BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1489
(229 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|322794006|gb|EFZ17244.1| hypothetical protein SINV_09000 [Solenopsis invicta]
Length = 246
Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 129/231 (55%), Positives = 164/231 (70%), Gaps = 4/231 (1%)
Query: 1 NISTTGPKLKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIK 57
++ T+ LKE P KGK HSS LWL RQ DPYV+KAK+E YRCRSAFKLLEI+ + K
Sbjct: 13 SVHTSSALLKETPRNLKGKKHSSQLWLARQLRDPYVEKAKQEKYRCRSAFKLLEINERFK 72
Query: 58 FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKC 117
PGL V+DCGAAPGSW+QVA L N+HG K G V ++DKLP YP++GA VL
Sbjct: 73 IFSPGLTVVDCGAAPGSWTQVATNLTNAHG-KKKGRIGRVYAIDKLPFYPVEGATVLGNM 131
Query: 118 DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG 177
DFT P Q+ L+ +L+ DK+DVVLSDMAPNATGM+EMDHD I LA A +RFA+ SK
Sbjct: 132 DFTSPKTQETLIELLQGDKVDVVLSDMAPNATGMKEMDHDNIILLAYAALRFALQISKIN 191
Query: 178 ADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+IK+WDG Q E+++++FY+ +KI++P ++R S E F L RGFKG
Sbjct: 192 GTLVIKVWDGGKAQQFEQNLSKFYNSIKIIRPDATRDESTEKFFLARGFKG 242
>gi|332027855|gb|EGI67913.1| Putative ribosomal RNA methyltransferase [Acromyrmex echinatior]
Length = 246
Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 125/231 (54%), Positives = 162/231 (70%), Gaps = 4/231 (1%)
Query: 1 NISTTGPKLKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIK 57
++ T+G LKE P K K HSS LWL+RQ DPYV+KAK+E YRCRSAFKLLEI+ + K
Sbjct: 13 SLHTSGTLLKETPRNLKNKKHSSQLWLERQLRDPYVEKAKQEKYRCRSAFKLLEINERFK 72
Query: 58 FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKC 117
L PGL V+DCGAAPGSW+QVA L N+ G + P G V +VDKLP YP++GA VL
Sbjct: 73 ILSPGLTVVDCGAAPGSWTQVATNLTNAGG-KKEGPVGRVYAVDKLPFYPVEGATVLGNM 131
Query: 118 DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG 177
DFT Q+ L +L+ DK+DVVLSDMAPNA+G+RE+DHD I LA A +RFA+ SK
Sbjct: 132 DFTNIKTQETLSKLLQGDKVDVVLSDMAPNASGVREIDHDNIMLLAYAALRFALQISKVQ 191
Query: 178 ADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ ++KIWDG Q E+++ +FY+ V+ ++P ++R S E F L R FKG
Sbjct: 192 STFVVKIWDGGKTQQFEQNLLKFYNSVRAIRPDATRDESTETFFLARRFKG 242
>gi|307174434|gb|EFN64935.1| Putative ribosomal RNA methyltransferase CG11447 [Camponotus
floridanus]
Length = 246
Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 125/223 (56%), Positives = 158/223 (70%), Gaps = 4/223 (1%)
Query: 9 LKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
LKE P KGK HSS LWL RQ DPYV+KAK+ENYRCRSAFKLL+I+ K K PGL V
Sbjct: 21 LKETPRNLKGKKHSSQLWLMRQIRDPYVEKAKQENYRCRSAFKLLQINEKYKIFCPGLTV 80
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
+DCGAAPGSW+QVA L NSH S+ P G V ++DKLP +P++GA VL DFT Q
Sbjct: 81 IDCGAAPGSWTQVATNLTNSHA-KSQGPIGKVYAIDKLPFFPVEGATVLGNMDFTITKTQ 139
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ L+ +L+ K DVVLSDMAPNA+G+R +DHD I LA A ++FA+ +K +IK+W
Sbjct: 140 ETLLALLQGKKADVVLSDMAPNASGIRAIDHDNIILLAYAALKFALQITKIHGTLVIKVW 199
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
DG +LE+++ RFY+ VKI+KP ++R S E F L RGFKG
Sbjct: 200 DGGKSQELEQNLLRFYNNVKIVKPDATRDESTEKFFLARGFKG 242
>gi|307202661|gb|EFN81981.1| Putative ribosomal RNA methyltransferase CG11447 [Harpegnathos
saltator]
Length = 246
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 156/223 (69%), Gaps = 4/223 (1%)
Query: 9 LKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
LKE P K K HSS WL RQ DPYV+KAK+E YRCRSAFKLLEI + +PG V
Sbjct: 21 LKETPRNLKHKKHSSQQWLVRQLRDPYVEKAKQERYRCRSAFKLLEIQERFNIFKPGQVV 80
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
+DCGAAPGSW++VAV +N+ G G V +VDKLP YP++GAVVLS DFT Q
Sbjct: 81 VDCGAAPGSWTEVAVNAINASGKKDGSV-GKVFAVDKLPFYPVEGAVVLSGMDFTSASTQ 139
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ L ++DDK DVVLSDMAPNA+G+RE+DHD I LA + ++FA+ +KP ++KIW
Sbjct: 140 EELRKTMQDDKADVVLSDMAPNASGVREIDHDNIIMLAYSAMKFALQMNKPDGTFVVKIW 199
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
DGR QLE+ + RFY++V+I++P ++R S E+F L R FKG
Sbjct: 200 DGRKTQQLEQDMLRFYNRVRIVRPNATRDESTEMFFLARDFKG 242
>gi|91089457|ref|XP_968154.1| PREDICTED: similar to cell division protein ftsj [Tribolium
castaneum]
gi|270012568|gb|EFA09016.1| hypothetical protein TcasGA2_TC006724 [Tribolium castaneum]
Length = 228
Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 123/210 (58%), Positives = 152/210 (72%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SSH WL RQ DPYV+KAK NYRCRSAFKLLEID + K LRPG V+DCGAAPGSWSQV
Sbjct: 16 SSHEWLSRQLTDPYVEKAKIMNYRCRSAFKLLEIDDRFKILRPGFVVIDCGAAPGSWSQV 75
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ VNS G D KQ +GLVLS+DK I+ I+GA +L DFT Q+ LV +L K D
Sbjct: 76 AVRRVNSDGSDPKQAQGLVLSIDKQQIFAINGATILGNLDFTDVKSQEILVEVLGGKKAD 135
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
V+SDMAPNA+G +E+D++ I +L +V+RFAV S+ GA ++K+W QLE +
Sbjct: 136 AVISDMAPNASGFKELDNENIIKLCYSVLRFAVQNSRAGACLVVKLWQCGQAKQLENDFS 195
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+FY+ VK +KP SSRS SAE+FLLGR FKG
Sbjct: 196 KFYASVKYVKPNSSRSDSAEIFLLGRDFKG 225
>gi|345487817|ref|XP_003425762.1| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like
[Nasonia vitripennis]
Length = 248
Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/223 (53%), Positives = 157/223 (70%), Gaps = 3/223 (1%)
Query: 9 LKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
LKE P KGK HSS WL RQF DPYV+KA++ENYRCRSAFKLLEI+ K + L PGL V
Sbjct: 19 LKEKPTNLKGKKHSSQQWLSRQFKDPYVEKARQENYRCRSAFKLLEINRKHRILSPGLHV 78
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
+DCGAAPGSW+QVA +L NSHG + G V+++DKLPI+PI+GA V DFT D Q
Sbjct: 79 VDCGAAPGSWTQVATQLTNSHGKMLGEQVGKVIAIDKLPIHPIEGATVYGNLDFTTEDAQ 138
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ L L ++VV+SDMAPNA+G+R++DH+ I +LA +FA+ S ++K+W
Sbjct: 139 NILKAALGGKFVEVVMSDMAPNASGVRDLDHENIIKLAYMAFKFAIEVSCYEGTFIVKVW 198
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
DG P+LEE + RF+ VKI +P ++R S+E F++ RGFKG
Sbjct: 199 DGHKCPKLEEDLARFFRNVKIARPQATRDESSEKFIIARGFKG 241
>gi|383853926|ref|XP_003702473.1| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like
[Megachile rotundata]
Length = 251
Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 118/222 (53%), Positives = 156/222 (70%), Gaps = 4/222 (1%)
Query: 10 KEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVL 66
+E P KGK HSS LWL RQ DPYV+KAKKENYRCRSAFKLLEI+ + K L+PG V+
Sbjct: 22 RETPRNLKGKKHSSQLWLTRQLKDPYVEKAKKENYRCRSAFKLLEINERFKILKPGQIVI 81
Query: 67 DCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQD 126
DCGAAPGSW+QVA+KL N++G ++ + G V+ +DK+P+YPI+GA +L DFT Q
Sbjct: 82 DCGAAPGSWTQVAIKLTNANGVNN-EAVGTVIGIDKIPMYPIEGATLLGNMDFTTEASQK 140
Query: 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186
L+ +LKD K DVVLSDMAPNA+G+R++DH I +LA +FA+ + + KIWD
Sbjct: 141 ELLKLLKDRKADVVLSDMAPNASGVRDIDHVNIIKLAYLAFKFALQTTCIDGTFVCKIWD 200
Query: 187 GRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
G QLE+ + +FY V+ ++P ++R S E FLL GFKG
Sbjct: 201 GGQSQQLEQDLLKFYKHVRNVRPQATRDDSTEKFLLATGFKG 242
>gi|170030475|ref|XP_001843114.1| ribosomal RNA large subunit methyltransferase J [Culex
quinquefasciatus]
gi|167867355|gb|EDS30738.1| ribosomal RNA large subunit methyltransferase J [Culex
quinquefasciatus]
Length = 239
Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 116/215 (53%), Positives = 150/215 (69%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK SS WL RQ DP+V++AK NYRCRSAFKLLEID K ++PG V+DCGAAPG
Sbjct: 22 KGKKKSSQEWLTRQLNDPFVERAKMANYRCRSAFKLLEIDQKYNIIKPGFTVIDCGAAPG 81
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SWSQ+AVK N+ G +PKG V+ VD L IYPI A L DFT+ + QD++ ++L
Sbjct: 82 SWSQIAVKQSNADGAAPGKPKGTVIGVDLLQIYPIAHATTLGNTDFTRTESQDKIRSLLG 141
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ ++D VLSDMAPNATG+R +D + I L +V+RFA+ S P A L+K+WD P L
Sbjct: 142 EKRIDCVLSDMAPNATGVRSLDQENIITLCYSVLRFAILMSSPNASLLMKVWDNGEVPAL 201
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E++I R+Y QVK +KP +SR+ SAE F+L RGF G
Sbjct: 202 EKNIQRYYQQVKRIKPRASRADSAENFVLARGFVG 236
>gi|380028862|ref|XP_003698104.1| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like
[Apis florea]
Length = 251
Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 115/231 (49%), Positives = 158/231 (68%), Gaps = 4/231 (1%)
Query: 1 NISTTGPKLKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIK 57
N+ T +E+P KGK HSS LWL RQ DPYV+ AK+ENYRCRSA+KLLEI+ + K
Sbjct: 13 NLHTYSTLFREIPQNLKGKKHSSQLWLTRQIQDPYVELAKRENYRCRSAYKLLEINERFK 72
Query: 58 FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKC 117
L+PG V+DCGAAPGSW+QVAVK N++ K G VL +DK PIYPI+GA +L+
Sbjct: 73 ILKPGKIVIDCGAAPGSWTQVAVKFTNANA-KQKSAIGTVLGIDKQPIYPIEGATLLNGM 131
Query: 118 DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG 177
DFT Q++++ IL K++V LSDMAPNA+G+R++DH+ I QL + ++FA+
Sbjct: 132 DFTAATSQNKILNILNGQKVNVFLSDMAPNASGIRDLDHENIMQLVYSALKFALQIIHIN 191
Query: 178 ADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ K+WDG+ QLE+ +TRF+ VK ++P ++R S E FL+ R FKG
Sbjct: 192 GIFVCKLWDGKKSLQLEKDLTRFFKYVKNIRPKATRDESTEKFLIAREFKG 242
>gi|328697206|ref|XP_001950144.2| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like
[Acyrthosiphon pisum]
Length = 234
Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/213 (53%), Positives = 154/213 (72%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
++HSS WL RQ DPYV+KAK ++YRCRSAFKLL++D + L+PGL V+D GAAPGSW
Sbjct: 18 RNHSSKEWLLRQKTDPYVEKAKIKSYRCRSAFKLLQMDDRFSILKPGLCVIDIGAAPGSW 77
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +NS+ +S+ P GL++ +D +YPI+G +L DFT P ++ +L +
Sbjct: 78 SQVAASRINSNATNSEIPTGLLIGIDLQQMYPIEGVTLLGNSDFTSPKTWQKIKELLNNR 137
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+DVVLSDMAPNA+G++ +DHDLI +LA +V++FAV S GA CLIKI DG ++E
Sbjct: 138 PIDVVLSDMAPNASGVKHLDHDLIIKLAYSVVKFAVLNSNVGATCLIKILDGNQNAKIEN 197
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ +FYS VK +KP +SRS SAE +LL RGFKG
Sbjct: 198 TLIKFYSNVKFVKPEASRSDSAEKYLLARGFKG 230
>gi|157128998|ref|XP_001655238.1| cell division protein ftsj [Aedes aegypti]
gi|108872397|gb|EAT36622.1| AAEL011303-PA [Aedes aegypti]
Length = 239
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 151/215 (70%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK SS WL RQ DPYV+KAK NYRCRSAFKLLEID K ++PG V+DCGA+PG
Sbjct: 22 KGKSKSSQQWLSRQLNDPYVEKAKMLNYRCRSAFKLLEIDQKYNIIKPGHTVIDCGASPG 81
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SWSQ+AV+ N+ G +P+G+V+ VD L IYPI+ A +L DF + + QD++ +L
Sbjct: 82 SWSQIAVQQSNASGSQPGKPRGMVIGVDLLQIYPIEHATMLGNTDFMKQESQDKIRALLG 141
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ ++D VLSDMAPNATG+R +D + I L +V+RFA+ S P A L+K+WD P L
Sbjct: 142 ERRVDCVLSDMAPNATGVRSLDQENIITLCYSVLRFAILMSSPNASLLVKVWDNGEVPLL 201
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E+++ ++Y QVK +KP +SRS SAE F+L RGF G
Sbjct: 202 EKNMQKYYQQVKRIKPRASRSDSAENFILARGFTG 236
>gi|328783221|ref|XP_003250253.1| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like
[Apis mellifera]
Length = 251
Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/231 (49%), Positives = 156/231 (67%), Gaps = 4/231 (1%)
Query: 1 NISTTGPKLKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIK 57
N+ T +E P KGK HSS LWL RQ DPYV+ AK+ENYRCRSA+KLLEI+ + K
Sbjct: 13 NLHTYSTLFRETPQNLKGKKHSSQLWLTRQIEDPYVELAKRENYRCRSAYKLLEINERFK 72
Query: 58 FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKC 117
L PG V+DCGAAPGSW+QVAVKL N++ K G VL +DK PIYPI+GA +LS
Sbjct: 73 ILEPGKIVIDCGAAPGSWTQVAVKLTNANA-KQKSAIGTVLGIDKQPIYPIEGATLLSGM 131
Query: 118 DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG 177
DF Q++++ IL K++V LSDMAPNA+G+R++DH+ I +L + ++FA+
Sbjct: 132 DFMAATSQNKILNILNGRKVNVFLSDMAPNASGIRDLDHENIMKLVYSALKFALQIIHIN 191
Query: 178 ADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ K+WDG+ QLE+ +TRF+ VK ++P ++R S E FL+ R FKG
Sbjct: 192 GIFVCKLWDGKKSLQLEKDLTRFFKYVKNIRPKATRDESTEKFLIAREFKG 242
>gi|357617241|gb|EHJ70671.1| cell division protein ftsj [Danaus plexippus]
Length = 234
Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 114/210 (54%), Positives = 148/210 (70%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL RQ ADPYV+KAK NYRCRSAFKL+E++ K L PG V+D GA+PGSW+QV
Sbjct: 13 SSQQWLNRQKADPYVEKAKMCNYRCRSAFKLIEMNEKANILHPGQTVIDLGASPGSWTQV 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ N+ G DS +PKG VL+VDKL I+PI+GA ++S DF+ D+++ L K+D
Sbjct: 73 AVQKTNADGADSSKPKGTVLAVDKLQIFPIEGATIMSNLDFSTIQAHDKVLKALNGKKVD 132
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAP+ATG+RE+D D I L IRFA ++ + L K+WDG+ P LE +
Sbjct: 133 LVLSDMAPSATGVRELDKDRIIGLCYMAIRFAALVTRIDGNLLFKVWDGKEVPILEMDLE 192
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
RFY +KILKP +SRS S+E F+L RGFKG
Sbjct: 193 RFYKHIKILKPNASRSDSSEKFILARGFKG 222
>gi|195157182|ref|XP_002019475.1| GL12202 [Drosophila persimilis]
gi|194116066|gb|EDW38109.1| GL12202 [Drosophila persimilis]
Length = 249
Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 115/215 (53%), Positives = 148/215 (68%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK SS WL RQ ADPYV+KA+ NYRCRSAFKLLEID K K L+PG VLDCGAAPG
Sbjct: 31 KGKSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYKILKPGDAVLDCGAAPG 90
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ N+HG + P G V S+D L + + GA + DFT P Q RL L
Sbjct: 91 SWTQVAVERTNAHGKIERAPVGAVFSIDLLHFHAVPGATIYGGMDFTTPLSQQRLREALA 150
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A+ ++K+WD + P+L
Sbjct: 151 GRQVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQANLVVKVWDNGDVPKL 210
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E ++ +FY +VK +KP +SR SAE FL+ RG+KG
Sbjct: 211 ERNMLKFYEKVKRVKPRASRGDSAEHFLVARGYKG 245
>gi|347971392|ref|XP_313065.4| AGAP004177-PA [Anopheles gambiae str. PEST]
gi|333468647|gb|EAA08541.4| AGAP004177-PA [Anopheles gambiae str. PEST]
Length = 242
Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 151/215 (70%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK SS WL RQ DPYV++AK NYRCRSAFKLLEIDSK ++PG V+DCGA+PG
Sbjct: 25 KGKSKSSQEWLTRQLRDPYVERAKMMNYRCRSAFKLLEIDSKYGLVKPGHTVIDCGASPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+Q+AVK N+ G +PKG+V+ VD L IYPI+ A++ DF + + QD++ L
Sbjct: 85 SWTQIAVKQSNADGGLPGKPKGMVVGVDLLQIYPIEHAILFGNSDFLRKETQDKIRASLG 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ ++D VLSDMAPNA+G+R +D + IT L AV+RFA+ S P A L+K+WD + P+L
Sbjct: 145 ERRVDCVLSDMAPNASGIRALDQENITTLCYAVLRFAILMSTPNASLLMKVWDNGDVPKL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E+SI +Y VK +KP +SR SAE F+L RGF G
Sbjct: 205 EKSILEYYKTVKRVKPRASRDDSAENFILARGFVG 239
>gi|195054507|ref|XP_001994166.1| GH16178 [Drosophila grimshawi]
gi|193896036|gb|EDV94902.1| GH16178 [Drosophila grimshawi]
Length = 249
Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 117/215 (54%), Positives = 148/215 (68%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL RQ ADPYV+KA+ NYRCRSAFKLLE+D K K L+PG VLDCGAAPG
Sbjct: 34 KGRSKSSQDWLTRQLADPYVEKARMLNYRCRSAFKLLEMDDKYKILKPGDLVLDCGAAPG 93
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ N++G + P+G V S+D L + + GA + DFT P Q RL L
Sbjct: 94 SWTQVAVERTNANGKIERAPRGAVYSIDLLHFHAVPGATIFGGMDFTAPLAQQRLRESLA 153
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A+ ++KIWD + P+L
Sbjct: 154 DRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPHANLVVKIWDNGDVPKL 213
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E I +Y +VK +KP +SR SAE FLL RGFKG
Sbjct: 214 ERDILSYYEKVKRVKPRASRGDSAEHFLLARGFKG 248
>gi|21356387|ref|NP_650835.1| CG11447 [Drosophila melanogaster]
gi|9910869|sp|Q9VDT6.1|RRMJ1_DROME RecName: Full=Putative ribosomal RNA methyltransferase CG11447;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|7300552|gb|AAF55704.1| CG11447 [Drosophila melanogaster]
gi|17945992|gb|AAL49040.1| RE49934p [Drosophila melanogaster]
gi|220957638|gb|ACL91362.1| CG11447-PA [synthetic construct]
gi|220960190|gb|ACL92631.1| CG11447-PA [synthetic construct]
Length = 250
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 146/215 (67%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL RQ ADPYV+KA+ NYRCRSAFKLLEID K LRPG VL+CGAAPG
Sbjct: 32 KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYGILRPGDTVLECGAAPG 91
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ N++G + P+G V S+D L + + GA + DFT Q RL L+
Sbjct: 92 SWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSSLAQKRLREALQ 151
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A ++K+WD + P+L
Sbjct: 152 DRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVVKVWDNGDVPKL 211
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E + RFY +VK +KP +SR SAE FL+ R FKG
Sbjct: 212 ERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFKG 246
>gi|194899901|ref|XP_001979496.1| GG23538 [Drosophila erecta]
gi|190651199|gb|EDV48454.1| GG23538 [Drosophila erecta]
Length = 250
Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 115/215 (53%), Positives = 145/215 (67%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL RQ ADPYV+KA+ NYRCRSAFKLLEID K LRPG VLDCGAAPG
Sbjct: 32 KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYGILRPGGTVLDCGAAPG 91
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ N++G + +G V S+D L + + GA + DFT Q RL L+
Sbjct: 92 SWTQVAVERTNANGKQERAAQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQMRLKEALQ 151
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A ++K+WD + P+L
Sbjct: 152 DRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVVKVWDNGDVPKL 211
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E + RFY +VK +KP +SR SAE FLL R FKG
Sbjct: 212 ERDMLRFYEKVKRIKPRASRGDSAEHFLLARNFKG 246
>gi|198454814|ref|XP_001359736.2| GA11008 [Drosophila pseudoobscura pseudoobscura]
gi|198132965|gb|EAL28888.2| GA11008 [Drosophila pseudoobscura pseudoobscura]
Length = 249
Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 147/215 (68%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK SS WL RQ ADPYV+KA+ NYRCRSAFKLLEID K K L+ G VLDCGAAPG
Sbjct: 31 KGKSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYKILKTGDAVLDCGAAPG 90
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ N+HG + P G V S+D L + + GA + DFT P Q RL L
Sbjct: 91 SWTQVAVERTNAHGKMERAPVGAVFSIDLLHFHAVPGATIYGGMDFTTPLSQQRLREALA 150
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A+ ++K+WD + P+L
Sbjct: 151 GRQVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQANLVVKVWDNGDVPKL 210
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E ++ +FY +VK +KP +SR SAE FL+ RG+KG
Sbjct: 211 ERNMLKFYEKVKRVKPRASRGDSAEHFLVARGYKG 245
>gi|195482827|ref|XP_002086815.1| GE11211 [Drosophila yakuba]
gi|194186605|gb|EDX00217.1| GE11211 [Drosophila yakuba]
Length = 250
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 145/215 (67%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL RQ ADPYV+KA+ NYRCRSAFKLLEID K + LRPG VLDCGAAPG
Sbjct: 32 KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYEILRPGGTVLDCGAAPG 91
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ N++G + +G V S+D L + + GA + DFT Q RL L+
Sbjct: 92 SWTQVAVERTNANGKQKRASQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQKRLNEALQ 151
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A ++K+WD + P+L
Sbjct: 152 HRKVNCVLSDMAPNATGVRMLDQESITNLCYEVVRFALAMSAPQAHLVVKVWDNGDVPKL 211
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E + RFY +VK +KP +SR SAE FL+ R FKG
Sbjct: 212 ERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFKG 246
>gi|195498039|ref|XP_002096355.1| GE25629 [Drosophila yakuba]
gi|194182456|gb|EDW96067.1| GE25629 [Drosophila yakuba]
Length = 250
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 145/215 (67%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL RQ ADPYV+KA+ NYRCRSAFKLLEID K + LRPG VLDCGAAPG
Sbjct: 32 KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYEILRPGGTVLDCGAAPG 91
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ N++G + +G V S+D L + + GA + DFT Q RL L+
Sbjct: 92 SWTQVAVERTNANGKQKRASQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQKRLNEALQ 151
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A ++K+WD + P+L
Sbjct: 152 HRKVNCVLSDMAPNATGVRMLDQESITNLCYEVVRFALAMSAPQAHLVVKVWDNGDVPKL 211
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E + RFY +VK +KP +SR SAE FL+ R FKG
Sbjct: 212 ERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFKG 246
>gi|347971390|ref|XP_003436733.1| AGAP013223-PA [Anopheles gambiae str. PEST]
gi|333468646|gb|EGK97007.1| AGAP013223-PA [Anopheles gambiae str. PEST]
Length = 242
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/215 (52%), Positives = 150/215 (69%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK SS WL RQ DPYV++AK NYRCRSAFKLLEID+K ++PG V+DCGA+PG
Sbjct: 25 KGKSKSSQEWLTRQLRDPYVERAKMMNYRCRSAFKLLEIDNKYGLVKPGHTVIDCGASPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+Q+AVK N+ +PKG+V+ VD L IYPI+ A++ DF + + QD++ L
Sbjct: 85 SWTQIAVKQSNADEGLPGKPKGMVVGVDLLQIYPIEHAILFGNSDFLRKETQDKIRASLG 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ ++D VLSDMAPNA+G+R +D + IT L AV+RFA+ S P A L+K+WD + P+L
Sbjct: 145 ERRVDCVLSDMAPNASGIRALDQENITTLCYAVLRFAILMSTPNASLLMKVWDNGDVPKL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E+SI +Y VK +KP +SR SAE F+L RGF G
Sbjct: 205 EKSILEYYKTVKRVKPRASRDDSAENFILARGFVG 239
>gi|194741340|ref|XP_001953147.1| GF17621 [Drosophila ananassae]
gi|190626206|gb|EDV41730.1| GF17621 [Drosophila ananassae]
Length = 254
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/215 (52%), Positives = 145/215 (67%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL RQ ADPYV+KA+ NYRCRSAFKLLE+D K LRPG VLDCGAAPG
Sbjct: 32 KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEMDDKYGILRPGDTVLDCGAAPG 91
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ N++G + P+G V S+D L + + GA + DFT Q RL L
Sbjct: 92 SWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSTLAQKRLRESLN 151
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A ++K+WD + P+L
Sbjct: 152 GRQVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFAIAMSAPQAHLVVKVWDNGDVPKL 211
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E ++ RFY +VK +KP +SR SAE FL+ R FKG
Sbjct: 212 ESNMLRFYEKVKRVKPRASRGDSAEHFLVARSFKG 246
>gi|195112102|ref|XP_002000615.1| GI22429 [Drosophila mojavensis]
gi|193917209|gb|EDW16076.1| GI22429 [Drosophila mojavensis]
Length = 254
Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 145/215 (67%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK SS WL RQ ADPYV+KA+ N+RCRSAFKLLE+D K K L+PG VLDCGAAPG
Sbjct: 34 KGKSKSSQDWLTRQLADPYVEKARMLNFRCRSAFKLLEMDDKYKILKPGDVVLDCGAAPG 93
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVA + N++G + P+G V S+D L + + GA + DFT P Q RL L
Sbjct: 94 SWTQVAAERTNANGKTERMPRGAVYSIDLLHFHAVPGATIFGGMDFTSPLAQQRLRESLA 153
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A+ ++KIWD + P+L
Sbjct: 154 GRSVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQANLVVKIWDNGDVPKL 213
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E I +Y +VK +KP +SR SAE FLL RGFKG
Sbjct: 214 ERDILCYYEKVKRVKPRASRGDSAEHFLLARGFKG 248
