BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14887
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UEN|A Chain A, Solution Structure Of The Third Fibronectin Iii Domain Of
Human Kiaa0343 Protein
Length = 125
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
+P VAP V NST V W+P+ L ++IRG L G+RI YWK + + ++ +
Sbjct: 13 LPMVAPGNVRVNVVNSTLAEVHWDPVPL--KSIRGHLQGYRIYYWKTQSSSKRNRRHIEK 70
Query: 61 T------TRNWALIVGLQPDTKYYVKVMAYNNAGEGPES 93
++ ++ GL+P + Y + V N GEGP S
Sbjct: 71 KILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPAS 109
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
APQ ++ S I+ W P G+ +G+R+KYW + + E A S+
Sbjct: 8 APQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLLDSKVPS- 59
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ L P Y +KV AY GEGP S RT+++ P + P + ++ T +
Sbjct: 60 -VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQL 117
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQD 151
+W P+ I Y+V V+ D
Sbjct: 118 SW--AEPAETNGEITAYEVCYGLVNDD 142
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN--DTIIP 161
APQ P + K +H W + PS + +GY+V+ W S A+ D+ +P
Sbjct: 8 APQNP----NAKAAGSRKIHFNW--LPPSGKP---MGYRVKYWIQGDSESEAHLLDSKVP 58
Query: 162 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 196
++ +L P Y M+V A+ G+G SS
Sbjct: 59 -----SVELTNLYPYCDYEMKVCAYGAQGEGPYSS 88
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
APQ ++ S I+ W P G+ +G+R+KYW + + E A S+
Sbjct: 7 APQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLLDSKVPS- 58
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ L P Y +KV AY GEGP S RT+++ P + P + ++ T +
Sbjct: 59 -VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQL 116
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQD 151
+W P+ I Y+V V+ D
Sbjct: 117 SW--AEPAETNGEITAYEVCYGLVNDD 141
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN--DTIIP 161
APQ P + K +H W + PS + +GY+V+ W S A+ D+ +P
Sbjct: 7 APQNP----NAKAAGSRKIHFNW--LPPSGKP---MGYRVKYWIQGDSESEAHLLDSKVP 57
Query: 162 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 196
++ +L P Y M+V A+ G+G SS
Sbjct: 58 -----SVELTNLYPYCDYEMKVCAYGAQGEGPYSS 87
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
APQ ++ S I+ W P G+ +G+R+KYW + + E A S+
Sbjct: 8 APQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLLDSKVPS- 59
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ L P Y +KV AY GEGP S RT+++ P + P + ++ T +
Sbjct: 60 -VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQL 117
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQD 151
+W P+ I Y+V V+ D
Sbjct: 118 SW--AEPAETNGEITAYEVCYGLVNDD 142
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN--DTIIP 161
APQ P + K +H W + PS + +GY+V+ W S A+ D+ +P
Sbjct: 8 APQNP----NAKAAGSRKIHFNW--LPPSGKP---MGYRVKYWIQGDSESEAHLLDSKVP 58
Query: 162 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 196
++ +L P Y M+V A+ G+G SS
Sbjct: 59 -----SVELTNLYPYCDYEMKVCAYGAQGEGPYSS 88
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
APQ ++ S I+ W P G+ +G+R+KYW + + E A S+
Sbjct: 4 APQNPNAKAAGSRKIHFNWLPPS-------GKPMGYRVKYWIQGDSESEAHLLDSKVPS- 55
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ L P Y +KV AY GEGP S RT+++ P + P + ++ T +
Sbjct: 56 -VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PGRLAFNVVSSTVTQL 113
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQD 151
+W P+ I Y+V V+ D
Sbjct: 114 SW--AEPAETNGEITAYEVCYGLVNDD 138
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN--DTIIP 161
APQ P + K +H W + PS + +GY+V+ W S A+ D+ +P
Sbjct: 4 APQNP----NAKAAGSRKIHFNW--LPPSGKP---MGYRVKYWIQGDSESEAHLLDSKVP 54
Query: 162 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 196
++ +L P Y M+V A+ G+G SS
Sbjct: 55 -----SVELTNLYPYCDYEMKVCAYGAQGEGPYSS 84
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEET--AVYYLS 59
P PQ V ST + V+W P N G + + + Y D + V +S
Sbjct: 18 PSAPPQKVMCVSMGSTTVRVSWVPPPADSRN--GVITQYSVAYEAVDGEDRGRHVVDGIS 75
Query: 60 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH 113
R +W L VGL+ T+Y V V A+ + G GPES L RT P PP V
Sbjct: 76 REHSSWDL-VGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVE 128
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 99 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 158
RT + P PP V + TTV V+W I Y V VD + R
Sbjct: 12 RTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGE-DRGRHV 70
Query: 159 IIPVGNTLDA-DIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSP 214
+ + + D+V L Y + V A ++ G G SSP + +++ SG P
Sbjct: 71 VDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRT---DEDVPSGPP 124
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 89/207 (42%), Gaps = 13/207 (6%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTW--NPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL 58
+P + P GV + + I +TW N + ++ R R WK + P T
Sbjct: 3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVR---WKTNIPANTKYKNA 59
Query: 59 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHI--KG 116
+ TT ++ L+ GL+P+T Y VM S T+ P PP V + K
Sbjct: 60 NATTLSY-LVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKE 118
