWERDNRAL-------PINRKQK 574
Query: 238 I-DGGLLEITNASFA-DAGEYECVVKSTVGKISTKT-TVIVEGPPGL--PGGVQVVEVHK 292
+ G L I N D Y CV K+ G + + V V P + +
Sbjct: 575 VFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVG 634
Query: 293 TSATIQWT-DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVL 351
T+ + G I + + + V R +IE V
Sbjct: 635 QYLTLHCSVPGGDLPLNIDWTL-------DGQAISEDLGITTSRVGRRGS--VLTIEAV- 684
Query: 352 VPWSTYEFKVIAGNELGYGEPSSP 375
F A N G+ + ++P
Sbjct: 685 EASHAGNFTCHARNLAGHQQFTTP 708
Score = 184 bits (469), Expect = 8e-51
Identities = 59/281 (20%), Positives = 96/281 (34%), Gaps = 18/281 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L TC G P + W R+ L ++ + + L I + D A Y
Sbjct: 543 TLIVTCPVAGYPIDSIVWERDNRALP------INRKQKVFPNGTLIIENVERNSDQATYT 596
Query: 66 CRAKNQL-KTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVW 123
C AKNQ + S +++V+ P E E A G +T+ C+ P W
Sbjct: 597 CVAKNQEGYSARGSLEVQVMV-LPRIIPFAFE-EGPAQVGQYLTLHCSVPGGDLPLNIDW 654
Query: 124 KKDGNIIGSGGRRKI----FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 179
DG I L I V +G ++C A N+ G + L V
Sbjct: 655 TLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP 714
Query: 180 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
P + + P A + ++ C A V W + ++ NI ++
Sbjct: 715 PRWILE-PTDKAFAQGSDAKVECKADGFPKPQV--TWKKAVGDTPGEYKDLKKSDNIRVE 771
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTT-VIVEGPP 279
G L + N + G Y C + +G + + V+
Sbjct: 772 EGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812
Score = 172 bits (436), Expect = 2e-46
Identities = 70/321 (21%), Positives = 103/321 (32%), Gaps = 33/321 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ C A G P + W++ E + + DR L I+ E D Y
Sbjct: 265 TMALLCPAQGYPVPVFRWYKFIEGTTRKQ-AVVLNDRVKQVSGTLIIKDAVVE-DSGKYL 322
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C N + L V S K P G C P W K
Sbjct: 323 CVVNNSVGGESVETVLTVTA-PLSAKIDP--PTQTVDFGRPAVFTCQYTGNPIKTVSWMK 379
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL--HGPSYY 183
DG IG L I V ++D G+Y C N E+ L + P
Sbjct: 380 DGKAIGHS-------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVI 432
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD-LNELETPNINIDG-G 241
Q + T+ ++ L+C A ++ W +G +I N D + +N D
Sbjct: 433 RQAFQEETMEPGPSVFLKCVAGGNPTPEI--SWELDGKKIANNDRYQVGQYVTVNGDVVS 490
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL--PGGVQVVE---------- 289
L IT+ D G Y+C+ KS VG + V G P + +V
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPV 550
Query: 290 VHKTSATIQWTDGATNGRPIT 310
+I W + R +
Sbjct: 551 AGYPIDSIVWE---RDNRALP 568
Score = 168 bits (426), Expect = 5e-45
Identities = 57/343 (16%), Positives = 94/343 (27%), Gaps = 49/343 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPE-----RD 60
C+A G P W R+ + + R D L E
Sbjct: 56 GAEIECKASGNPMPEIIWIRS----DGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH 111
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA---P 117
+Y C A+NQ + S + ++ ++ + G + I C +
Sbjct: 112 AQVYACLARNQFGSIISRDVHVRAVVAQYYEADV--NKEHVIRGNSAVIKCLIPSFVADF 169
Query: 118 KPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSR-DDSGIYSCTATNVHGMDESK 171
W D G+ + +G L I V D Y C + +
Sbjct: 170 VEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRL 229
Query: 172 GRLIVL--HGPSYYEQLPPKI--------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221
+P + T + + L C A + W
Sbjct: 230 SATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVF--RWYKFIE 287
Query: 222 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 281
+ + G L I +A D+G+Y CVV ++VG S +T + V P
Sbjct: 288 GT-TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 346
Query: 282 PGGVQVVEVHKTS-------------ATIQWTDGATNGRPITH 311
V T+ W +G+ I H
Sbjct: 347 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM---KDGKAIGH 386
Score = 118 bits (298), Expect = 2e-28
Identities = 48/260 (18%), Positives = 87/260 (33%), Gaps = 19/260 (7%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLK-PSFKKRPLESETYAGEGGNVT 108
+ + + ++ A ++ +A K P F K P +
Sbjct: 1 MNMPNERLK-WLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEP-TNRIDFSNSTGAE 58
Query: 109 IFCNPEAAPKPKFVW-KKDGNIIGSG-GRRKIFENGNLLISPVSRDD------SGIYSCT 160
I C P P+ +W + DG +G G R+I +G L+ P +D + +Y+C
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118
Query: 161 ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA--HTEELLDVAYIWTH 218
A N G S+ + YYE K + + ++C + ++V W
Sbjct: 119 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHT 177
Query: 219 NGVRIGNMDLNELETPNINIDGGLLEITNASFADA-GEYECVVKSTVG---KISTKTTVI 274
+ + + G L I D Y+C K + ++S +
Sbjct: 178 DEEENYFPGAEYDGKYLV-LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 236
Query: 275 VEGPPGLPGGVQVVEVHKTS 294
V P +VV + K
Sbjct: 237 VITEPISSAVPKVVSLAKFD 256
Score = 118 bits (298), Expect = 2e-28
Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 13/186 (6%)
Query: 6 DLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
LT C G + W +G+ ++ + R + +VLTI + +
Sbjct: 636 YLTLHCSVPGGDLPLNIDWTLDGQAISED--LGITTSRVGRRGSVLTIEAVEAS-HAGNF 692
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
C A+N + + L V P + P ++ +G + + C + PKP+ WK
Sbjct: 693 TCHARNLAGHQQFTTPLNVYV-PPRWILEP--TDKAFAQGSDAKVECKADGFPKPQVTWK 749
Query: 125 KDGNII------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
K E G L + + + + G Y C A N G S +I +
Sbjct: 750 KAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ 809
Query: 179 GPSYYE 184
++
Sbjct: 810 AHHHHH 815
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 210 bits (536), Expect = 2e-60
Identities = 70/391 (17%), Positives = 129/391 (32%), Gaps = 28/391 (7%)
Query: 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159
G + ++ P +W G+ + R L IS + +
Sbjct: 87 SNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNR------AELAISTFWPNFYQVIFE 140
Query: 160 TATNVHGMDESKGRLIVLHGPSYYEQL---PPKITIAAHRNLQLRCSAHTEELLDVAYIW 216
T+ H + + VL P + + A + +CSA +
Sbjct: 141 VITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGD--RL 198
Query: 217 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGK-ISTKTTVIV 275
G+ + + L E++ + + N + DAG+Y C++++ G IS ++V
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNG-RPITHYKIIARTNWNSTWFNVSEHVIGK 334
+ PP Q+ V T IQ + NG PI ++ T + +W
Sbjct: 259 KEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTA-SGSW---------- 307
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGE-PSSPSPQYNTPADKPYQAPSRI 393
DR + L P + YE V+ G P+ + T P + P ++
Sbjct: 308 -NDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKL 366
Query: 394 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK-NDTEFQSETLKEYGNVGIAVVRI 452
K ++I WEP + + + + E E + I
Sbjct: 367 EVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTI 426
Query: 453 PSEFYYTEYEVKVQAINDVGPGPESEVVTIW 483
+ YT VK+ +N G S+ + +
Sbjct: 427 TNLSPYTNVSVKLILMNPEGRKE-SQELIVQ 456
Score = 134 bits (338), Expect = 1e-33
Identities = 72/500 (14%), Positives = 138/500 (27%), Gaps = 61/500 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L + P W +G+ + L I P +
Sbjct: 93 LLNVYVKVNNGPLGNPIWNISGDPTRT------------WNRAELAISTFWPN-FYQVIF 139
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFK-KRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
+ + + +++VL + G T C+
Sbjct: 140 EVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLW 199
Query: 125 KDGNIIGSGGRRKIFEN------GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
G + ++I + + ++ D+G Y C G+ S +V+
Sbjct: 200 LQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
Query: 179 GPSYYEQLPPKITIAAHR--NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
P PP++ +QL ++ + VA + D +++ +
Sbjct: 260 EPPV-PIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSY 318
Query: 237 NIDGGLLEITNASFADAGEYECVVKSTVGKI-------STKTTVIVEGPPGLPGGVQVVE 289
I L T V+ + G+ + +T P P ++VVE
Sbjct: 319 KIGH-LDPDTEYEI-------SVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVE 370
Query: 290 VHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 346
V TI+W T + + E E + +
Sbjct: 371 VKSRQITIRWEPFGYNVTRC-HSYNLTVHYCYQVGGQEQVREEVSWDTENSHP----QHT 425
Query: 347 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSIS 406
I N L P++ K+I N G S T D P P+ G + +
Sbjct: 426 ITN-LSPYTNVSVKLILMNPEGRK-ESQELIVQ-TDEDLPGAVPTESIQGSTFEEKIFLQ 482
Query: 407 WEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YT 459
W + Y+I ++ + + + + + G V + T
Sbjct: 483 WREPT--QTYGVITLYEITYKAVSSFDPEIDLSNQSGRV---SKLGNETHFLFFGLYPGT 537
Query: 460 EYEVKVQAINDVGPGPESEV 479
Y ++A G GP +
Sbjct: 538 TYSFTIRASTAKGFGPPATN 557
Score = 94.8 bits (235), Expect = 8e-21
Identities = 69/537 (12%), Positives = 142/537 (26%), Gaps = 78/537 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
T+ C A G + G + L + RD Y+
Sbjct: 181 FATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK-RDAGKYR 239
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--KFVW 123
C + + S+ V+ P P + + + + N P
Sbjct: 240 CMIRTEGGVGISNYAELVVKEPPVPIA-PPQLASVGATYLWIQLNANSINGDGPIVAREV 298
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
+ GS R+ ++ + I + D S T GP+
Sbjct: 299 EY-CTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTG------SPGPALR 351
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT------HNGVRIG---------NMDL 228
+ + R L++ + + W
Sbjct: 352 TRTKCADPMRGPRKLEVVEVKSRQ----ITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQE 407
Query: 229 NELETPNINIDGGLLEITNASFADAGEYECVVK--STVGKISTKTTVIV--EGPPGLPG- 283
E + + + + T + + + + G+ ++ ++ E PG
Sbjct: 408 QVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPT 467
Query: 284 GVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRK 343
+ +QW + IT Y+I + +S + V +
Sbjct: 468 ESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAV-SSFDPEIDLSNQSGRVSKLGNET 526
Query: 344 EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDL 403
L P +TY F + A G+G P++ T P P+ D
Sbjct: 527 HFLFFG-LYPGTTYSFTIRASTAKGFGPPATNQFT--TKISAP-SMPAYELETPLNQTDN 582
Query: 404 SISWEPLPREKQNAPNIYYKIFWRKKNDT------------------------------- 432
+++ P + AP Y+I ++
Sbjct: 583 TVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFA 642
Query: 433 -EFQSETLKEYGNVGIAVVRIPSEFY------YTEYEVKVQAINDVGPGPESEVVTI 482
EF +++L+ I + + ++ Y Y + QA + + + V +
Sbjct: 643 AEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQV 699
Score = 42.5 bits (99), Expect = 3e-04
Identities = 17/150 (11%), Positives = 35/150 (23%), Gaps = 34/150 (22%)
Query: 276 EGPPGLPGGVQVVEVHKTSATI--QWTDGATNGRPITHYKIIARTN-------------- 319
P +P +++T T+ + G P++ Y+I+
Sbjct: 563 ISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKC 622
Query: 320 -----------------WNSTWFNVSEHVIGKEVDRYTGRKEASIENV-LVPWSTYEFKV 361
+ + F + + N L+P+ +Y
Sbjct: 623 YPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYF 682
Query: 362 IAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
A + A P P
Sbjct: 683 QAASRANGETKIDCVQVATKGAATPKPVPE 712
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 188 bits (480), Expect = 5e-55
Identities = 73/282 (25%), Positives = 116/282 (41%), Gaps = 26/282 (9%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMY 64
+ CE G P T W +N + LN P+ R + + L I L P D +Y
Sbjct: 138 TVLLKCEVIGDPMPTIHWQKNQQDLN----PIPGDSRVVVLPSGALQISRLQPG-DSGVY 192
Query: 65 QCRAKNQLKTRYS-SAQLRVLTL-----KPSFKKRPLESETYAGEGGNVTIFCNPEAAPK 118
+C A+N TR A++R+L+ + F +RP S A EG + + C P
Sbjct: 193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRP--SNVIAIEGKDAVLECCVSGYPP 250
Query: 119 PKFVWKKDGNII-GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
P F W + +I + + NLLIS V+ DDSG Y+C T + + L V
Sbjct: 251 PSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTV- 309
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
P ++ P + +++ C+ + + V W NG + + +
Sbjct: 310 LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTV--NWMKNGDVV-------IPSDYFQ 360
Query: 238 I-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
I G L I +D G Y+CV ++ G + +IV P
Sbjct: 361 IVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
Score = 174 bits (443), Expect = 9e-50
Identities = 67/334 (20%), Positives = 107/334 (32%), Gaps = 46/334 (13%)
Query: 6 DLTWTCEAFGV-PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER----D 60
++ C A W ++G +L D + + + L I+ + R D
Sbjct: 38 NVLLNCSAESDRGVPVIKWKKDGLILALG----MDDRKQQLPNGSLLIQNILHSRHHKPD 93
Query: 61 PAMYQCRAK-NQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK 118
+YQC A + S +A++ V F + A G V + C P
Sbjct: 94 EGLYQCEASLGDSGSIISRTAKVMVAGP-LRFLSQT--ESITAFMGDTVLLKCEVIGDPM 150
Query: 119 PKFVWKKDGNIIG---SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RL 174
P W+K+ + R + +G L IS + DSG+Y C+A N +
Sbjct: 151 PTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEV 210
Query: 175 IVLHGPSYYE-----QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
+L P + Q P + ++ L C W +
Sbjct: 211 RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSF--TWLRGEE-----VIQ 263
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL---PGGVQ 286
+ G L I+N + D+G Y CVV IS + V PP P +
Sbjct: 264 LRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLY 323
Query: 287 VVE----------VHKTSATIQWTDGATNGRPIT 310
E K T+ W NG +
Sbjct: 324 AYESMDIEFECAVSGKPVPTVNWM---KNGDVVI 354
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 181 bits (461), Expect = 1e-54
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 15/213 (7%)
Query: 274 IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS-TWFNVSEHVI 332
IV+ P P + A I W N PI HY I T++ +W E V
Sbjct: 1 IVQDVPNAPKLT-GITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR 392
+ + PW+ Y F+VIA N++G PS+ S T D P++ P
Sbjct: 60 NTDSSFVVQ---------MSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDN 110
Query: 393 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVR 451
+ G G + +L ISW P+P + NAPN +Y + W++ +++ + + +
Sbjct: 111 VVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIF---DWRQNNIV 167
Query: 452 IPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484
I + + +Y +KV AIND G + + +
Sbjct: 168 IADQPTFVKYLIKVVAINDRGESNVAAEEVVGY 200
Score = 59.7 bits (145), Expect = 2e-10
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 10/112 (8%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
+ P P V + I WT + P HY + + + + + + +
Sbjct: 102 DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNN-IFD 160
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 385
+ I + + Y KV+A N+ G ++ + D+
Sbjct: 161 WRQNNIV------IAD-QPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDR 205
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 181 bits (460), Expect = 2e-53
Identities = 59/283 (20%), Positives = 98/283 (34%), Gaps = 31/283 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDP 61
T+ C G + +W ++ + Y + LT+ + D
Sbjct: 22 SGTFKCHVTGTAPIKITWAKDNR-------EIRPGGNYKMTLVENTATLTVLKVTKG-DA 73
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C A N SAQL V P F K+ E + + C +P+ K
Sbjct: 74 GQYTCYASNVAGKDSCSAQLGVQE-PPRFIKKL-EPSRIVKQDEHTRYECKIGGSPEIKV 131
Query: 122 VWKKDGNIIGSGGRRKIF---ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
+W KD I + ++ L + +S +DSG Y+C A N G S L V
Sbjct: 132 LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
P + ++ P + ++ L C V W + + I
Sbjct: 192 PPVFRKK-PHPVETLKGADVHLECELQGTPPFQV--SWHKDKREL-------RSGKKYKI 241
Query: 239 --DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
+ L + I N AD GEY+C + VG + ++ ++
Sbjct: 242 MSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 142 bits (359), Expect = 7e-39
Identities = 56/255 (21%), Positives = 95/255 (37%), Gaps = 29/255 (11%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE---NGN 143
P F +P G + T C+ K W KD I GG K+
Sbjct: 5 PPFFDLKP--VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 203
L + V++ D+G Y+C A+NV G D +L V P + ++L P + + + C
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 263
+ V +W + I + + +LE+ N S D+G+Y C +
Sbjct: 123 IGGSPEIKV--LWYKDETEI---QESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 177
Query: 264 VGKISTKTTVIVEGPPGL---PGGVQVVE----------VHKTSATIQWTDGATNGRPIT 310
G S+ T++ V+ PP P V+ ++ + W + R +
Sbjct: 178 AGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH---KDKRELR 234
Query: 311 ---HYKIIARTNWNS 322
YKI++ S
Sbjct: 235 SGKKYKIMSENFLTS 249
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 181 bits (461), Expect = 1e-52
Identities = 78/332 (23%), Positives = 119/332 (35%), Gaps = 46/332 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ +CE G P W NG ++ + RY + D L I N +D YQ
Sbjct: 25 KVKLSCEVKGNPKPHIRWKLNGTDVD-----IGMDFRYSVVDGSLLINNPNKTQDAGTYQ 79
Query: 66 CRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVW 123
C A N T S A+L+ L +FK R + + G + + C P + + + W
Sbjct: 80 CIATNSFGTIVSREAKLQFAYL-ENFKTRTRSTVS-VRRGQGMVLLCGPPPHSGELSYAW 137
Query: 124 KKDGNIIGSGGRR-KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL----- 177
+ RR E GNL I+ V + D G Y+C TN + G L
Sbjct: 138 IFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRND 197
Query: 178 -----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNEL 231
+ P Q P + ++L C A + + +W +G I
Sbjct: 198 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTI--LWRRADGKPIAR------ 249
Query: 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL--PGGVQVVE 289
+ G+LEI N DAG YECV +++ GK K + P V
Sbjct: 250 -KARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVA 308
Query: 290 VHKT-----------SATIQWTDGATNGRPIT 310
+ ++ T +W NG P+
Sbjct: 309 MEESVFWECKANGRPKPTYRWL---KNGDPLL 337
Score = 168 bits (426), Expect = 2e-47
Identities = 64/281 (22%), Positives = 107/281 (38%), Gaps = 29/281 (10%)
Query: 6 DLTWTCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAM 63
+ C +++Y+W N +D R+ Q+ L I + D
Sbjct: 119 GMVLLCGPPPHSGELSYAWIFNEYPS------YQDNRRFVSQETGNLYIAKVEKS-DVGN 171
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLK---------PSFKKRPLESETYAGEGGNVTIFCNPE 114
Y C N + L L+ P + + E+ A +G V + C
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVP-AEKGTTVKLECFAL 230
Query: 115 AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174
P P +W++ + R+ NG L I ++D+G Y C A N G + +KG+L
Sbjct: 231 GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 175 IVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETP 234
+ + Q+ I +A ++ C A+ Y W NG + L
Sbjct: 291 TF-YAQPNWVQIINDIHVAMEESVFWECKANGRP--KPTYRWLKNGDPL-------LTRD 340
Query: 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
I I+ G L IT + +DAG Y+CV ++ G I + + V
Sbjct: 341 RIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 132 bits (333), Expect = 2e-34
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 11/172 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ C A G P T W R P+ + R + +L I E D Y+
Sbjct: 222 TVKLECFALGNPVPTILWRRADGK------PIARKARRHKSNGILEIPNFQQE-DAGSYE 274
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C A+N + QL +P++ + ++ + +V C PKP + W K
Sbjct: 275 CVAENSRGKNVAKGQLTFYA-QPNWVQII--NDIHVAMEESVFWECKANGRPKPTYRWLK 331
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+G+ + + R +I E G L I+ V+ D+G+Y C A N HG+ S L V+
Sbjct: 332 NGDPLLTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
Score = 118 bits (297), Expect = 2e-29
Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 13/217 (5%)
Query: 88 PSFKKRPLESETYAG-EGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGNLL 145
P F + P E V + C + PKP WK +G + R +G+LL
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL 65
Query: 146 ISPVSRD-DSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 203
I+ ++ D+G Y C ATN G S + +L + ++ + +++ + + L C
Sbjct: 66 INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCG 125
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 263
+++Y W N + + G L I +D G Y CVV +T
Sbjct: 126 P-PPHSGELSYAWIFNEYPSYQDNRRFVSQET-----GNLYIAKVEKSDVGNYTCVVTNT 179
Query: 264 VG---KISTKTTVIVEGPPGLPGGVQVVEVHKTSATI 297
V + T +I+ + +EV
Sbjct: 180 VTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVP 216
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 175 bits (444), Expect = 5e-51
Identities = 69/291 (23%), Positives = 109/291 (37%), Gaps = 31/291 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN--VLTIRYLNPERDPAM 63
++ C+A G P +W + G+ +NS+ + F + VL I+ L RD +
Sbjct: 23 VASFVCQATGDPKPRVTWNKKGKKVNSQ----RFETIEFDESAGAVLRIQPLRTPRDENV 78
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLK------PSFKKRPLESETYAGEGGNVTIFCNPEAAP 117
Y+C A+N + A+L VL P+ P T+ C P
Sbjct: 79 YECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGP--QLKVVERTRTATMLCAASGNP 136
Query: 118 KPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-- 172
P+ W KD + S GR K +G L I D G Y C ATN G+ S
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPAN 196
Query: 173 -RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 231
+ V + + LP I N+ + C A + V W +
Sbjct: 197 LYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYV--KWMQGAEDL-------T 247
Query: 232 ETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
++ + +LE+T+ D+ Y CV S++G I + V+ P
Sbjct: 248 PEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVKSLPKAG 296
Score = 115 bits (290), Expect = 4e-29
Identities = 47/208 (22%), Positives = 74/208 (35%), Gaps = 19/208 (9%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----ENG 142
P F K P + GG + C PKP+ W K G + S I
Sbjct: 6 PPRFIKEP--KDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 143 NLLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-----PK-ITIAAH 195
L I P+ + D +Y C A N G +L VL P P+ +
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 196 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 255
R + C+A ++ W + + + N + G L+I ++ D G+
Sbjct: 124 RTATMLCAASGNPDPEIT--WFKDFLPVDPSASNGRIKQ---LRSGALQIESSEETDQGK 178
Query: 256 YECVVKSTVG-KISTKTTVIVEGPPGLP 282
YECV ++ G + S+ + V P
Sbjct: 179 YECVATNSAGVRYSSPANLYVRVQNVAP 206
Score = 57.9 bits (140), Expect = 2e-09
Identities = 31/159 (19%), Positives = 49/159 (30%), Gaps = 35/159 (22%)
Query: 187 PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
PP+ + C A + V W G ++ + +E
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRV--TWNKKGKKVNSQRFETIEFDESA-- 61
Query: 240 GGLLEITNASFA-DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGV---------QVVE 289
G +L I D YECV +++VG+I+ + V LP G +VVE
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 290 VHKT-----------SATIQWTDGATNGRPITHYKIIAR 317
+T I W + P+ R
Sbjct: 122 RTRTATMLCAASGNPDPEITWF---KDFLPVDPSASNGR 157
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 182 bits (462), Expect = 1e-50
Identities = 53/275 (19%), Positives = 89/275 (32%), Gaps = 33/275 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+L+ +C A P YSW +G + L I + + + +Y
Sbjct: 398 NLSLSCHAASNPPAQYSWLIDGNIQQH--------------TQELFISNITEK-NSGLYT 442
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF-CNPEAAPKPKFVWK 124
C+A N + + K + + E + F C PEA W
Sbjct: 443 CQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV 502
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYY 183
++ S + N L + V+R+D+ Y C N + S L VL+GP
Sbjct: 503 NGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTP 562
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243
PP + + NL L C + + Y W NG+ + +L
Sbjct: 563 IISPPDSSYLSGANLNLSCHSASNPS--PQYSWRINGIPQQH--------------TQVL 606
Query: 244 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
I + + G Y C V + + +
Sbjct: 607 FIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
Score = 158 bits (400), Expect = 4e-42
Identities = 60/279 (21%), Positives = 90/279 (32%), Gaps = 33/279 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+L +C A P YSWF NG S L I + + Y
Sbjct: 220 NLNLSCHAASNPPAQYSWFVNGTFQQS--------------TQELFIPNITVN-NSGSYT 264
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGN-VTIFCNPEAAPKPKFVWK 124
C+A N + + K + + E + V + C PE W
Sbjct: 265 CQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV 324
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYY 183
+ ++ S + +N L + V+R+D G Y C N +D S L VL+GP
Sbjct: 325 NNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDP 384
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243
P NL L C A + Y W +G L
Sbjct: 385 TISPSYTYYRPGVNLSLSCHAASNPPAQ--YSWLIDGNIQ--------------QHTQEL 428
Query: 244 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
I+N + ++G Y C ++ S T + LP
Sbjct: 429 FISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP 467
Score = 145 bits (368), Expect = 9e-38
Identities = 59/294 (20%), Positives = 89/294 (30%), Gaps = 35/294 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELL------------NSETLPLEDQDRYFIQDN-VLTI 52
++ YSW++ + T R I N L I
Sbjct: 16 EVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLI 75
Query: 53 RYLNPERDPAMYQCRAKN-QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC 111
+ + D Y L ++ Q RV P S+ + V C
Sbjct: 76 QNIIQN-DTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKP-VEDKDAVAFTC 133
Query: 112 NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
PE W + ++ S + N L + V+R+D+ Y C N S
Sbjct: 134 EPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSD 193
Query: 172 G-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE 230
L VL+GP P + + NL L C A Y W NG
Sbjct: 194 SVILNVLYGPDAPTISPLNTSYRSGENLNLSCHA--ASNPPAQYSWFVNGTFQ------- 244
Query: 231 LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPPGLP 282
L I N + ++G Y C ++ + +T TT+ V P P
Sbjct: 245 -------QSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP 291
Score = 105 bits (263), Expect = 3e-24
Identities = 36/203 (17%), Positives = 64/203 (31%), Gaps = 30/203 (14%)
Query: 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-------------------GRRKIF 139
EG V + + + W K + G+ GR I+
Sbjct: 9 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY 68
Query: 140 ENGNLLISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLH-GPSYYEQLPPKITIAAHRN 197
N +LLI + ++D+G Y+ +E+ G+ V P +
Sbjct: 69 PNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDA 128
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 257
+ C T+ D Y+W N L ++ L + N + D Y+
Sbjct: 129 VAFTCEPETQ---DATYLWWVNNQ-----SLPVSPRLQLSNGNRTLTLFNVTRNDTASYK 180
Query: 258 CVVKSTVG-KISTKTTVIVEGPP 279
C ++ V + S + V P
Sbjct: 181 CETQNPVSARRSDSVILNVLYGP 203
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 175 bits (446), Expect = 2e-50
Identities = 75/334 (22%), Positives = 104/334 (31%), Gaps = 50/334 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T TC A P TY W NG L + RY + L I +D YQ
Sbjct: 24 KVTLTCRARANPPATYRWKMNGTELK-----MGPDSRYRLVAGDLVISNPVKAKDAGSYQ 78
Query: 66 CRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVW 123
C A N T S A LR L F + EG V C+ P P + W
Sbjct: 79 CVATNARGTVVSREASLRFGFL-QEFSAEERDPVK-ITEGWGVMFTCSPPPHYPALSYRW 136
Query: 124 KKDGN---IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK--------- 171
+ I G R GNL I+ D G YSC AT+
Sbjct: 137 LLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLS 196
Query: 172 --GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
+ PS + P + + L C A + + W
Sbjct: 197 LAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI--KWRKLDGSQ------ 248
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 289
T LL I N F D G YEC ++ G+ + + +I+ P + E
Sbjct: 249 ---TSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTE 305
Query: 290 VHKTSA-------------TIQWTDGATNGRPIT 310
S ++W +G+P+
Sbjct: 306 ADIGSDLRWSCVASGKPRPAVRWL---RDGQPLA 336
Score = 161 bits (410), Expect = 3e-45
Identities = 64/279 (22%), Positives = 102/279 (36%), Gaps = 29/279 (10%)
Query: 10 TCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCR 67
TC P ++Y W N D R+ Q L I D Y C
Sbjct: 122 TCSPPPHYPALSYRWLLNEFPN----FIPADGRRFVSQTTGNLYIAKTEAS-DLGNYSCF 176
Query: 68 AKNQL----KTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPEAAPK 118
A + + K+ +S L + + + P ++TYA G VT+ C P
Sbjct: 177 ATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPV 236
Query: 119 PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
P+ W+K GS + + L I V +D G Y C A N+ G D +GR+I+ H
Sbjct: 237 PQIKWRKLD---GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII-H 292
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
+ + +L+ C A + A W +G + I +
Sbjct: 293 AQPDWLDVITDTEADIGSDLRWSCVASGKP--RPAVRWLRDGQPLA-------SQNRIEV 343
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
GG L + D+G Y+CV ++ G + + V+
Sbjct: 344 SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 128 bits (324), Expect = 3e-33
Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 14/172 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T C AFG P W + S ++ + +L I+ ++ E D Y+
Sbjct: 224 MVTLECFAFGNPVPQIKWRKLDGSQTS---------KWLSSEPLLHIQNVDFE-DEGTYE 273
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C A+N ++ + +P + ++T A G ++ C P+P W +
Sbjct: 274 CEAENIKGRDTYQGRIIIHA-QPDWLDVI--TDTEADIGSDLRWSCVASGKPRPAVRWLR 330
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
DG + S R ++ G L S + +DSG+Y C A N HG + L V
Sbjct: 331 DGQPLASQNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 110 bits (276), Expect = 1e-26
Identities = 43/192 (22%), Positives = 68/192 (35%), Gaps = 8/192 (4%)
Query: 88 PSFKKRPLESETYAG-EGGNVTIFCNPEAAPKPKFVWKKDGNIIG-SGGRRKIFENGNLL 145
P F+++P + G VT+ C A P + WK +G + R G+L+
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64
Query: 146 I-SPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 203
I +PV D+G Y C ATN G S + L + + + I + CS
Sbjct: 65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCS 124
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 263
++Y W N + ++ G L I +D G Y C S
Sbjct: 125 P-PPHYPALSYRWLLNEFPN---FIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH 180
Query: 264 VGKISTKTTVIV 275
+ I+
Sbjct: 181 IDFITKSVFSKF 192
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 175 bits (446), Expect = 1e-48
Identities = 61/409 (14%), Positives = 123/409 (30%), Gaps = 54/409 (13%)
Query: 104 GGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 156
N T C + VWK + I I + + +
Sbjct: 18 HSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ 77
Query: 157 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPP------KITIAAHRNLQLRCSAHTEELL 210
+C ++++ + ++ LPP + + ++ E L
Sbjct: 78 LTCNILTFGQLEQNVYGITII------SGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL 131
Query: 211 DVAYIWTHNGVRIGNMDLNELETPNIN--IDGGLLEITNASFADAGEYECVVKSTVGKIS 268
+ + D + +D + N E ++ +GK++
Sbjct: 132 ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVN------IEVWVEAENALGKVT 185
Query: 269 TKTTVI---VEGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 323
+ + P P + V E + + WT+ + I Y I RT ST
Sbjct: 186 SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAST 245
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN--T 381
W + +T +++ L P++ Y F++ E G G S S + + T
Sbjct: 246 WSQIPPEDTASTRSSFT------VQD-LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT 298
Query: 382 PADKPYQA----PSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSE 437
D+P +A + + W+ LP + N + Y++ + + Q+
Sbjct: 299 YEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLT-RWKSHLQNY 357
Query: 438 TLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDP 486
T+ V + Y + N VG + + D
Sbjct: 358 TVNAT----KLTVNLT----NDRYLATLTVRNLVGKSDAAVLTIPACDF 398
Score = 87.0 bits (215), Expect = 2e-18
Identities = 36/231 (15%), Positives = 60/231 (25%), Gaps = 23/231 (9%)
Query: 255 EYECVVKST----VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PI 309
Y + + T + P ++WT + + I
Sbjct: 372 RYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYI 431
Query: 310 THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 369
+ +++ T + + L Y V G
Sbjct: 432 LEWCVLSDKAPCITDWQQE----------DGTVHRTYLRGNLAESKCYLITVTPVYADGP 481
Query: 370 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKK 429
G P S P + P+ GK + + W+ LP + QN Y IF+R
Sbjct: 482 GSPESIKAY--LKQAPPSKGPTVRTKKVGK-NEAVLEWDQLPVDVQNGFIRNYTIFYRTI 538
Query: 430 NDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 480
E + + S T Y V++ A D G E
Sbjct: 539 IGNETAVNV-----DSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584
Score = 75.8 bits (186), Expect = 9e-15
Identities = 58/500 (11%), Positives = 119/500 (23%), Gaps = 77/500 (15%)
Query: 12 EAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQ 71
+ F V W N + + I ++ + + C
Sbjct: 33 DYFHVNANYIVWKTNHF-------TIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTF 85
Query: 72 LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP--EAAPKPKFVWKKDGNI 129
+ + + +++ P K + L EG + + E + F K +
Sbjct: 86 GQLEQNVYGITIISGLPPEKPKNLSCIVN--EGKKMRCEWDGGRETHLETNFTLKSEWAT 143
Query: 130 IGSGGRRKIFENGNLLISPVSRD--DSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP 187
+ + S + A N G S ++
Sbjct: 144 HKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDP-----VYKVK 198
Query: 188 PKITIAAHRNLQLRCSAHTEELLDVAYIWT----HNGV---------RIGNMDLNELETP 234
P NL + S +L + WT + + +++
Sbjct: 199 P----NPPHNLSVINSEELSSILKLT--WTNPSIKSVIILKYNIQYRTKDASTWSQIPPE 252
Query: 235 NINIDGGLLEITN-----------ASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 283
+ + + + G+ S T + P
Sbjct: 253 DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYK 312
Query: 284 GVQVVEVHKTSATIQWT--DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
+ + W I Y+ + T W S N +
Sbjct: 313 IDPSHTQGYRTVQLVWKTLPPFEANGKILDYE-VTLTRWKSHLQNYTV------------ 359
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS-PQYNTPADKPYQAPSRIGGGGGKI 400
A+ V + Y + N +G + + + P + A P
Sbjct: 360 --NATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNM-- 415
Query: 401 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-YT 459
L + W PRE + + + ++ +E G V +
Sbjct: 416 --LWVEWTT-PRESVKKYILEWCVLSD---KAPCITDWQQEDGTVHRTY--LRGNLAESK 467
Query: 460 EYEVKVQAINDVGPGPESEV 479
Y + V + GPG +
Sbjct: 468 CYLITVTPVYADGPGSPESI 487
Score = 57.3 bits (138), Expect = 6e-09
Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 21/124 (16%)
Query: 264 VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR--PITHYKIIART--- 318
G + + + PP V+ +V K A ++W + + I +Y I RT
Sbjct: 481 PGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIG 540
Query: 319 NWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 378
N + + S E ++ + L + Y ++ A + G + +
Sbjct: 541 NETAVNVDSSHT-------------EYTLSS-LTSDTLYMVRMAAYTDEGGKDGPEFTFT 586
Query: 379 YNTP 382
TP
Sbjct: 587 --TP 588
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 164 bits (417), Expect = 2e-48
Identities = 49/174 (28%), Positives = 70/174 (40%), Gaps = 12/174 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN--VLTIRYLNPERDPAM 63
T+ C P SW RN L+ RY I++N +LTI + D +
Sbjct: 24 VATFMCAVESYPQPEISWTRNKILIK------LFDTRYSIRENGQLLTILSVEDS-DDGI 76
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
Y C A N + S + +KP + P EG + C PKP W
Sbjct: 77 YCCTANNGVGGAVESCGALQVKMKPKITRPP--INVKIIEGLKAVLPCTTMGNPKPSVSW 134
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIV 176
K + + R + E+G+L I V ++D+G Y C A N G SK +L V
Sbjct: 135 IKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
Score = 124 bits (313), Expect = 2e-33
Identities = 50/195 (25%), Positives = 69/195 (35%), Gaps = 17/195 (8%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGNLL 145
P A T C E+ P+P+ W ++ +I R I ENG LL
Sbjct: 7 APVITTPL--ETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLL 64
Query: 146 -ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 204
I V D GIY CTA N G + + + P + I L C+
Sbjct: 65 TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT 124
Query: 205 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKST 263
V W + E I + + G L I N DAG+Y CV K++
Sbjct: 125 MGNPKPSV--SWIKGDSAL-------RENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNS 175
Query: 264 VGKISTKT---TVIV 275
+G +K V V
Sbjct: 176 LGTAYSKLVKLEVEV 190
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 170 bits (433), Expect = 2e-48
Identities = 71/293 (24%), Positives = 105/293 (35%), Gaps = 32/293 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNP---ERDPA 62
++ CEA G P ++ W RN N + + + L I + + E
Sbjct: 34 NILIECEAKGNPAPSFHWTRNSRFFNIAK---DPRVSMRRRSGTLVIDFRSGGRPEEYEG 90
Query: 63 MYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPK 120
YQC A+N+ T S +L+V P + K L+ EG +T+ CN P P P
Sbjct: 91 EYQCFARNKFGTALSNRIRLQVSKS-PLWPKENLDP-VVVQEGAPLTLQCNPPPGLPSPV 148
Query: 121 FVWKKDGNIIGSGGRR-KIFENGNLLISPVSR-DDSGIYSCTATNVHGMDESKG---RLI 175
W + +R NG+L S V D YSC A + L
Sbjct: 149 IFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLK 208
Query: 176 VLHGPSYYEQLPPKI---------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM 226
VL E+ P + + +L L C A D+ W G + +
Sbjct: 209 VLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDI--AWYKKGGDLPSD 266
Query: 227 DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L ITN S D+GEY C+ + +G I +V V+ P
Sbjct: 267 KAK------FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAP 313
Score = 165 bits (418), Expect = 4e-46
Identities = 60/282 (21%), Positives = 94/282 (33%), Gaps = 25/282 (8%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAM 63
LT C G+P W + P+ R N L + +
Sbjct: 133 PLTLQCNPPPGLPSPVIFWMSSSME------PITQDKRVSQGHNGDLYFSNVMLQDMQTD 186
Query: 64 YQCRAKNQLKTRYSS---AQLRVLTLKPSFKKRP-------LESETYAGEGGNVTIFCNP 113
Y C A+ L+VLT + ++ P S G ++ + C
Sbjct: 187 YSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA 246
Query: 114 EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173
P P W K G + S + N L I+ VS +DSG Y C A+N G
Sbjct: 247 SGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS 306
Query: 174 LIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELET 233
+ V Y+ P + +A + +L C A+ V W NG + + N
Sbjct: 307 VRV-KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTV--QWMVNGEPLQSAPPN---- 359
Query: 234 PNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
PN + G + + + Y+C + G + V V
Sbjct: 360 PNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
Score = 128 bits (324), Expect = 5e-33
Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 12/174 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
DL C A GVP +W++ G L S D+ ++ + L I ++ E D Y
Sbjct: 239 DLLLECIASGVPTPDIAWYKKGGDLPS------DKAKFENFNKALRITNVSEE-DSGEYF 291
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C A N++ + + +RV P + P G + + C PKP W
Sbjct: 292 CLASNKMGSIRHTISVRVKA-APYWLDEP--KNLILAPGEDGRLVCRANGNPKPTVQWMV 348
Query: 126 DGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+G + + ++ +Y C +N HG + + VL
Sbjct: 349 NGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 109 bits (273), Expect = 4e-26
Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 20/218 (9%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGG 134
S Q + P+ K+ + N+ I C + P P F W ++
Sbjct: 7 PSIQNELTQ-PPTITKQSA-KDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP 64
Query: 135 RRKIFE-NGNLLISPVS----RDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPP 188
R + +G L+I S + G Y C A N G S + RL V P + ++
Sbjct: 65 RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLD 124
Query: 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA 248
+ + L L+C+ L W + + D + N G L +N
Sbjct: 125 PVVVQEGAPLTLQCNP-PPGLPSPVIFWMSSSMEPITQDKRVSQGHN-----GDLYFSNV 178
Query: 249 SFADA-GEYECVVKSTVG---KISTKTTVIVEGPPGLP 282
D +Y C + + T+ V G+
Sbjct: 179 MLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVA 216
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 164 bits (417), Expect = 3e-48
Identities = 54/183 (29%), Positives = 78/183 (42%), Gaps = 10/183 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER----DP 61
T C+A G P T W++ GE + ++ R + L + R D
Sbjct: 26 PATLNCKAEGRPTPTIEWYKGGERVETDK-DDPRSHRMLLPSGSLFFLRIVHGRKSRPDE 84
Query: 62 AMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKP 119
+Y C A+N L S A L V L+ F++ P S+ G + C P P+P
Sbjct: 85 GVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP--SDVMVAVGEPAVMECQPPRGHPEP 142
Query: 120 KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLH 178
WKKDG+ + R G L+I+ + D+G Y C TN+ G ES+ L VL
Sbjct: 143 TISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE 202
Query: 179 GPS 181
PS
Sbjct: 203 RPS 205
Score = 129 bits (327), Expect = 3e-35
Identities = 52/213 (24%), Positives = 79/213 (37%), Gaps = 21/213 (9%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG---- 134
LR P + P S+ +G T+ C E P P W K G + +
Sbjct: 1 GSLRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR 58
Query: 135 -RRKIFENGNLLISPV-----SRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLP 187
R + +G+L + SR D G+Y C A N G S L V + Q P
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNP 118
Query: 188 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITN 247
+ +A + C + W +G + + + I I GG L IT
Sbjct: 119 SDVMVAVGEPAVMECQP-PRGHPEPTISWKKDGSPL------DDKDERITIRGGKLMITY 171
Query: 248 ASFADAGEYECVVKSTVGKISTKT-TVIVEGPP 279
+DAG+Y CV + VG+ ++ + V P
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTVLERP 204
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 165 bits (420), Expect = 1e-47
Identities = 57/286 (19%), Positives = 97/286 (33%), Gaps = 32/286 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+TC A G P+ + GE + R +Q LTI N E D
Sbjct: 21 SKFFTCTAIGEPESIDWYNPQGE-------KIISTQRVVVQKEGVRSRLTIYNANIE-DA 72
Query: 62 AMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK 120
+Y+C+A + + L + K +F++ S +G + + C ++P P
Sbjct: 73 GIYRCQATDAKGQTQEATVVLEIYQ-KLTFREVV--SPQEFKQGEDAEVVCRVSSSPAPA 129
Query: 121 FVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCTATN-VHGMDESKGRLIVL 177
W + S R + N NL I +++ D GIY C G + + ++++
Sbjct: 130 VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 189
Query: 178 HGPSYYEQLPPKITIAAHRN--LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235
+ P A R + C A + W NG I E
Sbjct: 190 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI--SWFRNGKLI-------EENEK 240
Query: 236 INI--DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ L + N +D G Y C + G+ + + V
Sbjct: 241 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286
Score = 153 bits (387), Expect = 8e-43
Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 17/188 (9%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMY 64
D C P SW + E + +R+ + +N L I +N D +Y
Sbjct: 115 DAEVVCRVSSSPAPAVSWLYHNE-----EVTTISDNRFAMLANNNLQILNINKS-DEGIY 168
Query: 65 QCRAKNQ-LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
+C + + + ++ + P+ A G +T C +P+P W
Sbjct: 169 RCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISW 228
Query: 124 KKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 182
++G +I + + N L + + D G Y C ATN G DE + L V
Sbjct: 229 FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV------ 282
Query: 183 YEQLPPKI 190
+
Sbjct: 283 --FVQHHH 288
Score = 116 bits (291), Expect = 3e-29
Identities = 37/198 (18%), Positives = 69/198 (34%), Gaps = 15/198 (7%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 144
S+ G + C P+ + G I S R + + G L
Sbjct: 5 LQVTISL--SKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 62
Query: 145 LISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 203
I + +D+GIY C AT+ G + L + + ++ + ++ C
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKL-TFREVVSPQEFKQGEDAEVVCR 121
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-S 262
+ V+ W ++ + + + + L+I N + +D G Y C +
Sbjct: 122 VSSSPAPAVS--WLYHNEEVTTIS----DNRFAMLANNNLQILNINKSDEGIYRCEGRVE 175
Query: 263 TVGKISTKT-TVIVEGPP 279
G+I + VIV PP
Sbjct: 176 ARGEIDFRDIIVIVNVPP 193
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 165 bits (419), Expect = 2e-46
Identities = 67/348 (19%), Positives = 106/348 (30%), Gaps = 52/348 (14%)
Query: 6 DLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
C G V YSW ++G+ N E + L D Y
Sbjct: 23 PTVLECIIEGNDQGVKYSWKKDGKSYN----WQEHNAALRKDEGSLVFLRPQAS-DEGHY 77
Query: 65 QCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFV 122
QC A+ S R L + + E EG + C P A PKP
Sbjct: 78 QCFAETPAGVASSRVISFRKTYL-IASPAKT--HEKTPIEGRPFQLDCVLPNAYPKPLIT 134
Query: 123 WKKDG-------NIIGSGGRRKIFENGNLLISPVSRDDS---GIYSCTATNVHGMDESKG 172
WKK ++ R +GNL + V+++D Y CTA N +E
Sbjct: 135 WKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 194
Query: 173 RLIVL----------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVR 222
+ G + + + A + C + + + NG
Sbjct: 195 VEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYP--NYFKNGKD 252
Query: 223 IGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPPGL 281
+ + + N G L D G Y C V + VGK + + V P
Sbjct: 253 VNGNPEDRITRHNRT-SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKY 311
Query: 282 ---PGGVQVVEVHKT-----------SATIQWTDGATNGRPITHYKII 315
P V VV+ + + + W+ N +P++ +
Sbjct: 312 EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWS---HNAKPLSGGRAT 356
Score = 156 bits (397), Expect = 3e-43
Identities = 48/286 (16%), Positives = 83/286 (29%), Gaps = 32/286 (11%)
Query: 10 TCE-AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPE--RDPAMYQ 65
C P +W + + + R + L + E D Y
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV 180
Query: 66 CRAKNQLKTRYSSAQLRVLTL----------KPSFKKRPLESETYAGEGGNVTIFCNPEA 115
C AKN + +P + + A G I+C +
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVS--KDMMAKAGDVTMIYCMYGS 238
Query: 116 APKPKFVWKKDGNIIGSGGRRKI-----FENGNLLISPVSRDDSGIYSCTATNVHGMDES 170
P + K+G + +I LL +D G+Y+C N G +
Sbjct: 239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298
Query: 171 KG-RLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
+L V+ P Y ++ I + +++ + C +W+HN +
Sbjct: 299 HSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLP--APNVVWSHNAKPLSG---- 352
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ L I D G Y C + G +T V V
Sbjct: 353 ----GRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 127 bits (321), Expect = 1e-32
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 9/173 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMY 64
C P ++F+NG+ +N P + R+ L + PE D +Y
Sbjct: 229 VTMIYCMYGSNPMGYPNYFKNGKDVNGN--PEDRITRHNRTSGKRLLFKTTLPE-DEGVY 285
Query: 65 QCRAKNQL-KTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
C N + K + S +L V++ P ++++P E +G +VTI C P P VW
Sbjct: 286 TCEVDNGVGKPQKHSLKLTVVS-APKYEQKP-EKVIVVKQGQDVTIPCKVTGLPAPNVVW 343
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ + SGGR + + L+I V D G Y C ATN HG + + V
Sbjct: 344 SHNAKPL-SGGRATV-TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 105 bits (264), Expect = 6e-25
Identities = 38/209 (18%), Positives = 56/209 (26%), Gaps = 11/209 (5%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNII--GSGGRRKIFENGN 143
P K +P +E E + C E + K+ WKKDG + G+
Sbjct: 6 YPVLKDQP--AEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 203
L+ D G Y C A G+ S+ + T R QL C
Sbjct: 64 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCV 123
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADA---GEYECV 259
W I G L T + D +Y C
Sbjct: 124 L-PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182
Query: 260 VKSTVG-KISTKTTVIVEGPPGLPGGVQV 287
K+ + ++G G +
Sbjct: 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKG 211
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 159 bits (403), Expect = 3e-46
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 22/184 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
+ T C+ G P W+R G+ + + D +Y IQ+ L I + + D
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEI------IADGLKYRIQEFKGGYHQLIIASVTDD-D 73
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVL----TLKPSFKKRPLESETYAGEGGNVTIFCNPEAA 116
+YQ RA NQ + +A L V P + +A G V+I
Sbjct: 74 ATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGM--GAVHALRGEVVSIKIPFSGK 131
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKG 172
P P W+K ++I + G ++ + + + V R D+G Y A N G+D+
Sbjct: 132 PDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191
Query: 173 RLIV 176
L V
Sbjct: 192 ELDV 195
Score = 112 bits (281), Expect = 6e-29
Identities = 41/209 (19%), Positives = 60/209 (28%), Gaps = 37/209 (17%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN--- 143
P FK+ N T+ C PKP W + G II G + +I E
Sbjct: 5 PHFKEEL--RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL-----HGPSYYEQLPPKITIAAHRN 197
L+I+ V+ DD+ +Y ATN G L V H P E +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG-MGAVHALRGEV 121
Query: 198 LQLRCSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINI--DGG---LLEITN 247
+ ++ W I + + L+
Sbjct: 122 VSIKIPF-------SGKPDPVITWQKGQDLID-------NNGHYQVIVTRSFTSLVFPNG 167
Query: 248 ASFADAGEYECVVKSTVGKISTKTTVIVE 276
DAG Y K+ G + V
Sbjct: 168 VERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 52.4 bits (126), Expect = 5e-08
Identities = 22/123 (17%), Positives = 34/123 (27%), Gaps = 25/123 (20%)
Query: 214 YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV 273
W G I L L I + + DA Y+ + G +S ++
Sbjct: 36 VKWYRQGKEIIADGLKYRIQEFKG-GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
Query: 274 IVEGPPGLPG-----GVQVVEVHKTS-------------ATIQWTDGATNGRPIT---HY 312
VE P + G+ V + I W I HY
Sbjct: 95 EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQ---KGQDLIDNNGHY 151
Query: 313 KII 315
++I
Sbjct: 152 QVI 154
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 159 bits (403), Expect = 3e-44
Identities = 57/343 (16%), Positives = 95/343 (27%), Gaps = 50/343 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER-----D 60
C+A G P W R+ + + R D L E
Sbjct: 21 GAEIECKASGNPMPEIIWIRS----DGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH 76
Query: 61 PAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA--- 116
+Y C A+NQ + S +R + ++ ++ + G + I C +
Sbjct: 77 AQVYACLARNQFGSIISRDVHVRAVVA-QYYEADV--NKEHVIRGNSAVIKCLIPSFVAD 133
Query: 117 PKPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSRDDS-GIYSCTATNVHGMDES 170
W D G+ + +G L I V +D Y C + +
Sbjct: 134 FVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETR 193
Query: 171 KGRLIVL---------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221
P + + + + L C A W
Sbjct: 194 LSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSF--RWYKFIE 251
Query: 222 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 281
+ + G L I +A D+G+Y CVV ++VG S +T + V P
Sbjct: 252 GT-TRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSA 310
Query: 282 PGGVQVVEVHKTSA-------------TIQWTDGATNGRPITH 311
V T+ W +G+ I H
Sbjct: 311 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM---KDGKAIGH 350
Score = 157 bits (398), Expect = 2e-43
Identities = 60/286 (20%), Positives = 96/286 (33%), Gaps = 34/286 (11%)
Query: 6 DLTWTCEA---FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDP 61
C SW + E E +Y + + L IR + PE
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFP--GAEYDGKYLVLPSGELHIREVGPEDGY 177
Query: 62 AMYQCRAKNQL--KTRYSSAQLRVLTLKPSFKKRP-----LESETYAGEGGNVTIFCNPE 114
YQCR K++L +TR S+ + R++ +P P ++ +++ C +
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ 237
Query: 115 AAPKPKFVWKKDGNIIGSG-----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE 169
P P F W K R +G L+I +DSG Y C N G +
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 297
Query: 170 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
+ L V P + PP T+ R C + V W +G IG+
Sbjct: 298 VETVLTV-TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV--SWMKDGKAIGH---- 350
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+L I + D G Y+C V++ + +
Sbjct: 351 ---------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 105 bits (262), Expect = 8e-25
Identities = 42/206 (20%), Positives = 71/206 (34%), Gaps = 17/206 (8%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW-KKDGNIIGSG-GRRKIFENGNLL 145
P F K P + I C P P+ +W + DG +G G R+I +G L+
Sbjct: 4 PVFLKEP-TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62
Query: 146 ISPVS------RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 199
P + +Y+C A N G S+ + YYE K + +
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 122
Query: 200 LRCSA--HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA-GEY 256
++C + ++V W + E + + + G L I D Y
Sbjct: 123 IKCLIPSFVADFVEV-VSWHTDEEEN-YFPGAEYDGKYLVLPSGELHIREVGPEDGYKSY 180
Query: 257 ECVVKSTVG---KISTKTTVIVEGPP 279
+C K + ++S +V P
Sbjct: 181 QCRTKHRLTGETRLSATKGRLVITEP 206
Score = 48.8 bits (116), Expect = 3e-06
Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 13/120 (10%)
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
GP + ++ +I + ++ C A + IW + + ++
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPM--PEIIWIRSDGTA----VGDVPGLRQIS 56
Query: 239 DGGLLEITNAS------FADAGEYECVVKSTVGKI-STKTTVIVEGPPGLPGGVQVVEVH 291
G L A Y C+ ++ G I S V V V
Sbjct: 57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI 116
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 152 bits (386), Expect = 6e-44
Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 9/175 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMY 64
D C P SW + E + +R+ + +N L I +N D +Y
Sbjct: 19 DAEVVCRVSSSPAPAVSWLYHNE-----EVTTISDNRFAMLANNNLQILNINKS-DEGIY 72
Query: 65 QCRAKNQ-LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
+C + + + ++ + P+ A G +T C +P+P W
Sbjct: 73 RCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISW 132
Query: 124 KKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
++G +I + + N L + + D G Y C ATN G DE + L V
Sbjct: 133 FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 121 bits (305), Expect = 2e-32
Identities = 37/198 (18%), Positives = 66/198 (33%), Gaps = 24/198 (12%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLL 145
+F++ S +G + + C ++P P W + S R + N NL
Sbjct: 3 LTFREVV--SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 60
Query: 146 ISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLHGP--SYYEQLPPKITIAAHRNLQLRC 202
I +++ D GIY C G + + +++++ P Q T + C
Sbjct: 61 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 120
Query: 203 SAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE 257
A W NG I + L+ L + N +D G Y
Sbjct: 121 RASGSPEPA-------ISWFRNGKLIEENEKYILKG-----SNTELTVRNIINSDGGPYV 168
Query: 258 CVVKSTVGKISTKTTVIV 275
C + G+ + + V
Sbjct: 169 CRATNKAGEDEKQAFLQV 186
Score = 45.5 bits (108), Expect = 8e-06
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 18/103 (17%)
Query: 184 EQLPPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
++ + ++ C W ++ + + N +
Sbjct: 6 REVVSPQEFKQGEDAEVVCRVSSSPAPA-------VSWLYHNEEVTTISDNRFAM----L 54
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPP 279
L+I N + +D G Y C + VIV PP
Sbjct: 55 ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPP 97
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 156 bits (396), Expect = 1e-43
Identities = 55/293 (18%), Positives = 99/293 (33%), Gaps = 32/293 (10%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
+ A P + +W +N T+P E++ R + QD L + E D Y C
Sbjct: 44 PYWLWASVSPRINLTWHKNDSAR---TVPGEEETRMWAQDGALWLLPALQE-DSGTYVCT 99
Query: 68 AKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-----PEAAPKPKFV 122
+N S +LRV +F + + + C K
Sbjct: 100 TRNASYCDKMSIELRVFENTDAFLPFISYPQILT-LSTSGVLVCPDLSEFTRDKTDVKIQ 158
Query: 123 WKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV-LHG 179
W KD ++ + + +LL+ V+ +D+G Y C T H + + L
Sbjct: 159 WYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI 218
Query: 180 PSYYEQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYI--WTHNGVRIGNMD--- 227
E+ P I + + L + C + + WT N I +
Sbjct: 219 KKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGG 278
Query: 228 -LNELETPNINIDGGL-----LEITNASFADAG-EYECVVKSTVGKISTKTTV 273
+ E + + L + D +++CVV +T+ + +TTV
Sbjct: 279 RVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 107 bits (267), Expect = 1e-25
Identities = 48/312 (15%), Positives = 89/312 (28%), Gaps = 36/312 (11%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNP-------EAAPKPKFVWKKDGNII---GSGGRRK 137
+ + EG V + C +P+ W K+ + G R
Sbjct: 19 RFRGRHY--KREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM 76
Query: 138 IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS-YYEQLPPKITIAAHR 196
++G L + P ++DSG Y CT N D+ L V + + +
Sbjct: 77 WAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST 136
Query: 197 NLQLRCSAHTEELLDV---AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA 253
+ L C +E D W + + + + L L + + + DA
Sbjct: 137 SGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG----TTHLLVHDVALEDA 192
Query: 254 GEYECVVKSTVGKISTKTTVIVE---------GPPGLPGGVQVVEVHK-TSATIQWTDGA 303
G Y CV+ T +E P + ++ + + TI
Sbjct: 193 GYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFL 252
Query: 304 TNGRP---ITHYKI---IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTY 357
G P + + + + E + + V
Sbjct: 253 GTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHM 312
Query: 358 EFKVIAGNELGY 369
+FK + N L +
Sbjct: 313 DFKCVVHNTLSF 324
Score = 34.3 bits (78), Expect = 0.079
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 13/91 (14%)
Query: 6 DLTWTCEAF---GVPDVTYSWFRNGELLNSETLP----LEDQDRYFIQDN------VLTI 52
LT C+ F G P T W+ + P E + + ++N L
Sbjct: 243 RLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIF 302
Query: 53 RYLNPERDPAMYQCRAKNQLKTRYSSAQLRV 83
+ E ++C N L + ++
Sbjct: 303 DPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 151 bits (384), Expect = 3e-43
Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNP---ERDPA 62
T C+ G P+ T WF++GE +++ + R +D L E+D
Sbjct: 26 PATLNCKVEGKPEPTIEWFKDGEPVSTNE---KKSHRVQFKDGALFFYRTMQGKKEQDGG 82
Query: 63 MYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPK 120
Y C AKN++ S A L++ L+ F+ P +T +G + C P+ P+P
Sbjct: 83 EYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEP--KDTRVAKGETALLECGPPKGIPEPT 140
Query: 121 FVWKKDGNII--------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK- 171
+W KDG + G+ R +I + GNLLIS V D G Y C A N+ G ES
Sbjct: 141 LIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSY 200
Query: 172 GRLIVLHGPS 181
+LIV +
Sbjct: 201 AKLIVQVKAA 210
Score = 120 bits (302), Expect = 1e-31
Identities = 51/218 (23%), Positives = 79/218 (36%), Gaps = 20/218 (9%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG---R 135
A L P + P ++ + T+ C E P+P W KDG + +
Sbjct: 1 APLAGQYQSPRIIEHP--TDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSH 58
Query: 136 RKIFENGNLL----ISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKI 190
R F++G L + D G Y C A N G S L + + P
Sbjct: 59 RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDT 118
Query: 191 TIAAHRNLQLRC---SAHTEELLDVAYIWTHNGVRI-GNMDLNELETPNINI-DGGLLEI 245
+A L C E IW +GV + ++ + + I DGG L I
Sbjct: 119 RVAKGETALLECGPPKGIPE----PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI 174
Query: 246 TNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGLP 282
+N D G Y+C+ ++ VG S+ +IV+
Sbjct: 175 SNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212
Score = 59.5 bits (144), Expect = 2e-10
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 10 TC-EAFGVPDVTYSWFRNGELLN-SETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQC 66
C G+P+ T W ++G L+ + + R I D L I + P D Y+C
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI-DEGNYKC 187
Query: 67 RAKNQLKTRYSS-AQLRVLTLKPSFKKRP 94
A+N + TR SS A+L V +K +
Sbjct: 188 IAQNLVGTRESSYAKLIVQ-VKAAAHHHH 215
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 153 bits (388), Expect = 8e-43
Identities = 50/311 (16%), Positives = 92/311 (29%), Gaps = 59/311 (18%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPA 62
L + C+ P +SW ++ ED R ++ +T + L + D
Sbjct: 21 LNFECDK-MTPKSEFSWSKDYV-------STEDSPRLEVESKGNKTKMTFKDLGMD-DLG 71
Query: 63 MYQCRAKNQLKTRYSSAQL-----------RVLTLKPSFKKRPLESETYAGEGGNVTIFC 111
+Y C + S K L E E G V +
Sbjct: 72 IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE--ILEKGQVRFWM 129
Query: 112 NPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTATNVH 165
E K + + I G + K+ + N + + + +D G Y+ +
Sbjct: 130 QAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK 189
Query: 166 GMDESKGRLIVLHGPSYYEQL-----------------PPKITIAAHRNLQLRCSAHTEE 208
+ S L+ ++ + N+ L+C
Sbjct: 190 ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV-ANI 248
Query: 209 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGK 266
+ +W + I + G+ L IT S DAG YE ++K GK
Sbjct: 249 KKETHIVWYKDEREI-------SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK 301
Query: 267 ISTKTTVIVEG 277
++ ++ E
Sbjct: 302 DKSRLKLVDEA 312
Score = 103 bits (257), Expect = 1e-24
Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 21/212 (9%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-- 143
+ P K+ ++ C + PK +F W KD R ++ GN
Sbjct: 2 IDPFTKEVV--VNVDDDGVISLNFEC-DKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKT 58
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV-LHGPSYYEQLPPKITIAAHRNLQLR 201
+ + DD GIYSC T+ G+ S L T+ L +
Sbjct: 59 KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE 118
Query: 202 CSAHTEELLDV---------AYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASF 250
+ + + N I ++ +I+ + G+ + +
Sbjct: 119 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKM---HIDRNTGIIEMFMEKLQD 175
Query: 251 ADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
D G Y ++ + ++ + L
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ 207
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 152 bits (386), Expect = 8e-43
Identities = 61/288 (21%), Positives = 107/288 (37%), Gaps = 36/288 (12%)
Query: 6 DLTWTCEAFGVPDV-TYSWFR-NGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPE 58
+ C+ G SWF NGE L+ +Q R + N LTI N +
Sbjct: 19 SKFFLCQVAGDAKDKDISWFSPNGEKLSP------NQQRISVVWNDDDSSTLTIYNANID 72
Query: 59 RDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP 117
D +Y+C + T+ + +++ K FK P + EG + I C+ ++
Sbjct: 73 -DAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAP--TPQEFKEGEDAVIVCDVVSSL 128
Query: 118 KPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
P +WK G + R + N L I + + D G Y C + + + +
Sbjct: 129 PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
Query: 176 V-LHGPSYYEQLPPKITIAAH--RNLQLRCSAHTEELLDVAY-----IWTHNGVRIGNMD 227
V ++ P + + A+ +++ L C A + WT +G I +
Sbjct: 189 VIVNVPPTVQARQSIVNATANLGQSVTLVCDAD-------GFPEPTMSWTKDGEPI-ENE 240
Query: 228 LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ E + D L I N D EY C+ ++ G+ + V
Sbjct: 241 EEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 139 bits (352), Expect = 8e-38
Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 13/179 (7%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-DNVLTIRYLNPERDPAMY 64
D C+ T W G + L+ R+ + +N L IR + D Y
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGR-----DVILKKDVRFIVLSNNYLQIRGIKKT-DEGTY 170
Query: 65 QCRAKNQLKTRYSSAQLRVLTL-KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
+C + + + ++V+ P+ + R A G +VT+ C+ + P+P W
Sbjct: 171 RCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSW 230
Query: 124 KKDGNIIGSGG-----RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
KDG I + ++ L I V ++D Y C A N G ++ L V
Sbjct: 231 TKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Score = 103 bits (258), Expect = 7e-25