>gi|195569596|ref|XP_002102795.1| GD19317 [Drosophila simulans]
gi|194198722|gb|EDX12298.1| GD19317 [Drosophila simulans]
Length = 250
Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 112/216 (51%), Positives = 146/216 (67%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL RQ ADPYV+KA+ NYRCRSAFKLLEID K L+PG VL+CGAAPG
Sbjct: 32 KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYGILQPGDTVLECGAAPG 91
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ N++G + P+G V S+D L + + GA + DFT Q RL L+
Sbjct: 92 SWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQKRLREALQ 151
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A ++K+WD + P+L
Sbjct: 152 HRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVVKVWDNGDVPKL 211
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
E + RFY +VK +KP +SR SAE FL+ R FKG+
Sbjct: 212 ERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFKGE 247
>gi|321464186|gb|EFX75196.1| hypothetical protein DAPPUDRAFT_306870 [Daphnia pulex]
Length = 242
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/225 (52%), Positives = 152/225 (67%)
Query: 3 STTGPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
ST K+ + KG+ SS WL RQ D YV KAK ENYR RSAFKL+EID K KFL+PG
Sbjct: 15 STCFKKVPDRLKGRSKSSQEWLTRQMNDEYVLKAKMENYRARSAFKLIEIDDKHKFLKPG 74
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
V++CGAAPG+W+QV VK +N+ G S Q KG ++VD P+YPI+GAV+L+ DFT+
Sbjct: 75 DVVVECGAAPGAWTQVCVKRINATGKVSSQLKGKHVAVDLQPMYPIEGAVILAPLDFTKS 134
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
Q R+ IL + VLSDMAP A+G+R++D D I +LA +V+R+A S GA LI
Sbjct: 135 LSQTRITEILGGQLANAVLSDMAPAASGIRDLDQDRILELAYSVLRYAQQISMDGATLLI 194
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
K+W G QLE I YSQVK++KPPSSR SAE+F+L FK
Sbjct: 195 KLWAGGRIKQLENEIALHYSQVKVVKPPSSRQDSAEMFILASNFK 239
>gi|195450132|ref|XP_002072378.1| GK22358 [Drosophila willistoni]
gi|194168463|gb|EDW83364.1| GK22358 [Drosophila willistoni]
Length = 249
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 148/215 (68%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK SS WL RQ +DPYV+KA NYRCRSAFKLLEID K ++PG V+DCGAAPG
Sbjct: 34 KGKSKSSQEWLTRQLSDPYVEKAHMMNYRCRSAFKLLEIDDKYHLMQPGYTVIDCGAAPG 93
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ N++G K+P G V+S+D L + + GAV+ DFT Q RL L
Sbjct: 94 SWTQVAVERTNANGKQEKKPLGSVISIDLLHFHAVPGAVIYGGMDFTSAVAQQRLKESLA 153
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A+ ++K+WD + P+L
Sbjct: 154 GRRVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSGPDANLVVKVWDNGDVPKL 213
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E+++ + Y +VK +KP +SR SAE FL+ RGF+G
Sbjct: 214 EKTMLQHYEKVKRVKPRASRGDSAEHFLVARGFRG 248
>gi|195353572|ref|XP_002043278.1| GM26867 [Drosophila sechellia]
gi|194127392|gb|EDW49435.1| GM26867 [Drosophila sechellia]
Length = 250
Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 144/215 (66%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL RQ DPYV+KA+ NYRCRSAFKLLEID K L+PG VL+CGAAPG
Sbjct: 32 KGRSKSSQEWLTRQLTDPYVEKARMMNYRCRSAFKLLEIDDKYGILQPGDTVLECGAAPG 91
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ N++G + P+G V S+D L + + GA + DFT Q RL ++
Sbjct: 92 SWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTTSLAQKRLREAVQ 151
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A ++K+WD + P+L
Sbjct: 152 HRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVVKVWDNGDVPKL 211
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E + RFY +VK +KP +SR SAE FL+ R FKG
Sbjct: 212 ERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFKG 246
>gi|195395790|ref|XP_002056517.1| GJ10992 [Drosophila virilis]
gi|194143226|gb|EDW59629.1| GJ10992 [Drosophila virilis]
Length = 254
Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/215 (52%), Positives = 145/215 (67%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK SS WL RQ ADPYV+KA+ N+RCRSAFKLLE+D K K L+PG VLDCGAAPG
Sbjct: 34 KGKSKSSQDWLIRQLADPYVEKARMLNFRCRSAFKLLEMDDKYKILKPGDVVLDCGAAPG 93
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVA + N++G + P+G V S+D L + + GA + DFT P Q RL L
Sbjct: 94 SWTQVAAERTNANGKVERAPRGAVYSIDLLHFHAVPGATIFGGMDFTTPLAQQRLRESLA 153
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+++ VLSDMAPNATG+R +D + IT L V++FA+ S P A+ ++KIWD + P+L
Sbjct: 154 GRQVNCVLSDMAPNATGVRMLDQESITNLCYEVLKFALAMSAPQANLVVKIWDNGDVPKL 213
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E I Y +VK +KP +SR SAE FLL RG+KG
Sbjct: 214 ERDILCHYEKVKRVKPRASRGDSAEHFLLARGYKG 248
>gi|395514749|ref|XP_003761575.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Sarcophilus
harrisii]
Length = 246
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 142/215 (66%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK + HLWL RQ DP+V+ AK ENYRCRSAFKLLEI+ K + RPGL+VLDCGAAPG
Sbjct: 25 KGKTATEHLWLMRQLKDPFVKAAKVENYRCRSAFKLLEINEKHQIFRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L ++P++GA+ L D T P ++ L
Sbjct: 85 AWSQVAVQKVNAAGTDPTSPAGFVLGVDLLHVFPLEGAIFLCSADVTDPRTFKKIQEQLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DV+LSDMAPNATG RE+DH + + ++++ FA + PG L K WDG R L
Sbjct: 145 GQKADVILSDMAPNATGFRELDHQKLINMCLSLLNFASSILHPGGTFLCKFWDGGQRHLL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + + V+ +KP +SR S+E++ L + ++G
Sbjct: 205 QNRLEKEFQNVRTIKPVASRKESSEVYFLAKLYRG 239
>gi|344239698|gb|EGV95801.1| Putative ribosomal RNA methyltransferase 2 [Cricetulus griseus]
Length = 245
Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 144/215 (66%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWLKR DP+V+ AK E+YRCRSAFKL+ I+ K LRPGL+VLDCGAAPG
Sbjct: 25 KGRTGAEHLWLKRHLKDPFVKAAKVESYRCRSAFKLMAINEKHHILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P + R++ +L
Sbjct: 85 AWSQVAVQRVNATGTDCSSPVGYVLGVDLLHIFPLEGATFLCPADVTDPGTRQRILDLLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DV+LSDMAPNATG+R++DHD + L + ++ AV PG L K W GR L
Sbjct: 145 RRKADVILSDMAPNATGIRDLDHDRLISLCLTLVDMAVDILHPGGTLLCKTWAGRKSHLL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ +T+ + +++KP +SR S+E++LL ++G
Sbjct: 205 QKRLTQEFQNTRVVKPEASRKESSEVYLLATQYRG 239
>gi|354467826|ref|XP_003496369.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Cricetulus griseus]
Length = 341
Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 144/215 (66%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWLKR DP+V+ AK E+YRCRSAFKL+ I+ K LRPGL+VLDCGAAPG
Sbjct: 121 KGRTGAEHLWLKRHLKDPFVKAAKVESYRCRSAFKLMAINEKHHILRPGLRVLDCGAAPG 180
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P + R++ +L
Sbjct: 181 AWSQVAVQRVNATGTDCSSPVGYVLGVDLLHIFPLEGATFLCPADVTDPGTRQRILDLLP 240
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DV+LSDMAPNATG+R++DHD + L + ++ AV PG L K W GR L
Sbjct: 241 RRKADVILSDMAPNATGIRDLDHDRLISLCLTLVDMAVDILHPGGTLLCKTWAGRKSHLL 300
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ +T+ + +++KP +SR S+E++LL ++G
Sbjct: 301 QKRLTQEFQNTRVVKPEASRKESSEVYLLATQYRG 335
>gi|13386002|ref|NP_080786.1| putative ribosomal RNA methyltransferase 2 [Mus musculus]
gi|81880352|sp|Q9CPY0.1|RRMJ2_MOUSE RecName: Full=Putative ribosomal RNA methyltransferase 2; AltName:
Full=Protein ftsJ homolog 2; AltName: Full=rRNA
(uridine-2'-O-)-methyltransferase
gi|12844585|dbj|BAB26420.1| unnamed protein product [Mus musculus]
gi|12856472|dbj|BAB30680.1| unnamed protein product [Mus musculus]
gi|26346843|dbj|BAC37070.1| unnamed protein product [Mus musculus]
gi|40555804|gb|AAH64776.1| FtsJ homolog 2 (E. coli) [Mus musculus]
gi|74219034|dbj|BAE26662.1| unnamed protein product [Mus musculus]
gi|148687177|gb|EDL19124.1| FtsJ homolog 2 (E. coli) [Mus musculus]
Length = 246
Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 143/215 (66%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + HLWL R DP+V+ AK E+YRCRSAFKLLE++ K + LRPGL+VLDCGAAPG
Sbjct: 25 RGRTGAEHLWLTRHLKDPFVKAAKVESYRCRSAFKLLEMNEKHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G DS P G VL VD L I+P+ GA L D T P +++ +L
Sbjct: 85 AWSQVAVQRVNATGADSSSPVGFVLGVDLLHIFPLAGATFLCPADVTDPRTFQKILELLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R++DHD + L + ++ AV PG L K W G L
Sbjct: 145 SRRADVILSDMAPNATGIRDLDHDKLISLCLTLVDMAVDILHPGGTLLCKTWAGSKSHLL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ +T+ + +++KP +SR S+E++LL ++G
Sbjct: 205 QKRLTQEFQSTRVVKPEASRKESSEVYLLATQYRG 239
>gi|157820165|ref|NP_001100595.1| putative ribosomal RNA methyltransferase 2 [Rattus norvegicus]
gi|149035019|gb|EDL89739.1| rCG42633 [Rattus norvegicus]
Length = 246
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 141/216 (65%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWL R DP+V+ AK E+YRCRSAFKLLE++ K LRPGL+VLDCGAAPG
Sbjct: 25 KGRTGAEHLWLMRHLKDPFVKAAKAESYRCRSAFKLLEMNEKHHILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G DS P G VL VD L ++P+ GA L D T P R++ +L
Sbjct: 85 AWSQVAVQSVNATGADSSSPMGFVLGVDLLHMFPLAGATFLCPADVTDPRTFQRILELLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R++DHD + L + ++ AV PG L K W G L
Sbjct: 145 RRRADVILSDMAPNATGIRDLDHDRLISLCLTLVDMAVDILHPGGTLLCKTWAGSKSHLL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
++ + + + +++KP +SR SAE++LL + G+
Sbjct: 205 QKRLAQEFRSTRVVKPEASRKESAEVYLLATQYHGR 240
>gi|118097774|ref|XP_414772.2| PREDICTED: putative ribosomal RNA methyltransferase 2 [Gallus
gallus]
Length = 244
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 144/216 (66%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K K + + WL+RQ+ DP+V+ AK+++YRCRSAFKLLEID K+ LRPGL VLDCGAAPG
Sbjct: 29 KKKTATENWWLERQWRDPFVKAAKQQHYRCRSAFKLLEIDDKLHILRPGLSVLDCGAAPG 88
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G V+ VD L I P++GAV LS+ D T P Q + +L
Sbjct: 89 AWSQVAVERVNALGTDPAAPTGFVIGVDLLRISPLEGAVFLSQADITDPGTQRAIQNLLP 148
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+K+DV+LSDMAPNATG++E+DH + L + ++ + + KP L K WDG L
Sbjct: 149 AEKVDVILSDMAPNATGIKELDHQKLISLCLGLVNLSQSILKPKGTMLCKFWDGHESRVL 208
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V+ +KP +SR S+E + L R +KGK
Sbjct: 209 QNKLKEQFQDVRTIKPQASRKDSSESYYLARLYKGK 244
>gi|297679750|ref|XP_002817683.1| PREDICTED: putative ribosomal RNA methyltransferase 2 isoform 1
[Pongo abelii]
Length = 246
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 139/216 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 85 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +PG L K W G QL
Sbjct: 145 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRQL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L + G+
Sbjct: 205 QRRLTEEFQNVRIIKPEASRRESSEVYFLATQYHGR 240
>gi|344289813|ref|XP_003416635.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Loxodonta africana]
Length = 260
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 143/215 (66%)
Query: 13 PKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAP 72
PKG+ + HLWL R DP+V+ AK E+YRCRSAFKLLE+D + + LRPGL+VLDCGAAP
Sbjct: 38 PKGRTGAEHLWLMRHLKDPFVKAAKVESYRCRSAFKLLEVDERHRILRPGLRVLDCGAAP 97
Query: 73 GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL 132
G+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R+ +L
Sbjct: 98 GAWSQVAVQSVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTFQRIRELL 157
Query: 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
+ DV+LSDMAPNATG+R++DH+ + L +++ A PG L KIW G +
Sbjct: 158 PGHRADVILSDMAPNATGIRDLDHNRLISLCWSLLDLAQHILHPGGTFLCKIWTGSQTHR 217
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
L++ +T+ + ++ +KP +SR S+E++LL ++
Sbjct: 218 LQKRLTQEFQSMRTIKPNASRKESSEVYLLATQYR 252
>gi|403285663|ref|XP_003934133.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Saimiri
boliviensis boliviensis]
Length = 373
Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 141/216 (65%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE++ K + LRPGL+VLDCGAAPG
Sbjct: 152 KKRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEMNEKHQILRPGLRVLDCGAAPG 211
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 212 AWSQVAVRKVNATGTDLSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILELLP 271
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R++DHD + L ++++ PG L K W G QL
Sbjct: 272 GGRADVILSDMAPNATGVRDLDHDRLISLCLSLLGMTPDILHPGGTFLCKTWAGSQSRQL 331
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L ++G+
Sbjct: 332 QRRLTEEFQSVRIIKPEASRKESSEVYFLATQYRGR 367
>gi|348509376|ref|XP_003442225.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Oreochromis niloticus]
Length = 239
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/214 (48%), Positives = 143/214 (66%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK + WL+RQ DPYV+ ++ +N+RCRSAFKLLEID K + L+PG V+DCGAAPG
Sbjct: 22 KGKTPAEQRWLRRQLKDPYVKASQAQNFRCRSAFKLLEIDDKFRLLQPGYAVVDCGAAPG 81
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VNS D + P+G+V+ +D L I P+DGA LS CD T P +L+ +L
Sbjct: 82 AWSQVAVQRVNSAVTDPELPRGMVVGIDLLNIPPLDGAHFLSSCDVTDPATHAKLLELLP 141
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K V+LSDMAPNA+G REMDH+ + + +++I A +P L K WDG +L
Sbjct: 142 HGKAHVILSDMAPNASGFREMDHERLITMCLSLIDLAEKILQPQGSLLCKYWDGILAHKL 201
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+E+++ +S V+ LKP SSR SAE + L R F+
Sbjct: 202 QETLSSVFSSVRTLKPDSSRKDSAERYFLARMFR 235
>gi|397498005|ref|XP_003819788.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Pan
paniscus]
Length = 246
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 139/216 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 85 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +PG L K W G +L
Sbjct: 145 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L + G+
Sbjct: 205 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 240
>gi|90652009|gb|AAI14565.1| FTSJ2 protein [Homo sapiens]
Length = 240
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 139/216 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 19 KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 78
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 79 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 138
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +PG L K W G +L
Sbjct: 139 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRL 198
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L + G+
Sbjct: 199 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 234
>gi|114611931|ref|XP_518934.2| PREDICTED: uncharacterized protein LOC463224 [Pan troglodytes]
gi|332864346|ref|XP_003318261.1| PREDICTED: uncharacterized protein LOC463224 [Pan troglodytes]
gi|410207272|gb|JAA00855.1| FtsJ homolog 2 [Pan troglodytes]
gi|410253422|gb|JAA14678.1| FtsJ homolog 2 [Pan troglodytes]
gi|410293628|gb|JAA25414.1| FtsJ homolog 2 [Pan troglodytes]
gi|410334097|gb|JAA35995.1| FtsJ homolog 2 [Pan troglodytes]
Length = 246
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 139/216 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 85 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +PG L K W G +L
Sbjct: 145 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L + G+
Sbjct: 205 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 240
>gi|7019377|ref|NP_037525.1| putative ribosomal RNA methyltransferase 2 [Homo sapiens]
gi|9910866|sp|Q9UI43.1|RRMJ2_HUMAN RecName: Full=Putative ribosomal RNA methyltransferase 2; AltName:
Full=Protein ftsJ homolog 2; AltName: Full=rRNA
(uridine-2'-O-)-methyltransferase
gi|6652820|gb|AAF22488.1|AF093415_1 cell division protein FtsJ [Homo sapiens]
gi|119607629|gb|EAW87223.1| hCG17134, isoform CRA_b [Homo sapiens]
gi|119607630|gb|EAW87224.1| hCG17134, isoform CRA_b [Homo sapiens]
Length = 246
Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 139/216 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 85 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +PG L K W G +L
Sbjct: 145 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L + G+
Sbjct: 205 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 240
>gi|296193362|ref|XP_002744485.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Callithrix
jacchus]
Length = 246
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 139/216 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEMNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I P++GA L D T P R++ +L
Sbjct: 85 AWSQVAVRKVNATGTDLSSPVGFVLGVDLLHILPLEGATFLCPADVTDPRTSQRILELLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R++DHD + L ++++ PG L K W G QL
Sbjct: 145 GGRADVILSDMAPNATGVRDLDHDRLISLCLSLLGMTPDILHPGGTFLCKTWAGSQSRQL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L + G+
Sbjct: 205 QSRLTEEFQSVRIIKPEASRKESSEMYFLATQYHGR 240
>gi|348568364|ref|XP_003469968.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Cavia
porcellus]
Length = 255
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 137/214 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWL R DPYV+ AK E YRCRSAFKLLEI+ K K LRPGL+VLDCGAAPG
Sbjct: 34 KGRTGTEHLWLMRHLKDPYVKAAKVECYRCRSAFKLLEINKKHKILRPGLRVLDCGAAPG 93
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 94 AWSQVAVPRVNATGTDPSSPVGFVLGVDLLHIHPLEGATFLCPADVTNPKTFQRIMELLP 153
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DV+LSDMAPNATG+R++DHD + + + ++ A PG L KIW G L
Sbjct: 154 GGKADVILSDMAPNATGIRDLDHDRLISMCLTLLDMAPDILHPGGTLLCKIWAGSRSHWL 213
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ +T + + +KP +SR S+E++ L ++
Sbjct: 214 QKRLTEEFQSTRNIKPEASRKESSEVYFLATQYR 247
>gi|334332792|ref|XP_001379067.2| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Monodelphis domestica]
Length = 246
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 137/215 (63%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+GK + HLWL R DP+V+ AK ENYRCRSAFKLLEI+ K + PGL+VLDCGAAPG
Sbjct: 25 RGKTATEHLWLTRHLKDPFVKAAKVENYRCRSAFKLLEINEKHQIFHPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D G VL VD L I+P++GA+ L D T D++ L
Sbjct: 85 AWSQVAVQKVNAAGTDPNSSVGFVLGVDLLHIFPLEGAIFLCPADVTDSRTFDKIQEQLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DV+LSDMAPNATG+RE+DH + + ++++ F + PG L K WDG R L
Sbjct: 145 GQKADVILSDMAPNATGIRELDHQNLISMCLSLLNFTSSILLPGGTFLCKFWDGSQRHLL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + + V+ +KP +SR S+E + L + + G
Sbjct: 205 QNRLEKEFQNVRTIKPKASRKESSETYFLAKSYLG 239
>gi|390341347|ref|XP_787303.2| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Strongylocentrotus purpuratus]
Length = 269
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 144/214 (67%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K K HSS W+ R DP+V++A+ ++YR RSA+KLLEIDS+ + L+PG V+DCGAAPG
Sbjct: 48 KNKSHSSQQWINRHVNDPFVKQARADSYRARSAYKLLEIDSRYRLLKPGNTVIDCGAAPG 107
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ NS + +P+G+V++VD L + PI+GA++L + DFT P +Q+R++ L
Sbjct: 108 SWTQVAVERTNSALQNPAKPRGIVIAVDLLHMQPIEGAIMLGQSDFTDPAVQERILGHLD 167
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D VLSDMAPNATG+ MDH+ I LA + FA L+K+WDG + L
Sbjct: 168 KRLSDAVLSDMAPNATGIHAMDHEQIIALARTAMGFATKVLCENGHFLVKLWDGHDTGLL 227
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + VKIL+P +SR S+E+FLL +GFK
Sbjct: 228 KRDLVESFRSVKILRPEASRKESSEIFLLAQGFK 261
>gi|89365951|gb|AAI14515.1| FtsJ homolog 2 (E. coli) [Homo sapiens]
Length = 246
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 138/216 (63%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + LRP L+VLDCGAAPG
Sbjct: 25 KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPSLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 85 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +PG L K W G +L
Sbjct: 145 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L + G+
Sbjct: 205 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 240
>gi|327282720|ref|XP_003226090.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Anolis
carolinensis]
Length = 241
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 143/216 (66%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K K + H WL+R F+DPYV+KA++ +YRCRSAFKL+EID K LRPGL V+DCG APG
Sbjct: 25 KAKTGAEHRWLERHFSDPYVKKARQRSYRCRSAFKLIEIDDKHGILRPGLHVVDCGTAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+W+QVAV+ VN+ G D P G VL D L I P++GAV L D T P + ++ L
Sbjct: 85 AWAQVAVQRVNAEGSDPDTPVGFVLGFDLLHISPLEGAVFLPHSDLTDPSTRQKIRDSLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DVVLSDMAPNATG+RE+DHD + +L ++++ A PG L K W+ + L
Sbjct: 145 KGKADVVLSDMAPNATGIRELDHDRLIRLCLSLLDLAPHILHPGGTLLCKFWESKESRLL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
++ +T+ + +VK +KP +SR SAE++ L + +K +
Sbjct: 205 QKRLTQDFKEVKSIKPQASRKESAEMYYLAKLYKSR 240
>gi|351706077|gb|EHB08996.1| Putative ribosomal RNA methyltransferase 2, partial [Heterocephalus
glaber]
Length = 243
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 139/214 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWL R DPYV+ AK E YRCRSAFKLLE++ K LRPGL+VLDCGAAPG
Sbjct: 22 KGRTGAEHLWLMRHLKDPYVKAAKVECYRCRSAFKLLEMNEKHGILRPGLRVLDCGAAPG 81
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA LS D T P R++ +L
Sbjct: 82 AWSQVAVQRVNATGADPSFPVGFVLGVDLLHIHPLEGATFLSPADVTDPRTFQRIMELLP 141
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DV+LSDMAPNATG+R++DHD + + ++++ A PG L K W G +L
Sbjct: 142 CGKADVILSDMAPNATGIRDLDHDRLISMCLSLLDMAPDILHPGGTVLCKTWAGSQSRRL 201
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ +T + + +KP +SR S+E++ L ++
Sbjct: 202 QKRLTEEFQNTRTIKPEASRKESSEVYFLATQYR 235
>gi|441662994|ref|XP_003278759.2| PREDICTED: putative ribosomal RNA methyltransferase 2 [Nomascus
leucogenys]
Length = 243
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 136/210 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 85 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +PG L K W G +L
Sbjct: 145 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSLSRRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLG 223
+ +T + V+I+KP +SR S+E++ L
Sbjct: 205 QRRLTEEFQNVRIMKPEASRKESSEVYFLA 234
>gi|296080816|ref|NP_001171683.1| FtsJ RNA methyltransferase homolog 2 [Sus scrofa]
gi|197281890|gb|ACH57152.1| FtsJ-like protein 2 [Sus scrofa]
Length = 245
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 140/215 (65%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWL R DP+V+ +K E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KGRTAAEHLWLARHLKDPFVKASKVESYRCRSAFKLLEMNERHRILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D+ P G VL VD L I P++GA L D T P R+ +L
Sbjct: 85 AWSQVAVQRVNAAGTDATAPVGFVLGVDLLHILPLEGATFLCPADVTDPRTFQRIRDLLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DV+LSDMAPNATG+R +DHD + L ++++ A P L KIW G +L
Sbjct: 145 GGKADVILSDMAPNATGIRGLDHDRLISLCLSLLDMAPDVLHPRGAFLCKIWAGSQSHRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ +T + + +KP +SR S+EL+LL ++G
Sbjct: 205 QKRLTEAFQNTRTVKPAASRKESSELYLLATRYQG 239
>gi|355560417|gb|EHH17103.1| hypothetical protein EGK_13415, partial [Macaca mulatta]
Length = 289
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 138/216 (63%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK +YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 68 KNRTGAEHLWLTRHLRDPFVKAAKVASYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 127