Query: 117 INPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP-VGNTLDADIVDLSP 175
P T+ V W+ PS I GY + + D + + I P VGN L I +L+
Sbjct: 119 GKPKTIIVNWQ--PPSEANGKITGY-IIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTL 175
Query: 176 GKRYHMRVLAFSNGGDGRMSSPAITFQ 202
Y+ ++ A ++ G G MS A+ F+
Sbjct: 176 DTPYYFKIQARNSKGMGPMSE-AVQFR 201
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 25/103 (24%)
Query: 9 VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWAL- 67
V S+ I V W P G++ G+ I Y + N E +W +
Sbjct: 114 VVSKEGKPKTIIVNWQP----PSEANGKITGYIIYYSTDVNAE----------IHDWVIE 159
Query: 68 -IVG---------LQPDTKYYVKVMAYNNAGEGPESERYLERT 100
+VG L DT YY K+ A N+ G GP SE RT
Sbjct: 160 PVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT 202
>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1
Length = 119
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P AP V + +S+ I+V W E + E I + ++I+YW + EE A +
Sbjct: 18 PSEAPTEVGVKVLSSSEISVHW---EHVLEKI---VESYQIRYWAAHDKEEAANRVQVTS 71
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 104
A + L PDT+Y+++V A N+AG GP S+ +E +KA
Sbjct: 72 QEYSARLENLLPDTQYFIEVGACNSAGCGPPSD-MIEAFTKKA 113
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 100 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 159
+ + AP + P+ V +K ++ + + V W +V E+ + Y++R W D A + +
Sbjct: 13 SAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYWAA-HDKEEAANRV 67
Query: 160 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 192
A + +L P +Y + V A ++ G G
Sbjct: 68 QVTSQEYSARLENLLPDTQYFIEVGACNSAGCG 100
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 6 PQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNW 65
PQ + G ++ + W+P L N GR+I + + + ++ +E + TT
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERN--GRIISYTVVFRDINSQQE----LQNITTDTR 65
Query: 66 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 100
+ GL+PDT Y +KV A+ + G GP S RT
Sbjct: 66 FTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 109 PSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDA 168
P +H+ G+ +T + W + II Y V +++ N +
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQN-----ITTDTRF 66
Query: 169 DIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 199
+ L P Y ++V A+++ G G + SP+I
Sbjct: 67 TLTGLKPDTTYDIKVRAWTSKGSGPL-SPSI 96
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEP---IIGYKVR 144
G S L +T +AP P V + ++ TT+ V W+ EEP I GY+V
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKE-----PEEPNGQIQGYRV- 54
Query: 145 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 196
+ +D N V ++ I +L P K Y ++VLAF++ GDG +SS
Sbjct: 55 YYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSS 106
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P AP+ V +R +ST I V W E G++ G+R+ Y+ D + +
Sbjct: 18 PSSAPRDVQARMLSSTTILVQWKE----PEEPNGQIQGYRV-YYTMDPTQHVNNWMKHNV 72
Query: 62 TRNWALIVG-LQPDTKYYVKVMAYNNAGEGPES 93
+ +G L P Y VKV+A+ + G+GP S
Sbjct: 73 ADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLS 105
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
+P APQ + NS +I + W P +N G++ G++I+Y K + +S
Sbjct: 17 VPSAAPQNLSLEVRNSKSIMIHWQPPAPATQN--GQITGYKIRYRKASRKSDVTETLVSG 74
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTY 101
T + LI GL T+Y +V A G GP ++ T+
Sbjct: 75 TQLS-QLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETF 114
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 99 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 158
RT P P + ++ N ++ + W+ +P+ + I GYK+R + + S +T
Sbjct: 12 RTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASR-KSDVTET 70
Query: 159 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 192
++ G L I L G Y+ RV A + G G
Sbjct: 71 LVS-GTQLSQLIEGLDRGTEYNFRVAALTINGTG 103
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 27/176 (15%)
Query: 34 RGRLIGHRIKYWKED---NPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 90
R + G+RI++ E P E V + +RN + L P T+Y V ++A N E
Sbjct: 210 RATITGYRIRHHPEHFSGRPREDRVPH----SRNSITLTNLTPGTEYVVSIVALNGREES 265
Query: 91 PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ 150
P L + P + + PT++ ++W + P + VR + +
Sbjct: 266 P-----LLIGQQSTVSDVPRDLEVVAATPTSLLISW--------DAPAV--TVRYYRITY 310
Query: 151 DMSRANDTI----IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
+ N + +P G+ A I L PG Y + V A + GD SS I+
Sbjct: 311 GETGGNSPVQEFTVP-GSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISIN 365
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 102
+++ A I GL+P Y + V A G+ P S + + YR
Sbjct: 327 SKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 367
>pdb|3N1G|C Chain C, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1G|D Chain D, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1M|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1P|C Chain C, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 111
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 37/96 (38%)
Query: 105 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 164
P P +N TT+ + W Y+ S PI G+ + D D + G+
Sbjct: 6 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD 65
Query: 165 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