Identities = 34/202 (16%), Positives = 52/202 (25%), Gaps = 19/202 (9%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGN--IIGSGGRRKIFEN--- 141
P S+ G + C K W + + R + N
Sbjct: 3 LQVDIVP--SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 142 -GNLLISPVSRDDSGIYSCTATNVHGMDES-KGRLIVLHGPSYYEQLPPKITIAAHRNLQ 199
L I + DD+GIY C T G + + + P +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA-PTPQEFKEGEDAV 119
Query: 200 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 259
+ C + + W H G + + L+I D G Y C
Sbjct: 120 IVCDVVSSLPPTII--WKHKGRDVILKKDVRFIV----LSNNYLQIRGIKKTDEGTYRCE 173
Query: 260 VKSTVGK--ISTKTTVIVEGPP 279
+ VIV PP
Sbjct: 174 GRILARGEINFKDIQVIVNVPP 195
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 155 bits (394), Expect = 1e-42
Identities = 32/282 (11%), Positives = 78/282 (27%), Gaps = 33/282 (11%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
C + VP+ W S+ +++ ++ + E +C
Sbjct: 158 ALVCISESVPEPIVEWVLCD----SQGESCKEESPAVVKKEEKVLH----ELFGTDIRCC 209
Query: 68 AKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNP-EAAPKPKFVWKKD 126
A+N+L + L P + + G + I C W+ +
Sbjct: 210 ARNELGRECTRLFTIDLNQTPQTTL----PQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265
Query: 127 GNIIGSGGRRKI---------FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+ G ++ +S V+R+D+G Y+C+++ + ++
Sbjct: 266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIV 322
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
+ + + S + + WT +
Sbjct: 323 E-KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC-------EQKGL 374
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+G + GEY ++ + + T+ +
Sbjct: 375 DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
Score = 139 bits (352), Expect = 8e-37
Identities = 36/290 (12%), Positives = 82/290 (28%), Gaps = 21/290 (7%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T +++ W LN + D + I + Y
Sbjct: 65 SITLQVLVDAPGNISCLWVFKHSSLNCQ----PHFDLQNRGVVSMVILKMTET-QAGEYL 119
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
+++ + + + R + + C E+ P+P W
Sbjct: 120 LFIQSEATNYTILFTVSIRN-TLLYTLRR---PYFRKMENQDALVCISESVPEPIVEWVL 175
Query: 126 DGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
+ + + ++ + D C A N G + ++ I L+
Sbjct: 176 CDSQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNELGRECTRLFTIDLNQT--P 230
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI---GNMDLNELETPNINIDG 240
+ P++ + L +RC A W + +++ T I
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKA-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRI 289
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEV 290
+++ + D G Y C + S T++ +G + E+
Sbjct: 290 LFAFVSSVARNDTGYYTCSSSKHPSQ-SALVTIVEKGFINATNSSEDYEI 338
Score = 119 bits (300), Expect = 1e-29
Identities = 22/184 (11%), Positives = 48/184 (26%), Gaps = 10/184 (5%)
Query: 6 DLTWTCEA-FGVPDVTYSWFRNGELLNSET---LPLEDQDRYFIQDNVLTIRYLNPERDP 61
L C+A +W + L + +R I+ + + D
Sbjct: 244 PLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN-DT 302
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C + SA + ++ K + + +A P+ +
Sbjct: 303 GYYTCSSSKHPS---QSALVTIVE-KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRC 358
Query: 122 VWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
W ++ + ++ + G Y A N L + G
Sbjct: 359 TWTFSRKSF-PCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTK 417
Query: 182 YYEQ 185
++
Sbjct: 418 HHHH 421
Score = 99.4 bits (247), Expect = 1e-22
Identities = 18/223 (8%), Positives = 53/223 (23%), Gaps = 20/223 (8%)
Query: 59 RDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK 118
+ Y +++ + E ++T+ +A
Sbjct: 25 GKSSSYPMVSESP-----EDLGCALRPQSSGTVYEAAAVE--VDVSASITLQVLVDAPGN 77
Query: 119 PKFVWKKDGNIIGSGGRRKIFEN--GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+W + + + +++I ++ +G Y + + +
Sbjct: 78 ISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137
Query: 177 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
+ L L C + + V W + + E
Sbjct: 138 RNTL--LYTLRRPYFRKMENQDALVCISESVPEPIV--EWVLCDSQG----ESCKEESPA 189
Query: 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ + + C ++ +G+ T+ I
Sbjct: 190 VVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDLNQT 229
Score = 77.0 bits (189), Expect = 3e-15
Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 26/227 (11%)
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 202
N + S S Y + + + L + YE + + ++ L+
Sbjct: 16 NHKNNDSSVGKSSSYPMVSESPEDLG---CALRPQSSGTVYE--AAAVEVDVSASITLQV 70
Query: 203 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 262
+ +W + +L+ N + I + AGEY ++S
Sbjct: 71 LVDAPGNISC--LWVFKHSSLNCQPHFDLQ----NRGVVSMVILKMTETQAGEYLLFIQS 124
Query: 263 TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS 322
+ TV + + + + P
Sbjct: 125 EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCI---SESVPEPIV---------- 171
Query: 323 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 369
W + + E VL + + A NELG
Sbjct: 172 EWVLCDSQGESCKEESP--AVVKKEEKVLHELFGTDIRCCARNELGR 216
Score = 50.4 bits (120), Expect = 8e-07
Identities = 7/79 (8%), Positives = 21/79 (26%), Gaps = 8/79 (10%)
Query: 5 ADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+ ++ P + +W + + + + ++ + P Y
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRK-------SFPCEQKGLDNGYSISKFCNHKH-QPGEY 393
Query: 65 QCRAKNQLKTRYSSAQLRV 83
A+N L +
Sbjct: 394 IFHAENDDAQFTKMFTLNI 412
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 153 bits (386), Expect = 2e-42
Identities = 47/286 (16%), Positives = 86/286 (30%), Gaps = 17/286 (5%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETL-PLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+ C +++ + ++N E + +++ L I Y
Sbjct: 46 PFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRY 105
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVW 123
C + + PS P E + + ++C A W
Sbjct: 106 LCTVTTKNGDCVQGIVRSHIRKPPSCI--PETYELGTHDKYGIDLYCGILYAKHYNNITW 163
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL------ 177
K+ + G + NL+I +DSG Y C ++ +
Sbjct: 164 YKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVI 223
Query: 178 --HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD--VAYIWTHNGVRIGNMDLNE--L 231
+ L PKI + + C+A + LL V W + I +D +
Sbjct: 224 PSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSI 283
Query: 232 ETPNINIDGGLLEITNASFADAGE-YECVVKSTVGKISTKTTVIVE 276
T + I L N + G Y C + + TTV++E
Sbjct: 284 LTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 93.7 bits (232), Expect = 3e-21
Identities = 57/337 (16%), Positives = 97/337 (28%), Gaps = 43/337 (12%)
Query: 55 LNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPE 114
++ E + + + ++ L + S L PS ++ A G + C P
Sbjct: 2 IDIENEITEFFNKMRDTLPAKDSKW------LNPSCMFGGTMNDM-AALGEPFSAKCPPI 54
Query: 115 AAPKPKFV---------WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG-IYSCTATNV 164
W+K G RR +NG+L I+ + +DS Y CT T
Sbjct: 55 EDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNGDLWIANYTSNDSHRRYLCTVTTK 112
Query: 165 HGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 224
+G + P ++ + L C W N +
Sbjct: 113 NGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQEL- 170
Query: 225 NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 284
++ + G L I N D+G Y+C V +I V
Sbjct: 171 -----IIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL----T 221
Query: 285 VQVVEVHKTSATIQWTDGATNGRPIT-----HYKIIARTNWNSTWFNVSEHVIGKEVDRY 339
V + H+ + T G P + + W N S +IG + Y
Sbjct: 222 VIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVY 281
Query: 340 TGRKEAS--------IENVLVPWSTYEFKVIAGNELG 368
+ + ENV + + N
Sbjct: 282 SILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYF 318
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 151 bits (382), Expect = 7e-42
Identities = 50/312 (16%), Positives = 92/312 (29%), Gaps = 57/312 (18%)
Query: 6 DLTWTCEAFGVPDVT-YSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPA 62
++ C+ + T W+++ + +++ +D + L I + + D
Sbjct: 23 NVLLKCKVANIKKETHIVWYKDER-------EISVDEKHDFKDGICTLLITEFSKK-DAG 74
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGE--------GGNVTIFCNPE 114
+Y+ K+ S +L + + G
Sbjct: 75 IYEVILKDDRGKDKSRLKLVDEA-FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTY 133
Query: 115 AAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESK 171
K W +G+ I R K G L I+ + +D G Y + +
Sbjct: 134 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 193
Query: 172 GRLIVL--------------------HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 211
L + LP +TI + L L C+ + +
Sbjct: 194 VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 253
Query: 212 VAYIWTHNGVRIGNMDLNELETPNINI-----DGGLLEITNASFADAGEYECVVKSTVGK 266
V W N + + N+ I S AD+G+Y VVK+ G
Sbjct: 254 V--SWLKNEKAL-------ASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 304
Query: 267 ISTKTTVIVEGP 278
++ TV V P
Sbjct: 305 ETSDFTVSVFIP 316
Score = 115 bits (289), Expect = 6e-29
Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 25/217 (11%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPK-PKFVWKKDGNIIGSGGRRKIFENGN-L 144
P F + L E NV + C K VW KD I + + L
Sbjct: 7 GPHFVE-YLSWEVT--GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTL 63
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 204
LI+ S+ D+GIY + G D+S+ +L+ K + +L+++ +A
Sbjct: 64 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVD-EAFKELMMEVCKKIALSATDLKIQSTA 122
Query: 205 HTEELLDVAY--------IWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFAD 252
+L W+HNG I + + + L+I + D
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAI-------RYSDRVKTGVTGEQIWLQINEPTPND 175
Query: 253 AGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 289
G+Y + + + Q ++
Sbjct: 176 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 212
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 154 bits (389), Expect = 3e-41
Identities = 45/380 (11%), Positives = 99/380 (26%), Gaps = 48/380 (12%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
C + VP+ W +++ ++ + E +C
Sbjct: 158 ALVCISESVPEPIVEWVLCDSQG----ESCKEESPAVVKKEEKVLH----ELFGTDIRCC 209
Query: 68 AKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKD 126
A+N+L + L P + + G + I C W+ +
Sbjct: 210 ARNELGRECTRLFTIDLNQTPQTT----LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265
Query: 127 GNIIGSG---------GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+ G R + +S V+R+D+G Y+C+++ + ++
Sbjct: 266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIV 322
Query: 178 HGPS-YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
I + + WT +
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRC--TWTFSRKSFPC-------EQKG 373
Query: 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSAT 296
+G + GEY ++ + + T+ + P V +++
Sbjct: 374 LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKP-------QVLAEASASQ 426
Query: 297 IQWTDGATNGRP---ITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353
++G P T K ++ + + +S N+
Sbjct: 427 ASCF---SDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEA 483
Query: 354 WSTYEFKVIAGNELGYGEPS 373
+ K A N LG +
Sbjct: 484 IKGFLVKCCAYNSLGTSCET 503
Score = 153 bits (388), Expect = 5e-41
Identities = 34/286 (11%), Positives = 70/286 (24%), Gaps = 29/286 (10%)
Query: 6 DLTWTCEAFGV-PDVTYSWFRNGELLNSET---LPLEDQDRYFIQDNVLTIRYLNPERDP 61
L C+A V +W + L + +R I+ + + D
Sbjct: 244 PLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN-DT 302
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C + SA + ++ K + + +A P+ +
Sbjct: 303 GYYTCSSSKHPS---QSALVTIVE-KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRC 358
Query: 122 VWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
W ++ + ++ + G Y A N L +
Sbjct: 359 TWTFSRKSFPCE-QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI----- 412
Query: 182 YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--- 238
+ P++ A Q C + L W + N E
Sbjct: 413 ---RRKPQVLAEA-SASQASCFSDGYPLPSW--TWKKCSDKSPNCTEEITEGVWNRKANR 466
Query: 239 -----DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ + +C +++G + GP
Sbjct: 467 KVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512
Score = 143 bits (361), Expect = 2e-37
Identities = 39/323 (12%), Positives = 89/323 (27%), Gaps = 37/323 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T +++ W LN + + Q+R + I + Y
Sbjct: 65 SITLQVLVDAPGNISCLWVFKHSSLNCQPH-FDLQNRG---VVSMVILKMTET-QAGEYL 119
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
+++ + + + R + + C E+ P+P W
Sbjct: 120 LFIQSEATNYTILFTVSIRN-TLLYTLRR---PYFRKMENQDALVCISESVPEPIVEWVL 175
Query: 126 DGNIIGS--GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
+ S + + ++ C A N G + ++ I L+
Sbjct: 176 CDSQGESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDLNQTP-- 230
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI---GNMDLNELETPNINIDG 240
+ P++ + L +RC A W + +++ T I
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKA-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRI 289
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSA----- 295
+++ + D G Y C + S T++ +G + E+ +
Sbjct: 290 LFAFVSSVARNDTGYYTCSSSKHPSQ-SALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348
Query: 296 --------TIQWTDGATNGRPIT 310
WT + +
Sbjct: 349 RFKAYPQIRCTWT---FSRKSFP 368
Score = 99.0 bits (246), Expect = 3e-22
Identities = 29/292 (9%), Positives = 73/292 (25%), Gaps = 42/292 (14%)
Query: 60 DPAMYQC----RAKNQLKTRYSSAQLRV--------LTLKPSFKKRPLESETY-AGEGGN 106
D + +C N SS+ V L+P E+ +
Sbjct: 6 DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65
Query: 107 VTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTATNV 164
+T+ +A +W + + + G ++I ++ +G Y +
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125
Query: 165 HGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG 224
+ + + L L C + + V W +
Sbjct: 126 ATNYTILFTVSIRNTL--LYTLRRPYFRKMENQDALVCISESVPEPIV--EWVLCDSQG- 180
Query: 225 NMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPPGLPG 283
+ E + C ++ +G+ T+ T+ + P
Sbjct: 181 ------ESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTL 234
Query: 284 GVQVVEVHKT------------SATIQWTDGATNGRPITHYKIIARTNWNST 323
++V + + W + + + +++
Sbjct: 235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWE---LENKALEEGNYFEMSTYSTN 283
Score = 95.2 bits (236), Expect = 4e-21
Identities = 25/204 (12%), Positives = 48/204 (23%), Gaps = 33/204 (16%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ ++ P + +W + + + + ++ + P Y
Sbjct: 343 EFCFSVRFKAYPQIRCTWTFSRK-------SFPCEQKGLDNGYSISKFCNHKH-QPGEYI 394
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
A+N L + KP E C + P P + WKK
Sbjct: 395 FHAENDDAQFTKMFTLNIRR-KPQVLA----------EASASQASCFSDGYPLPSWTWKK 443
Query: 126 -------DGNIIGSGGRRKIFEN-------GNLLISPVSRDDSGIYSCTATNVHGMDESK 171
I G + + ++ + C A N G
Sbjct: 444 CSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCET 503
Query: 172 GRLIVLHGPSYYEQLPPKITIAAH 195
L + + K H
Sbjct: 504 ILLNSPGPFPFIQDGGTKHHHHHH 527
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 145 bits (367), Expect = 7e-41
Identities = 48/203 (23%), Positives = 73/203 (35%), Gaps = 29/203 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
++ C A G P + W +NG+ ++ Q RY + + +L I + RD
Sbjct: 23 VASFYCAARGDPPPSIVWRKNGKKVSG------TQSRYTVLEQPGGISILRIEPVRAGRD 76
Query: 61 PAMYQCRAKNQLKTRYS-SAQLRVLTLK------PSFKKRPLESETYAGEGGNVTIFCNP 113
A Y+C A+N + S A L + P + P G V + C
Sbjct: 77 DAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP--GTRVIEVGHTVLMTCKA 134
Query: 114 EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG- 172
P P W K+ + R ++G L I +D G Y C A N G + SK
Sbjct: 135 IGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKAT 194
Query: 173 RLIVLHGPSYYEQLPPKITIAAH 195
L V ++ T H
Sbjct: 195 NLYV--------KVRRVGTKHHH 209
Score = 111 bits (278), Expect = 3e-28
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 24/206 (11%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN--- 143
P ++P GG + +C P P VW+K+G + G+ R + E
Sbjct: 7 PEIIRKP--QNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64
Query: 144 -LLISPV-SRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLP-----PK-ITIAA 194
L I PV + D Y C A N G S L + G P P I
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG 254
+ + C A ++ W N ++ ++ P ++ G L+I N+ D G
Sbjct: 125 GHTVLMTCKAIGNPTPNI--YWIKNQTKV------DMSNPRYSLKDGFLQIENSREEDQG 176
Query: 255 EYECVVKSTVGKI-STKTTVIVEGPP 279
+YECV ++++G S T + V+
Sbjct: 177 KYECVAENSMGTEHSKATNLYVKVRR 202
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 143 bits (363), Expect = 2e-40
Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 16/179 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+C+ G P W+R G+ L +Y + + LT+ E D
Sbjct: 24 AAQLSCQIVGRPLPDIKWYRFGK-------ELIQSRKYKMSSDGRTHTLTVMTEEQE-DE 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
+Y C A N++ +S++L + PL+ + Y G + + P P
Sbjct: 76 GVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAM 135
Query: 122 VWKKDGNIIGSGGRRKIFENGN---LLISPVSR-DDSGIYSCTATNVHGMDESKGRLIV 176
W ++ + I + L++ V R +G Y +NV G ++ + +
Sbjct: 136 TWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194
Score = 124 bits (313), Expect = 2e-33
Identities = 39/205 (19%), Positives = 70/205 (34%), Gaps = 31/205 (15%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
P +K + G + C P P W + G + + K+ +G
Sbjct: 7 APGIRKEM--KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE--QLPPKITIAAHRNLQLR 201
L + ++D G+Y+C ATN G E+ +L++ P ++ L K A L+L
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124
Query: 202 CSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASF-A 251
+ W H + + NI I L + N
Sbjct: 125 VMY-------IGRPVPAMTWFHGQKLL-------QNSENITIENTEHYTHLVMKNVQRKT 170
Query: 252 DAGEYECVVKSTVGKISTKTTVIVE 276
AG+Y+ + + G + V ++
Sbjct: 171 HAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 55.5 bits (134), Expect = 4e-09
Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 33/132 (25%)
Query: 214 YIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKIST 269
W G + +++ + DG L + D G Y C+ + VG++ T
Sbjct: 39 IKWYRFGKEL-------IQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91
Query: 270 KTTVIVEGPPGLPGGV-----QVVEVHKT-----------SATIQWTDGATNGRPIT--- 310
+ ++++ P G V T + W + +
Sbjct: 92 SSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH---GQKLLQNSE 148
Query: 311 HYKIIARTNWNS 322
+ I ++
Sbjct: 149 NITIENTEHYTH 160
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 145 bits (368), Expect = 9e-40
Identities = 56/315 (17%), Positives = 97/315 (30%), Gaps = 51/315 (16%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+ +C G P W ++G L +R + L + + E D Y
Sbjct: 25 AVELSCPPPGGGPMGPTVWVKDGT-------GLVPSERVLVGPQRLQVLNASHE-DSGAY 76
Query: 65 QCRAKNQLKTRYSSAQLRVLTL--------------------KPSFKKRPLESETY--AG 102
CR + + + P + + +
Sbjct: 77 SCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP 136
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLISPVSRDDSGIYS 158
V C P P W K+G GG + + +L++ V D G Y+
Sbjct: 137 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 196
Query: 159 CTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 214
C N G L VL H P LP T +++ C +++ +
Sbjct: 197 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI-- 254
Query: 215 IWTH----NGVRIGN------MDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 264
W NG ++G L + + +L + N +F DAGEY C+ +++
Sbjct: 255 QWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314
Query: 265 GKISTKTTVIVEGPP 279
G ++V
Sbjct: 315 GFSHHSAWLVVLPAE 329
Score = 109 bits (273), Expect = 1e-26
Identities = 50/272 (18%), Positives = 78/272 (28%), Gaps = 60/272 (22%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
P + E G G V + C P P VW KDG + R + L +
Sbjct: 8 PGPEPGQQEQLV-FGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG-PQRLQV 65
Query: 147 SPVSRDDSGIYSCTATNVHGM---------------------DESKGRLIVLHGPSYYEQ 185
S +DSG YSC + DE++ + P +
Sbjct: 66 LNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRP 125
Query: 186 L---PPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
+ + A ++ RC A + W NG + + +
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPS-------ISWLKNGREFRGE--HRIGGIKLR 176
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSA-- 295
L + + +D G Y CVV++ G I T+ V +Q +A
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236
Query: 296 ----------------TIQWT-DGATNGRPIT 310
IQW NG +
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG 268
Score = 50.8 bits (121), Expect = 5e-07
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSE----------TLPLEDQDRYFIQDNVLTIRYL 55
D+ + C+ + W ++ E+ S+ L + + VL++ +
Sbjct: 239 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298
Query: 56 NPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKK 92
E D Y C A N + + SA L VL + +
Sbjct: 299 TFE-DAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 140 bits (355), Expect = 2e-39
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 13/178 (7%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN--VLTIRYLNPERDPAM 63
T+ G P SWFR+G+++++ TLP + D LTI + +
Sbjct: 22 TATFEAHISGFPVPEVSWFRDGQVISTSTLP---GVQISFSDGRAKLTIPAVTKA-NSGR 77
Query: 64 YQCRAKNQLKTRYSSAQLRVL--TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y +A N S+A+L V T P+F +R +G V + P P
Sbjct: 78 YSLKATNGSGQATSTAELLVKAETAPPNFVQRL--QSMTVRQGSQVRLQVRVTGIPTPVV 135
Query: 122 VWKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ +DG I S +I + G+ LLI+ +DSG YS ATN G S L+V
Sbjct: 136 KFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
Score = 119 bits (300), Expect = 1e-31
Identities = 45/205 (21%), Positives = 76/205 (37%), Gaps = 32/205 (15%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI---FENG-- 142
P+F + EG T + P P+ W +DG +I + + F +G
Sbjct: 6 PTFTQPL--QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-------TIAAH 195
L I V++ +SG YS ATN G S L+V + PP T+
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA-----PPNFVQRLQSMTVRQG 118
Query: 196 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFA 251
++L+ V + +G I + + I D L I A
Sbjct: 119 SQVRLQVRVTGIPTPVV--KFYRDGAEI-------QSSLDFQISQEGDLYSLLIAEAYPE 169
Query: 252 DAGEYECVVKSTVGKISTKTTVIVE 276
D+G Y ++VG+ ++ ++V+
Sbjct: 170 DSGTYSVNATNSVGRATSTAELLVQ 194
Score = 55.1 bits (133), Expect = 4e-09
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-- 242
Q + + + +V W +G I + L I+ G
Sbjct: 10 QPLQSVVVLEGSTATFEAHISGFPVPEV--SWFRDGQVI---STSTLPGVQISFSDGRAK 64
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
L I + A++G Y + G+ ++ ++V+ P
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 137 bits (348), Expect = 2e-38
Identities = 39/178 (21%), Positives = 67/178 (37%), Gaps = 16/178 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+TC A G P+ + GE + R +Q LTI N E D
Sbjct: 19 SKFFTCTAIGEPESIDWYNPQGE-------KIISTQRVVVQKEGVRSRLTIYNANIE-DA 70
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
+Y+C+A + + + + K +F++ S +G + + C ++P P
Sbjct: 71 GIYRCQATDAKGQTQEATVVLEIYQKLTFREVV--SPQEFKQGEDAEVVCRVSSSPAPAV 128
Query: 122 VWKKDGNII--GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
W + S R + N NL I +++ D GIY C + +IV+
Sbjct: 129 SWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 122 bits (307), Expect = 1e-32
Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 13/193 (6%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NL 144
S+ G + C P+ + G I S R + + G L
Sbjct: 3 LQVTISL--SKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 60
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 204
I + +D+GIY C AT+ G + ++ ++ + ++ + ++ C
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV 120
Query: 205 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLLEITNASFADAGEYECVVKST 263
+ V W ++ + + + L+I N + +D G Y C +
Sbjct: 121 SSSPAPAV--SWLYHNEEV-----TTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVE 173
Query: 264 VGKISTKTTVIVE 276
+IV
Sbjct: 174 ARGEIDFRDIIVI 186
Score = 58.3 bits (141), Expect = 4e-10
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMY 64
D C P SW + E + +R+ + +N L I +N D +Y
Sbjct: 113 DAEVVCRVSSSPAPAVSWLYHNE-----EVTTISDNRFAMLANNNLQILNINKS-DEGIY 166
Query: 65 QCRAKNQLKTRYSSAQLRVLT 85
+C + + + + V+
Sbjct: 167 RCEGRVEARGEIDFRDIIVIV 187
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 145 bits (366), Expect = 5e-38
Identities = 54/297 (18%), Positives = 87/297 (29%), Gaps = 35/297 (11%)
Query: 6 DLTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQ--DRYFIQDNVLTIRYLNPERDPA 62
+ T TC V V +W R + D + + LTI D
Sbjct: 228 EFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN-DSG 286
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETY-AGEGGNVTIFCNPEAAPKPKF 121
++ C A N + + L V+ K P+ + T +G NV + EA PKP+
Sbjct: 287 VFMCYANNTFGSANVTTTLEVVD-KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEH 345
Query: 122 V-WKKDGNIIGSG--------GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG 172
W I L ++ + + G Y+ +N
Sbjct: 346 QQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAF 405
Query: 173 RLIVLHGPSYYEQLPPKI-TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 231
+ V P+I T N L+C A + W + L
Sbjct: 406 NVYV--------NTKPEILTYDRLVNGMLQCVAAGFPEPTID--WYFCPGTEQRCSASVL 455
Query: 232 ETPNINIDGGL---------LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
++ I +++F G EC + VGK S +G
Sbjct: 456 PVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNN 512
Score = 139 bits (351), Expect = 4e-36
Identities = 48/298 (16%), Positives = 89/298 (29%), Gaps = 39/298 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMY 64
D C P+VT + + PL R+ + I+ +
Sbjct: 131 DTLVRCPL-TDPEVTNYSLKGCQGK-----PLPKDLRFIPDPKAGIMIKSVKRAYHRLCL 184
Query: 65 QCRAKNQLKTRYSS-AQLRVL---TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP- 119
C + K+ S L+V P + EG T+ C +
Sbjct: 185 HCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSK--ASYLLREGEEFTVTCTIKDVSSSV 242
Query: 120 KFVWKKDGNIIGSGGRRKIFENGN--------LLISPVSRDDSGIYSCTATNVHGMDESK 171
WK++ + + + +G+ L IS +DSG++ C A N G
Sbjct: 243 YSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT 302
Query: 172 GRLIVLHGP--SYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY------IWTHNGVRI 223
L V+ + + + + + N+ L A+ W +
Sbjct: 303 TTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYE-------AFPKPEHQQWIYMNRTF 355
Query: 224 GNM--DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ D + E + L +T + G Y +V ++ + V V P
Sbjct: 356 TDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP 413
Score = 117 bits (293), Expect = 2e-28
Identities = 39/283 (13%), Positives = 69/283 (24%), Gaps = 33/283 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
++ C G W +E + N + Y
Sbjct: 53 EIRLLCTDPGFV----KWTFEILDETNEN-----------KQNEWITEKAEAT-NTGKYT 96
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C K+ +S + V F + Y E + + C P+ K
Sbjct: 97 CTNKH---GLSNSIYVFVRDPAKLFLV---DRSLYGKEDNDTLVRCPL-TDPEVTNYSLK 149
Query: 126 --DGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCTATNVHGMDESKG-RLIVL---H 178
G + R ++I V R C+ S+ L V
Sbjct: 150 GCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFK 209
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI--GNMDLNELETPNI 236
+ + C+ + V W + +
Sbjct: 210 AVPVVSVSKASYLLREGEEFTVTCTI-KDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFN 268
Query: 237 NIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L I++A D+G + C +T G + TT+ V
Sbjct: 269 YERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG 311
Score = 105 bits (262), Expect = 2e-24
Identities = 27/210 (12%), Positives = 45/210 (21%), Gaps = 36/210 (17%)
Query: 6 DLTWTCEAFGVPD-VTYSWFRNGELL--NSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
++ E P W E P + + + L + L +
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGT-EGG 388
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 122
Y N + + V T KP N + C P+P
Sbjct: 389 TYTFLVSNSDVNAAIAFNVYVNT-KPEILTYD--------RLVNGMLQCVAAGFPEPTID 439
Query: 123 WKKDGNIIGSGGRRKIFENGN---------------LLISPVSRDDSGIYSCTATNVHGM 167
W + + I + +G C A N G
Sbjct: 440 WYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGK 499
Query: 168 DESKGRLIVLHGPSYYEQLPPKITIAAHRN 197
+ + K I H +
Sbjct: 500 TSAYFNFAF--------KGNNKEQIHPHHH 521
Score = 71.6 bits (175), Expect = 2e-13
Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 23/220 (10%)
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
+ Q + S + PS P +S+ G + + C K W
Sbjct: 14 LLLLLRVQTGSSQPSVSPGEPS-PPSI--HPGKSDLIVRVGDEIRLLCTDPGFVK----W 66
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
+ + + + ++G Y+CT + S + + P+
Sbjct: 67 TFEILDETNENK-----QNEWITEKAEATNTGKYTCTNKH----GLSNSIYVFVRDPAKL 117
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243
+ + + +RC E V L + + G++
Sbjct: 118 FLVDRSLYGKEDNDTLVRCPLTDPE---VTNYSLKGCQGK---PLPKDLRFIPDPKAGIM 171
Query: 244 EITNASFADAGEYECVVKSTVG-KISTKTTVIVEGPPGLP 282
+ C V +S K + V
Sbjct: 172 IKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211
Score = 65.1 bits (158), Expect = 2e-11
Identities = 18/152 (11%), Positives = 36/152 (23%), Gaps = 26/152 (17%)
Query: 152 DDSGIYSCT----ATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTE 207
+ + C G + PS + + + ++L C+
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPG-KSDLIVRVGDEIRLLCTDPGF 63
Query: 208 ELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI 267
WT + N + A + G+Y C K +
Sbjct: 64 ------VKWTFEILDETNEN-----------KQNEWITEKAEATNTGKYTCTNKHGLS-- 104
Query: 268 STKTTVIVEGPPGLPGGVQVVEV-HKTSATIQ 298
V V P L + + ++
Sbjct: 105 -NSIYVFVRDPAKLFLVDRSLYGKEDNDTLVR 135
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 137 bits (347), Expect = 1e-37
Identities = 45/219 (20%), Positives = 70/219 (31%), Gaps = 29/219 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ + C A G P + SW +NG E + Q L + + P D Y
Sbjct: 32 TVRFRCPAAGNPTPSISWLKNGREFRGE--HRIGGIKLRHQQWSLVMESVVPS-DRGNYT 88
Query: 66 CRAKNQLKTRYSSAQLRVL----TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
C +N+ + + L VL P + A G +V C + +P
Sbjct: 89 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLP--ANQTAVLGSDVEFHCKVYSDAQPHI 146
Query: 122 VWKKDGNIIGS---------------GGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
W K + GS + + L ++ VS D G Y C ATN G
Sbjct: 147 QWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIG 206
Query: 167 MDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205
+ E L V + + + A + H
Sbjct: 207 VAEKAFWLSVHGPRA-----AEEELVEADEAGSVHHHHH 240
Score = 128 bits (323), Expect = 2e-34
Identities = 44/239 (18%), Positives = 74/239 (30%), Gaps = 23/239 (9%)
Query: 77 SSAQLRVLTLKPSFKKRPL--ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGG 134
+ V T P + + + V C P P W K+G
Sbjct: 1 ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60
Query: 135 RRKIF----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQL 186
R + +L++ V D G Y+C N G L VL H P L
Sbjct: 61 RIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGL 120
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN---------MDLNELETPNIN 237
P T +++ C +++ + W + G+ + + +
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHI--QWLKHVEVNGSKVGPDGTPYVTVLKSWISESV 178
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSAT 296
L + N S D GEY C + +G + V GP ++VE + +
Sbjct: 179 EADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEE--ELVEADEAGSV 235
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 137 bits (346), Expect = 5e-37
Identities = 50/284 (17%), Positives = 78/284 (27%), Gaps = 31/284 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T C + G + W S L+ + + LT R + + Y+
Sbjct: 21 TVTLRCVSNG----SVEWDGPI----SPYWTLDPESPG----STLTTRNATFK-NTGTYR 67
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWK 124
C ++ L V S+ E EG + C K
Sbjct: 68 CTELEDPMAGSTTIHLYVKDPAHSWNLLA--QEVTVVEGQEAVLPCLITDPALKDSVSLM 125
Query: 125 KDG-NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLHGPSY 182
++G + +I DS Y C + L V
Sbjct: 126 REGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPE 185
Query: 183 YEQLPPKITIAAHR-------NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235
PP+I + + Q+ CSA E+ + G + LN N
Sbjct: 186 ----PPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFN--VILKRGDTKLEIPLNSDFQDN 239
Query: 236 INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L + F DAG Y CV + VG + V
Sbjct: 240 YYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
Score = 98.5 bits (245), Expect = 4e-23
Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 13/197 (6%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
P+ P E G VT+ C + + W + + L
Sbjct: 2 DPAPVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPISPYWTLDPES--PGSTLTT 55
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 206
+ ++G Y CT + L V + L ++T+ + L C T
Sbjct: 56 RNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLI-T 114
Query: 207 EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVG 265
+ L + G R +P I A D+ Y C +
Sbjct: 115 DPALKDSVSLMREGGRQVLRKTVYFFSPW-----RGFIIRKAKVLDSNTYVCKTMVNGRE 169
Query: 266 KISTKTTVIVEGPPGLP 282
ST + V P
Sbjct: 170 STSTGIWLKVNRVHPEP 186
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 144 bits (364), Expect = 5e-37
Identities = 57/313 (18%), Positives = 95/313 (30%), Gaps = 43/313 (13%)
Query: 7 LTWTCEAFGVPD--VTYSWFRNGELLNSETLPLEDQ-----DRYFIQDNVLTIRYLNPER 59
L C A + + ++W + L D + LTI +
Sbjct: 242 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS- 300
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 119
D +Y C A + L T+ +S +RV +ES A G V I P P
Sbjct: 301 DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP 360
Query: 120 KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVL 177
+ W K+G + S I L I VS D+G Y+ TN ++ L+V
Sbjct: 361 EIKWYKNGIPLES--NHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY 418
Query: 178 HGPSYYEQ--LPPKITIAAHRNLQLRCSAH--------------------------TEEL 209
P E+ + P + L C+ + +
Sbjct: 419 VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTN 478
Query: 210 LDVAYIWTHNGVRIGNMDLNELETPNINIDGG---LLEITNASFADAGEYECVVKSTVGK 266
W G + + I+G + + + + Y+C + VG+
Sbjct: 479 PYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR 538
Query: 267 ISTKTTVIVEGPP 279
+ V P
Sbjct: 539 GERVISFHVTRGP 551
Score = 144 bits (363), Expect = 6e-37
Identities = 57/329 (17%), Positives = 95/329 (28%), Gaps = 36/329 (10%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69
TC G D+ + W N E D F + LTI + D Y+C +
Sbjct: 52 TCR--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCK--TLTIPKVIGN-DTGAYKCFYR 106
Query: 70 NQLKTRYSSAQLRVLTLKPSFKKRPLESETY--AGEGGNVTIFCNPEAAPKP--KFVWKK 125
++ Y + V I C +
Sbjct: 107 ETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP 166
Query: 126 DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ 185
+ + G R I +G+ C A +S ++V+ G Y+
Sbjct: 167 EKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDV 226
Query: 186 L---PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV-----RIGNMDLNELETPNIN 237
+ I ++ L L C+A TE + + + W + ++ N DL +
Sbjct: 227 VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 286
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP-----GGVQVVEVHK 292
L I + +D G Y C S + T V V P + + V +
Sbjct: 287 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGE 346
Query: 293 T-----------SATIQWTDGATNGRPIT 310
I+W NG P+
Sbjct: 347 RVRIPAKYLGYPPPEIKWY---KNGIPLE 372
Score = 141 bits (356), Expect = 5e-36
Identities = 47/333 (14%), Positives = 90/333 (27%), Gaps = 69/333 (20%)
Query: 7 LTWTCEAFGVPD-VTYSWFRNGELLNSETLP--------------------------LED 39
T TC + +P W+ E + +
Sbjct: 441 QTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVN 500
Query: 40 QDRYFIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPL 95
++++ + + V T+ A+Y+C A N++ V T P +P
Sbjct: 501 KNQFALIEGKNKTVSTLVIQAAN-VSALYKCEAVNKVGRGERVISFHV-TRGPEITLQP- 557
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG------------------GRRK 137
+ E +V+++C + + W K G
Sbjct: 558 --DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNAT 615
Query: 138 IFENGN-----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL---HGPSYYEQLPPK 189
+F N + + S D G Y C A + +
Sbjct: 616 MFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLEN 675
Query: 190 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNAS 249
T + ++++ C+A + +W + + E + L I
Sbjct: 676 QTTSIGESIEVSCTASGNPPPQI--MWFKDNETL-----VEDSGIVLKDGNRNLTIRRVR 728
Query: 250 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
D G Y C S +G + I+EG
Sbjct: 729 KEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 761
Score = 137 bits (346), Expect = 1e-34
Identities = 44/294 (14%), Positives = 82/294 (27%), Gaps = 37/294 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMY 64
+ C R E + D +R TI M
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKR-----FVPDGNRISWDSKKGFTIPSYMIS-YAGMV 198
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESE-TYAGEGGNVTIFCNPEAAPKPKFVW 123
C AK ++ S + V+ + S G + + C +
Sbjct: 199 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 258
Query: 124 KKDGN-------------IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 170
+ + G L I V+R D G+Y+C A++ ++
Sbjct: 259 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 318
Query: 171 KGRLIVLHGPS--YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 228
+ V P + + + +++ ++ W NG+ +
Sbjct: 319 STFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEI--KWYKNGIPL----- 371
Query: 229 NELETPNINI-DGGLLEITNASFADAGEYECVVKSTVGKISTKTT--VIVEGPP 279
N I G +L I S D G Y ++ + + K ++V PP
Sbjct: 372 ----ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPP 421
Score = 115 bits (288), Expect = 3e-27
Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 25/203 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELL-----NSETLPLEDQDRYFIQDN------------ 48
++ C A +W++ G P+ + N
Sbjct: 566 SVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDIL 625
Query: 49 VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL---KPSFKKRPLESETYAGEGG 105
++ ++ + + D Y C A+++ + ++ L P+ G
Sbjct: 626 IMELKNASLQ-DQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNL--ENQTTSIGE 682
Query: 106 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGNLLISPVSRDDSGIYSCTATNV 164
++ + C P P+ +W KD + + N NL I V ++D G+Y+C A +V
Sbjct: 683 SIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSV 742
Query: 165 HGMDESKGRLIVLHGPSYYEQLP 187
G + + I+ G L
Sbjct: 743 LGCAKVEAFFII-EGAQEKTNLE 764
Score = 110 bits (276), Expect = 8e-26
Identities = 29/232 (12%), Positives = 56/232 (24%), Gaps = 24/232 (10%)
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 119
A++ C S L + P + + I C
Sbjct: 8 AVALWLCVETRAASVGLPSVSLDL----PRLSIQK--DILTIKANTTLQITC--RGQRDL 59
Query: 120 KFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
++W + + +G L I V +D+G Y C +
Sbjct: 60 DWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119
Query: 176 VLHGPSY----YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 231
P + IT ++ + + C L +
Sbjct: 120 DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFV-------P 172
Query: 232 ETPNINIDG-GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
+ I+ D I + + AG C K + ++V +
Sbjct: 173 DGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 224
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 133 bits (337), Expect = 8e-37
Identities = 41/194 (21%), Positives = 70/194 (36%), Gaps = 9/194 (4%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-NGNLLI 146
P+ A G +T C +P+P W ++G +I + + N L +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 206
+ D G Y C ATN G DE + L V P + T + + L C A
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQ--LKNETTYENGQVTLVCDAEG 120
Query: 207 EELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLLEITNASFADAGEYECVVKS 262
E + ++ W + ++ I + L I + +D+G Y+C S
Sbjct: 121 EPIPEI--TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 178
Query: 263 TVGKISTKTTVIVE 276
+G + +E
Sbjct: 179 RIGGHQKSMYLDIE 192
Score = 128 bits (322), Expect = 9e-35
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 24/183 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--DNVLTIRYLNPERDPAM 63
++T++C A G P+ SWFRNG+ +E+ ++Y ++ + LT+R + D
Sbjct: 21 EMTFSCRASGSPEPAISWFRNGK-------LIEENEKYILKGSNTELTVRNIINS-DGGP 72
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
Y CRA N+ A L+V +P + E G VT+ C+ E P P+ W
Sbjct: 73 YVCRATNKAGEDEKQAFLQVFV-QPHIIQLK---NETTYENGQVTLVCDAEGEPIPEITW 128
Query: 124 KKDGNII-------GSGGRRKIFE---NGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173
K+ + GR ++ + +L I V DSG Y C A + G +
Sbjct: 129 KRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY 188
Query: 174 LIV 176
L +
Sbjct: 189 LDI 191
Score = 56.0 bits (135), Expect = 2e-09
Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 17/102 (16%)
Query: 183 YEQLPPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
Q T + C A W NG I E E +
Sbjct: 7 MPQKSFNATAERGEEMTFSCRASGSPEPA-------ISWFRNGKLI-----EENEKYILK 54
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L + N +D G Y C + G+ + + V P
Sbjct: 55 GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQP 96
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 134 bits (339), Expect = 9e-37
Identities = 39/194 (20%), Positives = 59/194 (30%), Gaps = 23/194 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ + C A G P T W +NG+ E + Q L + + P D Y
Sbjct: 36 TVKFRCPAGGNPMPTMRWLKNGKEFKQE--HRIGGYKVRNQHWSLIMESVVPS-DKGNYT 92
Query: 66 CRAKNQLKTRYSSAQLRVL----TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
C +N+ + + L V+ P + GG+V C + +P
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLP--ANASTVVGGDVEFVCKVYSDAQPHI 150
Query: 122 VWKKDGNIIGSG--------------GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGM 167
W K GS L + V+ D+G Y C +N G
Sbjct: 151 QWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210
Query: 168 DESKGRLIVLHGPS 181
L VL
Sbjct: 211 ANQSAWLTVLPKQQ 224
Score = 120 bits (303), Expect = 1e-31
Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 20/217 (9%)
Query: 88 PSFKK--RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIF----EN 141
P + + + V C P P W K+G R + ++
Sbjct: 16 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 75
Query: 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL----HGPSYYEQLPPKITIAAHRN 197
+L++ V D G Y+C N +G L V+ H P LP + +
Sbjct: 76 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGD 135
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNE-------LETPNINI-DGGLLEITNAS 249
++ C +++ + W + + G+ + L+ IN + +L + N +
Sbjct: 136 VEFVCKVYSDAQPHI--QWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVT 193
Query: 250 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ 286
ADAGEY C V + +G+ + + V PG +
Sbjct: 194 EADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 135 bits (340), Expect = 4e-36
Identities = 45/286 (15%), Positives = 76/286 (26%), Gaps = 33/286 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-QDNVLTIRYLNPERDPAMY 64
+T C G + W P Y ++L+ + + Y
Sbjct: 21 TVTLRCVGNG----SVEWDGP---------PSPHWTLYSDGSSSILSTNNATFQ-NTGTY 66
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVW 123
+C ++ L V + E E + + C +
Sbjct: 67 RCTEPGDPLGGSAAIHLYVKDPARPWNVLA--QEVVVFEDQDALLPCLLTDPVLEAGVSL 124
Query: 124 KK-DGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN-VHGMDESKGRLIVLHGPS 181
+ G + I S Y C+A + RL V
Sbjct: 125 VRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP 184
Query: 182 YYEQLPPKITIAAHR-------NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETP 234
PP +T+ Q+ CSA + ++ + HN ++ ++
Sbjct: 185 G----PPALTLVPAELVRIRGEAAQIVCSASSVDV-NFDVFLQHNNTKLAIPQQSDFHNN 239
Query: 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
L + F AG Y CV + GK ST V G
Sbjct: 240 RYQKVL-TLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAG 284
Score = 85.8 bits (212), Expect = 8e-19
Identities = 33/197 (16%), Positives = 59/197 (29%), Gaps = 15/197 (7%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
P + P E G VT+ C + + W DG + L
Sbjct: 4 IPVIE--PSVPELVVKPGATVTLRCVGNGSVE----W--DGPPSPHWTLYSDGSSSILST 55
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHT 206
+ + ++G Y CT + L V + L ++ + ++ L C T
Sbjct: 56 NNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLL-T 114
Query: 207 EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG- 265
+ +L+ R N +P I A F + +Y+C
Sbjct: 115 DPVLEAGVSLVRVRGRPLMRHTNYSFSPW-----HGFTIHRAKFIQSQDYQCSALMGGRK 169
Query: 266 KISTKTTVIVEGPPGLP 282
+S + V+ P
Sbjct: 170 VMSISIRLKVQKVIPGP 186
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 134 bits (338), Expect = 9e-36
Identities = 47/296 (15%), Positives = 81/296 (27%), Gaps = 33/296 (11%)
Query: 7 LTWTCEAFGVPD-VTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
C T +W+++ + E R L E D Y
Sbjct: 23 DVRPCPLNPNEHKGTITWYKDDSKTP---VSTEQASRIHQHKEKLWFVPAKVE-DSGHYY 78
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKK-RPLESETYAGEGGNVTIFCN------PEAAPK 118
C +N + + +P+ + G+ + C E
Sbjct: 79 CVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL 138
Query: 119 PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVL 177
PK W KD + L++ V+ G Y+C A+ + + R+I
Sbjct: 139 PKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEF 198
Query: 178 HGPSYYEQLPPKITIAAHR--------NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
+ P I A+ +QL C+ + W NG I D
Sbjct: 199 ITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA--YWKWNGSVIDEDDPV 256
Query: 230 ELE---------TPNINIDGGLLEITNASFAD-AGEYECVVKSTVGKISTKTTVIV 275
E + +L I+ + C K+T G + +I
Sbjct: 257 LGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 100 bits (249), Expect = 2e-23
Identities = 47/316 (14%), Positives = 77/316 (24%), Gaps = 50/316 (15%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAP-KPKFVWKKDGN---IIGSGGRRKIFENGN 143
K+R + + C K W KD + + R
Sbjct: 4 DKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS---YYEQLPPKITIAAHRNLQL 200
L P +DSG Y C N K + Y Q K + + L
Sbjct: 64 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 123
Query: 201 RCSAHTEELLD---VAYI-WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
C + + + W + + L+ + + L + N + G Y
Sbjct: 124 VCPYMEFFKNENNELPKLQWYKDCKPL------LLDNIHFSGVKDRLIVMNVAEKHRGNY 177
Query: 257 ECVVKSTVGKISTKTTVIVEG----------PPGLPGGVQVVEVHKTSA----------- 295
C T T ++E P + + +EV S
Sbjct: 178 TCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL 237
Query: 296 --TIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353
W NG I + + R T +I +
Sbjct: 238 SDIAYWKW---NGSVI-------DEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR 287
Query: 354 WSTYEFKVIAGNELGY 369
+ + F A N G
Sbjct: 288 FYKHPFTCFAKNTHGI 303
Score = 49.3 bits (117), Expect = 1e-06
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 9/87 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSE---------TLPLEDQDRYFIQDNVLTIRYLN 56
+ C G W NG +++ + ++ R VL I +
Sbjct: 226 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 285
Query: 57 PERDPAMYQCRAKNQLKTRYSSAQLRV 83
+ C AKN + QL
Sbjct: 286 SRFYKHPFTCFAKNTHGIDAAYIQLIY 312
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 130 bits (328), Expect = 2e-35
Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 33/212 (15%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
PG P ++V EV KTS T+ W G I +Y + R + + V+ +
Sbjct: 5 TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNC----- 59
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 396
+ ++ L +Y F+V+A NE G G P+ + +++P P +I
Sbjct: 60 ----HKTSWKVDQ-LQEGCSYYFRVLAENEYGIGLPAETAESV-KASERP-LPPGKITLM 112
Query: 397 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 456
+S+SWE P + + Y + + K ++ + +
Sbjct: 113 DVTRNSVSLSWEK-PEHDGGSRILGYIVEMQTKGSDKWAT------------CATVKVTE 159
Query: 457 Y-------YTEYEVKVQAINDVGPGPESEVVT 481
EY +V A N+ G ++
Sbjct: 160 ATITGLIQGEEYSFRVSAQNEKGISDPRQLSV 191
Score = 71.2 bits (175), Expect = 2e-14
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 271 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSE 329
+V P PG + +++V + S ++ W G I Y + +T + W +
Sbjct: 95 ESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT 154
Query: 330 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+V T I L+ Y F+V A NE G +P S
Sbjct: 155 V----KVTEAT------ITG-LIQGEEYSFRVSAQNEKGISDPRQLS 190
Score = 42.7 bits (101), Expect = 9e-05
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
++++W+P P + Y + R+ + T+ + V
Sbjct: 22 VTLTWDP-PLLDGGSKIKNYIVEKRESTRKAYS--TVATNCHKTSWKVDQLQE----GCS 74
Query: 461 YEVKVQAINDVGPGPESEVVTI 482
Y +V A N+ G G +E
Sbjct: 75 YYFRVLAENEYGIGLPAETAES 96
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 131 bits (331), Expect = 3e-35
Identities = 42/277 (15%), Positives = 79/277 (28%), Gaps = 39/277 (14%)
Query: 7 LTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T CE +P + WF NG + T I + D Y+
Sbjct: 19 VTLHCEVLHLPGSSSTQWFLNGTATQTST-------------PSYRITSASVN-DSGEYR 64
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWK 124
C+ S +++ + + S EG + + C+ ++
Sbjct: 65 CQRGL----SGRSDPIQLEIHRGWLLLQV--SSRVFTEGEPLALRCHAWKDKLVYNVLYY 118
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY-Y 183
++G N NL I + +G Y C+ H + + V
Sbjct: 119 RNGKAFKFFH-----WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPV 173
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243
+ + L C + G+++ +T
Sbjct: 174 LNASVTSPLLEGNLVTLSCET--------KLLLQRPGLQLYFSFYMGSKTLRGRNTSSEY 225
Query: 244 EITNASFADAGEYECVVKSTVGKI---STKTTVIVEG 277
+I A D+G Y C + G + S + + V G
Sbjct: 226 QILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 91.5 bits (227), Expect = 6e-21
Identities = 36/197 (18%), Positives = 56/197 (28%), Gaps = 26/197 (13%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLL 145
K +P + E VT+ C P W +G + +
Sbjct: 1 KAVITLQPPWVSVFQEE--TVTLHCEVLHLPGSSSTQWFLNGTATQT-------STPSYR 51
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205
I+ S +DSG Y C D +L + G + L LRC A
Sbjct: 52 ITSASVNDSGEYRCQRGLSGRSDPI--QLEIHRGWLLLQ--VSSRVFTEGEPLALRCHAW 107
Query: 206 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265
++L+ ++ NG L I + + G Y C
Sbjct: 108 KDKLV-YNVLYYRNGKAFKFFH-----------WNSNLTILKTNISHNGTYHCSGMGKHR 155
Query: 266 KISTKTTVIVEGPPGLP 282
S +V V+ P
Sbjct: 156 YTSAGISVTVKELFPAP 172
Score = 90.0 bits (223), Expect = 2e-20
Identities = 31/174 (17%), Positives = 53/174 (30%), Gaps = 28/174 (16%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
L C A+ ++RNG+ ++F ++ LTI N Y
Sbjct: 99 PLALRCHAWKDKLVYNVLYYRNGKAF-----------KFFHWNSNLTILKTNIS-HNGTY 146
Query: 65 QCRAKNQLKTRYSSAQLRVLTL--KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--- 119
C + + + + V L P + EG VT+ C + +
Sbjct: 147 HCSGMGKHRYTSAGISVTVKELFPAPVLNASV---TSPLLEGNLVTLSCETKLLLQRPGL 203
Query: 120 --KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
F + + + I R+DSG+Y C A G +
Sbjct: 204 QLYFSFYMGSKTLRGRNT-----SSEYQILTARREDSGLYWCEAATEDGNVLKR 252
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 132 bits (333), Expect = 1e-34
Identities = 54/307 (17%), Positives = 94/307 (30%), Gaps = 35/307 (11%)
Query: 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSETL--PLEDQDRYFIQDNVLTIRYLNPERDP 61
+ L + +T W+ + + E ++R + +VL R D
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN-DT 91
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSF-KKRPLESETYAGEGGNVTIFC-----NPEA 115
Y C +N + L V+ F L E G I C +
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 116 APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR-- 173
+ KP W I I E NL ++G Y+C T
Sbjct: 152 SVKPTITWYMGCYKI-QNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRT 210
Query: 174 --LIVLHGPSYYEQLPPKI---------TIAAHRNLQLRCSAHTEELLD--VAYIWTHNG 220
+ V+ P +PP I L + C+ + L+D WT +G
Sbjct: 211 LTVKVVGSP--KNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDG 268
Query: 221 VRIGNMDLNELETPNINID-------GGLLEITNASFAD-AGEYECVVKSTVGKISTKTT 272
+ ++ ++ +I+ +L I + D Y C +S G+++
Sbjct: 269 KKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAK 328
Query: 273 VIVEGPP 279
V + P
Sbjct: 329 VKQKVPA 335
Score = 88.0 bits (217), Expect = 3e-19
Identities = 47/310 (15%), Positives = 82/310 (26%), Gaps = 62/310 (20%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGN--------IIGSGGRRKIFENGNLLISPVSRDDS 154
+ + + +W R E L P +D+
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91
Query: 155 GIYSCTATNVHGMDESKGRLIVLHGPSYY---EQLPPKITIAAHRNLQLRC---SAHTEE 208
G Y+C N + L V+ S + +LP + ++ C +
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 209 LLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV---- 264
+ W +I N N+ +G L A ++ G Y CVV
Sbjct: 152 SVKPTITWYMGCYKIQN-------FNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRT 204
Query: 265 GKISTKTTVIVEGPP--------GLPGGVQVVEVH-----------------KTSATIQW 299
++ TV V G P P V E + + W
Sbjct: 205 FHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWW 264
Query: 300 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359
T +G+ I ++E + + T + SI+ V +
Sbjct: 265 TI---DGKKPDDITIDVT---------INESISHSRTEDETRTQILSIKKVTSEDLKRSY 312
Query: 360 KVIAGNELGY 369
A + G
Sbjct: 313 VCHARSAKGE 322
Score = 46.0 bits (108), Expect = 2e-05
Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 11/98 (11%)
Query: 6 DLTWTCEAF----GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-------VLTIRY 54
+L C + W +G+ + T+ + + +L+I+
Sbjct: 243 ELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKK 302
Query: 55 LNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKK 92
+ E Y C A++ +A+++ P +
Sbjct: 303 VTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTV 340
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 127 bits (321), Expect = 1e-34
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 20/182 (10%)
Query: 6 DLTWTCEAFGVP-DVTYSWFR-NGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPE 58
+ C+ G D SWF NGE L+ +Q R + N LTI N +
Sbjct: 19 SKFFLCQVAGDAKDKDISWFSPNGEKLSP------NQQRISVVWNDDDSSTLTIYNANID 72
Query: 59 RDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP 117
D +Y+C + T+ + +++ K FK P + EG + I C+ ++
Sbjct: 73 -DAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAP--TPQEFKEGEDAVIVCDVVSSL 128
Query: 118 KPKFVWKKDGN--IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
P +WK G I+ R + N L I + + D G Y C + + + +
Sbjct: 129 PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
Query: 176 VL 177
V+
Sbjct: 189 VI 190
Score = 108 bits (271), Expect = 1e-27
Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 21/199 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV-WKKDGN--IIGSGGRRKI----FE 140
P S+ G + C K K + W + + R + +
Sbjct: 3 LQVDIVP--SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 200
+ L I + DD+GIY C T G + + ++ P + +
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 201 RCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI---DGGLLEITNASFADAGEYE 257
C + + IW H G + + ++ L+I D G Y
Sbjct: 121 VCDVVSSLPPTI--IWKHKGRDV-------ILKKDVRFIVLSNNYLQIRGIKKTDEGTYR 171
Query: 258 CVVKSTVGKISTKTTVIVE 276
C + + V
Sbjct: 172 CEGRILARGEINFKDIQVI 190
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 128 bits (322), Expect = 2e-34
Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 27/198 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
++ C+A G P W + G+ + +Q I+ + VL I+ L RD
Sbjct: 23 VASFICQATGDPRPKIVWNKKGK-------KVSNQRFEVIEFDDGSGSVLRIQPLRTPRD 75
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTL------KPSFKKRPLESETYAGEGGNVTIFCNPE 114
A+Y+C A N + S +L VL P+ P T+ C
Sbjct: 76 EAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGP--QLKVVERTRTATMLCAAS 133
Query: 115 AAPKPKFVWKKDGNIIGSGGRRKIFE------NGNLLISPVSRDDSGIYSCTATNVHGMD 168
P P+ W KD + + + G L I D G Y C ATN G
Sbjct: 134 GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR 193
Query: 169 ES-KGRLIVLHGPSYYEQ 185
S L V ++
Sbjct: 194 YSAPANLYVRGTKHHHHH 211
Score = 124 bits (313), Expect = 3e-33
Identities = 49/206 (23%), Positives = 80/206 (38%), Gaps = 18/206 (8%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-FENGN-- 143
P F + P + GG + C P+PK VW K G + + I F++G+
Sbjct: 6 PPRFTRTP--VDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS 63
Query: 144 -LLISPV-SRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKI-------TIAA 194
L I P+ + D IY C A+N G RL V + P I +
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTV-LREDQIPRGFPTIDMGPQLKVVER 122
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG 254
R + C+A ++ W + + + + N + G L+I + +D G
Sbjct: 123 TRTATMLCAASGNPDPEI--TWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQG 180
Query: 255 EYECVVKSTVG-KISTKTTVIVEGPP 279
+YECV ++ G + S + V G
Sbjct: 181 KYECVATNSAGTRYSAPANLYVRGTK 206
Score = 51.4 bits (123), Expect = 1e-07
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 216 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-DAGEYECVVKSTVGKISTKTTVI 274
W G ++ N +E + + G +L I D YECV + VG+IS T +
Sbjct: 40 WNKKGKKVSNQRFEVIEFDDGS--GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97
Query: 275 VEGPPGLPGGVQVVEVHKTSATIQ 298
V +P G +++ ++
Sbjct: 98 VLREDQIPRGFPTIDMGPQLKVVE 121
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 135 bits (339), Expect = 6e-34
Identities = 41/243 (16%), Positives = 80/243 (32%), Gaps = 17/243 (6%)
Query: 252 DAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH 311
+G +C T+ P ++ E+ ++W+
Sbjct: 134 CSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI 193
Query: 312 YKIIARTNWNSTWFNVSEHVIGKEVDRYTG-RKEASIENVLVPWSTYEFKVIAGNELGYG 370
Y + R N+ SE + + + + P Y+F+V A N G
Sbjct: 194 YVVQRRWNYGIHP---SEDDATHWQTVAQTTDERVQLTD-IRPSRWYQFRVAAVNVHGTR 249
Query: 371 EPSSPSPQYNTPAD-KPYQAPSRIGGGGGKIG-----DLSISWEPLPREKQNAPNIYYKI 424
++PS + + D AP+ + + ++I W+ E+ + P +YK+
Sbjct: 250 GFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLP--EEPDIPVHHYKV 307
Query: 425 FWRKK-NDTEFQSETLKEYGNVGIAV--VRIPSEFYYTEYEVKVQAINDVGPGP-ESEVV 480
FW + K V + +Y V++QAI G +S V
Sbjct: 308 FWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKV 367
Query: 481 TIW 483
++
Sbjct: 368 SLH 370
Score = 79.6 bits (195), Expect = 7e-16
Identities = 35/242 (14%), Positives = 66/242 (27%), Gaps = 38/242 (15%)
Query: 271 TTVIVEGPPGLPGGVQVVEVH-----KTSATIQWTDGATNGRPITHYKIIARTNWNSTWF 325
+ P P +++ + TI W P+ HYK+ +S
Sbjct: 259 RSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSL 318
Query: 326 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP--SPQYNTPA 383
++ K D + +E L P Y ++ A G S S + +
Sbjct: 319 VPTKKKRRKTTDGFQ--NSVILEK-LQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTH 375
Query: 384 DKPYQ-----------------------APSRIGGGGGKIGDLS--ISWEPLPREKQNAP 418
+ P +G + G L + W+ N
Sbjct: 376 ATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRY 435
Query: 419 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESE 478
++ + N T + + G + + + +Y+V VQ I
Sbjct: 436 HVRWFPEACAHNRT---TGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEA 492
Query: 479 VV 480
V
Sbjct: 493 VF 494
Score = 70.4 bits (171), Expect = 5e-13
Identities = 31/254 (12%), Positives = 65/254 (25%), Gaps = 44/254 (17%)
Query: 259 VVKSTVGKISTKTTVIVEGPPG-LPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR 317
+VK+ G I T+ P L G + + + W T + Y +
Sbjct: 383 LVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKK--TEDPTVNRYHV--- 437
Query: 318 TNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS--- 374
W + + T +++ L Y+ V + + +
Sbjct: 438 -RWFPEACAHNRTTGSEASSGMTHENYIILQD-LSFSCKYKVTVQPIRPKSHSKAEAVFF 495
Query: 375 ---------------------PSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPRE 413
+ KP + I SW+ +
Sbjct: 496 TTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNI-TGHFSWKM-AKA 553
Query: 414 KQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYY--------TEYEVKV 465
P +++ W + Q+ + + + + T Y ++V
Sbjct: 554 NLYQPMTGFQVTWAEVTTESRQNSL--PNSIISQSQILPSDHYVLTVPNLRPSTLYRLEV 611
Query: 466 QAINDVGPGPESEV 479
Q + G GP +
Sbjct: 612 QVLTPGGEGPATIK 625
Score = 60.4 bits (145), Expect = 9e-10
Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 6/128 (4%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFN 326
+ V P +V+ + W A +P+T +++ + N
Sbjct: 517 AGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQN 576
Query: 327 VSEHVIGKEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 385
+ I + ++ N L P + Y +V G G + + + TP
Sbjct: 577 SLPNSIISQSQILPSDHYVLTVPN-LRPSTLYRLEVQVLTPGGEGPATIKTFR--TPELP 633
Query: 386 PYQAPSRI 393
P + R
Sbjct: 634 P-SSAHRS 640
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 125 bits (316), Expect = 1e-33
Identities = 30/211 (14%), Positives = 66/211 (31%), Gaps = 13/211 (6%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART-NWNSTWFNVSEHVIGKEVD 337
P V + S ++W +G PI +K+ R W ++++ +
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 338 RYTGRKEASIENV--LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQ---APSR 392
+ ++ +V L P TY F+++A + S+ S ++ P
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 121
Query: 393 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR- 451
+ + + W + Y ++R + + E + +
Sbjct: 122 LEIEEYSETAVVLHWSL-ASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180
Query: 452 -IPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
T YE K+Q+ + S +
Sbjct: 181 LET----ATMYEFKLQSFSAASASEFSALKQ 207
Score = 64.1 bits (156), Expect = 6e-12
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 9/116 (7%)
Query: 262 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNW 320
S P +P +++ E +T+ + W+ + + IT Y R +
Sbjct: 99 SNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSS 158
Query: 321 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
++ + + G + I L + YEFK+ + + E S+
Sbjct: 159 SAGEY-FKATIEGAHARSFK------IAP-LETATMYEFKLQSFSAASASEFSALK 206
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 125 bits (315), Expect = 2e-33
Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 27/228 (11%)
Query: 155 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 214
Y+ ++ + R ++ P Q P + + + C +
Sbjct: 1 ATYAAASSAL------VPRGSHMYAPKL--QGPVAVYTWEGNQVNITCEVFAYPSATI-- 50
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 274
W +G + + + + ++ N LE+T S D G Y C + +G+ S + ++
Sbjct: 51 SWFRDGQLLPSSNYSNIKIYN-TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
Query: 275 VEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKI----IARTNWNSTWFNVSE 329
P P VE + ++A +Q+ + AT G PI YK + W+S W++ E
Sbjct: 110 QADTPSSPSID-QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 168
Query: 330 HVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
+I L P +TY ++ A N G GE S+ S
Sbjct: 169 AS---------MEGIVTIVG-LKPETTYAVRLAALNGKGLGEISAASE 206
Score = 81.8 bits (202), Expect = 6e-18
Identities = 33/137 (24%), Positives = 48/137 (35%), Gaps = 20/137 (14%)
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
A Y + + P + Y EG V I C A P
Sbjct: 1 ATYAAASSALVPRGSHMY-------APKLQGP---VAVYTWEGNQVNITCEVFAYPSATI 50
Query: 122 VWKKDGNIIGSGG--RRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
W +DG ++ S KI+ + L ++P S +D G Y+CTA N G + + L+
Sbjct: 51 SWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
Query: 177 LHGPSYYEQLPPKITIA 193
PS P I
Sbjct: 111 ADTPS-----SPSIDQV 122
Score = 51.0 bits (122), Expect = 2e-07
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQ 65
TCE F P T SWFR+G+LL S + I + L + + D Y
Sbjct: 39 TCEVFAYPSATISWFRDGQLLPS-----SNYSNIKIYNTPSASYLEVTPDSEN-DFGNYN 92
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPS 89
C A N++ L PS
Sbjct: 93 CTAVNRIGQESLEFILVQAD-TPS 115
Score = 45.6 bits (108), Expect = 1e-05
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 405 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464
+ ++ P P + YK WR + + S+ +V I T Y V+
Sbjct: 131 VQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR 189
Query: 465 VQAINDVGPGPESEVVTIWHDP 486
+ A+N G G S P
Sbjct: 190 LAALNGKGLGEISAASEFKTQP 211
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 124 bits (313), Expect = 2e-33
Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 20/215 (9%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-----------DGNIIGSGGR 135
K S S+ E ++ + C P+ WK + I
Sbjct: 1 KGSVYTAQ--SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58
Query: 136 RKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL-HGPSYYEQLPPKITIAA 194
R F + + S V+R D+G Y+C + G + + + + P + ++
Sbjct: 59 RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTI 118
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL-----ETPNINIDGGLLEITNAS 249
L CS H Y W +G+ + D + + I+ G L +
Sbjct: 119 GNRAVLTCSEHDGSPP-SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177
Query: 250 FADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 284
D+GEY C ++ G ++ GG
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVGG 212
Score = 110 bits (277), Expect = 3e-28
Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 21/189 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNG-----ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
+ TC G W + + + DR + +T + + D
Sbjct: 18 SIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK-D 76
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTL-KPSFKKRPLESETYAGEGGNVTIFCN-PEAAPK 118
Y C + Y + + L PS + G + C+ + +P
Sbjct: 77 NGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTIS--VPSSVTIGNRAVLTCSEHDGSPP 134
Query: 119 PKFVWKKDGNIIGSGGRRKIF-----------ENGNLLISPVSRDDSGIYSCTATNVHGM 167
++ W KDG + + +K ++G+L+ PV+ DSG Y C A N +G
Sbjct: 135 SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT 194
Query: 168 DESKGRLIV 176
+
Sbjct: 195 AMRSEAAHM 203
Score = 56.1 bits (135), Expect = 3e-09
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELL---NSETLPLEDQDRYFIQDNV--LTIRYLNPER 59
TC G P YSWF++G + +++ + I L +
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF- 179
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPS 89
D Y C+A+N T S + ++ +
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMDAVELN 209
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 121 bits (306), Expect = 3e-33
Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
S T V P P +++ + S + WT G N PIT + I +
Sbjct: 6 SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWH 65
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
+G + + N L P+ Y F+V+A N +G PS S QY T A +P
Sbjct: 66 -------HQTEVSGTQTTAQLN-LSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPD 117
Query: 388 QAPSRIGGGG 397
+ P+ G
Sbjct: 118 KNPTSGPSSG 127
Score = 40.0 bits (94), Expect = 2e-04
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 21/120 (17%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYY 422
G S P+P D P P + ++ D +SW P + N+P +
Sbjct: 1 GSSGSSGPTPA--PVYDVP-NPPFDL-----ELTDQLDKSVQLSWTP--GDDNNSPITKF 50
Query: 423 KI-FWRKKNDTEFQSETLKEYGNVGIAVVR-IPSEFYYTEYEVKVQAINDVGPGPESEVV 480
I + + + G A + P Y Y +V A+N +G SE
Sbjct: 51 IIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSP----YVNYSFRVMAVNSIGKSLPSEAS 106
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 124 bits (312), Expect = 3e-33
Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 20/188 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELL-----NSETLPLEDQDRYFIQDNVLTIRYLNPERD 60
+ +C G W + + + +DR +T + + E D
Sbjct: 21 PVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE-D 79
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTL-KPSFKKRPLESETYAGEGGNVTIFCN-PEAAPK 118
Y C + Y +++++ L PS + A G + C+ + +P
Sbjct: 80 TGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVN--IPSSATIGNRAVLTCSEQDGSPP 137
Query: 119 PKFVWKKDGNIIGSGGRRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGMD 168
++ W KDG ++ + + G L+ P+S D+G YSC A N +G
Sbjct: 138 SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP 197
Query: 169 ESKGRLIV 176
+ + +
Sbjct: 198 MTSNAVRM 205
Score = 122 bits (307), Expect = 2e-32
Identities = 41/206 (19%), Positives = 66/206 (32%), Gaps = 17/206 (8%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG-----------NIIGSGGRR 136
S E E E V + C P+ WK D I S R
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 137 KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL-HGPSYYEQLPPKITIAAH 195
F + V+R+D+G Y+C + G + ++ ++ P + +
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG 122
Query: 196 RNLQLRCSAHTEELLDVAYIWTHNGVRI----GNMDLNELETPNINIDGGLLEITNASFA 251
L CS Y W +G+ + + + +N G L S +
Sbjct: 123 NRAVLTCSEQDGSPP-SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 252 DAGEYECVVKSTVGKISTKTTVIVEG 277
D GEY C ++ G T V +E
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEA 207
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 123 bits (310), Expect = 5e-33
Identities = 43/206 (20%), Positives = 69/206 (33%), Gaps = 25/206 (12%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--KFVWKKDGNII---GSGGRRKIFE 140
L P + E EG + + C+P + W + + R
Sbjct: 7 LDPFPPEER--PEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64
Query: 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL---------HGPSYYEQLPPKIT 191
NGNL I+ V D G YSC ++ + I L P+ +
Sbjct: 65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
Query: 192 IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA 251
+N+ L C A + D+ W + T I+ G +L+I N
Sbjct: 125 ALMGQNVTLECFALGNPVPDI--RWRKVLEPM-------PSTAEISTSGAVLKIFNIQLE 175
Query: 252 DAGEYECVVKSTVGKISTKTTVIVEG 277
D G YEC ++ GK + + V+
Sbjct: 176 DEGIYECEAENIRGKDKHQARIYVQA 201
Score = 122 bits (308), Expect = 1e-32
Identities = 42/181 (23%), Positives = 65/181 (35%), Gaps = 16/181 (8%)
Query: 6 DLTWTCEAFG--VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPA 62
+ C+ D++Y W N + D+ R+ Q N L I + D
Sbjct: 25 GMVLLCDPPYHFPDDLSYRWLLNEFPVFIT----MDKRRFVSQTNGNLYIANVEAS-DKG 79
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLE-------SETYAGEGGNVTIFCNPEA 115
Y C + T+ ++ L P +P + YA G NVT+ C
Sbjct: 80 NYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALG 139
Query: 116 APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
P P W+K + L I + +D GIY C A N+ G D+ + R+
Sbjct: 140 NPVPDIRWRKVLEPM-PSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Query: 176 V 176
V
Sbjct: 199 V 199
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 123 bits (309), Expect = 9e-32
Identities = 47/280 (16%), Positives = 70/280 (25%), Gaps = 25/280 (8%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMYQ 65
LTW + + S+ L N L + L E D Y
Sbjct: 37 LTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVE-DEGNYT 95
Query: 66 CRAKN-QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVW 123
C +R LRVL KP + C P + W
Sbjct: 96 CLFVTFPQGSRSVDIWLRVL-AKPQNTAEV--QKVQLTGEPVPMARCVSTGGRPPAQITW 152
Query: 124 KKDGNIIGSGGRRKIFENGN------LLISPVSRDDSGIYSCTATN--VHGMDESKGRLI 175
D + + + F +G ++ P S+ D +C + L
Sbjct: 153 HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT 212
Query: 176 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235
V + P L C A + Y W+ + P
Sbjct: 213 VYYPPEVSISGYDNNWYLGQNEATLTCDARSN-PEPTGYNWSTTMGPL---------PPF 262
Query: 236 INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
G L I C V + +G + TV V
Sbjct: 263 AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 74.0 bits (181), Expect = 1e-14
Identities = 30/206 (14%), Positives = 52/206 (25%), Gaps = 39/206 (18%)
Query: 103 EGGNVTIFCNPEAAPKP-----KFVWKKDGNIIG---------------------SGGRR 136
G +VT+ C + + W + G +
Sbjct: 14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 73
Query: 137 KIFENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAH 195
N +L + + +D G Y+C T G L VL P + K+ +
Sbjct: 74 AELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE-VQKVQLTGE 132
Query: 196 RNLQLRCSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASF 250
RC + W + + N L + +S
Sbjct: 133 PVPMARCVSTG------GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQ 186
Query: 251 ADAGEYECVVKSTVGKISTKTTVIVE 276
D C V+ + TV +
Sbjct: 187 VDGKNVTCKVEHESFEKPQLLTVNLT 212
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 123 bits (309), Expect = 2e-31
Identities = 49/321 (15%), Positives = 96/321 (29%), Gaps = 49/321 (15%)
Query: 10 TCEAFGVPDVTYSWFRNGELL-----------NSETLPLEDQDRYFIQDN---VLTIRYL 55
TC A + + W + ++ L R + D L I+ L
Sbjct: 15 TCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNL 74
Query: 56 NPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA 115
E D Y C ++Q QL V L + S+T+ +G ++T+
Sbjct: 75 KIE-DSDTYICEVEDQ----KEEVQLLVFGLTAN-------SDTHLLQGQSLTLTLESPP 122
Query: 116 APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
P + + I L +S + DSG ++CT E K ++
Sbjct: 123 GSSPSVQCRSPRG-------KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV 175
Query: 176 VLHGPSYYEQLPPK---------------ITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 220
VL + K + L + + + + +
Sbjct: 176 VLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKE 235
Query: 221 VRIGNMDLNELETPNINIDGGL-LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
V + + + + L L +A +G +++ GK+ + ++V
Sbjct: 236 VSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT 295
Query: 280 GLPGGVQVVEVHKTSATIQWT 300
L + TS + +
Sbjct: 296 QLQKNLTCEVWGPTSPKLMLS 316
Score = 96.0 bits (238), Expect = 7e-22
Identities = 29/292 (9%), Positives = 64/292 (21%), Gaps = 65/292 (22%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
LT T E+ + L++ L + D +
Sbjct: 113 SLTLTLESPPGSSPSVQCRSPRGKNIQG-------------GKTLSVSQLELQ-DSGTWT 158
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPS-------------FKKRPLESETYAGEGGNVTIFCN 112
C K + VL + + F + G +
Sbjct: 159 CTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAE 218
Query: 113 PEAAPKP--KFVWKKDGNIIGSGGRRKIFE-------NGNLLISPVSRDDSGIYSCTATN 163
++ K F K + + + + L + SG +
Sbjct: 219 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA 278
Query: 164 VHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRI 223
G + L+V+ L C +
Sbjct: 279 KTGKLHQEVNLVVMRATQ--------------LQKNLTCEVWGPTSPKLMLSLKLENKEA 324
Query: 224 GNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ +AG ++C++ + G++ ++ + V
Sbjct: 325 KV--------------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361
Score = 92.9 bits (230), Expect = 9e-21
Identities = 31/210 (14%), Positives = 55/210 (26%), Gaps = 44/210 (20%)
Query: 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------------------- 140
+G V + C +F WK I G +
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 141 -NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 199
N L+I + +DS Y C + + + +L+V + + ++L
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTA-----NSDTHLLQGQSLT 115
Query: 200 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 259
L + V G L ++ D+G + C
Sbjct: 116 LTLESPPGSSPSV--QCRSPR-------------GKNIQGGKTLSVSQLELQDSGTWTCT 160
Query: 260 VKSTVGKISTKTTVIVEGPPGLPGGVQVVE 289
V K+ K ++V V E
Sbjct: 161 VLQNQKKVEFKIDIVVLAFQKASSIVYKKE 190
Score = 34.8 bits (79), Expect = 0.064
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 18/83 (21%)
Query: 4 QADLTWTCEAFGV--PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDP 61
Q TCE +G P + S + ++ +
Sbjct: 296 QLQKNLTCEVWGPTSPKLMLSLKLENKEAKV--------------SKREKAVWVLNP-EA 340
Query: 62 AMYQCRAKNQLKTRYSSAQLRVL 84
M+QC + + S ++VL
Sbjct: 341 GMWQCLLSDSGQVLLES-NIKVL 362
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 121 bits (303), Expect = 1e-30
Identities = 42/296 (14%), Positives = 76/296 (25%), Gaps = 40/296 (13%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFI-----QDNVLTIRYLNPERDP 61
+TW G + + ++ ++R D + + L E D
Sbjct: 50 VTWQKSTNGSKQNVAIYNPS----MGVSVLAPYRERVEFLRPSFTDGTIRLSRLELE-DE 104
Query: 62 AMYQCRAKN-QLKTRYSSAQLRVLTLKPSFKKRPLESETYAG---EGGNVTIFCN-PEAA 116
+Y C R S L V+ KP+ ++ A + + C
Sbjct: 105 GVYICEFATFPTGNRESQLNLTVMA-KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGK 163
Query: 117 PKPKFVWKKDGNIIG-----SGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
P W+ + + P +C +
Sbjct: 164 PPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKES 223
Query: 172 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD-----VAYIWTHNGVRIGNM 226
L V + P + +++L C A D Y WT
Sbjct: 224 LTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA------DANPPATEYHWTTLN------ 271
Query: 227 DLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
L + L +++ AG Y C + +G S + V + L
Sbjct: 272 --GSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALE 325
Score = 42.8 bits (100), Expect = 2e-04
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 18/123 (14%)
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY--IWTHNGVRIGNMDLNELETPN 235
PS Q+ + ++ L CS W + +
Sbjct: 12 RDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG 71
Query: 236 INIDG---------------GLLEITNASFADAGEYECVVKST-VGKISTKTTVIVEGPP 279
+++ G + ++ D G Y C + G ++ + V P
Sbjct: 72 VSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKP 131
Query: 280 GLP 282
Sbjct: 132 TNW 134
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 116 bits (293), Expect = 2e-30
Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 37/202 (18%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69
C A G P V Y WF+ + + + + L ++ + D Y CR
Sbjct: 39 CCRATGHPFVQYQWFKMNKEIPNGN------------TSELIFNAVHVK-DAGFYVCRVN 85
Query: 70 NQLKTRYSS-AQLRVLTL--------------KPSFKKRPLESETYAGEGGNVTIFCNPE 114
N +S +QL V + K P + G + + C
Sbjct: 86 NNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP--TSQKLMPGSTLVLQCVAV 143
Query: 115 AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRL 174
+P P + W K+ + ++ ++ V + G Y C N +SK
Sbjct: 144 GSPIPHYQWFKNELPLTHETKK------LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 197
Query: 175 IVLHGPSYYEQLPPKITIAAHR 196
I++ + P +
Sbjct: 198 IIIDELNNLGH-PDNKEQTTDQ 218
Score = 113 bits (285), Expect = 3e-29
Identities = 38/220 (17%), Positives = 63/220 (28%), Gaps = 40/220 (18%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 147
P G V + C P ++ W K I +G L+ +
Sbjct: 19 SKITVNP--ESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------NTSELIFN 70
Query: 148 PVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQL--------------PPKITI 192
V D+G Y C N + S+ +L V P +++ P +
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130
Query: 193 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 252
L L+C A + Y W N + + + L +
Sbjct: 131 MPGSTLVLQCVAVGSPIPH--YQWFKNELPLTHET------------KKLYMVPYVDLEH 176
Query: 253 AGEYECVVKSTVGKI-STKTTVIVEGPPGL--PGGVQVVE 289
G Y C V + S K +I++ L P +
Sbjct: 177 QGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216
Score = 66.4 bits (162), Expect = 9e-13
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 14/98 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L C A G P Y WF+N L ET + + Y++ E Y
Sbjct: 135 TLVLQCVAVGSPIPHYQWFKNELPLTHET------------KKLYMVPYVDLE-HQGTYW 181
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGE 103
C N ++ S ++ + P E +
Sbjct: 182 CHVYNDRDSQDSKKVEIIIDELNNL-GHPDNKEQTTDQ 218
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 114 bits (286), Expect = 9e-30
Identities = 40/182 (21%), Positives = 59/182 (32%), Gaps = 24/182 (13%)
Query: 6 DLTWTCEAFG--VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
+T C + W +NG L R + I E D
Sbjct: 20 PVTLQCNLTSSSHTLMYSYWTKNGVEL--------TATRKNASNMEYRINKPRAE-DSGE 70
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
Y C + + ++A + V P EG + ++C P P+++W
Sbjct: 71 YHCVY-HFVSAPKANATIEVKA-APDITGHK--RSENKNEGQDAMMYCKSVGYPHPEWMW 126
Query: 124 KKDGNII-----GSGGRRKIFENGN---LLISPVS-RDDSGIYSCTATNVHGMDESKGRL 174
+K N + S GR I N L I + +D G Y C ATN G L
Sbjct: 127 RKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVL 186
Query: 175 IV 176
V
Sbjct: 187 RV 188
Score = 105 bits (263), Expect = 1e-26
Identities = 36/194 (18%), Positives = 59/194 (30%), Gaps = 13/194 (6%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSGGRRKIFENGNL 144
+P VT+ CN ++ W K+G + + RK N
Sbjct: 3 EPRIVTSE--EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT--RKNASNMEY 58
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 204
I+ +DSG Y C V ++ + V ++ + C +
Sbjct: 59 RINKPRAEDSGEYHCVYHFV-SAPKANATIEV-KAAPDITGHKRSENKNEGQDAMMYCKS 116
Query: 205 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFA-DAGEYECVVK 261
+ +W + N I L I N D GEYEC
Sbjct: 117 VGYPHPEW--MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNAT 174
Query: 262 STVGKISTKTTVIV 275
+++G S T + V
Sbjct: 175 NSIGSASVSTVLRV 188
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 113 bits (285), Expect = 1e-29
Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 23/196 (11%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE-----NG 142
P + +G V + C+ E +P W KDG ++ + + I G
Sbjct: 3 LKLMGAP--VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRC 202
L + V R D+G Y C + + S+ + + G ++ P + + + QL C
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSC 120
Query: 203 SAH-TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 261
A E + + W +IG + +L +T + + + C
Sbjct: 121 EAVGPPEPVTIV--WWRGTTKIGGPAPSPS----------VLNVTGVT--QSTMFSCEAH 166
Query: 262 STVGKISTKT-TVIVE 276
+ G S++T TV ++
Sbjct: 167 NLKGLASSRTATVHLQ 182
Score = 108 bits (271), Expect = 1e-27
Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 25/181 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN------VLTIRYLNPER 59
+ C G+ + W ++G +++ D+ +I + L+++ +
Sbjct: 19 PVKLNCSVEGMEEPDIQWVKDGA-------VVQNLDQLYIPVSEQHWIGFLSLKSVERS- 70
Query: 60 DPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK 118
D Y C+ ++ +T S L V + P F P + + C P+
Sbjct: 71 DAGRYWCQVEDGGETEISQPVWLTVEGV-PFFTVEP--KDLAVPPNAPFQLSCEAVGPPE 127
Query: 119 PKFV-WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
P + W + IG +++ S ++SC A N+ G+ S+ + L
Sbjct: 128 PVTIVWWRGTTKIGGP------APSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
Query: 178 H 178
Sbjct: 182 Q 182
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 112 bits (281), Expect = 7e-29
Identities = 35/203 (17%), Positives = 62/203 (30%), Gaps = 12/203 (5%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW--KKDGNIIGSGGRRKIFENGN-L 144
S + + V I C + + G R +++
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLR 201
I +G+ C A +S ++V+ G Y+ I ++ L L
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 202 CSAHTEELLDVAYIWTHNGVRIGNM-----DLNELETPNINIDGGLLEITNASFADAGEY 256
C+A TE + + + W + + + DL + L I + +D G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186
Query: 257 ECVVKSTVGKISTKTTVIVEGPP 279
C S + T V V P
Sbjct: 187 TCAASSGLMTKKNSTFVRVHEDP 209
Score = 80.6 bits (198), Expect = 1e-17
Identities = 27/189 (14%), Positives = 51/189 (26%), Gaps = 19/189 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ C + ++ S + + + TI M
Sbjct: 26 TVVIPCLG-SISNLNVSLCARY---PEKRFVPDGNRISWDSKKGFTIPSYMI-SYAGMVF 80
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLES-ETYAGEGGNVTIFCNPEAAP--KPKFV 122
C AK ++ S + V+ + S G + + C F
Sbjct: 81 CEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 140
Query: 123 WKKDGNIIGSG-----------GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
W+ + G L I V+R D G+Y+C A++ ++
Sbjct: 141 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 200
Query: 172 GRLIVLHGP 180
+ V P
Sbjct: 201 TFVRVHEDP 209
Score = 31.7 bits (71), Expect = 0.43
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
I + + AG C K + ++V +
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 105
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 114 bits (286), Expect = 8e-29
Identities = 42/277 (15%), Positives = 74/277 (26%), Gaps = 26/277 (9%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
TC W R + E +D +VLT+ L D Y C
Sbjct: 18 FVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTF----SSVLTLTNLTGL-DTGEYFC 68
Query: 67 RAKNQL---KTRYSSAQLRVLTLKPSFKKRPLESET-YAGEGGNVTIFCNPEAAPKPKFV 122
+ + V F E + E +TI C P+
Sbjct: 69 THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVT 127
Query: 123 WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 182
+ + + + Y C T +S + S
Sbjct: 128 LHEKKGDVALPVPY------DHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSS 181
Query: 183 Y--EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM--DLNELETPNINI 238
+ + N+ L C E+++ WT+ G + + +
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNF--EWTYPRKESGRLVEPVTDFLLDMPYH 239
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+L I +A D+G Y C V +V + + +
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 66.6 bits (162), Expect = 2e-12
Identities = 29/244 (11%), Positives = 62/244 (25%), Gaps = 44/244 (18%)
Query: 94 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGNLLISPVSR 151
P E + C+ VW++ + + L ++ ++
Sbjct: 5 PPGPELVLNVSSTFVLTCSGS----APVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTG 60
Query: 152 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYY------EQLPPKITIAAHRNLQLRCSAH 205
D+G Y CT + G++ + + + + P + I + + + C
Sbjct: 61 LDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT 120
Query: 206 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265
+L G++ L G + Y C
Sbjct: 121 DPQL---VVTLHEKK---GDVALPVPYDHQRGFSG---------IFEDRSYICKTTIGDR 165
Query: 266 KI-STKTTVIVEGPPGLPGGVQVVEVH---------------KTSATIQWT-DGATNGRP 308
++ S V + V V+ +WT +GR
Sbjct: 166 EVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRL 225
Query: 309 ITHY 312
+
Sbjct: 226 VEPV 229
Score = 49.7 bits (118), Expect = 7e-07
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLED--QDRYFIQDNVLTIRYLNPERDPAM 63
++T C G V + W + P+ D D + ++L I E D
Sbjct: 198 NITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELE-DSGT 256
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSF 90
Y C + + + ++
Sbjct: 257 YTCNVTESVNDHQDEKAINITVVESGH 283
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 111 bits (278), Expect = 1e-28
Identities = 40/205 (19%), Positives = 65/205 (31%), Gaps = 26/205 (12%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNII------------GSGG 134
F P G T+ C + P+ W +DG I+ G
Sbjct: 3 SPFVGNP--GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60
Query: 135 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 194
+ L I+ + D+G Y C H S+ + L G Y+ + P T+AA
Sbjct: 61 QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAA 120
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG 254
+ L C A V +W + V L T + L + +
Sbjct: 121 NTPFNLSCQA-QGPPEPVDLLWLQDAV--------PLATAPGHGPQRSLHVPGLN--KTS 169
Query: 255 EYECVVKSTVGKISTKTTVIVEGPP 279
+ C + G +++T I P
Sbjct: 170 SFSCEAHNAKGVTTSRTATITVLPQ 194
Score = 101 bits (254), Expect = 3e-25
Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 25/193 (12%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSET-----LPLEDQDRYFIQDN-VLTIRYLNPE 58
T C+ W R+G++L +PL + ++ L I L
Sbjct: 19 TGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLS 78
Query: 59 RDPAMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP 117
D YQC +T S + + L P F + P + + C + P
Sbjct: 79 -DTGQYQCLVFLGHQTFVSQPGYVGLEGL-PYFLEEP--EDRTVAANTPFNLSCQAQGPP 134
Query: 118 KPKFV-WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+P + W +D + + +L + ++ + +SC A N G+ S+ I
Sbjct: 135 EPVDLLWLQDAVPLATAPGH--GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATIT 190
Query: 177 LHGPSYYEQLPPK 189
LP +
Sbjct: 191 --------VLPQQ 195
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 110 bits (277), Expect = 2e-28
Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 35/215 (16%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
F K L E E G V + E K + + I G + K+ + N
Sbjct: 3 DPFTKSELAVE--ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 144 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQL--------------- 186
+ + + +D G Y+ + + S L+ ++
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 187 --PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-- 242
+ N+ L+C + +W + I + G+
Sbjct: 121 VEYLSWEVTGECNVLLKCKV-ANIKKETHIVWYKDEREI-------SVDEKHDFKDGICT 172
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
L IT S DAG YE ++K GK ++ ++ E
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 207
Score = 103 bits (257), Expect = 2e-25
Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 31/191 (16%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--DNV----LTIRYLNPERDPA 62
W + ++ N + + + +Y + N + + L E D
Sbjct: 23 WMQAEKLSGNAKVNYIFNEK-------EIFEGPKYKMHIDRNTGIIEMFMEKLQDE-DEG 74
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAG---------------EGGNV 107
Y + ++ T +S+ L K K+ + + + NV
Sbjct: 75 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNV 134
Query: 108 TIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFE-NGNLLISPVSRDDSGIYSCTATNVH 165
+ C K VW KD I + + LLI+ S+ D+GIY +
Sbjct: 135 LLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 194
Query: 166 GMDESKGRLIV 176
G D+S+ +L+
Sbjct: 195 GKDKSRLKLVD 205
Score = 41.5 bits (97), Expect = 2e-04
Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 214 YIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKT 271
+ N I ++ + G+ + + D G Y ++ +
Sbjct: 35 VNYIFNEKEIFEGPKYKMHIDR---NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTV 91
Query: 272 TVIVEGPPGLP 282
++ + L
Sbjct: 92 VLVGDVFKKLQ 102
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 108 bits (272), Expect = 2e-27
Identities = 33/194 (17%), Positives = 53/194 (27%), Gaps = 34/194 (17%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQ 65
+ + V D+ +W NG + DR L I P D Y
Sbjct: 24 SFVTYYVEDLKVNWSHNGS-------AIRYSDRVKTGVTGEQIWLQINEPTPN-DKGKYV 75
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKK------------------RPLESETYAGEGGNV 107
+ + L ++ + L EG +
Sbjct: 76 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 135
Query: 108 TIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATN 163
+ CN P P+ W K+ + + I+ VS DSG Y N
Sbjct: 136 NLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 195
Query: 164 VHGMDESKGRLIVL 177
+G + S + V
Sbjct: 196 KYGSETSDFTVSVF 209
Score = 106 bits (267), Expect = 7e-27
Identities = 42/210 (20%), Positives = 68/210 (32%), Gaps = 31/210 (14%)
Query: 93 RPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGRRKIFENGN---LLISP 148
L+ ++ EG + ++ K W +G+ I R K G L I+
Sbjct: 9 TDLKIQS-TAEG--IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINE 65
Query: 149 VSRDDSGIYSCTATNVHGMDESKGRLIVL--------------------HGPSYYEQLPP 188
+ +D G Y + + L + LP
Sbjct: 66 PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD 125
Query: 189 KITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA 248
+TI + L L C+ + +V W N + D L+ I
Sbjct: 126 VVTIQEGKALNLTCNVWGDPPPEV--SWLKNEKALAQTDHCNLK--FEAGRTAYFTINGV 181
Query: 249 SFADAGEYECVVKSTVGKISTKTTVIVEGP 278
S AD+G+Y VVK+ G ++ TV V P
Sbjct: 182 STADSGKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 47.6 bits (113), Expect = 2e-06
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 15/110 (13%)
Query: 190 ITIAAHRNLQLRCSAHTEELL--------DVAYIWTHNGVRIGNMDLNELETPNINIDGG 241
+ +L+++ +A +L D+ W+HNG I D + + G
Sbjct: 3 SIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK-----TGVTGE 57
Query: 242 L--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 289
L+I + D G+Y + + + Q ++
Sbjct: 58 QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 107
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 108 bits (271), Expect = 2e-27
Identities = 41/209 (19%), Positives = 63/209 (30%), Gaps = 16/209 (7%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNSTWFNVSEHVIG 333
P P GVQ + + I W D + +Y + +TN +
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK---YKNAN 60
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 393
Y + L P + YEF V+ S + T P P +
Sbjct: 61 ATTLSYL------VTG-LKPNTLYEFSVMVTKGRRSSTWSMTAHGT-TFELVPTSPPKDV 112
Query: 394 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 453
+ +I P + N Y I++ + E ++ +I
Sbjct: 113 TVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVG-NRLTHQIQ 171
Query: 454 SEFYYTEYEVKVQAINDVGPGPESEVVTI 482
T Y K+QA N G GP SE V
Sbjct: 172 ELTLDTPYYFKIQARNSKGMGPMSEAVQF 200
Score = 67.1 bits (164), Expect = 5e-13
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 6/102 (5%)
Query: 383 ADKPYQAPSRIGGGGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
AD P P + + I+W LP+ ++ + YY + W+ + +
Sbjct: 1 ADLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA- 59
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
N + T YE V S
Sbjct: 60 ---NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHG 98
Score = 53.3 bits (128), Expect = 3e-08
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 276 EGPPGLPG---GVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
E P P V E + + W + IT Y I T+ N+ + +
Sbjct: 102 ELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPV 161
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ I+ L + Y FK+ A N G G S
Sbjct: 162 VGNRLTHQ------IQE-LTLDTPYYFKIQARNSKGMGPMSEA 197
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 110 bits (275), Expect = 5e-27
Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 22/302 (7%)
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
E +T ++ L C E + W G+
Sbjct: 5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPED-NATVHWVLRKPAAGS------HPSRWAG 57
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 298
G L + + D+G Y C G+ + ++V+ PP P + ++ +
Sbjct: 58 MGRRLLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCE 114
Query: 299 WTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYE 358
W + T ++ R NS + + + + + + S Y
Sbjct: 115 WGP-RSTPSLTTKAVLLVRKFQNSPA---EDFQEPCQYSQESQKFSCQLAVPEGDSSFYI 170
Query: 359 FKVIAGNELGYGE--PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQN 416
+ + +G + D P + LS++W+ +
Sbjct: 171 VSMCVASSVGSKFSKTQTFQGCGILQPDPPAN--ITVTAVARNPRWLSVTWQDPHSWNSS 228
Query: 417 APNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE 476
+ +++ +R + F + +K+ + I + + V+++A + G G
Sbjct: 229 FYRLRFELRYRAERSKTFTTWMVKDLQH----HCVIHDAWSGLRHVVQLRAQEEFGQGEW 284
Query: 477 SE 478
SE
Sbjct: 285 SE 286
Score = 92.6 bits (229), Expect = 8e-21
Identities = 53/317 (16%), Positives = 87/317 (27%), Gaps = 30/317 (9%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLL 145
P+ + + G +VT+ C E W GS R LL
Sbjct: 6 CPAQEVAR--GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205
+ V DSG YSC G L+V P + + N+
Sbjct: 64 LRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQLS--CFRKSPLSNVVCEWGPR 118
Query: 206 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYE--CVVKST 263
+ L + + + + D+ Y V S+
Sbjct: 119 STPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASS 178
Query: 264 VGKISTKTTVIV------EGPPGLPGGVQVVEVHKTSATIQWTD--GATNGRPITHYKII 315
VG +KT PP V V + ++ W D + +++
Sbjct: 179 VGSKFSKTQTFQGCGILQPDPPANI-TVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELR 237
Query: 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
R + T+ + I + + ++ A E G GE S
Sbjct: 238 YRAERSKTF---------TTWMVKDLQHHCVIHD-AWSGLRHVVQLRAQEEFGQGEWSEW 287
Query: 376 SP-QYNTPADKPYQAPS 391
SP TP + P+
Sbjct: 288 SPEAMGTPWTESRSPPA 304
Score = 32.9 bits (74), Expect = 0.19
Identities = 14/79 (17%), Positives = 21/79 (26%), Gaps = 11/79 (13%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+T TC + T W S R+ L +R + D Y
Sbjct: 23 SVTLTCPGVEPEDNATVHWVLRKPAAGSH------PSRWAGMGRRLLLRSVQLH-DSGNY 75
Query: 65 QCRAKNQLKTRYSSAQLRV 83
C + + L V
Sbjct: 76 SCYRAGRPA---GTVHLLV 91
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 103 bits (260), Expect = 7e-27
Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
T ++ + PG P + + + S T+Q+ G I+ + + A+
Sbjct: 7 GTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEG--- 63
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
E ++ ++ + + + L P++ Y F++ N +G PS PS + T P
Sbjct: 64 EEWLLIHQLSNEPDARSMEVPD-LNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGP 121
Score = 34.2 bits (79), Expect = 0.023
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 24/123 (19%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAP---- 418
G S P + P P+ + I ++ + + P
Sbjct: 1 GSSGSSGTI-SSGVPPELP-GPPTNL-----GISNIGPRSVTLQFRP--GYDGKTSISRW 51
Query: 419 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPE 476
+ ++ + + L + V P +T Y +++ +N VG P
Sbjct: 52 LVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNP----FTCYSFRMRQVNIVGTSPP 107
Query: 477 SEV 479
S+
Sbjct: 108 SQP 110
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 105 bits (264), Expect = 2e-26
Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 29/216 (13%)
Query: 274 IVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
P P + VE + ++A +Q+ + AT G PI YK R W +
Sbjct: 4 AQADTPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWY--- 59
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR 392
+ + +I L P +TY ++ A N G GE S+ S ++ T + AP
Sbjct: 60 --DAKEASMEGIVTIVG-LKPETTYAVRLAALNGKGLGEISAAS-EFKTQPVREPSAPKL 115
Query: 393 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 452
G G + ++ +P +Y + +R + +
Sbjct: 116 EGQMGEDGNSIKVNLIKQDD--GGSPIRHYLVRYRALSSEWKPEIR-----------LPS 162
Query: 453 PSEFY-------YTEYEVKVQAINDVGPGPESEVVT 481
S+ EYEV V A N G + V
Sbjct: 163 GSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVF 198
Score = 67.1 bits (164), Expect = 5e-13
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 14/122 (11%)
Query: 264 VGKISTKTTVIVEG--PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWN 321
+G+IS + + P P + S + G PI HY + R +
Sbjct: 93 LGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRAL-S 151
Query: 322 STWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 381
S W D +++ L + YE V+A N+ G + + + T
Sbjct: 152 SEWKPEIRLPS--GSDHVM------LKS-LDWNAEYEVYVVAENQQGKSKAAHFVFR--T 200
Query: 382 PA 383
A
Sbjct: 201 AA 202
Score = 47.1 bits (112), Expect = 3e-06
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
AD P +PS + ++ P P + YK WR + + S+
Sbjct: 4 AQADTP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 60
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+V I T Y V++ A+N G G S
Sbjct: 61 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 102
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 107 bits (268), Expect = 2e-26
Identities = 35/256 (13%), Positives = 67/256 (26%), Gaps = 26/256 (10%)
Query: 34 TLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKR 93
T + + N Y C N SS + V
Sbjct: 43 TFKTYFNEMVENKKNEWIQEKAEAT-RTGTYTCSNSN---GLTSSIYVFVRD-PAKLFLV 97
Query: 94 PLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLISPVSR- 151
+ E + + C ++ + DG + + + I V R
Sbjct: 98 G--LPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRA 155
Query: 152 DDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQLPPKITIAAHR-------NLQLRCS 203
C A S L V P +++ + C+
Sbjct: 156 YHRLCVRCAAQRDGTWLHSDKFTLKVREAIKA----IPVVSVPETSHLLKKGDTFTVVCT 211
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG----GLLEITNASFADAGEYECV 259
+ V +W + ++ + + + L I++A D+G + C
Sbjct: 212 I-KDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCY 270
Query: 260 VKSTVGKISTKTTVIV 275
+T G + TT+ V
Sbjct: 271 ANNTFGSANVTTTLKV 286
Score = 90.9 bits (225), Expect = 1e-20
Identities = 31/186 (16%), Positives = 50/186 (26%), Gaps = 20/186 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMY 64
D C YS L + +TI+ +
Sbjct: 108 DALVRCPLTDPQVSQYSLIECD------GKSLPTDLTFVPNPKAGITIKNVKRAYHRLCV 161
Query: 65 QCRAKNQLKTRYSSA-QLRVLTLKPSFKKRPLE-SETYAGEGGNVTIFCNPEAAPKP-KF 121
+C A+ +S L+V + + + +G T+ C +
Sbjct: 162 RCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNS 221
Query: 122 VWKKDGNIIGSGGRRKIF----------ENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
+W K + K L IS DDSG++ C A N G
Sbjct: 222 MWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVT 281
Query: 172 GRLIVL 177
L V+
Sbjct: 282 TTLKVV 287
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 107 bits (269), Expect = 5e-26
Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 15/198 (7%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLI 146
P+ K + G +V + C E + W + + + + L +
Sbjct: 159 PTLKVQV--PNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 147 SPVSR-DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205
+ V+ + +C A N G E ++ V + T + + S
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNV-----SFPASVQLHTAVEMHHWCIPFSVD 271
Query: 206 TEELLDVAYIWTHNGVRIGNMDL----NELETPNINIDGGLLEITNASFADAGEYECVVK 261
+ + W NG + N + G L + + + G Y +
Sbjct: 272 GQPAPSLR--WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329
Query: 262 STVGKISTKTTVIVEGPP 279
+ G+ S P
Sbjct: 330 NPFGQASASIMAAFMDNP 347
Score = 98.3 bits (244), Expect = 9e-23
Identities = 26/185 (14%), Positives = 55/185 (29%), Gaps = 22/185 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
D+ C+ G W ++ + LT+ + + +
Sbjct: 175 DVLLRCQVEGRGLEQAGWILTELEQSATV-----MKSGGLPSLGLTLANVTSDLNRKNVT 229
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKK 125
C A+N + S Q+ V +E I + + P P W
Sbjct: 230 CWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHH-------WCIPFSVDGQPAPSLRWLF 282
Query: 126 DGNII----------GSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
+G+++ + +G L ++ + ++G Y+ A N G +
Sbjct: 283 NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 342
Query: 176 VLHGP 180
+ P
Sbjct: 343 FMDNP 347
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 104 bits (260), Expect = 6e-26
Identities = 38/214 (17%), Positives = 64/214 (29%), Gaps = 35/214 (16%)
Query: 99 TYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG-------------------GRRKIF 139
E NV + + F W K GR I+
Sbjct: 9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY 68
Query: 140 ENGNLLISPVSRDDSGIYSCTATNVHGMDESK-GRLIVLHGPSYYEQLPPKITIAAHRNL 198
NG+LL ++ D G+Y+ T+ + R V + T+ ++
Sbjct: 69 SNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSV 128
Query: 199 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
L C ++ W N L E ++ + +L I DAGEY+C
Sbjct: 129 TLTCLSNDIG---ANIQWLFNSQS-----LQLTERMTLSQNNSILRIDPIKREDAGEYQC 180
Query: 259 VVKSTVG-KISTKTTVIVEGPPGLPGGVQVVEVH 291
+ + V + S + + P H
Sbjct: 181 EISNPVSVRRSNSIKLDIIFDP------HHHHHH 208
Score = 97.0 bits (241), Expect = 2e-23
Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 18/192 (9%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELL------------NSETLPLEDQDRYFIQDN-VLTI 52
++ + ++W++ N R I N L
Sbjct: 16 NVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLF 75
Query: 53 RYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN 112
+ + + D +Y ++ R + + + + + T E +VT+ C
Sbjct: 76 QMITMK-DMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVK-ELDSVTLTCL 133
Query: 113 PEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLL-ISPVSRDDSGIYSCTATNVHGMDESK 171
W + + R + +N ++L I P+ R+D+G Y C +N + S
Sbjct: 134 SND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSN 192
Query: 172 G-RLIVLHGPSY 182
+L ++ P +
Sbjct: 193 SIKLDIIFDPHH 204
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 109 bits (274), Expect = 7e-26
Identities = 50/307 (16%), Positives = 83/307 (27%), Gaps = 31/307 (10%)
Query: 190 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNG----VRIGNMDLNELETPNINIDGGLLEI 245
+ ++ C+ E L+ + G + L
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299
Query: 246 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-T 304
+ + G C + + + P ++WT +
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDS 359
Query: 305 NGRPITHYKIIARTNW--NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVI 362
GR Y + W + V E R ++ + L P Y F V
Sbjct: 360 GGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSD-LEPHMNYTFTVE 418
Query: 363 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYY 422
A N + S P ++ G LS+SW P Q + Y
Sbjct: 419 ARNGVSGLVTSRSFRT--ASVSINQTEPPKVRLEGRSTTSLSVSWSIPPP--QQSRVWKY 474
Query: 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGP 475
++ +RKK D+ + V R T Y V+VQA+ G G
Sbjct: 475 EVTYRKKGDSNSYN------------VRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGA 522
Query: 476 ESEVVTI 482
S+V
Sbjct: 523 GSKVHEF 529
Score = 67.5 bits (164), Expect = 4e-12
Identities = 44/313 (14%), Positives = 81/313 (25%), Gaps = 55/313 (17%)
Query: 111 CNPEAAPKPKFVWKKDGNIIGSGGRRK------------------------IFENGNLLI 146
P +P+ DG + G+
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS--- 203
G SC + P P A ++
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPP----SAPHYLTAVGMGAKVELRWTP 355
Query: 204 -AHTEELLDVAYI--WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD---AGEYE 257
+ D+ Y G E GL T+ + +D Y
Sbjct: 356 PQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTR-TSVTVSDLEPHMNYT 414
Query: 258 CVVKST--VGKISTKTTVIV---EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHY 312
V++ V + T + P V++ TS ++ W+ + Y
Sbjct: 415 FTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKY 474
Query: 313 KIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 372
++ R +S +NV T ++++ L P +TY +V A + G G
Sbjct: 475 EVTYRKKGDSNSYNVRR----------TEGFSVTLDD-LAPDTTYLVQVQALTQEGQGAG 523
Query: 373 SSPSPQYNTPADK 385
S ++ T + +
Sbjct: 524 SKVH-EFQTLSPE 535
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 105 bits (263), Expect = 9e-26
Identities = 52/277 (18%), Positives = 85/277 (30%), Gaps = 43/277 (15%)
Query: 10 TCEAFGV---PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
C G+ + + LN D ++ + C
Sbjct: 24 VCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA-----KASVSVTAEDEGTQRLTC 78
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
+++ + + + + P+ + E EG VT+ C EA P+ K +
Sbjct: 79 AVILGNQSQETLQTVTIYS-FPAPNVILTKPE--VSEGTEVTVKC--EAHPRAK--VTLN 131
Query: 127 GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN-VHGMDESKGR---LIVLHGPS- 181
G G R LL+ D+ +SC+AT V G K + L VL+GP
Sbjct: 132 GVPAQPLGPR-----AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRL 186
Query: 182 YYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241
P T + C A L +G
Sbjct: 187 DERDCPGNWTWPENSQQTPMCQAWGNPL--PELKCLKDGTFPLP---------------- 228
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
+ E + G Y C +ST G+++ + TV V P
Sbjct: 229 IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
Score = 92.0 bits (228), Expect = 4e-21
Identities = 38/177 (21%), Positives = 53/177 (29%), Gaps = 31/177 (17%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
++T CEA VT + L + PE + +
Sbjct: 115 EVTVKCEAHPRAKVTLNGVPAQPLG----------------PRAQLLLKATPEDNGRSFS 158
Query: 66 CRAKN----QLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
C A QL + + +LRVL P +R E T C P P+
Sbjct: 159 CSATLEVAGQLIHKNQTRELRVLY-GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL 217
Query: 122 VWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLH 178
KDG G V+RD G Y C A + G + + VL
Sbjct: 218 KCLKDGTFPLPIGE----------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 32.3 bits (73), Expect = 0.28
Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 9/98 (9%)
Query: 187 PPKIT----IAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGG 241
PP++ + + CS + A + R+ ++ +
Sbjct: 6 PPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAK---- 61
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
A C V T TV + P
Sbjct: 62 ASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 99
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 101 bits (254), Expect = 2e-25
Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 28/177 (15%)
Query: 7 LTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T TC + WF NG L ++ L I E D Y+
Sbjct: 22 VTLTCNGNNFFEVSSTKWFHNGSLSEE-------------TNSSLNIVNAKFE-DSGEYK 67
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWK 124
C+ + S + + + S EG + + C+ K ++
Sbjct: 68 CQHQQ----VNESEPVYLEVFSDWLLLQA--SAEVVMEGQPLFLRCHGWRNWDVYKVIYY 121
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGP 180
KDG + EN N+ I+ + +DSG Y CT ES+ + V+ P
Sbjct: 122 KDGEALKYWY-----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 90.3 bits (224), Expect = 2e-21
Identities = 39/195 (20%), Positives = 63/195 (32%), Gaps = 27/195 (13%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLL 145
KP P +G NVT+ CN + W +G++ N +L
Sbjct: 4 KPKVSLNP--PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------TNSSLN 54
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205
I +DSG Y C V+ + L V + + + L LRC
Sbjct: 55 IVNAKFEDSGEYKCQHQQVNESEPV--YLEVFSDWLLLQ--ASAEVVMEGQPLFLRCHGW 110
Query: 206 TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVG 265
+ I+ +G + + + ITNA+ D+G Y C K
Sbjct: 111 RNWDV-YKVIYYKDGEALKYWY-----------ENHNISITNATVEDSGTYYCTGKVWQL 158
Query: 266 KISTKT-TVIVEGPP 279
++ + V P
Sbjct: 159 DYESEPLNITVIKAP 173
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 98.6 bits (246), Expect = 5e-25
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 9/120 (7%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS-TWFN 326
++ PP P + +TS + W G PI +++ + W
Sbjct: 7 GSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWIL 66
Query: 327 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ + I L +Y+F+V A N LG EPS+PS Y P
Sbjct: 67 ATSAIPPSR-------LSVEITG-LEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGP 118
Score = 35.4 bits (82), Expect = 0.010
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 23/122 (18%)
Query: 372 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKIFW 426
SS S + P +AP R I S ++W P P +++ +
Sbjct: 4 GSSGSQPDHGRLSPP-EAPDRP-----TISTASETSVYVTWIPRGNG--GFPIQSFRVEY 55
Query: 427 RKKNDT-EFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVG---PGPESEVV 480
+K ++ T + + Y+ +V+A+N +G P S
Sbjct: 56 KKLKKVGDWILATSAIPPSRLSVEITGLEK----GISYKFRVRALNMLGESEPSAPSRPY 111
Query: 481 TI 482
+
Sbjct: 112 VV 113
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 103 bits (258), Expect = 8e-25
Identities = 46/311 (14%), Positives = 96/311 (30%), Gaps = 52/311 (16%)
Query: 6 DLTWTCEAFG----VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDP 61
T T G ++TY+W ++ + + T LT+ E +
Sbjct: 19 GFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT-------------ATLTVADATSE-NA 64
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN--------P 113
Y+ ++ +++ ++ Y +V + P
Sbjct: 65 GSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTP 124
Query: 114 EAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGR 173
+ + W K ++I + ++ I + D +G+Y+ +
Sbjct: 125 ADNYELHYSWSKGEDVIDT--------TQDITIQEFTADKNGVYTVKVWGESEDSAASAS 176
Query: 174 LIVLHGPSYYEQLPPK-ITIAAHRNLQLRCSAHTEELLD--------VAYIWTHNG---- 220
++ +Q + T+A + L + + D + Y W
Sbjct: 177 TKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQL 236
Query: 221 --VRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
IG+ LE +I DG L +A++ D ++ CV K TV V
Sbjct: 237 SPTLIGSEVGEALEGFSITPDGHLF-KESATYDDTAKFWCVAKLYQQ--IEDETVEVAAS 293
Query: 279 PGLPGGVQVVE 289
++VV+
Sbjct: 294 TSRKCSMEVVK 304
Score = 92.2 bits (228), Expect = 6e-21
Identities = 23/234 (9%), Positives = 61/234 (26%), Gaps = 38/234 (16%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPK---FVWKKDGNIIGSGGRRKIFEN 141
+ + + + AG+G T+ P P + W KD +
Sbjct: 1 MAFTVSIQSNKRCFLAGDG--FTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------T 51
Query: 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG--PSYYEQLPPKITIAAHRNLQ 199
L ++ + +++G Y T + M + + ++ P +++ +++
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Query: 200 LRCSAHT------EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADA 253
L + + ++ Y W+ I + I +
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDT--------------TQDITIQEFTADKN 157
Query: 254 GEYECVVKSTVGKISTKTTVIVEGPP---GLPGGVQVVEVHKTSATIQWTDGAT 304
G Y V + + + ++ +
Sbjct: 158 GVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSED 211
Score = 66.0 bits (160), Expect = 5e-12
Identities = 25/195 (12%), Positives = 68/195 (34%), Gaps = 43/195 (22%)
Query: 3 NQADLTWTCEAFG------VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLN 56
+L T + G ++ YSW + +++++ +TI+
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ--------------DITIQEFT 153
Query: 57 PERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC----- 111
+ +Y + + + +SA +++ + + +ES+T G +++
Sbjct: 154 AD-KNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKT-VALGNEISLNYVVSED 211
Query: 112 -----NPEAAPKPKFVW--KKDGNII---------GSGGRRKIFENGNLLISPVSRDDSG 155
+ K+ W +++G + + I +G+L + DD+
Sbjct: 212 IVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTA 271
Query: 156 IYSCTATNVHGMDES 170
+ C A +++
Sbjct: 272 KFWCVAKLYQQIEDE 286
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 98.2 bits (245), Expect = 9e-25
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 13/126 (10%)
Query: 265 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNST 323
G + + PG P V++ +V + + WT +G IT Y I +
Sbjct: 4 GSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
WF V EH R A+I LV + Y F+V + N G E ++ + + A
Sbjct: 64 WFTVIEHY---------HRTSATITE-LVIGNEYYFRVFSENMCGLSEDATMTKESAVIA 113
Query: 384 --DKPY 387
K Y
Sbjct: 114 RDGKIY 119
Score = 32.7 bits (75), Expect = 0.073
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
++++W P P++ NA Y I K E+ T+ E+ + A + + E
Sbjct: 34 VALTWTP-PKDDGNAAITGYTIQKADKKSMEWF--TVIEHYHRTSATITELVI----GNE 86
Query: 461 YEVKVQAINDVGPGPESEV 479
Y +V + N G ++ +
Sbjct: 87 YYFRVFSENMCGLSEDATM 105
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 97.0 bits (242), Expect = 2e-24
Identities = 32/115 (27%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P P + V E TS T+ W G N P+T+Y I R F + V
Sbjct: 4 GSSGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQEVDGVATT 61
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 389
SI L P+S Y F+V+A N +G G PS P
Sbjct: 62 R---------YSIGG-LSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGPSSG 106
Score = 40.4 bits (95), Expect = 1e-04
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 22/87 (25%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
++++W+ + P YY I +R E V + + Y
Sbjct: 24 VTLTWDS----GNSEPVTYYGIQYRAAGTEGPFQE-----------VDGVATTRYSIGGL 68
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
++EY +V A+N +G GP SE V
Sbjct: 69 SPFSEYAFRVLAVNSIGRGPPSEAVRA 95
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 105 bits (262), Expect = 3e-24
Identities = 51/334 (15%), Positives = 95/334 (28%), Gaps = 44/334 (13%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELL-----NSETLPLEDQDRYFIQDN-------VLTIRY 54
+ + + + G +S + R + + I
Sbjct: 132 INCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ 191
Query: 55 LNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLE-----SETYAGEGGNVTI 109
L D Y C+A + + +A L+VL +P L E NV
Sbjct: 192 LRLS-DAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAK 250
Query: 110 F-CNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGN-----LLISPVSRDDSGIYSCTAT 162
F C + V G GR + ++I+ + ++D+G Y C A
Sbjct: 251 FLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAH 310
Query: 163 NVHGMDESKGRLIVLH---GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHN 219
+ + E S + P + A ++ + C + +E + Y W
Sbjct: 311 SDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY-WCLW 369
Query: 220 GVRIGNMDLNELET---------------PNINIDGGLLEITNASFADAGEYECVVKSTV 264
+++ + + + DAG Y C+
Sbjct: 370 EGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDT 429
Query: 265 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ 298
+T I+EG P L V V + +
Sbjct: 430 LWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVP 463
Score = 99.3 bits (246), Expect = 2e-22
Identities = 47/327 (14%), Positives = 88/327 (26%), Gaps = 48/327 (14%)
Query: 9 WTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN------VLTIRYLNPERDPA 62
+ C + G+ + R + + I L E D
Sbjct: 251 FLCRQSSGENCDVVVNTLGKRA------PAFEGRILLNPQDKDGSFSVVITGLRKE-DAG 303
Query: 63 MYQCRAKNQLKTRYSSAQL-RVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
Y C A + + + S L + + G +V + C
Sbjct: 304 RYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSI 363
Query: 122 VW--KKDGNIIGSG---------------GRRKIFENGN-----LLISPVSRDDSGIYSC 159
+ +G G GR + E ++++ ++ D+G Y C
Sbjct: 364 KYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWC 423
Query: 160 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY--IWT 217
+ I + ++P +T L++ C + Y W
Sbjct: 424 LTNGDTLWRTTVE--IKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWN 481
Query: 218 HNGVRIGNMDLNELETPNINIDGGL----LEITNASFADAGEYECVVKS-TVGKISTKTT 272
+ G + +N D L + + AD G Y C VK +
Sbjct: 482 NTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVY 541
Query: 273 VIV-EGPPGLPGGVQVVEVHKTSATIQ 298
V V E V + + +A +
Sbjct: 542 VAVEERKAAGSRDVSLAKA--DAAPDE 566
Score = 88.9 bits (219), Expect = 6e-19
Identities = 52/303 (17%), Positives = 85/303 (28%), Gaps = 50/303 (16%)
Query: 7 LTWTC---EAFGVPDVTYSWFRNGELLNSETL-------PLEDQDRYFIQDN------VL 50
++ TC W R G TL + R + + V+
Sbjct: 18 VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVV 77
Query: 51 TIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF 110
I L+ + D Y+C + ++ P G VTI
Sbjct: 78 NIAQLSQD-DSGRYKCGLGINSRGLSFDVS-LEVSQGPGLLNDT--KVYTVDLGRTVTIN 133
Query: 111 CNPEAA--PKPKFVWKKDGNII------------GSGGRRKIFENG------NLLISPVS 150
C + K K ++K+ G GR ++ G +++I+ +
Sbjct: 134 CPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR 193
Query: 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQ--------LPPKITIAAHRNLQLRC 202
D+G Y C A + ++ L VL + + C
Sbjct: 194 LSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLC 253
Query: 203 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 262
+ E DV + G R + L P + IT DAG Y C S
Sbjct: 254 RQSSGENCDV--VVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHS 311
Query: 263 TVG 265
Sbjct: 312 DGQ 314
Score = 65.8 bits (159), Expect = 1e-11
Identities = 39/225 (17%), Positives = 66/225 (29%), Gaps = 35/225 (15%)
Query: 97 SETYAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIG--------------SGGRRKIF 139
E + EG +V+I C + W + G G GR +
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 140 ENGN-----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 194
+ I+ +S+DDSG Y C S + + T+
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRYKCGLGINSR-GLSFDVSLEVSQGPGLLNDTKVYTVDL 126
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-DLNELETPN------INIDGG-----L 242
R + + C TE ++ G+ + D + PN ++I G
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS 186
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 287
+ I +DAG+Y C + V P +
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231
Score = 64.6 bits (156), Expect = 3e-11
Identities = 25/206 (12%), Positives = 52/206 (25%), Gaps = 36/206 (17%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELL----------NSETLPLEDQDRYFIQDN------VL 50
+ C + ++ E + + + + R + + +
Sbjct: 349 VAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTV 408
Query: 51 TIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIF 110
+ L D Y C R + + + + A G + +
Sbjct: 409 ILNQLTSR-DAGFYWCLTNGDTLWRTT----VEIKIIEGEPNLKVPGNVTAVLGETLKVP 463
Query: 111 CNPEAA----PKPKFVWKKDGNII------GSGGRRKIFENGN----LLISPVSRDDSGI 156
C+ K W G G + + L ++ V+R D G
Sbjct: 464 CHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW 523
Query: 157 YSCTATNVHGMDES-KGRLIVLHGPS 181
Y C H E+ + V +
Sbjct: 524 YWCGVKQGHFYGETAAVYVAVEERKA 549
Score = 35.0 bits (79), Expect = 0.068
Identities = 14/71 (19%), Positives = 23/71 (32%)
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD 301
++ I S D+G Y+C + +S ++ V PGL +V V
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCP 135
Query: 302 GATNGRPITHY 312
T
Sbjct: 136 FKTENAQKRKS 146
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 104 bits (259), Expect = 4e-24
Identities = 46/281 (16%), Positives = 70/281 (24%), Gaps = 43/281 (15%)
Query: 6 DLTWTCEAFG---VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
T C G V + + LN D D
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS-------AKASVSVTAEDEG 257
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 122
+ L + V T+ + ++ EG VT+ C K
Sbjct: 258 TQRLTCAVILGNQSQETLQTV-TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLN 316
Query: 123 WKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG----MDESKGRLIVLH 178
+ LL+ D+ +SC+AT L VL+
Sbjct: 317 GVPAQ---------PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY 367
Query: 179 GPSYYE-QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
GP E P T + C A +G
Sbjct: 368 GPRLDERDCPGNWTWPENSQQTPMCQAWGN--PLPELKCLKDG----------------T 409
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
+ E + G Y C +ST G+++ + TV V P
Sbjct: 410 FPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
Score = 84.5 bits (208), Expect = 1e-17
Identities = 41/329 (12%), Positives = 75/329 (22%), Gaps = 42/329 (12%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+ TC + ET PL ++ +N L+ ++ + C
Sbjct: 17 VLVTCSTSCDQPMLLGI---------ET-PLPKKELLLPGNNRKVYE-LSNVQEDSQPMC 65
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA---APKPKFVW 123
+ + L V + PL S G+ N+T+ C E V
Sbjct: 66 YSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK--NLTLRCQVEGGAPRANLTVVL 123
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG--------RLI 175
+ + + +SC + +L
Sbjct: 124 LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQ 183
Query: 176 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETP 234
P+ QL + + CS + A + R+ ++
Sbjct: 184 TFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF 243
Query: 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVH--- 291
+ A C V T TV + P + EV
Sbjct: 244 SAKA----SVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGT 299
Query: 292 ----------KTSATIQWTDGATNGRPIT 310
+ T+ G
Sbjct: 300 EVTVKCEAHPRAKVTLNGVPAQPLGPRAQ 328
Score = 65.3 bits (158), Expect = 1e-11
Identities = 38/309 (12%), Positives = 69/309 (22%), Gaps = 26/309 (8%)
Query: 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKK---DGNIIGSGGRRKIFENGNLLISPVSRDD 153
S+ GG+V + C+ + ++ G RK++E + +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYE-------LSNVQE 59
Query: 154 SGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEE-LLDV 212
C + G +K L V P E P +NL LRC ++
Sbjct: 60 DSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119
Query: 213 AYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTT 272
+ + E + + C + + +
Sbjct: 120 TVVLLRGEKELKR------EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 273 VIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNS--TWFNVSEH 330
P +Q + T + T + S
Sbjct: 174 ENTSAPY----QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGD 229
Query: 331 VIGKEVDRYTGRK---EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
Y +AS+ T E Y+ PA
Sbjct: 230 QRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI 289
Query: 388 QAPSRIGGG 396
+ G
Sbjct: 290 LTKPEVSEG 298
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 97.7 bits (243), Expect = 6e-24
Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 33/186 (17%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSE-------TLPLEDQDRYFIQ-------DNVLT 51
+ TC A + + W + ++ P + DR + + L
Sbjct: 12 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 71
Query: 52 IRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC 111
I+ L E D Y C ++Q + QL V L + S+T+ +G ++T+
Sbjct: 72 IKNLKIE-DSDTYICEVEDQKEE----VQLLVFGLTAN-------SDTHLLQGQSLTLTL 119
Query: 112 NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
P + + I L +S + DSG ++CT E K
Sbjct: 120 ESPPGSSPSVQCRSPRG-------KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172
Query: 172 GRLIVL 177
++VL
Sbjct: 173 IDIVVL 178
Score = 89.3 bits (221), Expect = 6e-21
Identities = 27/200 (13%), Positives = 48/200 (24%), Gaps = 44/200 (22%)
Query: 100 YAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE------------------- 140
+G V + C +F WK I G +
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 141 -NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQ 199
N L+I + +DS Y C + + + + ++L
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA---------NSDTHLLQGQSLT 116
Query: 200 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 259
L + V G L ++ D+G + C
Sbjct: 117 LTLESPPGSSPSV--QCRSPR-------------GKNIQGGKTLSVSQLELQDSGTWTCT 161
Query: 260 VKSTVGKISTKTTVIVEGPP 279
V K+ K ++V
Sbjct: 162 VLQNQKKVEFKIDIVVLAFQ 181
Score = 54.6 bits (131), Expect = 6e-09
Identities = 11/84 (13%), Positives = 20/84 (23%), Gaps = 14/84 (16%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
LT T E+ + L++ L + D +
Sbjct: 114 SLTLTLESPPGSSPSVQCRSPRGKNIQG-------------GKTLSVSQLELQ-DSGTWT 159
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPS 89
C K + VL + +
Sbjct: 160 CTVLQNQKKVEFKIDIVVLAFQKA 183
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 95.1 bits (237), Expect = 1e-23
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 263 TVGKISTKTTVIVEGPPGLPGG--VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 320
+ G + V P P + V + + + WT P+ Y + N
Sbjct: 2 SSGSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSEN- 60
Query: 321 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 380
N+ W + V K +++ LVP +Y+F++ A N++G G+ S + + +
Sbjct: 61 NAPWTVLLASVDPKAT-------SVTVKG-LVPARSYQFRLCAVNDVGKGQFSKDTERVS 112
Query: 381 TPADKP 386
P P
Sbjct: 113 LPESGP 118
Score = 37.0 bits (86), Expect = 0.003
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 384 DKPYQAPSRIGGGGGKIGDLSI--SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE 441
P AP + +I +W P + N+P I Y + +N+ +
Sbjct: 16 QLP-HAPEHPVATLSTVERRAINLTWTK-PFDG-NSPLIRYILE-MSENNAPWTVLLASV 71
Query: 442 YGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
V+ +P Y+ ++ A+NDVG G S+
Sbjct: 72 DPKATSVTVKGLVP----ARSYQFRLCAVNDVGKGQFSKDTER 110
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 97.1 bits (241), Expect = 2e-23
Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
Query: 47 DNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGN 106
D + + L D YQC+ K L VL KPS + ++ G +
Sbjct: 83 DASINVTNLQLS-DIGTYQCKVKKAPGVANKKFLLTVLV-KPSGTRCFVDGSEE--IGND 138
Query: 107 VTIFCNPEA-APKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNV 164
+ C P+ + +F W+K + + + + S + SG YSCT N
Sbjct: 139 FKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNR 198
Query: 165 HGMDESKGRLIVLHGPS 181
G D+ RL V+ PS
Sbjct: 199 VGSDQCMLRLDVVP-PS 214
Score = 90.5 bits (224), Expect = 5e-21
Identities = 35/214 (16%), Positives = 61/214 (28%), Gaps = 38/214 (17%)
Query: 96 ESETYAGEGGNVTIFC----NPEAAPKPKFVWKKDGNIIGSG------------------ 133
E +G + C +PE W +
Sbjct: 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYP 66
Query: 134 ---GRRKIFE------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE 184
GR + ++ ++ + D G Y C G+ K L VL PS
Sbjct: 67 DLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG-T 125
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLE 244
+ + + +L+C E L + + W + ++
Sbjct: 126 RCFVDGSEEIGNDFKLKCEP-KEGSLPLQFEWQKLSD-----SQTMPTPWLAEMTSPVIS 179
Query: 245 ITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
+ NAS +G Y C V++ VG + V P
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213
Score = 49.3 bits (117), Expect = 7e-07
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 289
+ ++ + +TN +D G Y+C VK G + K + V P
Sbjct: 73 HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGS 132
Query: 290 VHKTSATIQWTDGATNGRPITHYK 313
+ + G ++
Sbjct: 133 EEIGN-DFKLKCEPKEGSLPLQFE 155
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 93.6 bits (233), Expect = 3e-23
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFN 326
S+ + PG P QV +V K S T+ W G P + Y I + +++W
Sbjct: 5 SSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQT 64
Query: 327 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
V+ HV + YT + L P + Y F V A N G +PS S T P
Sbjct: 65 VANHV---KTTLYT------VRG-LRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114
Score = 37.7 bits (88), Expect = 0.001
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 33/123 (26%)
Query: 370 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKI 424
G S Y +D P PS+ ++ D++ +SW+P P Y I
Sbjct: 1 GSSGSSGKNY-DLSDLP-GPPSKP-----QVTDVTKNSVTLSWQPGTPG--TLPASAYII 51
Query: 425 -FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPE 476
+ + +Q+ + + Y T Y V+AIN G
Sbjct: 52 EAFSQSVSNSWQT-----------VANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDP 100
Query: 477 SEV 479
S +
Sbjct: 101 SPM 103
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 94.1 bits (234), Expect = 9e-23
Identities = 32/167 (19%), Positives = 52/167 (31%), Gaps = 27/167 (16%)
Query: 7 LTWTCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T TC+ P+ + WF NG L+ + T P D Y
Sbjct: 22 VTLTCQGARSPESDSIQWFHNGNLIPTHTQPS----------YRFKAN----NNDSGEYT 67
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWK 124
C+ + L VL + + P EG + + C+ P K +
Sbjct: 68 CQTGQT--SLSDPVHLTVLF-EWLVLQTP---HLEFQEGETIMLRCHSWKDKPLVKVTFF 121
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
++G + I + SG Y CT + + SK
Sbjct: 122 QNGKSQKFSH-----LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSK 163
Score = 86.8 bits (215), Expect = 3e-20
Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 33/195 (16%)
Query: 83 VLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFEN 141
VL L+P + +VT+ C +P+ W +GN+I +
Sbjct: 6 VLKLEPP--------WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT-------HT 50
Query: 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLR 201
+ +DSG Y+C D L VL + P + + LR
Sbjct: 51 QPSYRFKANNNDSGEYTCQTGQTSLSDPV--HLTVLFEWLVLQ--TPHLEFQEGETIMLR 106
Query: 202 CSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 261
C + ++ L V + NG I A+ + +G+Y C
Sbjct: 107 CHSWKDKPL-VKVTFFQNGKSQKFSH-----------LDPTFSIPQANHSHSGDYHCTGN 154
Query: 262 STVGKISTKT-TVIV 275
S+K T+ V
Sbjct: 155 IGYTLFSSKPVTITV 169
Score = 42.1 bits (99), Expect = 1e-04
Identities = 19/93 (20%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
PP I + ++ L C + W HNG I
Sbjct: 11 PPWINVLQEDSVTLTCQG-ARSPESDSIQWFHNGNLIPT-------------HTQPSYRF 56
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
A+ D+GEY C T +S + V
Sbjct: 57 KANNNDSGEYTCQTGQTS--LSDPVHLTVLFEW 87
Score = 39.8 bits (93), Expect = 7e-04
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 13/75 (17%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+ C ++ P V ++F+NG+ ++ D +I N Y
Sbjct: 102 TIMLRCHSWKDKPLVKVTFFQNGKSQ-----------KFSHLDPTFSIPQANHS-HSGDY 149
Query: 65 QCRAKNQLKTRYSSA 79
C S
Sbjct: 150 HCTGNIGYTLFSSKP 164
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 93.6 bits (232), Expect = 2e-22
Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 30/184 (16%)
Query: 6 DLTWTCEAFG--VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
+ TC + W + G +L + LP + + +
Sbjct: 15 KILLTCSLNDSATEVTGHRWLKGGVVLKEDALP----------GQKTEFKVDSDD-QWGE 63
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFV 122
Y C + +A +++ P K S + EG + C E+ P +
Sbjct: 64 YSCVFLPE---PMGTANIQLHG-PPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWA 117
Query: 123 WKKDGNII------GSGGRRKIFENGN---LLISPVSR-DDSGIYSCTATNVHGMDESKG 172
W K + GS R + + L I ++ D G Y C T+ G D++
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAII 177
Query: 173 RLIV 176
L V
Sbjct: 178 TLRV 181
Score = 89.3 bits (221), Expect = 7e-21
Identities = 34/183 (18%), Positives = 54/183 (29%), Gaps = 15/183 (8%)
Query: 99 TYAGEGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGI 156
T G + + C+ + W K G ++ S D G
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA----LPGQKTEFKVDSDDQWGE 63
Query: 157 YSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIW 216
YSC + I LHGP + + I L C + + + + W
Sbjct: 64 YSCVFLPEPMGTAN----IQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPV-TDWAW 118
Query: 217 THNGVRIGNMDLNELE---TPNINIDGGLLEITNASFA-DAGEYECVVKSTVGKISTKTT 272
+N E + + L I N + D G+Y C S+ G T
Sbjct: 119 YKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIIT 178
Query: 273 VIV 275
+ V
Sbjct: 179 LRV 181
Score = 56.6 bits (136), Expect = 1e-09
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 6 DLTWTCEAFGVPDVT-YSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERD 60
C++ VP VT ++W++ + + L + R+F+ + L I LN E D
Sbjct: 100 TAMLVCKSESVPPVTDWAWYKITDS-EDKALMNGSESRFFVSSSQGRSELHIENLNMEAD 158
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLT 85
P Y+C + + + LRV +
Sbjct: 159 PGQYRCNGTSSKGSDQAIITLRVRS 183
Score = 53.9 bits (129), Expect = 1e-08
Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 43/189 (22%)
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
+ L CS + + W GV + + G E S GEY
Sbjct: 15 KILLTCSLNDSATEVTGHRWLKGGVVL----------KEDALPGQKTEFKVDSDDQWGEY 64
Query: 257 ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGAT-----NGRPITH 311
CV + + + + GPP V+ K+S I + A P
Sbjct: 65 SCVF---LPEPMGTANIQLHGPP-------RVKAVKSSEHINEGETAMLVCKSESVPPV- 113
Query: 312 YKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS---------IENVLVPWSTYEFKVI 362
T+W W+ +++ ++ R S IEN+ + +++
Sbjct: 114 ------TDW--AWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCN 165
Query: 363 AGNELGYGE 371
+ G +
Sbjct: 166 GTSSKGSDQ 174
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 90.1 bits (224), Expect = 4e-22
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
P F + P G + C P P VW+K G + + R +G
Sbjct: 13 PPCFLRFP--RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHG 70
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
LL++ D+G+Y C A N G + + VL P
Sbjct: 71 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 53.9 bits (130), Expect = 2e-09
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL 242
+ P + + + +L+C E V +W G ++ + ++ DG
Sbjct: 18 RFPRPVRVVSGAEAELKCVVLGEPPPVV--VWEKGGQQLA-------ASERLSFPADGAE 68
Query: 243 --LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L +T A DAG Y C ++ G+ V V PP
Sbjct: 69 HGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 51.6 bits (124), Expect = 2e-08
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ C G P W + G+ L +R + L + P D
Sbjct: 30 EAELKCVVLGEPPPVVVWEKGGQ-------QLAASERLSFPADGAEHGLLLTAALPT-DA 81
Query: 62 AMYQCRAKNQLKTRYSSAQLRVL 84
+Y CRA+N Y++A + VL
Sbjct: 82 GVYVCRARNAAGEAYAAAAVTVL 104
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 90.2 bits (224), Expect = 5e-22
Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 12/123 (9%)
Query: 265 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW 324
G + + P +P ++ K S T+QW + NG I ++ + +
Sbjct: 4 GSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGE 63
Query: 325 FNVSEHVIGKEVDRYTGR-KEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
F Y G K+ I L P +F++ A N+ G S Y +
Sbjct: 64 F----------CQCYMGSQKQFKITK-LSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112
Query: 384 DKP 386
P
Sbjct: 113 SGP 115
Score = 42.0 bits (99), Expect = 5e-05
Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 32/127 (25%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGD-----LSISWEPLPREKQNAPNIYY 422
G S T + +P P+ +I + L++ W+ + +
Sbjct: 1 GSSGSSGAEIFT-TLSCEP-DIPNPP-----RIANRTKNSLTLQWKA--PSDNGSKIQNF 51
Query: 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGP 475
+ W + + + + + ++ A ND G
Sbjct: 52 VLEWDEGKGNGEFCQ-----------CYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSG 100
Query: 476 ESEVVTI 482
SE V
Sbjct: 101 FSEEVLY 107
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 89.8 bits (223), Expect = 5e-22
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGNLL 145
P + P + G + C P P W K+G G R I E G L
Sbjct: 8 PPIILQGP--ANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
I + D+G Y+C AT+ G L V
Sbjct: 66 IKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 59.7 bits (145), Expect = 2e-11
Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQC 66
C+A G P SW + G R IQ+ L I+ L D Y C
Sbjct: 27 LLKCKATGDPLPVISWLKEGFTFPGRD------PRATIQEQGTLQIKNLRIS-DTGTYTC 79
Query: 67 RAKNQLKTRYSSAQLRVL 84
A + SA L V
Sbjct: 80 VATSSSGETSWSAVLDVT 97
Score = 49.7 bits (119), Expect = 7e-08
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
GP Q P T+A L+C A + L ++ W G P
Sbjct: 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVIS--WLKEGFTF------PGRDPRAT 57
Query: 238 I-DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
I + G L+I N +D G Y CV S+ G+ S + V
Sbjct: 58 IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 89.8 bits (223), Expect = 7e-22
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGN-- 143
P F +P EG +V + C A P PK WK++ ++ + R ++++
Sbjct: 15 APMFIYKP--QSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR 72
Query: 144 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 192
LLI V++ D+G Y+ +A N G+ RL V P T+
Sbjct: 73 VTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV--------TARPNQTL 115
Score = 54.7 bits (132), Expect = 2e-09
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 274
W N + + + + N L I + + DAG Y + G + T +
Sbjct: 48 FWKRNNEMV-QFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD 106
Query: 275 VEGPP 279
V P
Sbjct: 107 VTARP 111
Score = 54.3 bits (131), Expect = 2e-09
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERDPA 62
C+ +P W RN E++ + DR + + L I+ +N + D
Sbjct: 34 KLECQISAIPPPKLFWKRNNEMVQ------FNTDRISLYQDNTGRVTLLIKDVNKK-DAG 86
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSF 90
Y A N+ + +L V +P+
Sbjct: 87 WYTVSAVNEAGVTTCNTRLDVTA-RPNQ 113
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 90.7 bits (225), Expect = 9e-22
Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 8/134 (5%)
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
+ + +N+ A+ + KP F K + EG C E P P+
Sbjct: 17 PINANKVENEDAFLEEVAEEKPHV-KPYFTKTI--LDMEVVEGSAARFDCKVEGYPDPEV 73
Query: 122 VWKKDGNIIGSGGRRKIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+W KD N + +I + L IS V DD Y+C A N G L+V
Sbjct: 74 MWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV- 132
Query: 178 HGPSYYEQLPPKIT 191
+ +
Sbjct: 133 ETMGKEGEGEGEGE 146
Score = 59.5 bits (144), Expect = 8e-11
Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 16/143 (11%)
Query: 146 ISPVS-RDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPK-------ITIAAHRN 197
IS +S R SG + N + ++ L + + P + +
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEK--PHVKPYFTKTILDMEVVEGSA 58
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL-LEITNASFADAGEY 256
+ C +V +W + + +++ + +G L I+ D +Y
Sbjct: 59 ARFDCKVEGYPDPEV--MWFKDDNPVKESRHFQIDY---DEEGNCSLTISEVCGDDDAKY 113
Query: 257 ECVVKSTVGKISTKTTVIVEGPP 279
C +++G+ + ++VE
Sbjct: 114 TCKAVNSLGEATCTAELLVETMG 136
Score = 55.6 bits (134), Expect = 2e-09
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
+ C+ G PD WF++ P+++ + I + LTI + + D
Sbjct: 58 AARFDCKVEGYPDPEVMWFKDDN-------PVKESRHFQIDYDEEGNCSLTISEVCGD-D 109
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESE 98
A Y C+A N L +A+L V T+ + E E
Sbjct: 110 DAKYTCKAVNSLGEATCTAELLVETM-GKEGEGEGEGE 146
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 92.9 bits (231), Expect = 9e-22
Identities = 42/211 (19%), Positives = 64/211 (30%), Gaps = 29/211 (13%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
G P W +G+ Y++ +S +
Sbjct: 5 DLGAPQNPNAKAAGSRKIHFNWL--PPSGK-PMGYRVKYWIQGDSES---------EAHL 52
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 397
+ + N L P+ YE KV A G G SS T + P P R+
Sbjct: 53 LDSKVPSVELTN-LYPYCDYEMKVCAYGAQGEGPYSSLVSCR-THQEVP-SEPGRL---- 105
Query: 398 GKIGDLS-----ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAV--V 450
+S +SW P E N Y++ + ND +K+ +
Sbjct: 106 -AFNVVSSTVTQLSWAE-PAE-TNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRML 162
Query: 451 RIPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
I + Y V+A N G GPE E +
Sbjct: 163 LIENLRESQPYRYTVKARNGAGWGPEREAII 193
Score = 64.8 bits (158), Expect = 4e-12
Identities = 25/140 (17%), Positives = 41/140 (29%), Gaps = 6/140 (4%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
+ P PG + V T + W + A IT Y++ + + +
Sbjct: 96 QEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD 155
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGG 395
+ IEN L Y + V A N G+G T +P P
Sbjct: 156 NPKNR---MLLIEN-LRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDI 211
Query: 396 GGGKI--GDLSISWEPLPRE 413
G+ S+ +
Sbjct: 212 PIVDAQSGEDYDSFLMYSDD 231
Score = 59.0 bits (143), Expect = 4e-10
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
Query: 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 443
AP + +W P + + Y++ + + D+E ++ L
Sbjct: 3 HMDLGAPQNPNAKAAGSRKIHFNWLP-----PSGKPMGYRVKYWIQGDSESEAHLLD--S 55
Query: 444 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
V + P Y +YE+KV A G GP S +V+
Sbjct: 56 KVPSVELTNLYP----YCDYEMKVCAYGAQGEGPYSSLVSC 92
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 88.9 bits (221), Expect = 1e-21
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
KP +T P+P +W KDG I GG+ K+ E+
Sbjct: 6 KPVIVTGL--QDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L I DSG+Y+CT N G S +L +
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 59.2 bits (144), Expect = 3e-11
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ +A G P T W ++G+ + +Y + ++ L I + D
Sbjct: 23 VAKFAVKATGEPRPTAIWTKDGK-------AITQGGKYKLSEDKGGFFLEIHKTDTS-DS 74
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
+Y C KN + SS +L +
Sbjct: 75 GLYTCTVKNSAGSVSSSCKLTI 96
Score = 50.4 bits (121), Expect = 4e-08
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 215 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 270
IWT +G I + + D G LEI +D+G Y C VK++ G +S+
Sbjct: 39 IWTKDGKAIT-------QGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSS 91
Query: 271 TTVIVEG 277
+ ++
Sbjct: 92 CKLTIKA 98
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 89.4 bits (222), Expect = 1e-21
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-GSGGRRKIFENGNLLI 146
P ++ P G + C +P P +W+KDG ++ R K ENG L I
Sbjct: 9 PVIRQGP--VNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
D+G Y+C A+ G + V
Sbjct: 67 RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGV 101
Score = 59.4 bits (144), Expect = 4e-11
Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 9/99 (9%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMY 64
+C A G P T W ++G L+++ R +N VL IRY D Y
Sbjct: 25 TFVLSCVATGSPVPTILWRKDGVLVST------QDSRIKQLENGVLQIRYAKLG-DTGRY 77
Query: 65 QCRAKNQLKTRYSSAQLRVL-TLKPSFKKRPLESETYAG 102
C A SA + V P RP +
Sbjct: 78 TCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPS 116
Score = 54.4 bits (131), Expect = 2e-09
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGL 242
Q P T+A L C A + + +W +GV + + I + G+
Sbjct: 12 RQGPVNQTVAVDGTFVLSCVATGSPVPTI--LWRKDGVLV------STQDSRIKQLENGV 63
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L+I A D G Y C+ + G+ + + V+
Sbjct: 64 LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFG 100
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 94.1 bits (234), Expect = 1e-21
Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 30/220 (13%)
Query: 265 GKISTKTTVIVEGPPGL-PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 323
S+ V+ +GP P ++ +V TS + QWT N +T Y++ +
Sbjct: 6 HHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP--NV-QLTGYRVRVTPKEKTG 62
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
KE++ + L+ + YE V A + P+
Sbjct: 63 PM--------KEINLAPDSSSVVVSG-LMVATKYEVSVYALKDTLTSRPAQGVVTTLENV 113
Query: 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 443
P R ++ISW + +++ N T+K
Sbjct: 114 S----PPRRARVTDATETTITISWRT-----KTETITGFQVDAVPANGQTPIQRTIK--P 162
Query: 444 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
+V + P T+Y++ + +ND +
Sbjct: 163 DVRSYTITGLQP----GTDYKIYLYTLNDNARSSPVVIDA 198
Score = 79.1 bits (195), Expect = 1e-16
Identities = 43/234 (18%), Positives = 72/234 (30%), Gaps = 42/234 (17%)
Query: 255 EYECVVKST----VGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPIT 310
+YE V + + + +E P +V + +T+ TI W IT
Sbjct: 86 KYEVSVYALKDTLTSRPAQGVVTTLENVSP-PRRARVTDATETTITISWR--TKTE-TIT 141
Query: 311 HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG 370
+++ A T + I +V YT I L P + Y+ + N+
Sbjct: 142 GFQVDAVPANGQTPI---QRTIKPDVRSYT------ITG-LQPGTDYKIYLYTLNDNARS 191
Query: 371 EPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKIF 425
P T D APS + + + +SW+P A Y I
Sbjct: 192 SPVVIDAS--TAID----APSNL-----RFLATTPNSLLVSWQPP-----RARITGYIIK 235
Query: 426 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
+ K + G+ I TEY + V A+ +
Sbjct: 236 YEKPGSPP---REVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIG 286
Score = 39.0 bits (91), Expect = 0.003
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 12/82 (14%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
LS W P P N Y++ K T + + + VV + T+
Sbjct: 37 LSAQWTP-P----NVQLTGYRVRVTPKEKTG-PMKEINLAPDSSSVVVSGLMV----ATK 86
Query: 461 YEVKVQAINDVGPGPESEVVTI 482
YEV V A+ D ++ V
Sbjct: 87 YEVSVYALKDTLTSRPAQGVVT 108
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 88.1 bits (219), Expect = 1e-21
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 136
SS + PSF + EG + + C+ P P+ W +G I
Sbjct: 2 SSGSSGMEV-APSFSSVL--KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST 58
Query: 137 KIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L I +D G Y+C A N G + V
Sbjct: 59 CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 60.0 bits (146), Expect = 1e-11
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPAM 63
D C G P +W NG+ + R + V L I+ PE D
Sbjct: 28 DFVLQCSVRGTPVPRITWLLNGQPIQY--------ARSTCEAGVAELHIQDALPE-DHGT 78
Query: 64 YQCRAKNQLKTRYSSAQLRV 83
Y C A+N L SA + V
Sbjct: 79 YTCLAENALGQVSCSAWVTV 98
Score = 48.1 bits (115), Expect = 2e-07
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 215 IWTHNGVRIGNMDLNELETPNINIDG-GLLEITNASFADAGEYECVVKSTVGKISTKTTV 273
W NG I + G L I +A D G Y C+ ++ +G++S V
Sbjct: 44 TWLLNGQPIQ-------YARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96
Query: 274 IV 275
V
Sbjct: 97 TV 98
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 91.0 bits (225), Expect = 3e-21
Identities = 31/193 (16%), Positives = 59/193 (30%), Gaps = 10/193 (5%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 155
ES A G +V++ C+ P F W+ + +G L ++PVS +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 156 IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH-TEELLDVAY 214
Y CTAT E ++ + + ++ + A + + ++CS +
Sbjct: 68 SYLCTATCESRKLEKGIQVEI-YSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEI 126
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG-EYECVVKSTVGK------- 266
+ + + E L D G C K + +
Sbjct: 127 DLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTV 186
Query: 267 ISTKTTVIVEGPP 279
+ V P
Sbjct: 187 RQAVKELQVYISP 199
Score = 75.6 bits (185), Expect = 6e-16
Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 25/198 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
++ TC G +SW + PL + + LT+ ++ + Y
Sbjct: 18 SVSLTCSTTGCESPFFSWRTQID------SPLNGKVTNEGTTSTLTMNPVSFG-NEHSYL 70
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPKFV 122
C A + + Q+ + + + G +T+ C + + +
Sbjct: 71 CTATCESRKLEKGIQVEIYSFPK---DPEIHLSGPLEAGKPITVKCSVADVYPFDRLEID 127
Query: 123 WKKDGNIIGSG-----GRRKIFENGN--LLISPVSRDDSGIYSCTATNVHGMDES--KGR 173
K +++ S RK E + + +PV D + C A +S R
Sbjct: 128 LLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVR 187
Query: 174 LIVLHGPSYYEQLPPKIT 191
V Y PK T
Sbjct: 188 QAVKELQVYI---SPKNT 202
Score = 40.9 bits (95), Expect = 3e-04
Identities = 15/96 (15%), Positives = 23/96 (23%), Gaps = 8/96 (8%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
+ ++ L CS E W +D L +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFF--SWRTQ------IDSPLNGKVTNEGTTSTLTMN 59
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
SF + Y C K+ V + P P
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDP 95
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 87.4 bits (217), Expect = 3e-21
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 136
TL +P EG + C+ + P P W + G ++ + R
Sbjct: 4 HHHHSSKTTLAARILTKP--RSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARH 61
Query: 137 KIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
++ IS V D G YS N G E++ L +
Sbjct: 62 QVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 57.0 bits (138), Expect = 2e-10
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----DNVLTIRYLNPERDP 61
++C+ G P T +W R G+ L R+ + + I + D
Sbjct: 31 SARFSCDTDGEPVPTVTWLRKGQ-------VLSTSARHQVTTTKYKSTFEISSVQAS-DE 82
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y +N + + L +
Sbjct: 83 GNYSVVVENSEGKQEAEFTLTI 104
Score = 53.5 bits (129), Expect = 3e-09
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 185 QLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
L +I T+ + + C E + V W G + +++ T
Sbjct: 12 TLAARILTKPRSMTVYEGESARFSCDTDGEPVPTV--TWLRKGQVLSTSARHQVTTTK-- 67
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
EI++ +D G Y VV+++ GK + T+ ++
Sbjct: 68 -YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 86.6 bits (215), Expect = 6e-21
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---- 143
P+FK + EG +V + + PKP W ++ + RR E
Sbjct: 6 PTFKVSL--MDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L I R D+G Y+C A N +G + + RL V
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 61.5 bits (150), Expect = 4e-12
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
D+ + G P SW RN + + DQ R+ + L I D
Sbjct: 22 DVIMSIRVQGEPKPVVSWLRNRQPVR------PDQRRFAEEAEGGLCRLRILAAERG-DA 74
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y C+A N+ R A+L V
Sbjct: 75 GFYTCKAVNEYGARQCEARLEV 96
Score = 50.4 bits (121), Expect = 3e-08
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 15/102 (14%)
Query: 185 QLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
+ PP ++ +++ + E V W N + E
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVV--SWLRNRQPVRPDQRRFAEEA--- 57
Query: 238 IDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
+GGL L I A DAG Y C + G + + V G
Sbjct: 58 -EGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 89.6 bits (222), Expect = 8e-21
Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 28/178 (15%)
Query: 7 LTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T C+ P D + WF N L++S+ + I + D Y+
Sbjct: 25 VTLKCQGAYSPEDQSTQWFHNESLISSQA-------------SSYFIDAATVD-DSGEYR 70
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP-KFVWK 124
C+ + T QL V + P E + + C+ K +
Sbjct: 71 CQTQL--STLSDPVQLEVHI-GWLLLQAP---RWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPS 181
++G N + I + DSG Y C S+ ++ + G +
Sbjct: 125 QNGKGRKYFH-----HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
Score = 84.5 bits (209), Expect = 5e-19
Identities = 33/182 (18%), Positives = 55/182 (30%), Gaps = 25/182 (13%)
Query: 103 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
E +VT+ C +P+ W + ++I S + + I + DDSG Y C
Sbjct: 21 EKDSVTLKCQGAYSPEDQSTQWFHNESLISS-------QASSYFIDAATVDDSGEYRCQT 73
Query: 162 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221
D +L V G + P+ + LRC + L + NG
Sbjct: 74 QLSTLSDPV--QLEVHIGWLLLQ--APRWVFKEEDPIHLRCHSWKNTAL-HKVTYLQNGK 128
Query: 222 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK-STVGKISTKTTVIVEGPPG 280
I A+ D+G Y C + S + +
Sbjct: 129 GRKYFH-----------HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177
Query: 281 LP 282
+
Sbjct: 178 VS 179
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 88.0 bits (218), Expect = 1e-20
Identities = 29/167 (17%), Positives = 48/167 (28%), Gaps = 27/167 (16%)
Query: 7 LTWTCEAFGVP-DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+T C+ P D + WF N L++S+ + I D Y+
Sbjct: 25 VTLKCQGAYSPEDNSTQWFHNESLISSQA-------------SSYFIDAATVN-DSGEYR 70
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWK 124
C+ T QL V + E + + C+ K +
Sbjct: 71 CQTNL--STLSDPVQLEVHIGWLLLQ----APRWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 125 KDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESK 171
++G N + I + DSG Y C S+
Sbjct: 125 QNGKDRKYFH-----HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE 166
Score = 81.8 bits (202), Expect = 2e-18
Identities = 32/175 (18%), Positives = 54/175 (30%), Gaps = 25/175 (14%)
Query: 103 EGGNVTIFCNPEAAPKP-KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
E +VT+ C +P+ W + ++I S + + I + +DSG Y C
Sbjct: 21 EKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------QASSYFIDAATVNDSGEYRCQT 73
Query: 162 TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221
D +L V G + P+ + LRC + L + NG
Sbjct: 74 NLSTLSDPV--QLEVHIGWLLLQ--APRWVFKEEDPIHLRCHSWKNTALH-KVTYLQNGK 128
Query: 222 RIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIV 275
I A+ D+G Y C + S + +
Sbjct: 129 DRKYFH-----------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Score = 42.6 bits (100), Expect = 6e-05
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 17/128 (13%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
P ++ ++ L+C D + W HN I + I
Sbjct: 14 PQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISS-------------QASSYFID 59
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQ-WTDGATN 305
A+ D+GEY C + S + V L + V + ++ + T
Sbjct: 60 AATVNDSGEYRCQTNLSTL--SDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTA 117
Query: 306 GRPITHYK 313
+T+ +
Sbjct: 118 LHKVTYLQ 125
Score = 36.4 bits (84), Expect = 0.008
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 14/79 (17%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+ C ++ ++ +NG+ +YF ++ I + D Y
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKDR-----------KYFHHNSDFHIPKATLK-DSGSY 152
Query: 65 QCRAKNQLKTRYSSAQLRV 83
CR SS + +
Sbjct: 153 FCRGLVG-SKNVSSETVNI 170
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 86.0 bits (213), Expect = 2e-20
Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII-----GSG 133
LR P + P S+ +G T+ C E P P W K G +
Sbjct: 1 GSLRQEDFPPRIVEHP--SDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPR 58
Query: 134 GRRKIFENGNLLI-----SPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPSYYEQ 185
R + +G+L SR D G+Y C A N G S L V ++
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHH 116
Score = 55.2 bits (133), Expect = 1e-09
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER----DP 61
T C+A G P T W++ GE + ++ R + L + R D
Sbjct: 26 PATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH-RMLLPSGSLFFLRIVHGRKSRPDE 84
Query: 62 AMYQCRAKNQLKTRYS-SAQLRVLTLKPSFKK 92
+Y C A+N L S A L V
Sbjct: 85 GVYVCVARNYLGEAVSHDASLEVAAA-AHHHH 115
Score = 45.2 bits (107), Expect = 4e-06
Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 24/113 (21%)
Query: 184 EQLPPKIT-------IAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNEL 231
E PP+I ++ L C A T W G R+ +
Sbjct: 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPT-------IEWYKGGERVETDKDDPR 58
Query: 232 ETPNINIDGGLL----EITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPP 279
+ G L S D G Y CV ++ +G+ + ++ V
Sbjct: 59 SHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 87.6 bits (217), Expect = 2e-20
Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 36/195 (18%)
Query: 98 ETYAGEGGNVT--IFCNPEAAPKPKFVWKKDGN------------IIGSGGRRKIFENGN 143
ET+ G ++ I + W+K + K+F+NG
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRC 202
L I + DD IY + + G + + + E++ PKI+ N L C
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL----KIQERVSKPKISWTC-INTTLTC 122
Query: 203 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 262
D +G ++ + ++ + + + +++C +
Sbjct: 123 EV--MNGTDPELNLYQDGK-------------HLKLSQRVI-THKWTTSLSAKFKCTAGN 166
Query: 263 TVGKISTKTTVIVEG 277
V K S+ V
Sbjct: 167 KVSKESSVEPVSCPE 181
Score = 79.5 bits (196), Expect = 2e-17
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 25/174 (14%)
Query: 5 ADLTWTCEAFGVPDVTYSWFRNGE-----LLNSETLPLEDQDRYFIQDN-VLTIRYLNPE 58
+L W + + E +++D Y + N L I++L +
Sbjct: 17 INLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTD 76
Query: 59 RDPAMYQCRAKNQLKTRYSSA--QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA 116
D +Y+ + L++ + + N T+ C
Sbjct: 77 -DQDIYKVSIYDTKGKNVLEKIFDLKIQ--------ERVSKPKISWTCINTTLTCEVMNG 127
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDES 170
P+ +DG + + + ++ + S + CTA N + S
Sbjct: 128 TDPELNLYQDG--------KHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESS 173
Score = 50.3 bits (120), Expect = 2e-07
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 15/78 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ T TCE D + +++G+ L + A ++
Sbjct: 117 NTTLTCEVMNGTDPELNLYQDGKHLKL--------------SQRVITHKWTTS-LSAKFK 161
Query: 66 CRAKNQLKTRYSSAQLRV 83
C A N++ S +
Sbjct: 162 CTAGNKVSKESSVEPVSC 179
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 84.7 bits (210), Expect = 4e-20
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+P F + P + EG + C P P W+ DG + K+ N
Sbjct: 9 RPHFLQAP--GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
L+I PV+ D+GIY+C ATN G + L+V S
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
Score = 53.9 bits (130), Expect = 3e-09
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
C+ G+P SW +G+ P+ + + L I + D
Sbjct: 26 LCRMDCKVSGLPTPDLSWQLDGK-------PVRPDSAHKMLVRENGVHSLIIEPVTSR-D 77
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVL 84
+Y C A N+ S +L V
Sbjct: 78 AGIYTCIATNRAGQNSFSLELVVA 101
Score = 53.5 bits (129), Expect = 4e-09
Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 27/120 (22%)
Query: 179 GPSYYEQLPPKI-------TIAAHRNLQLRCSAH---TEELLDVAYIWTHNGVRIGNMDL 228
G S P T+ + ++ C T +L W +G +
Sbjct: 1 GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDL-----SWQLDGKPV----- 50
Query: 229 NELETPNINI---DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 283
+ + G+ L I + DAG Y C+ + G+ S ++V P
Sbjct: 51 --RPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 84.2 bits (208), Expect = 7e-20
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIAR-TNWNSTWFNVSEHV---I 332
G P V + S ++W +G PI +K+ R W ++++
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382
K AS+ + L P TY F+++A + S+ S ++
Sbjct: 61 PKWNSELGKSFTASVTD-LKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109
Score = 38.7 bits (90), Expect = 6e-04
Identities = 9/90 (10%), Positives = 21/90 (23%), Gaps = 14/90 (15%)
Query: 405 ISWEPLPREKQNAPNIYYKIFWRKKND-TEFQSETLKEYGNVGIAVVRIPSEFYY----- 458
+ W P + +K+ +R +Q+ + F
Sbjct: 21 LRWMV--PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDL 78
Query: 459 ---TEYEVKVQAINDVG---PGPESEVVTI 482
Y ++ A+ S +
Sbjct: 79 KPQHTYRFRILAVYSNNDNKESNTSAKFYL 108
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 83.9 bits (208), Expect = 7e-20
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 80 QLRVL-TLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI 138
QL VL + P+ G ++ + C P P+ +W KD + +
Sbjct: 2 QLTVLERVAPTITGNL--ENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 59
Query: 139 FE-NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 191
+ N NL I V ++D G+Y+C A +V G + + I+ + + T
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII--------EGAQEKT 105
Score = 60.4 bits (147), Expect = 1e-11
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPAM 63
+ +C A G P WF++ E L + ++D LTIR + E D +
Sbjct: 27 SIEVSCTASGNPPPQIMWFKDNE-------TLVEDSGIVLKDGNRNLTIRRVRKE-DEGL 78
Query: 64 YQCRAKNQLKTRYSSAQLRV 83
Y C+A + L A +
Sbjct: 79 YTCQACSVLGCAKVEAFFII 98
Score = 58.5 bits (142), Expect = 5e-11
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 184 EQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
E++ P I T + ++++ C+A + +W + + +E I
Sbjct: 7 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI--MWFKDNETL-------VEDSGI 57
Query: 237 NI--DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ L I D G Y C S +G + I+EG
Sbjct: 58 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 85.8 bits (212), Expect = 1e-19
Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 32/189 (16%)
Query: 97 SETYAGEGGNVT--IFCNPEAAPKPKFVWKKDGNIIGS----------GGRRKIFENGNL 144
+ G + I + W++ ++ G +I NG+L
Sbjct: 4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDL 63
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSA 204
I ++RDDSG Y+ T + +G L + E + + N L C
Sbjct: 64 KIKNLTRDDSGTYNVTVYSTNGTRILNKALDL----RILEMVSKPMIYWECSNATLTCEV 119
Query: 205 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 264
E DV + ++ + N ++C + V
Sbjct: 120 --LEGTDVELKLYQGKEHLRSLRQKTMSYQWTN--------------LRAPFKCKAVNRV 163
Query: 265 GKISTKTTV 273
+ S V
Sbjct: 164 SQESEMEVV 172
Score = 71.9 bits (176), Expect = 6e-15
Identities = 25/164 (15%), Positives = 44/164 (26%), Gaps = 21/164 (12%)
Query: 6 DLTWTCEAFGVPDVTYS--WFRNGELL---NSETLPLEDQDRYFIQDN-VLTIRYLNPER 59
+ F + D W R L+ + P + I N L I+ L +
Sbjct: 13 GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRD- 71
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 119
D Y + TR + L + + E N T+ C
Sbjct: 72 DSGTYNVTVYSTNGTRILNKALDLRI------LEMVSKPMIYWECSNATLTCEVLEGTDV 125
Query: 120 KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
+ + + S + +S + + C A N
Sbjct: 126 ELKLYQGKEHLRSLRQ--------KTMSYQWTNLRAPFKCKAVN 161
Score = 45.3 bits (107), Expect = 8e-06
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 15/81 (18%)
Query: 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
++ T TCE DV ++ E L S T+ Y A
Sbjct: 109 ECSNATLTCEVLEGTDVELKLYQGKEHLRS--------------LRQKTMSY-QWTNLRA 153
Query: 63 MYQCRAKNQLKTRYSSAQLRV 83
++C+A N++ +
Sbjct: 154 PFKCKAVNRVSQESEMEVVNC 174
Score = 45.3 bits (107), Expect = 9e-06
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 17/142 (11%)
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRI---GNMDLNELETPNINIDG-GLLEITNASFAD 252
NL + T+++ +V W + L++ I G L+I N + D
Sbjct: 15 NLNIPNFQMTDDIDEV--RWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDD 72
Query: 253 AGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE----------VHKTSATIQWTDG 302
+G Y V ST G + + + + E + T ++ G
Sbjct: 73 SGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQG 132
Query: 303 ATNGRPITHYKI-IARTNWNST 323
+ R + + TN +
Sbjct: 133 KEHLRSLRQKTMSYQWTNLRAP 154
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 83.2 bits (206), Expect = 1e-19
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSGGRRKIFENGN-- 143
P F+ + EG VT C PKPK W KDG I I + +
Sbjct: 8 APFFEMKL--KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 144 --LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L + + DD G Y+ A N G GRL+V
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 54.3 bits (131), Expect = 2e-09
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-----LTIRYLNPERD 60
+T+TC G P WF++G+ ++ D Y IQ ++ L + D
Sbjct: 25 PVTFTCRVAGNPKPKIYWFKDGKQIS------PKSDHYTIQRDLDGTCSLHTTASTLD-D 77
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPS 89
Y A N + +L V +
Sbjct: 78 DGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 53.1 bits (128), Expect = 4e-09
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 274
W +G +I + + L T ++ D G Y + + G+IS ++
Sbjct: 41 YWFKDGKQI-SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
Query: 275 VEGPPGLPG 283
V+ P
Sbjct: 100 VQAVNSGPS 108
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 82.7 bits (205), Expect = 1e-19
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---- 143
P + ++S+T G+G + P P+ W K+G I R + +
Sbjct: 6 PKIFE-RIQSQT-VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L+I V+ +DS A N+ G S L+V
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 55.4 bits (134), Expect = 6e-10
Identities = 20/82 (24%), Positives = 27/82 (32%), Gaps = 11/82 (13%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
D + G PD W++NG + Y+ L IR + E D
Sbjct: 22 DAHFRVRVVGKPDPECEWYKNGVKIE------RSDRIYWYWPEDNVCELVIRDVTGE-DS 74
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
A +A N S A L V
Sbjct: 75 ASIMVKAINIAGETSSHAFLLV 96
Score = 49.2 bits (118), Expect = 8e-08
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTT 272
W NGV+I D P + + L I + + D+ + G+ S+
Sbjct: 38 EWYKNGVKIERSDRIYWYWP----EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAF 93
Query: 273 VIVEG 277
++V+
Sbjct: 94 LLVQA 98
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 82.7 bits (205), Expect = 2e-19
Identities = 22/99 (22%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
P + S G N N ++ P + W +G + +
Sbjct: 8 APRITL-RMRSHR-VPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLT 65
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSY 182
L I DDSG Y TN G L V G Y
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDV-TGGDY 103
Score = 53.8 bits (130), Expect = 2e-09
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 172 GRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 231
G + H P ++ + +N + + ++ +V W HNGV +
Sbjct: 1 GPFTLDHAPRITLRMRS-HRVPCGQNTRFILNVQSKPTAEV--KWYHNGVELQ------- 50
Query: 232 ETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
E+ I+ G+ LEI + D+G Y V + G+ S T+ V G
Sbjct: 51 ESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 53.1 bits (128), Expect = 4e-09
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 12/82 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ + P W+ NG L++ + + L I + + D
Sbjct: 25 NTRFILNVQSKPTAEVKWYHNGV-------ELQESSKIHYTNTSGVLTLEILDCHTD-DS 76
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y+ N A L V
Sbjct: 77 GTYRAVCTNYKGEASDYATLDV 98
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 85.5 bits (211), Expect = 2e-19
Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 28/185 (15%)
Query: 10 TCEAFGV---PDVTYSWFRNGEL--------LNSETLPLEDQDRYFIQ------DNVLTI 52
T V P++ SWF+ G ++ + + +E R F L +
Sbjct: 12 TSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVV 71
Query: 53 RYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN 112
N Y CR K L V+ + + + +T+ C
Sbjct: 72 TAANIS-HDGNYLCRMKLGETEVTKQEHLSVVK-PLTLSVHS--ERSQFPDFSVLTVTCT 127
Query: 113 PEAAPKPKFVWKKDGNIIGS----GGRRKIFENGNLLIS---PVSRDDSGIYSCTATNVH 165
A P P W + + G ++G+L ++ + + +C N
Sbjct: 128 VNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDK 187
Query: 166 GMDES 170
Sbjct: 188 EEAHG 192
Score = 68.1 bits (166), Expect = 2e-13
Identities = 31/194 (15%), Positives = 49/194 (25%), Gaps = 33/194 (17%)
Query: 101 AGEGGNVTIFCNPE---AAPKPKFVWKKDGN-----IIGS------------GGRRKIFE 140
A G VT+ P+ + W K G +IG G I
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 141 NGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN 197
+ N L+++ + G Y C + L V P +
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV-VKPLTLSVHSERSQFPDFSV 121
Query: 198 LQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADA 253
L + C+ + V W G + DG L +
Sbjct: 122 LTVTCTVNAFPHPHV--QWLMPE---GVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH 176
Query: 254 GEYECVVKSTVGKI 267
CV K+ +
Sbjct: 177 LPVTCVGKNDKEEA 190
Score = 44.6 bits (105), Expect = 2e-05
Identities = 13/69 (18%), Positives = 18/69 (26%), Gaps = 6/69 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLN--PERDPA 62
LT TC P W E P + + L++ P+
Sbjct: 121 VLTVTCTVNAFPHPHVQWLMPE---GVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHL 177
Query: 63 MYQCRAKNQ 71
C KN
Sbjct: 178 PVTCVGKND 186
Score = 44.6 bits (105), Expect = 2e-05
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ L +T A+ + G Y C +K +++ + + V P
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPL 105
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 82.0 bits (203), Expect = 4e-19
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 272 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEH 330
+ GP P + V +V T+ T++W G I Y + + W ++
Sbjct: 2 SSGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKE 61
Query: 331 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ + +T +++ L + F+V+ N G EP++
Sbjct: 62 PVERC--GFT------VKD-LPTGARILFRVVGVNIAGRSEPATLL 98
Score = 34.6 bits (80), Expect = 0.015
Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 21/90 (23%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
++ W P P Y + + + E+ + +
Sbjct: 25 TTLKWRP-PDRIGAGGIDGYLVEYCLEGSEEWVP----------ANKEPVERCGFTVKDL 73
Query: 458 --YTEYEVKVQAINDVGPGP---ESEVVTI 482
+V +N G + VTI
Sbjct: 74 PTGARILFRVVGVNIAGRSEPATLLQPVTI 103
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 86.8 bits (215), Expect = 4e-19
Identities = 35/213 (16%), Positives = 54/213 (25%), Gaps = 17/213 (7%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
+ T + P ++WT T + Y + +
Sbjct: 90 AVLTIPACDFQATHPVMDLKAFPKDNMLWVEWT---TPRESVKKYILEWCVLSDKAPCIT 146
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
+ L Y V G G P S P
Sbjct: 147 DWQQEDG------TVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAY--LKQAPPS 198
Query: 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447
+ P+ GK + + W+ LP + QN Y IF+R E +
Sbjct: 199 KGPTVRTKKVGK-NEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNV-----DSSH 252
Query: 448 AVVRIPSEFYYTEYEVKVQAINDVGPGPESEVV 480
+ S T Y V++ A D G E
Sbjct: 253 TEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 285
Score = 82.2 bits (203), Expect = 2e-17
Identities = 28/208 (13%), Positives = 49/208 (23%), Gaps = 28/208 (13%)
Query: 277 GPPGLPGGVQVVEVHK-TSATIQW--TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
P + + + W I Y + T W S N + +
Sbjct: 6 KAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDY-EVTLTRWKSHLQNYTVN--- 61
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 393
A+ V + Y + N +G S + D P
Sbjct: 62 -----------ATKLTVNLTNDRYLATLTVRNLVG---KSDAAVLTIPACDFQATHPVMD 107
Query: 394 GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 453
K L + W Y + W +D T + + + +
Sbjct: 108 LKAFPKDNMLWVEWTT-----PRESVKKYILEWCVLSDKA-PCITDWQQEDGTVHRTYLR 161
Query: 454 SEFY-YTEYEVKVQAINDVGPGPESEVV 480
Y + V + GPG +
Sbjct: 162 GNLAESKCYLITVTPVYADGPGSPESIK 189
Score = 54.8 bits (132), Expect = 2e-08
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+ + W+ LP + N + Y++ + + Q+ T N V + Y
Sbjct: 25 VQLVWKTLPPFEANGKILDYEVTLTR-WKSHLQNYT----VNATKLTVNLT----NDRYL 75
Query: 463 VKVQAINDVGPGPESEVVT 481
+ N VG + +
Sbjct: 76 ATLTVRNLVGKSDAAVLTI 94
Score = 54.4 bits (131), Expect = 3e-08
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 19/134 (14%)
Query: 255 EYECVV----KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR--P 308
Y V G + + + PP V+ +V K A ++W + +
Sbjct: 169 CYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGF 228
Query: 309 ITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELG 368
I +Y I R V+ VD + E ++ + L + Y ++ A + G
Sbjct: 229 IRNYTIFYR-TIIGNETAVN-------VD--SSHTEYTLSS-LTSDTLYMVRMAAYTDEG 277
Query: 369 YGEPSSPSPQYNTP 382
+ P + TP
Sbjct: 278 GKD--GPEFTFTTP 289
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 81.2 bits (201), Expect = 4e-19
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-- 143
LKP + G + + AP P W + + +
Sbjct: 1 LKPKILTAS--RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ R DSG Y N G DE+ +IV
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 48.1 bits (115), Expect = 2e-07
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 186 LPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
L PKI I A L WT ++ +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTA--TWTVGDSGAALAPELLVDAKS--- 55
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
+ +A AD+G Y+ VK+ +G+ VIV+
Sbjct: 56 STTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 44.6 bits (106), Expect = 3e-06
Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 12/82 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ G PD T +W + + D
Sbjct: 19 THNLEVDFIGAPDPTATWTVGDS-------GAALAPELLVDAKSSTTSIFFPSAKRA-DS 70
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y+ + KN+L + ++ V
Sbjct: 71 GNYKLKVKNELGEDEAIFEVIV 92
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 80.8 bits (200), Expect = 6e-19
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---- 143
P F + P EG + P P W +G + S K+ +
Sbjct: 6 PRFIQVP--ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
L+ V D+G Y+C A N G +L VL
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 56.9 bits (138), Expect = 2e-10
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
+ G+P SW+ NG ++ D + + + L + D
Sbjct: 22 FCRMDFKVSGLPAPDVSWYLNGR-------TVQSDDLHKMIVSEKGLHSLIFEVVRAS-D 73
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVL 84
Y C AKN+ + QL VL
Sbjct: 74 AGAYACVAKNRAGEATFTVQLDVL 97
Score = 47.7 bits (114), Expect = 3e-07
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTT 272
W NG + + DL+++ + GL L +DAG Y CV K+ G+ +
Sbjct: 38 SWYLNGRTVQSDDLHKMIVS----EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQ 93
Query: 273 VIVEG 277
+ V
Sbjct: 94 LDVLA 98
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 81.7 bits (202), Expect = 6e-19
Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 10/116 (8%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 136
S + V + + LE EG + T C A W D + +
Sbjct: 3 SGSSGLVQGRRVHIIE-DLEDVD-VQEGSSATFRCRISPANYEPVHWFLDKTPLHANELN 60
Query: 137 KIFENGN----LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 188
+I L + ++ DSG A G + L V PS + + P
Sbjct: 61 EIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGP 112
Score = 61.3 bits (149), Expect = 8e-12
Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 17/94 (18%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-----VLTIRYLNPERD 60
T+ C WF + PL + I VLT+R L + D
Sbjct: 30 SATFRCRISPANYEPVHWFLDKT-------PLHANELNEIDAQPGGYHVLTLRQLALK-D 81
Query: 61 PAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP 94
A +Q +SA LRV F +
Sbjct: 82 SGTIYFEAGDQ----RASAALRVTEKPSVFSRSG 111
Score = 49.3 bits (118), Expect = 1e-07
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Query: 170 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
S +V + + + + + RC V W + + +LN
Sbjct: 3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVH--WFLDKTPLHANELN 60
Query: 230 ELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
E++ GG L + + D+G G + V P
Sbjct: 61 EIDAQ----PGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKP 104
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 85.0 bits (209), Expect = 9e-19
Identities = 31/200 (15%), Positives = 52/200 (26%), Gaps = 38/200 (19%)
Query: 16 VPDVTYSWFRNGELLNSETLPLEDQDRYF-------IQDNVLTIRYLNPERDPAMYQCRA 68
V Y+W G E + + L + +++P+ D Y C+
Sbjct: 51 VFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQ-DGGRYWCQV 109
Query: 69 KN-----QLKTRYSSAQLRVLTLKPSFKKRPLESE-TYAGEGGNVTIFCNPEAAPKPKFV 122
+ S L+V PS +E EG ++T+ C
Sbjct: 110 AQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT 169
Query: 123 WKKDGNIIGSG------------------------GRRKIFENGNLLISPVSRDDSGIYS 158
W + GR NL+I D+G
Sbjct: 170 WYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVW 229
Query: 159 CTATNVHGMDESKGRLIVLH 178
C G ++ +L
Sbjct: 230 CELATGQGELDADRSSTILK 249
Score = 76.1 bits (186), Expect = 9e-16
Identities = 34/241 (14%), Positives = 59/241 (24%), Gaps = 63/241 (26%)
Query: 96 ESETYAGEGGNVTIFCNPEAA---PKPKFVWKKDGNIIGS-------------------- 132
+E GG V + C+ + A P W K + S
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 133 ----------GGRRKIFENGN--LLISPVSRDDSGIYSCTATNVH-----GMDESKGRLI 175
GR + L ++ V D G Y C G+D L
Sbjct: 69 DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128
Query: 176 VLHG---PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE 232
V + + + + ++ + C +V W N + +
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT--WYTGPTFFENYETGTYQ 186
Query: 233 TPNINI------------------DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 274
L I A DAG C + + G++ +
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246
Query: 275 V 275
+
Sbjct: 247 I 247
Score = 43.4 bits (101), Expect = 8e-05
Identities = 14/97 (14%), Positives = 20/97 (20%), Gaps = 19/97 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELL-----------------NSETLPLEDQDRY-FIQD 47
D+T TC + +W+ E R F
Sbjct: 153 DITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGA 212
Query: 48 NVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84
L IR D C + +L
Sbjct: 213 RNLVIRAAKIT-DAGRVWCELATGQGELDADRSSTIL 248
Score = 36.8 bits (84), Expect = 0.011
Identities = 22/144 (15%), Positives = 41/144 (28%), Gaps = 36/144 (25%)
Query: 184 EQLPPKITIAAHRNLQLRCSAHT--------------------EELLDVAYIWTHNGVRI 223
++ + A ++L CS ++ Y W G+
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65
Query: 224 GNMDLNELETPN-------INIDGGLLEITNASFADAGEYECVV-----KSTVGKISTKT 271
D + + N+ L +T+ D G Y C V ++ G +
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
Query: 272 TVIVEG----PPGLPGGVQVVEVH 291
+ V G +VV+V
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVD 149
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 78.7 bits (194), Expect = 3e-18
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA-APKPKFVWKKDGNIIGSGGRRK 137
A L + S++ G +VT C ++ +P VW + N G R
Sbjct: 1 APLAAPSKPIMVTVEEQRSQS-VRPGADVTFICTAKSKSPAYTLVWTRLHN--GKLPSRA 57
Query: 138 IFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ NG L I V D+G Y CT +N+ MD+ L V
Sbjct: 58 MDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 51.0 bits (122), Expect = 2e-08
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
++ ++ C+A ++ +WT N G+L I
Sbjct: 17 QRSQSVRPGADVTFICTAKSKSPA-YTLVWTRLH--------NGKLPSRAMDFNGILTIR 67
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVE 276
N +DAG Y C + T+ V+
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 48.3 bits (115), Expect = 2e-07
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
D+T+ C A P T W R + LP R + +LTIR + P D Y
Sbjct: 27 DVTFICTAKSKSPAYTLVWTRLH----NGKLP----SRAMDFNGILTIRNVQPS-DAGTY 77
Query: 65 QCRAKNQLKTRYSSAQLRV 83
C N +A L V
Sbjct: 78 VCTGSNMFAMDQGTATLHV 96
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 79.3 bits (196), Expect = 4e-18
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 144
P + P + G +V +F W K I K+ + N L
Sbjct: 8 PQIIQFP--EDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
I ++ G Y+ N G +++ L V+ P
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD 102
Score = 56.2 bits (136), Expect = 5e-10
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DG 240
Q P + A +++L + + W +I E+ ++ + +G
Sbjct: 12 QFPEDQKVRAGESVELFGKVTGTQPITC--TWMKFRKQI-------QESEHMKVENSENG 62
Query: 241 GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 284
L I A G Y +V++ +G + + V P P G
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 106
Score = 50.4 bits (121), Expect = 5e-08
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ + G +T +W + + +++ + ++++ LTI E
Sbjct: 24 SVELFGKVTGTQPITCTWMKFRK-------QIQESEHMKVENSENGSKLTILAARQE-HC 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRVL 84
Y +N+L +R + L V+
Sbjct: 76 GCYTLLVENKLGSRQAQVNLTVV 98
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 84.2 bits (207), Expect = 4e-18
Identities = 40/312 (12%), Positives = 84/312 (26%), Gaps = 24/312 (7%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELL---DVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243
+ + C + +W + + ++
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG---GRQQRLSDGTQESII 63
Query: 244 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ-VVEVHKTSATIQWTDG 302
+ + + A + +I + + PP +P + ++ + +S QW G
Sbjct: 64 TLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPG 123
Query: 303 ATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIE-NVLVPWSTYEFKV 361
P + ++ N S + G+ SI L+ + V
Sbjct: 124 PETHLPTSFTLKSFKSRGNCQTQGDSIL----DCVPKDGQSHCSIPRKHLLLYQNMGIWV 179
Query: 362 IAGNELGYG--EPSSPSPQYNTPADKPYQ--APSRIGGGGGKIGDLSISWEPLPREKQNA 417
A N LG P + P + G L +SWEP
Sbjct: 180 QAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQ--PGLH 237
Query: 418 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477
N ++ + + + + + T Y ++++ I PG S
Sbjct: 238 INQKCELRHKPQRGEASWALV--GPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWS 295
Query: 478 EVVTIWHDPLVI 489
+ W L +
Sbjct: 296 D----WSPSLEL 303
Score = 63.8 bits (154), Expect = 3e-11
Identities = 31/306 (10%), Positives = 79/306 (25%), Gaps = 31/306 (10%)
Query: 103 EGGNVTIFC-----NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG---NLLISPVSRDDS 154
G +T C P+P+ +W+ + G ++++ + + + ++ +
Sbjct: 14 LGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQA 73
Query: 155 GIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAY 214
SC+ + + + P + +L + E L ++
Sbjct: 74 F-LSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSF 132
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGL---LEITNASFADAGEYECVVKSTVGKIS--- 268
R + + DG + + ++ +G
Sbjct: 133 TLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQ 192
Query: 269 ---TKTTVIVEGPPGLPGGVQVVEVHK---TSATIQWTDGATNGRPITHYKIIARTNWNS 322
V+ PP L E + W ++ +
Sbjct: 193 LCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGE 252
Query: 323 TWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN-- 380
+ + + + + + + L+P + Y ++ G S SP
Sbjct: 253 ASWALVGPLPLEAL-------QYELCG-LLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 304
Query: 381 TPADKP 386
T
Sbjct: 305 TTERAA 310
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 79.0 bits (195), Expect = 5e-18
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIART----NWNSTWFNVSEH 330
P P + VE + ++A +Q+ + AT G PI YK R W+S W++ E
Sbjct: 5 SSGPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 63
Query: 331 VIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 390
+ +I L P +TY ++ A N G GE S+ S P +P AP
Sbjct: 64 SM---------EGIVTIVG-LKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP-SAP 112
Query: 391 SRIGGGGG 398
G G
Sbjct: 113 KLEGSGPS 120
Score = 46.3 bits (110), Expect = 2e-06
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
+ + P +PS + ++ P P + YK WR + + S+
Sbjct: 3 SGSSGP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+V I T Y V++ A+N G G S
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 101
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 77.7 bits (192), Expect = 7e-18
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 86 LKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSGGRRKIFENGN 143
+ P + P S+ EG +T+ C P P+ W G I GR I +
Sbjct: 4 IPPKIEALP--SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 144 ---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L+I V + D G+Y+ + N G D + + +
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 53.5 bits (129), Expect = 3e-09
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 18/108 (16%)
Query: 179 GPSYYEQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNEL 231
GP +PPKI +I + L + C+ E +V W+ G +I + +
Sbjct: 1 GPG----IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEV--TWSCGGRKIHSQEQGRF 54
Query: 232 ETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
I L L I + D G Y + + G S + +
Sbjct: 55 H---IENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 50.4 bits (121), Expect = 4e-08
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
LT C G P +W G + ++Q R+ I++ L I + + D
Sbjct: 22 VLTVACAFTGEPTPEVTWSCGG-----RKIHSQEQGRFHIENTDDLTTLIIMDVQKQ-DG 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTL 86
+Y N+ + ++ + + ++
Sbjct: 76 GLYTLSLGNEFGSDSATVNIHIRSI 100
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 83.3 bits (205), Expect = 8e-18
Identities = 40/301 (13%), Positives = 89/301 (29%), Gaps = 28/301 (9%)
Query: 186 LPPKITIAAHRNLQLRCSA-----HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
P + H N C + +W N I IN
Sbjct: 10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI-----INRTA 64
Query: 241 GLLEITNASFADAGEY-ECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 299
+ T+ + + + + + T+I PP P + + +W
Sbjct: 65 SSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEW 124
Query: 300 TDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEF 359
G T++ + + + ++ +++ V + E
Sbjct: 125 DGG-RETHLETNFTLKSEWATHKFADCKAKR---------DTPTSCTVDYSTVYFVNIEV 174
Query: 360 KVIAGNELGYGEPSSPS--PQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNA 417
V A N LG + P Y + P+ + L ++W ++
Sbjct: 175 WVEAENALGKVTSDHINFDPVYKVKPNPPHN--LSVINSEELSSILKLTWTNPSI--KSV 230
Query: 418 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPES 477
+ Y I +R K+ + + ++ + + +TEY +++ + + G G S
Sbjct: 231 IILKYNIQYRTKDASTWSQIPPEDT-ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289
Query: 478 E 478
+
Sbjct: 290 D 290
Score = 74.5 bits (182), Expect = 6e-15
Identities = 45/301 (14%), Positives = 87/301 (28%), Gaps = 33/301 (10%)
Query: 103 EGGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSG 155
N T C + VWK + I I + + +
Sbjct: 18 LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNI 77
Query: 156 IYSCTATNVH--GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVA 213
+C + +I P + L + + ++ E L+
Sbjct: 78 QLTCNILTFGQLEQNVYGITIISGLPPEKPKNL--SCIVNEGKKMRCEWDGGRETHLETN 135
Query: 214 YIWT--HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 271
+ + + + +D + N ++ +GK+++
Sbjct: 136 FTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEV------WVEAENALGKVTSDH 189
Query: 272 TVIVEG---PPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFN 326
P P + V E + + WT+ + I Y I RT STW
Sbjct: 190 INFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQ 249
Query: 327 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP--QYNTPAD 384
+ D + R ++++ L P++ Y F++ E G G S S T D
Sbjct: 250 I------PPEDTASTRSSFTVQD-LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 302
Query: 385 K 385
+
Sbjct: 303 R 303
Score = 27.9 bits (61), Expect = 8.6
Identities = 9/84 (10%), Positives = 22/84 (26%), Gaps = 6/84 (7%)
Query: 402 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 461
+ W+ ++ + + + ++ S Y+
Sbjct: 119 KMRCEWDG---GRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDY---STVYFVNI 172
Query: 462 EVKVQAINDVGPGPESEVVTIWHD 485
EV V+A N +G +
Sbjct: 173 EVWVEAENALGKVTSDHINFDPVY 196
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 77.7 bits (192), Expect = 8e-18
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 93 RPLESETYAGEGGNVTIFCNPEAAPKPKFV-WKKDGNIIGSGGRRKIFENGN---LLISP 148
+ EGG+V C E + V W + + + +I L +
Sbjct: 6 GQIMHAV-GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKD 64
Query: 149 VSRDDSGIYSCTATNVHGMDESKGRLIV 176
+++ D G Y C N +G D S L V
Sbjct: 65 ITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 52.3 bits (126), Expect = 7e-09
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 6 DLTWTCEAFGVPDVTY-SWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERD 60
+ + C+ T +W+ LE+ ++Y I +L ++ + D
Sbjct: 18 HVKYVCKIENYDQSTQVTWYFGVR-------QLENSEKYEITYEDGVAILYVKDITKL-D 69
Query: 61 PAMYQCRAKNQLKTRYSSAQLRV 83
Y+C+ N S A+L V
Sbjct: 70 DGTYRCKVVNDYGEDSSYAELFV 92
Score = 51.9 bits (125), Expect = 9e-09
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 215 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 270
W ++ N + I + G+ L + + + D G Y C V + G+ S+
Sbjct: 35 TWYFGVRQLEN-------SEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSY 87
Query: 271 TTVIVEGPP 279
+ V+G
Sbjct: 88 AELFVKGVR 96
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 78.2 bits (193), Expect = 8e-18
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFN 326
P P V V + W A++ Y + +
Sbjct: 7 GEHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERV 66
Query: 327 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ G+ + +I+N L+P + Y F+V+A N+ G GE S+P
Sbjct: 67 ENTSHPGEM--------QVTIQN-LMPATVYIFRVMAQNKHGSGESSAPL 107
Score = 52.0 bits (125), Expect = 1e-08
Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 15/119 (12%)
Query: 370 GEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKI 424
SS T P AP + +S ++W P + N+ Y +
Sbjct: 2 SSGSSGEHAPATTGPLP-SAPRDV-----VASLVSTRFIKLTWRT-PASDPHGDNLTYSV 54
Query: 425 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIW 483
F+ K+ + E + G V I + T Y +V A N G G S + +
Sbjct: 55 FYTKEGIARERVENTS---HPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVE 110
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 77.3 bits (191), Expect = 1e-17
Identities = 24/112 (21%), Positives = 35/112 (31%), Gaps = 15/112 (13%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P QV T A + W +NG +T Y++ +
Sbjct: 5 SSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGV-EGSMQIC-------- 55
Query: 336 VDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
Y G I+ L P +TY +V A + +G G S TP
Sbjct: 56 ---YCGPGLSYEIKG-LSPATTYYCRVQALSVVGAGPFSEVV-ACVTPPSSG 102
Score = 43.8 bits (104), Expect = 8e-06
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 22/87 (25%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
++WE P Y++ W + Q P Y
Sbjct: 24 AQVNWEV-PLS-NGTDVTEYRLEW-GGVEGSMQI------------CYCGPGLSYEIKGL 68
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
T Y +VQA++ VG GP SEVV
Sbjct: 69 SPATTYYCRVQALSVVGAGPFSEVVAC 95
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 77.6 bits (191), Expect = 1e-17
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 12/112 (10%)
Query: 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P P + S + T G PI Y + R+ + + +
Sbjct: 5 SMREPSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKK--VQG 61
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
D +E+ L YE ++ A N LGY EP+ ++ P
Sbjct: 62 NKDHII------LEH-LQWTMGYEVQITAANRLGYSEPTVYE--FSMPPKPN 104
Score = 39.8 bits (93), Expect = 3e-04
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+S ++ AP + Y + +R K+ + E + I + + YE