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 128 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 187
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +P L K W G +L
Sbjct: 188 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSMTPDILQPRGTFLCKTWAGSQSHRL 247
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L ++G+
Sbjct: 248 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYQGR 283
>gi|345801372|ref|XP_003434808.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Canis lupus
familiaris]
Length = 246
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 137/214 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWL R DPYV+ AK E+YRCRSAFKLLE+D + + LRPGL+VLDCGAAPG
Sbjct: 25 KGRTGAEHLWLTRHLKDPYVKAAKVESYRCRSAFKLLEMDERHRILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R+ +L
Sbjct: 85 AWSQVAVQRVNAAGTDPGTPVGFVLGVDLLHIFPLEGATFLCPADVTDPGTLQRIQELLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+ +DHD + +L + ++ A PG L K W G L
Sbjct: 145 GGRADVILSDMAPNATGIHSLDHDRLIRLCLFLLDLAADVLHPGGTFLCKTWAGSQSLAL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ +T + + +KP +SR S+E++LL ++
Sbjct: 205 QKRLTGQFQSTRTIKPRASRKESSEVYLLATQYQ 238
>gi|388453837|ref|NP_001253821.1| putative ribosomal RNA methyltransferase 2 [Macaca mulatta]
gi|387539254|gb|AFJ70254.1| putative ribosomal RNA methyltransferase 2 [Macaca mulatta]
Length = 246
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 138/216 (63%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK +YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KNRTGAEHLWLTRHLRDPFVKAAKVASYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 85 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +P L K W G +L
Sbjct: 145 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSMTPDILQPRGTFLCKTWAGSQSHRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L ++G+
Sbjct: 205 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYQGR 240
>gi|355747471|gb|EHH51968.1| hypothetical protein EGM_12319, partial [Macaca fascicularis]
Length = 245
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 138/216 (63%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK +YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 24 KNRTGAEHLWLTRHLRDPFVKAAKVASYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 83
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 84 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 143
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +P L K W G +L
Sbjct: 144 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSMTPDILQPRGTFLCKTWAGSQSHRL 203
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L ++G+
Sbjct: 204 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYQGR 239
>gi|355733549|gb|AES11072.1| putative ribosomal RNA methyltransferase 2-like protein [Mustela
putorius furo]
Length = 237
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 137/214 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWL R F DP+V+ AK E+YRCRSAFKLLE+D + K LRPGL+VLDCGAAPG
Sbjct: 22 KGRTGAEHLWLTRHFKDPFVKAAKVESYRCRSAFKLLEVDDRHKILRPGLRVLDCGAAPG 81
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L ++P++GA L D T P R+ +L
Sbjct: 82 AWSQVAVQRVNAAGTDPSAPVGFVLGVDLLHVFPLEGATFLCPADVTDPRTLQRIRELLP 141
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R +DHD + L +++ +PG L K W G L
Sbjct: 142 GGRADVILSDMAPNATGIRSLDHDRLIGLCSSLLDLTPDVLEPGGTFLCKTWAGSQSLAL 201
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +T + + +KP +SR SAE++LL ++
Sbjct: 202 RKRLTGQFQNTRTVKPRASRKESAEVYLLATQYQ 235
>gi|380812210|gb|AFE77980.1| putative ribosomal RNA methyltransferase 2 [Macaca mulatta]
gi|383417859|gb|AFH32143.1| putative ribosomal RNA methyltransferase 2 [Macaca mulatta]
Length = 246
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 138/216 (63%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK +YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KNRTGAEHLWLTRHLRDPFVKAAKVASYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 85 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +P L K W G +L
Sbjct: 145 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSMTPDILQPRGTFLCKTWAGSQSHRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L ++G+
Sbjct: 205 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYQGR 240
>gi|148225294|ref|NP_001089803.1| FtsJ RNA methyltransferase homolog 2 [Xenopus laevis]
gi|76779644|gb|AAI06596.1| MGC131369 protein [Xenopus laevis]
Length = 246
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 141/218 (64%)
Query: 10 KEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCG 69
+ + K + + WL RQ DPY+++A+ NYRCRSAFKLLEIDSK L PG V+DCG
Sbjct: 25 RALDKNRTAAEQKWLARQMKDPYIKEAQAHNYRCRSAFKLLEIDSKHHILHPGHHVIDCG 84
Query: 70 AAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV 129
AAPG+WSQVAV+ VNS G DS G V+ VD L I P+DGAV LS D T D Q +++
Sbjct: 85 AAPGAWSQVAVEKVNSLGRDSAARAGFVVGVDLLNITPLDGAVFLSNSDITDSDTQRKII 144
Query: 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
++L K DV+LSDMAPNATG+R++DH + + ++++ + PG L K+WDG
Sbjct: 145 SVLPSGKADVILSDMAPNATGIRDLDHQRLVNMCLSLLELSQRVLLPGGTFLCKVWDGSE 204
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + + + V+ +KP +SR SAE++LL + K
Sbjct: 205 ISLVRDRLRQRFQDVRTVKPKASRMESAEIYLLAKMHK 242
>gi|403285672|ref|XP_003934137.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Saimiri
boliviensis boliviensis]
Length = 380
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 139/216 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRC+S FKLLE++ K + LRPGL+VLDCGAAPG
Sbjct: 159 KKRTGAEHLWLTRHLRDPFVKAAKVESYRCQSTFKLLEMNEKHQILRPGLRVLDCGAAPG 218
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ V + G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 219 AWSQVAVRKVKAAGTDLSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILELLP 278
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R++DHD + L ++++ PG L K W G QL
Sbjct: 279 GGRADVILSDMAPNATGVRDLDHDRLISLCLSLLGMTPDILHPGGTFLCKTWAGSQSRQL 338
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L ++G+
Sbjct: 339 QRRLTEEFQSVRIIKPEASRKESSEVYFLATQYRGR 374
>gi|426355327|ref|XP_004045075.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Gorilla
gorilla gorilla]
gi|426355329|ref|XP_004045076.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Gorilla
gorilla gorilla]
Length = 246
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 136/210 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + L+PGL+VLDCGAAPG
Sbjct: 25 KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILQPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 85 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +PG L K W G +L
Sbjct: 145 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLG 223
+ +T + V+I+KP +SR S+E++ L
Sbjct: 205 QRRLTEEFQNVRIIKPEASRKESSEVYFLA 234
>gi|402862745|ref|XP_003895705.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Papio
anubis]
Length = 270
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 137/216 (63%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK +YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 49 KNRTGAEHLWLTRHLRDPFVKAAKVASYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 108
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ L
Sbjct: 109 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEALP 168
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +P L K W G +L
Sbjct: 169 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSMTPDILQPRGTFLCKTWAGSQSHRL 228
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L ++GK
Sbjct: 229 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYQGK 264
>gi|395845562|ref|XP_003795499.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Otolemur
garnettii]
Length = 246
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 138/213 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWL R D +V+ AK E+YRCRSAFKLLE++ K + LRPGL+VLDCGAAPG
Sbjct: 25 KGRTGAQHLWLSRHLRDSFVKAAKVESYRCRSAFKLLEVNEKHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VNS G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 85 AWSQVAVQRVNSAGTDPSSPIGFVLGVDLLHIFPLEGATFLCPADVTDPRTFQRVLELLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R++DHD + L ++++ A PG L K W G L
Sbjct: 145 GGRADVILSDMAPNATGIRDLDHDRLISLCLSLLDMAPDILHPGGTFLCKTWAGSQSHLL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
++ +T + +I+KP +SR S+E++ L +
Sbjct: 205 QKRLTEEFQNTRIIKPEASRKESSEVYFLATQY 237
>gi|402862751|ref|XP_003895708.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Papio
anubis]
Length = 245
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 137/216 (63%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK +YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 24 KNRTGAEHLWLTRHLRDPFVKAAKVASYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 83
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ L
Sbjct: 84 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEALP 143
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +P L K W G +L
Sbjct: 144 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSMTPDILQPRGTFLCKTWAGSQSHRL 203
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L ++GK
Sbjct: 204 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYQGK 239
>gi|402862747|ref|XP_003895706.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Papio
anubis]
gi|402862749|ref|XP_003895707.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Papio
anubis]
Length = 246
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 137/216 (63%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK +YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KNRTGAEHLWLTRHLRDPFVKAAKVASYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ L
Sbjct: 85 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEALP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +P L K W G +L
Sbjct: 145 GGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSMTPDILQPRGTFLCKTWAGSQSHRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L ++GK
Sbjct: 205 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYQGK 240
>gi|149755358|ref|XP_001492181.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Equus
caballus]
Length = 264
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/214 (46%), Positives = 138/214 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 43 KGRTGAEHLWLTRHLKDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 102
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R+ +L
Sbjct: 103 AWSQVAVQRVNAAGTDPGAPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTFQRIRELLP 162
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R +DHD + L ++++ A PG L K W G +L
Sbjct: 163 GGRADVILSDMAPNATGIRGLDHDRLISLCLSLLDLAPDTLCPGGTFLCKTWAGSQSHRL 222
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ +T + K +KP +SR S+E++ L ++
Sbjct: 223 QKRLTEEFQNTKTVKPEASRKESSEVYFLATQYR 256
>gi|149539804|ref|XP_001516553.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like, partial
[Ornithorhynchus anatinus]
Length = 243
Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 144/213 (67%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K + H WL R DP+V+ ++ NYRCRSAFKLLEI+ K + L PGL+VLDCGAAPG+W
Sbjct: 24 KTDAEHRWLSRHLKDPFVKATRENNYRCRSAFKLLEINEKQQILSPGLRVLDCGAAPGAW 83
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA+K+VN+ G D K P G VL VD L I+P++GA L D T I++R+ +L +
Sbjct: 84 SQVAIKMVNAAGTDPKSPIGFVLGVDLLHIFPLEGATFLCPADVTDSRIRERIQELLPER 143
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K DV+LSDMAPNATG++E+DH + + ++++ + + G L K+WDG + L+
Sbjct: 144 KADVILSDMAPNATGIKELDHQKLISMCLSLLDLSSSILISGGTFLCKLWDGGQKHLLQS 203
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + +V+I+KP +SR S+E++ L + ++G
Sbjct: 204 RLEQQFQEVRIIKPQASRKESSEMYFLAKFYQG 236
>gi|431903056|gb|ELK09236.1| Putative ribosomal RNA methyltransferase 2 [Pteropus alecto]
Length = 257
Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 99/214 (46%), Positives = 138/214 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE+D K + LRPGL+VLDCGAAPG
Sbjct: 39 KARTGAEHLWLTRHLKDPFVKAAKLESYRCRSAFKLLEVDEKHRILRPGLRVLDCGAAPG 98
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQV+V+ VN+ G + P G VL VD L I P++GA L + T P R+ +L
Sbjct: 99 AWSQVSVQRVNAAGTEPSTPVGFVLGVDLLHISPLEGATFLCPANVTDPGTFQRIQELLP 158
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R +DHD I L ++++ A PG L K W G +L
Sbjct: 159 GGRADVILSDMAPNATGIRGLDHDRIIGLCLSLLDMAPHILHPGGTFLCKTWAGSQSHRL 218
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ +T + +I+KP +SR S+E++LL ++
Sbjct: 219 QKRLTEEFQNTRIVKPEASRKESSEVYLLATQYR 252
>gi|225716246|gb|ACO13969.1| ribosomal RNA methyltransferase 2 [Esox lucius]
Length = 242
Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 145/229 (63%), Gaps = 3/229 (1%)
Query: 2 ISTTGPKLKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKF 58
+ T+ LK+ KGK + W+ RQ DP+V+ A NYRCRSAFKLLEID K K
Sbjct: 11 VHTSASLLKKAAHNLKGKSTADQRWIVRQLNDPFVEAAHVHNYRCRSAFKLLEIDDKYKL 70
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD 118
L+PG V+DCGAAPG+WSQVAV+ VNS G + P+G V+ +D I P+DGA LS CD
Sbjct: 71 LKPGFSVIDCGAAPGAWSQVAVQRVNSTGSYEEFPRGTVVGIDLQRIAPLDGAHFLSNCD 130
Query: 119 FTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA 178
T P +L+ +L + ++LSDMAPNA+G +EMDH+ + ++++++ A +PG
Sbjct: 131 ITDPVTHAKLLKLLPGGQAHIILSDMAPNASGFKEMDHEKLITMSLSLMDLADKVLRPGG 190
Query: 179 DCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ K WDG L+ ++ + +V+ +KP +SR S+ELFLL R ++
Sbjct: 191 SLICKYWDGALASVLQARLSAVFREVRTIKPKASRKESSELFLLARSYR 239
>gi|432100102|gb|ELK28995.1| Putative ribosomal RNA methyltransferase 2 [Myotis davidii]
Length = 270
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 137/214 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE+D++ + LRPGL+VLDCGAAPG
Sbjct: 49 KARTGAQHLWLTRHLKDPFVKAAKVESYRCRSAFKLLEVDTRHRILRPGLRVLDCGAAPG 108
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I P+ GA + D T P R+ +L
Sbjct: 109 AWSQVAVQRVNAAGTDPSSPVGFVLGVDLLHIAPLGGATFVCPADVTDPRTLQRVQELLP 168
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVVLSDMAPNATG+R +DHD + L +++ A PG L K W G +L
Sbjct: 169 GGRADVVLSDMAPNATGIRGLDHDRLIGLCWSLLDMAPDLLCPGGTFLCKTWAGSQSHRL 228
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ +T + V+ LKP +SR S+E++LL ++
Sbjct: 229 QKRLTEEFQSVRTLKPEASRKESSEVYLLATQYR 262
>gi|443683858|gb|ELT87960.1| hypothetical protein CAPTEDRAFT_174292 [Capitella teleta]
Length = 223
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 143/214 (66%), Gaps = 1/214 (0%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
GK + W+KRQ DPYV+KA++E++RCRSAFKL+EID K L+PG V+DCGAAPGS
Sbjct: 6 GKKMADQQWIKRQINDPYVKKAREESWRCRSAFKLMEIDDKHSILKPGHIVIDCGAAPGS 65
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQVAV VNS G D P G V+ +D + P++GA +L + DFT + Q L+T+L
Sbjct: 66 WSQVAVHRVNSLGKDPG-PTGSVIGIDLQHMMPVEGATMLHQSDFTSHETQKSLLTMLDG 124
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
K D+V+SDMAPN G++ +DH I +L + ++FA + L K+W+G R LE
Sbjct: 125 SKADLVMSDMAPNPVGVKTVDHTAIVKLCKSALKFAANVLQLNGTFLCKLWEGNERNDLE 184
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + QV+++KP +SRS SAE+FLL + FKG
Sbjct: 185 KLMRIVFKQVRVVKPLASRSDSAEIFLLAKHFKG 218
>gi|225717054|gb|ACO14373.1| ribosomal RNA methyltransferase 2 [Esox lucius]
Length = 242
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 145/229 (63%), Gaps = 3/229 (1%)
Query: 2 ISTTGPKLKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKF 58
+ T+ LK+ KGK + W+ RQ DP+V+ A NYRCRSAFKLLEID K K
Sbjct: 11 VHTSASLLKKAAHNLKGKSTADQRWIVRQLNDPFVKAAHVHNYRCRSAFKLLEIDDKYKL 70
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD 118
L+PG V+DCGAAPG+WSQVAV+ VNS G + P+G V+ +D I P+DGA LS CD
Sbjct: 71 LKPGFSVIDCGAAPGAWSQVAVQRVNSTGSYEEFPRGTVVGIDLQRIAPLDGAHFLSNCD 130
Query: 119 FTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA 178
T P +L+ +L + ++LSDMAPNA+G +EMDH+ + ++++++ A +PG
Sbjct: 131 ITDPVTHAKLLKLLPGGQAHIILSDMAPNASGFKEMDHEKLITMSLSLMDLADKVLRPGG 190
Query: 179 DCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ K WDG L+ ++ + +V+ +KP +SR S+ELFLL R ++
Sbjct: 191 SLICKYWDGALASVLQARLSAVFREVRTIKPKASRKESSELFLLARSYR 239
>gi|410984275|ref|XP_003998455.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Felis catus]
Length = 246
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/214 (46%), Positives = 137/214 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KGRTAAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA LS D T P R+ +L
Sbjct: 85 AWSQVAVQSVNAAGADPGAPVGFVLGVDLLHIFPLEGATFLSPADVTDPRTVQRVRELLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R +DHD + L +++ A PG L K W G L
Sbjct: 145 GGRADVILSDMAPNATGIRSLDHDRLISLCSSLLDVAPDILHPGGTFLCKTWAGSQSLGL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ + + + +KP +SR S+E++LL ++
Sbjct: 205 QKRLAEQFQNTRTVKPRASRKESSEVYLLATQYR 238
>gi|292611954|ref|XP_683228.2| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Danio
rerio]
Length = 259
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 144/231 (62%), Gaps = 3/231 (1%)
Query: 2 ISTTGPKLKEVP---KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKF 58
I + LK+ P KGK + WL RQ +DP+V+ A ++NYRCRSAFKL+E+D K +
Sbjct: 29 IHMSAVCLKKTPLHLKGKSTADKRWLIRQLSDPFVKAAHEQNYRCRSAFKLIEMDDKYRL 88
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD 118
L+PG V+DCGAAPG+WSQVAV+ VNS G PKG V+ +D L I+P+DGA L+ D
Sbjct: 89 LKPGFTVIDCGAAPGAWSQVAVQRVNSTGESVDLPKGSVIGIDILHIFPLDGAQFLTNHD 148
Query: 119 FTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA 178
T P L +L + DV+LSDMAPNA+G RE+DH+ + + ++++ A +PG
Sbjct: 149 ITSPSTHTALERLLPEAGADVILSDMAPNASGFRELDHERLVSMCLSMLDLADKVLRPGG 208
Query: 179 DCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ K WDG L++ + + V+ +KP +SR SAELF L R K +
Sbjct: 209 SLICKYWDGGLAHMLQQRLFSAFQDVRTVKPRASRKESAELFFLARMLKKR 259
>gi|224070396|ref|XP_002195665.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Taeniopygia
guttata]
Length = 234
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/214 (46%), Positives = 139/214 (64%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K + WL+R DP+V+ +K+++YRCRSAFKLLEID K++ LRPG VLDCGAAPG+W
Sbjct: 21 KTGAEQRWLERHLKDPFVKASKQQHYRCRSAFKLLEIDDKLRVLRPGFSVLDCGAAPGAW 80
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVAV+ VN+ G D+ P G VL VD L I P++GAV LS+ D +P + ++L
Sbjct: 81 SQVAVQRVNALGTDAAVPTGFVLGVDLLRISPLEGAVFLSETDMAEPSTLRAIQSLLPLG 140
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K DV+LSDMAPNATG++E+DH + L + ++ + + KP L K WDG L+
Sbjct: 141 KADVILSDMAPNATGIKELDHQKLISLCLGLLDMSQSILKPKGTMLCKFWDGSEARLLQN 200
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V+ +KP +SR SAE + L R ++GK
Sbjct: 201 RLKEQFQDVRTIKPQASRKDSAESYYLARLYRGK 234
>gi|300795838|ref|NP_001178187.1| putative ribosomal RNA methyltransferase 2 [Bos taurus]
gi|296473105|tpg|DAA15220.1| TPA: FtsJ homolog 2-like [Bos taurus]
Length = 244
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 139/216 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KSRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEMNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P ++ +L
Sbjct: 85 AWSQVAVQRVNAAGTDPSAPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTFRKIQELLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R +DHD + L ++++ P L K W G +L
Sbjct: 145 GGRADVILSDMAPNATGIRSLDHDRLISLCLSLLDMVPDVLHPRGTFLCKTWAGSQSQRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
++ +T+ + + +KP +SR S+E++LL ++GK
Sbjct: 205 QKRLTQEFQNTRTVKPEASRKESSEVYLLATQYRGK 240
>gi|301791140|ref|XP_002930562.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Ailuropoda melanoleuca]
Length = 246
Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 99/214 (46%), Positives = 136/214 (63%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWL R DP+V+ AK E+YRCRSAFKLLE+D + LRPGL+VLDCGAAPG
Sbjct: 25 KGRTGAEHLWLTRHLKDPFVKAAKMESYRCRSAFKLLEVDERHGILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D + P G VL VD L I P++GA L D T P R+ +L
Sbjct: 85 AWSQVAVQRVNAAGTDPRAPVGFVLGVDLLHISPLEGATFLCPADVTDPRTLQRIQELLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R +DHD + L +++ A PG L K+W G
Sbjct: 145 GGRADVILSDMAPNATGIRSLDHDRLIGLCSSLLDTAPHVLHPGGTFLCKMWAGSQSLAY 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ +T + + +KP +SR S+E++LL ++
Sbjct: 205 QKRLTGQFQNTRTVKPRASRKESSEVYLLATQYQ 238
>gi|301631567|ref|XP_002944869.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Xenopus
(Silurana) tropicalis]
Length = 246
Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 138/211 (65%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + WL RQ DPYV++A+ NYRCRSAFKLLEID+K L+PG V+DCGAAPG
Sbjct: 29 KSRTAAEQRWLARQMKDPYVREAQTHNYRCRSAFKLLEIDNKHHILQPGHHVIDCGAAPG 88
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VNS G DS G V+ VD L I P+DGAV LS D T D Q +++++L
Sbjct: 89 AWSQVAVEKVNSLGRDSAASAGFVVGVDLLNIAPLDGAVFLSNSDITDFDTQKKIISVLP 148
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DV+LSDMAPNATG+R++DH + + ++++ + G L K+WDG +
Sbjct: 149 SGKADVILSDMAPNATGIRDLDHQRLVNMCLSLLELSERVLLSGGTFLCKVWDGSEINLV 208
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGR 224
+ + + + V+ +KP +SR SAE++LL +
Sbjct: 209 RDRLRQRFQDVRTVKPKASRMESAEVYLLAK 239
>gi|281349747|gb|EFB25331.1| hypothetical protein PANDA_021048 [Ailuropoda melanoleuca]
Length = 235
Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 134/209 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + HLWL R DP+V+ AK E+YRCRSAFKLLE+D + LRPGL+VLDCGAAPG
Sbjct: 23 KGRTGAEHLWLTRHLKDPFVKAAKMESYRCRSAFKLLEVDERHGILRPGLRVLDCGAAPG 82
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D + P G VL VD L I P++GA L D T P R+ +L
Sbjct: 83 AWSQVAVQRVNAAGTDPRAPVGFVLGVDLLHISPLEGATFLCPADVTDPRTLQRIQELLP 142
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R +DHD + L +++ A PG L K+W G
Sbjct: 143 GGRADVILSDMAPNATGIRSLDHDRLIGLCSSLLDTAPHVLHPGGTFLCKMWAGSQSLAY 202
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLL 222
++ +T + + +KP +SR S+E++LL
Sbjct: 203 QKRLTGQFQNTRTVKPRASRKESSEVYLL 231
>gi|440913015|gb|ELR62523.1| Putative ribosomal RNA methyltransferase 2, partial [Bos grunniens
mutus]
Length = 244
Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 139/216 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ +K E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KSRTGTEHLWLTRHLRDPFVKASKVESYRCRSAFKLLEMNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P ++ +L
Sbjct: 85 AWSQVAVQRVNAAGTDPSAPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTFRKIQELLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R +DHD + L ++++ P L K W G +L
Sbjct: 145 GGRADVILSDMAPNATGIRSLDHDRLISLCLSLLDMVPDVLHPRGTFLCKTWAGSQSQRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
++ +T+ + + +KP +SR S+E++LL ++GK
Sbjct: 205 QKRLTQEFQNTRTVKPEASRKESSEVYLLATQYRGK 240
>gi|291415281|ref|XP_002723882.1| PREDICTED: FtsJ homolog 2 [Oryctolagus cuniculus]
Length = 740
Score = 206 bits (523), Expect = 9e-51, Method: Composition-based stats.
Identities = 103/214 (48%), Positives = 137/214 (64%), Gaps = 3/214 (1%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
+ H WL+R DP+V+ A+ E+YRCRSAFKLLE+D K + LRPGL+VLDCGAAPGSWSQV
Sbjct: 30 AEHRWLQRHLRDPFVKAARAESYRCRSAFKLLEMDRKHRILRPGLRVLDCGAAPGSWSQV 89
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ VN+ G D P G VL VD L ++P++GA L D P R+ +L D
Sbjct: 90 AVQRVNAAGTDPSSPVGFVLGVDVLHVFPLEGATFLCPADVMDPGAWPRIRELLPGGVAD 149
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMAPNATG+R +DHD + L +A++ A +PG L K W G +L+ +
Sbjct: 150 VVLSDMAPNATGIRALDHDRLISLCLALVDLAPDLLQPGGTLLCKTWAGSQSHRLQSRLR 209
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG---RGFKGK 229
+ V+ +KP +SR SAE++LL RG KG+
Sbjct: 210 EEFLSVRAVKPEASRKESAEVYLLATQHRGRKGR 243
>gi|417408977|gb|JAA51016.1| Putative cell division protein ftsj, partial [Desmodus rotundus]
Length = 243
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 134/210 (63%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
+ HLWL RQ DP+V+ AK E+YRCRSAFKLLE+D+K + LRPGL+VLDCGAAPG+WSQV
Sbjct: 27 AEHLWLMRQLKDPFVKAAKVESYRCRSAFKLLEMDAKHRILRPGLRVLDCGAAPGAWSQV 86
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ VN+ G D P G VL VD L I P+ GA L + T P ++ +L D
Sbjct: 87 AVQRVNAAGTDPSSPVGFVLGVDLLHISPLGGATFLCPANVTDPKTFQKIQELLPGGTAD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
V+LSDMAPNATG+R +DHD + L ++++ PG L K W G +L++ +
Sbjct: 147 VILSDMAPNATGIRGLDHDRLIGLCLSLLDMVPEILHPGGSFLCKTWAGSQSHRLQKRLM 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + LKP +SR SAE+++L ++G
Sbjct: 207 GEFQNTRTLKPEASRKDSAEVYILATQYRG 236
>gi|432868018|ref|XP_004071370.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Oryzias
latipes]
Length = 250
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 136/214 (63%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
GK + W++RQ DPYV+ + +N+RCRSAFKLLEID + + L+PG V+DCGAAPG+
Sbjct: 34 GKTPAEQRWVQRQLKDPYVKASHSQNFRCRSAFKLLEIDDRFRLLQPGFSVVDCGAAPGA 93
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQVAV+ VNS G D P+G+V+ +D L I P+ GA L D T P L +L
Sbjct: 94 WSQVAVQRVNSAGSDQDLPRGMVIGIDLLHIPPLAGAHFLPSHDVTDPATHAELQALLPS 153
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+ V+LSDMAPNATG R+MDH+ + + +++I A PG L K WDG +L+
Sbjct: 154 GQAHVILSDMAPNATGFRDMDHERLVSMCLSLIDLAEKVLLPGGSLLCKYWDGVLAHRLQ 213
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E ++ +S V+ +KP +SR SAE + L R ++G
Sbjct: 214 EKLSSVFSSVRTVKPDASRKDSAERYFLARMYRG 247
>gi|449281429|gb|EMC88509.1| Putative ribosomal RNA methyltransferase 2, partial [Columba livia]
Length = 234
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/214 (49%), Positives = 140/214 (65%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K + H WL+R DP+V+ AK+++YRCRSAFKLLEID K + LRPGL VLDCGAAPG+W
Sbjct: 21 KTGAEHWWLQRHLKDPFVKAAKRQHYRCRSAFKLLEIDDKHRILRPGLCVLDCGAAPGAW 80
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVAV+ VN+ G D P G VL VD L I P++GAV LS+ D P + +L +
Sbjct: 81 SQVAVERVNALGTDPAVPTGFVLGVDLLRISPLEGAVFLSERDIADPSTVRAIQGLLPAE 140
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+DVVLSDMAPNATG++E+DH + L + ++ + + KP L K WDGR L+
Sbjct: 141 KVDVVLSDMAPNATGIKELDHQKLISLCLGLLSLSQSILKPKGTMLCKFWDGRESHLLQN 200
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V+ +KP +SR SAE + L R +KGK
Sbjct: 201 RLKEQFQDVRTIKPQASRKDSAESYYLARLYKGK 234
>gi|242014003|ref|XP_002427688.1| cell division protein ftsj, putative [Pediculus humanus corporis]
gi|212512118|gb|EEB14950.1| cell division protein ftsj, putative [Pediculus humanus corporis]
Length = 228
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 139/212 (65%), Gaps = 1/212 (0%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K +S WLKR D YV+KAKKENYRCRSAFKLLEI+ K ++PG VLD GA+PGSW
Sbjct: 14 KSFNSTEWLKRHNNDIYVEKAKKENYRCRSAFKLLEINDKYNLVKPGDVVLDVGASPGSW 73
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV NS+G K PKG V+++D PI+PI+G +LS DFT Q+++ I +
Sbjct: 74 SQVLASKTNSNGKIDKSPKGTVIAIDISPIFPIEGVTILSNLDFTNESSQEKIKGITNGE 133
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K D + SDMAP +TG++ +D + I +L +V+ F+V K G L+KIWDG++ +L
Sbjct: 134 KFDFIFSDMAPKSTGVKSLDQENIIKLLYSVLFFSVNNLKGGGGILLKIWDGQHE-RLVN 192
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
I +F++ + +KP +S S+E +LLGR FK
Sbjct: 193 DIKKFFNLLHFIKPKASYKSSSESYLLGREFK 224
>gi|259089269|ref|NP_001158672.1| ribosomal RNA methyltransferase 2 [Oncorhynchus mykiss]
gi|225705722|gb|ACO08707.1| ribosomal RNA methyltransferase 2 [Oncorhynchus mykiss]
Length = 244
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 137/214 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK + W+ RQ DP+V+ A NYRCRSAFKLLEID K K L+PG V+DCGAAPG
Sbjct: 26 KGKSTADQRWIVRQLNDPFVKAAHVHNYRCRSAFKLLEIDDKYKLLKPGFNVIDCGAAPG 85
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQ+AV VNS G + + P+G V+ +D L I P+DGA LS D T P +L+ +L
Sbjct: 86 AWSQIAVHRVNSTGANGEFPRGTVVGIDLLRIAPLDGAHFLSNHDITDPVTHAKLLELLP 145
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ V++SDMAPNA+G +EMDH+ + +++++I A + G + K WDG Q
Sbjct: 146 GAQAHVIMSDMAPNASGFKEMDHEKLITMSLSLIDLAAKVLQTGGSLICKYWDGALAHQP 205
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ ++ + V+ +KP +SR S+ELF L R ++
Sbjct: 206 QQKLSAVFRDVRTVKPKASRKESSELFFLARSYR 239
>gi|405963785|gb|EKC29332.1| hypothetical protein CGI_10009815 [Crassostrea gigas]
Length = 244
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 141/213 (66%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SSH W++RQ DPYV++A++EN+RCRSAFKLLEID K K PG V+D GAAPGSW
Sbjct: 22 KGTSSHKWIQRQHKDPYVKRAREENWRCRSAFKLLEIDDKHKLFSPGQLVIDIGAAPGSW 81
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+QVA + N+ G D+K PKG V+S+D LPI + GA ++ DFT + Q +++ +
Sbjct: 82 TQVACRRTNAAGSDAKLPKGKVISIDLLPIVRVPGAQIIDCTDFTSLECQGKIIELSAGK 141
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K DV+LSDMAPNA+G++ D ++ L V++F+V L+K+W G +LE+
Sbjct: 142 KADVILSDMAPNASGIKTFDGRILVSLVSKVLKFSVNQLGANGTVLVKLWHGAGCDELEQ 201
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + ++ VK++KP +SR S E++ L + FKG
Sbjct: 202 VMDKLFNSVKLVKPQASRDDSREIYYLCQKFKG 234
>gi|260824435|ref|XP_002607173.1| hypothetical protein BRAFLDRAFT_68032 [Branchiostoma floridae]
gi|229292519|gb|EEN63183.1| hypothetical protein BRAFLDRAFT_68032 [Branchiostoma floridae]
Length = 207
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 139/205 (67%), Gaps = 5/205 (2%)
Query: 24 LKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLV 83
+ RQ +DPYVQKA +N+RCRSA+KL+E+D K +FL+PGL V+DCGA PGSW+QVAV V
Sbjct: 1 MVRQLSDPYVQKAAVDNFRCRSAYKLIEMDDKFRFLKPGLAVVDCGACPGSWTQVAVNRV 60
Query: 84 NS-HGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
N+ G+ P+G+V+ VD + PI GA +LS CDFT + Q+ + L + K DVVLS
Sbjct: 61 NAAEGF----PRGMVVGVDLQHMSPIPGAKLLSNCDFTLEETQEHIRKHLPNGKADVVLS 116
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPNATG+ +DHD I L ++ +F+ + + K+WDG + + + + +
Sbjct: 117 DMAPNATGLASLDHDQIVSLQLSAFKFSKVVLREDGVFVCKLWDGSHCKKFQSVVGDVFK 176
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK++KP SSRS+SAELF+ RG+K
Sbjct: 177 FVKVVKPQSSRSNSAELFVFARGYK 201
>gi|410902857|ref|XP_003964910.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Takifugu rubripes]
Length = 238
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 136/214 (63%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK + W+ RQ DPYV+ + +++RCRSAFKLLEID K L+PG V+DCGAAPG
Sbjct: 21 KGKTPAEQRWMLRQRKDPYVKASHAQHFRCRSAFKLLEIDDKFHLLQPGYGVVDCGAAPG 80
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VNS G D + P G V+ +D L I P+DGA LS D T P +L+ +L
Sbjct: 81 AWSQVAVQRVNSDGADPESPFGAVVGIDLLNIPPLDGAHFLSSHDVTDPSTHTKLLELLP 140
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ V+LSDMAPNA+G +EMDH+ + ++ +++ A KPG + K WDG +L
Sbjct: 141 GGQAHVILSDMAPNASGFKEMDHERLIRMCFSLLDLAEKILKPGGSLICKYWDGALAQKL 200
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+E ++ + V+ LKP +SR SAE + + +K
Sbjct: 201 QEKLSGVFGSVRTLKPNASRKDSAEKYFFAQMYK 234
>gi|291232361|ref|XP_002736125.1| PREDICTED: AGAP004177-PA-like [Saccoglossus kowalevskii]
Length = 239
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 134/213 (62%), Gaps = 6/213 (2%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL RQ DPYV++A+ NYR RSAFKL+EID K LRPG V+DCGAAPG
Sbjct: 29 KGRSKSSQEWLSRQLNDPYVKRAQMGNYRARSAFKLIEIDDKYAILRPGSVVIDCGAAPG 88
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+W+QV V+ +N+ G KG V+SVD PI+GAV++ + DFT Q + ++
Sbjct: 89 AWTQVTVERINAEG------KGQVISVDLKYFQPINGAVIIDQSDFTLESTQKLIFEQMQ 142
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
++ DV++SDMAPNA+GM MDH+ I L A FA + L K+W+G +
Sbjct: 143 KNQADVIISDMAPNASGMHAMDHENIMVLCQAAFGFAKQVLRNNGIFLCKLWEGGQSGKF 202
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
++ + + + VKI+KP SSR SAE+F L RGF
Sbjct: 203 KKDLAKTFKTVKIVKPDSSRKDSAEMFFLARGF 235
>gi|47208174|emb|CAF94129.1| unnamed protein product [Tetraodon nigroviridis]
Length = 229
Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 133/213 (62%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK H+ W+ RQ DPYV+ + +N RCRSAFKLLE+D + LRPG V+DCGAAPG
Sbjct: 17 KGKTHAEQRWMLRQRKDPYVKASHSQNLRCRSAFKLLEMDDRFHLLRPGYSVVDCGAAPG 76
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VNS G + + P G V+ +D L I P+DGA LS D T P +++ +L
Sbjct: 77 AWSQVAVRRVNSAGAEPESPIGTVIGIDLLNIPPLDGAHFLSSHDVTDPTTHAKILELLP 136
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ V+LSDMAPNA+G ++MDH+ + + ++ A +PG + K W+G +L
Sbjct: 137 SGQAHVILSDMAPNASGFKDMDHERLVTMCFCLLDLAEKTLRPGGSLVCKYWEGALAQKL 196
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
++ ++ + V+ LKP +SR SAE + R +
Sbjct: 197 QDKLSSVFGSVRTLKPSASRKDSAEKYFFARMY 229
>gi|225711000|gb|ACO11346.1| ribosomal RNA methyltransferase CG11447 [Caligus rogercresseyi]
Length = 251
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 134/210 (63%), Gaps = 10/210 (4%)
Query: 20 SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA 79
S W++RQ D YV+KA+ E YR RSA+KLLE+D K+K LRP + V++CG APG+W+QV
Sbjct: 49 SSSWIRRQAKDIYVKKARSEGYRARSAYKLLEMDDKLKILRPNMNVMECGGAPGAWTQVL 108
Query: 80 VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL-KDDKLD 138
+ V+S G+++S D L P+ A++L DFT P QD +++ L K D
Sbjct: 109 TERVSS---------GMIISCDLLDYEPVGHAIILPNSDFTSPSTQDTILSHLGKSSGFD 159
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPNA+GM E++H I L+ +FA+ +SKPGA L K+W+G +
Sbjct: 160 LVLSDMAPNASGMAELNHGQILNLSYEATKFALRHSKPGAAFLTKLWNGNGLEGYLTDLR 219
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
RFY+ V+++KP SSR SAELF+ FKG
Sbjct: 220 RFYNNVQVVKPKSSRKESAELFIYASKFKG 249
>gi|225717720|gb|ACO14706.1| ribosomal RNA methyltransferase CG11447 [Caligus clemensi]
Length = 249
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/206 (46%), Positives = 130/206 (63%), Gaps = 9/206 (4%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
W++RQ D YV+KA+ E YR RSA+KLLEI+ K K LRP + V++CG APGSW+QV +
Sbjct: 51 WIRRQSKDIYVKKAQSEGYRARSAYKLLEINEKFKILRPKMTVMECGGAPGSWTQVLTQK 110
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
V+S G V+S D L P+D A++L + DFT P Q+ ++ LK D D+VLS
Sbjct: 111 VHS---------GEVISCDLLDYDPVDHAIILPQSDFTLPQTQEIILGHLKADGFDLVLS 161
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPNA+GM E+ H I L+ V +FA+ +S GA L K+WDG + RFY
Sbjct: 162 DMAPNASGMSELSHQQILNLSYEVTKFALRHSNKGAIFLTKLWDGEGTQDFISDLKRFYR 221
Query: 203 QVKILKPPSSRSHSAELFLLGRGFKG 228
V+I+KP +SR SAE+++ FKG
Sbjct: 222 NVQIVKPKASRKESAEIYIYASKFKG 247
>gi|391327414|ref|XP_003738195.1| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like
[Metaseiulus occidentalis]
Length = 251
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 134/218 (61%), Gaps = 3/218 (1%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+GK+ ++ WL RQ DPYV+K++ NYR RSAFKLLE+D K LRPG+ V+DCGAAPG
Sbjct: 32 RGKNKTAQDWLSRQLNDPYVKKSRYHNYRARSAFKLLEMDEKYNLLRPGMTVIDCGAAPG 91
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QV V VN+ P G V+S+D +P P+ A + DF D R++ L
Sbjct: 92 SWTQVLVPKVNADRRCEDHPVGKVISIDVVPFEPVPHANCYGEVDFLDDDSVKRVLEDLG 151
Query: 134 DD---KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
D+V+SDMAPNA+G+ +DH+ IT L+ A + FA+ KPG + K+W G
Sbjct: 152 AGWSLSCDLVVSDMAPNASGVAAIDHEKITVLSYAALVFALKTLKPGGGFICKLWHGSRT 211
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
P+L+ + ++ V I+KP +SR SAE+F + F+G
Sbjct: 212 PELKADLKTHFNHVHIVKPDASRGDSAEIFFVAERFRG 249
>gi|156392658|ref|XP_001636165.1| predicted protein [Nematostella vectensis]
gi|156223265|gb|EDO44102.1| predicted protein [Nematostella vectensis]
Length = 210
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 135/213 (63%), Gaps = 7/213 (3%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
++ SS WL+R ADPYV+KA ++NYRCRSA+KL+++D K FL PG V+DCGA+PGSW
Sbjct: 1 RNDSSTRWLRRHLADPYVKKASEDNYRCRSAYKLIQLDDKYHFLLPGHVVIDCGASPGSW 60
Query: 76 SQVAVKLV--NSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+QVAV+ V N G +GLV+++D L I I GAV++ +CDFT Q +++++L
Sbjct: 61 TQVAVERVIPNIGG-----EQGLVVAIDLLDIKAIPGAVIMGRCDFTHKATQTKILSLLP 115
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
++V+LSDMAPN++G +DH+ I L + F +PG L K+WDGR
Sbjct: 116 SFGVNVILSDMAPNSSGNHSLDHEAILDLCDSAFEFGQKTLRPGGVFLCKLWDGRGTVDF 175
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+ + R + VK KP +SR S E+++ GF
Sbjct: 176 MQMLKRSFKLVKKCKPQASRKDSPEIYIYAAGF 208
>gi|349686269|ref|ZP_08897411.1| ribosomal RNA large subunit 23S methyltransferase RrmJ
[Gluconacetobacter oboediens 174Bp2]
Length = 254
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 134/215 (62%), Gaps = 12/215 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + H WL+RQ DPYVQ A+K+ +R R+AFKL+E+D + + +RPG +V+D GAAPG
Sbjct: 46 RGRTTAQHRWLQRQLNDPYVQAAQKQGWRSRAAFKLIELDDRFQLIRPGARVVDLGAAPG 105
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAVK + V+ VD LP+ P+ GA ++ + DF PD+ DRL +L
Sbjct: 106 GWTQVAVKRGAAE----------VVGVDLLPVDPVPGATII-EGDFNDPDMPDRLTGLL- 153
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVV+SDMAPN TG DH I LA + FAV PG + K++ G + Q+
Sbjct: 154 GGRADVVMSDMAPNTTGHAPTDHLRIIGLAELALDFAVRILAPGGTFVAKVFQGGSEKQM 213
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R ++QV+ KPP+SR S+EL+++ GF+G
Sbjct: 214 LADLKRMFTQVRHAKPPASRKESSELYVVATGFRG 248
>gi|119390695|pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
In Complex With S-Adenosylmethionine
gi|119390696|pdb|2NYU|B Chain B, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
In Complex With S-Adenosylmethionine
Length = 196
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 86/190 (45%), Positives = 122/190 (64%)
Query: 40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLS 99
+YR RSAFKLLE++ + + LRPGL+VLDCGAAPG+WSQVAV+ VN+ G D P G VL
Sbjct: 1 SYRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLG 60
Query: 100 VDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLI 159
VD L I+P++GA L D T P R++ +L + DV+LSDMAPNATG R++DHD +
Sbjct: 61 VDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRL 120
Query: 160 TQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAEL 219
L + ++ +PG L K W G +L+ +T + V+I+KP +SR S+E+
Sbjct: 121 ISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEV 180
Query: 220 FLLGRGFKGK 229
+ L + G+
Sbjct: 181 YFLATQYHGR 190
>gi|296116233|ref|ZP_06834851.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gluconacetobacter
hansenii ATCC 23769]
gi|295977339|gb|EFG84099.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gluconacetobacter
hansenii ATCC 23769]
Length = 213
Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 133/216 (61%), Gaps = 12/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + H WL+RQ DPYVQ A+K+ +R R+AFKL+E+D + +RPG++V+D GAAPG
Sbjct: 7 RGRTTAQHRWLQRQLNDPYVQAAQKQGWRSRAAFKLIELDDRFHLIRPGMRVVDLGAAPG 66
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAVK SH V+ VD LP+ P+ GA ++ + DF PD+ +RL +L
Sbjct: 67 GWAQVAVKRGASH----------VIGVDLLPVDPVPGATII-EGDFNDPDMPERLRELL- 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D D+V+SDMAPN TG DH I LA + FA PG + K++ G Q+
Sbjct: 115 DGAPDLVMSDMAPNTTGHAPTDHLRIIGLAELALDFATQILAPGGSFIAKVFQGGAEKQM 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+++ + QV+ KPP+SR S+EL+++ F+G+
Sbjct: 175 LQALKHSFGQVRHAKPPASRKESSELYVIATDFRGR 210
>gi|330994695|ref|ZP_08318618.1| Ribosomal RNA large subunit methyltransferase E [Gluconacetobacter
sp. SXCC-1]
gi|329758336|gb|EGG74857.1| Ribosomal RNA large subunit methyltransferase E [Gluconacetobacter
sp. SXCC-1]
Length = 254
Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 131/215 (60%), Gaps = 12/215 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + H WL+RQ DPYVQ A+K+ +R R+AFKL+E+D + +RPG +V+D GAAPG
Sbjct: 46 RGRTTAQHRWLQRQLNDPYVQAAQKQGWRSRAAFKLIELDDRFHLIRPGTRVVDLGAAPG 105
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAVK + V+ VD LP+ P+ GA V+ + DF PD+ DRL +L
Sbjct: 106 GWTQVAVKRGAAE----------VVGVDLLPVDPVPGATVI-EGDFNDPDMPDRLTGLL- 153
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ D+V+SDMAPN TG DH I LA + FA P + K++ G + Q+
Sbjct: 154 GGRADLVMSDMAPNTTGHAPTDHLRIIGLAELALHFATRILAPDGAFVAKVFQGGSEKQM 213
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R ++QV+ KPP+SR S+EL+++ GF+G
Sbjct: 214 LADLKRLFTQVRHAKPPASRKESSELYVVATGFRG 248
>gi|349700055|ref|ZP_08901684.1| ribosomal RNA large subunit 23S methyltransferase RrmJ
[Gluconacetobacter europaeus LMG 18494]
Length = 254
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 131/215 (60%), Gaps = 12/215 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + H WL+RQ DPYVQ A+K+ +R R+AFKL+E+D + +RPG +V+D GAAPG
Sbjct: 46 RGRTTAQHRWLQRQLNDPYVQAAQKQGWRSRAAFKLIELDDRFHMIRPGARVVDLGAAPG 105
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAVK + V+ VD LP+ P+ GA ++ + DF PD+ DRL +L
Sbjct: 106 GWTQVAVKRGAAE----------VVGVDLLPVDPVPGATII-EGDFNDPDMPDRLTGLL- 153
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVV+SDMAPN TG DH I LA + FA P + K++ G + Q+
Sbjct: 154 GGRADVVMSDMAPNTTGHAPTDHLRIIGLAELALDFATRILAPDGTFVAKVFQGGSEKQM 213
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R ++QV+ KPP+SR S+EL+++ GF+G
Sbjct: 214 LADLKRMFTQVRHAKPPASRKESSELYVVATGFRG 248
>gi|344339771|ref|ZP_08770699.1| Ribosomal RNA large subunit methyltransferase E [Thiocapsa marina
5811]
gi|343800507|gb|EGV18453.1| Ribosomal RNA large subunit methyltransferase E [Thiocapsa marina
5811]
Length = 206
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/212 (43%), Positives = 133/212 (62%), Gaps = 9/212 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K SS WL RQ +DPYV++A++E YR R+A+KLLEI K + RPG++VLD GAAPGS
Sbjct: 2 AKTASSRKWLDRQHSDPYVKRAQREGYRSRAAYKLLEIQEKDRIFRPGMRVLDLGAAPGS 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQ+A +LV + +G V+++D LP+ P+ G VV+ + DF +P+I DRL L
Sbjct: 62 WSQIAARLVGA--------RGSVVALDLLPMDPLAGVVVM-QGDFREPEILDRLCATLGG 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+ LD+VLSDMAPN TGM +D L + A + +PG ++K++ G +
Sbjct: 113 ESLDLVLSDMAPNITGMTVVDQPRSMYLVELALDLARSRLQPGGALVVKVFQGTGFDDIL 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+ R +++V KP SSRS S EL+L+ +GF
Sbjct: 173 TELRRSFAKVVSRKPKSSRSQSRELYLVAKGF 204
>gi|339245559|ref|XP_003378705.1| putative serine protease pcp-1 [Trichinella spiralis]
gi|316972372|gb|EFV56050.1| putative serine protease pcp-1 [Trichinella spiralis]
Length = 826
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 127/217 (58%), Gaps = 8/217 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W+ R DPYV + + ENYRCRSAFKLLEID + + L+PG+ VLD G++PGSWSQV
Sbjct: 611 SSKQWIARHLRDPYVVRCRSENYRCRSAFKLLEIDDRFQILKPGMLVLDLGSSPGSWSQV 670
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPD-----IQDRLVTILK 133
+ VNS SK P G V +VD+ P+ P+DG L D + D +Q R I
Sbjct: 671 LSRRVNSVKLGSK-PFGKVFAVDRQPMEPLDGVTWLGPLDLSVGDSVDVLLQRRRRLIDG 729
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG--ADCLIKIWDGRNRP 191
+ LD V+SDMAPNATG +DH+ I QL + A+ K + L K+W G +
Sbjct: 730 GEPLDAVVSDMAPNATGCASVDHERIVQLGFLSLSIAIRCLKLSDRSFFLCKLWQGVEQW 789
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ I R + KI+KP +SR SAEL+ L R FKG
Sbjct: 790 HFADEIKRHFGNFKIVKPTASRKESAELYFLARQFKG 826
>gi|389691027|ref|ZP_10179920.1| 23S rRNA methylase [Microvirga sp. WSM3557]
gi|388589270|gb|EIM29559.1| 23S rRNA methylase [Microvirga sp. WSM3557]
Length = 232
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 128/211 (60%), Gaps = 10/211 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV +AK+E YR R+AFKL+EID K K L+PG +++D GAAPG WSQ+
Sbjct: 25 SSQKWLERQLNDPYVARAKREGYRSRAAFKLIEIDDKYKILKPGQRIVDLGAAPGGWSQI 84
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V PKG ++ +D LPI P+ G V + DF RL+ +L D
Sbjct: 85 AAKKVG--------PKGKIVGIDLLPIDPMAG-VEFIELDFLDESAPARLIEML-GGPAD 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG ++ DH I LA A I FA PG + K++ G QL +
Sbjct: 135 VVMSDMAANTTGHKKTDHLRIIGLAEAAIYFAREILAPGGAFVAKVFQGGTENQLLADLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R ++ V+ +KP +SR+ SAEL++L GF+G+
Sbjct: 195 RDFAVVRHVKPAASRADSAELYVLATGFRGR 225
>gi|154244787|ref|YP_001415745.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xanthobacter
autotrophicus Py2]
gi|226705323|sp|A7IDJ5.1|RLME_XANP2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|154158872|gb|ABS66088.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xanthobacter
autotrophicus Py2]
Length = 254
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 134/216 (62%), Gaps = 7/216 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV +AK+E +R R+AFKL+E+D K + L+ G++++D GAAPG
Sbjct: 21 RGRTTSSQKWLQRQLNDPYVARAKREGWRSRAAFKLIEMDEKARLLKRGMRIVDLGAAPG 80
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA K + ++ G ++++D L I PI G V ++ DF PD +RL+ +L
Sbjct: 81 GWSQVAAKKIG-----LEEGLGKIVAIDLLEIEPIPG-VAFAQMDFLAPDAPERLIAML- 133
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ D+V+SDMA NATG ++ DH I L + FA PG L K+ G L
Sbjct: 134 GGQADLVMSDMAANATGHKKTDHLRIVGLVELAVEFARQVLAPGGTFLAKVIQGGMEATL 193
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++QV+ +KP +SR+ SAEL++L GF+G+
Sbjct: 194 LADLKRDFTQVRHVKPAASRADSAELYVLATGFRGE 229
>gi|162147649|ref|YP_001602110.1| ribosomal RNA large subunit methyltransferase J [Gluconacetobacter
diazotrophicus PAl 5]
gi|209542278|ref|YP_002274507.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786226|emb|CAP55808.1| putative ribosomal RNA large subunit methyltransferase J
[Gluconacetobacter diazotrophicus PAl 5]
gi|209529955|gb|ACI49892.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gluconacetobacter
diazotrophicus PAl 5]
Length = 264
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 130/214 (60%), Gaps = 12/214 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + WL RQ DPYVQ A+K+ +R R+AFKL+E+D + +RPG++V+D GAAPG
Sbjct: 51 RGRTTAQQRWLNRQLNDPYVQAARKQGWRSRAAFKLIELDDRFHLIRPGMRVIDLGAAPG 110
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAVK ++ V+ VD LP+ P+ GA ++ + DF PD+ RL+ +L
Sbjct: 111 GWTQVAVKRGAAY----------VVGVDLLPVDPVAGATII-EGDFNDPDMPARLIDLL- 158
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+VLSDMAPN TG DH I LA + FAV PG + K++ G + Q+
Sbjct: 159 GGPADLVLSDMAPNTTGHAPTDHLRIIGLAELALDFAVKVLAPGGGFVAKVFQGGSEKQM 218
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + ++ V+ KPP+SR S+EL+++ GF+
Sbjct: 219 LAPMKQAFATVRHAKPPASRKESSELYVVATGFR 252
>gi|170739001|ref|YP_001767656.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium sp.
4-46]
gi|168193275|gb|ACA15222.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium sp.
4-46]
Length = 258
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 128/215 (59%), Gaps = 3/215 (1%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV +AK+E YR R+A+KLLEID + LRPG +V+D GAAPG
Sbjct: 21 RGRTVSSKRWLERQLNDPYVARAKREGYRSRAAYKLLEIDERFHLLRPGQRVVDLGAAPG 80
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA V SH + P+G V+ +D L I P+ G L+ DF P RL+ +L
Sbjct: 81 GWSQVAAAKVGSH-PGAPPPRGRVVGIDLLEIEPMPGVDFLT-LDFLDPSAPARLIALL- 137
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMA NATG ++ DH I LA FA PG L K+ G L
Sbjct: 138 GGPADLVMSDMAANATGHKKTDHLRIMGLAETAAAFAREVLAPGGAYLAKVLQGGTEGGL 197
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R ++ V+ +KP +SR+ S+EL++L G++G
Sbjct: 198 LADLKRDFAAVRHVKPAASRADSSELYVLATGYRG 232
>gi|414343696|ref|YP_006985217.1| ribosomal RNA large subunit methyltransferase J [Gluconobacter
oxydans H24]
gi|411029031|gb|AFW02286.1| ribosomal RNA large subunit methyltransferase J [Gluconobacter
oxydans H24]
Length = 266
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 128/214 (59%), Gaps = 12/214 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + WL RQ DPYV A+K+ +R R+AFKL+EID + ++PG +V+D GAAPG
Sbjct: 57 RGRTTAQQRWLNRQLNDPYVAAARKQGWRSRAAFKLIEIDDRFHIIKPGARVIDLGAAPG 116
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVK H + VD LP+ P+ GA ++ + DFT P++ DRL IL
Sbjct: 117 GWSQVAVKRGAGH----------IAGVDLLPVDPVSGAEII-EGDFTDPEMPDRLKEIL- 164
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMAPN TG DH I LA + FA+ G + K++ G + Q+
Sbjct: 165 GGPADLVMSDMAPNTTGHAATDHMRIMGLAEGALDFAMQVLAEGGSFVAKVFQGGSEKQM 224
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+S+ ++ VK +KPP+SR S+EL+++ GF+
Sbjct: 225 LDSMKLAFASVKHVKPPASRKESSELYVIASGFR 258
>gi|453331116|dbj|GAC86695.1| ribosomal RNA large subunit methyltransferase J [Gluconobacter
thailandicus NBRC 3255]
Length = 266
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 128/214 (59%), Gaps = 12/214 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + WL RQ DPYV A+K+ +R R+AFKL+EID + ++PG +V+D GAAPG
Sbjct: 57 RGRTTAQQRWLNRQLNDPYVAAARKQGWRSRAAFKLIEIDDRFHIIKPGARVIDLGAAPG 116
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVK H + VD LP+ P+ GA ++ + DFT P++ DRL IL
Sbjct: 117 GWSQVAVKRGAGH----------IAGVDLLPVDPVSGAEII-EGDFTDPEMPDRLKEIL- 164
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMAPN TG DH I LA + FA+ G + K++ G + Q+
Sbjct: 165 GGPADLVMSDMAPNTTGHAATDHMRIMGLAEGALDFAMQVLAEGGSFVAKVFQGGSEKQM 224
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+S+ ++ VK +KPP+SR S+EL+++ GF+
Sbjct: 225 LDSMKLAFASVKHVKPPASRKESSELYVIATGFR 258
>gi|410943380|ref|ZP_11375121.1| 23S rRNA methyltransferase J [Gluconobacter frateurii NBRC 101659]
Length = 266
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 128/214 (59%), Gaps = 12/214 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + WL RQ DPYV A+K+ +R R+AFKL+EID + ++PG +V+D GAAPG
Sbjct: 57 RGRTTAQQRWLNRQLNDPYVAAARKQGWRSRAAFKLIEIDDRFHIIKPGARVIDLGAAPG 116
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVK H + VD LP+ P+ GA ++ + DFT P++ DRL IL
Sbjct: 117 GWSQVAVKRGAGH----------IAGVDLLPVDPVSGAEII-EGDFTDPEMPDRLKEIL- 164
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMAPN TG DH I LA + FA+ G + K++ G + Q+
Sbjct: 165 GGPADLVMSDMAPNTTGHAATDHMRIMGLAEGALDFAMQVLAEGGSFVAKVFQGGSEKQM 224
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+S+ ++ VK +KPP+SR S+EL+++ GF+
Sbjct: 225 LDSMKLAFASVKHVKPPASRKESSELYVIATGFR 258
>gi|170746591|ref|YP_001752851.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
radiotolerans JCM 2831]
gi|170653113|gb|ACB22168.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
radiotolerans JCM 2831]
Length = 241
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 127/215 (59%), Gaps = 10/215 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ S WL+RQ DPYV +AK+E YR R+A+KLLEID + K LRPG K++D GAAPG
Sbjct: 26 RGRTLSQKRWLERQLNDPYVARAKREGYRSRAAYKLLEIDERYKLLRPGQKIVDLGAAPG 85
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA ++V P G V+ +D L I P+ G ++ DF P+ DRL +L
Sbjct: 86 GWSQVAARVVG--------PTGRVVGIDLLEIEPMAGVEFIT-LDFLDPEAPDRLTGML- 135
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMA NATG ++ DH I LA FA PG L K+ G L
Sbjct: 136 GGPADLVMSDMAANATGHKKTDHLRIIGLAETAAEFAREILGPGGAYLAKVLQGGTEGAL 195
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R ++ V+ +KP +SR+ S+EL++L G++G
Sbjct: 196 LTDLKRDFATVRHVKPAASRADSSELYVLATGYRG 230
>gi|298290958|ref|YP_003692897.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Starkeya novella DSM
506]
gi|296927469|gb|ADH88278.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Starkeya novella DSM
506]
Length = 236
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/211 (44%), Positives = 131/211 (62%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV +AK+E +R R+AFKLLEID K+K L+PGL+V+D GAAPG WSQV
Sbjct: 29 SSQKWLQRQLNDPYVARAKREGWRSRAAFKLLEIDDKLKLLKPGLRVVDLGAAPGGWSQV 88
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + V + + +G V+++D L I PI AV ++ DF + + DRL +L + D
Sbjct: 89 AAQRVK-----ATEGRGKVVAIDLLEIDPIP-AVDFAQLDFLKDEAPDRLKEMLGGEA-D 141
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA N TG R DH I L I FA PG + K++ G L +
Sbjct: 142 VVLSDMAANTTGHRATDHLRIVGLVELAIDFARQVLSPGGAFVAKVFQGGTENTLLAELK 201
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R ++ V+ +KP +SR+ SAEL+++ GF+G+
Sbjct: 202 RDFTTVRHIKPQASRADSAELYVVATGFRGR 232
>gi|340779414|ref|ZP_08699357.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter aceti NBRC 14818]
Length = 218
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 128/212 (60%), Gaps = 12/212 (5%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K + WL RQ DPYV A K+ +R R+AFKL+EID + ++PG +V+D GAAPG W
Sbjct: 4 KTTAQQRWLARQLNDPYVAAAHKQGWRSRAAFKLIEIDDRFHLIKPGQRVVDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+QVAVK SH V+ VD LP+ P+ GA ++ + DFT P++ DRL+ +L
Sbjct: 64 TQVAVKRGASH----------VIGVDLLPVDPVAGAEII-EGDFTDPELPDRLIEML-GG 111
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K D+VLSDMAPN TG DH I LA + FA G + K++ G + Q+ E
Sbjct: 112 KADLVLSDMAPNTTGHAPTDHMRIIGLAEGALDFAFDVLAEGGGFIAKVFQGGSEKQMLE 171
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + ++ V+ +KPP+SR S+EL+++ GF+
Sbjct: 172 PMKKLFASVRHVKPPASRKDSSELYVVATGFR 203
>gi|163852846|ref|YP_001640889.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
extorquens PA1]
gi|163664451|gb|ABY31818.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
extorquens PA1]
Length = 239
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 128/216 (59%), Gaps = 10/216 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ S WL+RQ DPYV +AK+E YR R+AFKLLEID + K L+PG +++D GAAPG
Sbjct: 23 RGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLLEIDERFKLLKPGQRIVDLGAAPG 82
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA +++ G ++ +D L I P+ GA ++ DF P +RL +L
Sbjct: 83 GWSQVAARILGESGR--------IVGIDLLEIEPMPGATFIT-LDFLDPSAPERLTELL- 132
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ D+VLSDMA N TG ++ DH I LA FA PG L K++ G L
Sbjct: 133 GGRADLVLSDMAANTTGHKKTDHLRIIGLAETAAAFAREILAPGGAYLAKVFQGGTEGDL 192
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ V+ +KP +SR+ S+EL++L GF+G+
Sbjct: 193 LTELKRDFATVRHVKPQASRADSSELYVLATGFRGE 228
>gi|220921508|ref|YP_002496809.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
nodulans ORS 2060]
gi|219946114|gb|ACL56506.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
nodulans ORS 2060]
Length = 255
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 129/216 (59%), Gaps = 3/216 (1%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV +AK+E YR R+A+KLLEID + L+PG +V+D GAAPG
Sbjct: 21 RGRTVSSKRWLERQLNDPYVARAKREGYRSRAAYKLLEIDERFHLLKPGYRVVDLGAAPG 80
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA V SH + +P+G V+ +D L I P+ G ++ DF RL+ +L
Sbjct: 81 GWSQVAAAKVGSH-PGAPKPRGRVVGIDLLEIEPLPGVDFIT-LDFLDATAPARLIELL- 137
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMA NATG ++ DH I LA FA PG L K+ G L
Sbjct: 138 GGPADLVMSDMAANATGHKKTDHLRIMGLAETAAAFAREVLAPGGAYLAKVLQGGTEGTL 197
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R +S V+ +KP +SR+ S+EL++L GF+G+
Sbjct: 198 LADLKRDFSAVRHVKPAASRADSSELYVLATGFRGE 233
>gi|357384019|ref|YP_004898743.1| cell division protein FtsJ / ribosomal RNA large subunit
methyltransferase J [Pelagibacterium halotolerans B2]
gi|351592656|gb|AEQ50993.1| cell division protein FtsJ / ribosomal RNA large subunit
methyltransferase J [Pelagibacterium halotolerans B2]
Length = 238
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 127/216 (58%), Gaps = 6/216 (2%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+RQ DPYV +A+ E +R RSA+KLLE+D K + L+PG++V+D GAAPG
Sbjct: 26 KKRTTSSTRWLQRQLNDPYVARARAEGWRARSAYKLLELDEKYELLKPGMRVVDLGAAPG 85
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAVK V S D + P V+ +D L + P+ GA +L K DFT D L +L
Sbjct: 86 GWCQVAVKAVKS---DPENPT--VVGIDYLEMDPVPGAALLQK-DFTDEDAPQALFDLLG 139
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K D+VLSDMA TG + DH I L +A+ PG + K++ G +L
Sbjct: 140 GHKADIVLSDMAAPTTGHKPTDHLRIIALVEIAADYALDVLAPGGTFVAKVFQGGTEHEL 199
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ KPPSSRS SAE +L+ RGFKG+
Sbjct: 200 LAMLKRNFATTFHAKPPSSRSESAETYLIARGFKGQ 235
>gi|240140172|ref|YP_002964649.1| ribosomal RNA large subunit methyltransferase J [Methylobacterium
extorquens AM1]
gi|254562611|ref|YP_003069706.1| ribosomal RNA large subunit methyltransferase J [Methylobacterium
extorquens DM4]
gi|418061826|ref|ZP_12699660.1| Ribosomal RNA large subunit methyltransferase E [Methylobacterium
extorquens DSM 13060]
gi|240010146|gb|ACS41372.1| Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
methyltransferase) [Methylobacterium extorquens AM1]
gi|254269889|emb|CAX25867.1| Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
methyltransferase) [Methylobacterium extorquens DM4]
gi|373564618|gb|EHP90713.1| Ribosomal RNA large subunit methyltransferase E [Methylobacterium
extorquens DSM 13060]
Length = 239
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 128/216 (59%), Gaps = 10/216 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ S WL+RQ DPYV +AK+E YR R+AFKLLEID + K L+PG +++D GAAPG
Sbjct: 23 RGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLLEIDERFKLLKPGQRIVDLGAAPG 82
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA +++ G ++ +D L I P+ GA ++ DF P +RL +L
Sbjct: 83 GWSQVAARILGESGR--------IVGIDLLEIEPMPGATFIT-LDFLDPSAPERLTELL- 132
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ D+VLSDMA N TG ++ DH I LA FA PG L K++ G L
Sbjct: 133 GGRADLVLSDMAANTTGHKKTDHLRIIGLAETAAVFAREILAPGGAYLAKVFQGGTEGDL 192
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ V+ +KP +SR+ S+EL++L GF+G+
Sbjct: 193 LTELKRDFATVRHVKPQASRADSSELYVLATGFRGE 228
>gi|218531672|ref|YP_002422488.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
extorquens CM4]
gi|218523975|gb|ACK84560.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
extorquens CM4]
Length = 239
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 128/216 (59%), Gaps = 10/216 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ S WL+RQ DPYV +AK+E YR R+AFKLLEID + K L+PG +++D GAAPG
Sbjct: 23 RGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLLEIDERFKLLKPGQRIVDLGAAPG 82
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA +++ G ++ +D L I P+ GA ++ DF P +RL +L
Sbjct: 83 GWSQVAARILGESGR--------IVGIDLLEIEPMPGATFIT-LDFLDPSAPERLTELL- 132
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ D+VLSDMA N TG ++ DH I LA FA PG L K++ G L
Sbjct: 133 GGRADLVLSDMAANTTGHKKTDHLRIIGLAETAAVFAREILAPGGAYLAKVFQGGTEGDL 192
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ V+ +KP +SR+ S+EL++L GF+G+
Sbjct: 193 LTELKRDFATVRHVKPQASRADSSELYVLATGFRGQ 228
>gi|83945237|ref|ZP_00957586.1| Ribosomal RNA large subunit methyltransferase J [Oceanicaulis sp.
HTCC2633]
gi|83851407|gb|EAP89263.1| Ribosomal RNA large subunit methyltransferase J [Oceanicaulis sp.
HTCC2633]
Length = 253
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 128/214 (59%), Gaps = 12/214 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ +SS LWL+RQ DPYV +AK+E YR R+A+KL+E+D K ++PG++V D GAAPG
Sbjct: 42 RGRKYSSKLWLERQLNDPYVARAKQEGYRSRAAYKLIELDDKFGLIKPGMRVADLGAAPG 101
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVA+K H V VD L I PI GA+++ + DFT+ +D+L L
Sbjct: 102 GWTQVALKRGAEH----------VAGVDLLEIEPIAGAILM-QLDFTEEGAEDKLKAAL- 149
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SD+AP TG + DH I L FA+ KPG + K++ G +L
Sbjct: 150 GGPADLVISDLAPWTTGHKSTDHLRIVALVETAAYFALDVLKPGGGFIAKVFQGGATGEL 209
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + +V+ KPP+SRS SAE FLL GF+
Sbjct: 210 LDLLKHRFEKVRHYKPPASRSESAETFLLATGFR 243
>gi|344924728|ref|ZP_08778189.1| cell division protein methyltransferase [Candidatus Odyssella
thessalonicensis L13]
Length = 226
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 125/215 (58%), Gaps = 6/215 (2%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + S WL+RQ DPYVQ+AK + YR R+A+KL+EID K K L+PG +V+D GA PG
Sbjct: 18 KKRTTSQRAWLERQLNDPYVQQAKSDGYRSRAAYKLIEIDQKFKILKPGQRVIDLGACPG 77
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAV+ V S PK V+ VD + I GA V + DFT+ + Q +L+ +L
Sbjct: 78 GWTQVAVERVKSQ----TNPKARVIGVDLTEMAAIAGATVF-QGDFTEEETQTKLIELL- 131
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K V+LSDMA A GM ++DH I L FA PG + K+ G L
Sbjct: 132 DGKAQVILSDMAAPACGMTDVDHIRIMVLVEEAFNFAENILAPGGAFVAKVLRGGTEANL 191
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + +V KPP+SR SAE++++G GFKG
Sbjct: 192 LKRLKLAFQKVTHFKPPASRKDSAEMYVIGIGFKG 226
>gi|347759875|ref|YP_004867436.1| ribosomal RNA large subunit 23S methyltransferase RrmJ
[Gluconacetobacter xylinus NBRC 3288]
gi|347578845|dbj|BAK83066.1| ribosomal RNA large subunit 23S methyltransferase RrmJ
[Gluconacetobacter xylinus NBRC 3288]
Length = 254
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 128/215 (59%), Gaps = 12/215 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + H WL+RQ DPYVQ A+K+ +R R+AFKL+E+D + ++PG +V+D GAAPG
Sbjct: 46 RGRTTAQHRWLQRQLNDPYVQAAQKQGWRSRAAFKLIELDDRFHLIQPGTRVVDLGAAPG 105
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAVK + V+ VD LP+ P+ GA V+ + DF P + RL +L
Sbjct: 106 GWTQVAVKRGAAE----------VVGVDLLPVDPVPGATVI-EGDFNDPAMPGRLTDLL- 153
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K D+V+SDMAPN TG DH I LA + FA + K++ G + Q+
Sbjct: 154 GGKADLVMSDMAPNTTGHAPTDHLRIIGLAELALDFATRILAQDGAFVAKVFQGGSEKQM 213
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R ++QV+ KPP+SR S+EL+++ GF+G
Sbjct: 214 LAELKRLFTQVRHAKPPASRKESSELYVVATGFRG 248
>gi|339021231|ref|ZP_08645339.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter tropicalis NBRC 101654]
gi|338751669|dbj|GAA08643.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter tropicalis NBRC 101654]
Length = 265
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 132/214 (61%), Gaps = 12/214 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + WL RQ DPYVQ A K+ +R R+AFKL+E+D + ++PG++V+D GAAPG
Sbjct: 54 RGRTTAQQRWLARQLNDPYVQAAHKQGWRSRAAFKLIELDDRFHLIKPGMRVVDLGAAPG 113
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV VK G + V+ VD LP+ P+ GA ++ + DFT P + +RL ++L
Sbjct: 114 GWTQVIVK----RGAER------VVGVDLLPVDPVAGAEII-EGDFTDPTMAERLTSLL- 161
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K D+VLSDMAPN TG DH I LA + FA G + K++ G + ++
Sbjct: 162 DGKADLVLSDMAPNTTGHGPTDHMRIIGLAQEALYFAFEILAEGGGFVAKVFQGGSEKEM 221
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + ++QV+ KPP+SR S+EL+++ GF+
Sbjct: 222 LDTLKQAFTQVRHAKPPASRKDSSELYVVATGFR 255
>gi|182678893|ref|YP_001833039.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182634776|gb|ACB95550.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 234
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 126/211 (59%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK+E R R+A+KL+EID + FL+PG KV+D GAAPG WSQV
Sbjct: 28 SSTLWLERQLNDPYVARAKREGMRSRAAYKLIEIDERYPFLKPGQKVVDLGAAPGGWSQV 87
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ V S+Q KG V+ +D L + P+ GA DF P + L L K D
Sbjct: 88 AVRKVQ-----SEQGKGRVIGIDLLEVDPMPGA-EFKVLDFLDPAAPETLEHWL-GAKAD 140
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA NATG ++ DH I L FA T PG L K+ G L +
Sbjct: 141 VVLSDMAANATGHKKTDHLRIVGLVELAADFASTILAPGGSFLAKVLQGGTENSLLAKLK 200
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ ++ V+ +KP +SR+ S+EL++L GF+GK
Sbjct: 201 QEFASVRHVKPQASRADSSELYMLATGFRGK 231
>gi|406921961|gb|EKD59639.1| hypothetical protein ACD_54C01226G0005 [uncultured bacterium]
Length = 250
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 132/219 (60%), Gaps = 2/219 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ KG+ SS LWL+RQ DPYV +AKKE +R R+A+K+ E+D K FL PG +V+D G
Sbjct: 19 KTAKGRKLSSTLWLERQLNDPYVIRAKKEGFRGRAAYKISELDDKYGFLVPGARVVDLGC 78
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAVK VN+ G + K+P G VL +D I PI GA + + DF D D LV
Sbjct: 79 APGGWCQVAVKRVNALGDNPKKPIGTVLGIDLQAIEPIAGAQI-HQLDFLS-DEADALVK 136
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
DVV+SDMA +A+G + DH I L A + FA + G + K+ G
Sbjct: 137 GWLGGPADVVMSDMAASASGHKGTDHLRIIALIEAALAFAFDVLEEGGTFVAKVLAGGAE 196
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+++ + + + +V +KPP+SR+ S+E F++ +GF+GK
Sbjct: 197 AEMQTQLKKSFDKVANVKPPASRADSSEKFVVAQGFRGK 235
>gi|393769849|ref|ZP_10358366.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium sp.
GXF4]
gi|392724671|gb|EIZ82019.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium sp.
GXF4]
Length = 241
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 127/214 (59%), Gaps = 10/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ S WL+RQ DPYV +AK+E YR R+A+KL+EID + K LRPG +V+D GAAPG
Sbjct: 26 RGRTLSQKRWLERQLNDPYVARAKREGYRSRAAYKLIEIDERYKLLRPGQRVVDLGAAPG 85
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA ++V + G V+ +D L I P+ G ++ DF P+ ++L T+L
Sbjct: 86 GWSQVAARIVGATGR--------VVGIDLLEIEPMAGVEFIT-LDFLDPEAPEKLTTLL- 135
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+VLSDMA NATG ++ DH I LA FA PG L K+ G L
Sbjct: 136 GGPADLVLSDMAANATGHKKTDHLRIIGLAETAAEFAREILAPGGAYLAKVLQGGTENAL 195
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ R ++ V+ +KP +SRS S+EL++L G++
Sbjct: 196 LADLKRDFTAVRHVKPAASRSDSSELYVLATGYR 229
>gi|258542575|ref|YP_003188008.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-01]
gi|384042496|ref|YP_005481240.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-12]
gi|384051013|ref|YP_005478076.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-03]
gi|384054121|ref|YP_005487215.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-07]
gi|384057355|ref|YP_005490022.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-22]
gi|384059996|ref|YP_005499124.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-26]
gi|384063288|ref|YP_005483930.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-32]
gi|384119298|ref|YP_005501922.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|421850363|ref|ZP_16283324.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus NBRC 101655]
gi|421854034|ref|ZP_16286672.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
gi|256633653|dbj|BAH99628.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-01]
gi|256636712|dbj|BAI02681.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-03]
gi|256639765|dbj|BAI05727.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-07]
gi|256642821|dbj|BAI08776.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-22]
gi|256645876|dbj|BAI11824.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-26]
gi|256648929|dbj|BAI14870.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-32]
gi|256651916|dbj|BAI17850.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654973|dbj|BAI20900.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus IFO 3283-12]
gi|371458800|dbj|GAB28527.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus NBRC 101655]
gi|371477696|dbj|GAB31875.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter pasteurianus subsp. pasteurianus LMG 1262 =
NBRC 106471]
Length = 263
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 12/214 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + WL RQ DPYVQ A K+ +R R+AFKL+E+D + +RPG++++D GAAPG
Sbjct: 53 RGRTTAQQRWLSRQLNDPYVQAAHKQGWRSRAAFKLIELDDRFHLIRPGMRIVDLGAAPG 112
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV VK S V+ VD LP+ P+ GA ++ + DFT P++ RL+++L
Sbjct: 113 GWTQVLVKRGASQ----------VVGVDLLPVEPVAGAEII-EGDFTDPEMDARLISML- 160
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K D+V+SDMAPN TG DH I LA + FA G + K++ G + +
Sbjct: 161 GGKADLVVSDMAPNTTGHAPTDHVRIIGLAEEALHFAFDILAEGGGFVAKVFQGGSEKAM 220
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ + ++QV+ KPP+SR S+EL+++ GF+
Sbjct: 221 LNTMKQAFTQVRHAKPPASRKDSSELYVVATGFR 254
>gi|340029386|ref|ZP_08665449.1| ribosomal RNA large subunit methyltransferase E [Paracoccus sp.
TRP]
Length = 261
Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 130/216 (60%), Gaps = 2/216 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS LWL+RQ DPYV +AK+E YR R+A+K++E+D K FL PG +V+D G APG
Sbjct: 29 KGRKLSSTLWLERQLNDPYVARAKREGYRGRAAYKIIELDDKFGFLVPGARVVDLGCAPG 88
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV VN+ G S + G VL VD + PI GA + + DF D D LV
Sbjct: 89 GWCQVAVSRVNALGDRSGKKVGRVLGVDLQEVDPIPGAEI-HQLDFLS-DGADDLVKAWL 146
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVV+SDMA ++G + DH I L A + A +PG + K+ G ++
Sbjct: 147 GGRADVVMSDMAAASSGHKATDHLRIVALVEAAAQLAFDVLEPGGTFVAKVLAGGAEAEM 206
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + R +S+V +KPP+SRS S+E F++ +GF+G+
Sbjct: 207 QVMLKRNFSKVANVKPPASRSDSSEKFVVAQGFRGR 242
>gi|158424996|ref|YP_001526288.1| 23S rRNA methylase [Azorhizobium caulinodans ORS 571]
gi|189044085|sp|A8II77.1|RLME_AZOC5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|158331885|dbj|BAF89370.1| 23S rRNA methylase [Azorhizobium caulinodans ORS 571]
Length = 240
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 7/215 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+ + SS WL+RQ DPYV +AK+E +R R+AFKL+E+D K+ L+ G++++D GAAPG
Sbjct: 21 RTRSSSSQKWLQRQLNDPYVARAKREGWRSRAAFKLIEMDEKLHVLKRGMRIVDLGAAPG 80
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA K + + + +G ++++D L + + G V+ ++ DF P +RL +L
Sbjct: 81 GWSQVAAKKIG-----AAEGQGKIVAIDLLEMDAVTG-VMFAQMDFLDPTAPERLFAML- 133
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K D+V+SDMA N TG ++ DH I L FA PG + K++ G L
Sbjct: 134 DGKADLVMSDMAANTTGHKKTDHLKIIALVELAADFARQVLAPGGAFIAKVFQGGTEGTL 193
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R Y+QV+ LKP +SR+ SAEL+L+ GF+G
Sbjct: 194 LADLKRDYAQVRHLKPAASRADSAELYLVATGFRG 228
>gi|329115331|ref|ZP_08244085.1| Ribosomal RNA large subunit methyltransferase E [Acetobacter
pomorum DM001]
gi|326695310|gb|EGE46997.1| Ribosomal RNA large subunit methyltransferase E [Acetobacter
pomorum DM001]
Length = 263
Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 129/214 (60%), Gaps = 12/214 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + WL RQ DPYVQ A K+ +R R+AFKL+E+D + +RPG++++D GAAPG
Sbjct: 53 RGRTTAQQRWLSRQLNDPYVQAAHKQGWRSRAAFKLIELDDRFHLIRPGMRIVDLGAAPG 112
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV VK + V+ VD LP+ P+ GA ++ + DFT P++ RL+++L
Sbjct: 113 GWTQVLVKRGAAQ----------VVGVDLLPVEPVTGAEII-EGDFTDPEMDARLISML- 160
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K D+V+SDMAPN TG DH I LA + FA G + K++ G + +
Sbjct: 161 GGKADLVVSDMAPNTTGHAPTDHVRIIGLAEEALHFAFDILAEGGGFVAKVFQGGSEKAM 220
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ + ++QV+ KPP+SR S+EL+++ GF+
Sbjct: 221 LNTMKQAFTQVRHAKPPASRKDSSELYVVATGFR 254
>gi|159044221|ref|YP_001533015.1| ribosomal RNA methyltransferase [Dinoroseobacter shibae DFL 12]
gi|157911981|gb|ABV93414.1| ribosomal RNA methyltransferase [Dinoroseobacter shibae DFL 12]
Length = 257
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 129/218 (59%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS LWL+RQ DPYVQKAK+E YR R+AFK+LEID + +FL PG +V+D G
Sbjct: 34 KTARGRKLSSTLWLERQLNDPYVQKAKREGYRGRAAFKILEIDERFRFLVPGARVVDLGC 93
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAV+ VN+ G S + +G VL VD I P+ GA DF + D D V
Sbjct: 94 APGGWCQVAVRRVNALGEKSGKAQGRVLGVDLKEIDPVPGAET-HVLDFME-DGADAQVK 151
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
K DVV+SDMA ++G ++ DH I L A A + G + K+ G
Sbjct: 152 AWLGGKADVVMSDMAAASSGHKQTDHLRIVALCEAAAHLAFDVLEEGGTFVAKVLAGGAE 211
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+L+ + R +++V +KP +SRS S+E F++ GF+G
Sbjct: 212 RELQTLLKRAFTKVINVKPDASRSDSSEKFVVATGFRG 249
>gi|110680244|ref|YP_683251.1| ribosomal RNA large subunit methyltransferase [Roseobacter
denitrificans OCh 114]
gi|123361756|sp|Q164M8.1|RLME_ROSDO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|109456360|gb|ABG32565.1| ribosomal RNA large subunit methyltransferase, putative
[Roseobacter denitrificans OCh 114]
Length = 240
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 132/219 (60%), Gaps = 2/219 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+A+K+LE+D + +FL PG +V+D G
Sbjct: 23 KTARGRKLSSTRWLQRQLNDPYVKRARSEGYRGRAAYKILELDDRFRFLVPGARVVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAVK VN+ G + + +G VL VD + PI GA L + DF D D V
Sbjct: 83 APGGWCQVAVKRVNALGERTSKAQGSVLGVDLQEMEPIAGA-TLYQLDFMADDA-DEQVR 140
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+ K DVV+SDMA +++G ++ DH I L A FA + G + K+ G
Sbjct: 141 VWLGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYFAFDVLEEGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+L++ + + +++V +KPP+SR S+E F++ GF+ K
Sbjct: 201 GELQKLLKQRFAKVANIKPPASRQDSSEKFVVATGFRAK 239
>gi|114771066|ref|ZP_01448506.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
bacterium HTCC2255]
gi|114548348|gb|EAU51234.1| ribosomal RNA large subunit methyltransferase J [alpha
proteobacterium HTCC2255]
Length = 236
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 130/216 (60%), Gaps = 2/216 (0%)
Query: 13 PKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAP 72
KG+ SS LWLKRQ DPYV +A KE YR R+AFK++E+D K +FL PG +++D G AP
Sbjct: 23 AKGRKLSSTLWLKRQLNDPYVARATKEGYRGRAAFKIMELDDKFRFLVPGARIVDLGCAP 82
Query: 73 GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL 132
G W QVAVK VN++G + G +L +D + PI+G + DF + D +++ L
Sbjct: 83 GGWCQVAVKRVNANGDKQGKKIGTILGIDLQEVDPIEGCEI-HVLDFMEDDADNKVKKWL 141
Query: 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
+ DVV+SDMA +A+G ++ DH I L FA + G + K+ G +
Sbjct: 142 GGN-ADVVMSDMAASASGHKQTDHIRIMALCETAAYFAFDVLEEGGTFVAKVLAGGAEGE 200
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L++ + +++V +KPPSSR+ S+E F++ GF+G
Sbjct: 201 LQKLLKEKFTKVYHMKPPSSRADSSEKFVVATGFRG 236
>gi|114762829|ref|ZP_01442261.1| ribosomal RNA large subunit methyltransferase J [Pelagibaca
bermudensis HTCC2601]
gi|114544439|gb|EAU47446.1| ribosomal RNA large subunit methyltransferase J [Roseovarius sp.
HTCC2601]
Length = 238
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 128/215 (59%), Gaps = 2/215 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV++AK E YR R+AFK+LE+D K +FL PG +V+D G APG
Sbjct: 26 RGRTTSSTRWLQRQLNDPYVKRAKDEGYRGRAAFKILELDEKYRFLVPGARVVDLGCAPG 85
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV VN+ G S + +G VL VD + PI GA + + DF + D++ L
Sbjct: 86 GWCQVAVPRVNALGERSGKAQGFVLGVDLQEVLPIPGAEI-HQLDFMEEGADDKVKAWL- 143
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DVV+SDMA +++G ++ DH I L A A + G + K+ G L
Sbjct: 144 GGKADVVMSDMAASSSGHKQTDHLRIISLCEAAAELAFDVLEEGGTFVAKVLAGGAEQGL 203
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + + +V +KPP+SRS S+E F++ GF+G
Sbjct: 204 QALLKKRFDKVANVKPPASRSDSSEKFVVATGFRG 238
>gi|308464733|ref|XP_003094631.1| hypothetical protein CRE_31467 [Caenorhabditis remanei]
gi|308247098|gb|EFO91050.1| hypothetical protein CRE_31467 [Caenorhabditis remanei]
Length = 227
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 123/210 (58%), Gaps = 15/210 (7%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
+++RQ +D + KA++ NYR RSAFKL+EID K KFL+P V+D G APGSW QV V+
Sbjct: 28 YIQRQSSDEFAVKAREHNYRARSAFKLMEIDEKFKFLKPESTVIDIGCAPGSWIQVVVE- 86
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
K P G VL VD + PI GA +LS+ D T P++ ++ LK+ +LDVVLS
Sbjct: 87 --------KCPNGYVLGVDLQNVLPIRGAEILSQSDVTSPEVHLKIREKLKNRQLDVVLS 138
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRF-----AVTYSKPGADCLIKIWDGRNRPQLEESI 197
DMAPN TG DH + +L V R + + G L KIWDG R +
Sbjct: 139 DMAPNPTGDNATDHLRLIELCRTVFRLFSEENCIELKRNGV-FLCKIWDGAARGDFIREL 197
Query: 198 TRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ ++ VK +KP + R +SAE++L RGFK
Sbjct: 198 SERFATVKTVKPTACRDNSAEMYLFCRGFK 227
>gi|407778884|ref|ZP_11126145.1| 23S rRNA methyltransferase J [Nitratireductor pacificus pht-3B]
gi|407299420|gb|EKF18551.1| 23S rRNA methyltransferase J [Nitratireductor pacificus pht-3B]
Length = 268
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 124/216 (57%), Gaps = 7/216 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G +SS WL+R DPYV +A+ E R R+A+KL+EID + K L PG+ V+D GAAPG
Sbjct: 34 RGLKNSSRRWLERHLNDPYVHRAQAEGMRSRAAYKLIEIDDRHKILSPGMLVIDLGAAPG 93
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVA + V + ++P+ V +D L + P+ GAVVL + DF D RLV L
Sbjct: 94 GWCQVAAERVKA---TPERPR--VAGIDYLGMDPVPGAVVL-EMDFLDADAPARLVETLG 147
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D DVVLSDMA TG R DH L FAV+ KPG L K + G L
Sbjct: 148 DAP-DVVLSDMAAPTTGHRRTDHMRTMHLCEVAADFAVSVLKPGGHFLAKTFQGGTEAGL 206
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + R + V +KPP+SR S EL+LL +GFKG+
Sbjct: 207 LDMLKRNFRSVHHVKPPASRGESVELYLLAKGFKGR 242
>gi|119386697|ref|YP_917752.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paracoccus denitrificans
PD1222]
gi|143460965|sp|A1B962.1|RLME_PARDP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|119377292|gb|ABL72056.1| 23S rRNA Um-2552 2'-O-methyltransferase [Paracoccus denitrificans
PD1222]
Length = 256
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 130/216 (60%), Gaps = 2/216 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS LWL+RQ DPYV +AK+E YR R+A+K+LE+D K +FL PG +V+D G APG
Sbjct: 29 KGRKLSSTLWLERQLNDPYVARAKREGYRGRAAYKILELDDKYRFLVPGARVVDLGCAPG 88
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV VN+ G S + G VL VD + PI GA + + DF +++ L
Sbjct: 89 GWCQVAVARVNALGDKSGKKVGRVLGVDLQEVDPIPGAEI-HQLDFLSEGADEQVKAWL- 146
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVV+SDMA ++G + DH I L A + A +PG + K+ G ++
Sbjct: 147 GGRADVVMSDMAAASSGHKGTDHLRIVALVEAAAQLAFDVLEPGGTFVAKVLAGGAENEM 206
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + R + +V +KPP+SRS S+E F++ +GF+G+
Sbjct: 207 QAMLKRNFRKVANVKPPASRSDSSEKFVVAQGFRGR 242
>gi|217977510|ref|YP_002361657.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylocella silvestris
BL2]
gi|217502886|gb|ACK50295.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylocella silvestris
BL2]
Length = 237
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 124/210 (59%), Gaps = 2/210 (0%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK+E +R R+A+KL+EID + FLRPG K++D GAAPG WSQV
Sbjct: 27 SSTLWLQRQLNDPYVAQAKREGFRSRAAYKLIEIDDRFHFLRPGQKIIDLGAAPGGWSQV 86
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + + + + ++ +D LPI + GA DF +P+ RL+T K D
Sbjct: 87 AAVRTGAAQGEGQTGRARIIGIDLLPIETLPGA-EFKVMDFLEPE-APRLLTEWLGGKAD 144
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA NATG ++ DH I L FA PG L K+ G L +
Sbjct: 145 VVLSDMAANATGHKKTDHLRIVGLVELAGDFACEALAPGGAFLAKVLQGGTENVLLAKLK 204
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ V+ +KP +SR+ S+EL++L GF+G
Sbjct: 205 RDFAVVRHVKPQASRADSSELYVLATGFRG 234
>gi|84503534|ref|ZP_01001585.1| ribosomal RNA large subunit methyltransferase J [Oceanicola
batsensis HTCC2597]
gi|84388024|gb|EAQ01072.1| ribosomal RNA large subunit methyltransferase J [Oceanicola
batsensis HTCC2597]
Length = 238
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 131/218 (60%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYVQ+AK E YR R+AFK++EID K +FL PG +V+D G
Sbjct: 23 KTARGRKLSSTRWLQRQLNDPYVQRAKAEGYRGRAAFKIMEIDDKFRFLVPGARVVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAV +N+ G + +G ++ VD + P+ GA + + DF D +++ T
Sbjct: 83 APGGWLQVAVPRINALGEKQGKAQGRIIGVDLQEVEPLPGAEI-HQLDFMADDADEQVKT 141
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L + DVV+SDMA ++G ++ DH I L A FA PG + K+ G
Sbjct: 142 WLGGEA-DVVMSDMAAASSGHKQTDHLRIISLCEAAAYFAFDVLAPGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+L++ + + + +V +KPP+SR+ S+E F++ GF+G
Sbjct: 201 GELQKLLKQKFDKVANMKPPASRADSSEKFVVATGFRG 238
>gi|407977160|ref|ZP_11158049.1| 23S rRNA methyltransferase J [Nitratireductor indicus C115]
gi|407427393|gb|EKF40088.1| 23S rRNA methyltransferase J [Nitratireductor indicus C115]
Length = 247
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 124/216 (57%), Gaps = 7/216 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G +SS WL+R DPYV +A+ E R R+A+KL EID + K L+PG +V+D GAAPG
Sbjct: 22 RGLKNSSRRWLERHLNDPYVHRAQAEGMRSRAAYKLTEIDDRYKLLKPGARVIDLGAAPG 81
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV+ V S + LV+ +D L + P+ GAVVL + DF D DRL+ L
Sbjct: 82 GWCQVAVERVG-----STEEAPLVVGIDYLGMDPVPGAVVL-EMDFLDDDAPDRLMETLG 135
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D DVVLSDMA TG R DH L FA++ KPG L K + G L
Sbjct: 136 DAP-DVVLSDMAAPTTGHRRTDHIRTMHLCETAADFAMSVLKPGGHFLAKTFQGGAENSL 194
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
E + + + V +KP +SR+ S EL+LL + FKG+
Sbjct: 195 LEQLKKNFRSVHHVKPQASRAESVELYLLAKDFKGR 230
>gi|316934646|ref|YP_004109628.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris DX-1]
gi|315602360|gb|ADU44895.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris DX-1]
Length = 237
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 122/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ YR R+A+KL EID K + L+PG+ V+D GAAPG WSQV
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKPGMAVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + + +G V+++D L + + G V ++ DF P DRL +L D
Sbjct: 82 AAKKVGAA-----EGRGKVVAIDLLEMGEVPG-VTFAQLDFLDPSAPDRLRDMLGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N TG R+ D I L FA KPG L K++ L +
Sbjct: 135 LVMSDMAANTTGHRKTDQLRIVGLVETAAMFAAEVLKPGGAFLAKVFQSGADAALMAELK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R Y+ VK +KP +SR S+E +LL GF+G
Sbjct: 195 RDYASVKHVKPAASRKDSSERYLLATGFRG 224
>gi|296445113|ref|ZP_06887073.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylosinus
trichosporium OB3b]
gi|296257287|gb|EFH04354.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylosinus
trichosporium OB3b]
Length = 235
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 124/211 (58%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ YR R+A+KLLE+D + RPG ++ D GAAPG WSQ+
Sbjct: 28 SSTLWLERQLNDPYVAQAKRDGYRSRAAYKLLELDERFHLFRPGQRIADLGAAPGGWSQI 87
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + V + Q KG V+ +D L + P+ G V + DF D +R+ +L D
Sbjct: 88 AARKVG-----AGQGKGRVVGIDLLEMEPVQG-VEFTVMDFNDADAPERIKEML-GGPAD 140
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
V+SDMA NATG ++ DH I LA + FA PG + K+ G L +
Sbjct: 141 GVMSDMAANATGHKQTDHLKIVALAELAVEFAREVLAPGGFFVAKVLQGGTEHTLLAELK 200
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R ++ V+ +KP +SR+ SAEL++L GF+G+
Sbjct: 201 RDFAVVRHVKPAASRADSAELYVLATGFRGR 231
>gi|423713186|ref|ZP_17687446.1| ribosomal RNA large subunit methyltransferase E [Bartonella
vinsonii subsp. arupensis OK-94-513]
gi|52355215|gb|AAU44782.1| FtsJ [Bartonella vinsonii subsp. arupensis]
gi|395423842|gb|EJF90031.1| ribosomal RNA large subunit methyltransferase E [Bartonella
vinsonii subsp. arupensis OK-94-513]
Length = 240
Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 127/211 (60%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + KFL+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV++V S + ++P V+ +D L + P+ G V+L K DF D +L+ L +K D
Sbjct: 94 AVRVVGS---NDQKPS--VVGIDYLHVNPLPGVVML-KMDFLHADAPQKLIDAL-GEKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L FA++ KPG L K + G L ++
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTVYLCEVAADFALSVLKPGGHFLAKAFQGGAENTLLTTLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SRS S EL+LL GFKGK
Sbjct: 207 QNFKTVHHVKPPASRSESVELYLLALGFKGK 237
>gi|406979651|gb|EKE01397.1| ribosomal RNA large subunit methyltransferase J [uncultured
bacterium]
Length = 209
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 125/211 (59%), Gaps = 9/211 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS+ WLK F+D YV+KAK+E +R RS +KL EI + K ++P + V+D GAAPG W
Sbjct: 3 KSKSSNRWLKEHFSDIYVKKAKQEGFRARSVYKLSEIQERYKIIKPNMFVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
S+ AV+LV PKG + ++D LP+ PI G V + DFTQ D+ L L +
Sbjct: 63 SEYAVQLV--------APKGKIFALDILPMQPIKG-VDFIQGDFTQDDVVKDLHARLNGE 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+DVVLSDMAPN +G+ +D L + FA KPG L KI+ G +
Sbjct: 114 KIDVVLSDMAPNLSGLSVVDQSRSINLVEIALAFAQKGLKPGGVFLTKIFQGAGFENFVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
++ + +VK++KP +SR+ S E+FLL R F
Sbjct: 174 NLRHSFGEVKVIKPDASRARSKEIFLLARDF 204
>gi|83942234|ref|ZP_00954695.1| ribosomal RNA large subunit methyltransferase J [Sulfitobacter sp.
EE-36]
gi|83955469|ref|ZP_00964100.1| ribosomal RNA large subunit methyltransferase J [Sulfitobacter sp.
NAS-14.1]
gi|83840113|gb|EAP79288.1| ribosomal RNA large subunit methyltransferase J [Sulfitobacter sp.
NAS-14.1]
gi|83846327|gb|EAP84203.1| ribosomal RNA large subunit methyltransferase J [Sulfitobacter sp.
EE-36]
Length = 262
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 128/215 (59%), Gaps = 2/215 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV++A E YR R+A+K++E+D K +FL PG +V+D GAAPG
Sbjct: 41 RGRKLSSTRWLQRQLNDPYVKRANAEGYRGRAAYKIMELDDKYRFLVPGARVVDLGAAPG 100
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAVK N G + G +L +D + PI G L + DF + D D +V
Sbjct: 101 GWCQVAVKRCNVLGEKKGKNVGTILGIDLQEMEPIAG-CELHQLDFMEDDA-DEIVKGWL 158
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DVV+SDMA +++G ++ DH+ I L A FA + G + K+ G L
Sbjct: 159 GGKADVVMSDMAASSSGHKQTDHNRIIALCEAAAYFAFDVLEDGGTFVAKVLAGGAEGDL 218
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + R +++V +KPP+SRS S+E F++ GFKG
Sbjct: 219 QQLLKRRFTKVANIKPPASRSDSSEKFVVATGFKG 253
>gi|154251621|ref|YP_001412445.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Parvibaculum
lavamentivorans DS-1]
gi|189040318|sp|A7HSA5.1|RLME_PARL1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|154155571|gb|ABS62788.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Parvibaculum
lavamentivorans DS-1]
Length = 254
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 127/216 (58%), Gaps = 4/216 (1%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SS WL+RQ DPYV AK+E YR R+AFKL EID K +FL+PG +V+D G APG W
Sbjct: 32 RSNSSTRWLQRQLNDPYVHAAKREGYRSRAAFKLAEIDDKYRFLKPGGRVVDLGCAPGGW 91
Query: 76 SQVAVKLVNSHGYD--SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
QVAV V + G D ++ G V+ +D L + P+ GA +L + DF D++ +L
Sbjct: 92 CQVAVARVKAEGGDAGAEGRHGRVIGLDYLEMDPVPGATIL-QLDFLSEGADDQVKELLA 150
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVVLSDMA TG ++ DH I L FA PG L K+ G +L
Sbjct: 151 GEA-DVVLSDMAAPTTGHKQTDHMRIMSLCEIAAHFATEVLAPGGTFLAKVLRGGTENEL 209
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V+ +KP +SR+ SAE+++L +GFKG+
Sbjct: 210 LVLLKQHFKTVRHVKPKASRADSAEMYVLAQGFKGR 245
>gi|255263254|ref|ZP_05342596.1| ribosomal RNA large subunit methyltransferase J [Thalassiobium sp.
R2A62]
gi|255105589|gb|EET48263.1| ribosomal RNA large subunit methyltransferase J [Thalassiobium sp.
R2A62]
Length = 237
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 130/215 (60%), Gaps = 2/215 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS LWL+RQ DPYV++AK + YR R+A+K+LE+D K +FL PG +++D GAAPG
Sbjct: 25 RGRKMSSTLWLQRQLNDPYVKRAKADGYRGRAAYKILELDDKYRFLVPGARIVDLGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAVK N G + + +G +L VD + PI G L + DF + D ++ L
Sbjct: 85 GWCQVAVKRCNVLGQKTSKAQGTILGVDLQEMEPIAG-CELHQLDFMEDDADLKVKEWL- 142
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DVV+SDMA +A+G ++ DH I L A FA + G + K+ G L
Sbjct: 143 GGKADVVMSDMAASASGHKQTDHLRIIALCEAAAYFAFDVLEEGGTFVAKVLAGGAEGDL 202
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + +++V +KPP+SRS S+E F++ GFKG
Sbjct: 203 QKLLKTKFTKVANVKPPASRSDSSEKFVVATGFKG 237
>gi|77463326|ref|YP_352830.1| 23S rRNA methylase [Rhodobacter sphaeroides 2.4.1]
gi|123592015|sp|Q3J2Q5.1|RLME_RHOS4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|77387744|gb|ABA78929.1| 23S rRNA methylase [Rhodobacter sphaeroides 2.4.1]
Length = 244
Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 2/216 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS LWL+RQ DPYV +AKKE YR R+A+K+LE+D K FL+PG +V+D G APG
Sbjct: 22 KGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDDKFGFLKPGGRVVDLGCAPG 81
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV+ VN+ G +P+G VL VD + PI GA + + DF D +++ L
Sbjct: 82 GWCQVAVERVNALGQKKNKPEGTVLGVDLQEVEPISGAEI-HQLDFLSDDADEKVKGWL- 139
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVV+SDMA A+G + DH I L A FA + G + K+ G +L
Sbjct: 140 GGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEEGGTFVAKVLAGGAENEL 199
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +++V +KPP+SR+ S+E F++ GF+G+
Sbjct: 200 QALLKKNFTKVANVKPPASRADSSEKFVVAMGFRGR 235
>gi|126462182|ref|YP_001043296.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodobacter sphaeroides
ATCC 17029]
gi|332558204|ref|ZP_08412526.1| ribosomal RNA large subunit methyltransferase E [Rhodobacter
sphaeroides WS8N]
gi|158513438|sp|A3PJK8.1|RLME_RHOS1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|126103846|gb|ABN76524.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodobacter sphaeroides
ATCC 17029]
gi|332275916|gb|EGJ21231.1| ribosomal RNA large subunit methyltransferase E [Rhodobacter
sphaeroides WS8N]
Length = 244
Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 132/218 (60%), Gaps = 2/218 (0%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
KG+ SS LWL+RQ DPYV +AKKE YR R+A+K+LE+D K FL+PG +V+D G A
Sbjct: 20 TAKGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDDKFGFLKPGGRVVDLGCA 79
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
PG W QVAV+ VN+ G +P+G VL VD + PI GA + + DF D +++
Sbjct: 80 PGGWCQVAVERVNALGQRKNKPEGTVLGVDLQEVEPISGAEI-HQLDFLSDDADEKVKGW 138
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L + DVV+SDMA A+G + DH I L A FA + G + K+ G
Sbjct: 139 L-GGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEEGGTFVAKVLAGGAEN 197
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+L+ + + +++V +KPP+SR+ S+E F++ GF+G+
Sbjct: 198 ELQALLKKNFTKVANVKPPASRADSSEKFVVAMGFRGR 235
>gi|268575662|ref|XP_002642810.1| Hypothetical protein CBG21206 [Caenorhabditis briggsae]
Length = 210
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 121/216 (56%), Gaps = 20/216 (9%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
+++RQ D + KA++ NYR RSAFKL+EI+ K KFLRPG+ V+D G APGSW QV V
Sbjct: 4 YIQRQSTDEFTVKAREHNYRARSAFKLIEINEKFKFLRPGITVVDVGCAPGSWLQVVV-- 61
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL--KDDKLDVV 140
K P G L +D + PI GA +LS+ D T P+IQ ++ L + +DVV
Sbjct: 62 -------DKCPNGYALGLDLQNVLPIRGADILSQSDVTSPEIQAKIREKLQMRQGTVDVV 114
Query: 141 LSDMAPNATGMREMDHDLITQLAIAVIRF---------AVTYSKPGADCLIKIWDGRNRP 191
LSDMAPN TG E DH + L V R A S+ L KIWDG R
Sbjct: 115 LSDMAPNPTGDSETDHLRLIDLCRTVFRLFSKENTVENAFELSRKNGVFLCKIWDGSGRG 174
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ ++ +S VK +KP + R SAEL+L RGF+
Sbjct: 175 EFVRELSDRFSMVKTMKPMACRDMSAELYLFCRGFR 210
>gi|407785656|ref|ZP_11132803.1| 23S rRNA methyltransferase J [Celeribacter baekdonensis B30]
gi|407202606|gb|EKE72596.1| 23S rRNA methyltransferase J [Celeribacter baekdonensis B30]
Length = 234
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 129/215 (60%), Gaps = 2/215 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS LWL+RQ DPYV++A E YR R+AFK+LE+D K +FL PG +V+D G APG
Sbjct: 22 RGRKLSSTLWLERQLNDPYVKRAHDEGYRGRAAFKILELDDKFRFLVPGARVVDLGCAPG 81
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAVK VN+ G S + G +L VD + PI G + + DF + D ++ L
Sbjct: 82 GWCQVAVKRVNALGEKSGKKIGTILGVDLQQVDPIAGTEI-HQLDFMEDDADQKVKDWLG 140
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVV+SDMA ++G ++ DH I L A FA +PG + K+ G L
Sbjct: 141 GNA-DVVMSDMAAASSGHKQTDHLRIMALCEAAAYFAFDVLEPGGTFVAKVLAGGAEGDL 199
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + + + +V +KPP+SRS S+E F++ GF+G
Sbjct: 200 QKLLKQKFEKVVHVKPPASRSDSSEKFVVATGFRG 234
>gi|374331032|ref|YP_005081216.1| Ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
FO-BEG1]
gi|359343820|gb|AEV37194.1| Ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
FO-BEG1]
Length = 233
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 126/214 (58%), Gaps = 6/214 (2%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SS LWL+RQ DPYV++AK + YR R+A+KL+EI+ K + L+PG++V+D G APG W
Sbjct: 25 RSNSSTLWLQRQLNDPYVRRAKVDGYRSRAAYKLIEINEKHEILKPGMRVVDLGCAPGGW 84
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+ +V S D LV+ +D L + PI G V+L K DF D D L+ L
Sbjct: 85 SQLTAPIVGSTDDDP-----LVVGIDYLEVEPIPGVVILQK-DFLDDDAPDELMKALGGH 138
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+V+SDMA TG R+ DH T L I FA G L K++ G L +
Sbjct: 139 RPDLVMSDMAAPTTGHRQTDHLRTTYLFEIAIDFARQNLNEGGTFLSKVFAGGAEANLLQ 198
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V +KPP+SR S E+F+L RG++GK
Sbjct: 199 DLKKEFKSVVHIKPPASRKGSPEMFILARGYRGK 232
>gi|221639177|ref|YP_002525439.1| Ribosomal RNA large subunit methyltransferase J [Rhodobacter
sphaeroides KD131]
gi|221159958|gb|ACM00938.1| Ribosomal RNA large subunit methyltransferase J [Rhodobacter
sphaeroides KD131]
Length = 229
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 2/216 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS LWL+RQ DPYV +AKKE YR R+A+K+LE+D K FL+PG +V+D G APG
Sbjct: 7 KGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDDKFGFLKPGGRVVDLGCAPG 66
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV+ VN+ G +P+G VL VD + PI GA + + DF D +++ L
Sbjct: 67 GWCQVAVERVNALGQKKNKPEGTVLGVDLQEVEPISGAEI-HQLDFLSDDADEKVKGWL- 124
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVV+SDMA A+G + DH I L A FA + G + K+ G +L
Sbjct: 125 GGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEEGGTFVAKVLAGGAENEL 184
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +++V +KPP+SR+ S+E F++ GF+G+
Sbjct: 185 QALLKKNFTKVANVKPPASRADSSEKFVVAMGFRGR 220
>gi|260575119|ref|ZP_05843120.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodobacter sp. SW2]
gi|259022741|gb|EEW26036.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodobacter sp. SW2]
Length = 246
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 126/216 (58%), Gaps = 2/216 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS LWL+RQ DPYV +AKKE YR R+AFK+LE+D K FL+PG +V+D G APG
Sbjct: 26 KGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAFKILELDDKYGFLKPGARVVDLGCAPG 85
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV VN+ +P G VL VD + PI GA + + DF D D LV
Sbjct: 86 GWCQVAVGRVNALAERKNKPVGTVLGVDLQEVEPIAGAQI-HQLDFLADD-ADALVKGWL 143
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DVV+SDMA A+G + DH I L A +FA + G + K+ G L
Sbjct: 144 GGPADVVMSDMAAAASGHKGTDHLRIIALCEAAAQFAFDVLEEGGTFVAKVLAGGAEIGL 203
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + + +V +KPP+SR+ S+E F++ G++G+
Sbjct: 204 QTMLKQNFDKVANVKPPASRADSSEKFVVAMGYRGR 239
>gi|254473353|ref|ZP_05086750.1| ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
JE062]
gi|211957469|gb|EEA92672.1| ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
JE062]
Length = 233
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 126/214 (58%), Gaps = 6/214 (2%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SS LWL+RQ DPYV++AK + YR R+A+KL+EI+ K + L+PG++V+D G APG W
Sbjct: 25 RSNSSTLWLQRQLNDPYVRRAKVDGYRSRAAYKLIEINEKHEILKPGMRVVDLGCAPGGW 84
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+ +V S D LV+ +D L + PI G V+L K DF D D L+ L
Sbjct: 85 SQLTAPIVGSTDDDP-----LVVGIDYLEVEPIPGVVILQK-DFLDDDAPDELMKALGGH 138
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+V+SDMA TG R+ DH T L I FA G L K++ G L +
Sbjct: 139 RPDLVMSDMAAPTTGHRQTDHLRTTYLFEIAIDFARQNLNEGGTFLSKVFAGGAEASLLQ 198
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V +KPP+SR S E+F+L RG++GK
Sbjct: 199 DLKKEFKSVVHIKPPASRKGSPEMFILARGYRGK 232
>gi|149915184|ref|ZP_01903712.1| ribosomal RNA large subunit methyltransferase, putative
[Roseobacter sp. AzwK-3b]
gi|149810905|gb|EDM70744.1| ribosomal RNA large subunit methyltransferase, putative
[Roseobacter sp. AzwK-3b]
Length = 238
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/232 (38%), Positives = 136/232 (58%), Gaps = 8/232 (3%)
Query: 3 STTGPKLKEV------PKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKI 56
+T+G L+++ +G+ SS WL+RQ DPYVQ+A+ E YR R+A+K++E+D K
Sbjct: 9 NTSGRGLRDLTVKVKTARGRKASSTRWLQRQLNDPYVQRAQAEGYRGRAAYKIMELDDKF 68
Query: 57 KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSK 116
+FL PG +V+D G APG W QVAV +N+ G S + +G +L +D + PI G VL +
Sbjct: 69 RFLVPGARVVDLGCAPGGWCQVAVPRINALGDKSGKAQGFILGIDLQEVEPIAG-CVLKQ 127
Query: 117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKP 176
DF D D LV K DVV+SDMA ++G ++ DH I L A A
Sbjct: 128 LDFMADDA-DVLVKEWLGGKADVVMSDMAAASSGHKQTDHLRIIALCEAAAYLAFDVLDE 186
Query: 177 GADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
G + K+ G +L++ + + +++V +KPP+SR+ S+E F++ GFKG
Sbjct: 187 GGTFVSKVLAGGAEGELQKLLKQRFTKVANVKPPASRADSSEKFVVATGFKG 238
>gi|429206517|ref|ZP_19197783.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Rhodobacter sp. AKP1]
gi|428190558|gb|EKX59104.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Rhodobacter sp. AKP1]
Length = 244
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 130/216 (60%), Gaps = 2/216 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS LWL+RQ DPYV +AKKE YR R+A+K+LE+D K FL+PG +V+D G APG
Sbjct: 22 KGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDDKFGFLKPGGRVVDLGCAPG 81
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV+ VN+ G +P+G VL VD + PI GA + + DF D D V
Sbjct: 82 GWCQVAVERVNALGQKKNKPEGTVLGVDLQEVEPISGAEI-HQLDFLS-DYADEKVKGWL 139
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVV+SDMA A+G + DH I L A FA + G + K+ G +L
Sbjct: 140 GGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEEGGTFVAKVLAGGAENEL 199
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +++V +KPP+SR+ S+E F++ GF+G+
Sbjct: 200 QALLKKNFTKVANVKPPASRADSSEKFVVAMGFRGR 235
>gi|56696734|ref|YP_167095.1| ribosomal RNA large subunit methyltransferase J [Ruegeria pomeroyi
DSS-3]
gi|81349883|sp|Q5LSB0.1|RLME_SILPO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|56678471|gb|AAV95137.1| ribosomal RNA large subunit methyltransferase J [Ruegeria pomeroyi
DSS-3]
Length = 233
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 130/218 (59%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+AFK+LE+D K +FL PG +V+D G
Sbjct: 18 KTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAFKILELDEKYRFLVPGARVVDLGC 77
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAVK VN+ G S + G VL +D + PI GA + + DF DR+
Sbjct: 78 APGGWCQVAVKRVNALGERSDKRVGRVLGIDLQEVEPIAGAEI-HQLDFLDDGADDRIKE 136
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L K DVV+SDMA +++G ++ DH I L A A + G + K+ G
Sbjct: 137 WL-GGKADVVMSDMAASSSGHKQTDHMRIIALCEAAAYLAFDVLEEGGTFVAKVLAGGAE 195
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L++ + + +++V +KPP+SRS S+E F++ GF+G
Sbjct: 196 GDLQKLLKQKFTKVANVKPPASRSDSSEKFVVATGFRG 233
>gi|126729852|ref|ZP_01745665.1| ribosomal RNA large subunit methyltransferase J [Sagittula stellata
E-37]
gi|126709971|gb|EBA09024.1| ribosomal RNA large subunit methyltransferase J [Sagittula stellata
E-37]
Length = 236
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 127/218 (58%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS LWL+RQ DPYV++AK+E YR R+AFK+LEID K +FL PG +V+D G
Sbjct: 21 KTARGRKLSSTLWLQRQLNDPYVKRAKEEGYRGRAAFKILEIDEKYRFLVPGARVVDLGC 80
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVA + VNS G + +G VL +D + I G V L + DF + D++
Sbjct: 81 APGGWCQVAARRVNSLGEKPGKAQGFVLGIDLQEVDAIAG-VELHQLDFLEDGADDKVKG 139
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L VV+SDMA ++G ++ DH I L A A + G + K+ G
Sbjct: 140 WL-GGSAHVVMSDMAAASSGHKQTDHLRIITLCEAAAELAFDVLEEGGTFVAKVLAGGAE 198
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L+ ++ R +++V KPP+SRS S+E F++ GF+G
Sbjct: 199 GTLQATLKRRFAKVANFKPPASRSDSSEKFVVATGFRG 236
>gi|451941441|ref|YP_007462078.1| cell division protein ftsJ [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451900828|gb|AGF75290.1| cell division protein ftsJ [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 242
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + KFL+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV +V S K V+ +D L + P+ G V+L K DF D +L+ L+ K D
Sbjct: 94 AVGIVG-----SSDQKTSVVGIDYLHVNPLPGVVML-KMDFLHADAPQKLIDALR-AKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L FA++ KPG L K + G L ++
Sbjct: 147 VVLSDMAAPTTGHRQTDHLKTVYLCEVAADFALSVLKPGGHFLAKAFQGGAENSLLTTLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SRS S EL+LL GFKGK
Sbjct: 207 QNFKTVHHVKPPASRSESVELYLLALGFKGK 237
>gi|354594103|ref|ZP_09012146.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Commensalibacter intestini A911]
gi|353673214|gb|EHD14910.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Commensalibacter intestini A911]
Length = 236
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 127/215 (59%), Gaps = 12/215 (5%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G+ S WL RQ DPYV+ A+++ +R R+AFKL+E+D K KFLRPGLKV+D GAAPG
Sbjct: 32 GRSTSQQRWLTRQLNDPYVRAAQQQGWRSRAAFKLIELDEKFKFLRPGLKVVDLGAAPGG 91
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQVAV + V+ +D L + PI GA ++ + DFT P+ D L+ L
Sbjct: 92 WSQVAVFRKATK----------VVGIDLLAVDPIPGAEII-QGDFTDPENMDILINKL-G 139
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
K D+V+SDMAPN TG DH I L + FA+ + K++ G + ++
Sbjct: 140 GKADLVMSDMAPNTTGHAATDHIRIIDLTKDALIFALDILNLQGIFIAKVFQGGSEKEML 199
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+++ + + VK KPP+SR S EL+++ GFKGK
Sbjct: 200 DTLKKSFKVVKHAKPPASRKESKELYVIATGFKGK 234
>gi|260427088|ref|ZP_05781067.1| ribosomal RNA large subunit methyltransferase J [Citreicella sp.
SE45]
gi|260421580|gb|EEX14831.1| ribosomal RNA large subunit methyltransferase J [Citreicella sp.
SE45]
Length = 238
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 129/218 (59%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++AK E +R R+AFK+LE+D + FL+PG +V+D G
Sbjct: 23 KTARGRTLSSTRWLQRQLNDPYVKRAKDEGFRGRAAFKILELDERFGFLKPGARVVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAV VNS G +P+G VL VD + P+ GA + + DF + D++
Sbjct: 83 APGGWCQVAVPRVNSLGEKKNKPQGFVLGVDLQEVLPVPGADIY-QLDFLEMGADDKVKE 141
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L + DVV+SDMA +++G ++ DH I L A A + G + K+ G
Sbjct: 142 WL-GGRADVVMSDMAASSSGHKQTDHLRIISLCEAAAELAFDVLEEGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L+ + + + +V +KPPSSR+ S+E F++ GF+G
Sbjct: 201 QGLQSLLKQRFDKVYNVKPPSSRADSSEKFVVATGFRG 238
>gi|339502923|ref|YP_004690343.1| ribosomal RNA large subunit methyltransferase J [Roseobacter
litoralis Och 149]
gi|338756916|gb|AEI93380.1| ribosomal RNA large subunit methyltransferase J [Roseobacter
litoralis Och 149]
Length = 240
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 132/219 (60%), Gaps = 2/219 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+A+K+LE+D + +FL PG +V+D G
Sbjct: 23 KTARGRKLSSTRWLQRQLNDPYVKRARSEGYRGRAAYKILELDDRFRFLVPGARVVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAVK VN+ G + + +G VL VD + PI GA L + DF D D+ V
Sbjct: 83 APGGWCQVAVKRVNALGERTSKAQGSVLGVDLQEMEPIAGA-DLYQLDFMADDA-DQQVR 140
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
K DVV+SDMA +++G ++ DH I L A FA + G + K+ G
Sbjct: 141 AWMGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYFAFDVLEEGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+L++ + + +++V +KPP+SR S+E F++ GF+ +
Sbjct: 201 GELQKLLKQRFTKVSNIKPPASRQDSSEKFVVATGFRAE 239
>gi|381166722|ref|ZP_09875936.1| Ribosomal RNA large subunit (23S) methyltransferase [Phaeospirillum
molischianum DSM 120]
gi|380684295|emb|CCG40748.1| Ribosomal RNA large subunit (23S) methyltransferase [Phaeospirillum
molischianum DSM 120]
Length = 253
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 126/212 (59%), Gaps = 8/212 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK+ YR R+AFK++++D + LRPG++V+D GAAPG W+QV
Sbjct: 41 SSTLWLQRQLNDPYVYEAKRLGYRSRAAFKIIQLDDRFHLLRPGVRVVDLGAAPGGWTQV 100
Query: 79 AVKLVNSHGYDSKQPK-GLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL 137
AV+ V + QPK G V+ +D L PI GA VL + DF D DRL L
Sbjct: 101 AVQRVK-----AGQPKGGTVVGMDILEWDPIAGATVL-QGDFLADDAPDRLKEAL-GGPA 153
Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
DVVLSDMA TG DH I L + FA+ PG + K++ G L + +
Sbjct: 154 DVVLSDMAAPTTGHPSTDHLRIIALVEVALHFAMEVLTPGGAFVAKVFQGGTEKTLLDQL 213
Query: 198 TRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ ++ V+ KPP+SRS SAE +++ GF+G+
Sbjct: 214 KKNFTTVRHAKPPASRSDSAETYVVATGFRGQ 245
>gi|254486645|ref|ZP_05099850.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
GAI101]
gi|214043514|gb|EEB84152.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
GAI101]
Length = 251
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 127/215 (59%), Gaps = 2/215 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV++A E YR R+A+K++E+D K +FL PG +++D GAAPG
Sbjct: 31 RGRKLSSTRWLQRQLNDPYVKRANAEGYRGRAAYKIMELDDKFRFLVPGARIVDLGAAPG 90
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAVK N G + G +L +D + PI G L + DF + D D +V
Sbjct: 91 GWCQVAVKRCNVLGEKQGKNVGTILGIDLQEMEPIAG-CELHQLDFMEDDA-DEIVKGWL 148
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DVV+SDMA +++G ++ DH+ I L A FA + G + K+ G L
Sbjct: 149 GGKADVVMSDMAASSSGHKQTDHNRIIALCEAAAYFAFDVLEDGGTFVAKVLAGGAEGDL 208
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + R +++V +KPP+SR S+E F++ GFKG
Sbjct: 209 QKLLKRRFTKVSNIKPPASRQDSSEKFVVATGFKG 243
>gi|126735777|ref|ZP_01751522.1| ribosomal RNA large subunit methyltransferase, putative
[Roseobacter sp. CCS2]
gi|126714964|gb|EBA11830.1| ribosomal RNA large subunit methyltransferase, putative
[Roseobacter sp. CCS2]
Length = 241
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 130/218 (59%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+A+K+LE+D K +FL PG +++D G
Sbjct: 23 KTARGRKLSSTQWLQRQLNDPYVKRAQTEGYRGRAAYKILELDDKYRFLVPGARIVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAVK N+ G + + +G VL VD + P+ GA + + DF + D ++
Sbjct: 83 APGGWLQVAVKRANTLGERTSKAQGYVLGVDLQEVEPVAGAEIY-QLDFMEDDADLKVKE 141
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L K DVV+SDMA +A+G ++ DH I L A FA + G + K+ G
Sbjct: 142 WL-GGKADVVMSDMAASASGHKQTDHLRIIALCEAAAYFAFDVLEEGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L++ + + +V +KPP+SRS S+E F++ GFKG
Sbjct: 201 GDLQKLLKARFKKVANVKPPASRSDSSEKFVVATGFKG 238
>gi|402591417|gb|EJW85346.1| ribosomal RNA large subunit methyltransferase J [Wuchereria
bancrofti]
Length = 238
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 125/215 (58%), Gaps = 9/215 (4%)
Query: 14 KGKDHSSHL-WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAP 72
KGK ++ L +L +Q++D + +KA++ +YR RSA+KLLEI+ K K ++PG+ V+D GAAP
Sbjct: 23 KGKKSTATLKYLHKQWSDEFSKKAREHSYRARSAYKLLEINEKYKIIKPGMVVVDVGAAP 82
Query: 73 GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL 132
GSW QV +V + YDS L+L +D PI PI G L D T + + IL
Sbjct: 83 GSWCQVVADIVQPNVYDS----ALILGIDLQPILPISGVNFLDLSDITAQKTHENIKQIL 138
Query: 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS----KPGADCLIKIWDGR 188
+DVV+SDMAPN TG +DH+ I L V+ +V S L KIWDG
Sbjct: 139 NGRSVDVVISDMAPNPTGDGGIDHERILSLCATVLELSVRKSVIPLVKNGTFLCKIWDGP 198
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
R + E I R + V +KP +SR HSAE++LL
Sbjct: 199 RREEFIERIKRDFRNVYTVKPKASRDHSAEIYLLA 233
>gi|58040688|ref|YP_192652.1| ribosomal RNA large subunit methyltransferase J [Gluconobacter
oxydans 621H]
gi|81351345|sp|Q5FNQ1.1|RLME_GLUOX RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|58003102|gb|AAW61996.1| Ribosomal RNA large subunit methyltransferase J [Gluconobacter
oxydans 621H]
Length = 268
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 124/214 (57%), Gaps = 12/214 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + WL RQ DPYV A+K+ +R R+AFKL+EID + K + G +++D GAAPG
Sbjct: 56 RGRTTAQQRWLNRQLNDPYVAAARKQGWRSRAAFKLIEIDDRFKLIGEGTRIIDLGAAPG 115
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAVK H V+ +D LP+ P+ GA ++ + DFT P++ DRL +L
Sbjct: 116 GWTQVAVKRGAKH----------VVGLDLLPVDPVAGAEII-EGDFTDPEMPDRLKDML- 163
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMAPN TG DH I LA + FA G + K++ G + +
Sbjct: 164 GGPADLVMSDMAPNTTGHAATDHMRIMGLAEGALDFAFQVLAEGGSFIAKVFQGGSEKDM 223
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +S VK +KPP+SR S+EL+++ GF+
Sbjct: 224 LALMKTAFSSVKHVKPPASRKESSELYVIATGFR 257
>gi|421600322|ref|ZP_16043354.1| 23S rRNA methyltransferase J [Bradyrhizobium sp. CCGE-LA001]
gi|404267569|gb|EJZ32217.1| 23S rRNA methyltransferase J [Bradyrhizobium sp. CCGE-LA001]
Length = 230
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 129/227 (56%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV KAK YR R+AFKLLEID K + L+P
Sbjct: 5 TTGRLHVQVKTGGKRKLSSKLWLERQLNDPYVAKAKAAGYRSRAAFKLLEIDDKFRLLKP 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A K V S + KG V+++D L + I G V ++ DF
Sbjct: 65 GMAVVDLGAAPGGWSQIAAKRVG-----STEGKGKVVAIDLLEMPEIPG-VDFAQLDFMD 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
D ++L +L K DVV+SDMA N TG R+ D I L FA +PG L
Sbjct: 119 NDAPEKLTAML-GGKADVVMSDMAANTTGHRKTDQLRIVGLVETAAAFACDVLEPGGSFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + +L + R ++ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKTFQSGADAELLAQLKRDFATVRHVKPAASRQDSSERYVLATGFRG 224
>gi|288941981|ref|YP_003444221.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Allochromatium vinosum
DSM 180]
gi|288897353|gb|ADC63189.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Allochromatium vinosum
DSM 180]
Length = 206
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 124/212 (58%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL R F DPYV++ + + YR R+A+KLLEI K L+PG++V+D GAAPGSW
Sbjct: 3 RTKSSRRWLDRHFNDPYVKRVQVDGYRSRAAYKLLEIQEKDPILKPGMRVVDLGAAPGSW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+A +LV P+G V+++D LP+ P+ G VVL + DF ++ RL + +
Sbjct: 63 SQIARQLVG--------PEGCVVALDILPMEPLPGVVVL-QGDFRDDEVLSRLREAIGEA 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LDVVLSDMAPN TG +D L + A ++ KPG + K++ G
Sbjct: 114 PLDVVLSDMAPNITGTMVVDQTRAMYLVELALELARSHLKPGGTLVTKVFQGTGFDDYMR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + QV KP SSR+ S E+FL+ +GF+
Sbjct: 174 ELRSSFRQVATRKPKSSRTESREVFLVAKGFR 205
>gi|357031417|ref|ZP_09093360.1| ribosomal RNA large subunit methyltransferase J [Gluconobacter
morbifer G707]
gi|356414647|gb|EHH68291.1| ribosomal RNA large subunit methyltransferase J [Gluconobacter
morbifer G707]
Length = 272
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 124/214 (57%), Gaps = 12/214 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + WL RQ DPYV A+K+ +R R+AFKL+EID + + PG +++D GAAPG
Sbjct: 57 RGRTTAQQRWLNRQLNDPYVAAARKQGWRSRAAFKLIEIDDRFHLIHPGTRIIDLGAAPG 116
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAVK H V +D LP+ P+ GA ++ + DFT P + DRL IL
Sbjct: 117 GWTQVAVKRGAQH----------VAGLDLLPVDPVAGAEII-EGDFTDPAMPDRLKDIL- 164
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMAPN TG DH I LA + FA G + K++ G + ++
Sbjct: 165 GGPADLVMSDMAPNTTGHAATDHMRIMGLAEGALDFAFQVLAEGGGFVAKVFQGGSEKRM 224
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + V+ +KPP+SR S+EL+++ GF+
Sbjct: 225 LDAMKLAFETVRHVKPPASRKESSELYVIATGFR 258
>gi|384918281|ref|ZP_10018363.1| ribosomal RNA large subunit methyltransferase J [Citreicella sp.
357]
gi|384467766|gb|EIE52229.1| ribosomal RNA large subunit methyltransferase J [Citreicella sp.
357]
Length = 254
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 130/215 (60%), Gaps = 2/215 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS +WL+RQ DPYV++A+ + YR R+A+K+LE+D K +FL PG +V+D G APG
Sbjct: 39 RGRKLSSTMWLQRQLNDPYVKRAQTDGYRGRAAYKILELDEKYRFLVPGARVVDLGCAPG 98
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV VN+ G + + +G VL VD + PI GA + + DF + D +++ L
Sbjct: 99 GWCQVAVPRVNALGERAGKAQGYVLGVDLQEVVPIAGAEI-HQLDFMEDDADEKVKEWLG 157
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
VV+SDMA +++G ++ DH I L A FA +PG + K+ G L
Sbjct: 158 GGAT-VVMSDMAASSSGHKQTDHLRIIALCEAAAHFAFDVLEPGGTFVAKVLAGGAEHGL 216
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + + +V +KPP+SRS S+E F++ GF+G
Sbjct: 217 QSLLKQRFEKVAHVKPPASRSDSSEKFVVATGFRG 251
>gi|402850904|ref|ZP_10899089.1| Cell division protein FtsJ [Rhodovulum sp. PH10]
gi|402498762|gb|EJW10489.1| Cell division protein FtsJ [Rhodovulum sp. PH10]
Length = 228
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 129/214 (60%), Gaps = 7/214 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ + LWL+RQ DPYV +AK++ +R R+A+KL+E+D + K ++PG +V+D GAAPG
Sbjct: 17 KGRTLAQKLWLERQLNDPYVAQAKRDGWRSRAAYKLIELDDRFKLMKPGARVVDLGAAPG 76
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA K + + G +G ++++D L + PI G +L DF D+L +L
Sbjct: 77 GWSQVAAKRIGAEG-----GRGRLVAIDLLDMPPIPGVDILH-LDFLDHSAPDKLKALL- 129
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+VLSDMA NATG R+ DH I LA +FA PG L K+ G L
Sbjct: 130 GGPADLVLSDMAANATGHRKTDHLRIMGLAETAAQFAREVLVPGGAFLCKVLRGGTEGDL 189
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ R +++VK +KP +SR+ SAEL++L GF+
Sbjct: 190 LNDLKRDFAKVKHVKPSASRADSAELYVLAMGFR 223
>gi|254510861|ref|ZP_05122928.1| ribosomal RNA large subunit methyltransferase J [Rhodobacteraceae
bacterium KLH11]
gi|221534572|gb|EEE37560.1| ribosomal RNA large subunit methyltransferase J [Rhodobacteraceae
bacterium KLH11]
Length = 238
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 128/218 (58%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+AFK+LE+D K +FL PG +V+D G
Sbjct: 23 KTARGRKLSSTRWLERQLNDPYVKRAQAEGYRGRAAFKILELDEKFRFLVPGARVVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAVK VN+ G S + G VL VD + P+ GA DF + D ++
Sbjct: 83 APGGWLQVAVKRVNALGEKSGKRIGTVLGVDLQEVEPVAGATA-HVLDFMEDDADQKVKD 141
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L K DVV+SDMA ++G ++ DH I L FA + G + K+ G
Sbjct: 142 WL-GGKADVVMSDMAAASSGHKQTDHLRIMALCETAAYFAFDVLEEGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L++ + + + +V +KPP+SRS+S+E F++ GF+G
Sbjct: 201 GDLQKLLKQKFQKVANVKPPASRSNSSEKFVVATGFRG 238
>gi|121602887|ref|YP_988636.1| ribosomal RNA large subunit methyltransferase J [Bartonella
bacilliformis KC583]
gi|421760445|ref|ZP_16197262.1| 23S rRNA methyltransferase J [Bartonella bacilliformis INS]
gi|143459401|sp|A1URN3.1|RLME_BARBK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120615064|gb|ABM45665.1| ribosomal RNA large subunit methyltransferase J [Bartonella
bacilliformis KC583]
gi|411175729|gb|EKS45754.1| 23S rRNA methyltransferase J [Bartonella bacilliformis INS]
Length = 239
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + K L+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKADGYRSRAAYKLIEINERYKILKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +LV S Y+ V+ +D L + P+ G +L + DF D L++ L K D
Sbjct: 94 AARLVESKDYNPS-----VVGIDYLHMEPLPGVAIL-EMDFFHEDAPQELISTL-GSKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L A + F+++ KPG L K + G L ++
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTIALCEAAVHFSISVLKPGGHFLTKTFQGGAEGNLLATLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V +KPP+SR+ S EL+LL FKGK
Sbjct: 207 QNFKKVHHVKPPASRAESVELYLLALQFKGK 237
>gi|188582866|ref|YP_001926311.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium populi
BJ001]
gi|179346364|gb|ACB81776.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium populi
BJ001]
Length = 244
Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 127/216 (58%), Gaps = 10/216 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ S WL+RQ DPYV +AK+E YR R+AFKL+EID + K L+P +++D GAAPG
Sbjct: 29 RGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLIEIDERFKLLKPAQRIVDLGAAPG 88
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA K+V G ++ +D L + P+ GA ++ DF +RL +L
Sbjct: 89 GWSQVAAKIVGESGR--------IVGIDLLDVEPMAGATFIT-LDFLDDSAPERLTELL- 138
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K D+VLSDMA N TG ++ DH LA + FA PG L K++ G QL
Sbjct: 139 GGKADLVLSDMAANTTGHKKTDHLRTIGLAESAAAFAAEILAPGGAFLAKVFQGGTEGQL 198
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ V+ +KP +SR+ S+EL++L GF+G+
Sbjct: 199 LADLKRDFATVRHVKPAASRADSSELYVLATGFRGQ 234
>gi|407770371|ref|ZP_11117741.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thalassospira
xiamenensis M-5 = DSM 17429]
gi|407286649|gb|EKF12135.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thalassospira
xiamenensis M-5 = DSM 17429]
Length = 268
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 124/216 (57%), Gaps = 7/216 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL RQ DPYVQ+AK+ YR R+AFKL+EI+++ LRPG++++D GAAPG
Sbjct: 38 KGRKISSTRWLDRQLNDPYVQEAKRLGYRSRAAFKLIEINNQFDLLRPGMRIVDLGAAPG 97
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAV +V SKQ +G V+ +D L + GA L + DF P D + L
Sbjct: 98 GWTQVAVDMVG-----SKQGRGQVVGLDILEWEGLSGATCL-QADFLDPAAPDMIKQAL- 150
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D +D V+SDM+P TG R+ DH I L + FA PG + K++ G L
Sbjct: 151 DGPVDAVISDMSPETTGHRQTDHIRIIDLVEHALLFAEEVLAPGGIFIAKVFKGGTENDL 210
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + K KPP+SR S E +L+ GF+G+
Sbjct: 211 LNRVKKNFRVSKHAKPPASRPESPEAYLIATGFRGQ 246
>gi|84517387|ref|ZP_01004740.1| ribosomal RNA large subunit methyltransferase J [Loktanella
vestfoldensis SKA53]
gi|84508751|gb|EAQ05215.1| ribosomal RNA large subunit methyltransferase J [Loktanella
vestfoldensis SKA53]
Length = 243
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 130/219 (59%), Gaps = 2/219 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++AK + YR R+A+K+LE+D K +FL PG +++D G
Sbjct: 23 KTARGRKLSSTQWLQRQLNDPYVKRAKADGYRGRAAYKILELDDKYRFLVPGARIVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAVK N+ G + + +G VL +D + PI GA + + DF D ++
Sbjct: 83 APGGWLQVAVKRANALGERTSKAQGYVLGIDLQEVDPIPGAEIY-QLDFMADDADVQVRD 141
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L + DVV+SDMA +A+G ++ DH+ I L A FA G + K+ G
Sbjct: 142 WLGGNA-DVVMSDMAASASGHKQTDHNRIIALCEAAAHFAFDVLNEGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
L++ + + +V +KPP+SRS S+E F++ GFKG+
Sbjct: 201 GDLQKLLKARFEKVANVKPPASRSDSSEKFVVATGFKGR 239
>gi|395792525|ref|ZP_10471952.1| ribosomal RNA large subunit methyltransferase E [Bartonella
vinsonii subsp. arupensis Pm136co]
gi|395432498|gb|EJF98484.1| ribosomal RNA large subunit methyltransferase E [Bartonella
vinsonii subsp. arupensis Pm136co]
Length = 240
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 126/211 (59%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + KFL+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV++V S + ++P V+ +D L + P+ G V+L K DF D +L+ L +K D
Sbjct: 94 AVRVVGS---NDQKPS--VVGIDYLHVNPLPGVVML-KMDFLHADAPQKLIDAL-GEKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L FA++ KPG L K + G L ++
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTVYLCEVAADFALSVLKPGGHFLAKAFQGGAENTLLTTLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SRS S EL+LL FKGK
Sbjct: 207 QNFKTVHHVKPPASRSESVELYLLALRFKGK 237
>gi|381160479|ref|ZP_09869711.1| 23S rRNA methylase [Thiorhodovibrio sp. 970]
gi|380878543|gb|EIC20635.1| 23S rRNA methylase [Thiorhodovibrio sp. 970]
Length = 215
Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 126/212 (59%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+RQ DPYV++A+ E YR R+A+K LEID+K + LRPG++VLD GAAPG W
Sbjct: 4 RSKSSQRWLERQRRDPYVKQAQSEGYRSRAAYKFLEIDAKDRLLRPGMRVLDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV V S +G V+++D LP+ P+ G VV + DFT+ + +R+ L +
Sbjct: 64 SQVLAAGVGS--------RGQVIALDLLPMDPVPG-VVFIQGDFTEDEPLERIHAALNGE 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GMR +D L + A + G +IK + G QL
Sbjct: 115 FVDLVLSDMAPNISGMRAVDQPRSVHLCELALDLATRVLQSGGHLVIKAFHGEGFDQLVR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ R + +V KP +SR++S E +L+ GF+
Sbjct: 175 ELRRCFERVVTRKPDASRANSRETYLVATGFR 206
>gi|402772259|ref|YP_006591796.1| ribosomal RNA large subunit methyltransferase E, 23S rRNA Um2552
methyltransferase, rRNA
(uridine-2\'-O-)-methyltransferase [Methylocystis sp.
SC2]
gi|401774279|emb|CCJ07145.1| Ribosomal RNA large subunit methyltransferase E, 23S rRNA Um2552
methyltransferase, rRNA
(uridine-2\'-O-)-methyltransferase [Methylocystis sp.
SC2]
Length = 232
Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 124/211 (58%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK+E YR R+A+KL+E+D + +PG +++D GAAPG WSQV
Sbjct: 26 SSTLWLERQLNDPYVARAKREGYRSRAAYKLIEMDDRYHLFKPGDRIVDLGAAPGGWSQV 85
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A V +K+ KG V++VD L + +DG V + DF PD + + +L D
Sbjct: 86 AAAHVK-----AKEGKGKVVAVDLLDMEAVDG-VEFAVKDFNDPDAPEFIKNML-GGAAD 138
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
V+SDMA NATG + DH I LA FA G + K+ G QL +
Sbjct: 139 GVISDMAANATGHKATDHLRIVALAELAADFACDVLAEGGFFIAKVLQGGTEGQLLTRLK 198
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R +S V+ +KP +SR+ SAEL++L GF+G+
Sbjct: 199 RDFSTVRHVKPAASRAGSAELYVLATGFRGR 229
>gi|300022350|ref|YP_003754961.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hyphomicrobium
denitrificans ATCC 51888]
gi|299524171|gb|ADJ22640.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hyphomicrobium
denitrificans ATCC 51888]
Length = 242
Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 127/210 (60%), Gaps = 6/210 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV +K+E R R+A+KL EID++ FL+PG +V+D GAAPG WSQV
Sbjct: 35 SSARWLERQLNDPYVAASKREGLRSRAAYKLREIDARYNFLKPGQRVIDLGAAPGGWSQV 94
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + V S G KG V+++D L PI G ++ + DFT P+ +D L + L+ K D
Sbjct: 95 AAESVKSVG-----GKGQVVAIDYLSFEPIPGVDII-EMDFTDPNAEDLLKSRLRGGKAD 148
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA G + DH I LA A FA +PG L K++ G L + +
Sbjct: 149 VVLSDMAAPTVGHAKTDHLRIMGLAEAAAAFAADVLEPGGVFLCKVFQGGTERDLLDMLK 208
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R + V+ +KPP+SR S+EL++L GF+G
Sbjct: 209 RDFKVVRHVKPPASRQESSELYVLATGFRG 238
>gi|163797468|ref|ZP_02191419.1| 23S rRNA methylase [alpha proteobacterium BAL199]
gi|159177217|gb|EDP61776.1| 23S rRNA methylase [alpha proteobacterium BAL199]
Length = 251
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 127/216 (58%), Gaps = 8/216 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DP+V ++K+ YR R+AFKL++++ + FLRPG +V+D GAAPG
Sbjct: 40 RGRTASSQRWLERQLNDPFVAESKRLGYRSRAAFKLIQLNERFNFLRPGARVVDLGAAPG 99
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+Q++V V + G +GLV+ +D LP+ PI GA ++ + DF D + +
Sbjct: 100 GWTQISVDRVGAPG------RGLVVGLDILPVEPIAGATLI-EADFMADDAPQQ-IKAAT 151
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+DVVLSDMA TG + DH I L A FA+ P + K++ G + +
Sbjct: 152 GGLVDVVLSDMAAQTTGHPQTDHLRIVGLCEAAFEFALEVLAPEGTFVAKVFQGGSETAM 211
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R + V+ KPP+SR+ SAE +++ GF+G+
Sbjct: 212 LARMKRAFKAVRHAKPPASRAESAETYVVATGFRGE 247
>gi|347759014|ref|YP_004866576.1| ftsJ-like methyltransferase family protein [Micavibrio
aeruginosavorus ARL-13]
gi|347591532|gb|AEP10574.1| ftsJ-like methyltransferase family protein [Micavibrio
aeruginosavorus ARL-13]
Length = 210
Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 123/210 (58%), Gaps = 13/210 (6%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV +A+K +R R+AFKL+E+D ++ +RPG+ ++D GAAPG WSQV
Sbjct: 11 SSRRWLQRQLNDPYVLEAQKAGFRSRAAFKLIEMDEQLHLIRPGMNIIDLGAAPGGWSQV 70
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +H V+ +D LPI P+ G L + DF D + L+T L D D
Sbjct: 71 AAA-KGAH----------VVGLDLLPIDPLPGIAFL-QMDFMNDDAPEALITTL-DGPAD 117
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN TG + DH I L A FA+ +PG + K++ G + +L +
Sbjct: 118 LVMSDMAPNTTGHQSTDHIRIMGLVEAAYDFALEVLRPGGSFVAKVFQGGTQAELLARMK 177
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R + VK +KP +SR SAE +++ GFKG
Sbjct: 178 RDFKSVKHIKPKASRKESAEQYVVATGFKG 207
>gi|126737830|ref|ZP_01753560.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
SK209-2-6]
gi|126721223|gb|EBA17927.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
SK209-2-6]
Length = 238
Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 131/218 (60%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+A+K++E+D K +FL PG +V+D G
Sbjct: 23 KTARGRKLSSTRWLQRQLNDPYVRRAQAEGYRGRAAYKIMELDDKFRFLVPGARVVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG WSQVAVK +N+ G S + G +L VD I P+ GA + DF +++ T
Sbjct: 83 APGGWSQVAVKRINALGERSGKAIGTILGVDLQEIEPLAGA-EFHQLDFMDEGADEQVKT 141
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L + DVV+SDMA ++G ++ DH I L F+ + G + K+ G
Sbjct: 142 WLGGNA-DVVMSDMAAASSGHKQTDHLRIMSLCETAAYFSFDVLEEGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+L++ + + +++V +KPP+SRS S+E F++ GF+G
Sbjct: 201 GELQKLLKQKFTKVANVKPPASRSDSSEKFVVAMGFRG 238
>gi|46203098|ref|ZP_00208794.1| COG0293: 23S rRNA methylase [Magnetospirillum magnetotacticum MS-1]
Length = 251
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 127/216 (58%), Gaps = 10/216 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ S WL+RQ DPYV +AK+E YR R+AFKL+EID + K L+PG +++D GAAPG
Sbjct: 36 RGRTLSQKRWLERQLNDPYVARAKREGYRSRAAFKLIEIDERFKLLKPGQRIVDLGAAPG 95
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA K+V + G ++ +D L I P+ GA ++ DF RL +L
Sbjct: 96 GWSQVAAKIVGEN--------GCIVGIDLLEIEPMAGATFIT-LDFLDESAPARLHELL- 145
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K D+VLSDMA N TG ++ DH LA FA PG L K++ G +L
Sbjct: 146 GGKADLVLSDMAANTTGHKKTDHLRTIGLAETAAAFAAEILAPGGAFLAKVFQGGTEGEL 205
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ V+ +KP +SR+ S+EL++L GF+G+
Sbjct: 206 LADLKRDFAVVRHVKPAASRADSSELYVLATGFRGR 241
>gi|89095222|ref|ZP_01168145.1| cell division protein FtsJ [Neptuniibacter caesariensis]
gi|89080519|gb|EAR59768.1| cell division protein FtsJ [Oceanospirillum sp. MED92]
Length = 206
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 126/213 (59%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS WLK F D YV+K+K+ YR R++FKL+E+D K K +PG+ V+D GAAPG W
Sbjct: 3 KSTSSERWLKEHFDDHYVKKSKELGYRSRASFKLIELDEKDKLFQPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+A + V HG V++ D LP+ + G V + DFT+ ++ +R++ L D+
Sbjct: 63 SQIAAERVGDHGR--------VVASDILPMDSMAG-VEFVQGDFTEEEVLNRILKALGDE 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+V+SDMAPN +GM +D L + A KPG + + K++ G Q +
Sbjct: 114 PADLVISDMAPNMSGMSAVDQPAAMYLVELALDMAREVLKPGGNFVAKVFQGEGFDQYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ +++V KP SSR+ S E++LLG+GFKG
Sbjct: 174 DMRTSFNKVVTRKPDSSRARSREVYLLGKGFKG 206
>gi|110632831|ref|YP_673039.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Chelativorans sp. BNC1]
gi|123162804|sp|Q11L51.1|RLME_MESSB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|110283815|gb|ABG61874.1| 23S rRNA Um-2552 2'-O-methyltransferase [Chelativorans sp. BNC1]
Length = 235
Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 122/216 (56%), Gaps = 7/216 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G SS WL+R DPYV++A E R R+A+KL+EID K L PG+KV+D GAAPG
Sbjct: 22 RGLKSSSRRWLERHLNDPYVRRANSEGMRSRAAYKLIEIDDKHHILAPGMKVIDLGAAPG 81
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVA V S D +P V+ +D L + P+ GA VL + DF DRL+ +L
Sbjct: 82 GWCQVAAASVKS---DPAKPS--VVGIDYLEMDPVPGAAVL-QMDFLDDAAPDRLIEVLG 135
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DVVLSDMA TG R DH QL A FA++ K G + L K + G +L
Sbjct: 136 GSP-DVVLSDMAAPTTGHRRTDHLRTMQLCEAAADFAISVLKTGGNFLAKTFQGGTEGEL 194
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R + V +KPP+SR S EL++L + FKG+
Sbjct: 195 LSLLKRNFRSVHHVKPPASRDESVELYILAKDFKGR 230
>gi|254453503|ref|ZP_05066940.1| ribosomal RNA large subunit methyltransferase J [Octadecabacter
arcticus 238]
gi|198267909|gb|EDY92179.1| ribosomal RNA large subunit methyltransferase J [Octadecabacter
arcticus 238]
Length = 244
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 128/218 (58%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS LWL+RQ DPYV +AK + YR R+A+K+LE++ K F PG +V+D GA
Sbjct: 26 KTARGRRMSSTLWLQRQLNDPYVVRAKADGYRGRAAYKILELNEKFDFFTPGKRVVDLGA 85
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W Q+AV VN+ G +P G +L +D + PI G+ L DF + D ++
Sbjct: 86 APGGWIQIAVPKVNALGERKGKPIGTILGIDLQEMEPIAGS-ELHVLDFMEDDADQKVKE 144
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L K D+VLSDMA +A+G ++ DH+ I L A FA + G + K+ G
Sbjct: 145 WL-GGKADIVLSDMAASASGHKQTDHNRIMALCEAAAYFAFDVLEEGGVFVAKVLAGGAE 203
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L+ + + +V+ +KPP+SRS S+E F++ GF+G
Sbjct: 204 ADLQRLLKVNFKKVQYVKPPASRSDSSEKFVVATGFRG 241
>gi|418055908|ref|ZP_12693962.1| Ribosomal RNA large subunit methyltransferase E [Hyphomicrobium
denitrificans 1NES1]
gi|353210186|gb|EHB75588.1| Ribosomal RNA large subunit methyltransferase E [Hyphomicrobium
denitrificans 1NES1]
Length = 243
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 128/210 (60%), