RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14887
(238 letters)
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 161 bits (409), Expect = 5e-50
Identities = 49/207 (23%), Positives = 77/207 (37%), Gaps = 7/207 (3%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
+P + P GV + + I +TW L + + + WK + P T +
Sbjct: 3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTV-RWKTNIPANTKYKNAN- 60
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKG--IN 118
T L+ GL+P+T Y VM S T+ P PP V +
Sbjct: 61 ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGK 120
Query: 119 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKR 178
P T+ V W+ PS I GY + VGN L I +L+
Sbjct: 121 PKTIIVNWQ--PPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTP 178
Query: 179 YHMRVLAFSNGGDGRMSSPAITFQMGE 205
Y+ ++ A ++ G G MS + F+ +
Sbjct: 179 YYFKIQARNSKGMGPMSEA-VQFRTPK 204
Score = 76.0 bits (187), Expect = 4e-17
Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 2 PQVAPQG--VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 59
P P+ V S+ I V W P G++ G+ I Y + N E
Sbjct: 105 PTSPPKDVTVVSKEGKPKTIIVNWQPPS----EANGKITGYIIYYSTDVNAEIHDWVIEP 160
Query: 60 RT-TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH 113
R I L DT YY K+ A N+ G GP SE RT P+ H
Sbjct: 161 VVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT----PKAHHHHHH 211
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 159 bits (404), Expect = 7e-49
Identities = 48/205 (23%), Positives = 77/205 (37%), Gaps = 15/205 (7%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
M APQ ++ S I+ W P G+ +G+R+KYW + + E A
Sbjct: 4 MDLGAPQNPNAKAAGSRKIHFNWLPP-------SGKPMGYRVKYWIQGDSESEAHLL--D 54
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPT 120
+ + L P Y +KV AY GEGP S RT+++ P P + ++ T
Sbjct: 55 SKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPS-EPGRLAFNVVSST 113
Query: 121 TVHVTWRYVSPSFEEEPIIGYKVRVWEVDQD---MSRANDTIIPVGNTLDADIVDLSPGK 177
++W P+ I Y+V V+ D + ++ I +L +
Sbjct: 114 VTQLSWA--EPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQ 171
Query: 178 RYHMRVLAFSNGGDGRMSSPAITFQ 202
Y V A + G G I
Sbjct: 172 PYRYTVKARNGAGWGPEREAIINLA 196
Score = 82.1 bits (203), Expect = 3e-19
Identities = 24/133 (18%), Positives = 41/133 (30%), Gaps = 9/133 (6%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + +ST ++W G + + + Y ++ N
Sbjct: 101 EPGRLAFNVVSSTVTQLSWAEPA----ETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN 156
Query: 65 ----WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRK-APQKPPSAVHIKGINP 119
LI L+ Y V A N AG GPE E + + P P I ++
Sbjct: 157 PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDA 216
Query: 120 TTVHVTWRYVSPS 132
+ ++ S
Sbjct: 217 QSGEDYDSFLMYS 229
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 127 bits (321), Expect = 3e-34
Identities = 29/202 (14%), Positives = 57/202 (28%), Gaps = 13/202 (6%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
P + V W RE+++ ++ + K +
Sbjct: 398 FQATHPVMDLKAFPKDNMLWVEWTTP---RESVKKYILEWCVLSDKAPCITD--WQQEDG 452
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPT 120
T L L Y + V G G + P K P+ V K +
Sbjct: 453 TVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK-AYLKQAPPSKGPT-VRTKKVGKN 510
Query: 121 TVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYH 180
+ W + + I Y + + + + + + + L+ Y
Sbjct: 511 EAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN----ETAVNVDSSHTEYTLSSLTSDTLYM 566
Query: 181 MRVLAFSNGGDGRMSSPAITFQ 202
+R+ A+++ G P TF
Sbjct: 567 VRMAAYTDEGGK--DGPEFTFT 586
Score = 83.5 bits (206), Expect = 1e-18
Identities = 30/207 (14%), Positives = 55/207 (26%), Gaps = 13/207 (6%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P+ + + W+ +K + T +
Sbjct: 105 KPKNLSCIVNEGKKMRCEWDG-----GRETHLETNFTLKSEWATHKFADCKAK-RDTPTS 158
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN--PTTV 122
+ V V A N G+ S+ K PP + + + +
Sbjct: 159 CTVDYSTVYFVNIEVWVEAENALGKV-TSDHINFDPVYKVKPNPPHNLSVINSEELSSIL 217
Query: 123 HVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMR 182
+TW +PS + I+ Y ++ D + DL P Y R
Sbjct: 218 KLTWT--NPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR 275
Query: 183 VLAFSNGGDGRMS--SPAITFQMGEEK 207
+ G G S S + E++
Sbjct: 276 IRCMKEDGKGYWSDWSEEASGITYEDR 302
Score = 80.0 bits (197), Expect = 2e-17
Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 20/218 (9%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY-YLSRTTRNWALIVGLQP 73
S+ + +TW ++ + I+Y +D + + + +TR+ + L+P
Sbjct: 213 LSSILKLTWTN----PSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKP 268
Query: 74 DTKYYVKVMAYNNAGEGPESE---RYLERTYRKAPQKPPSAVHIKGI----NPTTVHVTW 126
T+Y ++ G+G S+ TY P K PS + TV + W
Sbjct: 269 FTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVW 328
Query: 127 RYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAF 186
+ + P I+ Y+V + + V T + RY +
Sbjct: 329 KTLPPFEANGKILDYEVTLTRWKSHL-----QNYTVNAT---KLTVNLTNDRYLATLTVR 380
Query: 187 SNGGDGRMSSPAITFQMGEEKEFKSGSPALYSASTTLL 224
+ G + I + A + +
Sbjct: 381 NLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWV 418
Score = 46.5 bits (110), Expect = 3e-06
Identities = 14/166 (8%), Positives = 38/166 (22%), Gaps = 12/166 (7%)
Query: 41 RIKYWKEDNP-EETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLER 99
I + + ++RT + + + ++ + + +
Sbjct: 41 YIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISG 100
Query: 100 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 159
P + P + + W E + ++ +
Sbjct: 101 ----LPPEKPKNLSCIVNEGKKMRCEW---DGGRETHLETNFTLKSEWATHKFADCKAK- 152
Query: 160 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 205
T + V A + G+++S I F
Sbjct: 153 -RDTPTSCTVDYSTVYFVNIEVWVEAEN--ALGKVTSDHINFDPVY 195
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 126 bits (318), Expect = 1e-33
Identities = 40/207 (19%), Positives = 68/207 (32%), Gaps = 13/207 (6%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEET---AVYYL 58
P P+ + S I + W P R + Y + +E V +
Sbjct: 359 PMRGPRKLEVVEVKSRQITIRWEPFG--YNVTRCHSYNLTVHYCYQVGGQEQVREEVSWD 416
Query: 59 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 118
+ + I L P T VK++ N G S+ + +T P P+
Sbjct: 417 TENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDLPGAVPTESIQGSTF 475
Query: 119 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ-----DMSRANDTIIPVGNTLDADIVDL 173
+ + WR P+ I Y++ V D+S + + +GN L
Sbjct: 476 EEKIFLQWR--EPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGL 533
Query: 174 SPGKRYHMRVLAFSNGGDGRMSSPAIT 200
PG Y + A + G G ++ T
Sbjct: 534 YPGTTYSFTIRASTAKGFGPPATNQFT 560
Score = 120 bits (302), Expect = 2e-31
Identities = 41/267 (15%), Positives = 58/267 (21%), Gaps = 51/267 (19%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
+P P I + W G + + I Y + +
Sbjct: 461 LPGAVPTESIQGSTFEEKIFLQWREPT----QTYGVITLYEITYKAVSSFDPEIDLSNQS 516
Query: 61 ------TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHI 114
L GL P T Y + A G GP + T AP P +
Sbjct: 517 GRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQF-TTKISAPSMPAYELET 575
Query: 115 KGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI---IPVGNTLDAD-- 169
+N T VT P+ Y++ V E ++ I PV
Sbjct: 576 P-LNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASL 634
Query: 170 ----------------------------------IVDLSPGKRYHMRVLAFSNGGDGRMS 195
L P K Y + A S
Sbjct: 635 LNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKI 694
Query: 196 SPAITFQMGEEKEFKSGSPALYSASTT 222
G P + T
Sbjct: 695 DCVQVATKGAATPKPVPEPEKQTDHTV 721
Score = 102 bits (254), Expect = 5e-25
Identities = 30/209 (14%), Positives = 59/209 (28%), Gaps = 13/209 (6%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P V +T + + N N G ++ ++Y
Sbjct: 261 PPVPIAPPQLASVGATYLWIQLNANS---INGDGPIVAREVEYCTASGSWNDRQ----PV 313
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNA--GEGPESERYLERTYRKAPQKPPSAVHIKGINP 119
I L PDT+Y + V+ G G RT P + P + + +
Sbjct: 314 DSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKS 373
Query: 120 TTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTII--PVGNTLDADIVDLSPGK 177
+ + W + V + + + + I +LSP
Sbjct: 374 RQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYT 433
Query: 178 RYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
++++ + G S + Q E+
Sbjct: 434 NVSVKLILMNPEGRK--ESQELIVQTDED 460
Score = 69.4 bits (169), Expect = 7e-14
Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 13/174 (7%)
Query: 38 IGHRIKYWKEDNPEETAVYYLSRTTRN---WALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
G R+ D + ++R +V + M G G +
Sbjct: 194 AGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNY 253
Query: 95 RYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSR 154
K P P + + + T + + S + + PI+ +V +
Sbjct: 254 AE---LVVKEPPVPIAPPQLASVGATYLWIQLNANSIN-GDGPIVAREVEYCTASGSWND 309
Query: 155 ANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS-SPAITFQMGEEK 207
++ I L P Y + VL G G S PA+ +
Sbjct: 310 RQP-----VDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCAD 358
Score = 47.5 bits (112), Expect = 2e-06
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 43 KYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 102
++ + T N L P Y + A + A + + T
Sbjct: 644 EFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKG 703
Query: 103 KAPQKPPSAVHIKGINPTTVHVTWRY 128
A KP + TV T +
Sbjct: 704 AATPKPVPE--PEKQTDHTVKGTKHH 727
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 112 bits (281), Expect = 1e-31
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 3/119 (2%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKED-NPEETAVYYLS 59
P PQ V ST + V+W P ++ G + + + Y D V
Sbjct: 17 TPSAPPQKVMCVSMGSTTVRVSWVPPP--ADSRNGVITQYSVAYEAVDGEDRGRHVVDGI 74
Query: 60 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 118
+ +VGL+ T+Y V V A+ + G GPES L RT P PP V +
Sbjct: 75 SREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS 133
Score = 94.4 bits (235), Expect = 9e-25
Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 1/119 (0%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 147
G S RT + P PP V + TTV V+W I Y V
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 148 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
VD + + D+V L Y + V A ++ G G SSP + + E+
Sbjct: 61 VDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSP-VLVRTDED 118
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 111 bits (279), Expect = 2e-31
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
+P APQ + NS +I + W P G++ G++I+Y K + L
Sbjct: 17 VPSAAPQNLSLEVRNSKSIMIHWQPPA--PATQNGQITGYKIRYRKASRKSDVT-ETLVS 73
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPP 109
T+ LI GL T+Y +V A G GP ++ T+ +
Sbjct: 74 GTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 122
Score = 89.0 bits (221), Expect = 1e-22
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 147
G S RT P P + ++ N ++ + W+ +P+ + I GYK+R +
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 148 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
+ + G L I L G Y+ RV A + G G + ++ + E
Sbjct: 61 ASRKSDVTETLV--SGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDW-LSAETFES 116
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 112 bits (283), Expect = 3e-30
Identities = 30/200 (15%), Positives = 58/200 (29%), Gaps = 13/200 (6%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P + V W RE+++ ++ + K + T
Sbjct: 100 QATHPVMDLKAFPKDNMLWVEWTTP---RESVKKYILEWCVLSDKAPCITDWQQ--EDGT 154
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 121
L L Y + V G G + P K P+ V K +
Sbjct: 155 VHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK-AYLKQAPPSKGPT-VRTKKVGKNE 212
Query: 122 VHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHM 181
+ W + + I Y + + + + N + + + L+ Y +
Sbjct: 213 AVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVD----SSHTEYTLSSLTSDTLYMV 268
Query: 182 RVLAFSNGGDGRMSSPAITF 201
R+ A+++ G P TF
Sbjct: 269 RMAAYTDEGGK--DGPEFTF 286
Score = 86.4 bits (214), Expect = 2e-20
Identities = 25/207 (12%), Positives = 55/207 (26%), Gaps = 19/207 (9%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
P + S + + W + N G+++ + + + + +
Sbjct: 7 APSFWYKIDPSHTQGYRTVQLVWKTLPPFEAN--GKILDYEVTLTRWKSHLQN------- 57
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPT 120
T N + + +Y + N G+ + + P +
Sbjct: 58 YTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTI-PACDFQATHPVMDLKAFP-KDN 115
Query: 121 TVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND-TIIPVGNTLDADIVDLSPGKRY 179
+ V W +P E + Y + + D +L+ K Y
Sbjct: 116 MLWVEWT--TPR---ESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCY 170
Query: 180 HMRVLAFSNGGDGRMSSPAITFQMGEE 206
+ V G G S I + +
Sbjct: 171 LITVTPVYADGPGSPES--IKAYLKQA 195
Score = 40.6 bits (95), Expect = 2e-04
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 104 APQKPPSAVHI----KGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 159
P K PS + TV + W+ + P I+ Y+V + +
Sbjct: 3 RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNA 62
Query: 160 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
+ L RY + + G + I
Sbjct: 63 TKLTVNL--------TNDRYLATLTVRNLVGKSDAAVLTIP 95
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 107 bits (270), Expect = 3e-30
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
P AP V + +S+ I+V W + + ++I+YW + EE A
Sbjct: 17 APSEAPTEVGVKVLSSSEISVHWEHVL------EKIVESYQIRYWAAHDKEEAANRVQVT 70
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ A + L PDT+Y+++V A N+AG GP S+ T + + P S
Sbjct: 71 SQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASG--PSSG 119
Score = 83.6 bits (207), Expect = 8e-21
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 147
G S + + + AP + P+ V +K ++ + + V W +V + + Y++R W
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE----KIVESYQIRYWA 56
Query: 148 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
D A + + A + +L P +Y + V A ++ G G S
Sbjct: 57 AH-DKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDM 105
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 107 bits (270), Expect = 4e-30
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
+P VAP V NST V W+P+ ++IRG L G+RI YWK + + ++ +
Sbjct: 13 LPMVAPGNVRVNVVNSTLAEVHWDPVP--LKSIRGHLQGYRIYYWKTQSSSKRNRRHIEK 70
Query: 61 ------TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
++ ++ GL+P + Y + V N GEGP S + T PS+
Sbjct: 71 KILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNT---PEGSGPSS 124
Score = 80.1 bits (198), Expect = 2e-19
Identities = 24/120 (20%), Positives = 36/120 (30%), Gaps = 6/120 (5%)
Query: 93 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDM 152
S + P P V + +N T V W V + GY++ W+
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 153 SRANDTIIPV-----GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 207
R I G+ + L P Y + V + G+G S F E
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPD-RVFNTPEGS 120
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 104 bits (262), Expect = 6e-29
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
+P PQ V NS +I V+W P G + G++I++ K E
Sbjct: 27 VPSAPPQNVSLEVVNSRSIKVSWLPPP--SGTQNGFITGYKIRHRKTTRRGEMETL---E 81
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 100
W L GL+ ++Y +V A G GP S Y T
Sbjct: 82 PNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAET 121
Score = 101 bits (253), Expect = 1e-27
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 5/127 (3%)
Query: 79 VKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPI 138
+ N G G ++ T P PP V ++ +N ++ V+W + I
Sbjct: 2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61
Query: 139 IGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 198
GYK+R + + + N L L G +Y +V A + G G S+
Sbjct: 62 TGYKIRHRKTTRR----GEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW- 116
Query: 199 ITFQMGE 205
T + E
Sbjct: 117 YTAETPE 123
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 109 bits (275), Expect = 2e-28
Identities = 41/196 (20%), Positives = 72/196 (36%), Gaps = 20/196 (10%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+P G+ + + V W R + G+RI++ E + +RN
Sbjct: 188 SPTGIDFSDITANSFTVHWIAP-------RATITGYRIRHHPEHFSGRPREDRVP-HSRN 239
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ L P T+Y V ++A N E P + P + + PT++ +
Sbjct: 240 SITLTNLTPGTEYVVSIVALNGREESPLLI-----GQQSTVSDVPRDLEVVAATPTSLLI 294
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 184
+W + + Y++ E + T+ G+ A I L PG Y + V
Sbjct: 295 SWDAPAV-----TVRYYRITYGETGGNSPVQEFTV--PGSKSTATISGLKPGVDYTITVY 347
Query: 185 AFSNGGDGRMSSPAIT 200
A + GD SS I+
Sbjct: 348 AVTGRGDSPASSKPIS 363
Score = 100 bits (250), Expect = 5e-25
Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 19/192 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + + VTW P L ++Y N E+ A +S +
Sbjct: 97 PPTDLRFTNIGPDTMRVTWAPPP------SIDLTNFLVRYSPVKNEEDVAELSISPSDNA 150
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
++ L P T+Y V V + E R +K P+ + I + V
Sbjct: 151 -VVLTNLLPGTEYVVSVSSVYEQHESTPL-----RGRQKTGLDSPTGIDFSDITANSFTV 204
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 184
W +P I GY++R D + + + +L+PG Y + ++
Sbjct: 205 HWI--APR---ATITGYRIRHHPEHFSGRPREDRV--PHSRNSITLTNLTPGTEYVVSIV 257
Query: 185 AFSNGGDGRMSS 196
A + + +
Sbjct: 258 ALNGREESPLLI 269
Score = 90.3 bits (224), Expect = 2e-21
Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 17/178 (9%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
++ + V+W + G+RI + + ++ + ++ L P
Sbjct: 15 DTGVLTVSWERST------TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPG 68
Query: 75 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE 134
+Y V V + E + P PP+ + I P T+ VTW
Sbjct: 69 LEYNVSVYTVKDDKESVPIS---DTIIPAVP--PPTDLRFTNIGPDTMRVTWAPPPSI-- 121
Query: 135 EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 192
+ + VR V + A +I + + +L PG Y + V + +
Sbjct: 122 --DLTNFLVRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVSSVYEQHES 175
Score = 59.1 bits (143), Expect = 2e-10
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P+ + T++ ++W+ + +RI Y + + + +++
Sbjct: 278 VPRDLEVVAATPTSLLISWDAPA-------VTVRYYRITYGETGGNSPVQEFTVP-GSKS 329
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 102
A I GL+P Y + V A G+ P S + + YR
Sbjct: 330 TATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 367
Score = 49.1 bits (117), Expect = 4e-07
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 105 PQKPPSAVHIKGI-NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 163
P PP+ +H++ + + V+W I GY++ + + + ++
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERS----TTPDITGYRITTTPTNGQQGNSLEEVVH-A 55
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 196
+ +LSPG Y++ V + + S
Sbjct: 56 DQSSCTFDNLSPGLEYNVSVYTVKDDKESVPIS 88
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 102 bits (256), Expect = 5e-28
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 9/114 (7%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKED---NPEETAVYY 57
P P V + S +I VTW + +E G + G++I Y + N + + V
Sbjct: 14 APDGPPMDVTLQPVTSQSIQVTWKAPK--KELQNGVIRGYQIGYRENSPGSNGQYSIVEM 71
Query: 58 LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ + L+ +Y V V A+N AG GP S T + PS+
Sbjct: 72 KATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT----LESGPSS 121
Score = 77.0 bits (190), Expect = 2e-18
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 3/117 (2%)
Query: 92 ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ- 150
