RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14887
(238 letters)
>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain.
Length = 84
Score = 64.4 bits (157), Expect = 1e-13
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
P+ + + + T++ ++W SP PI GY+V V+ + +P G T
Sbjct: 2 APTNLTVTDVTSTSLTLSW---SPPPGNGPITGYEVEYRPVN-GGEEWKEITVP-GTTTS 56
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMS 195
+ L PG Y +RV A + G+G S
Sbjct: 57 YTLTGLKPGTEYEVRVQAVNGAGEGPPS 84
Score = 60.5 bits (147), Expect = 2e-12
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP + ST++ ++W+P G + G+ ++Y + EE + TT +
Sbjct: 2 APTNLTVTDVTSTSLTLSWSPPPG-----NGPITGYEVEYRPVNGGEEWKEITVPGTTTS 56
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPES 93
+ GL+P T+Y V+V A N AGEGP S
Sbjct: 57 -YTLTGLKPGTEYEVRVQAVNGAGEGPPS 84
>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein
fibronectin. Its tenth fibronectin type III repeat
contains an RGD cell recognition sequence in a flexible
loop between 2 strands. Approximately 2% of all animal
proteins contain the FN3 repeat; including extracellular
and intracellular proteins, membrane spanning cytokine
receptors, growth hormone receptors, tyrosine
phosphatase receptors, and adhesion molecules. FN3-like
domains are also found in bacterial glycosyl hydrolases.
Length = 93
Score = 59.8 bits (145), Expect = 6e-12
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
PP+ + + + T+V ++W P + PI GY V E + + G+
Sbjct: 3 PPTNLRVTDVTSTSVTLSWT--PPEDDGGPITGYVVEYREKGSGDWKEVEV--TPGSETS 58
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
+ L PG Y RV A + GG+ S
Sbjct: 59 YTLTGLKPGTEYEFRVRAVNGGGESPPSES 88
Score = 54.4 bits (131), Expect = 5e-10
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + ST++ ++W P E I G ++ ++E + ++ +
Sbjct: 3 PPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVV-----EYREKGSGDWKEVEVTPGSET 57
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 100
+ GL+P T+Y +V A N GE P SE T
Sbjct: 58 SYTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain. One of three types of
internal repeat within the plasma protein, fibronectin.
The tenth fibronectin type III repeat contains a RGD
cell recognition sequence in a flexible loop between 2
strands. Type III modules are present in both
extracellular and intracellular proteins.
Length = 83
Score = 54.2 bits (130), Expect = 5e-10
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
PPS + + + T+V ++W I+GY+V E + N T ++
Sbjct: 3 PPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVT----PSSTS 58
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDG 192
+ L PG Y RV A + G+G
Sbjct: 59 YTLTGLKPGTEYEFRVRAVNGAGEG 83
Score = 52.2 bits (125), Expect = 3e-09
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + ST++ ++W P + I G ++G+R++Y +E + + +
Sbjct: 3 PPSNLRVTDVTSTSVTLSWEPPP--DDGITGYIVGYRVEYREEGSEWKEVN---VTPSST 57
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEG 90
+ GL+P T+Y +V A N AGEG
Sbjct: 58 SYTLTGLKPGTEYEFRVRAVNGAGEG 83
>gnl|CDD|183167 PRK11508, PRK11508, sulfur transfer protein TusE; Provisional.
Length = 109
Score = 29.2 bits (65), Expect = 0.69
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 60 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI 117
R R++ L P + VK MA N GE + RYL R + K P K A I G+
Sbjct: 48 RFVRDFYLEFNTSPAIRMLVKAMA-NKFGEEKGNSRYLYRLFPKGPAK--QATKIAGL 102
>gnl|CDD|220166 pfam09294, Interfer-bind, Interferon-alpha/beta receptor,
fibronectin type III. Members of this family adopt a
secondary structure consisting of seven beta-strands
arranged in an immunoglobulin-like beta-sandwich, in a
Greek-key topology. They are required for binding to
interferon-alpha.
Length = 106
Score = 28.1 bits (63), Expect = 1.4
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 41 RIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYN 85
R+ YWK + E +T ++ ++ L+P T Y V V A++
Sbjct: 47 RVSYWKNSSNGEKKET---ESTNSFVVLSDLEPGTTYCVSVQAFS 88
>gnl|CDD|234411 TIGR03950, sidero_Fe_reduc, siderophore ferric iron reductase,
AHA_1954 family. Members of this protein family are
2Fe-2S cluster binding proteins, found regularly in the
context of siderophore transporters. Members are
distantly related to FhuF from E. coli, a ferric iron
reductase linked to removal of iron from
hydroxamate-type siderophores (PMID:14756576) [Energy
metabolism, Electron transport, Transport and binding
proteins, Cations and iron carrying compounds].
Length = 223
Score = 28.8 bits (65), Expect = 1.9
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 44 YWKEDNPEETAVYYLSRTTRNWALIVGLQP 73
Y ++ +PE + Y+L+RT W L+ QP
Sbjct: 40 YLRQAHPEAGSAYWLTRT---WTLLC-WQP 65
>gnl|CDD|220618 pfam10179, DUF2369, Uncharacterized conserved protein (DUF2369).
This is a proline-rich region of a group of proteins
found from plants to fungi. The function is not known.
Length = 300
Score = 27.1 bits (60), Expect = 9.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 63 RNWALIVGLQPDTKYYVKVMAYNNA 87
RN L+ GL+PDT YY+ V A +
Sbjct: 14 RNNQLVSGLKPDTTYYLDVFAVHQK 38
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.403
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,454,886
Number of extensions: 1182112
Number of successful extensions: 938
Number of sequences better than 10.0: 1
Number of HSP's gapped: 929
Number of HSP's successfully gapped: 22
Length of query: 238
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 144
Effective length of database: 6,768,326
Effective search space: 974638944
Effective search space used: 974638944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)