I L P Y +++ F+ GG+ S+ I
Sbjct: 66 KYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMIC 101
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIREN--IRGRLIGHRIKYWKEDNPEETAVYY-- 57
P P F+ N T I + W I N I G I Y++ + + + Y
Sbjct: 6 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYI-----YYRPTDSDNDSDYKKD 60
Query: 58 LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE 89
+ + W I LQP+T Y +K+ +N GE
Sbjct: 61 MVEGDKYWHSISHLQPETSYDIKMQCFNEGGE 92
>pdb|1X4Y|A Chain A, Solution Structure Of The 3rd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 114
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 37/98 (37%)
Query: 103 KAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV 162
P P +N TT+ + W Y+ S PI G+ + D D +
Sbjct: 6 SGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVE 65
Query: 163 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
G+ I L P Y +++ F+ GG+ S+ I
Sbjct: 66 GDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMIC 103
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIREN--IRGRLIGHRIKYWKEDNPEETAVYY-- 57
P P F+ N T I + W I N I G I Y++ + + + Y
Sbjct: 8 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYI-----YYRPTDSDNDSDYKKD 62
Query: 58 LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ R W I LQP+T Y +K+ +N GE S + T KA P S
Sbjct: 63 MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET--KARSGPSSG 114
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
+P PQ V NS +I V+W P +N G + G++I++ K E +
Sbjct: 27 VPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQN--GFITGYKIRHRKTTRRGEMETLEPNN 84
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 100
W L GL+ ++Y +V A G GP S Y T
Sbjct: 85 L---WYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAET 121
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 85 NNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVR 144
N G G ++ T P PP V ++ +N ++ V+W + I GYK+R
Sbjct: 8 NRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIR 67
Query: 145 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 192
+ +R + N L L G +Y +V A + G G
Sbjct: 68 ----HRKTTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTG 111
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 50/138 (36%), Gaps = 5/138 (3%)
Query: 71 LQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVS 130
LQP T Y +V N G GP SE +T P A+ I +P H+TW
Sbjct: 53 LQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISK-SPDGAHLTWE--P 109
Query: 131 PSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGG 190
PS II Y V+ Q + L V P ++ + SN
Sbjct: 110 PSVTSGKIIEY--SVYLAIQSSQAGGELKSSTPAQLAFXRVYCGPSPSCLVQSSSLSNAH 167
Query: 191 DGRMSSPAITFQMGEEKE 208
+ PAI F++ E
Sbjct: 168 IDYTTKPAIIFRIAARNE 185
>pdb|1X5I|A Chain A, The Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 126
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 17 TAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTK 76
T+I V+W P E +RG IG+ I + + V Y R + I L P +
Sbjct: 41 TSIVVSWTPPENQNIVVRGYAIGYGIG---SPHAQTIKVDYKQR----YYTIENLDPSSH 93
Query: 77 YYVKVMAYNNAGEG-PESERYLERTYRKAPQK 107
Y + + A+NN GEG P E + R + P
Sbjct: 94 YVITLKAFNNVGEGIPLYESAVTRPHTSGPSS 125
>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1
Protein
Length = 122
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 100 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 159
T AP PP V ++ + ++ VTW+ + I GY++ E + S +I
Sbjct: 10 TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRE-NSPGSNGQYSI 68
Query: 160 IPVGNTLDADIVDLSPGKR---YHMRVLAFSNGGDGRMSSP--AITFQMG 204
+ + T D+++ L K+ Y + V AF+ G G SS A T + G
Sbjct: 69 VEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESG 118
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNP--IELIRENIRGRLIGHRIKYWKEDNPEETAVYYL- 58
P P V + S +I VTW EL IRG IG+R E++P Y +
Sbjct: 15 PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYR-----ENSPGSNGQYSIV 69
Query: 59 -SRTTRNWAL--IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAP 105
+ T + + + L+ +Y V V A+N AG GP S T P
Sbjct: 70 EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGP 119
>pdb|4GH7|B Chain B, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
pdb|4GH7|D Chain D, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
Length = 285
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 34/178 (19%)
Query: 14 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWK--------EDNPEETAVYYLSRTTRNW 65
++I + W P+ +IG+RI ED + + YY
Sbjct: 107 ITDSSIGLRWTPLN------SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYT------- 153
Query: 66 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVT 125
+ GL+P Y + V+ N GE + ++ PP+ + I P T+ VT
Sbjct: 154 --VTGLEPGIDYDISVITLINGGESAPTTLT-----QQTAVPPPTDLRFTNIGPDTMRVT 206
Query: 126 WRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV 183
W PS + + + VR V + A +I P N + + +L PG Y + V
Sbjct: 207 WAP-PPSID---LTNFLVRYSPVKNEEDVAELSISPSDNAV--VLTNLLPGTEYVVSV 258
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 120 TTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY 179
T+V + W+ P I+ Y+++ +E D++M ++ T+ V T A + L PG RY
Sbjct: 25 TSVSLLWQ--EPEQPNGIILEYEIKYYEKDKEM-QSYSTLKAV--TTRATVSGLKPGTRY 79
Query: 180 HMRVLAFSNGGDGRMS 195
+V A ++ G GR S
Sbjct: 80 VFQVRARTSAGCGRFS 95
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 17 TAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTK 76
T++++ W E G ++ + IKY+++D ++ + TTR A + GL+P T+
Sbjct: 25 TSVSLLWQEPE----QPNGIILEYEIKYYEKDKEMQSYSTLKAVTTR--ATVSGLKPGTR 78
Query: 77 YYVKVMAYNNAGEG 90
Y +V A +AG G
Sbjct: 79 YVFQVRARTSAGCG 92
>pdb|2E3V|A Chain A, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|B Chain B, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|C Chain C, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
Length = 122
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 68 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 121
IVGL+P+T Y V++ A N G G E ++ P + PSA ++G P++
Sbjct: 71 IVGLKPETTYAVRLAALNGKGLG---EISAASEFKTQPVREPSAPKLEGSGPSS 121
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 34/178 (19%)
Query: 14 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWK--------EDNPEETAVYYLSRTTRNW 65
++I + W P+ +IG+RI ED + + YY
Sbjct: 107 ITDSSIGLRWTPLN------SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYT------- 153
Query: 66 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVT 125
+ GL+P Y + V+ N GE + ++ PP+ + I P T+ VT
Sbjct: 154 --VTGLEPGIDYDISVITLINGGESAPTTLT-----QQTAVPPPTDLRFTNIGPDTMRVT 206
Query: 126 WRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV 183
W PS + + + VR V + A +I P N + + +L PG Y + V
Sbjct: 207 WAP-PPSID---LTNFLVRYSPVKNEEDVAELSISPSDNAV--VLTNLLPGTEYVVSV 258
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 34 RGRLIGHRIKYWKED---NPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG 90
R + G+RI++ E P E V + +RN + L P T+Y V ++A N E
Sbjct: 302 RATITGYRIRHHPEHFSGRPREDRVPH----SRNSITLTNLTPGTEYVVSIVALNGREES 357
Query: 91 P 91
P
Sbjct: 358 P 358
>pdb|2GEE|A Chain A, Crystal Structure Of Human Type Iii Fibronectin
Extradomain B And Domain 8
Length = 203
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 34/178 (19%)
Query: 14 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWK--------EDNPEETAVYYLSRTTRNW 65
++I + W P+ +IG+RI ED + + YY
Sbjct: 34 ITDSSIGLRWTPLN------SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYT------- 80
Query: 66 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVT 125
+ GL+P Y + V N GE + ++ PP+ + I P T+ VT
Sbjct: 81 --VTGLEPGIDYDISVYTVKNGGESTPTTLT-----QQTAVPPPTDLRFTNIGPDTMRVT 133
Query: 126 WRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV 183
W PS + + + VR V + A +I P N + + +L PG Y + V
Sbjct: 134 WA-PPPSID---LTNFLVRYSPVKNEEDVAELSISPSDNAV--VLTNLLPGTEYVVSV 185
>pdb|3D1M|C Chain C, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3D1M|D Chain D, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3N1F|C Chain C, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|D Chain D, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1Q|C Chain C, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|D Chain D, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|F Chain F, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 102
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIREN--IRGRLIGHRIKYWKEDNPEETAVYYLS 59
P P ++ + T I + W I N I+G I +R D+ + V
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVV--- 60
Query: 60 RTTRNWALIVGLQPDTKYYVKVMAYNNAGE 89
++ W +I LQP+T Y +K+ +N GE
Sbjct: 61 EGSKQWHMIGHLQPETSYDIKMQCFNEGGE 90
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 38/97 (39%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 163
P P + + ++ T + + W Y+ S PI G+ + D D + G
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
+ I L P Y +++ F+ GG+ S+ I
Sbjct: 63 SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMIC 99
>pdb|2IBG|A Chain A, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|B Chain B, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|C Chain C, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|D Chain D, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
Length = 214
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ--DMSRANDTI------ 159
PP+ ++ ++ +V + W + P + PI+ +KV+ V + + ND I
Sbjct: 4 PPTPPNVTRLSDESVMLRW--MVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 160 --IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 203
+G + A + DL P Y R+LA + D + S+ + F +
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 107
>pdb|2IBB|A Chain A, Crystal Structure Of The First And Second Fniii Domains Of
Ihog
Length = 213
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ--DMSRANDTI------ 159
PP+ ++ ++ +V + W + P + PI+ +KV+ V + + ND I
Sbjct: 4 PPTPPNVTRLSDESVMLRW--MVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 160 --IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 203
+G + A + DL P Y R+LA + D + S+ + F +
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 107
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 2 PQVAPQG--VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN-PEETAVYYL 58
P AP+ V +R A+ V+W P G++ + + Y + N P + +
Sbjct: 8 PTSAPKDLTVITREGKPRAVIVSWQP----PLEANGKITAYILFYTLDKNIPIDDWIMET 63