S T AP PP V ++ + ++ VTW+ + I GY++ E
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 151 -DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
+ + + G++ + +L +Y + V AF+ G G SS I E
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSE-INATTLES 117
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 103 bits (259), Expect = 2e-27
Identities = 36/196 (18%), Positives = 75/196 (38%), Gaps = 10/196 (5%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
+ + W + + R ++ + I++ P Y + + +V + P
Sbjct: 17 QADKAEIHWEQ----QGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPW 72
Query: 75 TKYYVKVMAYNNAGEGP---ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSP 131
Y +V+A+N G P S+ T P K P V +G P + ++W +
Sbjct: 73 ANYTFRVIAFNKIGASPPSAHSDSC--TTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPE 130
Query: 132 SFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGD 191
P Y V W+ D + + I + I D +Y ++V+A ++ G+
Sbjct: 131 IEHNAPNFHYYVS-WKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGE 189
Query: 192 GRMSSPAITFQMGEEK 207
+++ + GE++
Sbjct: 190 SNVAAEEVVGYSGEDR 205
Score = 71.7 bits (176), Expect = 2e-15
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P P V +G + ++W P+ + + + ++ +
Sbjct: 104 PFKNPDNVVGQGTEPNNLVISWTPMP--EIEHNAPNFHYYVSWKRDIPAAAWENNNIFDW 161
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
+N +I KY +KV+A N+ GE +
Sbjct: 162 RQNNIVIADQPTFVKYLIKVVAINDRGESNVAA 194
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 108 bits (269), Expect = 4e-27
Identities = 40/212 (18%), Positives = 67/212 (31%), Gaps = 16/212 (7%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
+ + + F + F NV + P R N EE +
Sbjct: 692 ILKELEESSFRKTFEDYLHNVVFVPRP-------SRKRRSLGDVGNAGNNEEHRPFEKV- 743
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGP---ESERYLERT-YRKAPQKPPSAVHIKG 116
+ +I GL+ T Y +++ A N + RT V +
Sbjct: 744 VNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEI 803
Query: 117 INPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG 176
VH+ W+ P I+ Y+V + DT + LSPG
Sbjct: 804 FENNVVHLMWQ--EPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG 861
Query: 177 KRYHMRVLAFSNGGDGRMSSPAITFQMGEEKE 208
Y +R+ A S G+G + P F + + +
Sbjct: 862 -NYSVRIRATSLAGNGSWTEP-TYFYVTDYLD 891
Score = 70.7 bits (172), Expect = 3e-14
Identities = 26/196 (13%), Positives = 51/196 (26%), Gaps = 15/196 (7%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P S +S+ I + W P NI L+ +W+ + +
Sbjct: 597 VPLDPISVSNSSSQIILKWKPPSDPNGNITHYLV-----FWERQAEDSELFE------LD 645
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ L P + + ++ P+ +K + ++
Sbjct: 646 YCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDS--QILKELEESSFRK 703
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTII--PVGNTLDADIVDLSPGKRYHMR 182
T+ + P K R + + V N I L Y +
Sbjct: 704 TFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIE 763
Query: 183 VLAFSNGGDGRMSSPA 198
+ A + S A
Sbjct: 764 LQACNQDTPEERCSVA 779
Score = 68.8 bits (167), Expect = 1e-13
Identities = 30/210 (14%), Positives = 55/210 (26%), Gaps = 41/210 (19%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYY----------------- 57
+ I + W P + R L+G + Y + T
Sbjct: 481 SFDKILLRWEPYW--PPDFRD-LLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPP 537
Query: 58 -----LSRTTRNWALIVGLQPDTKYYVKVMAYNNAGE-----GPESERYLERTYRKAPQK 107
L+ GL+P T+Y + V + G +S+ +T P
Sbjct: 538 LRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPS- 596
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
P + + + + W+ PS I Y V +D G L
Sbjct: 597 VPLDPISVSNSSSQIILKWK--PPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKL- 653
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
P + + + + +
Sbjct: 654 -------PSRTWSPPFESEDSQKHNQSEYE 676
Score = 44.9 bits (105), Expect = 1e-05
Identities = 19/181 (10%), Positives = 45/181 (24%), Gaps = 26/181 (14%)
Query: 71 LQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVS 130
L + ++ ++ + + + + + + + W
Sbjct: 434 LCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYW 493
Query: 131 PSFEEEPIIGYKVR---------------------VWEVDQDMSRANDTIIPVGNTLDAD 169
P + ++G+ + W V N
Sbjct: 494 PP-DFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWL 552
Query: 170 IVDLSPGKRYHMRVLAFSNGGDGRMS----SPAITFQMGEEKEFKSGSPALYSASTTLLL 225
+ L P +Y + V D R + S I Q P S S++ ++
Sbjct: 553 MRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQII 612
Query: 226 V 226
+
Sbjct: 613 L 613
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 105 bits (264), Expect = 6e-27
Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 18/188 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+ ++I + W P+ +IG+RI ++ +
Sbjct: 98 QLTDLSFVDITDSSIGLRWTPLN------SSTIIGYRITVVAAGEGIPIFEDFVDSSVGY 151
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ GL+P Y + V+ N GE + ++ PP+ + I P T+ V
Sbjct: 152 -YTVTGLEPGIDYDISVITLINGGESAPTT-----LTQQTAVPPPTDLRFTNIGPDTMRV 205
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 184
TW P + + VR V + A +I + + +L PG Y + V
Sbjct: 206 TWA--PP--PSIDLTNFLVRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVS 259
Query: 185 AFSNGGDG 192
+ +
Sbjct: 260 SVYEQHES 267
Score = 98.3 bits (245), Expect = 3e-24
Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 19/199 (9%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P + + VTW P L ++Y N E+ A +S
Sbjct: 186 AVPPPTDLRFTNIGPDTMRVTWAPPP------SIDLTNFLVRYSPVKNEEDVAELSIS-P 238
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 121
+ N ++ L P T+Y V V + E +K P+ + I +
Sbjct: 239 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-----GRQKTGLDSPTGIDFSDITANS 293
Query: 122 VHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHM 181
V W I GY++R D + + + +L+PG Y +
Sbjct: 294 FTVHWIAPRA-----TITGYRIRHHPEHFSGRPREDRV--PHSRNSITLTNLTPGTEYVV 346
Query: 182 RVLAFSNGGDGRMSSPAIT 200
++A + + + +
Sbjct: 347 SIVALNGREESPLLIGQQS 365
Score = 96.0 bits (239), Expect = 2e-23
Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 18/201 (8%)
Query: 1 MPQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 59
MP P + ++ + V+W + G+RI + + ++ +
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWERST------TPDITGYRITTTPTNGQQGNSLEEVV 54
Query: 60 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINP 119
++ L P +Y V V + E + + P + + I
Sbjct: 55 HADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPIS---DTIIPEVP--QLTDLSFVDITD 109
Query: 120 TTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY 179
+++ + W ++ S IIGY++ V + + D + + + L PG Y
Sbjct: 110 SSIGLRWTPLNSS----TIIGYRITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPGIDY 163
Query: 180 HMRVLAFSNGGDGRMSSPAIT 200
+ V+ NGG+ ++
Sbjct: 164 DISVITLINGGESAPTTLTQQ 184
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 107 bits (267), Expect = 7e-27
Identities = 37/241 (15%), Positives = 75/241 (31%), Gaps = 14/241 (5%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYY-LSR 60
P + + S + V W+ I ++ R Y + ++ + +++
Sbjct: 160 PLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQ 219
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN-- 118
TT + ++P Y +V A N G + K P PP+ +++ N
Sbjct: 220 TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANST 279
Query: 119 -----PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV----GNTLDAD 169
TV + W P + P+ YKV + S G
Sbjct: 280 VNSDGSVTVTIVWD--LPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVI 337
Query: 170 IVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYSASTTLLLVMSS 229
+ L P Y + + A + G R+ S ++ + + + + +
Sbjct: 338 LEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPF 397
Query: 230 T 230
Sbjct: 398 Q 398
Score = 104 bits (260), Expect = 6e-26
Identities = 37/220 (16%), Positives = 68/220 (30%), Gaps = 41/220 (18%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKED---NPEETAVYYLSRTTRNWALIVGL 71
+ V W E + + ++++ E N + T N+ ++ L
Sbjct: 416 GQLQVKVYWKKTE------DPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDL 469
Query: 72 QPDTKYYVKVMAYNNAGEGPESERYL----------------------ERTYRKAPQKP- 108
KY V V + K KP
Sbjct: 470 SFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPE 529
Query: 109 -PSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQ--DMSRANDTIIPVGNT 165
SA I T H +W+ ++ + +P+ G++V EV + ++II
Sbjct: 530 NLSASFIVQDVNITGHFSWK-MAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQI 588
Query: 166 LDAD-----IVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
L +D + +L P Y + V + GG+G +
Sbjct: 589 LPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFR 628
Score = 81.5 bits (200), Expect = 6e-18
Identities = 31/249 (12%), Positives = 65/249 (26%), Gaps = 45/249 (18%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
+ S + + W+ E + + +W ++ V +
Sbjct: 271 ANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKV-----FWSWMVSSKSLVPTKKKR 325
Query: 62 TR------NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIK 115
+ N ++ LQPD Y V++ A G+ + + +K
Sbjct: 326 RKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVK 385
Query: 116 ----------------------------GINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 147
V V W E+ + Y VR +
Sbjct: 386 TRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYW----KKTEDPTVNRYHVRWFP 441
Query: 148 V--DQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 205
+ + ++ + + + DLS +Y + V + + T
Sbjct: 442 EACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCS 501
Query: 206 EKEFKSGSP 214
+ KS P
Sbjct: 502 ALKGKSHKP 510
Score = 60.7 bits (146), Expect = 7e-11
Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 6/145 (4%)
Query: 93 SERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRV---WEVD 149
+ + + Y+ P KP + + + V W S + Y V+ + +
Sbjct: 148 TCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWS--SKFNISIEPVIYVVQRRWNYGIH 205
Query: 150 QDMSRAND-TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKE 208
A + + D+ P + Y RV A + G ++P+ F+ ++
Sbjct: 206 PSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPS 265
Query: 209 FKSGSPALYSASTTLLLVMSSTLYI 233
L A++T+ S T+ I
Sbjct: 266 APPAPANLRLANSTVNSDGSVTVTI 290
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 99.0 bits (247), Expect = 8e-27
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P AP+ V +R +ST I V W E G++ G+R+ Y + +
Sbjct: 18 PSSAPRDVQARMLSSTTILVQWKEPE----EPNGQIQGYRVYYTMDPTQHVNNWMKHNVA 73
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
I L P Y VKV+A+ + G+GP S T PS+
Sbjct: 74 DSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVIT---QTGSGPSS 120
Score = 87.1 bits (216), Expect = 4e-22
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 147
G S L +T +AP P V + ++ TT+ V W+ P I GY+V
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWK--EPEEPNGQIQGYRVYYTM 58
Query: 148 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
D N V ++ I +L P K Y ++VLAF++ GDG +SS
Sbjct: 59 -DPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSD 107
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 106 bits (265), Expect = 1e-26
Identities = 38/208 (18%), Positives = 65/208 (31%), Gaps = 15/208 (7%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPI------ELIRENIRGRLIGHRIKYWKEDNPEETA 54
P AP + + + + W P E I ++
Sbjct: 332 RPPSAPHYLTAV-GMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRY 390
Query: 55 VYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHI 114
TR + L+P Y V A N S + + Q P V +
Sbjct: 391 SEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTAS-VSINQTEPPKVRL 449
Query: 115 KGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLS 174
+G + T++ V+W P ++ + Y+V + N + + DL+
Sbjct: 450 EGRSTTSLSVSWS--IPPPQQSRVWKYEVTYRKKGDS----NSYNVRRTEGFSVTLDDLA 503
Query: 175 PGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
P Y ++V A + G G S FQ
Sbjct: 504 PDTTYLVQVQALTQEGQGA-GSKVHEFQ 530
Score = 60.9 bits (147), Expect = 6e-11
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
+ Q P V G ++T+++V+W+ + R+ + + Y K+ + V R
Sbjct: 439 INQTEPPKVRLEGRSTTSLSVSWSIPP--PQQ--SRVWKYEVTYRKKGDSNSYNVR---R 491
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 100
T + L PDT Y V+V A G+G S+ + +T
Sbjct: 492 TEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT 531
Score = 54.8 bits (131), Expect = 7e-09
Identities = 22/168 (13%), Positives = 39/168 (23%), Gaps = 15/168 (8%)
Query: 44 YWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGP-ESERYLERTYR 102
Y K ++ + + + + + T + EG + +
Sbjct: 271 YEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPC 330
Query: 103 KAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEE--PIIGYKVRVWEVDQDMSRANDTII 160
P P + V + W P + I Y V + +
Sbjct: 331 TRPPSAPHYLTAV-GMGAKVELRWT---PPQDSGGREDIVYSVTCEQCWPESGECGPCEA 386
Query: 161 PV--------GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
V + DL P Y V A + S T
Sbjct: 387 SVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRT 434
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 97.4 bits (243), Expect = 2e-26
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
P PQ + G ++ + W+P GR+I + + + ++ +E
Sbjct: 7 GPSGFPQNLHVTGLTTSTTELAWDPPV--LAERNGRIISYTVVFRDINSQQELQN----I 60
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 100
TT + GL+PDT Y +KV A+ + G GP S RT
Sbjct: 61 TTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
Score = 73.1 bits (180), Expect = 4e-17
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 99 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 158
+ P P +H+ G+ +T + W + II Y V +++ N T
Sbjct: 2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNIT 61
Query: 159 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
+ L P Y ++V A+++ G G +S I +
Sbjct: 62 -----TDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPS-IQSR 99
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 102 bits (255), Expect = 3e-26
Identities = 35/199 (17%), Positives = 68/199 (34%), Gaps = 22/199 (11%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP + T+++ W P +L G+R++ ++ L+ + +
Sbjct: 23 APTDLKFTQVTPTSLSAQWTPPN-------VQLTGYRVRVTPKEKTGPMKEINLAPDSSS 75
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
++ GL TKY V V A + ++ PP + TT+ +
Sbjct: 76 -VVVSGLMVATKYEVSVYALKDTLTSRPAQ---GVVTTLENVSPPRRARVTDATETTITI 131
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 184
+WR + + E I G++V + + I L PG Y + +
Sbjct: 132 SWR--TKT---ETITGFQVDAVPANGQTPIQRTI---KPDVRSYTITGLQPGTDYKIYLY 183
Query: 185 AFSNGGDGRMSSPAITFQM 203
++ SSP +
Sbjct: 184 TLNDNAR---SSPVVIDAS 199
Score = 92.6 bits (230), Expect = 1e-22
Identities = 32/191 (16%), Positives = 53/191 (27%), Gaps = 21/191 (10%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P+ T I ++W + G ++ +
Sbjct: 112 NVSPPRRARVTDATETTITISWRTKT-------ETITGFQVDAVPANGQTPIQRTIKPDV 164
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 121
I GLQP T Y + + N+ PS + P +
Sbjct: 165 RS--YTITGLQPGTDYKIYLYTLNDNARSSPVV-----IDASTAIDAPSNLRFLATTPNS 217
Query: 122 VHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHM 181
+ V+W+ P I GY ++ + P +A I L PG Y +
Sbjct: 218 LLVSWQ--PP---RARITGYIIKYEKPGSPPREV--VPRPRPGVTEATITGLEPGTEYTI 270
Query: 182 RVLAFSNGGDG 192
V+A N
Sbjct: 271 YVIALKNNQKS 281
Score = 56.7 bits (137), Expect = 8e-10
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 85 NNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVR 144
++ S LE ++ P+ + + PT++ W P+ + GY+VR
Sbjct: 3 HHHHH--HSSG-LEVLFQGPAIPAPTDLKFTQVTPTSLSAQWT--PPN---VQLTGYRVR 54
Query: 145 VWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 201
V ++ + P ++ + L +Y + V A + R + +T
Sbjct: 55 VTPKEKTGPMKEINLAPDSSS--VVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTT 109
Score = 54.8 bits (132), Expect = 4e-09
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP + ++ V+W P R R+ G+ IKY K +P V
Sbjct: 204 APSNLRFLATTPNSLLVSWQPP-------RARITGYIIKYEKPGSPPREVVPRPRPGVTE 256
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
A I GL+P T+Y + V+A N +
Sbjct: 257 -ATITGLEPGTEYTIYVIALKNNQKSEPLI 285
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 100 bits (251), Expect = 1e-25
Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 18/192 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + R + T V W P R ++ +KY + L
Sbjct: 17 GPTQILVRDVSDTVAFVEWTPP-------RAKVDFILLKYGLVGGEGGKTTFRLQPPLSQ 69
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ L+P ++Y V + A E S T P + + T++ +
Sbjct: 70 -YSVQALRPGSRYEVSISAVRGTNESDASS-----TQFTTEIDAPKNLRVGSRTATSLDL 123
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 184
W S E YKV + + +G T + DL PG Y + +
Sbjct: 124 EW---DNS--EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGIS 178
Query: 185 AFSNGGDGRMSS 196
A N ++
Sbjct: 179 AVMNSKQSIPAT 190
Score = 91.0 bits (226), Expect = 4e-22
Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 22/193 (11%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN-PEETAVYYLSRTTR 63
AP+ + +T++++ W+ E +++ Y +
Sbjct: 107 APKNLRVGSRTATSLDLEWDNSE-------AEAQEYKVVYSTLAGEQYHEVLVPKGIGPT 159
Query: 64 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVH 123
+ L P T+Y V + A N+ + + R P + + + T++
Sbjct: 160 TKTTLTDLVPGTEYGVGISAVMNSKQSIPATM----NARTELD-SPRDLMVTASSETSIS 214
Query: 124 VTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV 183
+ W S PI Y++ + + + + DL PG Y + +
Sbjct: 215 LIWT--KAS---GPIDHYRITFTPSS----GISSEVTVPRDRTSYTLTDLEPGAEYIISI 265
Query: 184 LAFSNGGDGRMSS 196
A S+
Sbjct: 266 TAERGRQQSLEST 278
Score = 52.5 bits (126), Expect = 2e-08
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
P+ + ++ ++ T V W P + ++ V + + +
Sbjct: 17 GPTQILVRDVSDTVAFVEWT--PPR---AKVDFILLKYGLVGGEGGKTTFRL--QPPLSQ 69
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
+ L PG RY + + A + SS T
Sbjct: 70 YSVQALRPGSRYEVSISAVRGTNESDASSTQFT 102
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 94.5 bits (235), Expect = 5e-25
Identities = 22/98 (22%), Positives = 37/98 (37%)
Query: 100 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 159
+ P P +N TT+ + W Y+ S PI G+ + D D
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62
Query: 160 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
+ G+ I L P Y +++ F+ GG+ S+
Sbjct: 63 MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNV 100
Score = 89.1 bits (221), Expect = 6e-23
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS-R 60
P P F+ N T I + W I N + G I Y D+ ++
Sbjct: 8 PVAGPYITFTDAVNETTIMLKWMYIP--ASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVE 65
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
R W I LQP+T Y +K+ +N GE S + T KA P S
Sbjct: 66 GDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICET--KARSGPSSG 114
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 92.4 bits (230), Expect = 2e-24
Identities = 21/96 (21%), Positives = 38/96 (39%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 163
P P + + ++ T + + W Y+ S PI G+ + D D + G
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEG 62
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 199
+ I L P Y +++ F+ GG+ S+ I
Sbjct: 63 SKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMI 98
Score = 86.3 bits (214), Expect = 5e-22
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS-R 60
P P ++ + T I + W I N + G I Y D+ ++
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPS--SNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE 61
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 100