Sbjct: 24 FKLSITK--QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQW---TMGYE 78
Query: 463 VKVQAINDVGPGPESEV 479
V++ A N +G +
Sbjct: 79 VQITAANRLGYSEPTVY 95
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 83.7 bits (206), Expect = 2e-17
Identities = 46/321 (14%), Positives = 84/321 (26%), Gaps = 33/321 (10%)
Query: 168 DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD 227
D S + I S + P I ++ C + ++ +
Sbjct: 186 DWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQE---------------KVLSAL 230
Query: 228 LNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 287
+ P I++DG + I + + + V T T + PP P +
Sbjct: 231 IGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNC 290
Query: 288 VEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKE 344
W A G T Y ++ + +E +
Sbjct: 291 ETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLF---- 346
Query: 345 ASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS 404
+L Y F + A N LG S + N P+ +
Sbjct: 347 ----QMLPNQEIYNFTLNAHNPLG---RSQSTILVNITEKVYPHTPTSFKVKDINSTAVK 399
Query: 405 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464
+SW N +I +K N + Q + +V + YT Y +
Sbjct: 400 LSWHLPG--NFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFR 457
Query: 465 VQAIND--VGPGPESEVVTIW 483
++ + S
Sbjct: 458 IRCSTETFWKWSKWSNKKQHL 478
Score = 65.6 bits (159), Expect = 1e-11
Identities = 32/283 (11%), Positives = 80/283 (28%), Gaps = 30/283 (10%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
G ++T C + + + +I G + N+ +S S + + T
Sbjct: 212 VGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASS--GTNVVFTTED 269
Query: 163 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS------AHTEELLDVAYIW 216
N+ G Y P ++ H ++ CS +Y
Sbjct: 270 NIFGTV---------IFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTL 320
Query: 217 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV- 275
+ + L + + + +G+ + V +
Sbjct: 321 VE---SFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNIT 377
Query: 276 -EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
+ P P +V +++ T+ + W + +I + + +
Sbjct: 378 EKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVT----- 432
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY--GEPSSP 375
+++ L P++ Y F++ E + + S+
Sbjct: 433 IQGVENSSYLVALDK-LNPYTLYTFRIRCSTETFWKWSKWSNK 474
Score = 41.0 bits (95), Expect = 9e-04
Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 3/101 (2%)
Query: 386 PYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNI-YYKIFWRKKNDTEFQSETLKEYGN 444
P P ++ + ++ SW P P Y + E
Sbjct: 281 PPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRA--EAPT 338
Query: 445 VGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHD 485
+ Y + A N +G + +V I
Sbjct: 339 NESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEK 379
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 77.0 bits (190), Expect = 3e-17
Identities = 30/123 (24%), Positives = 41/123 (33%), Gaps = 6/123 (4%)
Query: 360 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 419
+GN G G + T +D P P + + +SW P P QN
Sbjct: 3 SGSSGNRYGPGVSTDDITVV-TLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61
Query: 420 IYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
YKI RK + ETL ++Y +V A+ G GP S
Sbjct: 62 TGYKIRHRK-TTRRGEMETL----EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW 116
Query: 480 VTI 482
T
Sbjct: 117 YTA 119
Score = 45.8 bits (109), Expect = 2e-06
Identities = 26/101 (25%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P P V + V+ S + W G NG IT YKI R G+
Sbjct: 28 PSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGF-ITGYKIRHRKTTRR----------GE 76
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
L S Y F+V A G G PS+
Sbjct: 77 METLEPNNLWYLFTG-LEKGSQYSFQVSAMTVNGTGPPSNW 116
Score = 34.6 bits (80), Expect = 0.020
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 463 VKVQAINDVGPGPESEVVTIW 483
+ N GPG ++ +T+
Sbjct: 2 SSGSSGNRYGPGVSTDDITVV 22
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 76.2 bits (188), Expect = 3e-17
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVIGK 334
P + V V T+ T++W G + Y + W ++ +I K
Sbjct: 5 SSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDK 64
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
++T I L + +V A N G EP S
Sbjct: 65 T--KFT------ITG-LPTDAKIFVRVKAVNAAGASEPKYYS 97
Score = 35.0 bits (81), Expect = 0.010
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 21/90 (23%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
+++ W P P A Y + + + ++ I +
Sbjct: 24 VTMRWRP-PDHIGAAGLDGYVLEYCFEGTEDWIV----------ANKDLIDKTKFTITGL 72
Query: 458 --YTEYEVKVQAINDVGPGP---ESEVVTI 482
+ V+V+A+N G S+ + +
Sbjct: 73 PTDAKIFVRVKAVNAAGASEPKYYSQPILV 102
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 82.2 bits (203), Expect = 4e-17
Identities = 45/232 (19%), Positives = 73/232 (31%), Gaps = 32/232 (13%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
EY V S ST + P G+ ++ S T+ W A IT Y+
Sbjct: 161 EYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWI--APRA-TITGYR 217
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
I S E + + T + N L P + Y ++A N
Sbjct: 218 IRHHPEHFSGR--PREDRVPHSRNSIT------LTN-LTPGTEYVVSIVALNGREESPLL 268
Query: 374 SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE 433
T +D P + + + ISW+ YY+I + +
Sbjct: 269 IGQQS--TVSDVP-RDLEVVAATPTSL---LISWDA-----PAVTVRYYRITYGETGGNS 317
Query: 434 FQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPES-EVVTI 482
E G+ A + P +Y + V A+ G P S + ++I
Sbjct: 318 PVQEFTVP-GSKSTATISGLKP----GVDYTITVYAVTGRGDSPASSKPISI 364
Score = 78.7 bits (194), Expect = 4e-16
Identities = 32/227 (14%), Positives = 61/227 (26%), Gaps = 30/227 (13%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
EY V + K S + + P ++ + + + W +T++
Sbjct: 70 EYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWA--PPPSIDLTNFL 127
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
+ N E+ + N L+P + Y V + E P
Sbjct: 128 VRYSPVKNEEDV--------AELSISPSDNAVVLTN-LLPGTEYVVSVSSVYEQHESTPL 178
Query: 374 SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE 433
+P+ I ++ W A Y+I ++ +
Sbjct: 179 R------GRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSG 227
Query: 434 FQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESE 478
E + + P TEY V + A+N P
Sbjct: 228 RPREDRVP-HSRNSITLTNLTP----GTEYVVSIVALNGREESPLLI 269
Score = 76.4 bits (188), Expect = 3e-15
Identities = 31/207 (14%), Positives = 59/207 (28%), Gaps = 28/207 (13%)
Query: 278 PPGLPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P P + + T+ W IT Y+I ++ E V +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERS--TTPDITGYRITTTPTNGQQGNSLEEVVHADQ- 57
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 396
+ +N L P Y V + P S + P P+ +
Sbjct: 58 ------SSCTFDN-LSPGLEYNVSVYTVKDDKESVPISDTIIPAVPP------PTDLRFT 104
Query: 397 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPS 454
+ ++W P P + + + + + E +E + V+ +P
Sbjct: 105 NIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNAVVLTNLLP- 158
Query: 455 EFYYTEYEVKVQAINDVGPGPESEVVT 481
TEY V V ++ +
Sbjct: 159 ---GTEYVVSVSSVYEQHESTPLRGRQ 182
Score = 39.8 bits (93), Expect = 0.002
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 10/82 (12%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
L++SWE Y+I N + S + + P E
Sbjct: 19 LTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSP----GLE 70
Query: 461 YEVKVQAINDVGPGPESEVVTI 482
Y V V + D I
Sbjct: 71 YNVSVYTVKDDKESVPISDTII 92
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 76.2 bits (188), Expect = 4e-17
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P PG + + + + T++W T G IT Y + R N W + I +
Sbjct: 10 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILEN- 68
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELG-YGEPSSPS 376
+T + L + YEF+VIA N G PS PS
Sbjct: 69 -EFT------VSG-LTEDAAYEFRVIAKNAAGAISPPSEPS 101
Score = 35.0 bits (81), Expect = 0.011
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 22/91 (24%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
+++ W P Y + R + + I +
Sbjct: 27 VTLKWAK-PEYTGGFKITSYIVEKRDLPNGRWLK----------ANFSNILENEFTVSGL 75
Query: 458 --YTEYEVKVQAINDVG----PGPESEVVTI 482
YE +V A N G P S+ +T
Sbjct: 76 TEDAAYEFRVIAKNAAGAISPPSEPSDAITC 106
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 76.3 bits (188), Expect = 4e-17
Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 9/119 (7%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
P P V V V + W A I + + ++ +
Sbjct: 7 GKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERAL 66
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ G + ++ N L P + Y F+V+A NE G GE S P P P
Sbjct: 67 NTTQPGSL--------QLTVGN-LKPEAMYTFRVVAYNEWGPGESSQPIKVATQPESGP 116
Score = 50.5 bits (121), Expect = 4e-08
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 19/121 (15%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYY 422
G S P + + P AP + +S +SW P + +
Sbjct: 1 GSSGSSGK-PAIPSSSVLP-SAPRDV-----VPVLVSSRFVRLSWRP--PAEAKGNIQTF 51
Query: 423 KIFWRKKNDTEFQSETLKEYGNVGIAVVR-IPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
+F+ ++ D ++ + G++ + V P Y +V A N+ GPG S+ +
Sbjct: 52 TVFFSREGDNRERALNTTQPGSLQLTVGNLKP----EAMYTFRVVAYNEWGPGESSQPIK 107
Query: 482 I 482
+
Sbjct: 108 V 108
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 75.5 bits (186), Expect = 4e-17
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
+ P GG VT+ C A P P+ W KDG + + L++
Sbjct: 10 EVQLVVEP--EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP------SPVLIL 61
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ D G YSC AT+ + + +
Sbjct: 62 PEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 54.0 bits (130), Expect = 2e-09
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69
TCE P W ++G L VL + + P+ D Y C A
Sbjct: 31 TCEVPAQPSPQIHWMKDGVPLPLPP------------SPVLILPEIGPQ-DQGTYSCVAT 77
Query: 70 NQLKTRYSSAQLRVLTLKP 88
+ S + + ++P
Sbjct: 78 HSSHGPQESRAVSISIIEP 96
Score = 45.9 bits (109), Expect = 1e-06
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 16/94 (17%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
P +A + L C + + W +GV + +L +
Sbjct: 17 PEGGAVAPGGTVTLTCEVPAQPSPQI--HWMKDGVPLPLPP------------SPVLILP 62
Query: 247 NASFADAGEYECVVKSTVGKI--STKTTVIVEGP 278
D G Y CV + S ++ + P
Sbjct: 63 EIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 75.9 bits (187), Expect = 5e-17
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 136
+SA L V L F + A EG + C E + W K + G R
Sbjct: 9 TSAMLTVRALPIKFTEGL--RNEEATEGATAVLRC--ELSKMAPVEWWKGHETLRDGDRH 64
Query: 137 KIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
+ ++G L I + +D+G Y C G + + L V PS
Sbjct: 65 SLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPS 108
Score = 53.1 bits (128), Expect = 5e-09
Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 19/121 (15%)
Query: 166 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 225
+ L V P + + LRC W +
Sbjct: 5 SSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSK----MAPVEWWKGHETL-- 58
Query: 226 MDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGL 281
+ ++ DG L+I DAGEY C+ GK T + V P
Sbjct: 59 -----RDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM----CGKERTSAMLTVRAMPSG 109
Query: 282 P 282
P
Sbjct: 110 P 110
Score = 46.6 bits (111), Expect = 1e-06
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 18/91 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
CE + V W++ E L D DR+ ++ + L IR L E D
Sbjct: 36 TAVLRCELSKMAPVE--WWKGHE-------TLRDGDRHSLRQDGARCELQIRGLVAE-DA 85
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKK 92
Y C + +SA L V +
Sbjct: 86 GEYLCMCGKE----RTSAMLTVRAMPSGPSS 112
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 75.5 bits (186), Expect = 5e-17
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLIS 147
S G + + C W +DG + R +I + +
Sbjct: 4 GSSGVEV--ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRI-TGEEVEVQ 59
Query: 148 PVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
DSG+Y+C ++ G D + + V
Sbjct: 60 DSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93
Score = 60.5 bits (147), Expect = 9e-12
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
+ LQLRC + + W +GV++ E+ I G +E+
Sbjct: 10 VESFLVHPGDLLQLRCRLRDDVQ---SINWLRDGVQLA-------ESNRTRITGEEVEVQ 59
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
++ AD+G Y CV S G +T +V V
Sbjct: 60 DSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
Score = 55.9 bits (135), Expect = 4e-10
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L C + +W R+G L + +R I + ++ P D +Y
Sbjct: 20 LLQLRCRLRDDVQ-SINWLRDGV-------QLAESNRTRITGEEVEVQDSVPA-DSGLYA 70
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPS 89
C + + + + V PS
Sbjct: 71 CVTSSPSGSDTTYFSVNVSDALPS 94
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 75.5 bits (186), Expect = 6e-17
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
P +P + + T ++QW+ + T Y + + F
Sbjct: 4 GSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGED 63
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
YT ++N L + Y+FKVIA N G PS ++ T D
Sbjct: 64 L---AYT------VKN-LRRSTKYKFKVIAYNSEGKSNPSEVV-EFTTCPDSGP 106
Score = 36.5 bits (85), Expect = 0.003
Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 19/87 (21%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
LS+ W P + I Y + ++ Y
Sbjct: 24 LSLQWSK-PSGTPSDEGISYILEMEEETSGYGFKP-----------KYDGEDLAYTVKNL 71
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
T+Y+ KV A N G SEVV
Sbjct: 72 RRSTKYKFKVIAYNSEGKSNPSEVVEF 98
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 75.1 bits (185), Expect = 7e-17
Identities = 26/98 (26%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+F K L+ +GG V A PK + W K+G I + G
Sbjct: 7 GAAFAK-ILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
L I+ D Y TA G ++ L V GPS
Sbjct: 65 LFINNCQMTDDSEYYVTA----GDEKCSTELFVRSGPS 98
Score = 52.4 bits (126), Expect = 6e-09
Identities = 18/105 (17%), Positives = 27/105 (25%), Gaps = 18/105 (17%)
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
G ++ + L P + ++ + W NG I +
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADP---KLEVKWYKNGQEIR-------PSTKYIF 56
Query: 239 --DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
G L I N D EY G T + V P
Sbjct: 57 EHKGCQRILFINNCQMTDDSEYYVT----AGDEKCSTELFVRSGP 97
Score = 45.1 bits (107), Expect = 2e-06
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 17/88 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ + E P + W++NG+ + +Y + +L I D
Sbjct: 25 RVRFVVEL-ADPKLEVKWYKNGQ-------EIRPSTKYIFEHKGCQRILFINNCQMT-DD 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPS 89
+ Y A ++ S +L V + S
Sbjct: 76 SEYYVTAGDEK----CSTELFVRSGPSS 99
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 79.5 bits (195), Expect = 8e-17
Identities = 37/246 (15%), Positives = 69/246 (28%), Gaps = 55/246 (22%)
Query: 82 RVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPKFVWKKDGNIIGS------ 132
R L P + G +V + C E + W + +
Sbjct: 1 RSQGL-PGLTVSS--PQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLF 57
Query: 133 ------------GGRRKIF-----ENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
R + +G+LL+ V + D GIY+C + K +
Sbjct: 58 YYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVE 117
Query: 176 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYI-WT---------------HN 219
+ P P + + Q+RCS + E V + W +
Sbjct: 118 LWVLPEE----PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDS 173
Query: 220 GVRIGNMDLNELETPNINIDG------GLLEITNASFADAGEYECVVKSTVGKISTKTTV 273
+R G +++ G G +++ +D G Y C + + +
Sbjct: 174 NMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233
Query: 274 IVEGPP 279
V
Sbjct: 234 HVVQDE 239
Score = 69.9 bits (170), Expect = 1e-13
Identities = 24/226 (10%), Positives = 54/226 (23%), Gaps = 54/226 (23%)
Query: 13 AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ-----------------DNVLTIRYL 55
W + + ++ L + D L ++ +
Sbjct: 32 TEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV 91
Query: 56 NPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEA 115
D +Y C + + ++ + + L + G + C+ ++
Sbjct: 92 QKA-DEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD------LRVRVGDTTQMRCSIQS 144
Query: 116 APKPKFV---WKKDG---------------------NIIGSGGRRKIF------ENGNLL 145
+ + W +G R +G++
Sbjct: 145 TEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIK 204
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 191
+ V D GIY+C+ L V+ P T
Sbjct: 205 LQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPT 250
Score = 49.1 bits (116), Expect = 1e-06
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 18/121 (14%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRIGNMDLNELETPNINIDGGL--- 242
P++ + ++ + C E V + W + + + N+++ G
Sbjct: 12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQN 71
Query: 243 --------------LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVV 288
L + + AD G Y C ++ + K V + P P ++V
Sbjct: 72 RSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVR 131
Query: 289 E 289
Sbjct: 132 V 132
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 81.0 bits (200), Expect = 9e-17
Identities = 32/207 (15%), Positives = 61/207 (29%), Gaps = 28/207 (13%)
Query: 278 PPGLPGGVQVVEV-HKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P P + + T+ W + IT Y+I ++ E V +
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWE--RSTTPDITGYRITTTPTNGQQGNSLEEVVHADQ- 58
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 396
+ +N L P Y V + P S + P + +
Sbjct: 59 ------SSCTFDN-LSPGLEYNVSVYTVKDDKESVPIS----DTIIPEVP--QLTDLSFV 105
Query: 397 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPS 454
+ + W PL ++ I Y+I + E + +VG V P
Sbjct: 106 DITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFEDFVD-SSVGYYTVTGLEP- 159
Query: 455 EFYYTEYEVKVQAINDVGPGPESEVVT 481
+Y++ V + + G + +
Sbjct: 160 ---GIDYDISVITLINGGESAPTTLTQ 183
Score = 80.2 bits (198), Expect = 2e-16
Identities = 35/235 (14%), Positives = 70/235 (29%), Gaps = 38/235 (16%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
+Y+ V + G S TT+ + P ++ + + + W +T++
Sbjct: 162 DYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWA--PPPSIDLTNFL 219
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
+ N V+E I + + N L+P + Y V + E P
Sbjct: 220 VRYSPVKNEED--VAELSISPSDNAVV------LTN-LLPGTEYVVSVSSVYEQHESTPL 270
Query: 374 SPSPQYNTPADKPY------QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
+ T D P + ++ W P A Y+I
Sbjct: 271 RGRQK--TGLDSPTGIDFSDITANSF----------TVHWIA-P----RATITGYRIRHH 313
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
++ + ++ + + + TEY V + A+N P
Sbjct: 314 PEHFSG---RPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS 365
Score = 76.4 bits (188), Expect = 3e-15
Identities = 41/231 (17%), Positives = 73/231 (31%), Gaps = 31/231 (13%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
EY V + K S + + + V++ +S ++WT N I Y+
Sbjct: 71 EYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWT--PLNSSTIIGYR 128
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
I + E + V YT + L P Y+ VI G P+
Sbjct: 129 ITVVAAGEGIP--IFEDFVDSSVGYYT------VTG-LEPGIDYDISVITLINGGESAPT 179
Query: 374 SPSPQYNTPADKPYQ-APSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 432
+ + Q T P + IG + ++W P P + + + + +
Sbjct: 180 TLTQQ--TAVPPPTDLRFTNIGP-----DTMRVTWAPPP----SIDLTNFLVRYSPVKNE 228
Query: 433 EFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
E L + V+ +P TEY V V ++ +
Sbjct: 229 E-DVAELSISPSDNAVVLTNLLP----GTEYVVSVSSVYEQHESTPLRGRQ 274
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 74.7 bits (184), Expect = 1e-16
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 5/114 (4%)
Query: 68 AKNQLKTRYSSAQLRVLTLKPSFKK-RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
+ T +R + P + R L G + + + P+P+ VW K
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Query: 127 GNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
G + R + + + +R DSG Y + + D + R+ V+
Sbjct: 62 GAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
Score = 55.1 bits (133), Expect = 1e-09
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 24/108 (22%)
Query: 187 PPKITIAAH----------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
PPKI + H L L + V +WT G L+T +
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQV--VWTKGGA--------PLDTSRV 70
Query: 237 NI----DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
++ + + A+ +D+GEYE V+ K + + V G
Sbjct: 71 HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKAG 118
Score = 45.8 bits (109), Expect = 2e-06
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L G P W + G L++ + + D D V +R D Y+
Sbjct: 41 QLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSD----FDTVFFVRQAARS-DSGEYE 95
Query: 66 CRAKNQLKTRYSSAQLRVL 84
+ + ++ ++RV+
Sbjct: 96 LSVQIENMKDTATIRIRVV 114
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 81.5 bits (200), Expect = 2e-16
Identities = 30/200 (15%), Positives = 71/200 (35%), Gaps = 12/200 (6%)
Query: 287 VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 346
+ E+ ++S + D N + + + N + + ++ ++
Sbjct: 693 LKELEESSFRKTFEDYLHNV--VFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLV 750
Query: 347 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN---TPADKPYQAPSRIGGGGGKIGDL 403
I L ++ Y ++ A N+ E S + + P K + + +
Sbjct: 751 ISG-LRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVV 809
Query: 404 SISWEPLPREKQNAPNIYYKIFWRKKNDTEFQS-ETLKEYGNVGIAVVRIPSEFYYTEYE 462
+ W+ P ++ N + Y++ +R+ D E +T K + +R Y
Sbjct: 810 HLMWQE-P-KEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLR---GLSPGNYS 864
Query: 463 VKVQAINDVGPGPESEVVTI 482
V+++A + G G +E
Sbjct: 865 VRIRATSLAGNGSWTEPTYF 884
Score = 61.5 bits (148), Expect = 4e-10
Identities = 22/219 (10%), Positives = 55/219 (25%), Gaps = 39/219 (17%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P +P V + ++W + ITHY + + ++
Sbjct: 592 ATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDY----- 646
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN------TPADKPYQA 389
++ + +P T+ + + + + T + +
Sbjct: 647 ----------CLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKEL 696
Query: 390 PSRIGGGGGKIGDLSISWEP-----LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGN 444
++E + + + N+ E +
Sbjct: 697 EESS---------FRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKE 747
Query: 445 VGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIW 483
+ I ++T Y +++QA N P V
Sbjct: 748 ----SLVISGLRHFTGYRIELQACNQDTPEERCSVAAYV 782
Score = 48.8 bits (115), Expect = 4e-06
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 13/126 (10%)
Query: 269 TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNV 327
+ T+ + G V + W + NG I Y++ R
Sbjct: 783 SARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRY------GD 835
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
E + + + + L P Y ++ A + G G + P+ Y T
Sbjct: 836 EELHLCDTRKHFALERGCRLRG-LSP-GNYSVRIRATSLAGNGSWTEPTYFYVTDYLDV- 892
Query: 388 QAPSRI 393
PS I
Sbjct: 893 --PSNI 896
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 73.6 bits (181), Expect = 2e-16
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 6/96 (6%)
Query: 88 PSFKK--RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE----N 141
P + + + V C P P W K+G R ++ +
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64
Query: 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+L++ V D G Y+C N +G L V+
Sbjct: 65 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100
Score = 64.0 bits (156), Expect = 6e-13
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV--LTIRYLNPERDPAMY 64
+ + C A G P T W +NG+ E Y +++ L + + P D Y
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEFKQE----HRIGGYKVRNQHWSLIMESVVPS-DKGNY 80
Query: 65 QCRAKNQLKTRYSSAQLRVL 84
C +N+ + + L V+
Sbjct: 81 TCVVENEYGSINHTYHLDVV 100
Score = 49.4 bits (118), Expect = 9e-08
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 14/94 (14%)
Query: 187 PPKITIAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG 241
+ A ++ RC A T W NG + +
Sbjct: 15 KRLHAVPAANTVKFRCPAGGNPMPT-------MRWLKNGKEFKQEH--RIGGYKVRNQHW 65
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
L + + +D G Y CVV++ G I+ + V
Sbjct: 66 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 73.6 bits (181), Expect = 3e-16
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 19/111 (17%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIART----NWNSTWFNVSEHV 331
P + VE + ++A +Q+ + AT G PI YK R W+S W++ E
Sbjct: 8 SSPSID----QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 332 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTP 382
+ V +I L P +TY ++ A N G GE S+ S P
Sbjct: 64 MEGIV---------TIVG-LKPETTYAVRLAALNGKGLGEISAASEFKTQP 104
Score = 48.9 bits (117), Expect = 1e-07
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 3/102 (2%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
+ D P +PS + ++ P P + YK WR + + S+
Sbjct: 2 SHMDTP-SSPSIDQVEPYS-STAQVQFDE-PEATGGVPILKYKAEWRAVGEEVWHSKWYD 58
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+V I T Y V++ A+N G G S
Sbjct: 59 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 100
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 73.5 bits (181), Expect = 3e-16
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 15/114 (13%)
Query: 276 EGPPGLPGGVQVV-EVHKTSATIQWTDGA-TNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
GPPG ++ ++W G PI+ Y + V
Sbjct: 6 SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV------ 59
Query: 334 KEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
Y G + E ++ + L+P TY F++ A N++G+G S P P
Sbjct: 60 -----YQGSEVECTVSS-LLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSGP 107
Score = 41.6 bits (98), Expect = 5e-05
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 20/87 (22%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
+ + W P P +P Y + E + V +
Sbjct: 26 IQLRWGP-PLVDGGSPISCYSVEMSPIEKDEPR------------EVYQGSEVECTVSSL 72
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
Y +++A N +G GP SE I
Sbjct: 73 LPGKTYSFRLRAANKMGFGPFSEKCDI 99
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 72.9 bits (179), Expect = 5e-16
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI--------FENGNLLISPVSRDDS 154
+ I + PKP W +G I+ +G L + + ++
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74
Query: 155 GIYSCTATNVHGMDESKGRLIVLHGP 180
G Y+ A N +G DE + + P
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMGWP 100
Score = 55.1 bits (133), Expect = 7e-10
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)
Query: 185 QLPPKIT----IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG 240
P IT + + + + + W +NG + + N
Sbjct: 2 HFAPTITFLESPTSDHHWCIPFTVKGNPKPAL--QWFYNGAILNESKYICTKIHVTNHTE 59
Query: 241 --GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
G L++ N + + G+Y + K+ GK + + G PG
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101
Score = 47.8 bits (114), Expect = 3e-07
Identities = 13/83 (15%), Positives = 19/83 (22%), Gaps = 3/83 (3%)
Query: 4 QADLTWTCEAFGVPDVTYSWFRNGELLNSE--TLPLEDQDRYFIQDNVLTIRYLNPERDP 61
G P WF NG +LN + L + +
Sbjct: 16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHM-NN 74
Query: 62 AMYQCRAKNQLKTRYSSAQLRVL 84
Y AKN+ +
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFM 97
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 74.9 bits (184), Expect = 9e-16
Identities = 34/214 (15%), Positives = 66/214 (30%), Gaps = 28/214 (13%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
S P + V++ +S ++WT N I Y+I T
Sbjct: 12 SGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWT--PLNSSTIIGYRI--------TVVAA 61
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
E + E + ++ L P Y+ V G P++ + Q T
Sbjct: 62 GEGIPIFEDFVDSSVGYYTVTG-LEPGIDYDISVYTVKNGGESTPTTLTQQ--TAVP--- 115
Query: 388 QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447
P+ + + ++W P P + + + + + E +E +
Sbjct: 116 -PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSIS-PSDNA 169
Query: 448 AVVR--IPSEFYYTEYEVKVQAINDVGPGPESEV 479
V+ +P TEY V V ++ +
Sbjct: 170 VVLTNLLP----GTEYVVSVSSVYEQHESTPLRG 199
Score = 58.3 bits (141), Expect = 5e-10
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
+Y+ V + G ST TT+ + P ++ + + + W +T++
Sbjct: 89 DYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFL 146
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
+ N V+E I + + N L+P + Y V + E P
Sbjct: 147 VRYSPVKNEED--VAELSISPSDNAVV------LTN-LLPGTEYVVSVSSVYEQHESTPL 197
Query: 374 S 374
Sbjct: 198 R 198
Score = 44.4 bits (105), Expect = 2e-05
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 23/125 (18%)
Query: 364 GNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAP 418
G+ + SS + + P P+ + D++ + W PL ++
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEVP--QPTDL-----SFVDITDSSIGLRWTPLN----SST 50
Query: 419 NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPE 476
I Y+I + E + +VG V P +Y++ V + + G
Sbjct: 51 IIGYRITVVAAGEGIPIFEDFVD-SSVGYYTVTGLEP----GIDYDISVYTVKNGGESTP 105
Query: 477 SEVVT 481
+ +
Sbjct: 106 TTLTQ 110
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 71.6 bits (176), Expect = 1e-15
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
K P + G + + C +P P + W K+ + ++ ++
Sbjct: 3 KLQICVEP--TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL------YMV 54
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
V + G Y C N +SK I++ +
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
Score = 58.9 bits (143), Expect = 2e-11
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 13/85 (15%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L C A G P Y WF+N L ET + + Y++ E Y
Sbjct: 20 TLVLQCVAVGSPIPHYQWFKNELPLTHET------------KKLYMVPYVDLE-HQGTYW 66
Query: 66 CRAKNQLKTRYSSAQLRVLTLKPSF 90
C N ++ S ++ +
Sbjct: 67 CHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 48.9 bits (117), Expect = 8e-08
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 22/103 (21%)
Query: 187 PPKITI-------AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
+I + L L+C A + Y W N + + +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH--YQWFKNELPLTHET------------ 48
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKI-STKTTVIVEGPPGL 281
L + G Y C V + S K +I++ L
Sbjct: 49 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 71.4 bits (175), Expect = 1e-15
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
+P +ES G + + C W +DG + R +I + +
Sbjct: 8 QPWGVPVEVESLL-VHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI-TGEEVEV 64
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
DSG+Y+C ++ G D + + V
Sbjct: 65 RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 61.7 bits (150), Expect = 3e-12
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 180 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
P + + LQLRC + + W +GV++ E+ I
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDVQ---SINWLRDGVQLV-------ESNRTRIT 58
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
G +E+ ++ AD+G Y CV S G +T +V V
Sbjct: 59 GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 52.1 bits (125), Expect = 7e-09
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
L C + +W R+G L + +R I + +R P D +Y
Sbjct: 26 LLQLRCRLRD-DVQSINWLRDGV-------QLVESNRTRITGEEVEVRDSIPA-DSGLYA 76
Query: 66 CRAKNQLKTRYSSAQLRV 83
C + + + + V
Sbjct: 77 CVTSSPSGSDTTYFSVNV 94
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 72.7 bits (178), Expect = 1e-15
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 18/106 (16%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG------------- 133
F + P GG+V + C +P P+ W +G
Sbjct: 21 MAGFVQAP--LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 134 ---GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ I + +D+G Y C A+N + V
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Score = 57.0 bits (137), Expect = 4e-10
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ----------DNVLTIRYL 55
+ CEA G P W+ G+ N L D R + ++I L
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 56 NPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKP 88
E D Y+CRA N + + RV ++
Sbjct: 98 VEE-DTGTYECRASNDPDRNHLTRAPRVKWVRA 129
Score = 45.0 bits (106), Expect = 6e-06
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 14/100 (14%)
Query: 187 PPKITIAAHRNLQLRCSA-----------HTEELLDVAYIWTHNGVRIGNMDLNELETPN 235
P +++L C A + + +G R+ + ++ +
Sbjct: 28 PLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQH 87
Query: 236 INIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ I D G YEC + + V
Sbjct: 88 AA---STISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 72.1 bits (177), Expect = 2e-15
Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
+ + + G P P + + TS + W + P+ Y + + +
Sbjct: 7 GSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER-PLQGYSVEYQLLNGGELHRL 65
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
+ + +E+ L+P +Y F+V A ++ G+G + P
Sbjct: 66 NIPNPAQT--SVV------VED-LLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGPS 116
Query: 388 QA 389
Sbjct: 117 SG 118
Score = 48.2 bits (115), Expect = 3e-07
Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 33/124 (26%)
Query: 372 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNAPNIYYKIFW 426
SS S A P P+R+ L +SW+ P + P Y + +
Sbjct: 4 GSSGSHDSRLTAGVP-DTPTRL-----VFSALGPTSLRVSWQE-P--RCERPLQGYSVEY 54
Query: 427 RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYT--------EYEVKVQAINDVGPGPESE 478
+ N E + P++ Y +V+A + G G E E
Sbjct: 55 QLLNGGELHRLN-----------IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRERE 103
Query: 479 VVTI 482
V
Sbjct: 104 GVIT 107
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 76.1 bits (186), Expect = 2e-15
Identities = 37/290 (12%), Positives = 69/290 (23%), Gaps = 37/290 (12%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+ TC L E L + + + NV ++ + C
Sbjct: 17 VLVTCSTSCDQPKLLGIETP--LPKKELLLPGNNRKVYELSNV---------QEDSQPMC 65
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPKFVW 123
+ + L V + PL S G+ N+T+ C V
Sbjct: 66 YSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK--NLTLRCQVEGGAPRANLTVVL 123
Query: 124 KKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG--------RLI 175
+ + + +SC + +L
Sbjct: 124 LRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQ 183
Query: 176 VLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235
P+ QL + + CS + A + G ++ P
Sbjct: 184 TFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG--------DQRLNPT 235
Query: 236 INIDGGLLEIT---NASFADAGEYECVVKSTVGKISTKT--TVIVEGPPG 280
+ + + D G +G S +T TV + P
Sbjct: 236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA 285
Score = 29.8 bits (66), Expect = 1.9
Identities = 10/96 (10%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
P K+ + ++ + CS + + ++ ++ + +
Sbjct: 6 PSKVILPRGGSVLVTCST------------SCDQPKLLGIETPLPKKELLLPGNNRKVYE 53
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
++ + + C G+ + KT + V P
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERV 89
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 71.6 bits (176), Expect = 2e-15
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 144
F + A EG T+ C E + WKK + GGR + ++G L
Sbjct: 9 ARFTQDL--KTKEASEGATATLQC--ELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 191
I +S D+G YSC G + + L V LP + T
Sbjct: 65 QIHDLSVADAGEYSCMC----GQERTSATLTV-------RALPARFT 100
Score = 53.1 bits (128), Expect = 4e-09
Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 19/98 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
T CE V V W + E L D RY ++ + L I L+ D
Sbjct: 25 TATLQCELSKVAPVE--WKKGPE-------TLRDGGRYSLKQDGTRCELQIHDLSVA-DA 74
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESET 99
Y C + +SA L V L F + +
Sbjct: 75 GEYSCMCGQE----RTSATLTVRALPARFTE-GSGPSS 107
Score = 46.2 bits (110), Expect = 1e-06
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 15/68 (22%)
Query: 216 WTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKT 271
W + + ++ DG L+I + S ADAGEY C+ G+ T
Sbjct: 40 WKKGPETLR-------DGGRYSLKQDGTRCELQIHDLSVADAGEYSCM----CGQERTSA 88
Query: 272 TVIVEGPP 279
T+ V P
Sbjct: 89 TLTVRALP 96
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 73.4 bits (180), Expect = 2e-15
Identities = 33/190 (17%), Positives = 52/190 (27%), Gaps = 38/190 (20%)
Query: 97 SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS-------------GGRRKIFENGN 143
+ Y GNVT P P + +WKK + + +G+
Sbjct: 3 QQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS 203
L I ++ D Y + N+ K L VL S P I N L C
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVS-----KPMIYWECS-NATLTCE 113
Query: 204 AHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKST 263
E DV + + ++ ++C +
Sbjct: 114 V--LEGTDVELKLYQGKEHLRS--------------LRQKTMSYQWTNLRAPFKCKAVNR 157
Query: 264 VGKISTKTTV 273
V + S V
Sbjct: 158 VSQESEMEVV 167
Score = 61.1 bits (148), Expect = 3e-11
Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 27/165 (16%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELL----NSETLPLED-QDR-YFIQDN-VLTIRYLNPE 58
++T+ + VP W + + + NSE ++R Y + LTI L
Sbjct: 12 NVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSS 70
Query: 59 RDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPK 118
D Y+ + N T L VL + E N T+ C
Sbjct: 71 -DEDEYEMESPNI--TDTMKFFLYVL--------EMVSKPMIYWECSNATLTCEVLEGTD 119
Query: 119 PKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
+ + + S + +S + + C A N
Sbjct: 120 VELKLYQGKEHLRSLRQ--------KTMSYQWTNLRAPFKCKAVN 156
Score = 42.2 bits (99), Expect = 8e-05
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
++ T TCE DV ++ E L S T+ Y A
Sbjct: 104 ECSNATLTCEVLEGTDVELKLYQGKEHLRS--------------LRQKTMSY-QWTNLRA 148
Query: 63 MYQCRAKN 70
++C+A N
Sbjct: 149 PFKCKAVN 156
Score = 38.8 bits (90), Expect = 0.001
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 215 IWTHNGVRIGNMDLNELETPN-------INIDGGLLEITNASFADAGEYECVVKSTVGKI 267
+W ++ ++ +E + ++ G L I N + +D EYE + +
Sbjct: 27 LWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTM 86
Query: 268 STKTTVIV 275
V+
Sbjct: 87 KFFLYVLE 94
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 71.3 bits (175), Expect = 2e-15
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 15/120 (12%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
S+ ++ V P L ++ H SAT+ W + P Y + + V
Sbjct: 2 SSGSSGPVPATPILQ--LEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREV 59
Query: 328 SEHVIGKEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
Y G++ +++ L STY +V A N+ G S + P
Sbjct: 60 -----------YVGKETMCTVDG-LHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGP 107
Score = 42.8 bits (101), Expect = 2e-05
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 21/87 (24%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
++SW+ P Y + N +F+ V
Sbjct: 27 ATLSWKQ--PPLSTVPADGYILELDDGNGGQFRE------------VYVGKETMCTVDGL 72
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
+ Y +V+A N G P S+ + +
Sbjct: 73 HFNSTYNARVKAFNKTGVSPYSKTLVL 99
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 74.2 bits (181), Expect = 2e-15
Identities = 36/198 (18%), Positives = 59/198 (29%), Gaps = 44/198 (22%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
E G+V + C+ A W KDG +IG K + ++D G+Y C +
Sbjct: 17 EDGSVLLTCD---AEAKNITWFKDGKMIGFLTEDKKK----WNLGSNAKDPRGMYQCKGS 69
Query: 163 NVHGM------------DESKGRLIVLHGPS---------------YYEQLPPKITIAAH 195
D K Q P K++I+
Sbjct: 70 QNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129
Query: 196 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFA-DAG 254
+ L C + +W HN I + + NI D L + S +G
Sbjct: 130 T-VILTCPQYPGS----EILWQHNDKNI----GGDEDDKNIGSDEDHLSLKEFSELEQSG 180
Query: 255 EYECVVKSTVGKISTKTT 272
Y C + + + +
Sbjct: 181 YYVCYPRGSKPEDANFYL 198
Score = 66.8 bits (162), Expect = 6e-13
Identities = 25/183 (13%), Positives = 46/183 (25%), Gaps = 40/183 (21%)
Query: 15 GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74
+WF++G+++ T + + MYQC+
Sbjct: 26 DAEAKNITWFKDGKMIGFLT----------EDKKKWNLGSNAKD-PRGMYQCKGSQNKSK 74
Query: 75 RY------------SSAQLRVLTLKPSFKKRPLESE------------TYAGEGGNVTIF 110
+ K K+ + G V +
Sbjct: 75 PLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILT 134
Query: 111 CNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--LLISPVSR-DDSGIYSCTATNVHGM 167
C P + +W+ + IG K + L + S + SG Y C
Sbjct: 135 C--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPE 192
Query: 168 DES 170
D +
Sbjct: 193 DAN 195
Score = 42.2 bits (98), Expect = 1e-04
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+ TC + ++ W N + + + ED ++ L+++ + Y C
Sbjct: 131 VILTCPQYPGSEIL--WQHNDKNIGGD----EDDKNIGSDEDHLSLKEFSELEQSGYYVC 184
Query: 67 RAKNQLKTRYSSAQLRVLTLK 87
+ + L L+
Sbjct: 185 YPRGSKPEDANFY----LYLR 201
Score = 31.4 bits (70), Expect = 0.44
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 10/96 (10%)
Query: 216 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
W +G IG + D + + + G Y+C K +
Sbjct: 34 WFKDGKMIGF----------LTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMG 83
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH 311
+ + K A +DG IT
Sbjct: 84 SADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQ 119
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 71.5 bits (175), Expect = 2e-15
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV-WKKDGNII--GSG 133
SS L V P +A G I C + P P + W N++ G+
Sbjct: 5 SSGTLTVNG-PPIISS---TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS 60
Query: 134 GRRKIFENGN-------LLISPVSR-DDSGIYSCTATNVHGMDESKGRLIV 176
GR + L IS + R D IY+CTA N G D RL
Sbjct: 61 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 46.0 bits (109), Expect = 2e-06
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 166 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 225
G S G L V P Q++C + D W+ + +
Sbjct: 1 GSSGSSGTLTVNGPPII--SSTQTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKENVLES 57
Query: 226 MDLNELETPNINIDGGL---LEITNASFAD-AGEYECVVKSTVGKISTKTTVIVEGPP 279
I+ + G+ L I+N AD Y C ++ G + + +G
Sbjct: 58 GTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
Score = 45.7 bits (108), Expect = 2e-06
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 10 TCEAFGVPD-VTYSWFRNGELLNSETLP---LEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
C P +W +L S T +E + LTI + +Y
Sbjct: 34 KCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYN 93
Query: 66 CRAKNQLKTRYSSAQLRV 83
C A N + +L+
Sbjct: 94 CTAWNSFGSDTEIIRLKE 111
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 74.8 bits (184), Expect = 4e-15
Identities = 35/220 (15%), Positives = 63/220 (28%), Gaps = 33/220 (15%)
Query: 265 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTW 324
G + V P + V +V T A ++WT + +
Sbjct: 4 GISGGGGGIPV---IDGPTQILVRDVSDTVAFVEWTPPRA---KVDFILLKYGLVGGEGG 57
Query: 325 FNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 384
+ S++ L P S YE + A + SS T D
Sbjct: 58 K--------TTFRLQPPLSQYSVQA-LRPGSRYEVSISAVRGTNESDASSTQFT--TEID 106
Query: 385 KPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEY-G 443
AP + G L + W+ A YK+ + ++ + + G
Sbjct: 107 ----APKNLRVGSRTATSLDLEWDN-----SEAEAQEYKVVYSTLAGEQYHEVLVPKGIG 157
Query: 444 NVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
+ +P TEY V + A+ + + +
Sbjct: 158 PTTKTTLTDLVP----GTEYGVGISAVMNSKQSIPATMNA 193
Score = 72.9 bits (179), Expect = 2e-14
Identities = 34/232 (14%), Positives = 67/232 (28%), Gaps = 39/232 (16%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
YE + + S ++ P ++V TS ++W + YK
Sbjct: 80 RYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWD--NSEA-EAQEYK 136
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
++ T + V + T + + LVP + Y + A P+
Sbjct: 137 VVYSTLAGEQYHEVLVPKGIGPTTKTT------LTD-LVPGTEYGVGISAVMNSKQSIPA 189
Query: 374 SPSPQYNTPADKPY------QAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
+ + + T D P + + I S+ W + P +Y+I +
Sbjct: 190 TMNAR--TELDSPRDLMVTASSETSI----------SLIWTK-A----SGPIDHYRITFT 232
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEV 479
+ + + EY + + A ES V
Sbjct: 233 PSSGISSEVTV-----PRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTV 279
Score = 59.4 bits (144), Expect = 5e-10
Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 25/185 (13%)
Query: 199 QLRCSAHTEELLDVAYIWTH-----NGVRIGNMDLNELETPNINIDGGLLEITNASFAD- 252
LR + T LD+ W + ++ L + + + G+ T + D
Sbjct: 110 NLRVGSRTATSLDLE--WDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDL 167
Query: 253 -AG-EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI 309
G EY + + K S T+ P + V +TS ++ WT +G PI
Sbjct: 168 VPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWT--KASG-PI 224
Query: 310 THYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGY 369
HY+I + + E + ++ YT + + L P + Y + A
Sbjct: 225 DHYRITFTPSSGISS----EVTVPRDRTSYT------LTD-LEPGAEYIISITAERGRQQ 273
Query: 370 GEPSS 374
S+
Sbjct: 274 SLEST 278
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 75.9 bits (187), Expect = 7e-15
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII---GSGGRRKIFENGNLLISPVSRD 152
+ + EG V C + P P +W + S GR +F +G L +
Sbjct: 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQ 451
Query: 153 DSGIYSCTATNVHGMDESKGRLIV 176
D+G Y C A N G D L V
Sbjct: 452 DNGTYLCIAANAGGNDSMPAHLHV 475
Score = 51.6 bits (124), Expect = 4e-07
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 179 GPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI 238
++ ++ + +Q C A + + +W + + N T +
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAI--LWLSPRKHLVSAKSNGRLTVFPD- 440
Query: 239 DGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
G LE+ A D G Y C+ + G S + V
Sbjct: 441 --GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 39.7 bits (93), Expect = 0.002
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCRA 68
C A G P W + + R + + L +RY + D Y C A
Sbjct: 406 VCRADGDPPPAILWLSP----RKHLVSAKSNGRLTVFPDGTLEVRYAQVQ-DNGTYLCIA 460
Query: 69 KNQLKTRYSSAQLRV 83
N A L V
Sbjct: 461 ANAGGNDSMPAHLHV 475
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 69.8 bits (171), Expect = 8e-15
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 106 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI-------FENGNLLISPVSRDDSGIYS 158
I P P W +G + + G LL + + ++G Y+
Sbjct: 22 EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81
Query: 159 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITI 192
A N G L P +++ P I
Sbjct: 82 LIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPI 115
Score = 52.5 bits (126), Expect = 1e-08
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 10 TCEAFGVPDVTYSWFRNG-ELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
G P T W NG L S+ + +E I + L + Y A
Sbjct: 26 EFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHY-NNGNYTLIA 84
Query: 69 KNQLKTRYSSAQLRVL 84
KN L T + L
Sbjct: 85 KNPLGTANQTINGHFL 100
Score = 50.2 bits (120), Expect = 5e-08
Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 17/106 (16%)
Query: 185 QLPPKIT----IAAHRNLQLRCSAH-----TEELLDVAYIWTHNGVRIGNMDLNELET-P 234
PP++ + T W HNG + + +E
Sbjct: 6 YYPPRVVSLEEPELRLEHCIEFVVRGNPPPT-------LHWLHNGQPLRESKIIHVEYYQ 58
Query: 235 NINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
I G L + + G Y + K+ +G + P
Sbjct: 59 EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF 104
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 69.4 bits (170), Expect = 1e-14
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 4/116 (3%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRI-GGGGGKIGDLSISWEPLPREKQNAPNIYYKIFW 426
G S T P AP + ++ I W P ++Q+ + Y+I
Sbjct: 1 GSSGSSGWILAS-TTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISH 59
Query: 427 RKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
++ + + N A I + + V++ A+ G GP S+ V I
Sbjct: 60 VWQSAGISKELLEEVGQNGSRAR--ISVQVHNATCTVRIAAVTRGGVGPFSDPVKI 113
Score = 47.1 bits (112), Expect = 7e-07
Identities = 24/118 (20%), Positives = 34/118 (28%), Gaps = 17/118 (14%)
Query: 278 PPGLPGGVQVVEVH-KTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
P P V V + I+W +G + Y+I + E V
Sbjct: 18 PSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGE-LVGYRISHVWQSAGISKELLEEVGQ 76
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
A I V +T ++ A G G S P + PA PS
Sbjct: 77 NG-------SRARISV-QVHNATCTVRIAAVTRGGVGPFSDPV-KIFIPAH---SGPS 122
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 68.1 bits (167), Expect = 2e-14
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+K PL G + P WK G + + +I E+G
Sbjct: 5 LIEVEK-PLYGVE-VFVGETAHFEI-ELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI 61
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L++ +G S A N S L V
Sbjct: 62 LILHNCQLGMTGEVSFQAANTK----SAANLKV 90
Score = 49.6 bits (119), Expect = 6e-08
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 17/80 (21%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAM 63
+ E PDV W G+ PL I ++ +L +
Sbjct: 24 HFEIE-LSEPDVHGQWKLKGQ-------PLAASPDCEIIEDGKKHILILHNCQLG-MTGE 74
Query: 64 YQCRAKNQLKTRYSSAQLRV 83
+A N S+A L+V
Sbjct: 75 VSFQAANT----KSAANLKV 90
Score = 41.1 bits (97), Expect = 4e-05
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 15/70 (21%)
Query: 211 DVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGK 266
DV W G + +P+ I DG L + N GE
Sbjct: 33 DVHGQWKLKGQPLA-------ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQ----AAN 81
Query: 267 ISTKTTVIVE 276
+ + V+
Sbjct: 82 TKSAANLKVK 91
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 73.0 bits (179), Expect = 2e-14
Identities = 41/267 (15%), Positives = 67/267 (25%), Gaps = 31/267 (11%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+T C + ++ + Q + + Y C
Sbjct: 41 VTLRCHY-RHRFNNFMLYKEDRIHIPIFHGRIFQ-------ESFNMSPVTTA-HAGNYTC 91
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRP----LESETYAGEGGNVTIFCNPEAAPKPKFV 122
R + SA + + + R G V + C + F
Sbjct: 92 RGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMF-EHFF 150
Query: 123 WKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDE----SKGRL 174
K+G +G N I P+ +G Y C + H + S
Sbjct: 151 LHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLD 210
Query: 175 IVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELE 232
IV+ GP L P + A ++ L CS+ Y + R G L
Sbjct: 211 IVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR---SSYDMYHLS----REGGAHERRLP 263
Query: 233 TPNINIDGGLLEITNASFADAGEYECV 259
+ G Y C
Sbjct: 264 AVRKVNRTFQADFPLGPATHGGTYRCF 290
Score = 64.9 bits (158), Expect = 1e-11
Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 13/162 (8%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
GG+VT+ C+ F+ K+ I +IF+ + +SPV+ +G Y+C +
Sbjct: 37 RGGHVTLRCHYR-HRFNNFMLYKEDRIHIPIFHGRIFQE-SFNMSPVTTAHAGNYTCRGS 94
Query: 163 NVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAYIW 216
+ H S +I++ G L P + + + L+C + +
Sbjct: 95 HPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIM---FEHFFL 151
Query: 217 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
G+ L ++ I A AG Y C
Sbjct: 152 HKEGISKDPSRLVGQIHDGVS--KANFSIGPMMLALAGTYRC 191
Score = 48.3 bits (115), Expect = 3e-06
Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 13/167 (7%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
+ C + + + + G + L + D + +I + Y+C
Sbjct: 136 VILQCWS-DIMFEHFFLHKEGISKDPSRLVGQIHDGVSKAN--FSIGPMMLA-LAGTYRC 191
Query: 67 RAKNQLKTRYSSA-----QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
SA + V T + G +VT+ C+ + +
Sbjct: 192 YGSVTHTPYQLSAPSDPLDIVV-TGPYEKPSLSAQPGPKVQAGESVTLSCSSRS-SYDMY 249
Query: 122 VWKKDGNIIGSGGRRKIFENGN--LLISPVSRDDSGIYSCTATNVHG 166
++G N G Y C + H
Sbjct: 250 HLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHS 296
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 67.0 bits (164), Expect = 4e-14
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 93 RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LLISPV 149
PL +T G + + C E + W K+G + R K+ + G L+I+
Sbjct: 12 TPLTDQT-VNLGKEICLKC--EISENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANA 68
Query: 150 SRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
+D G Y ++ V+ GPS
Sbjct: 69 LTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98
Score = 49.6 bits (119), Expect = 6e-08
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 24/105 (22%)
Query: 187 PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 238
KI T+ + + L+C ++ WT NG+ + E+ + +
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISE----NIPGKWTKNGLPVQ-------ESDRLKVV 55
Query: 239 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPG 280
G + L I NA D G+Y + ++ V V P
Sbjct: 56 QKGRIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98
Score = 47.3 bits (113), Expect = 4e-07
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 16/83 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
++ CE W +NG P+++ DR + L I E D
Sbjct: 24 EICLKCEISENIPGK--WTKNGL-------PVQESDRLKVVQKGRIHKLVIANALTE-DE 73
Query: 62 AMYQCRAKNQLKTRYSSAQLRVL 84
Y T A++ V+
Sbjct: 74 GDYVFAPDAYNVT--LPAKVHVI 94
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 67.4 bits (165), Expect = 6e-14
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 373 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 432
SS S +T P P + + ++W+ +E QN Y+I +R+ +
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 433 EFQSETLKEYGNVG-IAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
++ E G V + + + +Y V VQA N G GP S +
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINA 112
Score = 47.7 bits (114), Expect = 5e-07
Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P G P V + V S + W NG I Y+I R N + S
Sbjct: 15 PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGV-IRGYQIGYRENSPGSNGQYSI----V 69
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
E+ + +++N L ++ Y V A N G G SS
Sbjct: 70 EMKATGDSEVYTLDN-LKKFAQYGVVVQAFNRAGTGPSSSE 109
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 67.1 bits (164), Expect = 7e-14
Identities = 21/121 (17%), Positives = 32/121 (26%), Gaps = 12/121 (9%)
Query: 268 STKTTVIVEGPPGLPGGVQVV-EVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWF 325
PG+P V ++H S I W NG I Y + N +
Sbjct: 7 GVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKW 66
Query: 326 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADK 385
+ +E + L P Y +V ++ G S
Sbjct: 67 EMIYSGATRE---------HLCDR-LNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSG 116
Query: 386 P 386
P
Sbjct: 117 P 117
Score = 40.1 bits (94), Expect = 2e-04
Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 21/119 (17%)
Query: 372 PSSPSPQYNTPADKPYQAPSRIGGGGGKIGD-LSISWEPLPREKQNAPNIYYKIFWRKKN 430
SS ++ T DKP P + G I+W+P P++ A Y + + +
Sbjct: 4 GSSGVVEFTTCPDKP-GIPVKPSVKGKIHSHSFKITWDP-PKDNGGATINKYVVEMAEGS 61
Query: 431 DTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEVVTI 482
+ GN + + + Y ++V I+D G SE + +
Sbjct: 62 N-----------GNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLV 109
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 66.5 bits (163), Expect = 9e-14
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
PG +Q V TS I W A P+ Y++ N+
Sbjct: 5 SSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIE------- 57
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+E L ++ Y + +A N G G +
Sbjct: 58 ----VDGLSYKLEG-LKKFTEYSLRFLAYNRYGPGVSTDDI 93
Score = 50.7 bits (122), Expect = 3e-08
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 22/87 (25%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
+ I+WEP P N P Y++F + + + Q+ + + Y
Sbjct: 24 ILITWEP-P-AYANGPVQGYRLFCTEVSTGKEQN-------------IEVDGLSYKLEGL 68
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
+TEY ++ A N GPG ++ +T+
Sbjct: 69 KKFTEYSLRFLAYNRYGPGVSTDDITV 95
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 67.4 bits (165), Expect = 9e-14
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S T P P ++ + +SW P P + +N Y + +
Sbjct: 1 GSSGSSGTIEAR-TAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYE 59
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ + + + + +TEY V V+A DVGPGPES V +
Sbjct: 60 AVDGEDRGRHVVDGISR-EHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLV 113
Score = 48.9 bits (117), Expect = 2e-07
Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P P V V + T+ + W + NG IT Y + I +
Sbjct: 18 PSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGV-ITQYSVAYEAVDGEDRGRHVVDGISR 76
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
E + + L W+ Y V A ++G G SSP T D P P
Sbjct: 77 EHSSWD------LVG-LEKWTEYRVWVRAHTDVGPGPESSPV-LVRTDEDVPSGPPR 125
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 66.3 bits (162), Expect = 9e-14
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRR 136
SS ++ K++P E A G + T+ C A + + W KDG + S +
Sbjct: 5 SSGKVVFA------KEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKV 57
Query: 137 KIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
++ G L++ + ++G YSC A + RL V
Sbjct: 58 RVEAVGCTRRLVVQQAGQAEAGEYSCEAGG----QQLSFRLQV 96
Score = 47.4 bits (113), Expect = 4e-07
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 22/116 (18%)
Query: 166 GMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGN 225
G S G+++ + + + A + L C + +V W +G ++
Sbjct: 1 GSSGSSGKVVFAKEQPAHRE----VQAEAGASATLSCEV-AQAQTEV--TWYKDGKKLS- 52
Query: 226 MDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEG 277
+ + + G L + A A+AGEY C G + V G
Sbjct: 53 ------SSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCE----AGGQQLSFRLQVAG 98
Score = 42.8 bits (101), Expect = 2e-05
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 17/82 (20%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
T +CE +W+++G+ L + ++ L ++ +
Sbjct: 28 SATLSCEV-AQAQTEVTWYKDGK-------KLSSSSKVRVEAVGCTRRLVVQQAGQA-EA 78
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y C A Q S +L+V
Sbjct: 79 GEYSCEAGGQ----QLSFRLQV 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 71.4 bits (175), Expect = 1e-13
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 3/108 (2%)
Query: 77 SSAQLRVLTLKPSFK-KRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNII--GSG 133
S +L + F ES A G +TI C+ + K +
Sbjct: 233 HSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGS 292
Query: 134 GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
NG+L V +D G+Y+C A + L V +
Sbjct: 293 NGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTL 340
Score = 54.5 bits (131), Expect = 4e-08
Identities = 13/101 (12%), Positives = 25/101 (24%), Gaps = 6/101 (5%)
Query: 183 YEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGL 242
E L +RC + + +W L++ ++++ G
Sbjct: 249 SEYKESAWEAHLGDTLTIRCDTKQQ---GMTKVWVSPS---NEQVLSQGSNGSVSVRNGD 302
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 283
L D G Y C + + V
Sbjct: 303 LFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGH 343
Score = 42.5 bits (100), Expect = 2e-04
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 19/115 (16%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
LT C+ + E + S+ +++ L + + E D +Y C
Sbjct: 264 LTIRCDTKQQGMTKVWVSPSNEQVLSQG----SNGSVSVRNGDLFFKKVQVE-DGGVYTC 318
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKF 121
A + S +L+V G + T+ + P+F
Sbjct: 319 YAMGETFNETLSVELKVYNFTL--------------HGHHDTLNAAADPWSHPQF 359
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 65.8 bits (161), Expect = 1e-13
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 144
F + L + E G C E P W+K + + G+ + + G L
Sbjct: 9 NCFTE-ELTNLQ-VEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLRL 65
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
IS + + DS Y+C G +S+ +L+V
Sbjct: 66 TISALEKADSDTYTCDI----GQAQSRAQLLV 93
Score = 45.8 bits (109), Expect = 2e-06
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 15/72 (20%)
Query: 215 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 270
W + + + +G L I+ AD+ Y C +G+ ++
Sbjct: 40 TWRKGLLEL-------RASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQAQSR 88
Query: 271 TTVIVEGPPGLP 282
++V+G P
Sbjct: 89 AQLLVQGRRSGP 100
Score = 43.9 bits (104), Expect = 7e-06
Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 17/88 (19%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAM 63
+TC+ P T +W + L ++ LTI L D
Sbjct: 27 VFTCKT-EHPAATVTWRKGLL-------ELRASGKHQPSQEGLTLRLTISALEKA-DSDT 77
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFK 91
Y C S AQL V +
Sbjct: 78 YTCDIGQAQ----SRAQLLVQGRRSGPS 101
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 66.7 bits (162), Expect = 1e-13
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNM-----DLNELETPNINIDGG 241
I ++ L L C+A TE + + + W + + + DL +
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L I + +D G Y C S + T V V P
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 56.3 bits (135), Expect = 5e-10
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 17/111 (15%)
Query: 87 KPSFKKRPLE----SETYAGEGGNVTIFCNPEAAPKPK--FVWKKDGNIIGSG------- 133
P ++ + G + + C F W+ +
Sbjct: 2 DPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 61
Query: 134 ----GRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
G L I V+R D G+Y+C A++ ++ + V P
Sbjct: 62 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 43.6 bits (102), Expect = 2e-05
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 7 LTWTCEAFGVPD--VTYSWFRNGELLN-----SETLPLEDQDRYFIQDNVLTIRYLNPER 59
L C A + + ++W + L + + LTI +
Sbjct: 26 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS- 84
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRV 83
D +Y C A + L T+ +S +RV
Sbjct: 85 DQGLYTCAASSGLMTKKNSTFVRV 108
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 68.1 bits (166), Expect = 2e-13
Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 34/191 (17%)
Query: 103 EGGNVTIFCNPEAAPKPKFV-WKKDGNII------------------GSGGRRKIFENGN 143
G +VT+ A K F+ W + + G R ++ +
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE-QLPPKITIAAHRNLQLRC 202
L +S + +D+G Y + S L +L + ++ L L C
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131
Query: 203 SAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKS 262
S + +V++ W G + PN+ + + + +Y C+ ++
Sbjct: 132 SVEDAD-DNVSFRWEALGNTL-------SSQPNLTV------SWDPRISSEQDYTCIAEN 177
Query: 263 TVGKISTKTTV 273
V +S +
Sbjct: 178 AVSNLSFSVSA 188
Score = 41.9 bits (98), Expect = 1e-04
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 6 DLTWTCEAF-GVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMY 64
+L TC +V++ W G L+S+ LT+ + Y
Sbjct: 126 ELHLTCSVEDADDNVSFRWEALGNTLSSQ--------------PNLTVSWDPRISSEQDY 171
Query: 65 QCRAKNQLKTRYSSAQLRVL 84
C A+N + S + L
Sbjct: 172 TCIAENAVSNLSFSVSAQKL 191
Score = 35.0 bits (80), Expect = 0.032
Identities = 14/108 (12%), Positives = 34/108 (31%), Gaps = 13/108 (12%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDG------ 240
P + ++ L E ++ W N + + +E ++P I++
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVN-FITWLFNETSLAFIVPHETKSPEIHVTNPKQGKR 63
Query: 241 ------GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
L+++N D G Y + + + T+ +
Sbjct: 64 LNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNI 111
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 66.2 bits (162), Expect = 2e-13
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 12/100 (12%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
PG ++ TS T+ W + I +YK+ +V
Sbjct: 15 VQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVD------- 67
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+I L ++ Y F+V+A N+ G G +
Sbjct: 68 ----VSSHSYTING-LKKYTEYSFRVVAYNKHGPGVSTPD 102
Score = 46.9 bits (112), Expect = 7e-07
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 22/87 (25%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
++++WE P N YK+++ +K + Q V + S Y
Sbjct: 34 ITVTWET-P-VSGNGEIQNYKLYYMEKGTDKEQD-------------VDVSSHSYTINGL 78
Query: 458 --YTEYEVKVQAINDVGPGPESEVVTI 482
YTEY +V A N GPG + V +
Sbjct: 79 KKYTEYSFRVVAYNKHGPGVSTPDVAV 105
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 71.3 bits (175), Expect = 2e-13
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKD-GNIIGS---GGRRKIFENG 142
P P + EG + C P W G ++ R + +G
Sbjct: 352 APFIMDAP--RDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDG 407
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIV----LHGPSYY 183
L S V D+G+Y+C TNV G + L V H ++
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHHH 452
Score = 51.3 bits (123), Expect = 4e-07
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH-NGVRIGNMDLNELETPNINI-DGGL 242
P + I+ R +L+C + W NG + + + P I++ + G
Sbjct: 357 DAPRDLNISEGRMAELKCRTPPM----SSVKWLLPNGTVLSHASRH----PRISVLNDGT 408
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L ++ +D G Y C+V + G + + V
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
Score = 36.6 bits (85), Expect = 0.019
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 9/86 (10%)
Query: 6 DLTWTCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAM 63
C + V W NG +L+ + R + ++ L ++ D +
Sbjct: 369 MAELKCRTPPMSSVK--WLLPNGTVLSHAS----RHPRISVLNDGTLNFSHVLLS-DTGV 421
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPS 89
Y C N +SA L V T
Sbjct: 422 YTCMVTNVAGNSNASAYLNVSTAGTH 447
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 65.6 bits (160), Expect = 2e-13
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 11/116 (9%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S T P Q P + + ++WE + + + YK+F+R
Sbjct: 1 GSSGSSGTVNVT-TKKTPPSQPPGNVVWNATD-TKVLLNWEQVKAMENESEVTGYKVFYR 58
Query: 428 KKNDTEFQS-ETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ Q T K + + +Y ++V+A D G G SE + I
Sbjct: 59 TSSQNNVQVLNTNKTSAELVLP--------IKEDYIIEVKATTDGGDGTSSEQIRI 106
Score = 47.9 bits (114), Expect = 4e-07
Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 17/114 (14%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
+ PP P G V T + W +T YK+ RT+ + ++ +
Sbjct: 15 KTPPSQPPGNVVWNATDTKVLLNWEQVKAMENES-EVTGYKVFYRTSSQNNVQVLNTN-- 71
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ S E VL Y +V A + G G S + P
Sbjct: 72 -----------KTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 65.8 bits (161), Expect = 2e-13
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S + + D P +AP+ +G ++S+ WE + Y+I +
Sbjct: 1 GSSGSSGVAVIN-SAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYW 55
Query: 428 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+D E + ++ A + +P T+Y ++V A N G GP S+++
Sbjct: 56 AAHDKEEAANRVQVTSQEYSARLENLLP----DTQYFIEVGACNSAGCGPPSDMIEA 108
Score = 45.8 bits (109), Expect = 2e-06
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P V V + + ++ W + Y+I W + V
Sbjct: 18 PSEAPTEVGVKVLSSSEISVHWEHVL-EKI-VESYQI-------RYWAAHDKEEAANRVQ 68
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ A +EN L+P + Y +V A N G G PS
Sbjct: 69 VTSQEYSARLEN-LLPDTQYFIEVGACNSAGCGPPSDM 105
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 64.7 bits (158), Expect = 2e-13
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
+F K+P G K W++ G+ I + + + G
Sbjct: 8 VSAFSKKP--RSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHT 64
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L + V D G Y+ A G + K L V
Sbjct: 65 LTVREVGPADQGSYAVIA----GSSKVKFDLKV 93
Score = 45.4 bits (108), Expect = 2e-06
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 17/82 (20%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ E V W R G + ++Y + LT+R + P D
Sbjct: 25 PAVFEAETER-AGVKVRWQRGGS-------DISASNKYGLATEGTRHTLTVREVGPA-DQ 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y A + L+V
Sbjct: 76 GSYAVIAGSSK----VKFDLKV 93
Score = 42.3 bits (100), Expect = 2e-05
Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 18/101 (17%)
Query: 180 PSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 238
S + + P + +AA V W G I + +
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETERA---GVKVRWQRGGSDIS-------ASNKYGLA 57
Query: 239 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
+G L + AD G Y + G K + V
Sbjct: 58 TEGTRHTLTVREVGPADQGSYAVI----AGSSKVKFDLKVI 94
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 67.2 bits (164), Expect = 3e-13
Identities = 31/189 (16%), Positives = 50/189 (26%), Gaps = 42/189 (22%)
Query: 103 EGGNVTIFCNPEAAPKPKFV------------WKKDGNIIGSGGRRK-----IFENGNLL 145
G NVT+ + + + +G K NG L
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLP-PKITIAAHRNLQLRCSA 204
I VS++D G Y + D+ K + V YE + P I N L C
Sbjct: 73 IYNVSKEDRGDYYMRMLH-ETEDQWKITMEV------YEMVSKPMIYWEC-SNATLTCEV 124
Query: 205 HTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTV 264
DV + + ++ ++C + V
Sbjct: 125 LEGT--DVELKLYQGKEHLRS--------------LRQKTMSYQWTNLRAPFKCKAVNRV 168
Query: 265 GKISTKTTV 273
+ S V
Sbjct: 169 SQESEMEVV 177
Score = 41.0 bits (96), Expect = 3e-04
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 3 NQADLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
++ T TCE DV ++ E L S T+ Y A
Sbjct: 114 ECSNATLTCEVLEGTDVELKLYQGKEHLRS--------------LRQKTMSY-QWTNLRA 158
Query: 63 MYQCRAKN 70
++C+A N
Sbjct: 159 PFKCKAVN 166
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 67.4 bits (164), Expect = 3e-13
Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 35/198 (17%)
Query: 101 AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG------GRRKIFE------NGNLLISP 148
G +V++ C+ + + + R + E I
Sbjct: 14 VDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS 73
Query: 149 VSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRN-LQLRCSAH-- 205
V DSG Y C D + + + Y ++ +I +QL C A
Sbjct: 74 VQVRDSGQYRCLVICGAAWDYKY---LTVKVKASYMRIDTRILEVPGTGEVQLTCQARGY 130
Query: 206 -TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFADAGEYECVVK 261
E+ W + V T +I GL ++T + + C+
Sbjct: 131 PLAEV-----SWQNVSV--------PANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFW 177
Query: 262 STVGKISTKTTVIVEGPP 279
+ K T +
Sbjct: 178 NAHMKELTSAIIDPLSRM 195
Score = 67.0 bits (163), Expect = 5e-13
Identities = 21/180 (11%), Positives = 45/180 (25%), Gaps = 16/180 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV------LTIRYLNPER 59
++ C+ R L+ + +++ + I +
Sbjct: 19 SVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVR- 77
Query: 60 DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKP 119
D Y+C Y ++V R G V + C P
Sbjct: 78 DSGQYRCLVICGAAWDYKYLTVKVKASYM----RIDTRILEVPGTGEVQLTCQARGYPLA 133
Query: 120 KFVWKKDGNIIGSGGRRKIFENGNLLIS---PVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ W+ + G ++ + S +SC N H + + +
Sbjct: 134 EVSWQNVSVPANT--SHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP 191
Score = 38.1 bits (88), Expect = 0.003
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69
TC+A G P SW + + T + + + +VL ++ + + C
Sbjct: 124 TCQARGYPLAEVSWQNVS--VPANTSHIRTPEGLYQVTSVLRLK----PQPSRNFSCMFW 177
Query: 70 NQLKTRYSSAQLRVLTLKPSFKKR 93
N +SA + L+ R
Sbjct: 178 NAHMKELTSAIIDPLSRMEPKVPR 201
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 64.7 bits (158), Expect = 3e-13
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 75 RYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN-IIGSG 133
+ + + +F+K+ + +G + + A + W K+G I SG
Sbjct: 4 HHHHSSMDEKK-STAFQKKLEPAYQ-VSKGHKIRLTVE-LADHDAEVKWLKNGQEIQMSG 60
Query: 134 GRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ G L IS S D Y C ++ L V
Sbjct: 61 SKYIFESIGAKRTLTISQCSLADDAAYQCVVGG----EKCSTELFV 102
Score = 48.5 bits (116), Expect = 2e-07
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 169 ESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 228
+ ++ ++L P ++ ++L + +V W NG I
Sbjct: 5 HHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEV--KWLKNGQEI----- 56
Query: 229 NELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
++ G L I+ S AD Y+CV VG T + V+
Sbjct: 57 -QMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV----VGGEKCSTELFVK 103
Score = 45.4 bits (108), Expect = 2e-06
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 16/82 (19%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ T E D W +NG+ + +Y + LTI + D
Sbjct: 33 KIRLTVELAD-HDAEVKWLKNGQEIQ------MSGSKYIFESIGAKRTLTISQCSLA-DD 84
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
A YQC + S +L V
Sbjct: 85 AAYQCVVGGEK----CSTELFV 102
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 65.5 bits (160), Expect = 4e-13
Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S T +D P AP + + I W+P QN YKI +R
Sbjct: 1 GSSGSSGDVAVR-TLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYR 59
Query: 428 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
K + +ETL G ++ TEY +V A+ G GP ++ ++
Sbjct: 60 KASRKSDVTETLVS-GTQLSQLIEGLDR----GTEYNFRVAALTINGTGPATDWLSA 111
Score = 47.0 bits (112), Expect = 1e-06
Identities = 24/116 (20%), Positives = 34/116 (29%), Gaps = 14/116 (12%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P P + + + S I W NG+ IT YKI + S
Sbjct: 18 PSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQ-ITGYKI--------RYRKASRKSDVT 68
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 390
E + IE L + Y F+V A G G + T +
Sbjct: 69 ETLVSGTQLSQLIEG-LDRGTEYNFRVAALTINGTGPATDWL-SAETFESDLDETR 122
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 64.2 bits (156), Expect = 5e-13
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 9/110 (8%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
P V + W + + Y + R + W + V G E
Sbjct: 5 SSGLSPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQG-SQGWEVLDPAVAGTE- 62
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
E + L+ YEF+++A +PS+ + + P
Sbjct: 63 ------TELLVPG-LIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSGP 105
Score = 34.1 bits (78), Expect = 0.020
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 5/78 (6%)
Query: 405 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464
+ W+P E Y + R+ + E L + +P YE +
Sbjct: 25 LHWDP--PELVPKRLDGYVLEGRQGSQ---GWEVLDPAVAGTETELLVPGLIKDVLYEFR 79
Query: 465 VQAINDVGPGPESEVVTI 482
+ A S +
Sbjct: 80 LVAFAGSFVSDPSNTANV 97
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 70.3 bits (172), Expect = 5e-13
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV 122
R + A +P F +P +E GEG + +C A+ P
Sbjct: 458 YSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTE--VGEGQSANFYCRVIASSPPVVT 515
Query: 123 WKKDGNIIGSGGRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
W KD + + NGN L I+ V DD G Y+ A N +G E L V
Sbjct: 516 WHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 60.2 bits (146), Expect = 8e-10
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 18/125 (14%)
Query: 272 TVIVEGPPGLPGGVQVVEVHKTSATIQWT----DGATNGRPITHYKIIARTNWNSTWFNV 327
V P P + + + + W DG G +T+Y I R +W
Sbjct: 3 MVADVPEPEPPRFPIIENILDEAVILSWKPPALDG---GSLVTNYTIEKREAMGGSWSPC 59
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPY 387
++ R + L YEF++IA N+ G +P P+ P D+
Sbjct: 60 AK-----------SRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERK 108
Query: 388 QAPSR 392
+
Sbjct: 109 RRRGY 113
Score = 42.9 bits (101), Expect = 2e-04
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQ--DNV--LTIRYLNPERDPAMYQ 65
C +W ++ L+ +Y + N LTI + + D Y
Sbjct: 503 YCRVIASSPPVVTWHKDDR-------ELKQSVKYMKRYNGNDYGLTINRVKGD-DKGEYT 554
Query: 66 CRAKNQLKTRYSSAQLRV 83
RAKN T+ L V
Sbjct: 555 VRAKNSYGTKEEIVFLNV 572
Score = 36.4 bits (84), Expect = 0.020
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 11/65 (16%)
Query: 215 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 270
W + + ++ +G L I D GEY K++ G
Sbjct: 515 TWHKDDREL-------KQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEI 567
Query: 271 TTVIV 275
+ V
Sbjct: 568 VFLNV 572
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 63.9 bits (156), Expect = 7e-13
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
KR EG + + C + +W G +GS R + G
Sbjct: 9 VGITKRL--KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L++ + D+G + + SK LIV
Sbjct: 67 LVVREAAPSDAGEVVFSVRGL----TSKASLIV 95
Score = 47.8 bits (114), Expect = 3e-07
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 190 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 245
+ + + C + E +WT G +G + G L +
Sbjct: 18 MEVLEGESCSFECVL-SHESASDPAMWTVGGKTVG-------SSSRFQATRQGRKYILVV 69
Query: 246 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 284
A+ +DAGE V +++K ++IV G G
Sbjct: 70 REAAPSDAGEVVFS----VRGLTSKASLIVRERSGPSSG 104
Score = 45.1 bits (107), Expect = 3e-06
Identities = 12/79 (15%), Positives = 19/79 (24%), Gaps = 17/79 (21%)
Query: 10 TCE-AFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMY 64
C + W G+ + R+ +L +R P D
Sbjct: 29 ECVLSHESASDPAMWTVGGK-------TVGSSSRFQATRQGRKYILVVREAAPS-DAGEV 80
Query: 65 QCRAKNQLKTRYSSAQLRV 83
+ S A L V
Sbjct: 81 VFSVRGLT----SKASLIV 95
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 62.7 bits (153), Expect = 2e-12
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
+ + P P + G ++W+P ++N I Y + +R N + L+
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINS----QQELQ 58
Query: 441 EYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ P T Y++KV+A G GP S +
Sbjct: 59 NITTDTRFTLTGLKP----DTTYDIKVRAWTSKGSGPLSPSIQS 98
Score = 49.2 bits (118), Expect = 9e-08
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
GP G P + V + ++ + W NGR I Y ++ R +
Sbjct: 6 SGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGR-IISYTVVFRDINSQQELQNI---- 60
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
T ++ L P +TY+ KV A G G S
Sbjct: 61 -------TTDTRFTLTG-LKPDTTYDIKVRAWTSKGSGPLSPS 95
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 65.5 bits (159), Expect = 2e-12
Identities = 43/211 (20%), Positives = 72/211 (34%), Gaps = 17/211 (8%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
PPG P + +K + T W G G P T+Y + + +++ G
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGTDGGLP-TNYSLTYHREGETLMHECPDYITGGPNS 61
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS--PQYNTPADKPYQAPSRIGG 395
+ G++ S+ W TY V A N++G Y D P + +
Sbjct: 62 CHFGKQYTSM------WRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQ 115
Query: 396 GGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIP 453
+ L I W P L K + Y+I + + E++ + +I
Sbjct: 116 PEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTE-----FKIL 170
Query: 454 SEFYYTEYEVKVQAINDVGPGPE-SEVVTIW 483
S +Y V+V+ D G S I
Sbjct: 171 SLHPGQKYLVQVRCKPDHGYWSAWSPATFIQ 201
Score = 35.5 bits (81), Expect = 0.021
Identities = 25/133 (18%), Positives = 40/133 (30%), Gaps = 15/133 (11%)
Query: 260 VKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITH----YKII 315
S + V + P L V+ E K I+W+ Y+I
Sbjct: 88 SFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIR 147
Query: 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ + W E+ + E I + L P Y +V + GY SP
Sbjct: 148 LKPEKAAEW----------EIHFAGQQTEFKILS-LHPGQKYLVQVRCKPDHGYWSAWSP 196
Query: 376 SPQYNTPADKPYQ 388
+ P+D
Sbjct: 197 ATFIQIPSDFTMN 209
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 67.9 bits (166), Expect = 2e-12
Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 24/148 (16%)
Query: 52 IRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTL------KPSFKKRPLESETYAGEGG 105
I+ + P +C LK RY + L P + P ++ EG
Sbjct: 304 IKDMAPSNTACCARCNTPPNLKGRY----IGELDQNYFTCYAPVIVEPP--ADLNVTEGM 357
Query: 106 NVTIFCNPEAAPKPKFVWKK-DGNIIGSG---GRRKIFENGNLLISPVSRDDSGIYSCTA 161
+ C + W +G ++ G R + +G L + V+ D+G+Y+C
Sbjct: 358 AAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMV 416
Query: 162 TNVHGMDESKGRLIVLHGPSYYEQLPPK 189
+N G + L V
Sbjct: 417 SNSVGNTTASATLNVT-------GTHHH 437
Score = 54.8 bits (132), Expect = 3e-08
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-DGGLL 243
+ P + + +L+C A T + W G + + I + G L
Sbjct: 346 EPPADLNVTEGMAAELKCRASTSL---TSVSWITPN---GTVMTHGAYKVRIAVLSDGTL 399
Query: 244 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
TN + D G Y C+V ++VG + T+ V G
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
Score = 40.5 bits (95), Expect = 0.001
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 10 TCEAFGVPDVTYSWFR-NGELLNSETLPLEDQDRYFIQDN-VLTIRYLNPERDPAMYQCR 67
C A + SW NG ++ + R + + L + + D MY C
Sbjct: 362 KCRAST-SLTSVSWITPNGTVMTHGA----YKVRIAVLSDGTLNFTNVTVQ-DTGMYTCM 415
Query: 68 AKNQLKTRYSSAQLRVLTLKPSF 90
N + +SA L V
Sbjct: 416 VSNSVGNTTASATLNVTGTHHHH 438
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 64.8 bits (158), Expect = 2e-12
Identities = 24/207 (11%), Positives = 62/207 (29%), Gaps = 34/207 (16%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P ++V + +T+ +++W Y++ + + E++
Sbjct: 6 DLDNPKDLEVSDPTETTLSLRWR--RPVA-KFDRYRLTYVSP-SGKK---------NEME 52
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGG 397
+ L + Y ++A +P++ T +P I
Sbjct: 53 IPVDSTSFILRG-LDAGTEYTISLVAEKGRHKSKPTTIKGS--TVVG----SPKGISFSD 105
Query: 398 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSE 455
++SW P + Y++ + T+ G+ + +P
Sbjct: 106 ITENSATVSWTPPR-----SRVDSYRVSYVPITGGTPNVVTVD--GSKTRTKLVKLVP-- 156
Query: 456 FYYTEYEVKVQAINDVGPG-PESEVVT 481
+Y V + ++ P S ++
Sbjct: 157 --GVDYNVNIISVKGFEESEPISGILK 181
Score = 55.1 bits (133), Expect = 4e-09
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 14/123 (11%)
Query: 255 EYECVVKS-TVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYK 313
EY + + S TT+ G P G+ ++ + SAT+ WT + Y+
Sbjct: 70 EYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWT--PPRS-RVDSYR 126
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
+ T V + + LVP Y +I+ EP
Sbjct: 127 VSYVPITGGTP---------NVVTVDGSKTRTKLVK-LVPGVDYNVNIISVKGFEESEPI 176
Query: 374 SPS 376
S
Sbjct: 177 SGI 179
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 62.5 bits (152), Expect = 2e-12
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 16/111 (14%)
Query: 85 TLKPSFKKRPLE-SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN 143
T S+ P A V + C P + W KDG + + +
Sbjct: 8 TDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDT 66
Query: 144 ---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKIT 191
L++ V +DSG Y C + + + + V + P +I
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEIDD----ESASFTVTV-------TEPPVRII 106
Score = 46.7 bits (111), Expect = 1e-06
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 190 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 245
+ + L C +V WT +G + E+P + + + + L +
Sbjct: 23 VAAVRLERVVLTCEL-CRPWAEV--RWTKDGEEVV-------ESPALLLQKEDTVRRLVL 72
Query: 246 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
D+GEY C + S TV V PP
Sbjct: 73 PAVQLEDSGEYLCE----IDDESASFTVTVTEPP 102
Score = 44.0 bits (104), Expect = 7e-06
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 17/96 (17%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ TCE P W ++GE + + +Q L + + E D
Sbjct: 30 RVVLTCEL-CRPWAEVRWTKDGE-------EVVESPALLLQKEDTVRRLVLPAVQLE-DS 80
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLES 97
Y C ++ +S + V S
Sbjct: 81 GEYLCEIDDES----ASFTVTVTEPPVRIIYSGPSS 112
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 62.4 bits (152), Expect = 2e-12
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
PG + + +A +QW + Y++ + + GK+
Sbjct: 5 SSGPG-RPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTID---FGKD 60
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+T + L +TY F++ A N G GE + TP D
Sbjct: 61 DQHFT------VTG-LHKGTTYIFRLAAKNRAGLGEEFEKEIR--TPEDLS 102
Score = 39.7 bits (93), Expect = 2e-04
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+ W P P+E + Y++ + + ++ + + + T Y
Sbjct: 23 ALLQWHP-PKE-LPGELLGYRLQYCRADEARPNTIDFGKDDQH----FTVTGLHKGTTYI 76
Query: 463 VKVQAINDVGPGPESEVVTI 482
++ A N G G E E
Sbjct: 77 FRLAAKNRAGLGEEFEKEIR 96
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 63.0 bits (153), Expect = 3e-12
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 10/93 (10%)
Query: 106 NVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI----------FENGNLLISPVSRDDSG 155
+ I + + P P W +G+++ +G L ++ + ++G
Sbjct: 17 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 76
Query: 156 IYSCTATNVHGMDESKGRLIVLHGPSYYEQLPP 188
Y+ A N G + + P + P
Sbjct: 77 NYTLLAANPFGQASASIMAAFMDNPFEFNPEDP 109
Score = 54.9 bits (132), Expect = 2e-09
Identities = 12/93 (12%), Positives = 23/93 (24%), Gaps = 7/93 (7%)
Query: 216 WTHNGVRIGNMDLNELE----TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKT 271
W NG + E N + G L + + + G Y + + G+ S
Sbjct: 34 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93
Query: 272 TVIVEGPPGLP---GGVQVVEVHKTSATIQWTD 301
P + + +
Sbjct: 94 MAAFMDNPFEFNPEDPIPDTNSTSGDPVEKKDE 126
Score = 44.5 bits (105), Expect = 6e-06
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 11 CEAFGVPDVTYSWFRNGELLNS----ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
G P + W NG +LN T LE ++ L + + Y
Sbjct: 22 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV-NNGNYTL 80
Query: 67 RAKNQLKTRYSSAQLRVL 84
A N +S +
Sbjct: 81 LAANPFGQASASIMAAFM 98
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 62.0 bits (151), Expect = 3e-12
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 17/105 (16%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNIIGSGGR 135
SS QL VL + + T C E + K W K+G + R
Sbjct: 5 SSGQLEVL--------QDIADLT-VKAAEQAVFKC--EVSDEKVTGKWYKNGVEVRPSKR 53
Query: 136 RKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
I G L+I V +D G Y+ +L L
Sbjct: 54 ITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYAL--SLSAKLNFL 96
Score = 48.2 bits (115), Expect = 2e-07
Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 15/88 (17%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ CE VT W++NG + R I L I + PE D
Sbjct: 25 QAVFKCEVSD-EKVTGKWYKNGV-------EVRPSKRITISHVGRFHKLVIDDVRPE-DE 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRVLTLKPS 89
Y + SA+L L +K S
Sbjct: 76 GDYTFVPDGYALS--LSAKLNFLEIKVS 101
Score = 43.5 bits (103), Expect = 9e-06
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 21/99 (21%)
Query: 187 PPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 238
++ T+ A +C E V W NGV + + I I
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDE---KVTGKWYKNGVEVR-------PSKRITIS 57
Query: 239 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVI 274
G L I + D G+Y V +S K +
Sbjct: 58 HVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL 96
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 61.9 bits (150), Expect = 6e-12
Identities = 22/125 (17%), Positives = 35/125 (28%), Gaps = 18/125 (14%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRP-----ITHYKIIARTNWNS 322
S+ P P V +V S + W R + I
Sbjct: 5 SSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH 64
Query: 323 TWFNVSEHVIGKEVDRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNT 381
++ + YTG +E L P + Y+F++ + G E S T
Sbjct: 65 SYGVI-----------YTGYATRHVVEG-LEPRTLYKFRLKVTSPSGEYEYSPVVSVATT 112
Query: 382 PADKP 386
P
Sbjct: 113 RESGP 117
Score = 41.1 bits (96), Expect = 1e-04
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSI--SWEPLPREKQNAPNIYYKIF 425
G S P P KP P GK+ SI W+ +EK+ P + F
Sbjct: 1 GSSGSSGMEPHKVVPLSKP-HPPV-----VGKVTHHSIELYWDLEQKEKRQGPQEQWLRF 54
Query: 426 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
++ D + S + G VV T Y+ +++ + G S VV++
Sbjct: 55 SIEEEDPKMHSYGVIYTGYATRHVVEGLEPR--TLYKFRLKVTSPSGEYEYSPVVSV 109
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 63.9 bits (155), Expect = 7e-12
Identities = 28/204 (13%), Positives = 64/204 (31%), Gaps = 19/204 (9%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
PP P + + +W G T++ + + + ++
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDGG-RETHLETNFTLKSEWATHKFADCKAKR------- 58
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS---RIG 394
+++ V + E V A N LG + P K P +
Sbjct: 59 --DTPTSCTVDYSTVYFVNIEVWVEAENALG---KVTSDHINFDPVYKVKPNPPHNLSVI 113
Query: 395 GGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPS 454
L ++W ++ + Y I +R K+ + + ++ + +
Sbjct: 114 NSEELSSILKLTWTNPSI--KSVIILKYNIQYRTKDASTWSQIPPEDT-ASTRSSFTVQD 170
Query: 455 EFYYTEYEVKVQAINDVGPGPESE 478
+TEY +++ + + G G S+
Sbjct: 171 LKPFTEYVFRIRCMKEDGKGYWSD 194
Score = 55.8 bits (134), Expect = 4e-09
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 259 VVKSTVGKISTKT---TVIVEGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYK 313
++ +GK+++ + + P P + V E + + WT+ + I Y
Sbjct: 81 EAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYN 140
Query: 314 IIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS 373
I RT STW + D + R ++++ L P++ Y F++ E G G S
Sbjct: 141 IQYRTKDASTWSQIPP------EDTASTRSSFTVQD-LKPFTEYVFRIRCMKEDGKGYWS 193
Query: 374 SPSPQYN--TPADKPYQAPS 391
S + + T D+P + PS
Sbjct: 194 DWSEEASGITYEDRPSKEPS 213
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 64.5 bits (157), Expect = 7e-12
Identities = 26/179 (14%), Positives = 49/179 (27%), Gaps = 23/179 (12%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-- 142
KP E + VTI C N A ++ +G++ +
Sbjct: 7 KPFIW---AEPHFMVPKEKQVTICCQGNYGAV---EYQLHFEGSLFAVDRPKPPERINKV 60
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQ 199
I ++ +G YSC E L ++ Y + P + + +
Sbjct: 61 KFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVT 120
Query: 200 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
C T ++ G + ++ + + A G Y C
Sbjct: 121 FYCRLDTA---TSMFLLLKEG------RSSHVQRGY-GKVQAEFPLGPVTTAHRGTYRC 169
Score = 53.8 bits (129), Expect = 3e-08
Identities = 25/156 (16%), Positives = 42/156 (26%), Gaps = 11/156 (7%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETL-PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
C+ V Y G L + P E ++ I +N Y C
Sbjct: 27 CCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINK-----VKFYIPDMNSR-MAGQYSCIY 79
Query: 69 KNQLKTRYSSAQLRVLTLKPSFKKRPLES-ETYAGEGGNVTIFCNPEAAPKPKFVWKKDG 127
+ S L ++ + G VT +C + F+ K+G
Sbjct: 80 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDT-ATSMFLLLKEG 138
Query: 128 NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
+ + PV+ G Y C +
Sbjct: 139 RSSHVQRGYGKVQ-AEFPLGPVTTAHRGTYRCFGSY 173
Score = 31.4 bits (71), Expect = 0.57
Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 17/109 (15%)
Query: 184 EQLPPKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235
+Q PK I A + + + C + V Y G ++ + P
Sbjct: 2 QQTLPKPFIWAEPHFMVPKEKQVTICCQGNYG---AVEYQLHFEG----SLFAVDRPKPP 54
Query: 236 INIDGGLLEITNASFADAGEYECVVKSTVGKI--STKTTVIVEGPPGLP 282
I+ I + + AG+Y C+ + S ++V P
Sbjct: 55 ERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTP 103
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 61.3 bits (149), Expect = 7e-12
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 1/102 (0%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
+ + P P + + W +P N P + I++R D++ S+ K
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRP-TDSDNDSDYKK 61
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ I T Y++K+Q N+ G S V+
Sbjct: 62 DMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMIC 103
Score = 57.5 bits (139), Expect = 1e-10
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
GP P V++T+ ++W N PI + I R + + + ++
Sbjct: 6 SGPVAGPYITFTDAVNETTIMLKWMYIPASNNNT-PIHGFYIYYRPTDSDNDSDYKKDMV 64
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ ++ I + L P ++Y+ K+ NE G E S+ T A
Sbjct: 65 EGDRYWHS------ISH-LQPETSYDIKMQCFNEGGESEFSNVM-ICETKARSG 110
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 61.7 bits (150), Expect = 8e-12
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 373 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT 432
SS S + + D P AP + + W+P+P + Y+I++ K +
Sbjct: 2 SSGSSGH-SGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSS 60
Query: 433 EFQSETLKEYGNVGIAV----VRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
++ E + +P ++ Y + V+ +N G GP S
Sbjct: 61 SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVF 114
Score = 49.7 bits (119), Expect = 1e-07
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P PG V+V V+ T A + W + G + Y+I +S+ N H+ K
Sbjct: 14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGH-LQGYRIYYWKTQSSSKRNR-RHIEKK 71
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ + + L P+S Y V N G G S +NTP
Sbjct: 72 ILTFQGSKTHGMLPG-LEPFSHYTLNVRVVNGKGEGPASPDR-VFNTPEGSG 121
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 61.6 bits (150), Expect = 8e-12
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
+ PG P G+ EV TS + W A I Y+I R N +T + V+
Sbjct: 25 DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLN-TTTANTATVEVLAPS 83
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+YT L P S Y F++ A G+GE + P
Sbjct: 84 ARQYT------ATG-LKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSGP 127
Score = 59.3 bits (144), Expect = 5e-11
Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 19/128 (14%)
Query: 363 AGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEPLPREKQNA 417
+ +G G PS P T D P P I ++ + W+P P N
Sbjct: 5 SSGRIGDGSPSHPPILERTLDDVP-GPPMGI-----LFPEVRTTSVRLIWQP-P-AAPNG 56
Query: 418 PNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGP 475
+ Y+I R T + + P + Y ++ A G G
Sbjct: 57 IILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKP----ESVYLFRITAQTRKGWGE 112
Query: 476 ESEVVTIW 483
+E + +
Sbjct: 113 AAEALVVT 120
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 66.1 bits (160), Expect = 9e-12
Identities = 42/312 (13%), Positives = 80/312 (25%), Gaps = 32/312 (10%)
Query: 170 SKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN 229
S + I + P + A N+ + C + T+ + + +
Sbjct: 193 SPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTK---------------VLSGQIG 237
Query: 230 ELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVE 289
P I++ G + I + + + T V PP +P +
Sbjct: 238 NTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCET 297
Query: 290 VHKTSATIQWTDGAT---NGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEAS 346
W G G T Y + + S F ++ T
Sbjct: 298 HDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVF--------HRIEGLTNETYRL 349
Query: 347 IENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSIS 406
+ + F + N LG + + N P+ + ++ S
Sbjct: 350 GVQMHPGQEIHNFTLTGRNPLG---QAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFS 406
Query: 407 WEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQ 466
W N+ +I K N + V + YT Y +V+
Sbjct: 407 WY--LPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVR 464
Query: 467 AINDVGPGPESE 478
+ S
Sbjct: 465 CSSK-TFWKWSR 475
Score = 46.9 bits (110), Expect = 1e-05
Identities = 39/285 (13%), Positives = 84/285 (29%), Gaps = 33/285 (11%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
G N+TI C + +I G+ N+ +S S + I T
Sbjct: 217 AGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENS--GTNIIFITDD 274
Query: 163 NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCS------AHTEELLDVAYIW 216
+V+G G Y +P K++ H ++ CS + Y
Sbjct: 275 DVYGTVVFAG---------YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTL 325
Query: 217 THNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTV--- 273
+ + N L + + + ++ +G+ + +
Sbjct: 326 FESISGKSAVFHRIEGLTNETYR---LGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVT 382
Query: 274 -IVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
V P ++V +++ T T W + +I + +
Sbjct: 383 ERVAPHD--PTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATI-- 438
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
+++ L P++ Y F+V ++ + + S S
Sbjct: 439 ---RGAEDSTYHVAVDK-LNPYTAYTFRVRCSSK-TFWKWSRWSD 478
Score = 33.0 bits (74), Expect = 0.25
Identities = 19/211 (9%), Positives = 46/211 (21%), Gaps = 28/211 (13%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
++ + W P T I + ++S
Sbjct: 4 DDDDKDLKCTTNNMRVWDCTWPAPLGVS-PGTVKDICIKDRFHSCH-------------- 48
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIG-GGG 397
+ +++ + +E + N + P + P +
Sbjct: 49 --PLETTNVKIPALSPGDHEVTINYLNGFQSKFTLNEKDVSLIP-----ETPEILDLSAD 101
Query: 398 GKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDT-----EFQSETLKEYGNVGIAVVRI 452
L + W + N ++I + T + L V
Sbjct: 102 FFTSSLLLKWNDRGSALPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTS 161
Query: 453 PSEFYYTEYEVKVQAINDVGPGPESEVVTIW 483
+ V ++ D + + W
Sbjct: 162 DLPLQCATHSVSIRWHIDSPHFSGYKEWSDW 192
Score = 32.2 bits (72), Expect = 0.40
Identities = 18/179 (10%), Positives = 42/179 (23%), Gaps = 13/179 (7%)
Query: 306 GRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGN 365
G +T + + N +I G+ A + +I
Sbjct: 218 GSNMTICCMSPTKVLSGQIGNTLRPLI-----HLYGQTVAIHILNIPVSENSGTNIIFIT 272
Query: 366 ELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIF 425
+ A P P ++ + ++ SW P R +
Sbjct: 273 DDDVYGTV-------VFAGYPPDVPQKLSCETHDLKEIICSWNP-GRITGLVGPRNTEYT 324
Query: 426 WRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484
+ + E + + + + N +G + V+ +
Sbjct: 325 LFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTE 383
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 61.2 bits (148), Expect = 1e-11
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 17/109 (15%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGNI---IGSGGRRKIFEN 141
F ++P G ++T +A KP W K + +G ++ E
Sbjct: 8 ILFIEKP--QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 142 GN---------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
+ I + +G Y C T D L V
Sbjct: 66 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 114
Score = 49.6 bits (118), Expect = 1e-07
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 7/107 (6%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRI------GNMDLNELETPNINID 239
P T+ ++ E+LL I W ++ L E + +
Sbjct: 14 PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 73
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQ 286
++I A AG Y C V S + V G +
Sbjct: 74 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120
Score = 41.9 bits (98), Expect = 6e-05
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 6 DLTWTCEAFGVPDV---TYSWFRNG--ELLNSETLPLEDQDRYFIQDNV----LTIRYLN 56
D+T+ + + T WF+ +L + L+ ++ + V + I
Sbjct: 24 DITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAK 83
Query: 57 PERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPS 89
Y+C + K S L V +
Sbjct: 84 DN-FAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 63.1 bits (153), Expect = 1e-11
Identities = 35/222 (15%), Positives = 63/222 (28%), Gaps = 40/222 (18%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
GP + S IQW A I+ Y + R + E I +
Sbjct: 2 GPV--EVFITETPSQPNSHPIQWN--APQPSHISKYILRWRPKNSVGR--WKEATIPGHL 55
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP----------SSPSPQYNTPADKP 386
+ YT I+ L P YE ++I+ + G+ E S+P +
Sbjct: 56 NSYT------IKG-LKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETT 108
Query: 387 YQAPSRIGG---GGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEF-QSETLKEY 442
+P +SW +++ + + + Q L
Sbjct: 109 PFSPLVATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGDEPQYLDLP-- 161
Query: 443 GNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ +P +Y V V I++ G +
Sbjct: 162 STATSVNIPDLLPG----RKYIVNVYQISEDGEQSLILSTSQ 199
Score = 50.8 bits (121), Expect = 1e-07
Identities = 16/114 (14%), Positives = 31/114 (27%), Gaps = 12/114 (10%)
Query: 261 KSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 320
ST +T T P + V E+ +S + W ++ +++ +
Sbjct: 94 TSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA---SDTVSGFRVEYELSE 150
Query: 321 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
+ I + L+P Y V +E G
Sbjct: 151 EGDE--PQYLDLPSTATSVN------IPD-LLPGRKYIVNVYQISEDGEQSLIL 195
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 60.1 bits (146), Expect = 1e-11
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+ + W +P N P + I++R D++ S+ ++ I T Y+
Sbjct: 21 IMLKWTYIPSSNNNTPIQGFYIYYRP-TDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYD 79
Query: 463 VKVQAINDVGPGPESEVVTI 482
+K+Q N+ G S V+
Sbjct: 80 IKMQCFNEGGESEFSNVMIC 99
Score = 52.8 bits (127), Expect = 5e-09
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWT---DGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
P P V T ++WT N PI + I R + + V+
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNT-PIQGFYIYYRPTDSDNDSDYKRDVVE- 61
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
++ I + L P ++Y+ K+ NE G E S+
Sbjct: 62 -----GSKQWHMIGH-LQPETSYDIKMQCFNEGGESEFSNV 96
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 60.4 bits (146), Expect = 1e-11
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 17/104 (16%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGNI---IGSGGRRKIFEN 141
F RP + GG++T A P W K + G ++ ++
Sbjct: 5 GLFVMRP--QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 142 GN---------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ L I+ +G Y C + D S L V
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 44.6 bits (105), Expect = 5e-06
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI-WTHNGVRI------GNMDLNELETPNINID 239
P + ++ LL + W ++ L++ +
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
L IT+A A G Y C V + + + V
Sbjct: 71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 38.1 bits (88), Expect = 9e-04
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 6 DLTWTCEAFGVPDV---TYSWFRNG--ELLNSETLPLEDQDRYFIQDNV----LTIRYLN 56
+T++ G + WF+ +L + L+ D Y V L I
Sbjct: 21 SITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQ 80
Query: 57 PERDPAMYQCRAKNQLKTRYSSAQLRV 83
P Y+C + K S+ L V
Sbjct: 81 PA-FTGSYRCEVSTKDKFDCSNFNLTV 106
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 60.0 bits (146), Expect = 2e-11
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 144
+ K PLE + G +V + C A P W KD I + + G L
Sbjct: 9 AAIIK-PLEDQW-VAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAML 65
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+I S D+G Y+C +S L V
Sbjct: 66 VIRGASLKDAGEYTCEVEA----SKSTASLHV 93
Score = 46.1 bits (110), Expect = 1e-06
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 17/82 (20%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
D+ CE W ++ + + +Y + +L IR + + D
Sbjct: 25 DVELRCELSR-AGTPVHWLKDRK-------AIRKSQKYDVVCEGTMAMLVIRGASLK-DA 75
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
Y C + S+A L V
Sbjct: 76 GEYTCEVEASK----STASLHV 93
Score = 44.2 bits (105), Expect = 5e-06
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 25/107 (23%)
Query: 187 PPKIT-------IAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI- 238
P I +A +++LRC + V W + I ++ ++
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCEL-SRAGTPV--HWLKDRKAI-------RKSQKYDVV 57
Query: 239 -DGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
+G + L I AS DAGEY C V+++ + ++ VE P
Sbjct: 58 CEGTMAMLVIRGASLKDAGEYTCEVEAS----KSTASLHVEEKASGP 100
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 59.7 bits (145), Expect = 2e-11
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 16/97 (16%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAA-PKPKFVWKKDGNII----GSGGRRKIFENG 142
PLE + G V + E + + +W K+G + R + ++G
Sbjct: 9 VLIVT-PLEDQQ-VFVGDRVEMAV--EVSEEGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 143 N---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L+ S V ++D G Y + + LIV
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNG----GQCEAELIV 97
Score = 45.4 bits (108), Expect = 2e-06
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 17/104 (16%)
Query: 184 EQLPPKI-------TIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
P I + +++ E +W NGV + D +
Sbjct: 5 SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEE---GAQVMWMKNGVELTREDSFKARY-RF 60
Query: 237 NIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
DG L ++ D G Y+ + + +IVE
Sbjct: 61 KKDGKRHILIFSDVVQEDRGRYQVI----TNGGQCEAELIVEEK 100
Score = 45.0 bits (107), Expect = 3e-06
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 13/78 (16%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQ 65
E W +NG L E + RY + + +L + E D YQ
Sbjct: 29 AVEV-SEEGAQVMWMKNGVELTREDSF---KARYRFKKDGKRHILIFSDVVQE-DRGRYQ 83
Query: 66 CRAKNQLKTRYSSAQLRV 83
A+L V
Sbjct: 84 VITNGG----QCEAELIV 97
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 60.5 bits (146), Expect = 2e-11
Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 32/107 (29%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDG-----------------------------NIIGSG 133
G + + P P +W+K + +
Sbjct: 32 AGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE 91
Query: 134 GRRKIFENGN---LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
GR ++ + + ++D G+Y+ T N G D+ + V+
Sbjct: 92 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138
Score = 42.0 bits (98), Expect = 6e-05
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 188 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----DGGLL 243
P T+ + + A D + + + L + + D +
Sbjct: 46 PAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIF 105
Query: 244 EITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ A D G Y VK+ VG+ TV V
Sbjct: 106 TVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 38.6 bits (89), Expect = 0.001
Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 27/105 (25%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSET----------------------LPLEDQDRY 43
L G P T W + N L E + R
Sbjct: 35 KLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRV 94
Query: 44 FIQDN----VLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84
++ + T+ E D +Y KN + + ++V+
Sbjct: 95 RVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVGEDQVNLTVKVI 138
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 62.3 bits (151), Expect = 3e-11
Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 13/148 (8%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTI 109
L I + + D +Y+C Y ++V + K +
Sbjct: 82 LQITDVKLQ-DAGVYRCMISYG-GADYKRITVKV---NAPYNKINQRILVVDPVTSEHEL 136
Query: 110 FCNPEAAPKPKFVWKK-DGNIIGSGGRRKIFENGNLLIS-----PVSRDDSGIYSCTATN 163
C E PK + +W D ++ + L + ++ + I+ CT
Sbjct: 137 TCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRR 196
Query: 164 VHGMDESKGRLIVLHGPSYYEQLPPKIT 191
+ + L++ P P + T
Sbjct: 197 LDPEENHTAELVIPELPL--AHPPNERT 222
Score = 58.1 bits (140), Expect = 7e-10
Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 36/208 (17%)
Query: 101 AGEGGNVTIFC----NPEAAPKP-KFVWKKDGNIIGS---------------GGRRKIFE 140
G N+TI C + W+ + I R ++ +
Sbjct: 13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72
Query: 141 ------NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAA 194
N L I+ V D+G+Y C + G D + + V P +
Sbjct: 73 DQLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNA-PYNKINQRILVVDPV 130
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASFA 251
+L C A +V IWT + + + T N + L +T +
Sbjct: 131 TSEHELTCQAEGYPKAEV--IWTSSD---HQVLSGKTTTTNSKREEKLFNVTSTLRINTT 185
Query: 252 DAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ C + + + +++ P
Sbjct: 186 TNEIFYCTFRRLDPEENHTAELVIPELP 213
Score = 40.4 bits (94), Expect = 6e-04
Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 35/178 (19%)
Query: 187 PPK-ITIAAHRNLQLRCS---AHTEELLDVAYIWTHNGVRI-----GNMDLNE------- 230
P + N+ + C +L + W I G DL
Sbjct: 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66
Query: 231 ---LETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQV 287
L +++ L+IT+ DAG Y C++ S G + TV V P +
Sbjct: 67 RARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRIL 125
Query: 288 VEVHKTS-------------ATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
V TS A + WT ++ + ++ + FNV+ +
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVIWTS--SDHQVLSGKTTTTNSKREEKLFNVTSTLR 181
Score = 37.3 bits (86), Expect = 0.006
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRN-GELLNS--ETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
+ TC+A G P W + ++L+ T + +++ F + L I
Sbjct: 133 EHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRIN----TTTNE 188
Query: 63 MYQCRAKNQLKTRYSSAQLRV 83
++ C + +A+L +
Sbjct: 189 IFYCTFRRLDPEENHTAELVI 209
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 58.9 bits (143), Expect = 4e-11
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 9/93 (9%)
Query: 88 PSFKKRPLE-SETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
P P + V + C + W KDG + + +G
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L++ DSG + C + + V
Sbjct: 67 LILPEAKVQDSGEFECRTEG----VSAFFGVTV 95
Score = 48.5 bits (116), Expect = 2e-07
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 18/99 (18%)
Query: 190 ITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI--DGGL--LEI 245
+T + L C D W +G ++ E+ + + DG L +
Sbjct: 20 LTFTTSERVVLTCELSRV---DFPATWYKDGQKV-------EESELLVVKMDGRKHRLIL 69
Query: 246 TNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGG 284
A D+GE+EC +S V V+ P G G
Sbjct: 70 PEAKVQDSGEFECR----TEGVSAFFGVTVQDPSGPSSG 104
Score = 41.6 bits (98), Expect = 4e-05
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDP 61
+ TCE D +W+++G+ +E+ + ++ + L + + D
Sbjct: 27 RVVLTCELSR-VDFPATWYKDGQ-------KVEESELLVVKMDGRKHRLILPEAKVQ-DS 77
Query: 62 AMYQCRAKNQLKTRYSSAQLRV 83
++CR + + + V
Sbjct: 78 GEFECRTEGV----SAFFGVTV 95
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 61.0 bits (147), Expect = 4e-11
Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 43/180 (23%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ TC ++ W +NG+ L + D L ++ + D Y
Sbjct: 16 SVELTCPLDSDENLK--WEKNGQELPQKH------------DKHLVLQDFSEVEDSGYYV 61
Query: 66 CRAKNQLKTRYSSAQLRVLTLK----------------------PSFKKRPLESETYAGE 103
C K Y + RV + + K + L +
Sbjct: 62 CYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRG 121
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
G+V + C W KDG+II K + ++D G Y C
Sbjct: 122 DGSVLLTCG---LTDKTIKWLKDGSIISPLNATK----NTWNLGNNAKDPRGTYQCQGAK 174
Score = 47.2 bits (111), Expect = 2e-06
Identities = 26/189 (13%), Positives = 51/189 (26%), Gaps = 48/189 (25%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSR-DDSGIYSCTAT 162
G +V + C + W+K+G + + +L++ S +DSG Y C
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELPQKHDK------HLVLQDFSEVEDSGYYVCYTP 65
Query: 163 N------------VHGMDESKGRLIVL-------HGPSYYEQLPPKITIAAHRN-----L 198
V D++K + K + + +
Sbjct: 66 ASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSV 125
Query: 199 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
L C + W +G I ++ + + N + G Y+C
Sbjct: 126 LLTCGLTDKT-----IKWLKDGSIISPLNATKNT----------WNLGNNAKDPRGTYQC 170
Query: 259 VVKSTVGKI 267
Sbjct: 171 QGAKETSNP 179
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 58.5 bits (142), Expect = 4e-11
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---L 144
F++ + EGG T+ C + P W N++ G + + + G L
Sbjct: 9 VRFQEAL--KDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLEL 65
Query: 145 LISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
++ + DSG YSC+ G + L V PS
Sbjct: 66 VVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPS 98
Score = 46.9 bits (112), Expect = 5e-07
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 15/72 (20%)
Query: 215 IWTHNGVRIGNMDLNELETPNINI--DGGL--LEITNASFADAGEYECVVKSTVGKISTK 270
W + + ++ +G + L + N D+G Y C G +T
Sbjct: 40 KWCYGNNVL-------RPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTS 88
Query: 271 TTVIVEGPPGLP 282
T+ V P P
Sbjct: 89 ATLTVTALPSGP 100
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 61.4 bits (149), Expect = 4e-11
Identities = 28/186 (15%), Positives = 54/186 (29%), Gaps = 19/186 (10%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVWKKDGNIIGSGGRRK 137
AQ P +S G+V I C A + + K+ G R K
Sbjct: 2 AQEGDFP-MPFIS---AKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLK 57
Query: 138 IFE--NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITI 192
+ + +I + + +G Y C H L ++ Y + + +
Sbjct: 58 FWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVL 117
Query: 193 AAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFAD 252
N+ L C + + + G +L+ + + +
Sbjct: 118 MPGENISLTC--SSAHIPFDRFSLAKEG------ELSLPQHQSGE-HPANFSLGPVDLNV 168
Query: 253 AGEYEC 258
+G Y C
Sbjct: 169 SGIYRC 174
Score = 57.2 bits (138), Expect = 1e-09
Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 10/160 (6%)
Query: 10 TCEA-FGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMYQCR 67
C+A +N + + +++ + + I +++ YQC+
Sbjct: 29 QCQAIREAYLTQLMIIKNSTYR-----EIGRRLKFWNETDPEFVIDHMDAN-KAGRYQCQ 82
Query: 68 AKNQLKTRYSSAQLRVLTLKPSFKKRP-LESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
+ S L ++ K + G N+++ C+ P +F K+
Sbjct: 83 YRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKE 142
Query: 127 GNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
G + + N + PV + SGIY C
Sbjct: 143 GELSLPQHQSGEH-PANFSLGPVDLNVSGIYRCYGWYNRS 181
Score = 28.7 bits (64), Expect = 3.5
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 15/105 (14%)
Query: 188 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
P I+A +++++C A E L I ++ R N
Sbjct: 8 PMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGR-----RLKFWNET 62
Query: 240 GGLLEITNASFADAGEYECVVKSTVG--KISTKTTVIVEGPPGLP 282
I + AG Y+C + + S ++V G G P
Sbjct: 63 DPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKP 107
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 58.9 bits (143), Expect = 5e-11
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 10/113 (8%)
Query: 276 EGPPGLPGGVQV--VEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
GP P + V E + + W IT Y + + N + I
Sbjct: 6 SGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETIS 65
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
R I + L + Y F++ A N G G S P + T
Sbjct: 66 ------GDRLTHQIMD-LNLDTMYYFRIQARNSKGVGPLSDPI-LFRTLKVSG 110
Score = 52.4 bits (126), Expect = 1e-08
Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 380 NTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETL 439
++ + P AP + + ++ P + N Y +F+ + +
Sbjct: 2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIM 61
Query: 440 KEY-GNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ G+ + T Y ++QA N G GP S+ +
Sbjct: 62 ETISGDRLTHQIMDLNL----DTMYYFRIQARNSKGVGPLSDPILF 103
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 58.6 bits (142), Expect = 5e-11
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
+P ++VV TS I W ++ + +Y+I ++ V E +
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDAPMSSS-SVYYYRITYGETGGNSP--VQEFTVPYSSS 60
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
T I L P Y V A E G SP
Sbjct: 61 TAT------ISG-LSPGVDYTITVYAWGEDSAGYMFMYSP 93
Score = 39.0 bits (91), Expect = 4e-04
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
L ISW+ ++ YY+I + + E + A + P +
Sbjct: 21 LLISWDA---PMSSSSVYYYRITYGETGGNSPVQEFTVP-YSSSTATISGLSP----GVD 72
Query: 461 YEVKVQAINDVGPGPESEVVTI 482
Y + V A + G I
Sbjct: 73 YTITVYAWGEDSAGYMFMYSPI 94
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 59.0 bits (143), Expect = 5e-11
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S P T P AP + + + W+ P E+ N Y++++
Sbjct: 1 GSSGSSGPVLTQ-TSEQAPSSAPRDVQARMLSSTTILVQWKE-P-EEPNGQIQGYRVYYT 57
Query: 428 KKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ + I + +P Y VKV A +G GP S + +
Sbjct: 58 MDPTQHVNNWMKHNVADSQITTIGNLVP----QKTYSVKVLAFTSIGDGPLSSDIQV 110
Score = 49.3 bits (118), Expect = 1e-07
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P VQ + T+ +QW + I Y++ + N +H +
Sbjct: 18 PSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQ- 76
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+I N LVP TY KV+A +G G SS
Sbjct: 77 ------ITTIGN-LVPQKTYSVKVLAFTSIGDGPLSSD 107
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 61.0 bits (148), Expect = 5e-11
Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 17/179 (9%)
Query: 87 KPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-- 142
K + E + G +VTI C EA ++ K+G+ + +
Sbjct: 5 KATLW---AEPGSVISRGNSVTIRCQGTLEAQ---EYRLVKEGSPEPWDTQNPLEPKNKA 58
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQ 199
I ++ +G Y C + G E L ++ Y + P + + N+
Sbjct: 59 RFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVT 118
Query: 200 LRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
L+C + +I T G + L+ TP+ L + + + C
Sbjct: 119 LQCGSRLR---FDRFILTEEGDHKLSWTLDSQLTPS-GQFQALFPVGPVTPSHRWMLRC 173
Score = 54.9 bits (132), Expect = 6e-09
Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 17/165 (10%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQD-NVLTIRYLNPERDPAMYQCRA 68
C+ + Y + G P + Q+ ++ +I + Y+C
Sbjct: 25 RCQG-TLEAQEYRLVKEGS-----PEPWDTQNPLEPKNKARFSIPSMTEH-HAGRYRCYY 77
Query: 69 KNQLKTRYSSAQLRVLTLKPSFKKRPL--ESETYAGEGGNVTIFCNPEAAPKPKFVWKKD 126
+ S L L + + K L G NVT+ C +F+ ++
Sbjct: 78 YSPAGWSEPSDPLE-LVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF-DRFILTEE 135
Query: 127 GNIIGSGGRRKIFENG-----NLLISPVSRDDSGIYSCTATNVHG 166
G+ S + PV+ + C + H
Sbjct: 136 GDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180
Score = 29.5 bits (66), Expect = 2.1
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 15/86 (17%)
Query: 188 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
K T+ A ++ +RC E Y G + + + + P +
Sbjct: 4 SKATLWAEPGSVISRGNSVTIRCQGTLE---AQEYRLVKEG----SPEPWDTQNPLEPKN 56
Query: 240 GGLLEITNASFADAGEYECVVKSTVG 265
I + + AG Y C S G
Sbjct: 57 KARFSIPSMTEHHAGRYRCYYYSPAG 82
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 58.2 bits (141), Expect = 7e-11
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 10/109 (9%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P ++V +S ++ W + Y++ +
Sbjct: 5 SSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEV--------KYHEKGAEGPSSV 56
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPAD 384
T A + L ++Y +V A +E GYG T D
Sbjct: 57 RFLKTSENRAELRG-LKRGASYLVQVRARSEAGYGPFGQEH-HSQTQLD 103
Score = 49.0 bits (117), Expect = 1e-07
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
+ + P A S I LS++W P + + Y++ + +K S
Sbjct: 3 SGSSGP-PAVSDIRVTRSSPSSLSLAWAV-P-RAPSGAVLDYEVKYHEKGAEGPSSVR-- 57
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ + Y V+V+A ++ G GP +
Sbjct: 58 -FLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHS 98
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 58.2 bits (141), Expect = 7e-11
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
+P ++VV+ TS I W ++ + + +Y+I T+ +E
Sbjct: 7 VSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRI--------TYGETGGDSPVQEFT 58
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP--SPQYNT 381
A+I L P Y V A + G + S Y T
Sbjct: 59 VPGYYSTATISG-LKPGVDYTITVYAYDTFFPGYEPNSPISINYRT 103
Score = 41.7 bits (98), Expect = 4e-05
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKN-DTEFQSETLKEYGNVGIAVVR--IPSEFYYT 459
L ISW+ YY+I + + D+ Q T+ G A + P
Sbjct: 24 LKISWDAYYSS--WQNVKYYRITYGETGGDSPVQEFTVP--GYYSTATISGLKP----GV 75
Query: 460 EYEVKVQAINDVGPGPE-SEVVTI 482
+Y + V A + PG E + ++I
Sbjct: 76 DYTITVYAYDTFFPGYEPNSPISI 99
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 58.6 bits (142), Expect = 7e-11
Identities = 20/111 (18%), Positives = 29/111 (26%), Gaps = 12/111 (10%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P P + V + WT + Y I + + +
Sbjct: 15 SQVPDQPSSLHV-RPQTNCIIMSWTPPLNPNIVVRGYII----GYGVGSPYAETVRVDSK 69
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
Y+ IE L S Y + A N G G P S + P
Sbjct: 70 QRYYS------IER-LESSSHYVISLKAFNNAGEGVPLYESATTRSITSGP 113
Score = 40.1 bits (94), Expect = 2e-04
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 23/121 (19%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS----ISWEPLPREKQNAPNIYYK 423
G S P + P PS + + + +SW P P N Y
Sbjct: 1 GSSGSSGPE-NDLDESQVP-DQPSSL-----HVRPQTNCIIMSWTP-PLN-PNIVVRGYI 51
Query: 424 IFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPG-PESEVV 480
I + + ET++ + + Y + ++A N+ G G P E
Sbjct: 52 IGYGVGSPYA---ETVRVDSKQRYYSIERLES----SSHYVISLKAFNNAGEGVPLYESA 104
Query: 481 T 481
T
Sbjct: 105 T 105
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 57.7 bits (140), Expect = 1e-10
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 93 RPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSG--GRRKIFENGN---LLIS 147
+ LE T A G V + C + W K+G I G R +I G L+I
Sbjct: 12 KQLEDTT-AYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 69
Query: 148 PVSRDDSGIYSCTATNVHGMDESKGRLIV 176
++ D+ YS T +S +L V
Sbjct: 70 GATKADAAEYSVMTTG----GQSSAKLSV 94
Score = 44.2 bits (105), Expect = 5e-06
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 216 WTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYECVVKSTVGKISTKTTV 273
W NG I + I ++G L I A+ ADA EY + + +
Sbjct: 40 WFKNGEEIIPGPKSRYR---IRVEGKKHILIIEGATKADAAEYSVM----TTGGQSSAKL 92
Query: 274 IVEGPPGLPGG 284
V+ G G
Sbjct: 93 SVDLKSGPSSG 103
Score = 41.9 bits (99), Expect = 3e-05
Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN----VLTIRYLNPERDPAMYQ 65
CE D WF+NGE + + RY I+ +L I D A Y
Sbjct: 28 ECEVSE-DDANVKWFKNGEEIIP-----GPKSRYRIRVEGKKHILIIEGATKA-DAAEYS 80
Query: 66 CRAKNQLKTRYSSAQLRV 83
SSA+L V
Sbjct: 81 VMTTGG----QSSAKLSV 94
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 59.8 bits (145), Expect = 1e-10
Identities = 21/161 (13%), Positives = 51/161 (31%), Gaps = 11/161 (6%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE--NGNLLISPVSRDDSGIYSCT 160
G +VTI+C ++ K+ + + + I ++ D +G Y C
Sbjct: 18 WGNSVTIWCQG-TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCY 76
Query: 161 ATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWT 217
+ G + L ++ +Y + P + + +++ L C + + ++
Sbjct: 77 YRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP---MDTFLLC 133
Query: 218 HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
+ L ++ + G Y C
Sbjct: 134 KERAAHPLLCLR--SEHGAQQHQAEFPMSPVTSVHGGTYRC 172
Score = 59.5 bits (144), Expect = 2e-10
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 20/165 (12%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNV-LTIRYLNPERDPAMYQCRA 68
C+ + Y + P + Q+ ++ +I + + Y+C
Sbjct: 25 WCQG-TLEAREYRLDKEES-----PAPWDRQNPLEPKNKARFSIPSMTED-YAGRYRCYY 77
Query: 69 KNQLKTRYSSAQLRVLTL----KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
++ + S L ++ KP+ P G +VT+ C + P F+
Sbjct: 78 RSPVGWSQPSDPLELVMTGAYSKPTLSALP---SPLVTSGKSVTLLCQSRS-PMDTFLLC 133
Query: 125 KDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYSCTATNVH 165
K+ R +SPV+ G Y C +++
Sbjct: 134 KERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGF 178
Score = 30.6 bits (69), Expect = 0.96
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 17/105 (16%)
Query: 188 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
PK T+ A ++ + C E Y + + + P +
Sbjct: 4 PKPTLWAEPGSVISWGNSVTIWCQGTLE---AREYRLDKEE----SPAPWDRQNPLEPKN 56
Query: 240 GGLLEITNASFADAGEYECVVKSTVG--KISTKTTVIVEGPPGLP 282
I + + AG Y C +S VG + S +++ G P
Sbjct: 57 KARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKP 101
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 59.4 bits (144), Expect = 2e-10
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 85 TL-KPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFEN 141
TL KP E + VTI C N A ++ +G++ +
Sbjct: 1 TLPKPFIW---AEPHFMVPKEKQVTICCQGNYGAV---EYQLHFEGSLFAVDRPKPPERI 54
Query: 142 --GNLLISPVSRDDSGIYSCTATNVHGMDE-SKGRLIVLHGPSYYEQL--PPKITIAAHR 196
I ++ +G YSC E S +V+ L P + +
Sbjct: 55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE 114
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
+ C T ++ G + ++ + + A G Y
Sbjct: 115 KVTFYCRLDTA---TSMFLLLKEG------RSSHVQRGY-GKVQAEFPLGPVTTAHRGTY 164
Query: 257 EC 258
C
Sbjct: 165 RC 166
Score = 53.3 bits (128), Expect = 2e-08
Identities = 27/151 (17%), Positives = 42/151 (27%), Gaps = 12/151 (7%)
Query: 16 VPDVTYSWFRNGELLNSETL-PLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74
V Y G L + P E ++ I +N Y C +
Sbjct: 29 YGAVEYQLHFEGSLFAVDRPKPPERINK-----VKFYIPDMNSR-MAGQYSCIYRVGELW 82
Query: 75 RYSSAQLRVLTLKPSFKKRPLES--ETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS 132
S L L + + L G VT +C + A F+ K+G
Sbjct: 83 SEPSNLLD-LVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTAT-SMFLLLKEGRSSHV 140
Query: 133 GGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
+ + PV+ G Y C +
Sbjct: 141 QRGYGKVQ-AEFPLGPVTTAHRGTYRCFGSY 170
Score = 30.6 bits (69), Expect = 0.81
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 15/86 (17%)
Query: 188 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
PK I A + + + C + V Y G E N
Sbjct: 3 PKPFIWAEPHFMVPKEKQVTICCQGNYG---AVEYQLHFEGSLFAVDRPKPPERINKVK- 58
Query: 240 GGLLEITNASFADAGEYECVVKSTVG 265
I + + AG+Y C+ +
Sbjct: 59 ---FYIPDMNSRMAGQYSCIYRVGEL 81
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 57.0 bits (138), Expect = 2e-10
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P ++V + T+A + W PI + + + + + + T
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPIL---PIEGILVTFGRKNDPSDETTVD--LTSSITSLT- 58
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ N L P +TYE +++A N Y P S +
Sbjct: 59 -----LTN-LEPNTTYEIRIVARNGQQYSPPVSTT 87
Score = 33.5 bits (77), Expect = 0.032
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
++W+P P P + + +KND T+ ++ + P T
Sbjct: 18 AVVTWQP-PI----LPIEGILVTFGRKNDPS-DETTVDLTSSITSLTLTNLEP----NTT 67
Query: 461 YEVKVQAINDVGPGPESEVV 480
YE+++ A N P
Sbjct: 68 YEIRIVARNGQQYSPPVSTT 87
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 59.8 bits (144), Expect = 2e-10
Identities = 29/206 (14%), Positives = 58/206 (28%), Gaps = 12/206 (5%)
Query: 278 PPGLPGGVQ-VVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
PP P + ++ + S QW G P + R+ + + + +
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYG--EPSSPSPQYNTPADKPY--QAPSR 392
+ L+ + V A N LG P + P
Sbjct: 64 RQNNCSIPRKN---LLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIG 120
Query: 393 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 452
+ G L +SW+P ++ ++ + + TL + +
Sbjct: 121 PDVVSHQPGCLWLSWKPWKP--SEYMEQECELRYQPQLKGA--NWTLVFHLPSSKDQFEL 176
Query: 453 PSEFYYTEYEVKVQAINDVGPGPESE 478
Y ++++ I PG S
Sbjct: 177 CGLHQAPVYTLQMRCIRSSLPGFWSP 202
Score = 41.7 bits (97), Expect = 2e-04
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 8/99 (8%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
L G VV + W + ++ + + + H+
Sbjct: 115 QALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSS---- 170
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP 377
+ + + L Y ++ G S SP
Sbjct: 171 ---KDQFELCG-LHQAPVYTLQMRCIRSSLPGFWSPWSP 205
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 57.0 bits (138), Expect = 2e-10
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
Query: 268 STKTTVIV-EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFN 326
S VI G PG P + +TS + WT + I +Y+++ + +
Sbjct: 6 SGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPR-SD-TIANYELVYKDGEHGEEQR 63
Query: 327 VSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
++ ++ T ++ L P S Y F++ A + G G ++ + P
Sbjct: 64 IT-------IEPGT---SYRLQG-LKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGP 112
Score = 48.9 bits (117), Expect = 2e-07
Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 25/122 (20%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S Q T P P + +SW P P ++ Y++ ++
Sbjct: 1 GSSGSSGDI-QVITQTGVP-GQPLNFKAEPESETSILLSWTP-P---RSDTIANYELVYK 54
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFY-------YTEYEVKVQAINDVGPGPESEVV 480
E Q T++ P Y + Y ++ A + G G + +
Sbjct: 55 DGEHGEEQRITIE------------PGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEI 102
Query: 481 TI 482
+
Sbjct: 103 SA 104
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 56.7 bits (137), Expect = 2e-10
Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P + V S T+ W I Y+I ++ + +
Sbjct: 5 SSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSM------- 57
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ A I+ L P Y +V A GYG+ S
Sbjct: 58 --ARSQTNTARIDG-LRPGMVYVVQVRARTVAGYGKFSGK 94
Score = 48.6 bits (116), Expect = 2e-07
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
+++SW P E+ N + Y+I + +K EF S + A + P
Sbjct: 24 ITLSWPQ-P-EQPNGIILDYEIRYYEKEHNEFNSSMAR--SQTNTARIDGLRP----GMV 75
Query: 461 YEVKVQAINDVGPGPESEVVTI 482
Y V+V+A G G S +
Sbjct: 76 YVVQVRARTVAGYGKFSGKMCF 97
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 57.1 bits (138), Expect = 3e-10
Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 13/126 (10%)
Query: 262 STVGKISTKTTVIVEG-PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNW 320
+ T + + E P +P + V TS + WT + Y I
Sbjct: 10 TDWLSAETFESDLDETRVPEVPSSLHV-RPLVTSIVVSWTPPENQNIVVRGYAI------ 62
Query: 321 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 380
+ S H +VD + +IEN L P S Y + A N +G G P S
Sbjct: 63 --GYGIGSPHAQTIKVDYKQ--RYYTIEN-LDPSSHYVITLKAFNNVGEGIPLYESAVTR 117
Query: 381 TPADKP 386
P
Sbjct: 118 PHTSGP 123
Score = 44.8 bits (106), Expect = 6e-06
Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 39/143 (27%)
Query: 364 GNELGYGEPSSPSPQYNTPADKPYQ-----APSRIGGGGGKIGDLS----ISWEPLPREK 414
G+ G P++ T + PS + + L +SW P P E
Sbjct: 1 GSSGSSG-PATDWLSAETFESDLDETRVPEVPSSL-----HVRPLVTSIVVSWTP-P-EN 52
Query: 415 QNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYY--------TEYEVKVQ 466
QN Y I + Q+ + + YY + Y + ++
Sbjct: 53 QNIVVRGYAIGYGI-GSPHAQTIKVD------------YKQRYYTIENLDPSSHYVITLK 99
Query: 467 AINDVGPG-PESEVVTIWHDPLV 488
A N+VG G P E
Sbjct: 100 AFNNVGEGIPLYESAVTRPHTSG 122
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 59.1 bits (142), Expect = 3e-10
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 6/119 (5%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPE-AAPKPKFVWKKDGNIIGSGGRRKIFENGNLLI 146
+ P E G + + C A W+ +G+ L +
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--GRSVLTV 63
Query: 147 SPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAH 205
S +G C + + +L+V P QL + ++ C+AH
Sbjct: 64 RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFP---NQLTVSPAALVPGDPEVACTAH 119
Score = 38.0 bits (87), Expect = 0.004
Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 12/126 (9%)
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243
E P + +A + QL C + W +G + + +L
Sbjct: 11 EPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQSDT--------GRSVL 61
Query: 244 EITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA 303
+ NAS + AG CV ++V P V + + T A
Sbjct: 62 TVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQL-TVSPAALVPGDPEVACT--A 118
Query: 304 TNGRPI 309
P+
Sbjct: 119 HKVTPV 124
Score = 35.6 bits (81), Expect = 0.021
Identities = 27/186 (14%), Positives = 42/186 (22%), Gaps = 38/186 (20%)
Query: 10 TCEAFGVPDV-TYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
TC + W L + + +VLT+R + C
Sbjct: 28 TCRLACADRGASVQWRGLDTSLGAV--------QSDTGRSVLTVRNASLS-AAGTRVCVG 78
Query: 69 KNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-----PEAAPKPKFVW 123
+T + QL V P G+ + C P F
Sbjct: 79 SCGGRTFQHTVQLLVYAFPNQLTVSPAAL-----VPGDPEVACTAHKVTPVDPNALSFSL 133
Query: 124 KKDGNIIGS----------------GGRRKIFENGNLLISPVSRDDSG-IYSCTAT-NVH 165
G + G +F P C AT +
Sbjct: 134 LVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLP 193
Query: 166 GMDESK 171
G++ S
Sbjct: 194 GLELSH 199
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 56.5 bits (136), Expect = 5e-10
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 8/116 (6%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
PP + ++ + T+ W + I+ Y++ F + + +
Sbjct: 17 NPPSIR--EELCTASHDTITVHWISD--DEFSISSYELQYTIFTGQANFISLYNSVDSWM 72
Query: 337 DRYTGRK-EASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
++ ++ L + Y F V A N+ G + T + PS
Sbjct: 73 IVPNIKQNHYTVHG-LQSGTRYIFIVKAINQAGSRNSEPTRLK--TNSQPFKSGPS 125
Score = 33.0 bits (75), Expect = 0.073
Identities = 12/85 (14%), Positives = 21/85 (24%), Gaps = 12/85 (14%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
+++ W Y++ + + + V I Y
Sbjct: 33 ITVHWIS----DDEFSISSYELQYTIFTGQANFISLYNSVDSW-MIVPNIKQNHYTVHGL 87
Query: 458 --YTEYEVKVQAINDVGPGPESEVV 480
T Y V+AIN G
Sbjct: 88 QSGTRYIFIVKAINQAGSRNSEPTR 112
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 56.1 bits (135), Expect = 9e-10
Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 21/141 (14%)
Query: 265 GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT---------DGATNGRPITHYKII 315
G + T E ++ + + W+ ++ + Y+++
Sbjct: 4 GSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVL 63
Query: 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
+ + +G+E ++ + L P Y KV A G PS
Sbjct: 64 ISSTGKDGKY--KSVYVGEET-------NITLND-LKPAMDYHAKVQAEYNSIKGTPSEA 113
Query: 376 SPQYNTPADKP-YQAPSRIGG 395
+ T + +P P RI G
Sbjct: 114 E-IFTTLSCEPDIPNPPRISG 133
Score = 37.3 bits (86), Expect = 0.002
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 11/87 (12%)
Query: 403 LSISWEPLPR-------EKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSE 455
+ ++W P E Y++ K + +
Sbjct: 34 VVLTWSPPSSLINGETDESSVPELYGYEVLISSTGK----DGKYKSVYVGEETNITLNDL 89
Query: 456 FYYTEYEVKVQAINDVGPGPESEVVTI 482
+Y KVQA + G SE
Sbjct: 90 KPAMDYHAKVQAEYNSIKGTPSEAEIF 116
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 54.7 bits (132), Expect = 1e-09
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 14/114 (12%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P + +V +A + W RP+ ++ ++ E
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAP---RPVRLVRVTYVSSEGGHSGQT-------EAP 56
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
A + L +TY +V G + A P PS
Sbjct: 57 G--NATSAMLGP-LSSSTTYTVRVTCLYPGGGSSTLTGRVT-TKKAPSPSSGPS 106
Score = 37.0 bits (86), Expect = 0.002
Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 13/80 (16%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
+ WE P P ++ + GN A++ T
Sbjct: 24 ARVFWEGAP-----RPVRLVRVTYVSSEGGHSGQTEAP--GNATSAMLGPLSS----STT 72
Query: 461 YEVKVQAINDVGPGPESEVV 480
Y V+V + G
Sbjct: 73 YTVRVTCLYPGGGSSTLTGR 92
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 55.3 bits (133), Expect = 1e-09
Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 12/109 (11%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
+ +P ++VV TS I W A + +Y+I ++ V
Sbjct: 18 KGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPAV---TVRYYRITYGETGGNSP--V 72
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
E + T I L P Y V A L S
Sbjct: 73 QEFTVPGSKSTAT------ISG-LKPGVDYTITVYAVTGLRLMLAGSKP 114
Score = 32.6 bits (74), Expect = 0.090
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
L ISW+ P YY+I + + E G+ A + P +
Sbjct: 45 LLISWDA-P----AVTVRYYRITYGETGGNSPVQE-FTVPGSKSTATISGLKP----GVD 94
Query: 461 YEVKVQAINDVGPG-PESEVVTI 482
Y + V A+ + S+ ++I
Sbjct: 95 YTITVYAVTGLRLMLAGSKPISI 117
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 54.7 bits (132), Expect = 1e-09
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
+ P ++ +TS ++ W + NG I Y+I + + S
Sbjct: 8 QAAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEK-DKEMQSYS------ 59
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
A++ L P + Y F+V A G G S
Sbjct: 60 --TLKAVTTRATVSG-LKPGTRYVFQVRARTSAGCGRFSQA 97
Score = 46.2 bits (110), Expect = 1e-06
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
+ P I +S+ W+ P E+ N + Y+I + +K+ TLK
Sbjct: 6 SGQAAP-SQVVVIRQERAGQTSVSLLWQE-P-EQPNGIILEYEIKYYEKDKEMQSYSTLK 62
Query: 441 EYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
A V P T Y +V+A G G S+ + +
Sbjct: 63 --AVTTRATVSGLKP----GTRYVFQVRARTSAGCGRFSQAMEV 100
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 54.4 bits (131), Expect = 2e-09
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
E PG G + E+ TS + W + G NG +T Y+I +W +
Sbjct: 15 EDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRI--------SWEEYNRTNTRV 65
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
E + L +TY +V A G G+ S+ + P P
Sbjct: 66 THYLPNVTLEYRVTG-LTALTTYTIEVAAMTSKGQGQVSASTISSGVPPSGP 116
Score = 47.8 bits (114), Expect = 4e-07
Identities = 25/114 (21%), Positives = 37/114 (32%), Gaps = 7/114 (6%)
Query: 368 GYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR 427
G S P T D P + L +SW+ P ++N Y+I W
Sbjct: 1 GSSGSSGPQLVR-THEDVP-GPVGHLSFSEILDTSLKVSWQE-P-GEKNGILTGYRISWE 56
Query: 428 KKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVT 481
+ N T + Y R+ T Y ++V A+ G G S
Sbjct: 57 EYNRTN---TRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI 107
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 54.3 bits (130), Expect = 2e-09
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 16/103 (15%)
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKP--KFVWKKDGNII-----------GSGG 134
P +P A G +V+ C+ ++ F W D + + G
Sbjct: 11 PQITVQP--ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQG 68
Query: 135 RRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIV 176
+ L + V G Y C +N G S L +
Sbjct: 69 GELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 50.1 bits (119), Expect = 7e-08
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLN-----ELETPNINIDGG 241
P + ++ CSA + + + W + + + ++ + +
Sbjct: 17 PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTT 76
Query: 242 LLEITNASFADAGEYECVVKSTVGKI-STKTTVIV 275
+L + N F G Y+CV+ + G S + +
Sbjct: 77 ILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 44.7 bits (105), Expect = 5e-06
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 6 DLTWTCEAFGVPD--VTYSWFRNGELLNSETLP-----LEDQDRYFIQDNVLTIRYLNPE 58
D+++TC A D +T++W + E L + +L +R +
Sbjct: 27 DVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFT 86
Query: 59 RDPAMYQCRAKNQLKTRYSS-AQLRV 83
YQC N + YS A L +
Sbjct: 87 -SEGXYQCVISNHFGSSYSVXAXLTI 111
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 54.0 bits (130), Expect = 2e-09
Identities = 15/99 (15%), Positives = 24/99 (24%), Gaps = 12/99 (12%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P + + S + WT G + HY + +
Sbjct: 5 SSGRSPPSNLALASETPDSLQVSWT--PPLG-RVLHYWLTYAPASGLGP--EKSVSVPGA 59
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
T + + L + Y V A G E S
Sbjct: 60 RSHVT------LPD-LQAATKYRVLVSAIYAAGRSEAVS 91
Score = 35.5 bits (82), Expect = 0.007
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 12/81 (14%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
L +SW P ++Y + + + +++ G + T+
Sbjct: 24 LQVSWTP-----PLGRVLHYWLTYAPASGLG-PEKSVSVPGARSHVTLPDLQA----ATK 73
Query: 461 YEVKVQAINDVGPGPESEVVT 481
Y V V AI G
Sbjct: 74 YRVLVSAIYAAGRSEAVSATG 94
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 53.3 bits (128), Expect = 5e-09
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 16/109 (14%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLS-----ISWE--PLPREKQNAPNIYYKIFWRKKNDTE 433
+ + P P + + LS I+W LP+ ++ + YY + W+
Sbjct: 3 SGSSGPMMPPVGV-----QASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPAN 57
Query: 434 FQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ + N + T YE V S
Sbjct: 58 TKYKNA----NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHG 102
Score = 52.5 bits (126), Expect = 7e-09
Identities = 20/115 (17%), Positives = 33/115 (28%), Gaps = 15/115 (13%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNSTWFNVSEHV 331
GP P GVQ + + I W D + +Y + +TN + + +
Sbjct: 6 SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN- 64
Query: 332 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ L P + YEF V+ S + T
Sbjct: 65 --------ATTLSYLVTG-LKPNTLYEFSVMVTKGRRSSTWSMTAHGT-TFELSG 109
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 52.4 bits (126), Expect = 7e-09
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
+P ++VV TS I W A++ +++Y+I T+ + +E
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWD--ASSS-SVSYYRI--------TYGETGGNSPVQEFT 52
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
A+I L P Y V A S
Sbjct: 53 VPGSSSTATISG-LSPGVDYTITVYAYYSYYDLYYSYS 89
Score = 36.2 bits (84), Expect = 0.003
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 13/83 (15%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
L ISW+ + YY+I + + + G+ A + P +
Sbjct: 21 LLISWDASS-----SSVSYYRITYGETGGNS-PVQEFTVPGSSSTATISGLSP----GVD 70
Query: 461 YEVKVQAINDVGPGPE-SEVVTI 482
Y + V A +I
Sbjct: 71 YTITVYAYYSYYDLYYSYSPSSI 93
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 54.4 bits (131), Expect = 8e-09
Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 25/183 (13%)
Query: 79 AQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKI 138
Q L KPS + + VT+ C + +K + +
Sbjct: 1 GQSGPLP-KPSLQ---ALPSSLVPLEKPVTLRCQGPP-GVDLYRLEKLSS-------SRY 48
Query: 139 FENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE---QLPPKITIAAH 195
+ L I + R +G Y C+ N +L ++ + + P +++
Sbjct: 49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSG 108
Query: 196 RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 255
++ L+C + G D + P I + A +G
Sbjct: 109 GDVTLQCQTRYG---FDQFALYKEG------DPAPYKNPE-RWYRASFPIITVTAAHSGT 158
Query: 256 YEC 258
Y C
Sbjct: 159 YRC 161
Score = 51.4 bits (123), Expect = 9e-08
Identities = 29/159 (18%), Positives = 47/159 (29%), Gaps = 20/159 (12%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69
C+ Y + + VL I + Y+C +
Sbjct: 28 RCQG-PPGVDLYRLEKLSSSRYQDQ-------------AVLFIPAMKRS-LAGRYRCSYQ 72
Query: 70 NQLKTRYSSAQLRVLTLKPSFKKRPL--ESETYAGEGGNVTIFCNPEAAPKPKFVWKKDG 127
N S QL L F K L + GG+VT+ C +F K+G
Sbjct: 73 NGSLWSLPSDQL-ELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRY-GFDQFALYKEG 130
Query: 128 NIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
+ + + + I V+ SG Y C + +
Sbjct: 131 DPAPYKNPERWYR-ASFPIITVTAAHSGTYRCYSFSSRD 168
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 52.4 bits (126), Expect = 8e-09
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 14/102 (13%)
Query: 276 EGPPGLPGGVQVV--EVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG 333
P P +Q+ + W I Y + + + W +
Sbjct: 5 SSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQR----- 59
Query: 334 KEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
I+N L+ + Y +V A G G S
Sbjct: 60 ------AASNFTEIKN-LLVNTLYTVRVAAVTSRGIGNWSDS 94
Score = 49.4 bits (118), Expect = 1e-07
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSI--SWEPLPREKQNAPNIYYKIFWRKKNDTEFQSET 438
+ + P AP + + + I W P P + Y + + + + S+
Sbjct: 3 SGSSGP-DAPRNLQLSLPREAEGVIVGHWAP-P-IHTHGLIREYIVEYSRSGSKMWASQR 59
Query: 439 LKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
I + T Y V+V A+ G G S+ +I
Sbjct: 60 AAS------NFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSI 97
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 52.0 bits (125), Expect = 8e-09
Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P +QV V TS T+ WT + IT Y+I + E + T
Sbjct: 5 PTDLQVTNVTDTSITVSWT--PPSA-TITGYRITYTPSNGPGE--PKELTVPPSSTSVT- 58
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
I L P Y V A + P +
Sbjct: 59 -----ITG-LTPGVEYVVSVYALKDNQESPPLVGT 87
Score = 32.0 bits (73), Expect = 0.088
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
+++SW P +A Y+I + N + + L + + P E
Sbjct: 18 ITVSWTP-----PSATITGYRITYTPSNGPG-EPKELTVPPSSTSVTITGLTP----GVE 67
Query: 461 YEVKVQAINDVGPGPESEV 479
Y V V A+ D P
Sbjct: 68 YVVSVYALKDNQESPPLVG 86
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 52.6 bits (126), Expect = 1e-08
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 15/123 (12%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR----PITHYKIIARTNWNST 323
+ + P P GVQ V + + + W D + + Y + RT+++++
Sbjct: 8 FPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSAS 67
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
YT L P + YEF V+ S + T
Sbjct: 68 A---KYKSEDTTSLSYT------ATG-LKPNTMYEFSVMVTKNRRSSTWSMTAHAT-TYE 116
Query: 384 DKP 386
Sbjct: 117 ASG 119
Score = 47.9 bits (114), Expect = 4e-07
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 20/119 (16%)
Query: 373 SSPSPQYNTPADKPYQAPSRIGGGGGKIGDLS-----ISWEP--LPREKQNAPNIYYKIF 425
SS P P P + + L+ +SW +P+ ++ + Y +
Sbjct: 5 SSGFPTSVPDLSTPMLPPVGV-----QAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVR 59
Query: 426 WRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
WR + ++ P T YE V + S
Sbjct: 60 WRTSFSASAKYKSED--TTSLSYTATGLKP----NTMYEFSVMVTKNRRSSTWSMTAHA 112
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 54.5 bits (130), Expect = 1e-08
Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 25/171 (14%)
Query: 17 PDVTYSWFRNGELLNSETL----------PLEDQDRYFIQDNV------LTIRYLNPERD 60
P + WFR+GE+ + E Q R+ + +V L+I E D
Sbjct: 35 PPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARME-D 93
Query: 61 PAMYQCRAKNQLKTRYSSAQLRV-LTLKPSFKKRPLESETYAGEGGNVTIFC----NPEA 115
Y R + +YS Q ++ L + +K + G + C + EA
Sbjct: 94 TGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEA 153
Query: 116 APKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHG 166
P F W + + + L ++P D +C
Sbjct: 154 GPPLTFSWTGNALSPLDP---ETTRSSELTLTPRPEDHGTNLTCQMKRQGA 201
Score = 46.8 bits (110), Expect = 4e-06
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 43/207 (20%)
Query: 103 EGGNVTIFC-------NPEAAPKPKFVWKKDGNIIGSG-----------------GRRKI 138
EG V + C + ++P W +DG I GR ++
Sbjct: 14 EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL 73
Query: 139 F-----ENGNLLISPVSRDDSGIYSC---TATNVHGMDESKGRLIVLHGPSYYEQLPPKI 190
+N +L I +D+G Y +V + + + +
Sbjct: 74 LGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE 133
Query: 191 TIAAHRNLQLRCSAHT--EELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNA 248
+ + R +L CS E + + WT N + L +T
Sbjct: 134 PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS---------PLDPETTRSSELTLTPR 184
Query: 249 SFADAGEYECVVKSTVGKISTKTTVIV 275
C +K +++T+ TV +
Sbjct: 185 PEDHGTNLTCQMKRQGAQVTTERTVQL 211
Score = 32.9 bits (74), Expect = 0.15
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 10/76 (13%)
Query: 8 TWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCR 67
+ P +T+SW N LT+ PE C+
Sbjct: 146 SLPGSCEAGPPLTFSWTGNALSPLDPETTRSS---------ELTLT-PRPEDHGTNLTCQ 195
Query: 68 AKNQLKTRYSSAQLRV 83
K Q + +++
Sbjct: 196 MKRQGAQVTTERTVQL 211
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 54.2 bits (130), Expect = 2e-08
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 25/207 (12%)
Query: 16 VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTR 75
V + R G+ ++ L E D +I + + Y+C
Sbjct: 32 VRFQHFLLHREGKFKDTLHLIGEHHDGVS--KANFSIGPMMQD-LAGTYRCYGSVTHSPY 88
Query: 76 YSSA-------QLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWKKDGN 128
SA + L KPS +P G +VT+ C+ + + ++G
Sbjct: 89 QLSAPSDPLDIVITGLYEKPSLSAQP---GPTVLAGESVTLSCSSRS-SYDMYHLSREGE 144
Query: 129 IIGSGGRRKIFENG----NLLISPVSRDDSGIYSCTATNVHGMDESKGR-----LIVLHG 179
NG + + P + G Y C + E + V
Sbjct: 145 AHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGN 202
Query: 180 PSYYEQLPPKITIAAHRNLQLRCSAHT 206
PS P + + L +A
Sbjct: 203 PSNSWPSPTEPSSETGNPRHLHAAAEQ 229
Score = 53.8 bits (129), Expect = 3e-08
Identities = 29/168 (17%), Positives = 49/168 (29%), Gaps = 22/168 (13%)
Query: 103 EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGI 156
V + C + F+ ++G + +G N I P+ +D +G
Sbjct: 20 SEETVILQCWSDVRFQ---HFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGT 76
Query: 157 YSCTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELL 210
Y C + H + S IV+ G L P T+ A ++ L CS+ +
Sbjct: 77 YRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSS--- 133
Query: 211 DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
Y + G + G Y C
Sbjct: 134 YDMYHLSREGEAHERRFSA----GPKVNGTFQADFPLGPATHGGTYRC 177
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 50.9 bits (122), Expect = 2e-08
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 14/105 (13%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P ++V +V T+A I W + P+ +++ +D
Sbjct: 6 PSQIEVKDVTDTTALITWM--PPSQ-PVDGFELTYGIKDVPGDR--------TTIDLTED 54
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
+ SI N L P + YE +I+ P+ + + T
Sbjct: 55 ENQYSIGN-LKPDTEYEVSLISRRGDMSSNPAKET--FTTGLAAA 96
Score = 29.7 bits (67), Expect = 0.67
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 13/82 (15%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
I+W P P + P +++ + K+ T+ + + P TE
Sbjct: 19 ALITWMP-P----SQPVDGFELTYGIKDVPG-DRTTIDLTEDENQYSIGNLKP----DTE 68
Query: 461 YEVKVQAINDVGPG-PESEVVT 481
YEV + + P E T
Sbjct: 69 YEVSLISRRGDMSSNPAKETFT 90
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 55.0 bits (131), Expect = 3e-08
Identities = 28/248 (11%), Positives = 63/248 (25%), Gaps = 22/248 (8%)
Query: 254 GEYECVVKSTVGKIS----TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI 309
E + +++ S + P V + E + I + G +
Sbjct: 76 EEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHL-EAEDKAIVIHISPGTKDSVMW 134
Query: 310 THYKI-----IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAG 364
+ + +S E++ + L P +TY KV A
Sbjct: 135 ALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYK-----------LSPETTYCLKVKAA 183
Query: 365 NELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKI 424
+ + P + + + W+ +
Sbjct: 184 LLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAF 243
Query: 425 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF-YYTEYEVKVQAINDVGPGPESEVVTIW 483
R + ++ + + + NV P Y ++VQA + SE +
Sbjct: 244 LKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFD 303
Query: 484 HDPLVIIS 491
+ +
Sbjct: 304 TEIQAFLL 311
Score = 50.0 bits (118), Expect = 1e-06
Identities = 37/318 (11%), Positives = 76/318 (23%), Gaps = 42/318 (13%)
Query: 187 PPKITIAAH-RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL--NELETPNINIDGGLL 243
PP++ + A + + + S T++ + +W +G+ + I+
Sbjct: 108 PPEVHLEAEDKAIVIHISPGTKD----SVMWALDGLSFTYSLVIWKNSSGVEERIENIYS 163
Query: 244 EITNASFADAGEYECVVKSTV-------GKISTKTTVIVEGPPGLPGGVQVVEVHKTSAT 296
+ Y VK+ + P V V +
Sbjct: 164 RHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV 223
Query: 297 IQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWST 356
++W N + + +
Sbjct: 224 LKWDYTYANMTFQVQWLHAFLKRNPGNH---LYKWKQIPDCENVKTTQCVFPQNVFQKGI 280
Query: 357 YEFKVIAGNELGYGEPS---SPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPRE 413
Y +V A + S + P + I P++
Sbjct: 281 YLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDS------FHIYIGA-PKQ 333
Query: 414 KQNAP-----NIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAI 468
N P + Y+I + + + K+ V +P+ T Y VK +A
Sbjct: 334 SGNTPVIQDYPLIYEIIFWENTSNAERKIIEKKTD------VTVPNLKPLTVYCVKARAH 387
Query: 469 NDVG----PGPESEVVTI 482
S+ V
Sbjct: 388 TMDEKLNKSSVFSDAVCE 405
Score = 36.9 bits (84), Expect = 0.012
Identities = 23/212 (10%), Positives = 50/212 (23%), Gaps = 20/212 (9%)
Query: 277 GPPGL--PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
G L P V+V + + ++W + +T + + W +S
Sbjct: 4 GSKNLKSPQKVEVDII-DDNFILRWNRSDESVGNVT-FSFDYQKTGMDNWIKLSG----- 56
Query: 335 EVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSR-- 392
T K L + + ++ A E + P
Sbjct: 57 -CQNITSTKCNFSSLKLNVYEEIKLRIRA--EKENTSSWYEVDSFTPFRKAQIGPPEVHL 113
Query: 393 IGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRI 452
+ +S + + + Y + K + + + +
Sbjct: 114 EAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLS-- 171
Query: 453 PSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484
T Y +KV+A
Sbjct: 172 ----PETTYCLKVKAALLTSWKIGVYSPVHCI 199
Score = 31.1 bits (69), Expect = 0.85
Identities = 24/146 (16%), Positives = 40/146 (27%), Gaps = 25/146 (17%)
Query: 254 GEYECVVKSTVG----KISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPI 309
G Y V+++ G S + E L V + S I +G
Sbjct: 279 GIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTP 338
Query: 310 T------HYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIA 363
Y+II N ++ + + + ++ N L P + Y K A
Sbjct: 339 VIQDYPLIYEIIFWENTSNAERKII-----------EKKTDVTVPN-LKPLTVYCVKARA 386
Query: 364 GNELG-YGEPSSPSPQ--YNTPADKP 386
+ S S T
Sbjct: 387 HTMDEKLNKSSVFSDAVCEKTKPGNT 412
Score = 28.8 bits (63), Expect = 4.7
Identities = 8/81 (9%), Positives = 25/81 (30%), Gaps = 4/81 (4%)
Query: 405 ISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVK 464
+ W ++ N+ + ++K + + + Y E +++
Sbjct: 25 LRWNRSD---ESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLR 81
Query: 465 VQAINDVGPGPESEVVTIWHD 485
++A + EV +
Sbjct: 82 IRAEKE-NTSSWYEVDSFTPF 101
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 50.6 bits (121), Expect = 3e-08
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG------------NLLISPVS 150
EGG + C + W +K + ++ +S VS
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVS 79
Query: 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGP 180
D G Y+C+ + SK L VL P
Sbjct: 80 LSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
Score = 45.2 bits (107), Expect = 2e-06
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 177 LHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN- 235
+ G L +T+ L C + + W++ + D + N
Sbjct: 3 VKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQ--WSNPAQQTLYFDDKKALRDNR 60
Query: 236 ---INIDGG--LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ + +++ S +D G+Y C + T+ ++K + V G P
Sbjct: 61 IELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 53.2 bits (127), Expect = 3e-08
Identities = 29/167 (17%), Positives = 47/167 (28%), Gaps = 13/167 (7%)
Query: 7 LTWTCEAFGVPDVTYSWFRNGELLNSETLPLE-DQDRYFIQDNVLTIRYLNPERDPAMYQ 65
LTW + + S+ L + ++D L + L E D Y
Sbjct: 36 LTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVE-DEGSYT 94
Query: 66 CRAKNQ-LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPKFVW 123
C +R LRVL KP + C P + W
Sbjct: 95 CLFVTFPQGSRSVDIWLRVLA-KPQ--NTAEVQKVQLTGEPVPMARCVSTGGRPPAQITW 151
Query: 124 KKDGNIIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNV 164
D + + F +G ++ P S+ D +C +
Sbjct: 152 HSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHE 198
Score = 44.3 bits (104), Expect = 3e-05
Identities = 31/223 (13%), Positives = 59/223 (26%), Gaps = 51/223 (22%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKP-----KFVWKKDGN-----IIGSGGRRKIFE----- 140
++ G +VT+ C + + W + G + E
Sbjct: 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 65
Query: 141 -----------NGNLLISPVSRDDSGIYSCT-ATNVHGMDESKGRLIVLHGPSYYEQLPP 188
+ +L + + +D G Y+C T G L VL P +
Sbjct: 66 FVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE-VQ 124
Query: 189 KITIAAHRNLQLRCSAHTEELLDVAY-----IWTHNGVRIGNMDLNELETPNINIDG--- 240
K+ + RC + W + + + + G
Sbjct: 125 KVQLTGEPVPMARCVSTG------GRPPAQITWHSDLGGM-----PQTSQVPGFLSGTVT 173
Query: 241 --GLLEITNASFADAGEYECVVK--STVGKISTKTTVIVEGPP 279
L + +S D + C V+ S ++ V P
Sbjct: 174 VTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPH 216
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 54.4 bits (130), Expect = 4e-08
Identities = 24/216 (11%), Positives = 51/216 (23%), Gaps = 24/216 (11%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P + V + W G T+Y + +++
Sbjct: 136 PETXVQDMDCVYYNWQYLLCSWKPGIGVLLD-TNYNLFYWYEGLDHALQCVDYI-----K 189
Query: 338 RYTGRKEASIENV-LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 396
+ + + V +E S + P +
Sbjct: 190 ADGQNIGCRFPYLEASDYKDFYICVNGSSENKPI--RSSYFTFQLQNIVKPLPPVYLTFT 247
Query: 397 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 456
++ + W P A Y+I R+ + T + E + +
Sbjct: 248 RESSCEIKLKWSI-PLGPIPARCFDYEIEIREDDTTLVTATVENE-------TYTLKTTN 299
Query: 457 YYTEYEVKVQAINDVGP---GPESEVVTIWHDPLVI 489
+ V++ ++ G SE W D
Sbjct: 300 ETRQLCFVVRSKVNIYCSDDGIWSE----WSDKQCW 331
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 52.1 bits (125), Expect = 5e-08
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 15/165 (9%)
Query: 103 EGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRR--KIFENGNLLISPVSRDDSGIYS 158
+G VT+ C E ++ ++ R ++ + G I ++ + +G Y
Sbjct: 18 QGSPVTLRCQGGQETQ---EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYR 74
Query: 159 CTATNVHGM--DESKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDVAY 214
C + + S +V+ G L P + + N+ L+C + +
Sbjct: 75 CYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA---FDGF 131
Query: 215 IWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECV 259
I G LN + + S + Y C
Sbjct: 132 ILCKEGEDEHPQCLNSQPHAR-GSSRAIFSVGPVSPSRRWWYRCY 175
Score = 47.9 bits (114), Expect = 2e-06
Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 22/167 (13%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSET-LPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRA 68
C+ G Y +R + T +P E + I + E Y+C
Sbjct: 25 RCQG-GQETQEYRLYREKKTAPWITRIPQELVKK-----GQFPIPSITWE-HTGRYRCYY 77
Query: 69 KNQLKTRY-SSAQLRVLTL----KPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVW 123
+ R SS L ++ KP+ +P GGNVT+ C+ F+
Sbjct: 78 GSDTAGRSESSDPLELVVTGAYIKPTLSAQP---SPVVNSGGNVTLQCD-SQVAFDGFIL 133
Query: 124 KKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGIYSCTATNVH 165
K+G + PVS Y C A + +
Sbjct: 134 CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSN 180
Score = 30.2 bits (68), Expect = 1.1
Identities = 16/89 (17%), Positives = 22/89 (24%), Gaps = 15/89 (16%)
Query: 188 PKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINID 239
PK T+ A + LRC E Y + E
Sbjct: 4 PKPTLWAEPGSVITQGSPVTLRCQGGQE---TQEYRLYREKKTAPWITRIPQELVKKGQ- 59
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKIS 268
I + ++ G Y C S S
Sbjct: 60 ---FPIPSITWEHTGRYRCYYGSDTAGRS 85
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 51.7 bits (123), Expect = 1e-07
Identities = 25/200 (12%), Positives = 56/200 (28%), Gaps = 10/200 (5%)
Query: 271 TTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEH 330
+ G P + + + + WTD +G + ++
Sbjct: 22 NPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFY--TRRNTQEWTQE 79
Query: 331 VIGKEVDRYTGRKEASI-ENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQA 389
G + Y K+ + + S
Sbjct: 80 WKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNW 139
Query: 390 PSRIGGGGGKIGDLSISWEP--LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGI 447
G D+ + WE ++ + Y++ +++ N+T++ K +
Sbjct: 140 TLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKW-----KMMDPILT 194
Query: 448 AVVRIPSEFYYTEYEVKVQA 467
V + S EYEV+V++
Sbjct: 195 TSVPVYSLKVDKEYEVRVRS 214
Score = 29.0 bits (64), Expect = 3.2
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 401 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK--EYGNVGIAVVRIPSEF-- 456
S W ++F+ ++N E+ E + +Y + G S F
Sbjct: 44 ETFSCHWTD-EVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTS 102
Query: 457 YYTEYEVKVQAINDVG 472
Y +K+ +
Sbjct: 103 IAIPYCIKLTSNGGTV 118
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 49.1 bits (117), Expect = 1e-07
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 19/119 (15%)
Query: 268 STKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNV 327
S+ ++ P P + + V + + W THY +
Sbjct: 2 SSGSSG----PLPPPRALTLAAVTPRTVHLTWQ----PSAGATHYLV--------RCSPA 45
Query: 328 SEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
S +E + GR E ++ L P YE V + E + TP P
Sbjct: 46 SPKGEEEEREVQVGRPEVLLDG-LEPGRDYEVSVQSLRGPEGSEARGIRAR--TPTSGP 101
Score = 28.6 bits (64), Expect = 1.7
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
+ ++W+P +A +Y + + + E + ++ P +
Sbjct: 25 VHLTWQP------SAGATHYLVRCSPASPKG-EEEEREVQVGRPEVLLDGLEP----GRD 73
Query: 461 YEVKVQAINDVGPGPESEVVT 481
YEV VQ++ +
Sbjct: 74 YEVSVQSLRGPEGSEARGIRA 94
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 52.2 bits (124), Expect = 2e-07
Identities = 29/242 (11%), Positives = 64/242 (26%), Gaps = 18/242 (7%)
Query: 245 ITNASFADAGEYECVVKSTVGKIS----TKTTVIVEGPPGLPGGVQVVEVHKTSATIQWT 300
++ E + +++ S + P V + E + I +
Sbjct: 63 FSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHL-EAEDKAIVIHIS 121
Query: 301 DGATNGRPITHYKIIARTNWNSTWFNVSEHVIG-KEVDRYTGRKEASIENVLVPWSTYEF 359
P T ++ + S +++ +R L P +TY
Sbjct: 122 -------PGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCL 174
Query: 360 KVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPN 419
KV A + + P + + + W+
Sbjct: 175 KVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYA--NMTFQ 232
Query: 420 IYYKIFWRKKNDTEFQSETLKEYGNVGIAV---VRIPSEFYYTEYEVKVQAINDVGPGPE 476
+ + + K+N + + + V + F Y ++VQA +
Sbjct: 233 VQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFW 292
Query: 477 SE 478
SE
Sbjct: 293 SE 294
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 50.8 bits (121), Expect = 2e-07
Identities = 30/203 (14%), Positives = 59/203 (29%), Gaps = 18/203 (8%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P + V+ + + W+ G +Y + + + S + S I T
Sbjct: 10 PQQLSVLSTN-MKHLLMWSPVIAPG-ETVYYSVEYQGEYESLY--TSHIWIPSSWCSLTE 65
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 401
E + + + Y +V A S +N + + I G +
Sbjct: 66 GPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHL- 124
Query: 402 DLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 461
I E L + +WR++ E + ++ G V + + Y
Sbjct: 125 --VIELEDLG-----PQFEFLVAYWRREPGAEEHVKMVRSGGIP----VHLETMEPGAAY 173
Query: 462 EVKVQAINDV--GPGPESEVVTI 482
VK Q S+ +
Sbjct: 174 CVKAQTFVKAIGRYSAFSQTECV 196
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 47.8 bits (114), Expect = 2e-07
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P G+ +V S I W + G ++ Y++ + + E D
Sbjct: 5 PKGLAFTDVDVDSIKIAWE--SPQG-QVSRYRVTYSSPEDGIH--ELFPAPDGEEDTAE- 58
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
++ L P S Y V+A ++ +P
Sbjct: 59 -----LQG-LRPGSEYTVSVVALHDDMESQPLI 85
Score = 30.5 bits (69), Expect = 0.30
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 15/82 (18%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
+ I+WE P Y++ + D + + G A ++ P +E
Sbjct: 18 IKIAWES-P----QGQVSRYRVTYSSPEDGIHELFPAPD-GEEDTAELQGLRP----GSE 67
Query: 461 YEVKVQAINDVGPGPESEVVTI 482
Y V V A++D ES+ +
Sbjct: 68 YTVSVVALHDDM---ESQPLIG 86
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 49.4 bits (117), Expect = 2e-07
Identities = 25/138 (18%), Positives = 41/138 (29%), Gaps = 19/138 (13%)
Query: 65 QCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFVWK 124
Q L T + + L + ET GG V + C + W
Sbjct: 15 QHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDET-VVAGGTVVLKCQVKDHEDSSLQWS 73
Query: 125 KDGNIIGSGGRRKIFENG------------NLLISPVSRDDSGIYSCTATNVHGMDESKG 172
G ++ + ++ IS V+ D G Y+C+ + +K
Sbjct: 74 NPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKS 132
Query: 173 RLIVLHGPSYYEQLPPKI 190
+ VL P P I
Sbjct: 133 LVTVLGIPQ-----KPII 145
Score = 45.2 bits (106), Expect = 6e-06
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 159 CTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTH 218
+ ++ D+ K + + T+ A + L+C ++ D + W++
Sbjct: 17 MDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKC--QVKDHEDSSLQWSN 74
Query: 219 NGVRI-GNMDLNELETPNINIDGG-----LLEITNASFADAGEYECVVKSTVGKISTKTT 272
+ + L I + + I+N + AD GEY C + T+ + K+
Sbjct: 75 PAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSL 133
Query: 273 VIVEGPPGLP 282
V V G P P
Sbjct: 134 VTVLGIPQKP 143
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 48.8 bits (116), Expect = 2e-07
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 13/91 (14%)
Query: 103 EGGNVTIFCNPEAAPKPKFVW-KKDGNIIGSGGRRKI-----------FENGNLLISPVS 150
EG +T+ C W G I + ++ + V+
Sbjct: 15 EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVT 74
Query: 151 RDDSGIYSCTATNVHGMDESKGRLIVLHGPS 181
D G+Y C + + + ++IVL
Sbjct: 75 LQDEGVYKCLHYS-DSVSTKEVKVIVLATMK 104
Score = 47.3 bits (112), Expect = 8e-07
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 23/133 (17%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINI-----D 239
IT+ + L L+C + + ++ T +G I + L+ + +
Sbjct: 6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWL-TPSGFTIFLNEYPVLKNSKYQLLHHSAN 64
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQW 299
+ + N + D G Y+C+ + + + VIV
Sbjct: 65 QLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEF---------------- 107
Query: 300 TDGATNGRPITHY 312
++ RP+ H+
Sbjct: 108 CRYPSHWRPLEHH 120
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 48.3 bits (115), Expect = 3e-07
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 18/89 (20%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY----- 457
+ ++W Q Y++ +R+ + + S ++P+E
Sbjct: 32 VQVTWTVDR---QPQFIQGYRVMYRQTSGLQATSSWQNL-------DAKVPTERSAVLVN 81
Query: 458 ---YTEYEVKVQAINDVGPGPESEVVTIW 483
YE+KV+ + G +SE T+
Sbjct: 82 LKKGVTYEIKVRPYFNEFQGMDSESKTVR 110
Score = 37.2 bits (86), Expect = 0.002
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 293 TSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLV 352
T+ + WT I Y+++ R ++ + + + A + N L
Sbjct: 30 TTVQVTWTVDRQPQ-FIQGYRVMYRQ---TSGLQATSSWQNLDAKV-PTERSAVLVN-LK 83
Query: 353 PWSTYEFKVIAGNELGYGEPSSP 375
TYE KV G S
Sbjct: 84 KGVTYEIKVRPYFNEFQGMDSES 106
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 49.9 bits (119), Expect = 3e-07
Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 22/168 (13%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENG----NLLISPVSRDDSGIYS 158
V + C + F+ ++G + +G N IS +++D +G Y
Sbjct: 21 SEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79
Query: 159 CTATNVHGMDE----SKGRLIVLHGPSYYEQL--PPKITIAAHRNLQLRCSAHTEELLDV 212
C + H + S IV+ G L P T+ A N+ L CS+ +
Sbjct: 80 CYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSS---YD 136
Query: 213 AYIWTHNGVRIGNMDLNELETPNINIDGGL--LEITNASFADAGEYEC 258
Y + G + +E P G + G Y C
Sbjct: 137 MYHLSREG------EAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 47.5 bits (113), Expect = 3e-07
Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 14/103 (13%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFNVSEHVIGKE 335
G + V E+ +S + W + ++ +++ + +
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSAS---DTVSGFRVEYELSEEGDEP---QYLDLPST 57
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 378
I + L+P Y V +E G + Q
Sbjct: 58 ATSVN------IPD-LLPGRKYIVNVYQISEDGEQSLILSTSQ 93
Score = 26.7 bits (59), Expect = 5.8
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 8/79 (10%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
+SW + +++ + + + V IP +Y
Sbjct: 22 FVVSWVS-----ASDTVSGFRVEYELSEEGDEPQYL---DLPSTATSVNIPDLLPGRKYI 73
Query: 463 VKVQAINDVGPGPESEVVT 481
V V I++ G +
Sbjct: 74 VNVYQISEDGEQSLILSTS 92
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 51.5 bits (122), Expect = 3e-07
Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 25/231 (10%)
Query: 272 TVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGR------PITHYKIIARTNWNSTWF 325
T+ P P +Q+ + + W+ + + ++++ + +S W
Sbjct: 102 TLTQHVQPPEPRDLQISTD-QDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDS-WE 159
Query: 326 NVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSP----QYNT 381
+ + + L+P STY +V G PS
Sbjct: 160 DAAILLSNTSQATLGPEH-------LMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWD 212
Query: 382 PADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKE 441
P + LS SWE K+ A ++ + +F++ D +E
Sbjct: 213 SQPGDEAQPQNLECFFDGAAVLSCSWEV---RKEVASSVSFGLFYKPSPDAGSAVLLREE 269
Query: 442 YGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWHDPLVIISY 492
+ V+R +T + ++ + G V I S
Sbjct: 270 ECSP---VLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSS 317
Score = 33.8 bits (76), Expect = 0.14
Identities = 25/217 (11%), Positives = 58/217 (26%), Gaps = 36/217 (16%)
Query: 285 VQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKE 344
++ + W + + + + ++ + V R
Sbjct: 224 LECFFDGAAVLSCSWEVR-KEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLR------ 276
Query: 345 ASIENVLVPWSTYEFKVIAGNELGYG----------EPSSPSPQYNTPADKPYQAPSRIG 394
E + + + ++ + +G N P ++ G
Sbjct: 277 ---EGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDG 333
Query: 395 GGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPS 454
S+ WE + + + ++I +RK T S+T + +P+
Sbjct: 334 D------SYSLRWET-MKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAH---SMALPA 383
Query: 455 EFYYTEYEVKVQAINDVG--PGPESEVVTIWHDPLVI 489
T Y +V+ G SE W +
Sbjct: 384 LEPSTRYWARVRVRTSRTGYNGIWSE----WSEARSW 416
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 47.4 bits (113), Expect = 5e-07
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 16/109 (14%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P ++ + + + A + W P+ Y I +
Sbjct: 7 GPDGPTQLRALNLTEGFAVLHWKPPQN---PVDTYDIQVTAPGAPPL----QAETPGSAV 59
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKP 386
Y + + LV + Y V P+S + + T + P
Sbjct: 60 DYP------LHD-LVLHTNYTATVRGLRGPNLTSPASIT--FTTGLEAP 99
Score = 29.7 bits (67), Expect = 0.85
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 15/82 (18%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
+ W+P P Y I Q+ET G+ + + T
Sbjct: 24 AVLHWKP-----PQNPVDTYDIQVTAPGAPPLQAET---PGSAVDYPLHDLVLH----TN 71
Query: 461 YEVKVQAINDVGPG-PESEVVT 481
Y V+ + P S T
Sbjct: 72 YTATVRGLRGPNLTSPASITFT 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 5e-07
Identities = 76/516 (14%), Positives = 136/516 (26%), Gaps = 172/516 (33%)
Query: 16 VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPER---------------- 59
V D+ S E+ + + +L+ E
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS----KQEEMVQKFVEEVLRINYKF 93
Query: 60 --DPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP 117
P + R + + Y + R+ F K NV
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY------------NV---------S 132
Query: 118 KPKFVWK---------KDGNII--GSGGRRKIFENGNLLISPVSRD-------DSGIYSC 159
+ + K N++ G G K + V D I+
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGK-----TWVALDVCLSYKVQCKMDFKIFWL 187
Query: 160 TATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR--NLQLRCSAHTEELLDVAYIWT 217
N + + L +L Q+ P T + N++LR + EL +
Sbjct: 188 NLKNCN---SPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 218 HNGVRIGNMDLNELETPNI----NIDGGLLEIT-NASFADAGEYECVVKSTVGKISTKTT 272
+ + L ++ N+ +L T D + +T
Sbjct: 243 YENCLL---VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF----------LSAATTTHI 289
Query: 273 VIVEGPPGLPGGVQVVEVHKTSATI--QWTDG--------ATNGRPITHYKIIART--NW 320
+ L ++ ++ D P IIA + +
Sbjct: 290 SLDHHSMTL--------TPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDG 340
Query: 321 NSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 380
+TW N +HV D+ T E+S+ NVL P E++ +
Sbjct: 341 LATWDN-WKHV---NCDKLTTIIESSL-NVLEP---AEYR-----------------KM- 374
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWR--KKNDTEFQSET 438
+ LS+ P + P I + W K+D
Sbjct: 375 ------FD-------------RLSV----FP-PSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 439 LKEYGNVGIAVVRIPSEFYYTEY----EVKVQAIND 470
L +Y V + P E + E+KV+ N+
Sbjct: 411 LHKYS----LVEKQPKESTISIPSIYLELKVKLENE 442
Score = 34.1 bits (77), Expect = 0.12
Identities = 42/290 (14%), Positives = 96/290 (33%), Gaps = 81/290 (27%)
Query: 1 MDNQADLTWTCEAFGVPDV-------TYSWFRNGELLNSET------LPLEDQDRYFIQD 47
+ N + AF ++ T R ++ + + + L+ D
Sbjct: 250 LLNVQN-AKAWNAF---NLSCKILLTT----RFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 48 NVLTI--RYLN------PER----DP---AMYQCRAKNQLKT-----RYSSAQLRVLTLK 87
V ++ +YL+ P +P ++ ++ L T + +L ++
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIE 360
Query: 88 PSFKKRPLESETYAGEGGNVTIFCNPEAAPKPKFV----WKKDGNIIGSGGRRKIFENGN 143
S LE Y +++F P +A P + W I +
Sbjct: 361 SSLNV--LEPAEYRKMFDRLSVF--PPSAHIPTILLSLIWFD-----------VIKSDVM 405
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNL----Q 199
++++ + + YS K I + ++ + A HR++
Sbjct: 406 VVVNKLHK-----YSLVEKQ------PKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 200 LRCSAHTEELLDVA---YIWTHNGVRIGNMDLNELET--PNINIDGGLLE 244
+ + +++L+ Y ++H G + N++ E T + +D LE
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 49.8 bits (118), Expect = 5e-07
Identities = 26/205 (12%), Positives = 47/205 (22%), Gaps = 49/205 (23%)
Query: 103 EGGNVTIFCNPEAAPKPKFV-WKKDG-----------------------NIIGSGGRRKI 138
G +V + C P + W + G ++
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 139 FENGNLLISPVSRDDSGIYSCTA-TNVHGMDESKGRLIVLHGPSY---YEQLPPKITIAA 194
G L+++ D Y C G E+ RL V P +
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133
Query: 195 HRNLQLRCSAHTEELLDVAY-----IWTHNGVRIGN----MDLNELETPNINIDGGL--- 242
C++ W NG R+ + + + GL
Sbjct: 134 SAQEIATCNSRN------GNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSL 187
Query: 243 ---LEITNASFADAGEYECVVKSTV 264
L + + C ++
Sbjct: 188 TSTLYLRLRKDDRDASFHCAAHYSL 212
Score = 39.4 bits (91), Expect = 0.001
Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 20/144 (13%)
Query: 185 QLPPKITIAAHRNLQLRCSA-HTEELLDVAYIWTHNGVRIGNMDLNELETPNINI----- 238
+PP + + +++ L C+ T + + + T + E++ + +
Sbjct: 5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDT 64
Query: 239 ----------DGGLLEITNASFADAGEYECVVKST-VGKISTKTTVIVEGPPGLP---GG 284
G L + A D +Y CVV++ G + V P
Sbjct: 65 RGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPN 124
Query: 285 VQVVEVHKTSATIQWTDGATNGRP 308
+ V + SA T + NG P
Sbjct: 125 KGTLSVMEDSAQEIATCNSRNGNP 148
Score = 35.2 bits (80), Expect = 0.030
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 16/98 (16%)
Query: 1 MDNQADLTWTCEAF-GVPDVTYSWFRNGELLNS----------ETLPLEDQDRYFIQDNV 49
M++ A TC + G P +W+RNG+ L + + + +
Sbjct: 131 MEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTST 190
Query: 50 LTIRYLNPERDPAMYQCRAKNQL----KTRYSSAQLRV 83
L +R L + A + C A L R S +
Sbjct: 191 LYLR-LRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHL 227
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 49.4 bits (117), Expect = 6e-07
Identities = 30/223 (13%), Positives = 60/223 (26%), Gaps = 35/223 (15%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
P VQ + +QW G + Y + + W N +
Sbjct: 5 THESLKPQRVQFQSRN-FHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCW---- 59
Query: 336 VDRYTGRKEASIENV-LVPWSTYEFKVIA---GNELGYGEPSSPSPQYNTPADKPYQAPS 391
T + + Y +V A G+ + +P + T D P +
Sbjct: 60 ---GTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNIT 116
Query: 392 RIGGGGGKIGDLSISWEPLPREKQNAP----------NIYYKIFWRKKNDTEFQSETLKE 441
++ G L + + + Y++F N E + + +
Sbjct: 117 QVN------GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFII-NNSLEKEQKVYEG 169
Query: 442 YGNVGIAVVRIPSEFYYTEYEVKVQAINDV--GPGPESEVVTI 482
V I + ++ Y V + + SE +
Sbjct: 170 AHR----AVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCV 208
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 49.3 bits (117), Expect = 6e-07
Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 14/191 (7%)
Query: 293 TSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIG----KEVDRYTGRKEASIE 348
T T +W+ + ++ R + +S + + + K+ + I
Sbjct: 16 TKMTCRWSTSTIQSLAESTLQL--RYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIF 73
Query: 349 NVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI-GGGGGKIGDLSISW 407
+ S Y + + LG SP + PS + IG L ISW
Sbjct: 74 QPIFLLSGYTMWIRINHSLG--SLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISW 131
Query: 408 EPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467
E + N + ++I + E Q + + Y +V +P Y V+V+
Sbjct: 132 EKPVFPENN---LQFQIRYGLSGK-EVQWKMYEVYDAKSKSVS-LPVPDLCAVYAVQVRC 186
Query: 468 INDVGPGPESE 478
G G S
Sbjct: 187 KRLDGLGYWSN 197
Score = 30.8 bits (69), Expect = 0.81
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 13/123 (10%)
Query: 259 VVKSTVGKISTKTTVIVEG---PPGLPGGVQVVEVHKTSA-TIQWTDGATNGRPITHYKI 314
+ ++G + + T ++ P P V+ I W + ++I
Sbjct: 87 RINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENNLQ-FQI 145
Query: 315 IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
+ + + E V + + V + Y +V G G S+
Sbjct: 146 RYGLSGKEVQWKMYE-VYDAKSKSVSLP-------VPDLCAVYAVQVRCKRLDGLGYWSN 197
Query: 375 PSP 377
S
Sbjct: 198 WSN 200
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 46.7 bits (111), Expect = 7e-07
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 14/94 (14%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKI-IARTNWNSTWFNVSEHVIGKEVDRYT 340
P + V EV + S + WT A + + I + + Y
Sbjct: 5 PKNLVVSEVTEDSLRLSWT--APDA-AFDSFMIQYQESEKVGEA---INLTVPGSERSYD 58
Query: 341 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
+ L P + Y + P S
Sbjct: 59 ------LTG-LKPGTEYTVSIYGVKGGHRSNPLS 85
Score = 29.0 bits (65), Expect = 1.0
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 12/80 (15%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
L +SW +A + I +++ ++ L G+ + P TE
Sbjct: 18 LRLSWTA-----PDAAFDSFMIQYQESEKVG-EAINLTVPGSERSYDLTGLKP----GTE 67
Query: 461 YEVKVQAINDVGPGPESEVV 480
Y V + +
Sbjct: 68 YTVSIYGVKGGHRSNPLSAE 87
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 49.3 bits (117), Expect = 7e-07
Identities = 28/215 (13%), Positives = 54/215 (25%), Gaps = 18/215 (8%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKII-ARTNWNSTWFNVSEHVIGKEV 336
P + W + A+ G Y + + + +
Sbjct: 20 AARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGG 396
R+ + + E +V A + G P + +
Sbjct: 80 VRFWCSLPTA---DTSSFVPLELRVTAAS----GAPRYHRVIHINEVVLLDAPVGLVARL 132
Query: 397 GGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEF 456
+ G + + W P P E +I Y++ G + +
Sbjct: 133 ADESGHVVLRWLP-PPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRT---ECVLSNLR 188
Query: 457 YYTEYEVKVQAINDVGP--GPESEVVTIWHDPLVI 489
T Y V+A G SE W +P+ +
Sbjct: 189 GRTRYTFAVRARMAEPSFGGFWSE----WSEPVSL 219
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 46.7 bits (111), Expect = 7e-07
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P ++ EV +A + WT+ Y + T T E ++ + +
Sbjct: 11 PRDLEAKEVTPRTALLTWTEPPV---RPAGYLLSFHTPGGQTQ----EILLPGGITSHQ- 62
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
+ L P ++Y ++ A P S S
Sbjct: 63 -----LLG-LFPSTSYNARLQAMWGQSLLPPVSTS 91
Score = 27.8 bits (62), Expect = 2.6
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 458 YTEYEVKVQAINDVGPGPESEVV 480
T Y ++QA+ P
Sbjct: 69 STSYNARLQAMWGQSLLPPVSTS 91
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 48.7 bits (115), Expect = 1e-06
Identities = 28/220 (12%), Positives = 53/220 (24%), Gaps = 27/220 (12%)
Query: 275 VEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGK 334
V G P + + ++ +QWT Y + W N SE
Sbjct: 5 VSGGLPKPANITFLSIN-MKNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSEC---- 59
Query: 335 EVDRYTGRKEASI-ENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRI 393
R R + Y +V A + S ++ + P
Sbjct: 60 ---RNINRTYCDLSAETSDYEHQYYARVRAIWGTKCS-KWAESGRFYPFLETQIGPPEVA 115
Query: 394 GGGGGKIGDLSISWEPLPREKQNA---------PNIYYKIFWRKKNDTEFQSETLKEYGN 444
K + ++ + N+ Y + S+ + +
Sbjct: 116 LTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNH-- 173
Query: 445 VGIAVVRIPSEFYYTEYEVKVQAINDV--GPGPESEVVTI 482
+ + T Y V V++ SE
Sbjct: 174 ----TLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCA 209
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 46.3 bits (110), Expect = 1e-06
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 9/80 (11%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYE 462
L ++W N+ Y++ +++ Q + P T Y
Sbjct: 26 LELTWAGSRPRNPG-GNLSYELHVLNQDEEWHQMVLEPRVLLTKLQ----P----DTTYI 76
Query: 463 VKVQAINDVGPGPESEVVTI 482
V+V+ + +GPGP S
Sbjct: 77 VRVRTLTPLGPGPFSPDHEF 96
Score = 41.7 bits (98), Expect = 4e-05
Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 20/119 (16%)
Query: 275 VEGPPGLPG-GVQVVEVHKTSATIQWTDGATNGR-PITHYKIIARTNWNSTWFNVSEHVI 332
G L G +++V+ + W Y++
Sbjct: 5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQ------------- 51
Query: 333 GKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPS 391
+E + + L P +TY +V LG G P SP ++ T P PS
Sbjct: 52 DEEWHQMVLEPRVLLTK-LQPDTTYIVRVRTLTPLGPG-PFSPDHEFRT---SPPSGPS 105
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 46.1 bits (109), Expect = 2e-06
Identities = 27/119 (22%), Positives = 38/119 (31%), Gaps = 19/119 (15%)
Query: 277 GPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEV 336
G +P ++VV TS I W + G +Y+I ++ V E + V
Sbjct: 2 GVSDVPRDLEVVAATPTSLLISWD--SGRG-SYQYYRITYGETGGNSP--VQEFTVPGPV 56
Query: 337 DRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ-------YNTPADKPYQ 388
T I L P Y V A + + Y T DKP Q
Sbjct: 57 HTAT------ISG-LKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQ 108
Score = 29.5 bits (66), Expect = 0.82
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 403 LSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYYTE 460
L ISW+ YY+I + + E G V A + P +
Sbjct: 20 LLISWDS-----GRGSYQYYRITYGETGGNSPVQE-FTVPGPVHTATISGLKP----GVD 69
Query: 461 YEVKVQAINDVGPGPESEVVTIWHDPLVI 489
Y + V A+ D P + T P+ I
Sbjct: 70 YTITVYAVTDHKPHADGP-HTYHESPISI 97
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 47.3 bits (112), Expect = 3e-06
Identities = 26/203 (12%), Positives = 57/203 (28%), Gaps = 41/203 (20%)
Query: 101 AGEGGNVTIFC----NPEAAPKPKFVWKKDGNII---GSG---------GRRKIFENGN- 143
T+ C + E + + W+K+ ++ SG R N
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 144 -LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHR---NLQ 199
++I + D G Y C + L + + P I+ +
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 200 LRCSAH------TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT---NASF 250
+ CS W NG + T + + + L ++ + +
Sbjct: 126 IICSTSGGFPEPH-------LSWLENGEEL----NAINTTVSQDPETELYAVSSKLDFNM 174
Query: 251 ADAGEYECVVKSTVGKISTKTTV 273
+ C++K +++
Sbjct: 175 TTNHSFMCLIKYGHLRVNQTFNW 197
Score = 36.5 bits (84), Expect = 0.009
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 23/105 (21%)
Query: 243 LEITNASFADAGEYECVVKSTVGKIS-----TKTTVIVEGPPGLPGGVQVVEVHKTS--- 294
+ I +D G YECVV + T+ V+ P + E+ ++
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTP-SISDFEIPTSNIRR 125
Query: 295 -----------ATIQWTDGATNGRPITHYKIIARTNWNSTWFNVS 328
+ W + NG + + + + VS
Sbjct: 126 IICSTSGGFPEPHLSWLE---NGEELNAINTTVSQDPETELYAVS 167
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 48.2 bits (113), Expect = 3e-06
Identities = 44/305 (14%), Positives = 79/305 (25%), Gaps = 51/305 (16%)
Query: 197 NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEY 256
+ L C E+ WT + + + G L I F DAG+Y
Sbjct: 23 MVVLTCDTPEED----GITWTLDQ------------SSEVLGSGKTLTIQVKEFGDAGQY 66
Query: 257 ECVVKSTV-------------GKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGA 303
C V G ST + P + + T W
Sbjct: 67 TCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTT- 125
Query: 304 TNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP-------WST 356
+ K ++ + + + V E S+E
Sbjct: 126 ISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLP 185
Query: 357 YEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQN 416
E V A ++L Y S + KP + + +SWE P
Sbjct: 186 IEVMVDAVHKLKY--EQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEY-PDTWST 242
Query: 417 APNIY---YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGP 473
+ + + + + K+ E + + + + + V+A +
Sbjct: 243 PHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVIC--------RKNASISVRAQDRYYS 294
Query: 474 GPESE 478
SE
Sbjct: 295 SSWSE 299
Score = 47.4 bits (111), Expect = 5e-06
Identities = 33/301 (10%), Positives = 72/301 (23%), Gaps = 52/301 (17%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN-LLISPVSRDDSGIYSCTA 161
G V + C + + W D ++ +G L I D+G Y+C
Sbjct: 20 PGEMVVLTC--DTPEEDGITWTLDQ-------SSEVLGSGKTLTIQVKEFGDAGQYTCHK 70
Query: 162 TN-----VHGMDESKGRLIVLHGPSYYEQLPPKIT----IAAHRNLQLRCSAHTEELLDV 212
+ K I ++ P T A + + + C T D+
Sbjct: 71 GGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDL 130
Query: 213 AYIWT----HNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE----------YEC 258
+ + + L + D E + D+
Sbjct: 131 TFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMV 190
Query: 259 VVKSTVGKISTKTTVIVE--GPPGLPGGVQVVEVHKTSA-TIQWTDGATNGRPITHYKI- 314
+ ++ + P P +Q+ + + + W T P +++ +
Sbjct: 191 DAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLT 250
Query: 315 --IARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEP 372
+ + ++ V A +
Sbjct: 251 FCVQVQGKSKREKKDRVFTDKTSAT-------------VICRKNASISVRAQDRYYSSSW 297
Query: 373 S 373
S
Sbjct: 298 S 298
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 45.3 bits (107), Expect = 3e-06
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 24/111 (21%)
Query: 100 YAGEGGNVTIFCN-PEAAPKPKFVWKKDGN---IIGSGGRRKIFE------------NGN 143
G NVT+ + + W + + + K FE +G
Sbjct: 15 TVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGA 74
Query: 144 LLISPVSRDDSGIYSCTATNVHG-MDESKGRLIVLHGPSYYEQLP-PKITI 192
L IS V ++D+ Y G E K +L V + +P P I I
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV------LDPVPKPVIKI 119
Score = 36.8 bits (85), Expect = 0.003
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 12/115 (10%)
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG-VRIGNMDLNELETPN- 235
G S L +T+ + N+ L S E W + +I D + +
Sbjct: 3 SGSSGQGHLVH-MTVVSGSNVTLNISESLPENYK-QLTWFYTFDQKIVEWDSRKSKYFES 60
Query: 236 -------INIDGGLLEITNASFADAGEYECVVKSTVGKISTKT-TVIVEGPPGLP 282
++ G L I+ D Y V G + V P P
Sbjct: 61 KFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 48.9 bits (115), Expect = 3e-06
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 105 GNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
+ C E+ + W+ N+ S N L I ++ G Y C A
Sbjct: 516 SRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQ 572
Score = 35.0 bits (79), Expect = 0.068
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 178 HGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNIN 237
P + K+++A + L C + Y W H + + P
Sbjct: 498 PNPKPDKAPLQKVSLAPNSRYYLSCPMES---RHATYSWRHKENVEQSCE------PGHQ 548
Query: 238 IDGGLLEITNASFADAGEYECV-VKSTVGKISTKTTVIVEG 277
+L I N + G Y C + + + + ++ E
Sbjct: 549 SPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHWQLLPED 589
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 45.2 bits (106), Expect = 4e-06
Identities = 23/115 (20%), Positives = 29/115 (25%), Gaps = 17/115 (14%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCNPEAAP---KPKFVWKKDGNI---I 130
SS F K+P G + + KP W K +
Sbjct: 2 SSGSSGAEEPTGVFLKKP--DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGS 59
Query: 131 GSGGRRKIFENGN---------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
SG R E+ N L I V D G Y D + V
Sbjct: 60 KSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 42.1 bits (98), Expect = 4e-05
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYI------WTHNGVRIG-NMDLNELETPNINID 239
P +++ ++ + + +EL D I W G + G E N+
Sbjct: 19 PDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVY 78
Query: 240 GGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
L I D G Y VK+ S + VE P
Sbjct: 79 TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 44.9 bits (106), Expect = 4e-06
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 16/102 (15%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFV--WKKDGNIIGS-------------GGRRKIFE 140
A +GG++ + C+ + W++ ++ R
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69
Query: 141 NGNLLISPVSRDDSGIYSCT-ATNVHGMDESKGRLIVLHGPS 181
L + ++ +D+G Y C T G + L VL
Sbjct: 70 GLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSV 111
Score = 37.2 bits (86), Expect = 0.002
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 8/103 (7%)
Query: 185 QLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIG------NMDLNELETPNINI 238
+ I+ ++ L+C + W + ++ +
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67
Query: 239 DGGL-LEITNASFADAGEYECVVKS-TVGKISTKTTVIVEGPP 279
GL L + + + D GEY C+ + G + + + V
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 46.2 bits (109), Expect = 8e-06
Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 50/233 (21%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC--NPEAAPKPKFV-WKKDGN----- 128
+ Q VL A G + + C P + + + W
Sbjct: 1 ADLQFSVLGPSGPIL---------AMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVN 51
Query: 129 ------------IIGSGGRRKIFENG------NLLISPVSRDDSGIYSCTATNVHGMDES 170
GR I +G L I V+ DSG Y C + +++
Sbjct: 52 VYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKA 111
Query: 171 KGRLIVLHGPSYYEQLPPKITIAAHR--NLQLRCSAHTEELLDVAYIWTHNGVRIGNMDL 228
L V S + + ++ + L C + W++N +
Sbjct: 112 LVELKVAALGS-----DLHVDVKGYKDGGIHLECRST-GWYPQPQIQWSNNKGEN----I 161
Query: 229 NELETPNINIDGGLLEIT---NASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
+E P + GL + + C ++S++ + ++ + P
Sbjct: 162 PTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214
Score = 35.8 bits (82), Expect = 0.018
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 15/102 (14%)
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKT--------- 293
L I N + +D+G+Y C + + V
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTG 144
Query: 294 ---SATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVI 332
IQW++ G I + + + V+ VI
Sbjct: 145 WYPQPQIQWSNN--KGENIPTVEAPVVADGVGL-YAVAASVI 183
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 43.8 bits (103), Expect = 9e-06
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Query: 276 EGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKE 335
G + V +V +S + W + + ST ++ +E
Sbjct: 6 SGSRPRLSQLSVTDVTTSSLRLNWEAPPG---AFDSFLLRFGVPSPSTLEPHPRPLLQRE 62
Query: 336 VDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS 374
+ R A + + L + Y + +
Sbjct: 63 LMVPGTRHSAVLRD-LRSGTLYSLTLYGLRGPHKADSIQ 100
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 47.1 bits (110), Expect = 1e-05
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 117 PKPKFVWKKDGN-IIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLI 175
+ WK + + + NLLI +S DSG+Y C + +++ +++
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE-RVKNKTVFQVV 618
Query: 176 VLHGPSYYEQLPPKITIA 193
H ++ PK +A
Sbjct: 619 AKHVLE--VKVVPKPVVA 634
Score = 38.2 bits (87), Expect = 0.007
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 13/108 (12%)
Query: 195 HRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAG 254
+L+CS + W + LL I N S D+G
Sbjct: 548 GGTAELKCSQKSNL---ARVFWKFQNGVLKAESPKYGLMG----RKNLL-IFNLSEGDSG 599
Query: 255 EYECV-----VKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATI 297
Y+C+ TV ++ K + V+ P + V + I
Sbjct: 600 VYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRI 647
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 42.5 bits (99), Expect = 2e-05
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 104 GGNVTIFCNPEAAPKPKFVWKKDGNIIGS--GGRRKIFENGNLLISPVSR-DDSGIYSCT 160
G V + C P + +W+ + IG + + +L + S + SG Y C
Sbjct: 21 GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78
Query: 161 ATNVHGMDES 170
D +
Sbjct: 79 PRGSKPEDAN 88
Score = 35.9 bits (82), Expect = 0.005
Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQ 65
+ TC + ++ W N + + + D ++ L+++ + Y
Sbjct: 23 TVILTCPQYPGSEIL--WQHNDKNIGGDE----DDKNIGSDEDHLSLKEFSELEQSGYYV 76
Query: 66 CRAKNQLK 73
C +
Sbjct: 77 CYPRGSKP 84
Score = 29.4 bits (65), Expect = 1.0
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 184 EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLL 243
Q P K++I+ + L C + + +W HN IG + + NI D L
Sbjct: 11 TQTPYKVSISG-TTVILTCPQYPGSEI----LWQHNDKNIGGDE----DDKNIGSDEDHL 61
Query: 244 EITNAS-FADAGEYECVVKSTVGKIST 269
+ S +G Y C + + + +
Sbjct: 62 SLKEFSELEQSGYYVCYPRGSKPEDAN 88
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 44.9 bits (106), Expect = 3e-05
Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 29/177 (16%)
Query: 8 TWTCEAFGV--PDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
++TCE+ G D+T WF+NG L+ + + + + + L E +
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVV-LTREDVHSQ 194
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAG----EGGNVTIFC-----NPE 114
C + T S R + V + C P+
Sbjct: 195 VICEVAHV----TLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQ 250
Query: 115 AAPKPKFVWKKDGNIIGSGGRRKIFENGN--------LLISPVSRDDSGIYSCTATN 163
+ W ++GN+ + + EN + LL++ + D +C +
Sbjct: 251 RL---QLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEH 304
Score = 32.6 bits (74), Expect = 0.27
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 7 LTWTCEAFGV--PDVTYSWFRNGELLNSETL--PLEDQDRYFIQDNVLTIRYLNPERDPA 62
+ TC+ + +W NG + +ET E++D + + L + ++ RD
Sbjct: 238 VNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVN-VSAHRDDV 296
Query: 63 MYQCRAKNQ-LKTRYSSAQLRVLTLKP 88
C+ ++ S L+V T
Sbjct: 297 KLTCQVEHDGQPAVSKSHDLKVSTRHH 323
Score = 31.4 bits (71), Expect = 0.66
Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 15/151 (9%)
Query: 144 LLISPVSRDDSGIYSCTA-----TNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNL 198
+ IS ++ D+G Y C + + L V PS P +
Sbjct: 76 ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 135
Query: 199 QLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG-----LLEITNASFADA 253
C +H D+ W NG + + + + ++
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSD---FQTNVDPVGESVSYSIHSTAKVVLTREDVH 192
Query: 254 GEYECVV--KSTVGKISTKTTVIVEGPPGLP 282
+ C V + G T + E P
Sbjct: 193 SQVICEVAHVTLQGDPLRGTANLSETIRVPP 223
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 42.4 bits (99), Expect = 1e-04
Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 38/213 (17%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTG 341
P V++ V+ +QW A +T + + ++ T
Sbjct: 5 PENVRMNSVN-FKNILQWESPAFAKGQLT-FTAQYLSYRI-----------FQDKCMQTT 51
Query: 342 RKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIG 401
E + L + + +V A E S +P D P +
Sbjct: 52 LTECDFSS-LSKYGDHTLRVRAEFA---DEHSDWVQITFSPVDDTIIGPPGMQVEVLA-D 106
Query: 402 DLSISWEPLPREKQNAPNI----------YYKIFWRKKNDTEFQSETLKEYGNVGIAVVR 451
L + + P+ + Y +W++ D +FQ ++
Sbjct: 107 CLHMRFLA-PKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDF-------EV 158
Query: 452 IPSEFYYTEYEVKVQAINDV--GPGPESEVVTI 482
+ + +T Y V+V+ G SE V
Sbjct: 159 LRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCE 191
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 42.3 bits (99), Expect = 1e-04
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 10/130 (7%)
Query: 351 LVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWE-P 409
+V Y + AG +L + PS KP +AP + L ++W P
Sbjct: 68 VVSADNYTLDLWAGQQLLWKGSFKPSEHV-----KP-RAPGNLTVHTNVSDTLLLTWSNP 121
Query: 410 LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY-YTEYEVKVQAI 468
P + ++ Y + +ND + + ++ S Y +V+A
Sbjct: 122 YPPDNYLYNHLTYAVNIWSENDPA--DFRIYNVTYLEPSLRIAASTLKSGISYRARVRAW 179
Query: 469 NDVGPGPESE 478
SE
Sbjct: 180 AQAYNTTWSE 189
Score = 33.9 bits (77), Expect = 0.070
Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITH---YKIIARTNWNSTWFNVSEHVIGKEVDR 338
PG + V + + W++ + + Y + + + F + + R
Sbjct: 101 PGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLR 160
Query: 339 YTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPS--SPSPQYNTPADKPYQ 388
L +Y +V A + S SPS +++ +P++
Sbjct: 161 IAAST-------LKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREPFE 205
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 42.0 bits (98), Expect = 1e-04
Identities = 14/108 (12%), Positives = 24/108 (22%), Gaps = 10/108 (9%)
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPK 120
C + +T + +R + PL GE N T+ C
Sbjct: 66 PVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGE--NFTLSCRVPGAGPRASLT 123
Query: 121 FVWKKDGNIIGSGGRRKIFENGN-----LLISPVSRDDSGIYSCTATN 163
+ + + D +SC A
Sbjct: 124 LTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAEL 171
Score = 38.9 bits (90), Expect = 0.002
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 6 DLTWTCEAFGV---PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYL-NPERDP 61
+ T +C G +T + R + L + E + VLT L E
Sbjct: 106 NFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRA---RGAVLTATVLARREDHG 162
Query: 62 AMYQCRAKNQLKT------RYSSA--QLRVLTL 86
A + CRA+ L+ SSA +LR +L
Sbjct: 163 ANFSCRAELDLRPHGLGLFENSSAPRELRTFSL 195
Score = 33.9 bits (77), Expect = 0.075
Identities = 7/96 (7%), Positives = 20/96 (20%), Gaps = 12/96 (12%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
P + +L L CS + + + ++
Sbjct: 9 PRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQR-----------GLRWLARQLV 57
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
+ + C + + + + P
Sbjct: 58 DIR-EPETQPVCFFRCARRTLQARGLIRTFQRPDRV 92
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 43.0 bits (100), Expect = 1e-04
Identities = 30/213 (14%), Positives = 59/213 (27%), Gaps = 19/213 (8%)
Query: 265 GKISTKTTVIVEG-PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNST 323
+ K EG P +Q + + + W G N P T+Y +
Sbjct: 83 SILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPG-RNTSPDTNYTLYYWHRSLEK 141
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQYNTPA 383
+Y G + + + +++ + G S + T
Sbjct: 142 IHQCENIF---REGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKI-KPSFNIVPLTSR 197
Query: 384 DKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYG 443
KP P I DL + WE + + ++Y++ ++E
Sbjct: 198 VKP--DPPHIKNLSFHNDDLYVQWEN--PQNFISRCLFYEVEVNNSQTETHNVFYVQEAK 253
Query: 444 NVGIAVVR---------IPSEFYYTEYEVKVQA 467
R +P T V+++
Sbjct: 254 CENPEFERNVENTSCFMVPGVLPDTLNTVRIRV 286
Score = 30.3 bits (67), Expect = 1.6
Identities = 9/106 (8%), Positives = 29/106 (27%), Gaps = 10/106 (9%)
Query: 260 VKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTD-GATNGRPITH---YKII 315
+K + + + V + P + H +QW + R + +
Sbjct: 185 IKPSFNIVPLTSRVKPDPPHIK-----NLSFHNDDLYVQWENPQNFISRCLFYEVEVNNS 239
Query: 316 ARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKV 361
N + ++ + + ++P + ++
Sbjct: 240 QTETHNVFYVQEAKCENPEFERNVENTSCFMVPG-VLPDTLNTVRI 284
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 39.3 bits (92), Expect = 3e-04
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 103 EGGNVTIFCNPEAAPKP--KFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159
G VT+ C+ P+ +G + + K + + + +D+G Y C
Sbjct: 18 LGDTVTLRCH---LPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQC 73
Score = 28.1 bits (63), Expect = 2.7
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 16/82 (19%)
Query: 184 EQLP-------PKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNI 236
+QLP P ++ + LRC NG L + +
Sbjct: 1 QQLPQPSLSLHPSQGVSLGDTVTLRCHLPRM---AAWVQLWLNG------TLRFDKEKDK 51
Query: 237 NIDGGLLEITNASFADAGEYEC 258
D + DAG Y+C
Sbjct: 52 EQDAAEFSFAVTNLEDAGTYQC 73
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 38.9 bits (91), Expect = 4e-04
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 104 GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159
G VT+ C + + +KDG+ I PV+ +G YSC
Sbjct: 23 GTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSC 80
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 39.4 bits (91), Expect = 5e-04
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 11/124 (8%)
Query: 370 GEPSSPSPQYNTPADKPYQAPSRIG-GGGGKIGDLSISWEPLPREKQNAPN----IYYKI 424
G S +++T P P + G + +SW P N Y +
Sbjct: 1 GSSGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV 60
Query: 425 FWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTIWH 484
+ + + E T V + V V+ ++ G +S V +
Sbjct: 61 YAKGQRVAEVIFPTA------DSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPP 114
Query: 485 DPLV 488
+ LV
Sbjct: 115 ELLV 118
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 38.9 bits (91), Expect = 6e-04
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 104 GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
G VT+ C + + +KDG+ I PV+ +G YSC
Sbjct: 23 GTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIY 82
Query: 162 TNVHGMDESKGRL-IVLHGPSYYEQLPPKIT 191
+ E L + + + + P T
Sbjct: 83 SKGITWSERSKTLELKVIKENVIQTPAPGPT 113
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 38.0 bits (88), Expect = 8e-04
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 10/76 (13%)
Query: 216 WTHNGVRIGNMDLNELETPN-----INIDGGL--LEITNASFADAGEYECVVKSTVGKIS 268
W NG + + + P I G L + D+G +
Sbjct: 40 WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFS---CPGVQ 96
Query: 269 TKTTVIVEGPPGLPGG 284
+ ++ G G
Sbjct: 97 DSAALTIQESSGPSSG 112
Score = 31.9 bits (72), Expect = 0.13
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 13/85 (15%)
Query: 6 DLTWTCEAFGVPDVTYSWFRNGELLNSE---TLPLEDQDRYFIQDN----VLTIRYLNPE 58
D ++ + + T WF NGE L S RY I+ L + + +
Sbjct: 25 DAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ 82
Query: 59 RDPAMYQCRAKNQLKTRYSSAQLRV 83
A+ SA L +
Sbjct: 83 DSGALVGFSCPGV----QDSAALTI 103
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 40.4 bits (94), Expect = 0.001
Identities = 42/285 (14%), Positives = 80/285 (28%), Gaps = 29/285 (10%)
Query: 2 DNQADLTWTCEAFGV--PDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTIRYLNP 57
+ C G + +W +G++++ T + + LT+ +
Sbjct: 22 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHW 81
Query: 58 ERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPS---FKKRPLESETYAGEGGNVTIFCN-- 112
D Y C+ Q T S + + + RP + + + +T
Sbjct: 82 LSD-RTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDL 140
Query: 113 PEAAPKPKFVWKKDGNIIGSG--GRRKIFENG------NLLISPVSRDDSGIYSCTATNV 164
+ + W + + + + NG L + + Y C T+
Sbjct: 141 APSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHP 200
Query: 165 HGMDESKGRLIVLHGPSYYEQ---LPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGV 221
H GP + + L C D++ W HN V
Sbjct: 201 HLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEV 260
Query: 222 RIGNMDLNELETPNINIDGG------LLEITNASFADAGEYECVV 260
++ D T G LE+T A + E+ C
Sbjct: 261 QLP--DARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRA 303
Score = 32.3 bits (73), Expect = 0.32
Identities = 26/209 (12%), Positives = 49/209 (23%), Gaps = 29/209 (13%)
Query: 97 SETYAGEGGNVTIFC-----NPEAAPKPKFVWKKDGNIIGSGGR--RKIFENGN------ 143
+ + + C P + W +DG ++ E
Sbjct: 17 CDGGGHFPPTIQLLCLVSGYTPGTI---QITWLEDGQVMDVDLSTASTTQEGELASTQSE 73
Query: 144 LLISPVSRDDSGIYSCTAT---NVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 200
L +S Y+C T + K G S Y P + ++ +
Sbjct: 74 LTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTI 133
Query: 201 RCSAH--TEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGG-----LLEITNASFADA 253
C V W+ G + +G L + + +
Sbjct: 134 TCLVVDLAPSKGTVQLTWSRAS---GKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEG 190
Query: 254 GEYECVVKSTVGKISTKTTVIVEGPPGLP 282
Y+C V + + P
Sbjct: 191 ETYQCRVTHPHLPRALMRSTTKTSGPRAA 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.002
Identities = 49/341 (14%), Positives = 94/341 (27%), Gaps = 122/341 (35%)
Query: 28 ELLNSETLPLEDQD---RYFIQDNVLTIRYLNPERDPAMYQ-CRAKN---------Q--- 71
+LL L + +I ++ R + + + A+++ N Q
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 72 ------LKTRYSSAQLRV--------LTLKPSFKKRPLESETYAGEGGNVTIFC-NPEAA 116
L+ Y + + V TL + L++E +G N+ + NP
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSE-LIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYS----CTATNVHGM----- 167
P + LL P+S G+ + G
Sbjct: 226 PDKDY----------------------LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 168 -DESKGRLIVLHG-------------PSYYEQLPPKITIAAHRNLQLRC----SAHTEEL 209
KG G S++ + IT+ + +RC +
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF--IGVRCYEAYPNTSLPP 321
Query: 210 LDVAYIWTHN--------GVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVK 261
+ +N + N+ +++ + TN+ + E
Sbjct: 322 SILEDSLENNEGVPSPMLSIS--NLTQEQVQD--------YVNKTNSHLPAGKQVE---- 367
Query: 262 STVGKIS---TKTTVIVEGPP----GLPGGVQVVEVHKTSA 295
IS ++V GPP GL + + K A
Sbjct: 368 -----ISLVNGAKNLVVSGPPQSLYGL-----NLTLRKAKA 398
Score = 33.1 bits (75), Expect = 0.30
Identities = 50/248 (20%), Positives = 79/248 (31%), Gaps = 67/248 (27%)
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETY-AGEGGNVTIFCNPEAAPKPKFVWKK 125
RA N K Y + L ++ P+ + GE G I N A F
Sbjct: 1648 RADNHFKDTYGFSILDIV------INNPVNLTIHFGGEKGK-RIRENYSAM---IFETIV 1697
Query: 126 DGNIIGSGGRRKIFENGNLLISPVS-RDDSGIYSCT-----ATNVHGMDESKGRLIVLHG 179
DG + KIF+ N + + R + G+ S T A + L
Sbjct: 1698 DGKLK----TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA-------------LTLME 1740
Query: 180 PSYYEQL------PPKITIAAHRNL----QLRCSA---HTEELLDVAYIWTHNGVRIGNM 226
+ +E L P T A H +L L A E L++V + R G
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGH-SLGEYAALASLADVMSIESLVEVVFY------R-GMT 1792
Query: 227 DLNELE-TPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVE-----GPPG 280
+ + G++ I A + E ++ V ++ +T +VE
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQE-ALQYVVERVGKRTGWLVEIVNYNVE-- 1849
Query: 281 LPGGVQVV 288
Q V
Sbjct: 1850 ---NQQYV 1854
Score = 29.6 bits (66), Expect = 2.8
Identities = 40/243 (16%), Positives = 61/243 (25%), Gaps = 81/243 (33%)
Query: 315 IARTNWNSTWFNVSEHVIGKEVDRYTGRKEA-SIENVLV--PWS-TYEFKVIAGNEL--G 368
A+ WN D + SI ++++ P + T F G +
Sbjct: 1641 AAQDVWN-------------RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 369 YGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREK----QNA-PNIY-- 421
Y + + T D + S ++ + Q P +
Sbjct: 1688 Y-----SAMIFETIVDGKLKTEKIFKEINEHS--TSYTFRS-EKGLLSATQFTQPALTLM 1739
Query: 422 -YKIF--WRKK----NDTEF--QSETLKEY------GNV-----GIAVVRIPSEFYYTEY 461
F + K D F S L EY +V + VV
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHS--LGEYAALASLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 462 E--------VKVQAIND--VGPGPESEVVTIW-------HDPLVIIS--------YVCQG 496
+ AIN V E + LV I YV G
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 497 DLK 499
DL+
Sbjct: 1858 DLR 1860
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 36.9 bits (86), Expect = 0.002
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 32/107 (29%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKI------IARTNWNSTWFNVSEHV 331
P P + +S T+ WT +T+ +T Y + T +
Sbjct: 3 APTAPTNLASTAQTTSSITLSWT-ASTDNVGVTGYDVYNGTALATTV--TGTTATI---- 55
Query: 332 IGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQ 378
+G L ++Y F V A + G S+ S
Sbjct: 56 --------SG---------LAADTSYTFTVKAKD--AAGNVSAASNA 83
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 37.1 bits (86), Expect = 0.002
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 27/109 (24%)
Query: 96 ESETYAGEGGNVTIFC-----NPEAAPKPKFVWKKD-------------GNIIGSGGRRK 137
++ G +VT+ C N E + W + G R +
Sbjct: 7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 66
Query: 138 I--------FENGNLLISPVSRDDSGIYSC-TATNVHGMDESKGRLIVL 177
N +L + + +D G Y+C T G L VL
Sbjct: 67 FVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
Score = 37.1 bits (86), Expect = 0.002
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 243 LEITNASFADAGEYEC-VVKSTVGKISTKTTVIVEGPP 279
L + D G Y C V G S + V P
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 37.8 bits (87), Expect = 0.003
Identities = 24/162 (14%), Positives = 39/162 (24%), Gaps = 22/162 (13%)
Query: 10 TCEAFGVPDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAK 69
C LN L + Q ++++ N+ + QC
Sbjct: 23 NCST-TCNQPEVGGLET--SLNKILLDEQAQWKHYLVSNI---------SHDTVLQCHFT 70
Query: 70 NQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAAPKPK--FVWKKD 126
K ++ + V T G + TI C P P +
Sbjct: 71 CSGKQESMNSNVSVYQPPRQVILTL--QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRG 128
Query: 127 GNIIGS----GGRRKIFENGNLLISPVSRDDSG-IYSCTATN 163
+ E S R+D +SC A
Sbjct: 129 NETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVL 170
Score = 32.8 bits (74), Expect = 0.16
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 7/74 (9%)
Query: 6 DLTWTCEAFGV---PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYL-NPERDP 61
T C V +T FR E L+ ET Q+ T + E
Sbjct: 105 SFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAP---QEATATFNSTADREDGH 161
Query: 62 AMYQCRAKNQLKTR 75
+ C A L +R
Sbjct: 162 RNFSCLAVLDLMSR 175
Score = 29.7 bits (66), Expect = 1.6
Identities = 15/167 (8%), Positives = 41/167 (24%), Gaps = 21/167 (12%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEIT 246
P K+ + +L++ CS + + N + +
Sbjct: 9 PKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDE-------------QAQWKHYL 55
Query: 247 NASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNG 306
++ + +C + + S + V V PP + +
Sbjct: 56 VSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTV 115
Query: 307 RPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVP 353
P+ + F +E + + + + +
Sbjct: 116 EPLDSLTL--------FLFRGNETLHYETFGKAAPAPQEATATFNST 154
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 35.8 bits (83), Expect = 0.005
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 10/63 (15%)
Query: 104 GGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENG-----NLLISPVSRDDSGI 156
G +VT C F +++ + + I VS ++G
Sbjct: 23 GSHVTFVCRGPVGVQ---TFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGP 79
Query: 157 YSC 159
Y C
Sbjct: 80 YRC 82
Score = 28.1 bits (63), Expect = 2.2
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 184 EQLPPKITIAAH--------RNLQLRCSAHTEELLDVAYIWTHNGVRIGNMDLNELETPN 235
E+ P+ +I+A ++ C + R D ++ +
Sbjct: 4 EEDLPRPSISAEPGTVIPLGSHVTFVCRGPVG---VQTFRLERES-RSTYNDTEDVSQAS 59
Query: 236 INIDGGLLEITNASFADAGEYEC 258
+ I + S +AG Y C
Sbjct: 60 PSESEARFRIDSVSEGNAGPYRC 82
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 36.1 bits (83), Expect = 0.006
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L I N F+D G Y C + + + VE P
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF 123
Score = 27.6 bits (61), Expect = 5.2
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETY 100
L I+ + D Y C ++ ++ +L+V P + P S ++
Sbjct: 87 LRIQNVRFS-DEGGYTCFFRDHSYQEEAAVELKVED--PFYWINPGRSRSH 134
Score = 27.2 bits (60), Expect = 6.5
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L I V D G Y+C + +E+ L V
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.009
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 15/33 (45%)
Query: 87 KPSFKKRPLES--ETYAGEGGNVTIFCNPEAAP 117
K + KK L++ + YA ++AP
Sbjct: 19 KQALKK--LQASLKLYA-----------DDSAP 38
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 35.6 bits (82), Expect = 0.010
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
+ ++ ++ + D G Y C G+ K L+VL
Sbjct: 88 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124
Score = 34.5 bits (79), Expect = 0.019
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIV 275
+ +TN +D G Y+C VK G + K ++V
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 26.8 bits (59), Expect = 8.7
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVL 84
+ + L D YQC+ K L VL
Sbjct: 91 INVTNLQLS-DIGTYQCKVKKAPGVANKKIHLVVL 124
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 37.1 bits (86), Expect = 0.013
Identities = 51/296 (17%), Positives = 101/296 (34%), Gaps = 45/296 (15%)
Query: 18 DVTYSWFRNGELLNS---ETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKT 74
VT +W +G + + T P + + + + L++ + Y C+ ++
Sbjct: 145 AVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWK-SHRSYSCQVTHE--- 200
Query: 75 RYSSAQLRVLTLKPSFKKR-----PLESETYAGEGGNVTIFC-----NPEAAPKPKFVWK 124
S+ + V + S + PL + + GG + C P+ W
Sbjct: 201 -GSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPV---TVSW- 255
Query: 125 KDGNIIGSGGR--RKIFENGNL------LISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
+ + SG + ++ L + P S + Y C + + R+
Sbjct: 256 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP 314
Query: 177 LHGPSYYEQLPPKI-TIAAHRNLQLRCSAH--TEELLDVAYIWTHNGVRIGNMDLNELET 233
L PS + P T+ R ++ C + E V + W +GV++ N
Sbjct: 315 LSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQV----HNAKTK 370
Query: 234 PNINIDGGL------LEITNASFADAGEYECVVKSTVGKISTKTTV-IVEGPPGLP 282
P L + + ++ D EY+C V + + T+ +G P P
Sbjct: 371 PREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREP 426
Score = 35.2 bits (81), Expect = 0.055
Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 33/186 (17%)
Query: 7 LTWTCEAFGVPDVTYSWFR--NGELL-----NSETLPLEDQDRYFI----QDNVLTIRYL 55
+T +C +T +W++ G P R+ L I L
Sbjct: 18 VTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGL 77
Query: 56 NPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP----LESETYAGEGGNVTIFC 111
E D + Y C + N Y +T+ K P + + T+ C
Sbjct: 78 EAE-DESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVC 136
Query: 112 -----NPEAAPKPKFVWKKDGNIIGSGGRRK--IFENGN-------LLISPVSRDDSGIY 157
P A WK DG+ + +G ++ N L ++P Y
Sbjct: 137 LISDFYPGAV---TVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSY 193
Query: 158 SCTATN 163
SC T+
Sbjct: 194 SCQVTH 199
Score = 33.7 bits (77), Expect = 0.16
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 24/141 (17%)
Query: 3 NQADLTWTCEAFGV----PDVTYSWFRNG-ELLNSETLPLEDQDRY-FIQDNVLTIRYLN 56
TC V P V ++W+ +G ++ N++T P E Q + +VLT+ + N
Sbjct: 333 ISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQN 392
Query: 57 PERDPAMYQCRAKNQ-----LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC 111
D Y+C+ N+ ++ S A + +P P E V++ C
Sbjct: 393 WL-DGKEYKCKVSNKALPAPIEKTISKA--KGQPREPQVYTLPPSRE--EMTKNQVSLTC 447
Query: 112 -----NPEAAPKPKFVWKKDG 127
P W+ +G
Sbjct: 448 LVKGFYPSDI---AVEWESNG 465
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 35.8 bits (82), Expect = 0.016
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 6 DLTWTCEAFGV---PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPA 62
LT C+ G +T R + L E E + + +R + A
Sbjct: 103 QLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTT----VLVR---RDHHGA 155
Query: 63 MYQCRAKNQLKTR 75
+ CR + L+ +
Sbjct: 156 QFSCRTELDLRPQ 168
Score = 34.3 bits (78), Expect = 0.040
Identities = 12/103 (11%), Positives = 23/103 (22%), Gaps = 5/103 (4%)
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC---NPEAAPKPK 120
C + + L V + PL S G+ +T+ C +
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK--QLTLRCQVEGGAPRAQLT 120
Query: 121 FVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTATN 163
V + + + +SC
Sbjct: 121 VVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTEL 163
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 35.6 bits (81), Expect = 0.026
Identities = 19/168 (11%), Positives = 48/168 (28%), Gaps = 20/168 (11%)
Query: 324 WFNVSEHVIGKEVDRYTGRKEASIE---NVLVPWSTYEFKVIAGNELGYGEPSSPSPQYN 380
W+ S++ ++ Y +E + F V + ++ +
Sbjct: 73 WYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKL- 131
Query: 381 TPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLK 440
P AP + L ++W + + + + +R D + +++
Sbjct: 132 QNLVIP-WAPENLTLHKLSESQLELNWNN----RFLNHCLEHLVQYRTDWDHSWTEQSVD 186
Query: 441 EYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPE------SEVVTI 482
+PS Y +V++ + G S +
Sbjct: 187 -----YRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHW 229
Score = 33.2 bits (75), Expect = 0.16
Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 16/120 (13%)
Query: 260 VKSTVGKISTKTTVIVEGP---PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIA 316
++ T ++ P P + + ++ ++ + W + N + +
Sbjct: 115 LQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLN--HCLEHLVQY 172
Query: 317 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
RT+W+ +W S R + S+ + + Y F+V + G S
Sbjct: 173 RTDWDHSWTEQSV----------DYRHKFSLPS-VDGQKRYTFRVRSRFNPLCGSAQHWS 221
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 35.4 bits (81), Expect = 0.029
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L + +AGEY C V T K + V P
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP 120
Score = 34.3 bits (78), Expect = 0.069
Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 13/150 (8%)
Query: 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQL 200
+ +L + + +++G Y C + +L V+ P+ L ++ + + +
Sbjct: 81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPA-SRLLLDQVGMKENEDK-Y 138
Query: 201 RCSAHTEELLDVAYIWTHNGVRIGNMDLN----ELETPNINIDG-----GLLEITNASFA 251
C + + W + + N+DG L++ ++
Sbjct: 139 MCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQED 198
Query: 252 DAGEYECVV--KSTVGKISTKTTVIVEGPP 279
Y+CVV S + + T+
Sbjct: 199 PGTVYQCVVRHASLHTPLRSNFTLTAARHS 228
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 33.8 bits (77), Expect = 0.032
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 133 GGRRKIFENGNLLISPVSRDDSGIYSCTATNVH-GMDESKGRLIV 176
GR I+ N +LLI + ++D+G Y+ +E+ G+ V
Sbjct: 63 SGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 33.5 bits (76), Expect = 0.033
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 102 GEGGNVTIFCNPEAAPKPKFVWKKDGNIIGS--------GGRRKIFENGNLLISPVSRDD 153
G G N+ I + W++ ++ G +I NG+L I ++RDD
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRDD 70
Query: 154 SGIYSCTATNVHGM 167
SG Y+ T + +G
Sbjct: 71 SGTYNVTVYSTNGT 84
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 35.1 bits (80), Expect = 0.036
Identities = 23/195 (11%), Positives = 56/195 (28%), Gaps = 24/195 (12%)
Query: 296 TIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWS 355
+ WT T Y++ +W ++S+ D ++ L +
Sbjct: 21 ILHWTPIPQQSES-TCYEVALLRYGIESWNSISQCSQTLSYDL------TAVTLDLYHSN 73
Query: 356 TYEFKVIA---GNELGYGEPSSPSPQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPR 412
Y +V A + ++ + + G +G + + +
Sbjct: 74 GYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTVG--SVNLEIHNGFILGKIQLPRPKMAP 131
Query: 413 EKQNAPNIY-----YKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQA 467
+ +I+ Y+I RK + ++ + E+ V+V+
Sbjct: 132 AQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHEQFSLLTSG-----EVGEFCVQVKP 186
Query: 468 I--NDVGPGPESEVV 480
+ G S+
Sbjct: 187 SVASRSNKGMWSKEE 201
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 33.1 bits (76), Expect = 0.039
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 13/99 (13%)
Query: 278 PPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVD 337
P P G+ V + + T T A G Y + T + ++ ++
Sbjct: 4 APAFPTGLSAV-LDSSGNTANLTWNAAPG--ANSYNVKRSTKSGGPYTTIATNITS---T 57
Query: 338 RYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
YT + + + Y + V A + S+ +
Sbjct: 58 NYT-------DTGVATGTKYYYVVSAVSNGVETLNSAEA 89
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 34.9 bits (80), Expect = 0.040
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 34/140 (24%)
Query: 10 TCEAFGV----PDVTYSWFRNG-ELLNSETL-PLEDQDRYFIQDNVLTIRYLNPERDPAM 63
TC + P+V +SWF + E+ ++T P + + + L I + +
Sbjct: 38 TCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWL-NGKT 96
Query: 64 YQCRAKNQ----------LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFC-- 111
++C+ + K + +V T+ P E V+I C
Sbjct: 97 FKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPP-------KEEMTQS--QVSITCMV 147
Query: 112 ---NPEAAPKPKFVWKKDGN 128
P WK +G
Sbjct: 148 KGFYPPDI---YTEWKMNGQ 164
Score = 31.4 bits (71), Expect = 0.52
Identities = 28/211 (13%), Positives = 53/211 (25%), Gaps = 44/211 (20%)
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN----PEAAPKPKFVWKKDGNIIGS 132
S V P K T + C + P+ +F W D + +
Sbjct: 12 GSEVSSVFIFPPKTKDVLGGGLT-------PKVTCVVVDISQNDPEVRFSWFIDDVEVHT 64
Query: 133 G--GRRKIFENGN------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYE 184
+ N L I + + C + + I +
Sbjct: 65 AQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNS-GAFPAPIEKSISKPEGTPRG 123
Query: 185 Q----LPPKITIAAHRNLQLRCSAHTEELL------DVAYIWTHNGVRIGNMDLNELETP 234
+ P + + C ++ D+ W NG N + P
Sbjct: 124 PQVYTMAPPKEEMTQSQVSITC------MVKGFYPPDIYTEWKMNGQPQENY---KNTPP 174
Query: 235 NINIDG-----GLLEITNASFADAGEYECVV 260
++ DG L + ++ + C V
Sbjct: 175 TMDTDGSYFLYSKLNVKKETWQQGNTFTCSV 205
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 32.5 bits (74), Expect = 0.073
Identities = 22/92 (23%), Positives = 29/92 (31%), Gaps = 18/92 (19%)
Query: 103 EGGNVTIFCN-PEAAPKPKFVWKKDGN----IIGSGGRRKIF------------ENGNLL 145
G NVT+ + P + W N + IF NG L
Sbjct: 17 TGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALH 76
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIVL 177
IS V ++D G Y +E K L V
Sbjct: 77 ISNVRKEDKGTYYMR-VLRETENELKITLEVF 107
Score = 28.3 bits (63), Expect = 2.6
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 188 PKITIAAHRNLQLRCSAHTEELLDVAYIWTHN-GVRIGNMDLNELETPN---------IN 237
P I N+ L+ W H +I + N +T +
Sbjct: 11 PDINAYTGSNVTLKIHKDPLGPYRR-ITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE 69
Query: 238 IDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
+ G L I+N D G Y V K T+ V P
Sbjct: 70 ENNGALHISNVRKEDKGTYYMRVLRETEN-ELKITLEVFDP 109
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 32.9 bits (74), Expect = 0.077
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 116 APKPKFVWKK--DGNIIGSGGRRKIFENGN------LLISPVSRDDSGIYSCTATNVHGM 167
A +P W K + R+ ++ L PV +D+G Y C+A +
Sbjct: 39 ANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNL 98
Query: 168 DESKGRLI 175
ES +
Sbjct: 99 IESHSTTL 106
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 34.0 bits (77), Expect = 0.081
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 282 PGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIART-NWNSTWFNVSEHVIGKEVDRYT 340
P +QVV V I W + H + ART + TW +
Sbjct: 109 PISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEA------PLLTLKQ 162
Query: 341 GRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSP 375
++ +E L P + YEF+V G SP
Sbjct: 163 KQEWICLET-LTPDTQYEFQVRVKPLQGEFTTWSP 196
Score = 29.4 bits (65), Expect = 2.2
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 401 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVR--IPSEFYY 458
+ISWE ++ ++ T ++ L + P
Sbjct: 120 HRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTP----D 175
Query: 459 TEYEVKVQAINDVGPG 474
T+YE +V+ G
Sbjct: 176 TQYEFQVRVKPLQGEF 191
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 33.6 bits (76), Expect = 0.10
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 401 GDLSISWEP---LPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFY 457
G ISW P + Y++ +R + D S K +V +P EF
Sbjct: 113 GQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFR 172
Query: 458 -YTEYEVKVQAINDVGPG 474
+ YE++V+A G
Sbjct: 173 KDSSYELQVRAGPMPGSS 190
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 33.4 bits (76), Expect = 0.11
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 11/118 (9%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTI 109
L I+ PE D A Y C ++ LT+ P+ + +
Sbjct: 74 LYIKGSQPE-DSATYLCARNTG--NQFYFGTGTSLTVIPNIQNPDPAVYQLRDSKSSDKS 130
Query: 110 FC-----NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
C + + K I + S V+ + ++C
Sbjct: 131 VCLFTDFDSQTN---VSQSKDSDAYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANA 185
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 33.7 bits (77), Expect = 0.12
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 17/98 (17%)
Query: 10 TCEAFGV----PDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
TC + P+V +SWF + +++ E + F + L I + + +
Sbjct: 251 TCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWL-NGKE 309
Query: 64 YQCRAKNQL----------KTRYSSAQLRVLTLKPSFK 91
++CR + KT+ +V T+ P +
Sbjct: 310 FKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKE 347
Score = 30.3 bits (68), Expect = 1.8
Identities = 31/234 (13%), Positives = 59/234 (25%), Gaps = 38/234 (16%)
Query: 18 DVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYS 77
VT +W T P Q + + +T+ + R C + S
Sbjct: 150 PVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVP--SSPRPSETVTCNVAHP----AS 203
Query: 78 SAQLRVLTLKPSFKKRPLESETYAG---------------EGGNVTIFC-----NPEAAP 117
S ++ + +P + C + + P
Sbjct: 204 STKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKD-DP 262
Query: 118 KPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSR--------DDSGIYSCTATNVHGMDE 169
+ +F W D + + + E N VS + + C +
Sbjct: 263 EVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAP 322
Query: 170 SKGRLIVLHGPSYY---EQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNG 220
+ + G +PP A + L C D+ W +G
Sbjct: 323 IEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDG 376
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 33.3 bits (76), Expect = 0.13
Identities = 24/139 (17%), Positives = 37/139 (26%), Gaps = 25/139 (17%)
Query: 10 TCEAFGV---PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
TC G+ VT++W + + P D + +VL + C
Sbjct: 25 TCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWN-HGKTFTC 83
Query: 67 RAKNQLKTRYSSAQLRVLTLKPSFKKR-------PLESETYAGEGGNVTIFC-----NPE 114
A S L K R P E E VT+ C +P+
Sbjct: 84 TAAYP----ESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNE--LVTLTCLARGFSPK 137
Query: 115 AAPKPKFVWKKDGNIIGSG 133
W + +
Sbjct: 138 DV---LVRWLQGSQELPRE 153
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 32.5 bits (74), Expect = 0.13
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 21/84 (25%)
Query: 103 EGGNVTIFCN----------------PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--- 143
EG N T C+ P + + + + R +I + N
Sbjct: 23 EGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHD 82
Query: 144 --LLISPVSRDDSGIYSCTATNVH 165
+ I R+DSGIY C A ++H
Sbjct: 83 FHMNILDTRRNDSGIYLCGAISLH 106
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 32.6 bits (74), Expect = 0.17
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 12/121 (9%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQLKTRYSS---AQLRVLTLKPSFKKRPLESETYAGEGGN 106
L + D A+Y C T Y Q +LT+ P+ + +
Sbjct: 72 LILHRATLR-DAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNPDPAVYQLRDSKSS 130
Query: 107 VTIFC-----NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTA 161
C + + K I + S V+ + ++C
Sbjct: 131 DKSVCLFTDFDSQTN---VSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACAN 187
Query: 162 T 162
Sbjct: 188 A 188
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.4 bits (71), Expect = 0.21
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 243 LEITNASFADAGEYECVVKST 263
L + N D G Y+C++
Sbjct: 71 LRLHNLQIKDKGLYQCIIHHK 91
Score = 27.5 bits (61), Expect = 4.0
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 140 ENGNLLISPVSRDDSGIYSC 159
++ L + + D G+Y C
Sbjct: 67 DSWTLRLHNLQIKDKGLYQC 86
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 33.0 bits (75), Expect = 0.21
Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 28/137 (20%)
Query: 10 TCEAFGV----PDVTYSWFRNGELLNS--ETLPLEDQDRYFIQDNVLTIRYLNPERDPAM 63
TC V PDV SWF N +++ ED + + L I++ +
Sbjct: 261 TCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWM-SGKE 319
Query: 64 YQCRAKNQ----------LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN- 112
++C+ N+ K + S +V L P E VT+ C
Sbjct: 320 FKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPP-------EEEMT--KKQVTLTCMV 370
Query: 113 PEAAPKPKFV-WKKDGN 128
+ P+ +V W +G
Sbjct: 371 TDFMPEDIYVEWTNNGK 387
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 32.6 bits (74), Expect = 0.23
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 28/173 (16%)
Query: 10 TCEAFGVPDVTYSWFRNG-ELLNSETLPLEDQ-DRYFIQDNVLTIRYLNPERDPAMYQCR 67
+ P+V ++W+ +G E+ N++T P E+Q + + +VLT+ + + + Y+C+
Sbjct: 49 VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL-NGKEYKCK 107
Query: 68 AKNQLKTRYSSAQLRVLTLKPSFKKRP----LESETYAGEGGNVTIFC-----NPEAAPK 118
N+ + + ++ + P L V++ C P
Sbjct: 108 VSNK---ALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDI-- 162
Query: 119 PKFV-WKKDGNIIGSGGRRKIFENGN--------LLISPVSRDDSGIYSCTAT 162
V W+ +G + + + L + ++SC+
Sbjct: 163 --AVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVM 213
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 31.1 bits (70), Expect = 0.25
Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 33/102 (32%)
Query: 103 EGGNVTIFCN----PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN--------------- 143
EG + + C+ W +D +++
Sbjct: 21 EGSSAFLPCSFNASQGRLAIGSVTWFRDE----VVPGKEVRNGTPEFRGRLAPLASSRFL 76
Query: 144 ------LLISPVSRDDSGIYSCTATNVHGMDESKG---RLIV 176
L I V D+ IY C V G+ G RL+V
Sbjct: 77 HDHQAELHIRDVRGHDASIYVC-RVEVLGLGVGTGNGTRLVV 117
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 31.2 bits (71), Expect = 0.28
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 21/84 (25%)
Query: 103 EGGNVTIFCN----------------PEAAPKPKFVWKKDGNIIGSGGRRKIFENG---- 142
EG N T C+ P + + + + R +I +
Sbjct: 13 EGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHD 72
Query: 143 -NLLISPVSRDDSGIYSCTATNVH 165
++ I R+DSGIY C A ++H
Sbjct: 73 FHMNILDTRRNDSGIYLCGAISLH 96
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 32.8 bits (74), Expect = 0.28
Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 9/163 (5%)
Query: 24 FRNGELLNSETLPLE-DQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR 82
L+N PLE QD + + + Y C + +R
Sbjct: 37 RDFEALMNQHQDPLEVTQDVTREWAKKVVWKREKASKINGAYFCEGRV------RGEAIR 90
Query: 83 VLTLK-PSFKKRPLESETY-AGEGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFE 140
+ T+K + T +G NV I + V K+G+ I S R ++ +
Sbjct: 91 IRTMKMRQQASFLPATLTMTVDKGDNVNISFKKVLIKEEDAVIYKNGSFIHSVPRHEVPD 150
Query: 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYY 183
+ + D+G+YS + + RLIV +
Sbjct: 151 ILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQK 193
Score = 32.4 bits (73), Expect = 0.32
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 10/109 (9%)
Query: 152 DDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLD 211
+G Y C R+ + LP +T+ + + S + +
Sbjct: 73 KINGAYFCEGRV----RGEAIRIRTMKMRQQASFLPATLTMTVDKGDNVNISFKKVLIKE 128
Query: 212 VAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVV 260
+ NG I ++ +E+ D + + +A DAG Y
Sbjct: 129 EDAVIYKNGSFIHSVPRHEVP------DILEVHLPHAQPQDAGVYSARY 171
Score = 32.0 bits (72), Expect = 0.44
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 219 NGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
+G + D N + + I D+G + C V + G + + V+
Sbjct: 367 DGTVLHPKDFNH----TDHFSVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVKVL 422
Query: 279 P 279
P
Sbjct: 423 P 423
Score = 28.9 bits (64), Expect = 4.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
I + DSG++ C+ V GM E + V
Sbjct: 389 IHRILPPDSGVWVCSVNTVAGMVEKPFNISV 419
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 32.5 bits (74), Expect = 0.31
Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 10 TCEAFGV----PDVTYSWFRNGELLNSETL--PLEDQDRYFIQDNVLTIRYLNPERDPAM 63
TC V P+V ++W+ +G +++ E + + +VLT+ + + +
Sbjct: 270 TCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL-NGKE 328
Query: 64 YQCRAKN 70
Y+C+ N
Sbjct: 329 YKCKVSN 335
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 31.8 bits (72), Expect = 0.32
Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 10 TCEAFGV----PDVTYSWFRNG-ELLNSETLPLEDQ-DRYFIQDNVLTIRYLNPERDPAM 63
TC V P+V ++W+ +G E+ N++T P E+Q + + +VLT+ + + +
Sbjct: 24 TCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL-NGKE 82
Query: 64 YQCRAKNQLKTRYSSAQLRVLTLKPSFKKRP----LESETYAGEGGNVTIFC-----NPE 114
Y+C+ N+ + + ++ + P L V++ C P
Sbjct: 83 YKCKVSNK---ALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPS 139
Query: 115 AAPKPKFV-WKKDGN 128
V W+ +G
Sbjct: 140 DI----AVEWESNGQ 150
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 31.1 bits (70), Expect = 0.33
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 243 LEITNASFADAGEYEC-VVKSTVGKISTKTTVIV 275
L + + D G Y C G + T + V
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 29.2 bits (65), Expect = 1.5
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 131 GSGGRRKIFENGNLLISPVSRDDSGIYSCT-ATNVHGMDESKGRLIV 176
++ L + ++ +D G Y+C AT G L V
Sbjct: 82 TGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 31.1 bits (70), Expect = 0.33
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 243 LEITNASFADAGEYECVVKST--VGKISTKTTVIV-EGPP 279
+ I N ++D G + C VK+ + +++ T+ V E P
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122
Score = 29.6 bits (66), Expect = 1.2
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 141 NGNLLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVLHGP 180
+G+++I + D+G ++C N + L V
Sbjct: 80 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 31.0 bits (69), Expect = 0.34
Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 12/121 (9%)
Query: 279 PGLPGGVQVVEVHKT--SATIQWTDGATNGRPITHYKI---IARTNWNSTWFNVSEHVIG 333
PG V + K + W + I Y I + I
Sbjct: 5 SSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIY 64
Query: 334 KEVDRYTGRKEASIENVLVPWST---YEFKVIAGNELGYGEPSSPSPQYNTPADKPYQAP 390
+ + N + +++ F++ A NE GYG P+ Q P
Sbjct: 65 CGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYG----PATQIRWLQGNSKSGP 120
Query: 391 S 391
S
Sbjct: 121 S 121
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 30.7 bits (69), Expect = 0.34
Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 24/91 (26%)
Query: 97 SETYAGEGGNVTIFC--NPEAAPKPKFV-WKKDGN-------IIGSGGRRKIFE------ 140
G+V I C +P + V W + S G
Sbjct: 9 ESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRL 68
Query: 141 --------NGNLLISPVSRDDSGIYSCTATN 163
+ +L I+ + DD Y+C T
Sbjct: 69 KVSHKVPGDVSLQINTLQMDDRNHYTCEVTW 99
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 30.3 bits (68), Expect = 0.43
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 25/82 (30%)
Query: 103 EGGNVTIFCN---PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---------------- 143
G N + C+ P + W K + +
Sbjct: 8 VGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL 67
Query: 144 ------LLISPVSRDDSGIYSC 159
L+I V+ DD G Y C
Sbjct: 68 NKGDVSLIIKNVTLDDHGTYCC 89
Score = 28.4 bits (63), Expect = 2.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 243 LEITNASFADAGEYECVVK 261
L I N + D G Y C ++
Sbjct: 74 LIIKNVTLDDHGTYCCRIQ 92
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 30.4 bits (68), Expect = 0.52
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 403 LSISWE-PLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEY 461
+ W+ P +K + + Y++ +KN L PS ++
Sbjct: 33 CLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSSEPRAKH 92
Query: 462 EVKVQA 467
VK++A
Sbjct: 93 SVKIRA 98
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 29.9 bits (67), Expect = 0.75
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
L I N+ +D+G Y C V+ K T ++ P
Sbjct: 75 LTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111
Score = 28.7 bits (64), Expect = 1.7
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 23/87 (26%)
Query: 96 ESETYAGEGGNVTIFCNPEAAPKPKFV-WKKDG--------NIIGSGGRRKIF------- 139
E G VT+ C W + +I + G R +
Sbjct: 4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 140 -----ENGN--LLISPVSRDDSGIYSC 159
G+ L I DSG+Y C
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCC 90
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 30.5 bits (68), Expect = 0.81
Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 16/120 (13%)
Query: 260 VKSTVGKISTKTTVIVEGP---PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIA 316
++ T ++ P P + + ++ ++ + W + + +
Sbjct: 77 LQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNN--RFLNHCLEHLVQY 134
Query: 317 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
RT+W+ +W S R + S+ + + Y F+V + G S
Sbjct: 135 RTDWDHSWTEQSV----------DYRHKFSLPS-VDGQKRYTFRVRSRFNPLCGSAQHWS 183
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 29.5 bits (66), Expect = 0.90
Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 24/88 (27%)
Query: 96 ESETYAGEGGNVTIFCN--PEAAPKPKFVWKKDGN--------IIGSGGRRKIF------ 139
E G VT+ C+ + + W K ++ + G R I
Sbjct: 3 EDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKY 62
Query: 140 ------ENGN--LLISPVSRDDSGIYSC 159
+ G L IS +R DSG+Y C
Sbjct: 63 TLLGKVQFGEVSLTISNTNRGDSGVYCC 90
Score = 27.2 bits (60), Expect = 6.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 243 LEITNASFADAGEYECVVK 261
L I+N + D+G Y C ++
Sbjct: 75 LTISNTNRGDSGVYCCRIE 93
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 30.7 bits (68), Expect = 1.2
Identities = 10/77 (12%), Positives = 18/77 (23%), Gaps = 12/77 (15%)
Query: 3 NQADLTWTCEAFG---VPDVTYSWFRNGELLNSETLPLEDQDRYFIQDN---------VL 50
+A C + W G + ++ + L
Sbjct: 307 GEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHL 366
Query: 51 TIRYLNPERDPAMYQCR 67
+ E+ A Y CR
Sbjct: 367 QPPPVTTEQHGARYACR 383
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 29.4 bits (66), Expect = 1.2
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 26/86 (30%)
Query: 100 YAGEGGNVTIFCN---PEAAPKPKFV---WKKDGN-----IIGSGGRRKIFE-------- 140
G + I C P P + W D + +I SG + + +
Sbjct: 11 QGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAEL 70
Query: 141 -------NGNLLISPVSRDDSGIYSC 159
NLL+ + +DSG Y+
Sbjct: 71 MGNMDHKVCNLLLKDLKPEDSGTYNF 96
Score = 27.9 bits (62), Expect = 3.4
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 15/86 (17%)
Query: 17 PDVTYSWFRNG-----ELLNSETLPL---EDQDRYFIQDNV------LTIRYLNPERDPA 62
+T W+ + +++S L + R + N+ L ++ L PE D
Sbjct: 34 NGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPE-DSG 92
Query: 63 MYQCRAKNQLKTRYSSAQLRVLTLKP 88
Y R + R+ + +T+
Sbjct: 93 TYNFRFEISDSNRWLDVKGTTVTVTT 118
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 29.1 bits (65), Expect = 1.3
Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 22/100 (22%)
Query: 103 EGGNVTIFC--NPEAAPKPKF-----VWKKDGNIIGSGGRRKIFENG------------- 142
E G++T+ C K+ +W+ ++ + G + +
Sbjct: 16 ERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTF 75
Query: 143 NLLISPVSRDDSGIYSCTATNVHGMDESKG-RLIVLHGPS 181
+ + + + D+ Y C G D ++ + P
Sbjct: 76 TVTMEDLMKTDADTYWC-GIEKTGNDLGVTVQVTIDPAPV 114
Score = 28.0 bits (62), Expect = 3.7
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLP 282
+ + + DA Y C ++ T + V ++ P
Sbjct: 77 VTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQ 116
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 30.7 bits (69), Expect = 1.4
Identities = 37/309 (11%), Positives = 71/309 (22%), Gaps = 44/309 (14%)
Query: 19 VTYSWFRNGELLNSETLP--LEDQDRYFIQDNVLTIRYLNPERDPAMYQCRAKNQLKTRY 76
++ +W +G+ + + P + + + LT+ C K+
Sbjct: 159 LSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCL-AGKSVTCHVKHYTNPSQ 217
Query: 77 SSAQLRVLTLKPSFKKRPLESETYAGEGG-----------------NVTIFC---NPEAA 116
+ P + C A
Sbjct: 218 DVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDA 277
Query: 117 PKPKFVWKKDGNIIGSGGRRKIFENGN------LLISPVSRDDSGIYSCTATNVHG---M 167
F W G + G L + ++CTA +
Sbjct: 278 SGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPL 337
Query: 168 DESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD 227
+ + P + PP +A + + L C A DV W +
Sbjct: 338 TATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQEL--PR 395
Query: 228 LNELETPNINIDG---------GLLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGP 278
L + +L + + + C+V T ++
Sbjct: 396 EKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHE-ALPLAFTQKTIDRL 454
Query: 279 PGLPGGVQV 287
G P V V
Sbjct: 455 AGKPTHVNV 463
Score = 29.9 bits (67), Expect = 2.2
Identities = 24/139 (17%), Positives = 41/139 (29%), Gaps = 23/139 (16%)
Query: 10 TCEAFGV---PDVTYSWFRNGELLNSETLPLEDQDRYFIQDNVLTIRYLNPERDPAMYQC 66
TC G+ VT++W + + P D + +VL + C
Sbjct: 268 TCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHG-KTFTC 326
Query: 67 RAKNQ---------LKTRYSSAQLRVLTLKPSFKKRPLESETYAGEGGNVTIFCN-PEAA 116
A L ++ + V L P ++ L VT+ C +
Sbjct: 327 TAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNE--------LVTLTCLARGFS 378
Query: 117 PKPKFV-WKKDGNIIGSGG 134
PK V W + +
Sbjct: 379 PKDVLVRWLQGSQELPREK 397
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.1 bits (64), Expect = 1.4
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 11/71 (15%)
Query: 116 APKPKFVWKK----DGNIIGSGGRRKIF--ENGN-----LLISPVSRDDSGIYSCTATNV 164
+P W K + G + EN + L P+ D+G YSC+
Sbjct: 42 VHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 101
Query: 165 HGMDESKGRLI 175
+ S I
Sbjct: 102 SQVINSHSVTI 112
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 28.8 bits (64), Expect = 1.4
Identities = 17/105 (16%), Positives = 21/105 (20%), Gaps = 24/105 (22%)
Query: 96 ESETYAGEGGNVTIFC--NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---------- 143
+ G VT+ C + W R I+ NG
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 144 ------------LLISPVSRDDSGIYSCTATNVHGMDESKGRLIV 176
L I D G Y C L V
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEV 108
Score = 27.6 bits (61), Expect = 3.8
Identities = 18/106 (16%), Positives = 26/106 (24%), Gaps = 16/106 (15%)
Query: 187 PPKITIAAHRNLQLRCSAHTEELLDVAYIWTHNGVRIGNMD----------LNELETPNI 236
+ A + L C T V W R +
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 237 NIDGGL------LEITNASFADAGEYECVVKSTVGKISTKTTVIVE 276
+ G + L I N D G Y CVV+ + V+
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVK 109
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 30.0 bits (67), Expect = 1.6
Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 25/112 (22%)
Query: 103 EGGNVTIFCNPEAA------------PKPKFVWKKDGNIIGSGGRRKIFENGN----LLI 146
EG + + CN + ++ +G + F + L I
Sbjct: 15 EGADSGLRCNFSTTMKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHI 74
Query: 147 SPVSRDDSGIYSCTATNVHGMDE---SKG-RLIVL-----HGPSYYEQLPPK 189
+DSG Y C A + ++ G L V P+ Y+ P+
Sbjct: 75 KDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPEPAVYQLKDPR 126
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 29.9 bits (66), Expect = 1.8
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 401 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 460
+ + W+P P ++Q N+ Y++ + ++++ + +
Sbjct: 26 AQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESK--------AVTILHMGFS 77
Query: 461 YEVKVQAINDVGPGPESEVVTIWHDP 486
V+ ND S H P
Sbjct: 78 ASVRTILQNDHSLLASSWASAELHAP 103
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 28.5 bits (63), Expect = 1.9
Identities = 20/108 (18%), Positives = 27/108 (25%), Gaps = 24/108 (22%)
Query: 279 PGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIARTNWNSTWFNVSEHVIGKEVDR 338
V V + TS T+ W N +S+ + HV G+
Sbjct: 8 AIQVFDVTAVNISATSLTLIWK---------------VSDNESSSNYTYKIHVAGETDSS 52
Query: 339 Y--TGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSS------PSPQ 378
A I L + Y V G P P P
Sbjct: 53 NLNVSEPRAVIPG-LRSSTFYNITVCPVLGDIEGTPGFLQVHTPPVPS 99
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 29.6 bits (66), Expect = 2.0
Identities = 25/184 (13%), Positives = 51/184 (27%), Gaps = 31/184 (16%)
Query: 103 EGGNVTIFCNPEAAPKPKFVW---------------------KKDGNIIGSGGRRKIFEN 141
EG N T+ CN +P W K +G + +
Sbjct: 17 EGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRY--TATLDADTKQ 74
Query: 142 GNLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHGPSYYEQLPPKITIAAHRNLQLR 201
+L I+ DS Y C ++ + G + P I QLR
Sbjct: 75 SSLHITASQLSDSASYICVVSDRGSTLGR-----LYFGRGTQLTVWPDIQNPDPAVYQLR 129
Query: 202 CSAHTEELLDVA---YIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYEC 258
S +++ + + T+ + + + ++++ ++ C
Sbjct: 130 DSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFAC 189
Query: 259 VVKS 262
Sbjct: 190 ANAF 193
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 28.4 bits (63), Expect = 2.3
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 15/76 (19%)
Query: 215 IWTHNGVRIGNMDLNELETPNINI-------------DGGLLEITNASFADAGEYECVV- 260
WT + P + + L I++ DAG+Y+ +
Sbjct: 33 AWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADIN 92
Query: 261 -KSTVGKISTKTTVIV 275
++ + + + +
Sbjct: 93 TQADPYTTTKRYNLQI 108
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 28.2 bits (62), Expect = 2.5
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 216 WTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGEYECVVKSTVGKISTKTTVI 274
W ++G N+ ++ + L I +A D+G Y + +T GK+ K +
Sbjct: 52 WYNDGPSWSNVSFSD--IYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGKVCNKNFQL 108
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 29.1 bits (65), Expect = 2.6
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 10 TCEAFGV----PDVTYSWFRNG-ELLNSETLPLEDQDRY-FIQDNVLTIRYLNPERDPAM 63
TC V PDV SWF N E+ ++T + + L I++ +
Sbjct: 32 TCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM-SGKE 90
Query: 64 YQCRAKNQ 71
++C+ N+
Sbjct: 91 FKCKVNNK 98
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 28.6 bits (65), Expect = 3.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 167 MDESKGRLIVLHGPS 181
MD KG LIVL GPS
Sbjct: 1 MDNEKGLLIVLSGPS 15
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 28.1 bits (63), Expect = 3.3
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 30/99 (30%)
Query: 104 GGNVTIFC---------------NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGN---LL 145
G V + C + P+ + + G + S N + L
Sbjct: 33 GFTVKMHCYMNSASGNVSWLWKQEMDENPQQ--LKLEKGRMEESQ-------NESLATLT 83
Query: 146 ISPVSRDDSGIYSCTATNVHGMDESKG---RLIVLHGPS 181
I + +D+GIY C + + +G L V+ +
Sbjct: 84 IQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGFST 122
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 28.7 bits (64), Expect = 3.8
Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 28/115 (24%)
Query: 104 GGNVTIFCN---------------PEAAPKPKFVWKKDGNIIGSG--GRRKIFENGN--- 143
G V + C + + F + G+ G +
Sbjct: 16 GQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE 75
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKG------RLIVLHGPSYYEQLPPKITI 192
L + + CT++ H + + +L VL PP++ +
Sbjct: 76 LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLK--NVFPPEVAV 128
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 27.6 bits (62), Expect = 4.0
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 21/96 (21%)
Query: 103 EGGNVTIFCNPEAAP------------KPKFVWKKDGNIIGSGGRRKIFENGN-----LL 145
EG + + CN ++ +G + F++ L
Sbjct: 15 EGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLH 74
Query: 146 ISPVSRDDSGIYSCTATNVHGMDE---SKG-RLIVL 177
I +DSG Y C A G + G +L V+
Sbjct: 75 IRDAQLEDSGTYFCAAEASSGSWQLIFGSGTQLTVM 110
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 28.5 bits (63), Expect = 4.0
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 3/78 (3%)
Query: 401 GDLSISWEPLPREKQNAPNIYYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTE 460
LS + ++ Y++ + K+ +TL G V
Sbjct: 119 EILSANATYQLPPCMPPLDLKYEVAFWKEGAGN---KTLFPVTPHGQPVQITLQPAASEH 175
Query: 461 YEVKVQAINDVGPGPESE 478
+ + + I S+
Sbjct: 176 HCLSARTIYTFSVPKYSK 193
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 28.3 bits (63), Expect = 4.2
Identities = 15/123 (12%), Positives = 30/123 (24%), Gaps = 18/123 (14%)
Query: 50 LTIRYLNPERDPAMYQCRAKNQLKTRYSSAQLR-----VLTLKPSFKKRPLESETYAGEG 104
L ++ L + D A Y C ++ S L + P +
Sbjct: 72 LLLKELQMK-DSASYLC----AVQASGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRDSK 126
Query: 105 GNVTIFC-----NPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSC 159
+ C + + K I + S V+ + ++C
Sbjct: 127 SSDKSVCLFTDFDSQTN---VSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFAC 183
Query: 160 TAT 162
Sbjct: 184 ANA 186
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 28.4 bits (63), Expect = 4.4
Identities = 26/197 (13%), Positives = 53/197 (26%), Gaps = 35/197 (17%)
Query: 103 EGGNVTIFCN--------------PEAAPKPKFVWKKDGNIIGSGGRRKIFENGN----- 143
EG + + CN + ++ +G + F++
Sbjct: 15 EGTDSALRCNFTTTMRSVQWFRQNSRGSLI--SLFYLASGTKENGRLKSAFDSKERRYST 72
Query: 144 LLISPVSRDDSGIYSCTATNVHGMDESKG--RLIVLHGPSYYEQLPPKITIAAHRNLQLR 201
L I +DSG Y C A H + + +V + P A ++
Sbjct: 73 LHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMK 132
Query: 202 CSAHTEELL------DVAYIWTHNGVRIGNMDLNELETPNINIDGGLLEITNASFADAGE 255
+ L+ +V + + I+ G + + D+
Sbjct: 133 NGTNVACLVKDFYPKEVTISLRSSKKIV-----EFDPAIVISPSGKYSAVKLGQYGDSNS 187
Query: 256 YECVVKSTVGKISTKTT 272
C V+ + T
Sbjct: 188 VTCSVQHN-SETVHSTD 203
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 28.4 bits (62), Expect = 4.5
Identities = 24/230 (10%), Positives = 58/230 (25%), Gaps = 27/230 (11%)
Query: 262 STVGKISTKTTVIVEGPPGLPGGVQVVEVHKTSATIQWTDGATNGRPITHYKIIA--RTN 319
+ + V ++ ++ ++ + ++ + K I +
Sbjct: 23 EVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVR 82
Query: 320 WNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPSPQY 379
+ + + + R EA E + + G
Sbjct: 83 VLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNII 142
Query: 380 NTPADKPYQAPSRIGGGGGKIGD-LSISWEPLPREKQNAPNIYY------KIFWRKKNDT 432
+ + P R ++++W E Y K+ K++T
Sbjct: 143 EGTSPEIVVNPVRDFKASEINKKNVTVTWTEP--ETTEGLEGYILYKDGKKVAEIGKDET 200
Query: 433 EFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPGPESEVVTI 482
+ + L + T Y K+ A G E +T+
Sbjct: 201 SYTFKKLNRH----------------TIYNFKIAAKYSNGEVSSKESLTL 234
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 26.9 bits (60), Expect = 4.8
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 17 PDVTYSWFRNGELLN--SETLPLEDQDRYFIQDNVLTIRYLN--PERDPAMYQCR 67
PD++ +NGE++ +T ++ F + ++ PE+ Y C
Sbjct: 33 PDISIELLKNGEVIADAQQTDLAFEKGWQF-----HLTKSVSFKPEKS-DEYSCS 81
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 26.8 bits (59), Expect = 4.9
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 12/61 (19%)
Query: 103 EGGNVTIFCNPEAAPKPKFVWKKDGNIIGSGGRRKIFENGNLLISPVSRDDSGIYSCTAT 162
V + CN W + ++ +L D GIY C T
Sbjct: 8 LEDRVFVNCNTS------ITWVEGTVGTLLSDITRL----DL--GKRILDPRGIYRCNGT 55
Query: 163 N 163
+
Sbjct: 56 D 56
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 27.2 bits (60), Expect = 6.2
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 22/99 (22%)
Query: 103 EGGNVTIFCNPEAAPKPKFV---------WKKDGNIIGSGGRRKIFENG----------- 142
EG +V+I C + +I S G G
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 143 --NLLISPVSRDDSGIYSCTATNVHGMDESKGRLIVLHG 179
+ I+ +S+DDSG Y C L VL
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEH 112
Score = 26.8 bits (59), Expect = 8.1
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 242 LLEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPPGLPG 283
++ I S D+G Y+C + +S ++ V
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL--EHHHH 115
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 27.0 bits (60), Expect = 6.3
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 243 LEITNASFADAGEYECVVKSTVGKISTKTTVIVEGPP 279
+ + + +DAG Y C + K TV + P
Sbjct: 76 VTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVP 112
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 27.3 bits (60), Expect = 6.3
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 21/78 (26%)
Query: 103 EGGNVTIFC--NPEAAPKPKFVWKKDG------NIIGSGGRRKIFENG------------ 142
G +T+ C P + K W K+ ++ S R +
Sbjct: 24 AGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGF 83
Query: 143 -NLLISPVSRDDSGIYSC 159
+ ++ + +DSG Y C
Sbjct: 84 FTVTMTDLREEDSGHYWC 101
>2h6o_A Major outer envelope glycoprotein GP350; viral protein; HET: NAG
MAN BMA NDG GAL FUC; 3.50A {Human herpesvirus 4}
Length = 470
Score = 28.3 bits (62), Expect = 6.4
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 9/117 (7%)
Query: 317 RTNWNSTWFNVSEHVIGKEVDRYTGRKEASIENVLVPWSTYEFKVIAGNELGYGEPSSPS 376
T T + S + + V R+ G ++L + + +G + S
Sbjct: 252 ATPIPGTGYAYSLRLTPRPVSRFLGN-----NSILYVFYSGNGPKASGGDYCIQSNIVFS 306
Query: 377 PQYNTPADKPYQAPSRIGGGGGKIGDLSISWEPLPREKQNAPNIYYKIFWRKKNDTE 433
+ D P G + + E N+PN+ FW N+TE
Sbjct: 307 DEIPASQDMPTNTTDITYVGDNATYSVPMV----TSEDANSPNVTVTAFWAWPNNTE 359
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 27.5 bits (61), Expect = 7.1
Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 24/111 (21%)
Query: 103 EGGNVTIFCNPEAAPKPKFVW--------------KKDGNIIGSGGRRKIFENGN----- 143
EG + C+ E + F W + + GR IF N
Sbjct: 14 EGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFS 73
Query: 144 LLISPVSRDDSGIYSCTATNVH-----GMDESKGRLIVLHGPSYYEQLPPK 189
L I+ DS Y C A++ G I P+ Y+ P+
Sbjct: 74 LHIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQNPEPAVYQLKDPR 124
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 26.8 bits (59), Expect = 8.9
Identities = 16/93 (17%), Positives = 23/93 (24%), Gaps = 29/93 (31%)
Query: 100 YAGEGGNVTIFCN---PEAAPKP----KFVWKKDGNIIGSG-----------------GR 135
EG V + C+ P + W + GN I R
Sbjct: 17 TVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDR 76
Query: 136 RKIF-----ENGNLLISPVSRDDSGIYSCTATN 163
+ +N L I D+G Y
Sbjct: 77 FHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEK 109
>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type
lectin, glycoprotein, cell adhesion, calcium-binding,
heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16
g.75.1.1
Length = 350
Score = 27.7 bits (61), Expect = 9.6
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 27/78 (34%)
Query: 421 YYKIFWRKKNDTEFQSETLKEYGNVGIAVVRIPSEFYYTEYEVKVQAINDVGPG------ 474
+Y + W++ + + + + G G++V + S GPG
Sbjct: 215 FYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVKS---------------TTGPGEHLRNA 259
Query: 475 ------PESEVVTIWHDP 486
+V T+WHDP
Sbjct: 260 LWHTGNTPGQVRTLWHDP 277
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.416
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,011,157
Number of extensions: 490754
Number of successful extensions: 3106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1778
Number of HSP's successfully gapped: 938
Length of query: 505
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 407
Effective length of database: 3,965,535
Effective search space: 1613972745
Effective search space used: 1613972745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.0 bits)