Query: 59 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 102
R I+ L DT YY ++ A N+ G GP S+ L RT +
Sbjct: 64 ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLK 107
>pdb|2IC2|A Chain A, Crystal Structure Of The First Fniii Domain Of Ihog
pdb|2IC2|B Chain B, Crystal Structure Of The First Fniii Domain Of Ihog
Length = 115
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ--DMSRANDTI------ 159
PP+ ++ ++ +V + W P + PI+ +KV+ V + + ND I
Sbjct: 5 PPTPPNVTRLSDESVXLRWXV--PRNDGLPIVIFKVQYRXVGKRKNWQTTNDNIPYGKPK 62
Query: 160 --IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 203
+G + A + DL P Y R+LA + D + S+ + F +
Sbjct: 63 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 108
>pdb|2E7H|A Chain A, Solution Structure Of The Second Fn3 Domain From Human
Ephrin Type-B Receptor 4
Length = 109
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 35 GRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
G ++ + +KY ++ ++V +L +T+ N A + GL+ Y V+V A + AG GP +
Sbjct: 36 GAVLDYEVKYHEKGAEGPSSVRFL-KTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQ 94
Query: 95 RYLERT 100
+ +T
Sbjct: 95 EHHSQT 100
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP + ++ V+W P R R+ G+ IKY K +P V R
Sbjct: 204 APSNLRFLATTPNSLLVSWQPP-------RARITGYIIKYEKPGSPPREVVPR-PRPGVT 255
Query: 65 WALIVGLQPDTKYYVKVMAYNN 86
A I GL+P T+Y + V+A N
Sbjct: 256 EATITGLEPGTEYTIYVIALKN 277
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 32/200 (16%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP + T+++ W P + +L G+R++ ++ L+ + +
Sbjct: 23 APTDLKFTQVTPTSLSAQWTPPNV-------QLTGYRVRVTPKEKTGPMKEINLAPDSSS 75
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
++ GL TKY V V A + ++ + +P P + TT+ +
Sbjct: 76 -VVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP---PRRARVTDATETTITI 131
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDAD-----IVDLSPGKRY 179
+WR + E I G++V D AN P+ T+ D I L PG Y
Sbjct: 132 SWR-----TKTETITGFQV-------DAVPANGQ-TPIQRTIKPDVRSYTITGLQPGTDY 178
Query: 180 HMRVLAFSNGGDGRMSSPAI 199
+ + + D SSP +
Sbjct: 179 KIYLYTLN---DNARSSPVV 195
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP + ++ V+W P R R+ G+ IKY K +P V R
Sbjct: 185 APSNLRFLATTPNSLLVSWQPP-------RARITGYIIKYEKPGSPPREVVPR-PRPGVT 236
Query: 65 WALIVGLQPDTKYYVKVMAYNN 86
A I GL+P T+Y + V+A N
Sbjct: 237 EATITGLEPGTEYTIYVIALKN 258
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 32/200 (16%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP + T+++ W P + +L G+R++ ++ L+ + +
Sbjct: 4 APTDLKFTQVTPTSLSAQWTPPNV-------QLTGYRVRVTPKEKTGPMKEINLAPDSSS 56
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
++ GL TKY V V A + ++ + +P P + TT+ +
Sbjct: 57 -VVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP---PRRARVTDATETTITI 112
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDAD-----IVDLSPGKRY 179
+WR + E I G++V D AN P+ T+ D I L PG Y
Sbjct: 113 SWR-----TKTETITGFQV-------DAVPANGQ-TPIQRTIKPDVRSYTITGLQPGTDY 159
Query: 180 HMRVLAFSNGGDGRMSSPAI 199
+ + + D SSP +
Sbjct: 160 KIYLYTLN---DNARSSPVV 176
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 3 QVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 62
Q P V G ++T+++V+W+ I + R+ + + Y K+ + + Y + RT
Sbjct: 438 QTEPPKVRLEGRSTTSLSVSWS----IPPPQQSRVWKYEVTYRKKGD---SNSYNVRRTE 490
Query: 63 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
+ L PDT Y V+V A G+G S+
Sbjct: 491 GFSVTLDDLAPDTTYLVQVQALTQEGQGAGSK 522
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 3 QVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 62
Q P V G ++T+++V+W+ I + R+ + + Y K+ + + Y + RT
Sbjct: 441 QTEPPKVRLEGRSTTSLSVSWS----IPPPQQSRVWKYEVTYRKKGD---SNSYNVRRTE 493
Query: 63 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
+ L PDT Y V+V A G+G S+
Sbjct: 494 GFSVTLDDLAPDTTYLVQVQALTQEGQGAGSK 525
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 3 QVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 62
Q P V G ++T+++V+W+ I + R+ + + Y K+ + + Y + RT
Sbjct: 438 QTEPPKVRLEGRSTTSLSVSWS----IPPPQQSRVWKYEVTYRKKGD---SNSYNVRRTE 490
Query: 63 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
+ L PDT Y V+V A G+G S+
Sbjct: 491 GFSVTLDDLAPDTTYLVQVQALTQEGQGAGSK 522
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+P G S + + V W R I G +I H ++ P + V +RN
Sbjct: 4 SPTGFDSSDITANSFTVHW---VAPRAPITGYIIRHHAEH-SVGRPRQDRV----PPSRN 55
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ L P T+Y V ++A N E P + T P+ + + PT++ +
Sbjct: 56 SITLTNLNPGTEYVVSIIAVNGREESPPLIGQ-QATVSDIPRD----LEVIASTPTSLLI 110
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI----IPVGNTLDADIVDLSPGKRYH 180
+W E P + VR + + + N + +P G+ A I ++ PG Y
Sbjct: 111 SW--------EPPAV--SVRYYRITYGETGGNSPVQEFTVP-GSKSTATINNIKPGADYT 159
Query: 181 MRVLAFSNGGDGRMSSPAITFQ 202
+ + A + GD SS ++
Sbjct: 160 ITLYAVTGRGDSPASSKPVSIN 181
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 68 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKG 116
IVGL+P+T Y V++ A N G G E ++ P + PSA ++G
Sbjct: 72 IVGLKPETTYAVRLAALNGKGLG---EISAASEFKTQPVREPSAPKLEG 117
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 68 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKG 116
IVGL+P+T Y V++ A N G G E ++ P + PSA ++G
Sbjct: 72 IVGLKPETTYAVRLAALNGKGLG---EISAASEFKTQPVREPSAPKLEG 117
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 20/150 (13%)
Query: 58 LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEG---PESERYLERTYRKAPQKPPSAVHI 114
+SRTT +W + V PD YV V A N G P++E R Y P+ +H+
Sbjct: 217 ISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYW------PADLHM 270
Query: 115 KGINPTTVH-VTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD----AD 169
G + H V W P+F + R++ ++R +GN +D D
Sbjct: 271 IGKDIIRFHTVYW----PAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVD 326
Query: 170 IVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 199
L + + +R + F G DG + AI
Sbjct: 327 TFGLDQVRYFLLREVPF--GQDGSYNEDAI 354
>pdb|3NCC|B Chain B, A Human Prolactin Receptor Antagonist In Complex With The
Mutant Extracellular Domain H188a Of The Human Prolactin
Receptor
pdb|3NCE|B Chain B, A Mutant Human Prolactin Receptor Antagonist H27a In
Complex With The Mutant Extracellular Domain H188a Of
The Human Prolactin Receptor
pdb|3NCF|B Chain B, A Mutant Human Prolactin Receptor Antagonist H30a In
Complex With The Mutant Extracellular Domain H188a Of
The Human Prolactin Receptor
Length = 210
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Query: 77 YYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS-AVHIKGINPTTVHVTWRYVSPSFEE 135
Y + V A N G E Y++ TY P P AV +K ++ W SP
Sbjct: 75 YIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYL-WIKWSPPTLI 133
Query: 136 EPIIGYKVRVWEVDQDMSRANDTIIP-VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM 194
+ G+ ++E+ +A + I G + I+ L PG++Y ++V + G
Sbjct: 134 DLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDAGYWSA 193
Query: 195 SSPAITFQM 203
SPA Q+
Sbjct: 194 WSPATFIQI 202
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 68 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 104
I GL P ++Y +V+A N+ G GP SE RT ++
Sbjct: 65 IGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQS 101
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 25/107 (23%)
Query: 9 VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWAL- 67
V S+ I V W P G++ G+ I Y + N E +W +
Sbjct: 27 VVSKEGKPKTIIVNWQP----PSEANGKITGYIIYYSTDVNAE----------IHDWVIE 72
Query: 68 -IVG---------LQPDTKYYVKVMAYNNAGEGPESERYLERTYRKA 104
+VG L DT YY K+ A N+ G GP SE RT + +
Sbjct: 73 PVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAS 119
>pdb|1CFB|A Chain A, Crystal Structure Of Tandem Type Iii Fibronectin Domains
From Drosophila Neuroglian At 2.0 Angstroms
Length = 205
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
+P P V +G + ++W P+ I N H WK D P A + +
Sbjct: 103 VPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNF---HYYVSWKRDIP---AAAWENN 156
Query: 61 TTRNW---ALIVGLQPD-TKYYVKVMAYNNAGEG 90
+W +++ QP KY +KV+A N+ GE
Sbjct: 157 NIFDWRQNNIVIADQPTFVKYLIKVVAINDRGES 190
>pdb|1X5A|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Mouse Ephrin Type-A Receptor 1
Length = 107
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 66 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
L+ LQPDT Y V+V G GP S + +R +P PS+
Sbjct: 64 VLLTKLQPDTTYIVRVRTLTPLGPGPFSP---DHEFRTSPPSGPSS 106
>pdb|3MZG|B Chain B, Crystal Structure Of A Human Prolactin Receptor Antagonist
In Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3N06|B Chain B, A Mutant Human Prolactin Receptor Antagonist H27a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3N0P|B Chain B, A Mutant Human Prolactin Receptor Antagonist H30a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3NCB|B Chain B, A Mutant Human Prolactin Receptor Antagonist H180a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
Length = 210
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Query: 77 YYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS-AVHIKGINPTTVHVTWRYVSPSFEE 135
Y + V A N G E Y++ TY P P AV +K ++ W SP
Sbjct: 75 YIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYL-WIKWSPPTLI 133
Query: 136 EPIIGYKVRVWEVDQDMSRANDTIIP-VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM 194
+ G+ ++E+ +A + I G + I+ L PG++Y ++V + G
Sbjct: 134 DLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSA 193
Query: 195 SSPAITFQM 203
SPA Q+
Sbjct: 194 WSPATFIQI 202
>pdb|3D48|R Chain R, Crystal Structure Of A Prolactin Receptor Antagonist Bound
To The Extracellular Domain Of The Prolactin Receptor
Length = 211
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Query: 77 YYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS-AVHIKGINPTTVHVTWRYVSPSFEE 135
Y + V A N G E Y++ TY P P AV +K ++ W SP
Sbjct: 76 YIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYL-WIKWSPPTLI 134
Query: 136 EPIIGYKVRVWEVDQDMSRANDTIIP-VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM 194
+ G+ ++E+ +A + I G + I+ L PG++Y ++V + G
Sbjct: 135 DLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSA 194
Query: 195 SSPAITFQM 203
SPA Q+
Sbjct: 195 WSPATFIQI 203
>pdb|1BP3|B Chain B, The Xray Structure Of A Growth Hormone-Prolactin Receptor
Complex
Length = 211
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 3/129 (2%)
Query: 77 YYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS-AVHIKGINPTTVHVTWRYVSPSFEE 135
Y + V A N G E Y++ TY P P AV +K ++ W SP
Sbjct: 75 YIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYL-WIKWSPPTLI 133
Query: 136 EPIIGYKVRVWEVDQDMSRANDTIIP-VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRM 194
+ G+ ++E+ +A + I G + I+ L PG++Y ++V + G
Sbjct: 134 DLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSA 193
Query: 195 SSPAITFQM 203
SPA Q+
Sbjct: 194 WSPATFIQI 202
>pdb|2ED8|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 106
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 17 TAINVTWNPIELIRENIRG-RLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 75
T+I +TW P ++G RL + KE N E + Y + GL+ T
Sbjct: 22 TSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSYK---------LEGLKKFT 72
Query: 76 KYYVKVMAYNNAGEG 90
+Y ++ +AYN G G
Sbjct: 73 EYSLRFLAYNRYGPG 87
>pdb|1WJ3|A Chain A, Solution Structure Of The Fourth Fn3 Domain Of Kiaa1496
Protein
Length = 117
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 100 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 159
T + P +PP V + T V + W V E + GYKV Q+ + +T
Sbjct: 13 TKKTPPSQPPGNV-VWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNT- 70
Query: 160 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS 195
N A++V L + Y + V A ++GGDG S
Sbjct: 71 ----NKTSAELV-LPIKEDYIIEVKATTDGGDGTSS 101
>pdb|1WFN|A Chain A, The Fourth Fn3 Domain Of Human Sidekick-2
Length = 119
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 17 TAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAV-YYLSRTTRNWALIVGLQPDT 75
T++ V+W E +N G L G+RI W+E N T V +YL T + + GL T
Sbjct: 32 TSLKVSWQ--EPGEKN--GILTGYRIS-WEEYNRTNTRVTHYLPNVTLEYR-VTGLTALT 85
Query: 76 KYYVKVMAYNNAGEG 90
Y ++V A + G+G
Sbjct: 86 TYTIEVAAMTSKGQG 100
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 85 NNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVR 144
++ GP+ L RT+ P P + I T++ V+W+ P + + GY++
Sbjct: 2 SSGSSGPQ----LVRTHEDVP-GPVGHLSFSEILDTSLKVSWQ--EPGEKNGILTGYRIS 54
Query: 145 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
E ++ +R + V TL+ + L+ Y + V A ++ G G++S+ I+
Sbjct: 55 WEEYNRTNTRVTHYLPNV--TLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTIS 108
>pdb|1X4X|A Chain A, Solution Structure Of The 6th Fibronectin Type Iii
Domain From Human Fibronectin Type Iii Domain
Containing Protein 3
Length = 106
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 68 IVGLQPDTKYYVKVMAYNNAGEGPESE 94
I GL P T YY +V A + G GP SE
Sbjct: 65 IKGLSPATTYYCRVQALSVVGAGPFSE 91
>pdb|1TTF|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
pdb|1TTG|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
Length = 94
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 102
+++ A I GL+P Y + V A G+ P S + + YR
Sbjct: 53 SKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 93
>pdb|1ZLG|A Chain A, Solution Structure Of The Extracellular Matrix Protein
Anosmin-1
Length = 680
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 68 IVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH 113
+ L+P T Y ++V GEGP + +T+R P+ PPS+ H
Sbjct: 598 VPNLRPSTLYRLEVQVLTPGGEGPAT----IKTFR-TPELPPSSAH 638
>pdb|1FNA|A Chain A, Crystal Structure Of The Tenth Type Iii Cell Adhesion
Module Of Human Fibronectin
Length = 91
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 102
+++ A I GL+P Y + V A G+ P S + + YR
Sbjct: 48 SKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 88
>pdb|1UJT|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 120
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 117 INPTTVHVTWRYVSPSFEEEP--IIGYKVRVWEVD--QDMSRANDTIIPVGNTLDADIVD 172
+ PTTV VTW + + +P I GY+V + Q S + V A +V+
Sbjct: 27 LTPTTVQVTW-----TVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVN 81
Query: 173 LSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSG 212
L G Y ++V + N G M S + T + EE SG
Sbjct: 82 LKKGVTYEIKVRPYFNEFQG-MDSESKTVRTTEESGPSSG 120
>pdb|2DKM|A Chain A, Solution Structures Of The Fn3 Domain Of Human Collagen
Alpha-1(Xx) Chain
Length = 104
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWR 127
P PP A+ + + P TVH+TW+
Sbjct: 7 GPLPPPRALTLAAVTPRTVHLTWQ 30
>pdb|2HAZ|A Chain A, Crystal Structure Of The First Fibronectin Domain Of
Human Ncam1
Length = 105
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 68 IVGLQPDTKYYVKVMAYNNAGEG 90
IVGL+P+T Y V++ A N G G
Sbjct: 70 IVGLKPETTYAVRLAALNGKGLG 92
>pdb|1X5J|A Chain A, The Solution Structure Of The Fifth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 113
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHR--IKYWKEDNPEETAVYYLS 59
P + P GV + + I +TW L + ++ R WK + P T +
Sbjct: 8 PMMPPVGVQASILSHDTIRITWADNSLPKHQ---KITDSRYYTVRWKTNIPANTKYKNAN 64
Query: 60 RTTRNWALIVGLQPDTKYYVKVM 82
TT ++ L+ GL+P+T Y VM
Sbjct: 65 ATTLSY-LVTGLKPNTLYEFSVM 86
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 68 IVGLQPDTKYYVKVMAYNNAGEG 90
IVGL+P+T Y V++ A N G G
Sbjct: 177 IVGLKPETTYAVRLAALNGKGLG 199
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPII--GYKVRVWEVDQDMS--RANDTIIPVG 163
PP + +K + T+V +TW + P++ G K++ + V++ S +A T+
Sbjct: 8 PPQDLKVKEVTKTSVTLTW--------DPPLLDGGSKIKNYIVEKRESTRKAYSTVATNC 59
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 205
+ + L G Y+ RVLA + G G + A + + E
Sbjct: 60 HKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE 101
>pdb|2CSP|A Chain A, Solution Structure Of The Fniii Domain Of Human
Rim-Binding Protein 2
Length = 130
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 100 TYRKAPQKPPSAVHIK-GINPTTVHVTWR--YVSPSFEEEPIIGYKVRVWEVDQDMSRAN 156
T P PP V ++ G+ P T+ V+WR ++P+ G V + V R
Sbjct: 12 TLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSN---GANVTGYGVYAKGQRVA 68
Query: 157 DTIIPVGNTLDADIVDL 173
+ I P ++ ++V L
Sbjct: 69 EVIFPTADSTAVELVRL 85
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 161 PVGNTLDADIVDLSPGKRYHMRVLAFS 187
P T D ++ ++PGKRY R+++ S
Sbjct: 178 PSTTTADLSVISVTPGKRYRFRLVSLS 204
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 59 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 110
S + ++ L+P+T Y ++V A N G+G S+ + +T PPS
Sbjct: 247 SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS 298
>pdb|3NG0|A Chain A, Crystal Structure Of Glutamine Synthetase From
Synechocystis Sp. Pcc 6803
Length = 473
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 27/166 (16%)
Query: 21 VTWNPIELIRENIRGRLIGHRIKYWKEDNP----------EETAVYYLSRTTRNW-ALIV 69
VT+ P + +N G + + WK+ P + ++Y+ ++ AL+
Sbjct: 256 VTFMPKPIFNDNGSGMHVHQSL--WKDGQPLFAGDKYAGFSQMGLWYIGGILKHAPALLA 313
Query: 70 GLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYV 129
P T Y +++ P E + Y + + + + G NP + +R
Sbjct: 314 FTNPTTNSYKRLV--------PGFEAPVNLAYSQGNRSASVRIPLSGGNPKAKRLEFR-- 363
Query: 130 SPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSP 175
P P + + + + + I P G LD DI DLSP
Sbjct: 364 CPDATSNPYLAFAAMLC---AGIDGIKNQIDP-GEPLDVDIYDLSP 405
>pdb|1UCT|A Chain A, Crystal Structure Of The Extracellular Fragment Of Fc
Alpha Receptor I (Cd89)
Length = 218
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 28 LIRENIRGRLIGHRIKYWKEDNPE 51
+I +N R IG R+K+W E +PE
Sbjct: 42 MIIKNSTYREIGRRLKFWNETDPE 65
>pdb|3R5A|A Chain A, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|B Chain B, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|C Chain C, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|D Chain D, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|E Chain E, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|F Chain F, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5B|A Chain A, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|B Chain B, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|C Chain C, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|D Chain D, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|E Chain E, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|F Chain F, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5C|A Chain A, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With Coa
And Succinate
pdb|3R5C|B Chain B, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With Coa
And Succinate
pdb|3R5C|C Chain C, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With Coa
And Succinate
pdb|3R5D|A Chain A, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|B Chain B, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|C Chain C, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|D Chain D, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|E Chain E, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|F Chain F, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
Length = 347
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 66 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVT 125
AL+ L K V + +A +E YL+ P AV++ GI P +V
Sbjct: 80 ALLSRLAESQKPLVATLLAEDAAPSSTAEAYLKLHLLSHRLVKPHAVNLSGIFPLLPNVA 139
Query: 126 WRYVSPSFEEEP--------IIGYKVRVWEVDQDMSRANDTIIPVG 163
W + E + G + V+ VD+ + D ++P G
Sbjct: 140 WTNIGAVDLAELAELQLEARLKGKLLEVFSVDK-FPKMTDYVVPAG 184
>pdb|2EDB|A Chain A, Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 116
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 16 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 75
+ I ++W P +RG +IG+ + +P V S+ + + I L+ +
Sbjct: 30 TNCIIMSWTPPLNPNIVVRGYIIGYGVG-----SPYAETVRVDSK--QRYYSIERLESSS 82
Query: 76 KYYVKVMAYNNAGEG-PESERYLERTYRKAPQK 107
Y + + A+NNAGEG P E R+ P
Sbjct: 83 HYVISLKAFNNAGEGVPLYESATTRSITSGPSS 115
>pdb|1OVZ|A Chain A, Crystal Structure Of Human Fcari
pdb|1OVZ|B Chain B, Crystal Structure Of Human Fcari
pdb|1OW0|C Chain C, Crystal Structure Of Human Fcari Bound To Iga1-fc
pdb|1OW0|D Chain D, Crystal Structure Of Human Fcari Bound To Iga1-fc
Length = 207
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 28 LIRENIRGRLIGHRIKYWKEDNPE 51
+I +N R IG R+K+W E +PE
Sbjct: 40 MIIKNSTYREIGRRLKFWNETDPE 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,517,924
Number of Sequences: 62578
Number of extensions: 336437
Number of successful extensions: 923
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 120
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)