++ W +I LQP+T Y +K+ +N GE S + T
Sbjct: 62 GSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 94.1 bits (234), Expect = 6e-24
Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 18/188 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + ++I + W P+ +IG+RI ++ +
Sbjct: 25 QPTDLSFVDITDSSIGLRWTPLN------SSTIIGYRITVVAAGEGIPIFEDFVDSSV-G 77
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ + GL+P Y + V N GE + T + A PP+ + I P T+ V
Sbjct: 78 YYTVTGLEPGIDYDISVYTVKNGGESTPT----TLTQQTAV-PPPTDLRFTNIGPDTMRV 132
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 184
TW + + VR V + A +I + + +L PG Y + V
Sbjct: 133 TWAPPPSI----DLTNFLVRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVS 186
Query: 185 AFSNGGDG 192
+ +
Sbjct: 187 SVYEQHES 194
Score = 64.1 bits (156), Expect = 8e-13
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 8/119 (6%)
Query: 82 MAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGY 141
M ++ S ++ + P P+ + I +++ + W ++ S IIGY
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMEVP--QPTDLSFVDITDSSIGLRWTPLNSS----TIIGY 54
Query: 142 KVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
++ V + + D + + + L PG Y + V NGG+ ++
Sbjct: 55 RITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQ 111
Score = 52.5 bits (126), Expect = 1e-08
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 7/87 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + + VTW P L ++Y N E+ A +S + N
Sbjct: 116 PPTDLRFTNIGPDTMRVTWAPPP------SIDLTNFLVRYSPVKNEEDVAELSIS-PSDN 168
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGP 91
++ L P T+Y V V + E
Sbjct: 169 AVVLTNLLPGTEYVVSVSSVYEQHEST 195
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 89.5 bits (222), Expect = 4e-23
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 2 PQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
P VAP V +S +++ W + G L+G+RI + + +
Sbjct: 18 PSVAPLNVTVFLNESSDNVDIRWMKPP--TKQQDGELVGYRISHVWQSAGISKELLEEVG 75
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 110
+ A I + V++ A G GP S+ PS
Sbjct: 76 QNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI---PAHSGPS 122
Score = 79.8 bits (197), Expect = 2e-19
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 3/121 (2%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIK-GINPTTVHVTWRYVSPSFEEEPIIGYKVRVW 146
G S L T AP P V + + V + W ++ ++GY++
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 147 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
+S+ + N A I +R+ A + GG G S P + +
Sbjct: 61 WQSAGISKELLEEVG-QNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDP-VKIFIPAH 118
Query: 207 K 207
Sbjct: 119 S 119
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 88.0 bits (218), Expect = 2e-22
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 7/118 (5%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 147
G S T + P +PP V T V + W V E + GYKV
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWN-ATDTKVLLNWEQVKAMENESEVTGYKVFYRT 59
Query: 148 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 205
Q+ + +T + + + L + Y + V A ++GGDG S ++
Sbjct: 60 SSQNNVQVLNTN---KTSAE---LVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITS 111
Score = 71.8 bits (176), Expect = 2e-16
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P P V T + + W ++ + G+++ Y +
Sbjct: 18 PSQPPGNV-VWNATDTKVLLNWEQVK--AMENESEVTGYKVFYRTSSQNNVQVL-----N 69
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
T + + L Y ++V A + G+G SE
Sbjct: 70 TNKTSAELVLPIKEDYIIEVKATTDGGDGTSSE 102
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 89.5 bits (222), Expect = 4e-22
Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 12/188 (6%)
Query: 16 STAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEETAVYYLSRT--TRNWALIVGLQ 72
S+ V ++ E G I ++ ++ + +Y ++ IVGL+
Sbjct: 21 SSTAQVQFDE----PEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLK 76
Query: 73 PDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPS 132
P+T Y V++ A N G G S +T P G + ++ V
Sbjct: 77 PETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLI--KQD 134
Query: 133 FEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 192
PI Y VR + + + + L Y + V+A + G
Sbjct: 135 DGGSPIRHYLVRYRALSSEWKPEIRL---PSGSDHVMLKSLDWNAEYEVYVVAENQQGKS 191
Query: 193 RMSSPAIT 200
+ +
Sbjct: 192 KAAHFVFR 199
Score = 59.4 bits (144), Expect = 5e-11
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 11/112 (9%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
AP+ G + +I V + IR + ++Y + + + S +
Sbjct: 109 EPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIR----HYLVRYRALSSEWKPEIRLPSGS 164
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH 113
++ L + +Y V V+A N G+ + ++ RT H
Sbjct: 165 DH--VMLKSLDWNAEYEVYVVAENQQGKSKAAH-FVFRT----AAAHHHHHH 209
Score = 51.0 bits (122), Expect = 4e-08
Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 6/127 (4%)
Query: 104 APQKPPSAVHIKGINPT--TVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRANDTI 159
A PS+ I + P T V + P PI+ YK V +++
Sbjct: 4 AQADTPSSPSIDQVEPYSSTAQVQFD--EPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 160 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYSA 219
IV L P Y +R+ A + G G +S+ + +
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGE 121
Query: 220 STTLLLV 226
+ V
Sbjct: 122 DGNSIKV 128
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 93.0 bits (230), Expect = 5e-22
Identities = 35/208 (16%), Positives = 63/208 (30%), Gaps = 9/208 (4%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P PQ + + I +WNP + R + +
Sbjct: 281 PPDTPQQLNCETHDLKEIICSWNPGRVTALV-GPRATSYTLVESFSGKYVRLKRAEAPTN 339
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 121
L L Y + A+N G + L K P++ +K IN T
Sbjct: 340 ESYQLLFQMLPNQEIYNFTLNAHNPLGRSQST--ILVNITEKVYPHTPTSFKVKDINSTA 397
Query: 122 VHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV-GNTLDADIVDLSPGKRYH 180
V ++W P + ++ + + + + N TI V ++ + L+P Y
Sbjct: 398 VKLSWHL--PGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYT 455
Query: 181 MRVLAFSNGGDGRMS--SPAITFQMGEE 206
R+ + + S S E
Sbjct: 456 FRIRCSTETF-WKWSKWSNKKQHLTTEA 482
Score = 40.6 bits (94), Expect = 3e-04
Identities = 21/181 (11%), Positives = 48/181 (26%), Gaps = 21/181 (11%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
N +W G Y + Y L +T+ I L
Sbjct: 8 NLQVWQCSWKA---------PSGTGRGTDYEVCIEQRSRSCYQLEKTSIK---IPALSH- 54
Query: 75 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPT-TVHVTWRYVSPSF 133
Y + + + ++ G E+ P P + + T T+++ W F
Sbjct: 55 GDYEITINSLHDFGSSTSKFTLNEQNVSLIPD-TPEILQLSADFSTSTLYLKWNDRGSVF 113
Query: 134 EEEPIIGYKVRVWEVDQ--DMSRANDTIIPVGNTLDADIVDLS----PGKRYHMRVLAFS 187
+ ++++V + + G S + + + +
Sbjct: 114 PHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYI 173
Query: 188 N 188
+
Sbjct: 174 D 174
Score = 36.0 bits (82), Expect = 0.008
Identities = 10/112 (8%), Positives = 30/112 (26%), Gaps = 2/112 (1%)
Query: 92 ESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSF-EEEPIIGYKVRVWEVDQ 150
E + + P P ++ + + + +W + Y + +
Sbjct: 268 EDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGK 327
Query: 151 DMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
+ P + L + Y+ + A + G + + +
Sbjct: 328 YVRL-KRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITE 378
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 87.9 bits (218), Expect = 8e-22
Identities = 23/196 (11%), Positives = 56/196 (28%), Gaps = 23/196 (11%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P+ + T +++ W + +R+ Y +
Sbjct: 9 NPKDLEVSDPTETTLSLRWRRPV-------AKFDRYRLTYVSPSGKKNEME---IPVDST 58
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
++ GL T+Y + ++A + + P + I + V
Sbjct: 59 SFILRGLDAGTEYTISLVAEKGRHKSKPT----TIKGSTVVG-SPKGISFSDITENSATV 113
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 184
+W + Y+V + + G+ +V L PG Y++ ++
Sbjct: 114 SWTPPRS-----RVDSYRVSYVPITGGTPN---VVTVDGSKTRTKLVKLVPGVDYNVNII 165
Query: 185 AFSNGGDGRMSSPAIT 200
+ + S +
Sbjct: 166 SVKGFEESEPISGILK 181
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 88.3 bits (219), Expect = 1e-21
Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 21/199 (10%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKY--------WKEDN---PEETAVYYLSRTTR 63
+ ++ + W N ++ +++Y W+ N P +
Sbjct: 14 SDESVMLRWMV----PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKS 69
Query: 64 NWALIVGLQPDTKYYVKVMAYNNAGEGPESE----RYLERTYRKAPQKPPSAVHIKGINP 119
A + L+P Y +++A + + ES YL+ P P + I+ +
Sbjct: 70 FTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSE 129
Query: 120 TTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRY 179
T V + W S + +E I GY TI I L Y
Sbjct: 130 TAVVLHWSLASDA-DEHLITGYYAYYRPSSSAGEYFKATIEGAHAR-SFKIAPLETATMY 187
Query: 180 HMRVLAFSNGGDGRMSSPA 198
++ +FS S+
Sbjct: 188 EFKLQSFSAASASEFSALK 206
Score = 62.1 bits (151), Expect = 4e-12
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 3/93 (3%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P P+ + ++ TA+ + W+ + + G+ Y + E +
Sbjct: 115 PMPVPELLEIEEYSETAVVLHWSLAS---DADEHLITGYYAYYRPSSSAGEYFKATIEGA 171
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
I L+ T Y K+ +++ A S
Sbjct: 172 HARSFKIAPLETATMYEFKLQSFSAASASEFSA 204
Score = 56.4 bits (136), Expect = 5e-10
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV--RVWEVDQDMSRANDTIIPV--- 162
PP+ ++ ++ +V + W P + PI+ +KV R+ ++ ND I
Sbjct: 4 PPTPPNVTRLSDESVMLRWM--VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 163 -----GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSP 214
G + A + DL P Y R+LA + D + S+ + F +
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPV 118
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 88.2 bits (219), Expect = 1e-21
Identities = 38/194 (19%), Positives = 69/194 (35%), Gaps = 13/194 (6%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
PQ + + T++ +TW+P + ++ + ++ + + V T
Sbjct: 8 PPQDLKVKEVTKTSVTLTWDPPL---LDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS- 63
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ LQ YY +V+A N G G +E + P PP + + + +V +
Sbjct: 64 -WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPL-PPGKITLMDVTRNSVSL 121
Query: 125 TWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV 183
+W P + I+GY V + D +A I L G+ Y RV
Sbjct: 122 SWE--KPEHDGGSRILGYIVEMQTKGSDKW----ATCATVKVTEATITGLIQGEEYSFRV 175
Query: 184 LAFSNGGDGRMSSP 197
A + G
Sbjct: 176 SAQNEKGISDPRQL 189
Score = 57.4 bits (139), Expect = 2e-10
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 104 APQKP--PSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTII 160
A P P + +K + T+V +TW P + I Y V E + +A T+
Sbjct: 2 AMDTPGPPQDLKVKEVTKTSVTLTWD--PPLLDGGSKIKNYIV---EKRESTRKAYSTVA 56
Query: 161 PVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 201
+ + L G Y+ RVLA + G G + A +
Sbjct: 57 TNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESV 97
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 84.1 bits (208), Expect = 5e-21
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 4/110 (3%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P + P GV + + I +TW L + + +++ +
Sbjct: 8 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN--ANA 65
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
T L+ GL+P+T Y VM S T+ + P S
Sbjct: 66 TTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSG--PSSG 113
Score = 58.7 bits (142), Expect = 1e-11
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 5/97 (5%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRY--VSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP 161
P PP V ++ T+ +TW + + Y VR ++
Sbjct: 7 GPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK---YKNA 63
Query: 162 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 198
TL + L P Y V+ S A
Sbjct: 64 NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTA 100
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 87.9 bits (218), Expect = 2e-20
Identities = 33/198 (16%), Positives = 74/198 (37%), Gaps = 14/198 (7%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+P GV + T V++N + + + +++ + + V T
Sbjct: 198 SPYGVKIIELSQTTAKVSFNKPD---SHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTM- 253
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA--VHIKGINPTTV 122
++ L+P+T Y ++V A N G+G S+ ++ P + PS +H + + +
Sbjct: 254 -VVLNNLEPNTTYEIRVAAVNGKGQGDYSK---IEIFQTLPVREPSPPSIHGQPSSGKSF 309
Query: 123 HVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMR 182
++ PI+ Y V+ D++ + GN + L Y ++
Sbjct: 310 KLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLEKKV--QGNKDHIILEHLQWTMGYEVQ 365
Query: 183 VLAFSNGGDGRMSSPAIT 200
+ A + G + +
Sbjct: 366 ITAANRLGYSEPTVYEFS 383
Score = 61.7 bits (150), Expect = 2e-11
Identities = 12/104 (11%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+P + + + + ++ +++ ++ + + ++ + E+ + + ++
Sbjct: 295 SPPSIHGQPSSGKSFKLSITK----QDDGGAPILEYIV-KYRSKDKEDQWLEKKVQGNKD 349
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKP 108
++ LQ Y V++ A N G + P KP
Sbjct: 350 HIILEHLQWTMGYEVQITAANRLGYSEPTV-----YEFSMPPKP 388
Score = 55.2 bits (133), Expect = 4e-09
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 166
P V I ++ TT V++ P PI Y+V V EV ++ + + G
Sbjct: 198 SPYGVKIIELSQTTAKVSFN--KPDSHGGVPIHHYQVDVKEVASEIWKIVRS---HGVQT 252
Query: 167 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 207
+ +L P Y +RV A + G G S I + +
Sbjct: 253 MVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVRE 293
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 83.2 bits (205), Expect = 7e-20
Identities = 25/191 (13%), Positives = 62/191 (32%), Gaps = 28/191 (14%)
Query: 16 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 75
+ + WN + + + +++ +++ + ++ I GL+P
Sbjct: 15 PNSHPIQWNAPQ------PSHISKYILRWRPKNSVGRWKEATIPGHLNSY-TIKGLKPGV 67
Query: 76 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKP--------------PSAVHIKGINPTT 121
Y ++++ G + T P ++ + I ++
Sbjct: 68 VYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASS 127
Query: 122 VHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHM 181
V+W S + G++V ++ + +I DL PG++Y +
Sbjct: 128 FVVSWVSASD-----TVSGFRVEYELSEEGDEPQYLDL--PSTATSVNIPDLLPGRKYIV 180
Query: 182 RVLAFSNGGDG 192
V S G+
Sbjct: 181 NVYQISEDGEQ 191
Score = 52.0 bits (124), Expect = 2e-08
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
+ P + + W PS I Y +R + R + IP G+
Sbjct: 4 VEVFITETPSQPNSHPIQWNAPQPS----HISKYILRWRPKNSV-GRWKEATIP-GHLNS 57
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
I L PG Y ++++ G ++ T
Sbjct: 58 YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFT 90
Score = 49.7 bits (118), Expect = 1e-07
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
+ +++ V+W + G R++Y + +E L T
Sbjct: 111 SPLVATSESVTEITASSFVVSWVSAS-------DTVSGFRVEYELSEEGDEPQYLDLPST 163
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
+ I L P KY V V + GE
Sbjct: 164 ATS-VNIPDLLPGRKYIVNVYQISEDGEQSLIL 195
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 77.4 bits (191), Expect = 1e-18
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 147
G S R + + P P + +PT++ VTW +P I YK+ E
Sbjct: 1 GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWE--TPVSGNGEIQNYKLYYME 57
Query: 148 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
D + D ++ I L Y RV+A++ G G S+P + + +
Sbjct: 58 KGTDKEQDVDV-----SSHSYTINGLKKYTEYSFRVVAYNKHGPGV-STPDVAVRTLSD 110
Score = 70.8 bits (174), Expect = 5e-16
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+ + + T+I VTW + G + +++ Y ++ +E V + +
Sbjct: 20 PAPNLRAYAASPTSITVTWETPV----SGNGEIQNYKLYYMEKGTDKEQDV----DVSSH 71
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
I GL+ T+Y +V+AYN G G + RT + P S
Sbjct: 72 SYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG--PSSG 116
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 77.0 bits (190), Expect = 2e-18
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 2 PQVAPQG--VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDN-PEETAVYYL 58
P AP+ V +R A+ V+W P G++ + + Y + N P + +
Sbjct: 8 PTSAPKDLTVITREGKPRAVIVSWQPPL----EANGKITAYILFYTLDKNIPIDDWIMET 63
Query: 59 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
R I+ L DT YY ++ A N+ G GP S+ L RT + + P S
Sbjct: 64 ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG--PSSG 114
Score = 66.6 bits (163), Expect = 2e-14
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 5/109 (4%)
Query: 100 TYRKAPQKPPSAVHIKGI--NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND 157
+ P P + + P V V+W+ P I Y +
Sbjct: 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQ--PPLEANGKITAYILFYTLDKNIPIDDWI 60
Query: 158 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
G+ L I+DL+ Y+ R+ A ++ G G +S P I F+ +
Sbjct: 61 METISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDP-ILFRTLKV 108
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 78.9 bits (194), Expect = 4e-18
Identities = 28/205 (13%), Positives = 53/205 (25%), Gaps = 9/205 (4%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P+ + + W+ +K + T
Sbjct: 10 KPKNLSCIVNEGKKMRCEWDG-----GRETHLETNFTLKSEWATHKFADCKAKRDTPTSC 64
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ V V A N G+ + Y+ P PP + + + +
Sbjct: 65 T-VDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPN-PPHNLSVINSEELSSIL 122
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVL 184
+ +PS + I+ Y ++ D + DL P Y R+
Sbjct: 123 KLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIR 182
Query: 185 AFSNGGDGRMS--SPAITFQMGEEK 207
G G S S + E++
Sbjct: 183 CMKEDGKGYWSDWSEEASGITYEDR 207
Score = 48.1 bits (114), Expect = 5e-07
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 9 VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS-RTTRNWAL 67
V + S+ + +TW ++ + I+Y +D + + +TR+
Sbjct: 112 VINSEELSSILKLTWTN----PSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFT 167
Query: 68 IVGLQPDTKYYVKVMAYNNAGEG---PESERYLERTYRKAPQKPPS 110
+ L+P T+Y ++ G+G SE TY P K PS
Sbjct: 168 VQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPS 213
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 75.6 bits (186), Expect = 8e-18
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+ T++ V+W G L G+RI + + + +YL T
Sbjct: 20 PVGHLSFSEILDTSLKVSWQE----PGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLE 75
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ + GL T Y ++V A + G+G S P PS+
Sbjct: 76 Y-RVTGLTALTTYTIEVAAMTSKGQGQVSA---STISSGVPPSGPSS 118
Score = 73.2 bits (180), Expect = 6e-17
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 147
G S L RT+ P P + I T++ V+W+ P + + GY++ E
Sbjct: 1 GSSGSSGPQLVRTHEDVP-GPVGHLSFSEILDTSLKVSWQ--EPGEKNGILTGYRISWEE 57
Query: 148 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
++ +R + TL+ + L+ Y + V A ++ G G++S+ I+
Sbjct: 58 YNRTNTRVTHYLPN--VTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSG 110
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 75.7 bits (186), Expect = 9e-18
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 4/110 (3%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P + P GV + A+ V+W + + + + +++ + T
Sbjct: 18 PMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW-RTSFSASAKYKSEDTT 76
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ + GL+P+T Y VM N S TY + P S
Sbjct: 77 SLS-YTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASG--PSSG 123
Score = 56.4 bits (136), Expect = 1e-10
Identities = 21/113 (18%), Positives = 30/113 (26%), Gaps = 5/113 (4%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEE--PIIGYKVRV 145
G S P PP V + V V+W S ++ + Y VR
Sbjct: 1 GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60
Query: 146 WEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 198
++ +L L P Y V+ N S A
Sbjct: 61 RTSFSASAK---YKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTA 110
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 75.5 bits (186), Expect = 9e-18
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P G+ +T++ + W P G ++ ++I + TA + +
Sbjct: 30 PPMGILFPEVRTTSVRLIWQPPA----APNGIILAYQITHRLNTTTANTATVEVLAPSAR 85
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
GL+P++ Y ++ A G G +E + T +++ P S
Sbjct: 86 QYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSG--PSSG 130
Score = 70.1 bits (172), Expect = 1e-15
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 5/118 (4%)
Query: 81 VMAYNNAGEG-PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPII 139
+ G+G P LERT P PP + + T+V + W+ P+ I+
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQ--PPAAPNGIIL 59
Query: 140 GYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
Y++ + A ++ + L P Y R+ A + G G +
Sbjct: 60 AYQITHRLNTTTANTATVEVLA-PSARQYTATGLKPESVYLFRITAQTRKGWGEAAEA 116
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 74.7 bits (184), Expect = 2e-17
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + + T+I ++W P + + + Y ++ EE + T+
Sbjct: 20 QPLNFKAEPESETSILLSWTPPR------SDTIANYELVYKDGEHGEEQRITIEPGTS-- 71
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ GL+P++ YY ++ A + G G + RT PS+
Sbjct: 72 -YRLQGLKPNSLYYFRLAARSPQGLGASTAEISART---MQSSGPSS 114
Score = 70.8 bits (174), Expect = 4e-16
Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 10/119 (8%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 147
G S T P P + + T++ ++W P + I Y++ +
Sbjct: 1 GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWT--PP--RSDTIANYELVYKD 55
Query: 148 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
+ + I + + L P Y+ R+ A S G G ++ I+ + +
Sbjct: 56 GEHG----EEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAE-ISARTMQS 109
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 72.7 bits (179), Expect = 7e-17
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+ + + + T+I +TW P G + G+R+ + +E +
Sbjct: 10 PVENLQAVSTSPTSILITWEPPA----YANGPVQGYRLFCTEVSTGKEQNI----EVDGL 61
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ GL+ T+Y ++ +AYN G G ++ T + P S
Sbjct: 62 SYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG--PSSG 106
Score = 66.5 bits (163), Expect = 2e-14
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
P + +PT++ +TW P++ P+ GY++ EV + + + L
Sbjct: 10 PVENLQAVSTSPTSILITWE--PPAYANGPVQGYRLFCTEVSTGKEQNIEV-----DGLS 62
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
+ L Y +R LA++ G G +
Sbjct: 63 YKLEGLKKFTEYSLRFLAYNRYGPGVSTDD 92
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 76.8 bits (188), Expect = 8e-17
Identities = 33/212 (15%), Positives = 59/212 (27%), Gaps = 15/212 (7%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY--WKEDNPEETAVYYL 58
+P P+ + + W+ GR + E + A
Sbjct: 102 LPPEKPKNLSCIVNEGKKMRCEWDG---------GRETHLETNFTLKSEWATHKFADCKA 152
Query: 59 SRTTRNW-ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI 117
R T + V V A N G+ + Y+ P PP + +
Sbjct: 153 KRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPN-PPHNLSVINS 211
Query: 118 NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGK 177
+ + + +PS + I+ Y ++ D + DL P
Sbjct: 212 EELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFT 271
Query: 178 RYHMRVLAFSNGGDGRMS--SPAITFQMGEEK 207
Y R+ G G S S + E++
Sbjct: 272 EYVFRIRCMKEDGKGYWSDWSEEASGITYEDR 303
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 72.5 bits (178), Expect = 8e-17
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
A + + +++++ W G ++ + +KY ++ ++V +L +T+ N
Sbjct: 10 AVSDIRVTRSSPSSLSLAWAVPR----APSGAVLDYEVKYHEKGAEGPSSVRFL-KTSEN 64
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
A + GL+ Y V+V A + AG GP + + +T PS+
Sbjct: 65 RAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQT---QLDSGPSS 108
Score = 60.2 bits (146), Expect = 3e-12
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
S + + +P+++ + W P ++ Y+V+ E + + + N
Sbjct: 10 AVSDIRVTRSSPSSLSLAWA--VPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENR-- 65
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
A++ L G Y ++V A S G G Q
Sbjct: 66 AELRGLKRGASYLVQVRARSEAGYGPFGQE-HHSQ 99
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 76.9 bits (188), Expect = 2e-16
Identities = 31/204 (15%), Positives = 59/204 (28%), Gaps = 9/204 (4%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P PQ + + I +WNP I + R + +
Sbjct: 286 PPDVPQKLSCETHDLKEIICSWNPGR-ITGLVGPRNTEYTLFESISGKSAVFHRIEGLTN 344
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 121
+ + + N G+ + + P+++ +K IN T
Sbjct: 345 ETYRLGVQMHPGQEIHNFTLTGRNPLGQ--AQSAVVINVTERVAPHDPTSLKVKDINSTV 402
Query: 122 VHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV-GNTLDADIVDLSPGKRYH 180
V +W P + + ++ + + + N TI +T + L+P Y
Sbjct: 403 VTFSWY--LPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYT 460
Query: 181 MRVLAFSNGGDGRMS--SPAITFQ 202
RV S + S S
Sbjct: 461 FRVRCSSKTF-WKWSRWSDEKRHL 483
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 71.3 bits (175), Expect = 3e-16
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 147
G S + R P P+ + + PT++ V+W+ E P+ GY V
Sbjct: 1 GSSGSSGSHDSRLTAGVP-DTPTRLVFSALGPTSLRVSWQ---EPRCERPLQGYSVEYQL 56
Query: 148 VD-QDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
++ ++ R N IP + DL P Y RV A S G GR IT +
Sbjct: 57 LNGGELHRLN---IPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVITIE 109
Score = 60.9 bits (148), Expect = 2e-12
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 8/107 (7%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + T++ V+W L G+ ++Y + E + + +
Sbjct: 20 TPTRLVFSALGPTSLRVSWQEPR---CE--RPLQGYSVEYQLLNGGELHRLN-IPNPAQT 73
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
++ L P+ Y +V A + G G E E + T P S
Sbjct: 74 SVVVEDLLPNHSYVFRVRAQSQEGWGREREGVI--TIESQVSGPSSG 118
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 66.7 bits (163), Expect = 1e-14
Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 11/109 (10%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
++ + + +TW G + + + +D
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRP---RNPGGNLSYELHVLNQDEEWH------QMV 59
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 110
L+ LQPDT Y V+V G GP S + RT P P S
Sbjct: 60 LEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT--SPPSGPSS 106
Score = 52.5 bits (126), Expect = 2e-09
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEP--IIGYKVRVWEVDQDMSRANDTIIP 161
A ++ + P + +TW + S P + Y++ V D++ +
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTW---AGSRPRNPGGNLSYELHVLNQDEEWHQ------- 57
Query: 162 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
+ + L P Y +RV + G G SP F+
Sbjct: 58 MVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPF-SPDHEFR 97
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 66.7 bits (163), Expect = 1e-14
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+ +I ++W E G ++ + I+Y+++++ E + ++R+ N
Sbjct: 10 TVPIMHQVSATMRSITLSWPQPE----QPNGIILDYEIRYYEKEHNEFNSS--MARSQTN 63
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
A I GL+P Y V+V A AG G S + +T PS+
Sbjct: 64 TARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT---LTDSGPSS 107
Score = 59.8 bits (145), Expect = 5e-12
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
+H ++ ++W P I+ Y++R +E + + ++ T
Sbjct: 10 TVPIMHQVSATMRSITLSWP--QPEQPNGIILDYEIRYYEKEHNEFNSSMA---RSQTNT 64
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
A I L PG Y ++V A + G G+ S + FQ
Sbjct: 65 ARIDGLRPGMVYVVQVRARTVAGYGKFSGK-MCFQ 98
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 65.5 bits (160), Expect = 3e-14
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 163
+ P+ + + PT++ ++W + + + Y++ E D T+ G
Sbjct: 6 SVSSVPTKLEVVDATPTSLKISWD--AYYSSWQNVKYYRITYGETGGDSPVQEFTV--PG 61
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
A I L PG Y + V A+ G + I+
Sbjct: 62 YYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISIN 100
Score = 60.2 bits (146), Expect = 3e-12
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + T++ ++W+ + + +RI Y + + +
Sbjct: 10 VPTKLEVVDATPTSLKISWDAYY----SSWQNVKYYRITYGETGGDSPVQEFTVPGYYST 65
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 102
A I GL+P Y + V AY+ G E + YR
Sbjct: 66 -ATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 65.5 bits (160), Expect = 5e-14
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+ T++++ W E + N G ++ + IKY+++D ++ Y +
Sbjct: 13 QVVVIRQERAGQTSVSLLWQEPE--QPN--GIILEYEIKYYEKDKEMQS--YSTLKAVTT 66
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
A + GL+P T+Y +V A +AG G S+ T P P S
Sbjct: 67 RATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET--GKPSGPSSG 111
Score = 62.4 bits (152), Expect = 5e-13
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 99 RTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 158
+ + AP + + T+V + W+ P I+ Y+++ +E D++M +
Sbjct: 5 SSGQAAPS-QVVVIRQERAGQTSVSLLWQ--EPEQPNGIILEYEIKYYEKDKEMQSYSTL 61
Query: 159 IIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
T A + L PG RY +V A ++ G GR S A+ +
Sbjct: 62 ---KAVTTRATVSGLKPGTRYVFQVRARTSAGCGR-FSQAMEVE 101
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 64.8 bits (158), Expect = 6e-14
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 5 APQGVFSRGFN--STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 62
AP+ + I W P + G + + ++Y + + + R
Sbjct: 10 APRNLQLSLPREAEGVIVGHWAP----PIHTHGLIREYIVEYSRSGSKMWASQ----RAA 61
Query: 63 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
N+ I L +T Y V+V A + G G S+ T + + P S
Sbjct: 62 SNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG--PSSG 108
Score = 50.9 bits (122), Expect = 9e-09
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 8/100 (8%)
Query: 99 RTYRKAPQKPPS-AVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAND 157
+ P P + + + + W P I Y V M +
Sbjct: 2 SSGSSGPDAPRNLQLSLPREAEGVIVGHWA--PPIHTHGLIREYIVEYSRSGSKMWASQR 59
Query: 158 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
+ +I +L Y +RV A ++ G G S
Sbjct: 60 A-----ASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSDS 94
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 69.1 bits (168), Expect = 7e-14
Identities = 28/237 (11%), Positives = 64/237 (27%), Gaps = 22/237 (9%)
Query: 6 PQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKE--DNPEETAVYYLSRTTR 63
Q + +N + +W P + + YW E D+ + Y +
Sbjct: 140 VQDMDCVYYNWQYLLCSWKP-----GIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQN 194
Query: 64 NWALI--VGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 121
+ +Y+ V + S + PP + +
Sbjct: 195 IGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQ-LQNIVKPLPPVYLTFTRESSCE 253
Query: 122 VHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHM 181
+ + W Y++ + E D + A + + ++
Sbjct: 254 IKLKWSI-PLGPIPARCFDYEIEIREDDTTLVTATV------ENETYTLKTTNETRQLCF 306
Query: 182 RVLAFSN---GGDGRMS--SPAITFQMGEEKEFKSGSPALYSASTTLLLVMSSTLYI 233
V + N DG S S ++ + + L +L++ + L +
Sbjct: 307 VVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTLLRFWLPFGFILILVIFVTGLLL 363
Score = 35.5 bits (81), Expect = 0.009
Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 8/77 (10%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + +S I + W+ I R + I+ ++D TA
Sbjct: 240 PPVYLTFTRESSCEIKLKWSIPL---GPIPARCFDYEIEIREDDTTLVTAT-----VENE 291
Query: 65 WALIVGLQPDTKYYVKV 81
+ + V
Sbjct: 292 TYTLKTTNETRQLCFVV 308
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 64.7 bits (158), Expect = 9e-14
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP+ V +S + ++W P +G + + + +E + E A+ +
Sbjct: 20 APRDVVPVLVSSRFVRLSWRP----PAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQ 75
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ L+P+ Y +V+AYN G G S+ T P+ PS+
Sbjct: 76 -LTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT---QPESGPSS 118
Score = 62.8 bits (153), Expect = 4e-13
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 147
G S + + P P V ++ V ++WR P+ + I + V
Sbjct: 1 GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSWR--PPAEAKGNIQTFTVFFSR 57
Query: 148 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
+ RA +T P +L + +L P Y RV+A++ G G S P
Sbjct: 58 EGDNRERALNTTQP--GSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQP 105
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 68.3 bits (166), Expect = 1e-13
Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 8/196 (4%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
+ + W P + L+ + + ++ +E Y + L V
Sbjct: 107 PLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDS 166
Query: 75 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI--NPTTVHVTWRYVSPS 132
+ Y V + ++ G S+ + PP+ + + + NP + VTW+
Sbjct: 167 SFYIVSMCVASSVGSK-FSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSW 225
Query: 133 FEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDG 192
+ +++R S+ T + I D G R+ +++ A G G
Sbjct: 226 NSSFYRLRFELRYRAER---SKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQG 282
Query: 193 RMS--SPAITFQMGEE 206
S SP E
Sbjct: 283 EWSEWSPEAMGTPWTE 298
Score = 47.9 bits (113), Expect = 9e-07
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 4/117 (3%)
Query: 9 VFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALI 68
V + N ++VTW + + ++Y E + T +I
Sbjct: 205 VTAVARNPRWLSVTWQDPHSWNSS--FYRLRFELRYRAERSKTFTTWMVKDLQHH--CVI 260
Query: 69 VGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVT 125
++ V++ A G+G SE E + + P T
Sbjct: 261 HDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALTT 317
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 64.2 bits (156), Expect = 1e-13
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV--RVWEVDQDMSRANDTIIP 161
PP+ ++ ++ +V + W P + PI+ +KV R+ ++ ND I
Sbjct: 1 GSTYPPTPPNVTRLSDESVMLRWM--VPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58
Query: 162 --------VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 203
+G + A + DL P Y R+LA + D + S+ + F +
Sbjct: 59 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL 108
Score = 40.7 bits (95), Expect = 5e-05
Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 15/101 (14%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKY--------WK---EDNPEET 53
P + ++ + W N ++ +++Y W+ ++ P
Sbjct: 5 PPTPPNVTRLSDESVMLRWMV----PRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGK 60
Query: 54 AVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
+ A + L+P Y +++A + + ES
Sbjct: 61 PKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 101
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 64.1 bits (156), Expect = 2e-13
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE---ETAVYYLSRTTRNWALIVGL 71
T + VTW + + G+R+ Y + + T A++V L
Sbjct: 28 TPTTVQVTWTV-----DRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNL 82
Query: 72 QPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ Y +KV Y N +G +SE RT ++ P S
Sbjct: 83 KKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESG--PSSG 120
Score = 56.4 bits (136), Expect = 1e-10
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 114 IKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI--IPVGNTLDADIV 171
+ PTTV VTW + I GY+V + + ++ V A +V
Sbjct: 24 PVVLTPTTVQVTWTVDRQP---QFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLV 80
Query: 172 DLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
+L G Y ++V + N G S T + EE
Sbjct: 81 NLKKGVTYEIKVRPYFNEFQGMDSES-KTVRTTEE 114
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 62.0 bits (151), Expect = 9e-13
Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP+ V + ++ I +TW + G + + + Y KE E V S
Sbjct: 20 APRDVVASLVSTRFIKLTWRTPA---SDPHGDNLTYSVFYTKEGIARER-VENTSHPGEM 75
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
I L P T Y +VMA N G G S T P+ PS+
Sbjct: 76 QVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET---QPESGPSS 119
Score = 61.3 bits (149), Expect = 2e-12
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVW 146
G S + T P P V ++ + +TWR +P+ + + Y V
Sbjct: 1 GSSGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWR--TPASDPHGDNLTYSVFYT 57
Query: 147 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
+ R +T P + I +L P Y RV+A + G G SS + + E
Sbjct: 58 KEGIARERVENTSHP--GEMQVTIQNLMPATVYIFRVMAQNKHGSG-ESSAPLRVETQPE 114
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 62.1 bits (151), Expect = 1e-12
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 10/120 (8%)
Query: 85 NNAGEGPESERYLERTYRKAP--QKPPSAVHIKGINP--TTVHVTWRYVSPSFEEEPIIG 140
++ GP ++ T+ + P + P T++ V+W P + + G
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRPLVTSIVVSWT--PPENQNIVVRG 59
Query: 141 YKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
Y + TI I +L P Y + + AF+N G+G +
Sbjct: 60 YAIGYGIGSPHA----QTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAV 115
Score = 55.5 bits (134), Expect = 3e-10
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + R T+I V+W P E N + G+ I Y +T + R
Sbjct: 30 VPSSLHVR-PLVTSIVVSWTPPE----NQNIVVRGYAIGYGIGSPHAQTIK--VDYKQRY 82
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ I L P + Y + + A+NN GEG Y R P S
Sbjct: 83 Y-TIENLDPSSHYVITLKAFNNVGEGIPL--YESAVTRPHTSGPSSG 126
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 65.8 bits (159), Expect = 1e-12
Identities = 26/201 (12%), Positives = 57/201 (28%), Gaps = 13/201 (6%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P+ + N + + W+ L + + +
Sbjct: 206 ELPPPENIEVSVQNQNYV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENV 264
Query: 62 TRNWA-LIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPT 120
+ Y ++V A + SE T +A PP +I+ ++
Sbjct: 265 KTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPV-FNIRSLS-D 322
Query: 121 TVHVTWRY----VSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG 176
+ H+ + ++ + Y++ WE + R D + +L P
Sbjct: 323 SFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIE-----KKTDVTVPNLKPL 377
Query: 177 KRYHMRVLAFSNGGDGRMSSP 197
Y ++ A + SS
Sbjct: 378 TVYCVKARAHTMDEKLNKSSV 398
Score = 52.7 bits (125), Expect = 3e-08
Identities = 29/228 (12%), Positives = 55/228 (24%), Gaps = 16/228 (7%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+PQ V + I + WN + N+ Y K + T
Sbjct: 10 SPQKVEVDIIDDNFI-LRWNRSDESVGNVT-----FSFDYQKTGMDNWIKLSGCQNITST 63
Query: 65 W--ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTV 122
+ L + +++ A E +RKA PP +
Sbjct: 64 KCNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVI 122
Query: 123 HVTWRYVSPSFEEEP--IIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYH 180
H++ Y + +W+ + I LSP Y
Sbjct: 123 HISPGTKDSVMWALDGLSFTYSLVIWKNSSGV-----EERIENIYSRHKIYKLSPETTYC 177
Query: 181 MRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSPALYSASTTLLLVMS 228
++V A + + + + V+
Sbjct: 178 LKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLK 225
Score = 50.4 bits (119), Expect = 2e-07
Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 9/196 (4%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
P+ + I+++ + + + G + + WK + E +
Sbjct: 104 AQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERI----E 159
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAG--EGPESERYLERTYRKAPQKPPSAVHIKGIN 118
+ I L P+T Y +KV A G S + +T + PP + + N
Sbjct: 160 NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQN 219
Query: 119 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRAN--DTIIPVGNTLDADIVDLSPG 176
V + W Y + + + + + V T ++
Sbjct: 220 QNYV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQK 278
Query: 177 KRYHMRVLAFSNGGDG 192
Y +RV A
Sbjct: 279 GIYLLRVQASDGNNTS 294
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 63.8 bits (154), Expect = 3e-12
Identities = 35/210 (16%), Positives = 68/210 (32%), Gaps = 10/210 (4%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
P+ + I+++ + + + G + + WK + E +
Sbjct: 100 AQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERI----E 155
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAG--EGPESERYLERTYRKAPQKPPSAVHIKGIN 118
+ I L P+T Y +KV A G S + +T + PP + + N
Sbjct: 156 NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQN 215
Query: 119 PTTVHVTWRYVS--PSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG 176
+ W Y +F+ + + + R + V T ++
Sbjct: 216 -QNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQK 274
Query: 177 KRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
Y +RV A S+G + S I F +
Sbjct: 275 GIYLLRVQA-SDGNNTSFWSEEIKFDTEIQ 303
Score = 53.0 bits (126), Expect = 1e-08
Identities = 32/227 (14%), Positives = 61/227 (26%), Gaps = 18/227 (7%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+PQ V + I + WN + N+ Y K + T
Sbjct: 6 SPQKVEVDIIDDNFI-LRWNRSDESVGNVT-----FSFDYQKTGMDNWIKLSGCQNITST 59
Query: 65 WA--LIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTV 122
+ L + +++ A E +RKA PP +
Sbjct: 60 KCNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVI 118
Query: 123 HVT--WRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYH 180
H++ + + Y + +W+ + + I LSP Y
Sbjct: 119 HISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIEN-----IYSRHKIYKLSPETTYC 173
Query: 181 MRVLAFSNGGD--GRMSSPAITFQMGEEKEFKSGSPALYSASTTLLL 225
++V A G S E + + + + +L
Sbjct: 174 LKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVL 220
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 59.7 bits (145), Expect = 4e-12
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + T++ ++W+ + +RI Y + + + ++
Sbjct: 7 VPTKLEVVAATPTSLLISWDASS-------SSVSYYRITYGETGGNSPVQEFTVPGSSST 59
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 102
A I GL P Y + V AY + + S YR
Sbjct: 60 -ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
Score = 56.6 bits (137), Expect = 6e-11
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
P+ + + PT++ ++W S + Y++ E + T+ G++
Sbjct: 7 VPTKLEVVAATPTSLLISW---DAS--SSSVSYYRITYGETGGNSPVQEFTV--PGSSST 59
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
A I LSPG Y + V A+ + D S +
Sbjct: 60 ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 59.6 bits (144), Expect = 1e-11
Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 12/141 (8%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWR-------YVSPSFEEEPIIG 140
G S + + I TV +TW + + G
Sbjct: 1 GSSGSSGDEETKAFEALLS-NIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59
Query: 141 YKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
Y+V + +D + VG + + DL P YH +V A N G S
Sbjct: 60 YEVLISSTGKD---GKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEA-EI 115
Query: 201 FQMGEEKEFKSGSPALYSAST 221
F + P + S+
Sbjct: 116 FTTLSCEPDIPNPPRISGPSS 136
Score = 50.4 bits (120), Expect = 2e-08
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 16 STAINVTWNPIELIRENIRGRLIGHRIKYWK---EDNPEETAVYYLSRTTRNWALIVGLQ 72
+ + +TW+P + + ++ ++ + + L+
Sbjct: 31 ARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLK 90
Query: 73 PDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPP 109
P Y+ KV A N+ +G SE + T P P
Sbjct: 91 PAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPN 127
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 62.3 bits (150), Expect = 1e-11
Identities = 23/201 (11%), Positives = 50/201 (24%), Gaps = 11/201 (5%)
Query: 15 NSTAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP 73
++++ W P L + + L
Sbjct: 112 TTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLL 171
Query: 74 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKP-----PSAVHIKGINPTTVHVTWRY 128
+ V A N G + L+ + P + + ++W
Sbjct: 172 YQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWE- 230
Query: 129 VSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN 188
++R + S A +P+ ++ L P Y +++
Sbjct: 231 -PWQPGLHINQKCELRHKPQRGEASWALVGPLPLEAL-QYELCGLLPATAYTLQIRCIRW 288
Query: 189 GGDGRMS--SPAITFQMGEEK 207
G S SP++ + E
Sbjct: 289 PLPGHWSDWSPSLELRTTERA 309
Score = 47.6 bits (112), Expect = 1e-06
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 4/95 (4%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
+ + ++W P + +++ + A+ + GL P
Sbjct: 221 QAGCLQLSWEP----WQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPA 276
Query: 75 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPP 109
T Y +++ G S+ R +
Sbjct: 277 TAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAA 311
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 57.8 bits (140), Expect = 3e-11
Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 9/110 (8%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P+ + + A V W + R+ Y +
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAP-------RPVRLVRVTYVSSEGGHSGQTEAPGNA 59
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
T A++ L T Y V+V G + +P PS+
Sbjct: 60 TS--AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGPSS 107
Score = 55.1 bits (133), Expect = 2e-10
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 8/97 (8%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 163
+ PP + ++ V W + P+ +V + S G
Sbjct: 6 SGLAPPRHLGFSDVSHDAARVFW---EGA--PRPVRLVRVTYVSSEGGHSG---QTEAPG 57
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
N A + LS Y +RV GG + +T
Sbjct: 58 NATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVT 94
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 57.4 bits (139), Expect = 4e-11
Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 10/107 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + R + I ++W P N + G+ I Y ET +
Sbjct: 20 QPSSLHVR-PQTNCIIMSWTPPL----NPNIVVRGYIIGYGVGSPYAETVRVDSKQRY-- 72
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
I L+ + Y + + A+NNAGEG Y T R P S
Sbjct: 73 -YSIERLESSSHYVISLKAFNNAGEGVPL--YESATTRSITSGPSSG 116
Score = 52.8 bits (127), Expect = 2e-09
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 12/115 (10%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINP--TTVHVTWRYVSPSFEEEPIIGYKVRV 145
G S + + P + P + ++W P + GY +
Sbjct: 1 GSSGSSGPENDLD----ESQVPDQPSSLHVRPQTNCIIMSWT--PPLNPNIVVRGYIIGY 54
Query: 146 WEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
+T+ I L Y + + AF+N G+G + T
Sbjct: 55 GVGSPYA----ETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESAT 105
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 56.6 bits (137), Expect = 5e-11
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
PP + + I TT VTW P PI G V + T+ +
Sbjct: 4 PPFNIKVTNITLTTAVVTW---QPP--ILPIEGILVTFGRKNDPSDET--TVDLTSSITS 56
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
+ +L P Y +R++A + S T
Sbjct: 57 LTLTNLEPNTTYEIRIVARNGQQYSPPVSTTFT 89
Score = 55.9 bits (135), Expect = 1e-10
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + T VTW P + G + + ++++P + L+ +
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPI-------LPIEGILVTFGRKNDPSDETTVDLTSSIT- 55
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
+ L+P+T Y ++++A N P
Sbjct: 56 SLTLTNLEPNTTYEIRIVARNGQQYSPPVS 85
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding,
phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A
1ttg_A 3rzw_A 1fna_A
Length = 101
Score = 56.7 bits (137), Expect = 5e-11
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + T++ ++W+ + +RI Y + + + ++
Sbjct: 7 VPTKLEVVAATPTSLLISWDA-----PMSSSSVYYYRITYGETGGNSPVQEFTVPYSSST 61
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
A I GL P Y + V A+ G
Sbjct: 62 -ATISGLSPGVDYTITVYAWGEDSAGYMFM 90
Score = 55.2 bits (133), Expect = 2e-10
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
P+ + + PT++ ++W + Y++ E + T+ ++
Sbjct: 7 VPTKLEVVAATPTSLLISW---DAPMSSSSVYYYRITYGETGGNSPVQEFTV--PYSSST 61
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
A I LSPG Y + V A+ G M
Sbjct: 62 ATISGLSPGVDYTITVYAWGEDSAGYMFMY 91
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 56.6 bits (137), Expect = 8e-11
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 6/118 (5%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWE 147
G S + T P P+ I ++ + W+ +PS I + + E
Sbjct: 1 GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWK--APSDNGSKIQNFVL---E 54
Query: 148 VDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGE 205
D+ +G+ I LSP R+ A ++ G S + + G
Sbjct: 55 WDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112
Score = 46.6 bits (111), Expect = 4e-07
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 9/107 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P ++ + W + ++ +++ + E Y+ +
Sbjct: 20 IPNPPRIANRTKNSLTLQWKA----PSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQ- 74
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
I L P ++ A N+ G SE E Y + PS+
Sbjct: 75 -FKITKLSPAMGCKFRLSARNDYGTSGFSE---EVLYYTSGCSGPSS 117
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 56.3 bits (136), Expect = 1e-10
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 16 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 75
+ + ++W G+ ++ + + VY + GL ++
Sbjct: 24 NNSATLSWKQ----PPLSTVPADGYILELDDGNGGQFREVY---VGKETMCTVDGLHFNS 76
Query: 76 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
Y +V A+N G P S+ + + PS+
Sbjct: 77 TYNARVKAFNKTGVSPYSK---TLVLQTSEGSGPSS 109
Score = 47.8 bits (114), Expect = 1e-07
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 163
P P + + + ++W+ P P GY + + + + R + VG
Sbjct: 9 VPATPILQLEECCTHNNSATLSWK--QPPLSTVPADGYILELDDGNGGQFRE----VYVG 62
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 198
+ L Y+ RV AF+ G S
Sbjct: 63 KETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL 97
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 56.2 bits (136), Expect = 1e-10
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP + + T +TW P + G + Y +D P + L+
Sbjct: 5 APSQIEVKDVTDTTALITWMPP-------SQPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPP 109
I L+PDT+Y V +++ ++ T A +
Sbjct: 58 -YSIGNLKPDTEYEVSLISRRGDMSSNPAKETF-TTGLAAALEHH 100
Score = 53.2 bits (128), Expect = 1e-09
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
PS + +K + TT +TW P +P+ G+++ D R TI +
Sbjct: 5 APSQIEVKDVTDTTALITW---MPP--SQPVDGFELTYGIKDVPGDRT--TIDLTEDENQ 57
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
I +L P Y + +++ + T
Sbjct: 58 YSIGNLKPDTEYEVSLISRRGDMSSNPAKETFT 90
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 57.9 bits (139), Expect = 3e-10
Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 16/200 (8%)
Query: 14 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP 73
FN +N TW + + K D ++ + Y S + + +
Sbjct: 48 FNVEYMNCTWQSSSE--PQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEI 105
Query: 74 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSF 133
V + ++ + L+ P P + + ++ + + + W +
Sbjct: 106 HLYQTFVVQLQDPREPRRQATQMLKLQNLVIP-WAPENLTLHKLSESQLELNWNNRFLNH 164
Query: 134 EEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV---LAFSNGG 190
+ + V+ T V + + KRY RV G
Sbjct: 165 ----CLEHLVQYRTDWDHSW----TEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGS 216
Query: 191 DGRMS--SPAITFQMGEEKE 208
S S I + KE
Sbjct: 217 AQHWSEWSHPIHWGSNTSKE 236
Score = 40.6 bits (94), Expect = 2e-04
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP+ + + + + + WN + H ++Y + + T S R+
Sbjct: 139 APENLTLHKLSESQLELNWNN------RFLNHCLEHLVQYRTDWDHSWTEQ---SVDYRH 189
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPE 92
+ + +Y +V + N G
Sbjct: 190 KFSLPSVDGQKRYTFRVRSRFNPLCGSA 217
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 55.0 bits (133), Expect = 3e-10
Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 11/96 (11%)
Query: 16 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 75
+T V W + + +R+ W Y + I GL P T
Sbjct: 21 ATCAQVNWEV----PLSNGTDVTEYRL-EWGGVEGSMQICYCGPGLS---YEIKGLSPAT 72
Query: 76 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
YY +V A + G GP SE P PS+
Sbjct: 73 TYYCRVQALSVVGAGPFSE---VVACVTPPSSGPSS 105
Score = 53.1 bits (128), Expect = 1e-09
Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
+ + T V W P + Y++ V+ M I G L
Sbjct: 10 QCKPPQVTCRSATCAQVNWE--VPLSNGTDVTEYRLEWGGVEGSM-----QICYCGPGLS 62
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
+I LSP Y+ RV A S G G S
Sbjct: 63 YEIKGLSPATTYYCRVQALSVVGAGPFSEV 92
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 55.3 bits (133), Expect = 3e-10
Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 12/125 (9%)
Query: 76 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEE 135
++ Y + + E+ ++ + P+ + + PT++ ++W
Sbjct: 4 HHHHHSSDYKDDDDKGENL-----YFQGSVSDVPTKLEVVAATPTSLLISW---DAP--A 53
Query: 136 EPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS 195
+ Y++ E + T+ G+ A I L PG Y + V A +
Sbjct: 54 VTVRYYRITYGETGGNSPVQEFTV--PGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111
Query: 196 SPAIT 200
S I+
Sbjct: 112 SKPIS 116
Score = 51.4 bits (123), Expect = 7e-09
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + T++ ++W+ + +RI Y + + + +
Sbjct: 31 VPTKLEVVAATPTSLLISWDAPA-------VTVRYYRITYGETGGNSPVQEFTVPGSKST 83
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 102
A I GL+P Y + V A + + YR
Sbjct: 84 -ATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 55.4 bits (134), Expect = 3e-10
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 8/124 (6%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVW 146
G S + P PP+ + I I P +V + + P ++ + I + V
Sbjct: 1 GSSGSSGTISSGVPPELPG-PPTNLGISNIGPRSVTLQF---RPGYDGKTSISRWLVEAQ 56
Query: 147 EVDQDMSRANDTIIPV---GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 203
I + + ++ DL+P Y R+ + G S P+ Q
Sbjct: 57 VGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQT 116
Query: 204 GEEK 207
+
Sbjct: 117 LQSG 120
Score = 41.2 bits (97), Expect = 3e-05
Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 2/107 (1%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + ++ + + P + +I L+ ++ E +
Sbjct: 20 PPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDAR 79
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ L P T Y ++ N G P S+ R + P S
Sbjct: 80 SMEVPDLNPFTCYSFRMRQVNIVGTSPPSQ--PSRKIQTLQSGPSSG 124
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 54.7 bits (132), Expect = 5e-10
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 5/120 (4%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVW 146
G S + R +P + P I + T+V+VTW P PI ++V
Sbjct: 1 GSSGSSGSQPDHG-RLSPPEAPDRPTISTASETSVYVTW---IPRGNGGFPIQSFRVEYK 56
Query: 147 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
++ + T + L +I L G Y RV A + G+ S+P+ + +
Sbjct: 57 KLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116
Score = 36.2 bits (84), Expect = 0.002
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE-TAVYYLSRTTRNWALIVGLQP 73
+ T++ VTW P R N + R++Y K + +R I GL+
Sbjct: 30 SETSVYVTWIP----RGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEK 85
Query: 74 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
Y +V A N GE S R Y + P S
Sbjct: 86 GISYKFRVRALNMLGESEPSA--PSRPYVVSGSGPSSG 121
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 57.7 bits (138), Expect = 5e-10
Identities = 23/200 (11%), Positives = 48/200 (24%), Gaps = 12/200 (6%)
Query: 3 QVAPQGVFSRGFNSTAINVTWNP--IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
Q + +TW+ + + + Y + + E A LS
Sbjct: 108 QPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSN 167
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESE-----RYLERTYRKAPQKPPSAVHIK 115
T++ L P + Y +V G + + + P +
Sbjct: 168 TSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECF 227
Query: 116 GINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSP 175
+ +W E + + + S L S
Sbjct: 228 FDGAAVLSCSW---EVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREG--LGSL 282
Query: 176 GKRYHMRVLAFSNGGDGRMS 195
R+H ++ G+
Sbjct: 283 HTRHHCQIPVPDPATHGQYI 302
Score = 49.2 bits (116), Expect = 4e-07
Identities = 22/199 (11%), Positives = 52/199 (26%), Gaps = 22/199 (11%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
+ ++ +W + + Y + V
Sbjct: 230 GAAVLSCSWEV-----RKEVASSVSFGLFYKPSPDAGSA-VLLREEECSPVLREGLGSLH 283
Query: 75 TKYYVKVMAYNNAGEG-------PESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWR 127
T+++ ++ + A G P ++ PPS K + + + W
Sbjct: 284 TRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTK--DGDSYSLRWE 341
Query: 128 YVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS 187
E ++++ + + + N + L P RY RV +
Sbjct: 342 -TMKMRYEHIDHTFEIQYRKDTATWKDSK--TETLQNAHSMALPALEPSTRYWARVRVRT 398
Query: 188 NGGDGRMS----SPAITFQ 202
+ S A ++
Sbjct: 399 SRTGYNGIWSEWSEARSWD 417
Score = 47.7 bits (112), Expect = 1e-06
Identities = 28/214 (13%), Positives = 55/214 (25%), Gaps = 19/214 (8%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
+ Q + ++ I W + RL+ + ++ E LS
Sbjct: 2 ETIPLQTLRCYNDYTSHITCRWADTQD-----AQRLVNVTLIRRVNEDLLEPVSCDLSDD 56
Query: 62 TRN-------WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ-KPPSAVH 113
+ P + V + Y + L T + Q P +
Sbjct: 57 MPWSACPHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQ 116
Query: 114 IKGINPTTVHVTWRYVSPSFEEEPI----IGYKVRVWEVDQDMSRANDTIIPVGNTLDAD 169
I + +TW S + + + ++V + A ++ +
Sbjct: 117 IS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDA-AILLSNTSQATLG 174
Query: 170 IVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQM 203
L P Y RV G P+
Sbjct: 175 PEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPE 208
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 55.9 bits (134), Expect = 7e-10
Identities = 37/211 (17%), Positives = 59/211 (27%), Gaps = 12/211 (5%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR 60
+P P+ R N W P L E E Y
Sbjct: 2 LPPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSL---TYHREGETLMHECPDYITGG 58
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR---KAPQKPPSAVHIKGI 117
Y + V A N G E Y++ TY P + V
Sbjct: 59 PNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPED 118
Query: 118 NPTTVHVTWRY--VSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSP 175
+ + W + + Y++R+ I G + I+ L P
Sbjct: 119 RKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAA----EWEIHFAGQQTEFKILSLHP 174
Query: 176 GKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
G++Y ++V + G SPA Q+ +
Sbjct: 175 GQKYLVQVRCKPDHGYWSAWSPATFIQIPSD 205
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 55.6 bits (133), Expect = 1e-09
Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 14/216 (6%)
Query: 1 MPQVAPQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 59
P +P + + ++ W P L R + + +
Sbjct: 3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 60 RTTRN-WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIK--- 115
+ N L + V A N G + L+ + PP +
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLE-PPMLQALDIGP 121
Query: 116 ---GINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVD 172
P + ++W+ E ++R + + +P + ++
Sbjct: 122 DVVSHQPGCLWLSWKP--WKPSEYMEQECELRYQPQLKGANWTLVFHLP-SSKDQFELCG 178
Query: 173 LSPGKRYHMRVLAFSNGGDGRMS--SPAITFQMGEE 206
L Y +++ + G S SP + + +
Sbjct: 179 LHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMK 214
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 52.4 bits (126), Expect = 2e-09
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
P + ++ ++ + W + Y+V + + P G
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQG-----QVSRYRVTYSSPEDGIHEL--FPAPDGEEDT 56
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
A++ L PG Y + V+A + + S P I
Sbjct: 57 AELQGLRPGSEYTVSVVALHDDME---SQPLIG 86
Score = 52.0 bits (125), Expect = 3e-09
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P+G+ + +I + W + G++ +R+ Y ++
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQ-------GQVSRYRVTYSSPEDGIHELFPAPDGEEDT 56
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGP 91
A + GL+P ++Y V V+A ++ E
Sbjct: 57 -AELQGLRPGSEYTVSVVALHDDMESQ 82
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 52.8 bits (127), Expect = 2e-09
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 9/93 (9%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
P + K + P T +TW GY + I+ G
Sbjct: 10 APRDLEAKEVTPRTALLTWTEPPV-----RPAGYLLSFHTPGGQTQ----EILLPGGITS 60
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
++ L P Y+ R+ A S + T
Sbjct: 61 HQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFT 93
Score = 47.8 bits (114), Expect = 1e-07
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 10/90 (11%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP+ + ++ +TW R G+ + + + + T+
Sbjct: 10 APRDLEAKEVTPRTALLTWTEP-------PVRPAGYLLSFHTPGGQTQEILLPGGITS-- 60
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
++GL P T Y ++ A P
Sbjct: 61 -HQLLGLFPSTSYNARLQAMWGQSLLPPVS 89
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 54.8 bits (131), Expect = 2e-09
Identities = 28/200 (14%), Positives = 56/200 (28%), Gaps = 16/200 (8%)
Query: 14 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQP 73
FN +N TW + + K D ++ + Y S + + +
Sbjct: 10 FNVEYMNCTWQSSSE--PQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEI 67
Query: 74 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSF 133
V + ++ + L+ P P + + ++ + + + W +
Sbjct: 68 HLYQTFVVQLQDPREPRRQATQMLKLQNLVIP-WAPENLTLHKLSESQLELNWNNRFLNH 126
Query: 134 EEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV---LAFSNGG 190
+ + V+ T V + + KRY RV G
Sbjct: 127 ----CLEHLVQYRTDWDHSW----TEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGS 178
Query: 191 DGRMS--SPAITFQMGEEKE 208
S S I + KE
Sbjct: 179 AQHWSEWSHPIHWGSNTSKE 198
Score = 38.6 bits (89), Expect = 6e-04
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP+ + + + + + WN + H ++Y + + T S R+
Sbjct: 101 APENLTLHKLSESQLELNWNN------RFLNHCLEHLVQYRTDWDHSWTEQ---SVDYRH 151
Query: 65 WALIVGLQPDTKYYVKV 81
+ + +Y +V
Sbjct: 152 KFSLPSVDGQKRYTFRV 168
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 52.4 bits (126), Expect = 2e-09
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 16 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 75
+ W+P + + G L+G+R++Y + D + + + GL T
Sbjct: 20 MNTALLQWHP----PKELPGELLGYRLQYCRADEARPNTIDFGKDDQH--FTVTGLHKGT 73
Query: 76 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 110
Y ++ A N AG G E E+ + RT P S
Sbjct: 74 TYIFRLAAKNRAGLGEEFEKEI-RTPEDLS-GPSS 106
Score = 49.3 bits (118), Expect = 3e-08
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 100 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 159
+ P +P + I T + W P ++GY+++ D+ TI
Sbjct: 3 SGSSGPGRPT--MMISTTAMNTALLQWH--PPKELPGELLGYRLQYCRADEARPN---TI 55
Query: 160 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
+ + L G Y R+ A + G G I
Sbjct: 56 DFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIR 96
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 52.1 bits (125), Expect = 3e-09
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 12/107 (11%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + ++ V+W P GR++ + + Y + +
Sbjct: 10 PPSNLALASETPDSLQVSWTPPL-------GRVLHYWLTYAPASGLGPEKSVSVPGARSH 62
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ LQ TKY V V A AG T + A PS+
Sbjct: 63 -VTLPDLQAATKYRVLVSAIYAAGRSEAV----SATGQTACPSGPSS 104
Score = 50.9 bits (122), Expect = 9e-09
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 163
+ + PPS + + P ++ V+W +P ++ Y + +P G
Sbjct: 6 SGRSPPSNLALASETPDSLQVSW---TPP--LGRVLHYWLTYAPASGL-GPEKSVSVP-G 58
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 196
+ DL +Y + V A G S
Sbjct: 59 ARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVS 91
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 52.1 bits (125), Expect = 5e-09
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 2/105 (1%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVD-QDMSRANDTIIP 161
+ PS+ I + P + ++ P PI+ YK V +
Sbjct: 3 SGSSGPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 62
Query: 162 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
IV L P Y +R+ A + G G +S+ +
Sbjct: 63 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVR 107
Score = 46.3 bits (110), Expect = 6e-07
Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 24/116 (20%)
Query: 16 STAINVTWN--------PIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR--TTRNW 65
S+ V ++ PI + ++ ++ + +Y ++ +
Sbjct: 20 SSTAQVQFDEPEATGGVPI-----------LKYKAEWRAVGEEVWHSKWYDAKEASMEGI 68
Query: 66 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 121
IVGL+P+T Y V++ A N G G S ++ P + PSA ++G P++
Sbjct: 69 VTIVGLKPETTYAVRLAALNGKGLGEISA---ASEFKTQPVREPSAPKLEGSGPSS 121
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 51.5 bits (124), Expect = 5e-09
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 163
+ KPP + + T+V +TW + P+ Y ++ + +
Sbjct: 6 SGPKPPIDLVVTETTATSVTLTWDSGNSE----PVTYYGIQYRAAGTEGPFQEVDGVA-- 59
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
T I LSP Y RVLA ++ G G S
Sbjct: 60 -TTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEA 92
Score = 47.3 bits (113), Expect = 2e-07
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 11/107 (10%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + +T++ +TW+ + + I+Y TTR
Sbjct: 10 PPIDLVVTETTATSVTLTWDS------GNSEPVTYYGIQYRAAGTEGPFQEVDGVATTR- 62
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
I GL P ++Y +V+A N+ G GP SE R Q PS+
Sbjct: 63 -YSIGGLSPFSEYAFRVLAVNSIGRGPPSE---AVRARTGEQSGPSS 105
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus
design, S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 51.3 bits (123), Expect = 5e-09
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP + T+I V+W P + G+RI Y + P E + ++ +
Sbjct: 4 APTDLQVTNVTDTSITVSWTPP-------SATITGYRITYTPSNGPGEPKELTVPPSSTS 56
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
I GL P +Y V V A + E P
Sbjct: 57 -VTITGLTPGVEYVVSVYALKDNQESPPLV 85
Score = 47.8 bits (114), Expect = 9e-08
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
P+ + + + T++ V+W +P I GY++ + T+ ++
Sbjct: 4 APTDLQVTNVTDTSITVSW---TPP--SATITGYRITYTPSNGPGEPKELTV--PPSSTS 56
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
I L+PG Y + V A + + T
Sbjct: 57 VTITGLTPGVEYVVSVYALKDNQESPPLVGTQT 89
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 54.1 bits (129), Expect = 7e-09
Identities = 34/221 (15%), Positives = 68/221 (30%), Gaps = 30/221 (13%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P+ A + N + + +W P + + YW + + R
Sbjct: 97 PESAVTELQCIWHNLSYMKCSWLP-----GRNTSPDTNYTLYYWHRSLEKIHQCENIFRE 151
Query: 62 TRNWALIVGLQPD-----TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKG 116
+ + L ++ V++M +NAG+ S + T R P PP ++
Sbjct: 152 GQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKP-DPPHIKNLS- 209
Query: 117 INPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVD----------QDMSRANDTIIPVGNTL 166
+ ++V W +P + Y+V V + + V NT
Sbjct: 210 FHNDDLYVQWE--NPQNFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTS 267
Query: 167 DADIVDLSPGKRYHMRVLA----FSNGGDGRMS--SPAITF 201
+ + P +R+ D S S ++
Sbjct: 268 CFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSI 308
Score = 49.1 bits (116), Expect = 3e-07
Identities = 34/196 (17%), Positives = 59/196 (30%), Gaps = 22/196 (11%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
N + TWNP E N + + + + + + T R+ + V L
Sbjct: 16 NLCTVIWTWNPPEGASSNCS---LWYFSHFGDKQDKKIA-----PETRRS--IEVPLNER 65
Query: 75 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHI---KGINPTTVHVTWRYVSP 131
V N E P +E+ P SAV N + + +W P
Sbjct: 66 ICLQVGSQCSTNESEKPSI--LVEKCISPPEGDPESAVTELQCIWHNLSYMKCSW---LP 120
Query: 132 SFEEEPIIGYKVRVW----EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFS 187
P Y + W E G + D V S +++ ++++
Sbjct: 121 GRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKD 180
Query: 188 NGGDGRMSSPAITFQM 203
N G + S +
Sbjct: 181 NAGKIKPSFNIVPLTS 196
Score = 41.0 bits (95), Expect = 2e-04
Identities = 12/98 (12%), Positives = 22/98 (22%), Gaps = 9/98 (9%)
Query: 105 PQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGN 164
Q P + + + N TV TW + Y +
Sbjct: 3 TQPPVTNLSVSVENLCTVIWTWN-PPEGASSNCSLWYFSHFGDKQDKKI--------APE 53
Query: 165 TLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQ 202
T + V L+ + +N +
Sbjct: 54 TRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCIS 91
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 50.8 bits (122), Expect = 1e-08
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMS-RANDTIIPVGNTL 166
PPS + + +V ++W+ + P Y + + S + + T
Sbjct: 18 PPSKPQVTDVTKNSVTLSWQ--PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVK---TT 72
Query: 167 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 207
+ L P Y V A + G S + + +
Sbjct: 73 LYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSG 113
Score = 38.5 bits (90), Expect = 3e-04
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 9/108 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE-TAVYYLSRTTR 63
P ++ ++W P + I+ + + V +TT
Sbjct: 18 PPSKPQVTDVTKNSVTLSWQP----GTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTL 73
Query: 64 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ GL+P+T Y V A N G S + R P S
Sbjct: 74 --YTVRGLRPNTIYLFMVRAINPQGLSDPSP--MSDPVRTQDSGPSSG 117
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 50.6 bits (121), Expect = 1e-08
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 163
P PP A+ + + P TVH+TW+ Y VR + + VG
Sbjct: 7 GPLPPPRALTLAAVTPRTVHLTWQ------PSAGATHYLVRCSPASPK-GEEEEREVQVG 59
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSS 196
+ + L PG+ Y + V +
Sbjct: 60 RP-EVLLDGLEPGRDYEVSVQSLRGPEGSEARG 91
Score = 48.7 bits (116), Expect = 5e-08
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 10/105 (9%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
P P+ + +++TW P + ++ E +
Sbjct: 8 PLPPPRALTLAAVTPRTVHLTWQPSAGAT--------HYLVRCSPASPKGEEEEREVQ-V 58
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQ 106
R L+ GL+P Y V V + E+ RT P
Sbjct: 59 GRPEVLLDGLEPGRDYEVSVQSLRGPEGS-EARGIRARTPTSGPS 102
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 50.5 bits (121), Expect = 1e-08
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 9/93 (9%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
P+ + + + W P + P+ Y ++V G+ +D
Sbjct: 10 GPTQLRALNLTEGFAVLHW---KPP--QNPVDTYDIQVTAPGAP----PLQAETPGSAVD 60
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
+ DL Y V +S T
Sbjct: 61 YPLHDLVLHTNYTATVRGLRGPNLTSPASITFT 93
Score = 47.4 bits (113), Expect = 2e-07
Identities = 14/118 (11%), Positives = 27/118 (22%), Gaps = 15/118 (12%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + + + W P + + + I+ P A S
Sbjct: 10 GPTQLRALNLTEGFAVLHWKPP-------QNPVDTYDIQVTAPGAPPLQAETPGSAVD-- 60
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTV 122
+ L T Y V + + P + K + P+
Sbjct: 61 -YPLHDLVLHTNYTATVRGLRGPNLTSPAS-----ITFTTGLEAPRDLEAKEVTPSGP 112
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 50.5 bits (121), Expect = 2e-08
Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVW 146
G S T P P I+ + +TW P I Y V
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWD--PPKDNGGATINKYVV--- 55
Query: 147 EVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
E+ + + +I G T + L+PG Y +RV S+GG +S
Sbjct: 56 EMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSES 106
Score = 40.1 bits (94), Expect = 8e-05
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
+S + +TW+P + +N + + ++ + N + + Y T L L P
Sbjct: 31 HSHSFKITWDPPK---DNGGATINKYVVEMAEGSNGNKWEMIYSGATRE--HLCDRLNPG 85
Query: 75 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 110
Y ++V ++ G+ SE L +T + P S
Sbjct: 86 CFYRLRVYCISDGGQSAVSESLLVQTPAVSG--PSS 119
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 52.8 bits (127), Expect = 2e-08
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 11/130 (8%)
Query: 80 KVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPI 138
V A N G ++ +E P PP V + ++ +V++TW P+ + I
Sbjct: 177 VVCAKNRFGI---DQKTVELDVADVPD-PPRGVKVSDVSRDSVNLTWT--EPASDGGSKI 230
Query: 139 IGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 198
Y V + +++L Y RV+A + G + S P+
Sbjct: 231 TNYIVEKCATTAERWLRVGQA----RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPS 286
Query: 199 ITFQMGEEKE 208
E+K
Sbjct: 287 EPTITKEDKT 296
Score = 37.8 bits (88), Expect = 0.002
Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P+GV + ++N+TW + ++ + ++ V +
Sbjct: 201 PPRGVKVSDVSRDSVNLTWTEP---ASDGGSKITNYIVEKCATTAERWLRV---GQARET 254
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEG---PESERYLERTYRKAPQKPPSAVHI 114
++ L T Y +V+A N G SE + A++
Sbjct: 255 RYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPT------ITKEDKTRAMNY 301
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 49.5 bits (118), Expect = 3e-08
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P+ + T++ ++W+ G +RI Y + + +
Sbjct: 6 VPRDLEVVAATPTSLLISWDSGR-------GSYQYYRITYGETGGNSPVQEFTVPGPVHT 58
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 100
A I GL+P Y + V A + + +
Sbjct: 59 -ATISGLKPGVDYTITVYAVTDHKPHADGPHTYHES 93
Score = 47.2 bits (112), Expect = 2e-07
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
P + + PT++ ++W Y++ E + S + +P G
Sbjct: 6 VPRDLEVVAATPTSLLISW---DSG--RGSYQYYRITYGETGGN-SPVQEFTVP-GPVHT 58
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAI 199
A I L PG Y + V A ++
Sbjct: 59 ATISGLKPGVDYTITVYAVTDHKPHADGPHTY 90
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 51.3 bits (122), Expect = 3e-08
Identities = 25/196 (12%), Positives = 48/196 (24%), Gaps = 26/196 (13%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P+ V N I + W + + +Y ++ +TT
Sbjct: 4 PPENVRMNSVNFKNI-LQWESPAFAKGQLT-----FTAQYLSYRIFQDKC----MQTTLT 53
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
L + ++V A + P V + +H+
Sbjct: 54 ECDFSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVL---ADCLHM 110
Query: 125 TWRYVSPSFEEE--------PIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPG 176
+ E E Y V+ W+ D + +L P
Sbjct: 111 RFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITP-----QYDFEVLRNLEPW 165
Query: 177 KRYHMRVLAFSNGGDG 192
Y ++V F +
Sbjct: 166 TTYCVQVRGFLPDRNK 181
Score = 37.4 bits (86), Expect = 0.002
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
+ + IE E + + + Y + + T + ++ ++ L+P
Sbjct: 106 DCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPW 165
Query: 75 TKYYVKVMAYNNA--GEGPESERYLERT 100
T Y V+V + G SE E+T
Sbjct: 166 TTYCVQVRGFLPDRNKAGEWSEPVCEQT 193
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 49.3 bits (118), Expect = 4e-08
Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPV 162
AP+ P + + +++TW + F+ P+I Y + + E + + ++
Sbjct: 20 APEHPV--ATLSTVERRAINLTW---TKPFDGNSPLIRYILEMSENNAPWTVLLASV--D 72
Query: 163 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEE 206
+ L P + Y R+ A ++ G G+ S + E
Sbjct: 73 PKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES 116
Score = 43.1 bits (102), Expect = 8e-06
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 5 APQGVFSRGFN--STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 62
AP+ + AIN+TW + LI + ++ + + P + +
Sbjct: 20 APEHPVATLSTVERRAINLTWTK----PFDGNSPLIRYILEMSENNAPWTVLLASVD-PK 74
Query: 63 RNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ GL P Y ++ A N+ G+G S+ + P+ PS+
Sbjct: 75 ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSK---DTERVSLPESGPSS 120
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 50.9 bits (121), Expect = 5e-08
Identities = 28/214 (13%), Positives = 52/214 (24%), Gaps = 24/214 (11%)
Query: 1 MPQVAPQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA---- 54
+ P+ + F+ + W + + Y ED P +
Sbjct: 19 LAARGPEELLCFTERLED--LVCFWEE----AASAGVGPGQYSFSYQLEDEPWKLCRLHQ 72
Query: 55 VYYLSRTTRNWALI--VGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAV 112
R W + ++V A + A R + P V
Sbjct: 73 APTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPR---YHRVIHINEVVLLDAPVGLV 129
Query: 113 HIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVD 172
V + W P I Y+V V + + + + + + +
Sbjct: 130 ARLADESGHVVLRWLP-PPETPMTSHIRYEVDVSAGQG--AGSVQRVEILEGRTECVLSN 186
Query: 173 LSPGKRYHMRVLAFSNGGDGRMS----SPAITFQ 202
L RY V A S ++
Sbjct: 187 LRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLL 220
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 47.8 bits (114), Expect = 8e-08
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP+ + ++ ++W + I+Y + + E + + R+
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPD-------AAFDSFMIQYQESEKVGEAINLTVPGSERS 56
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
+ GL+P T+Y V +
Sbjct: 57 -YDLTGLKPGTEYTVSIYGVKGGHRSNPLS 85
Score = 47.4 bits (113), Expect = 1e-07
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
P + + + ++ ++W + ++ E ++ N T+ G+
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPD-----AAFDSFMIQYQESEKVGEAINLTV--PGSERS 56
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSS 196
D+ L PG Y + + G S
Sbjct: 57 YDLTGLKPGTEYTVSIYGVKGGHRSNPLS 85
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 48.5 bits (116), Expect = 9e-08
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 5/101 (4%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 166
PP + + +V ++W +P + PI + + + V T
Sbjct: 19 PPFDLELTDQLDKSVQLSW---TPGDDNNSPITKFIIEYED-AMHKPGLWHHQTEVSGTQ 74
Query: 167 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEK 207
++LSP Y RV+A ++ G S + + +
Sbjct: 75 TTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASE 115
Score = 45.1 bits (107), Expect = 2e-06
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 9/115 (7%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P + ++ ++W P ++ + I+Y + + +
Sbjct: 19 PPFDLELTDQLDKSVQLSWTP----GDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQ 74
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGP---ESERYLERTYRKAPQKPPSAVHIKG 116
+ L P Y +VMA N+ G+ SE+Y T P K P++ G
Sbjct: 75 TTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQY--LTKASEPDKNPTSGPSSG 127
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 49.7 bits (118), Expect = 1e-07
Identities = 20/161 (12%), Positives = 45/161 (27%), Gaps = 8/161 (4%)
Query: 43 KYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYR 102
E YL + + + Y + + ++ G +S
Sbjct: 48 DIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSL-DSPPTCVLPDS 106
Query: 103 KAPQKPPSAVHIKGI-NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP 161
PPS+V + N + ++W E + +++R +++ +
Sbjct: 107 VVKPLPPSSVKAEITINIGLLKISW---EKPVFPENNLQFQIRYGLSGKEVQWKMYEVYD 163
Query: 162 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAIT 200
+ + Y ++V G G S S
Sbjct: 164 -AKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAY 203
Score = 48.5 bits (115), Expect = 3e-07
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
N + ++W N++ +I+Y + +Y + +
Sbjct: 123 NIGLLKISWEKPVFPENNLQ-----FQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLC 177
Query: 75 TKYYVKVMAYNNAGEGPESE 94
Y V+V G G S
Sbjct: 178 AVYAVQVRCKRLDGLGYWSN 197
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 49.4 bits (117), Expect = 2e-07
Identities = 29/200 (14%), Positives = 57/200 (28%), Gaps = 23/200 (11%)
Query: 5 APQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 62
PQ V SR F++ + W P + G + ++Y + T
Sbjct: 10 KPQRVQFQSRNFHNI---LQWQPGR----ALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQ 62
Query: 63 RNWALI--VGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPT 120
+ YY +V A + S + + PP +
Sbjct: 63 ELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSL 122
Query: 121 TVHVTW--------RYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVD 172
V + + + S E+ + Y+V + + + + G +I
Sbjct: 123 LVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLE----KEQKVYEGAHRAVEIEA 178
Query: 173 LSPGKRYHMRVLAFSNGGDG 192
L+P Y + + D
Sbjct: 179 LTPHSSYCVVAEIYQPMLDR 198
Score = 41.7 bits (97), Expect = 6e-05
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 11/97 (11%)
Query: 6 PQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGH------RIKYWKEDNPEETAVYYLS 59
P ++ S + + + + + I R+ +E VY
Sbjct: 111 PVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVY--- 167
Query: 60 RTTRNWALIVGLQPDTKYYVKVMAYNNA--GEGPESE 94
I L P + Y V Y SE
Sbjct: 168 EGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSE 204
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 49.3 bits (117), Expect = 2e-07
Identities = 25/170 (14%), Positives = 48/170 (28%), Gaps = 12/170 (7%)
Query: 40 HRIKYWKEDNPEETAVYYLSRTTRN---WALIVG-LQPDTKYYVKVMAYNNAGEGPESER 95
R+ Y E L++ + Y + + A
Sbjct: 33 LRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLW---KGS 89
Query: 96 YLERTYRKAPQKPPSAVHIKGINPTTVHVTWRY-VSPSFEEEPIIGYKVRVWEVDQDMSR 154
+ + K P + + T+ +TW P + Y V +W +
Sbjct: 90 FKPSEHVKPR--APGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADF 147
Query: 155 ANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMS--SPAITFQ 202
+ + +L L G Y RV A++ + S SP+ +
Sbjct: 148 RIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWH 197
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 47.3 bits (113), Expect = 2e-07
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRANDTIIP 161
+ PP+ + + + TTV + WR P + GY + + AN +I
Sbjct: 6 SGTSPPTLLTVDSVTDTTVTMRWR--PPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLID 63
Query: 162 VGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
I L + +RV A + G
Sbjct: 64 ---KTKFTITGLPTDAKIFVRVKAVNAAGASEPKYY 96
Score = 41.6 bits (98), Expect = 2e-05
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 8/111 (7%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPE-ETAVYYLSR 60
P + T + + W P + L G+ ++Y E + A L
Sbjct: 7 GTSPPTLLTVDSVTDTTVTMRWRPPD---HIGAAGLDGYVLEYCFEGTEDWIVANKDLID 63
Query: 61 TTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
T+ I GL D K +V+V A N AG + P S
Sbjct: 64 KTK--FTITGLPTDAKIFVRVKAVNAAGASEPKY--YSQPILVKESGPSSG 110
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 48.9 bits (116), Expect = 2e-07
Identities = 26/194 (13%), Positives = 53/194 (27%), Gaps = 22/194 (11%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA-----VYYLS 59
APQ + N + + W+P+ E + + ++Y E T+ + S
Sbjct: 9 APQQLSVLSTNMKHL-LMWSPVIAPGETV-----YYSVEYQGEYESLYTSHIWIPSSWCS 62
Query: 60 RTTRNW-ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 118
T + + Y ++V A + S + P I
Sbjct: 63 LTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPG----MEIT 118
Query: 119 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKR 178
H+ P + V W ++ + + + + PG
Sbjct: 119 KDGFHLVIELEDL----GPQFEFLVAYWR--REPGAEEHVKMVRSGGIPVHLETMEPGAA 172
Query: 179 YHMRVLAFSNGGDG 192
Y ++ F
Sbjct: 173 YCVKAQTFVKAIGR 186
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 46.9 bits (112), Expect = 2e-07
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 99 RTYRKAPQKPPSAVHIKG-INPTTVHVTWRYVSPSFEEE-PIIGYKVRVWEVDQDMSRAN 156
+ P P ++G + + W P + PI Y V + +++D
Sbjct: 2 SSGSSGPPGPCLPPRLQGRPKAKEIQLRWG--PPLVDGGSPISCYSVEMSPIEKDEP--- 56
Query: 157 DTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
+ G+ ++ + L PGK Y R+ A + G G S
Sbjct: 57 -REVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEK 96
Score = 45.0 bits (107), Expect = 1e-06
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 11/97 (11%)
Query: 16 STAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
+ I + W P G I + ++ + E VY S + L P
Sbjct: 23 AKEIQLRWGP----PLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVE---CTVSSLLPG 75
Query: 75 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
Y ++ A N G GP SE + AP PS+
Sbjct: 76 KTYSFRLRAANKMGFGPFSE---KCDITTAPGSGPSS 109
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 49.1 bits (117), Expect = 2e-07
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 105 PQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRANDTIIPV 162
PS ++ +T V + P PI+ YK V +++
Sbjct: 113 TPSSPSIDQVE-PYSSTAQVQFD--EPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 169
Query: 163 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
IV L P Y +R+ A + G G +S+
Sbjct: 170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 204
Score = 42.1 bits (99), Expect = 4e-05
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 16 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYY--LSRTTRNWALIVGLQP 73
S+ V ++ E ++ ++ ++ + +Y + IVGL+P
Sbjct: 126 SSTAQVQFDEPE---ATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKP 182
Query: 74 DTKYYVKVMAYNNAGEGPESE 94
+T Y V++ A N G G S
Sbjct: 183 ETTYAVRLAALNGKGLGEISA 203
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 46.7 bits (111), Expect = 2e-07
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
++ + I ++ V+W VS S + + G++V ++ + +
Sbjct: 8 VATSESVTEITASSFVVSW--VSAS---DTVSGFRVEYELSEEGDEPQYLDLPSTATS-- 60
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
+I DL PG++Y + V S G+ S ++
Sbjct: 61 VNIPDLLPGRKYIVNVYQISEDGE---QSLILS 90
Score = 46.3 bits (110), Expect = 3e-07
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 9/99 (9%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRT 61
VA + +++ V+W + G R++Y + +E L T
Sbjct: 6 HLVATSESVT-EITASSFVVSWVSAS-------DTVSGFRVEYELSEEGDEPQYLDLPST 57
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERT 100
I L P KY V V + GE + T
Sbjct: 58 A-TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 48.6 bits (115), Expect = 3e-07
Identities = 26/200 (13%), Positives = 62/200 (31%), Gaps = 19/200 (9%)
Query: 14 FNSTAINVTWNPIELIRENIRGRLIGHRIKYW--KEDNPEETAVYYLSRTTRNWALIVGL 71
+ I+ W+ + ++ W + + + +S+ + LI+G
Sbjct: 13 NSRAQISCVWSQDGA------LQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILG- 65
Query: 72 QPDTKYYVKVMAYN---NAGEGPESERYLERTYRKAPQ---KPPSAVHIKGINPTTVHVT 125
PD++ V EG + ++ P ++ + + +++
Sbjct: 66 APDSQKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNIS 125
Query: 126 WRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLA 185
W S E + ++ R A + + L+P +Y +V
Sbjct: 126 WEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE-WICLETLTPDTQYEFQVRV 184
Query: 186 FSNGGD-GRMS--SPAITFQ 202
G+ S S + F+
Sbjct: 185 KPLQGEFTTWSPWSQPLAFR 204
Score = 40.9 bits (95), Expect = 1e-04
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
AP + + N++W + + R + + + E A + +
Sbjct: 108 APISLQVVHVETHRCNISWEISQAS--HYFERHLEFEARTLSPGHTWEEAPLLTLKQKQE 165
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEG 90
W + L PDT+Y +V GE
Sbjct: 166 WICLETLTPDTQYEFQVRVKPLQGEF 191
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 46.6 bits (111), Expect = 3e-07
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEV-DQDMSRANDTIIPVGNT 165
PS ++ +T V + P PI+ YK V ++
Sbjct: 9 SPSIDQVE-PYSSTAQVQFD--EPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 65
Query: 166 LDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
IV L P Y +R+ A + G G +S+
Sbjct: 66 GIVTIVGLKPETTYAVRLAALNGKGLGEISAA 97
Score = 39.7 bits (93), Expect = 8e-05
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 16 STAINVTWNPIELIRENIRGRLI-GHRIKYWKEDNPEETAVYYLSRT--TRNWALIVGLQ 72
S+ V ++ E G I ++ ++ + +Y ++ IVGL+
Sbjct: 19 SSTAQVQFDEPE----ATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLK 74
Query: 73 PDTKYYVKVMAYNNAGEGPESE 94
P+T Y V++ A N G G S
Sbjct: 75 PETTYAVRLAALNGKGLGEISA 96
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 46.6 bits (111), Expect = 3e-07
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 100 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRAND 157
+ P P + ++ + TT + WR P I GY V + AN
Sbjct: 3 SGSSGPTSAPQHLTVEDVTDTTTTLKWR--PPDRIGAGGIDGYLVEYCLEGSEEWVPANK 60
Query: 158 TIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
+ + DL G R RV+ + G ++
Sbjct: 61 EPV---ERCGFTVKDLPTGARILFRVVGVNIAGRSEPATL 97
Score = 40.0 bits (94), Expect = 7e-05
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 19/118 (16%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVY-YLSRTTR 63
APQ + T + W P + G + G+ ++Y E + E
Sbjct: 11 APQHLTVEDVTDTTTTLKWRPPD---RIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 67
Query: 64 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTT 121
+ L + +V+ N AG + V I+ P++
Sbjct: 68 --FTVKDLPTGARILFRVVGVNIAGRSEPAT-------------LLQPVTIRESGPSS 110
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 46.6 bits (111), Expect = 4e-07
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 166
PP V I+ + V +TW P + I GY ++ + T+I +
Sbjct: 20 PPQIVKIEDVWGENVALTWT--PPKDDGNAAITGYTIQKADKKSMEWF---TVIEHYHRT 74
Query: 167 DADIVDLSPGKRYHMRVLAFSNGGDGRMSSP 197
A I +L G Y+ RV + + G ++
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATM 105
Score = 39.3 bits (92), Expect = 1e-04
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
PQ V + +TW P + ++ + G+ I+ + + E V T
Sbjct: 20 PPQIVKIEDVWGENVALTWTPPK---DDGNAAITGYTIQKADKKSMEWFTVIEHYHRTS- 75
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESE 94
A I L +YY +V + N G ++
Sbjct: 76 -ATITELVIGNEYYFRVFSENMCGLSEDAT 104
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 46.4 bits (110), Expect = 5e-07
Identities = 14/108 (12%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 6 PQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNW 65
P + + + + ++ +++ ++ + +KY +D ++ + +
Sbjct: 11 PPSIHGQPSSGKSFKLSITK----QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNK-DH 65
Query: 66 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVH 113
++ LQ Y V++ A N G + E + P H
Sbjct: 66 IILEHLQWTMGYEVQITAANRLGYSEPTV--YEFSMPPKPNIIKDHHH 111
Score = 43.7 bits (103), Expect = 3e-06
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 103 KAPQKPPSA--VHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTII 160
+A + PS +H + + + ++ PI+ Y V+ D++ +
Sbjct: 3 EASMREPSPPSIHGQPSSGKSFKLSIT--KQDDGGAPILEYIVKYRSKDKEDQWLEKKV- 59
Query: 161 PVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAIT 200
GN + L Y +++ A + G + +
Sbjct: 60 -QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 98
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 45.7 bits (108), Expect = 8e-07
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 2/113 (1%)
Query: 100 TYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTI 159
++ P P + + ++ + W + + +R ++D + +
Sbjct: 10 PHKVVPLSKPHPPVVGKVTHHSIELYWDL-EQKEKRQGPQEQWLRFSIEEEDPKMHSYGV 68
Query: 160 IPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSG 212
I G + L P Y R+ S G+ SP ++ E SG
Sbjct: 69 IYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYE-YSPVVSVATTRESGPSSG 120
Score = 45.3 bits (107), Expect = 1e-06
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 6/112 (5%)
Query: 1 MPQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYY-LS 59
+P P +I + W+ + + R +++ E+ + Y +
Sbjct: 14 VPLSKPHPPVVGKVTHHSIELYWDLEQ---KEKRQGPQEQWLRFSIEEEDPKMHSYGVIY 70
Query: 60 RTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
++ GL+P T Y ++ + +GE S T P S
Sbjct: 71 TGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT--TRESGPSSG 120
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 45.3 bits (107), Expect = 1e-06
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 19/106 (17%)
Query: 16 STAINVTWNP----------IELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNW 65
I V W ++ + + + + +N
Sbjct: 30 HDTITVHWISDDEFSISSYELQYTIFTGQAN--------FISLYNSVDSWMIVPNIKQNH 81
Query: 66 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
+ GLQ T+Y V A N AG SE +T + + PS+
Sbjct: 82 YTVHGLQSGTRYIFIVKAINQAG-SRNSEPTRLKTNSQPFKSGPSS 126
Score = 43.0 bits (101), Expect = 9e-06
Identities = 24/118 (20%), Positives = 35/118 (29%), Gaps = 14/118 (11%)
Query: 88 GEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKV---- 143
G S L Y AP P + + T+ V W I Y++
Sbjct: 1 GSSGSSGEGL--DYLTAPNPPSIREELCTASHDTITVHWISDDEF----SISSYELQYTI 54
Query: 144 ---RVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 198
+ + S + I+P + L G RY V A + G S P
Sbjct: 55 FTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRN-SEPT 111
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 46.4 bits (109), Expect = 2e-06
Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 25/201 (12%)
Query: 5 APQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTT 62
P + S + + W P E ++G + + ++Y+ +
Sbjct: 11 KPANITFLSINMKNV---LQWTPPE----GLQGVKVTYTVQYFIYGQKKWLNKSECRNIN 63
Query: 63 RNWALI--VGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS--------AV 112
R + + + +YY +V A +E + + PP ++
Sbjct: 64 RTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSI 123
Query: 113 HIKGINPTTVHVTWRYVSPSFEE-EPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIV 171
+ P + S ++ + Y V V + V N +
Sbjct: 124 SVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSN----RTWSQCVTNH-TLVLT 178
Query: 172 DLSPGKRYHMRVLAFSNGGDG 192
L P Y + V +F G
Sbjct: 179 WLEPNTLYCVHVESFVPGPPR 199
Score = 37.1 bits (85), Expect = 0.002
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 22 TWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKV 81
+ + + I L + + + + T + ++ L+P+T Y V V
Sbjct: 136 NPEDLPVSMQQIYSNL-KYNVSVLNTKSNRTWSQ----CVTNHTLVLTWLEPNTLYCVHV 190
Query: 82 MAYNNA--GEGPESERYLERT 100
++ SE+ RT
Sbjct: 191 ESFVPGPPRRAQPSEKQCART 211
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 44.6 bits (106), Expect = 2e-06
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 10/107 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRG-RLIGHRIKYWKEDNPEETAVYYLSRTTR 63
P T +++ W+ I + ++ +E + Y
Sbjct: 10 MPASPVLTKAGITWLSLQWSK----PSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLA 65
Query: 64 NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 110
+ L+ TKY KV+AYN+ G+ SE + P PS
Sbjct: 66 --YTVKNLRRSTKYKFKVIAYNSEGKSNPSE---VVEFTTCPDSGPS 107
Score = 43.1 bits (102), Expect = 5e-06
Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPV 162
+ P++ + T + + W PS + I Y + E++++ S
Sbjct: 6 SGPSMPASPVLTKAGITWLSLQWS--KPSGTPSDEGISYIL---EMEEETSGYGFKPKYD 60
Query: 163 GNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSG 212
G L + +L +Y +V+A+++ G S + F + SG
Sbjct: 61 GEDLAYTVKNLRRSTKYKFKVIAYNSEGKSN-PSEVVEFTTCPDSGPSSG 109
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 44.6 bits (106), Expect = 2e-06
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDM-SRANDTIIP 161
+P PP I TV + W P + I Y V ++ +AN + I
Sbjct: 9 SPIDPPGKPVPLNITRHTVTLKWA--KPEYTGGFKITSYIVEKRDLPNGRWLKANFSNIL 66
Query: 162 VGNTLDADIVDLSPGKRYHMRVLAF-SNGGDGRMSSPAITFQMGEEKE 208
+ + L+ Y RV+A + G S P+ ++ E
Sbjct: 67 ---ENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVE 111
Score = 32.3 bits (74), Expect = 0.037
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRG-RLIGHRIKYWKEDNPE-ETAVYYLSRTT 62
P + + W E G ++ + ++ N A +
Sbjct: 13 PPGKPVPLNITRHTVTLKWAK----PEYTGGFKITSYIVEKRDLPNGRWLKANFSNILEN 68
Query: 63 RNWALIVGLQPDTKYYVKVMAYNNAGEG 90
+ GL D Y +V+A N AG
Sbjct: 69 E--FTVSGLTEDAAYEFRVIAKNAAGAI 94
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 44.5 bits (105), Expect = 2e-06
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 163
+ PP + P V + W P + + GY + + Q + + G
Sbjct: 6 SGLSPPRGLVAV-RTPRGVLLHW--DPPELVPKRLDGYVLEGRQGSQGWEVLDPAVA--G 60
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 198
+ + L Y R++AF+ S+ A
Sbjct: 61 TETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95
Score = 36.1 bits (83), Expect = 0.002
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 16 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 75
+ + W+P E + RL G+ ++ + E ++ T L+ GL D
Sbjct: 20 PRGVLLHWDP----PELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTE-TELLVPGLIKDV 74
Query: 76 KYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSA 111
Y +++A+ + S + PS+
Sbjct: 75 LYEFRLVAFAGSFVSDPSN---TANVSTSGLSGPSS 107
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 46.8 bits (111), Expect = 3e-06
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFE-EEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 166
PP I+ I V ++W+ P+ + + Y + E + P +
Sbjct: 12 PPRFPIIENILDEAVILSWK--PPALDGGSLVTNYTIEKREAM------GGSWSPCAKSR 63
Query: 167 D--ADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFK 210
I L GK+Y R++A + G + P + ++ +
Sbjct: 64 YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKR 109
Score = 29.8 bits (67), Expect = 0.83
Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 9/133 (6%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
P+ A+ ++W P L + + + I+ + + +++
Sbjct: 12 PPRFPIIENILDEAVILSWKPPAL---DGGSLVTNYTIEKREAMGGSWSPC---AKSRYT 65
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ I GL+ +Y +++A N G+ E P ++ V
Sbjct: 66 YTTIEGLRAGKQYEFRIIAENKHGQSKPCE---PTAPVLIPGDERKRRRGYDVDEQGKIV 122
Query: 125 TWRYVSPSFEEEP 137
+ S +
Sbjct: 123 RGKGTVSSNYDNY 135
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 45.3 bits (106), Expect = 6e-06
Identities = 24/202 (11%), Positives = 51/202 (25%), Gaps = 14/202 (6%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRN 64
+++ TW E+ + L + +E +
Sbjct: 121 TEDNYSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWF 180
Query: 65 WALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV 124
+ + V V + ++ PP V + I T + +
Sbjct: 181 PRTFILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQI-NPPLNVTAE-IEGTRMSI 238
Query: 125 TWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRV- 183
W S Y+V++ + +A I + +Y ++V
Sbjct: 239 QWEK-PVSAFPIHCFDYEVKIHNTRNGYLQI------EKLMTNAFISIIDDLSKYDVQVR 291
Query: 184 --LAFSNGGDGRMS--SPAITF 201
++ G S S I
Sbjct: 292 AAVSSMCREAGLWSEWSQPIYV 313
Score = 37.2 bits (85), Expect = 0.003
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLD 167
PP IK V + W+ + + Y+V++ +D T
Sbjct: 14 PPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYE-------TRITES 66
Query: 168 ADIVDLSPGKRYHMRVLAFSNGGDGRMS 195
+ L G +R + ++ S
Sbjct: 67 KAVTILHMGFSASVRTILQNDHSLLASS 94
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 43.7 bits (102), Expect = 2e-05
Identities = 24/213 (11%), Positives = 57/213 (26%), Gaps = 15/213 (7%)
Query: 2 PQVAPQGVFSRGFNSTAINVTWNPIELIRENIRGRL-IGHRIKYWKEDNPEETAVYYLSR 60
P+ R + W G + + + + +E E
Sbjct: 29 SSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVS 88
Query: 61 TTRNWALI--VGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 118
N Y +K+ + + + E P + +
Sbjct: 89 AGENSCYFNSSFTSIAIPYCIKLTSNGGTVD-EKCFSVDEIVQPDPPIALNWTLLNVSLT 147
Query: 119 PTTVHVTWRYVSPSFEEEP----IIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLS 174
+ R+ +P + ++ Y+++ EV++ ++ T + L
Sbjct: 148 GIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNET----KWKMMDPILTTSVPVYSLK 203
Query: 175 PGKRYHMRVLAFSNGGDGRMS--SPAITFQMGE 205
K Y +RV + G S + + +
Sbjct: 204 VDKEYEVRVRSKQRNS-GNYGEFSEVLYVTLPQ 235
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 40.9 bits (95), Expect = 1e-04
Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 7/139 (5%)
Query: 74 DTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPT-TVHVTWRYVSPS 132
K GE + + ++ T P + P + + VT+
Sbjct: 82 KFLLIGKSNICVKVGEKSLTCKKIDLTTIVKP-EAPFDLSVVYREGANDFVVTFNTSHLQ 140
Query: 133 FEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSN-GGD 191
+ ++ + V + + + L L P Y ++V + +
Sbjct: 141 KKYVKVLMHDVAYRQEKDENKWT--HVNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFK 198
Query: 192 GRMS--SPAITFQMGEEKE 208
G S SP+ F+ E
Sbjct: 199 GFWSEWSPSYYFRTPEINN 217
Score = 37.5 bits (86), Expect = 0.002
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 5 APQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTR 63
AP + + VT+N L + +++ H + Y +E + + LS +T+
Sbjct: 115 APFDLSVVYREGANDFVVTFNTSHL--QKKYVKVLMHDVAYRQEKDENKWTHVNLS-STK 171
Query: 64 NWALIVGLQPDTKYYVKV-MAYNNAGEGPESE 94
L LQP Y +KV ++ +G SE
Sbjct: 172 LTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSE 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 1e-04
Identities = 32/183 (17%), Positives = 57/183 (31%), Gaps = 57/183 (31%)
Query: 25 PIELIRENIRGRLIGHRIKY----------WKEDNPEETAVYYLS-R---TTRNWALIVG 70
I I+ +R RL+ + Y N + + LS + TTR +
Sbjct: 226 RIHSIQAELR-RLLKSK-PYENCLLVLLNVQ---NAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 71 LQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQK-PPSAVHIKGINPTTVHVTWRYV 129
L T ++ + ++ E + L + PQ P NP R +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV---LTTNP-------RRL 330
Query: 130 SPSFEEEPIIGYKVRV----WE----VDQDMSRANDTIIPVGNTLDADIVDLSPG---KR 178
S II +R W+ V+ D + +++ + L P K
Sbjct: 331 S-------IIAESIRDGLATWDNWKHVNCD---------KLTTIIESSLNVLEPAEYRKM 374
Query: 179 YHM 181
+
Sbjct: 375 FDR 377
Score = 29.1 bits (64), Expect = 1.5
Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 10/94 (10%)
Query: 29 IRENIRGRLIGHRIKYWKEDNPEETAVYYL-----SRTTRNWALIVG--LQPDTKYYVKV 81
+++ + L I + + L S+ V L+ + K+ +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 82 MAYNNAGEGPESERYLE---RTYRKAPQKPPSAV 112
+ + Y+E R Y V
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 38.2 bits (89), Expect = 3e-04
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 5 APQGV-FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTR 63
P G+ + N+TWN + +K + T + + T
Sbjct: 7 FPTGLSAVLDSSGNTANLTWNAAP--------GANSYNVKRSTKSGGPYTTIA--TNITS 56
Query: 64 NWALIVGLQPDTKYYVKVMAYNNAGEGPES 93
G+ TKYY V A +N E S
Sbjct: 57 TNYTDTGVATGTKYYYVVSAVSNGVETLNS 86
Score = 25.8 bits (57), Expect = 6.6
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 163
AP P + + T ++TW Y V + TI
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTWNAAPG------ANSYNV---KRSTKSGGPYTTIATNI 54
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPA 198
+ + ++ G +Y+ V A SNG + S+ A
Sbjct: 55 TSTNYTDTGVATGTKYYYVVSAVSNGVETLNSAEA 89
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 39.7 bits (92), Expect = 3e-04
Identities = 31/225 (13%), Positives = 68/225 (30%), Gaps = 20/225 (8%)
Query: 5 APQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEE-TAVYYLSRT 61
PQ V S+ F+ +TW P +++ + + Y V + T
Sbjct: 8 PPQNVTLLSQNFSVY---LTWLPGLGNPQDVT-----YFVAYQSSPTRRRWREVEECAGT 59
Query: 62 TR---NWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGIN 118
+ + K+ +V + + + P E + PP + +
Sbjct: 60 KELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYLFEVEPAPPV-LVLTQTE 118
Query: 119 PTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKR 178
+ Y P + Y+V W+ ++ + P G + + + +
Sbjct: 119 -EILSANATYQLPPCMPPLDLKYEVAFWKEGAG-NKTLFPVTPHGQPVQITL-QPAASEH 175
Query: 179 YHMRVLAFSNGGDGRMS--SPAITFQMGEEKEFKSGSPALYSAST 221
+ + + S S F + + SGS S ++
Sbjct: 176 HCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANASGSSGGSSGTS 220
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 38.6 bits (89), Expect = 7e-04
Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 10/109 (9%)
Query: 15 NSTAINVTWN-PIELIRENIRGRLIGHRIKYWKEDNPEETAVYYL---SRTTRNWALIVG 70
S ++W E + + + ++Y +P + + L +
Sbjct: 111 FSGQYQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLE 170
Query: 71 LQPDTKYYVKVMAYNNAGEGPE------SERYLERTYRKAPQKPPSAVH 113
+ D+ Y ++V A G + S+ + +T + ++ H
Sbjct: 171 FRKDSSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELKEHHHHHH 219
Score = 38.2 bits (88), Expect = 0.001
Identities = 23/206 (11%), Positives = 52/206 (25%), Gaps = 18/206 (8%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
+ L + +D +++ + + +
Sbjct: 10 YLQTVICILEMWNLHPSTLTLTW--QDQYEELKDEATSCSLHRSAHNATHATYTCHMDVF 67
Query: 75 ---TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSP 131
V + +G+ + P PP V + ++WR
Sbjct: 68 HFMADDIFSVQITDQSGQYSQECGSFLLAESIKP-APPFDVTVT--FSGQYQISWRSDYE 124
Query: 132 SFEEEPIIG---YKVRVWEV-DQDMSRANDTIIPV-GNTLDADIVDLSPGKRYHMRVLAF 186
+ G Y+++ D +I V ++ ++ Y ++V A
Sbjct: 125 DPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAG 184
Query: 187 SNGGDGRMS-----SPAITFQMGEEK 207
G S + FQ E+
Sbjct: 185 PMPGSSYQGTWSEWSDPVIFQTQSEE 210
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 38.5 bits (89), Expect = 8e-04
Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 15/193 (7%)
Query: 2 PQVAPQGV--FSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLS 59
P Q V S F + +TW+ + + I+Y + A
Sbjct: 4 PSDLLQHVKFQSSNFENI---LTWDSGPEGTPDTV-----YSIEYKTYGERDWVAKKGCQ 55
Query: 60 RTTRNWA--LIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI 117
R TR + YY +V A + G + + KPP I +
Sbjct: 56 RITRKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKV 115
Query: 118 NPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVD---QDMSRANDTIIPVGNTLDADIVDLS 174
+ V + + + ++ + + G + + L+
Sbjct: 116 RSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLT 175
Query: 175 PGKRYHMRVLAFS 187
P + ++
Sbjct: 176 PDTEFLGTIMILV 188
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 36.5 bits (84), Expect = 0.001
Identities = 10/91 (10%), Positives = 26/91 (28%), Gaps = 11/91 (12%)
Query: 108 PPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPV----- 162
S + + + +++ + W +F+ + +R + +
Sbjct: 11 RLSQLSVTDVTTSSLRLNWEAPPGAFD-----SFLLRFGVPSPSTLEPHPRPLLQRELMV 65
Query: 163 -GNTLDADIVDLSPGKRYHMRVLAFSNGGDG 192
G A + DL G Y + +
Sbjct: 66 PGTRHSAVLRDLRSGTLYSLTLYGLRGPHKA 96
Score = 36.1 bits (83), Expect = 0.002
Identities = 8/76 (10%), Positives = 24/76 (31%)
Query: 16 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 75
++++ + W ++ R + + TR+ A++ L+ T
Sbjct: 22 TSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGT 81
Query: 76 KYYVKVMAYNNAGEGP 91
Y + + +
Sbjct: 82 LYSLTLYGLRGPHKAD 97
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 36.1 bits (84), Expect = 0.001
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 14/98 (14%)
Query: 104 APQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVG 163
AP P+ + +++ ++W + S + + GY V +
Sbjct: 3 APT-APTNLASTAQTTSSITLSW---TASTDNVGVTGYDVYN----------GTALATTV 48
Query: 164 NTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 201
A I L+ Y V A G+ +S A++
Sbjct: 49 TGTTATISGLAADTSYTFTVKAKDAAGNVSAASNAVSV 86
Score = 34.9 bits (81), Expect = 0.003
Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 26/90 (28%)
Query: 5 APQGVFSRGFNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETA--VY----YL 58
AP + S +++I ++W DN T VY
Sbjct: 6 APTNLASTAQTTSSITLSWTAST--------------------DNVGVTGYDVYNGTALA 45
Query: 59 SRTTRNWALIVGLQPDTKYYVKVMAYNNAG 88
+ T A I GL DT Y V A + AG
Sbjct: 46 TTVTGTTATISGLAADTSYTFTVKAKDAAG 75
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 37.4 bits (85), Expect = 0.002
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 6/80 (7%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
NS + V+W + + ++ + E+ + +T+ +
Sbjct: 226 NSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTS------ATVICR 279
Query: 75 TKYYVKVMAYNNAGEGPESE 94
+ V A + SE
Sbjct: 280 KNASISVRAQDRYYSSSWSE 299
Score = 28.9 bits (63), Expect = 1.3
Identities = 19/121 (15%), Positives = 29/121 (23%), Gaps = 12/121 (9%)
Query: 75 TKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGI-NPTTVHVTWRYVSPSF 133
V V A + E PP + +K + N V V+W Y
Sbjct: 184 LPIEVMVDAVHKLK--YEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWS 241
Query: 134 EEEPIIG--YKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGD 191
+ V+V R + T + K + V A
Sbjct: 242 TPHSYFSLTFCVQVQGKS---KREKKDRVFTDKT----SATVICRKNASISVRAQDRYYS 294
Query: 192 G 192
Sbjct: 295 S 295
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 35.9 bits (82), Expect = 0.003
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 7/112 (6%)
Query: 2 PQVAPQGV-FSRGFNSTAINVTWNPIELIRENI--RGRLIGHRIKYWKEDNPEETAVYYL 58
P PQ V G I V+W P L + + G+ + V +
Sbjct: 17 PPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA---KGQRVAEVIFP 73
Query: 59 SRTTRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPS 110
+ + +V L+ V V + GE +S P P
Sbjct: 74 TADSTAV-ELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTPHP 124
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine
receptor; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 34.6 bits (79), Expect = 0.006
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
N + VTW + + ++Y + V + T I
Sbjct: 22 NPRRLEVTWQTPSTW-PDPESFPLKFFLRYRPLILDQWQHVELSNGT---AHTITDAYAG 77
Query: 75 TKYYVKVMAYNN 86
+Y ++V A +N
Sbjct: 78 KEYIIQVAAKDN 89
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 33.9 bits (77), Expect = 0.011
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 9/86 (10%)
Query: 107 KPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTL 166
V I+ T++ + W + E Y ++ V + +N + +
Sbjct: 9 IQVFDVTAVNISATSLTLIW----KVSDNESSSNYTYKI-HVAGETDSSNLNV----SEP 59
Query: 167 DADIVDLSPGKRYHMRVLAFSNGGDG 192
A I L Y++ V +G
Sbjct: 60 RAVIPGLRSSTFYNITVCPVLGDIEG 85
Score = 30.4 bits (68), Expect = 0.18
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 15 NSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPD 74
++T++ + W +N ++I E + V + A+I GL+
Sbjct: 20 SATSLTLIWKV----SDNESSSNYTYKIHVAGETDSSNLNV------SEPRAVIPGLRSS 69
Query: 75 TKYYVKVMAYNNAGEGP 91
T Y + V EG
Sbjct: 70 TFYNITVCPVLGDIEGT 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.015
Identities = 35/167 (20%), Positives = 55/167 (32%), Gaps = 58/167 (34%)
Query: 32 NIRGRLIGHRIKYWKEDN---PEETAVY-YLSRTTRNWALIVGLQPDTKYYVKVMAYNNA 87
+I Y + N P V L +N L+V +
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN--LVV-----------------S 380
Query: 88 GEGPESERYLERTYRK--AP------QKPPSAVHIKGIN---PTTV--HVTWRYVSPSFE 134
G P+S L T RK AP + P S +K N P H + P+ +
Sbjct: 381 GP-PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH--LLVPASD 437
Query: 135 EEPIIGYKVRVWEVDQDMSRANDTI------IPVGNTLD-ADIVDLS 174
+++D+ + N + IPV +T D +D+ LS
Sbjct: 438 L------------INKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Score = 31.9 bits (72), Expect = 0.21
Identities = 52/239 (21%), Positives = 78/239 (32%), Gaps = 84/239 (35%)
Query: 27 ELIRENIRGRLI---GHRIKYWKEDNPEET-AVYYLSRTTRNWALIVGLQPDTKYYV--K 80
ELIR + + G I W E NP T YL + LI +Q Y V K
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQL-AHYVVTAK 254
Query: 81 VMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHV----TWRYVSPSFEEE 136
++ + P R + + H +G+ T V + +W SF
Sbjct: 255 LLGFT-----PGELRSYLKG---------ATGHSQGL-VTAVAIAETDSW----ESFFVS 295
Query: 137 PI--------IGYKVRVWE----------VDQDMSRANDTIIP------VGNTLDA--DI 170
IG VR +E + +D S N+ +P T + D
Sbjct: 296 VRKAITVLFFIG--VRCYEAYPNTSLPPSILED-SLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 171 VD-----LSPGKRYHMRVLAFSNGGDGRMSSPAITFQMGEEKEFKSGSP-ALYSASTTL 223
V+ L GK+ ++ NG + SG P +LY + TL
Sbjct: 353 VNKTNSHLPAGKQVE---ISLVNGAK--------NLVV-------SGPPQSLYGLNLTL 393
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 34.5 bits (78), Expect = 0.018
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 70 GLQPDTKYYVKVMAYNNAGEGPESE 94
L T Y K+ A + GE E
Sbjct: 206 KLNRHTIYNFKIAAKYSNGEVSSKE 230
Score = 34.5 bits (78), Expect = 0.020
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 12/116 (10%)
Query: 86 NAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTWRYVSPSFEEEPIIGYKVRV 145
++ +E T + P IN V VTW + E + GY
Sbjct: 131 EIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTW---TEPETTEGLEGY---- 183
Query: 146 WEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYHMRVLAFSNGGDGRMSSPAITF 201
+ +D + + + L+ Y+ ++ A + G+ S ++T
Sbjct: 184 -ILYKDGKKVAEI---GKDETSYTFKKLNRHTIYNFKIAAKYSNGEVS-SKESLTL 234
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 30.7 bits (68), Expect = 0.29
Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 8/138 (5%)
Query: 62 TRNWALIVGLQPDTKYYVKVMAYNNAGEGPESERYLER-TYRKAPQKPPSAVHIKGINPT 120
A+ + + ++ G E +E+ P+ + + PT
Sbjct: 59 EHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPT 118
Query: 121 TVHVTWRYVSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIPVGNTLDADIVDLSPGKRYH 180
++ ++W + Y++ E + T+ +T A I L PG Y
Sbjct: 119 SLLISWDASY-----YGVSYYRITYGETGGNSPVQEFTVPYSSST--ATISGLKPGVDYT 171
Query: 181 MRVLAFSNGGDGRMSSPA 198
+ V A+S+ SP
Sbjct: 172 ITVYAYSDYYGSHHYSPI 189
Score = 28.0 bits (61), Expect = 2.5
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 24 NPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMA 83
+ + + + +RI Y + + + ++ A I GL+P Y + V A
Sbjct: 118 TSLLISWDASYYGVSYYRITYGETGGNSPVQEFTVPYSSST-ATISGLKPGVDYTITVYA 176
Query: 84 YNNAGEGPESE 94
Y++
Sbjct: 177 YSDYYGSHHYS 187
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 30.5 bits (68), Expect = 0.37
Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 3/61 (4%)
Query: 24 NPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDTKYYVKVMA 83
P + E+I + I K + ++ ++ V+V
Sbjct: 130 APAQDTYESIFSHFREYEIAIRKVPGQFTFTH---KKVKHEQFSLLTSGEVGEFCVQVKP 186
Query: 84 Y 84
Sbjct: 187 S 187
Score = 30.5 bits (68), Expect = 0.41
Identities = 11/119 (9%), Positives = 29/119 (24%), Gaps = 3/119 (2%)
Query: 71 LQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTW--RY 128
L Y +V A + + + + + S +
Sbjct: 69 LYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNGFILGKIQLPRPK 128
Query: 129 VSPSFEEEPIIGYKVRVWEVDQDMSRANDTIIP-VGNTLDADIVDLSPGKRYHMRVLAF 186
++P+ + I R +E+ T ++ + ++V
Sbjct: 129 MAPAQDTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHEQFSLLTSGEVGEFCVQVKPS 187
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 28.9 bits (64), Expect = 0.71
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 14 FNSTAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYY--LSRTTRNWALIVGL 71
N+T V W + + +++ +++ T +S N
Sbjct: 28 CNTTHCLVRWKQ-PRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPSS 86
Query: 72 QPDTKYYVKVMA 83
+P K+ VK+ A
Sbjct: 87 EPRAKHSVKIRA 98
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.81
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 205 EEKEFK--SGSPALYSASTTLLLVMSSTL 231
E++ K S LY+ + L + +T+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATM 46
>2hft_A Human tissue factor; coagulation factor; 1.69A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1jps_T 1ahw_C 1boy_A 1tfh_A 1wtg_T*
1wss_T* 1wqv_T* 1wun_T* 1wv7_T* 2zp0_T* 2zwl_T* 2zzu_T*
1z6j_T* 2aei_T* 2flb_T* 2b7d_T* 2f9b_T* 1o5d_T* 2flr_T*
1w0y_T* ...
Length = 218
Score = 28.6 bits (63), Expect = 1.4
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 24 NPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSR--TTRNWALIVGLQPDTKYYVKV 81
N L ++ G+ + + + YWK + E+ + T ++ + Y V
Sbjct: 137 NNTFLSLRDVFGKDLIYTLYYWKSSSQEKGEFRSGKKTAKTNTNEFLIDVDKGENYCFSV 196
Query: 82 MAY 84
A
Sbjct: 197 QAV 199
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone;
HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A*
3vlf_A* 4a3v_A* 4a3t_A*
Length = 500
Score = 28.6 bits (63), Expect = 1.9
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 12/87 (13%)
Query: 114 IKGINPTTVHVTWRYVSPSF----------EEEPIIG--YKVRVWEVDQDMSRANDTIIP 161
+ I + R+V E P + + ++ ++SR +
Sbjct: 265 LLEIRNQDKYWALRHVKKILPVFAQLFEDTENYPDVRAFSTNCLLQLFAEVSRIEEDEYS 324
Query: 162 VGNTLDADIVDLSPGKRYHMRVLAFSN 188
+ T+D D + + + L N
Sbjct: 325 LFKTMDKDSLKIGSEAKLITEWLELIN 351
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG;
2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB:
2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Length = 424
Score = 27.4 bits (60), Expect = 5.5
Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 28/152 (18%)
Query: 16 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTR---------NWA 66
A+ ++W ++ + ++YW E N + T R +
Sbjct: 31 GRAMIISWVTMDEPGSSA--------VRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHHT 82
Query: 67 LIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPPSAVHIKGINPTTVHVTW 126
I L+ +TKYY +V G + R+ T + P + G +
Sbjct: 83 TIRKLKYNTKYYYEV------GLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNT 136
Query: 127 RYVSPSFEEEPIIGYKVRVWEVDQDMSRANDT 158
+ + K + D+S A+
Sbjct: 137 -----TLSHYELSPKKGQTVLFVGDLSYADRY 163
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 25.9 bits (56), Expect = 6.4
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 7/75 (9%)
Query: 16 STAINVTWNPIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTRNWALIVGLQPDT 75
+ + WN + I I W+ N N I GL+P
Sbjct: 20 PNSHPIQWNAPQ-------PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGV 72
Query: 76 KYYVKVMAYNNAGEG 90
Y ++++ G
Sbjct: 73 VYEGQLISIQQYGHQ 87
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A
{Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Length = 426
Score = 27.0 bits (59), Expect = 7.3
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 24/104 (23%)
Query: 16 STAINVTWN-PIELIRENIRGRLIGHRIKYWKEDNPEETAVYYLSRTTR---------NW 65
+ ++W P + N + YW E++ + T + +
Sbjct: 37 GRGVIISWTTPYDKAGANK--------VFYWSENSKSQKRAMGTVVTYKYYNYTSAFIHH 88
Query: 66 ALIVGLQPDTKYYVKVMAYNNAGEGPESERYLERTYRKAPQKPP 109
I L+ DTKYY ++ G G ++ T K P
Sbjct: 89 CTIKDLEYDTKYYYRL------GFGDAKRQFWFVTPPKPGPDVP 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.403
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,760,734
Number of extensions: 227230
Number of successful extensions: 1192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 864
Number of HSP's successfully gapped: 320
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)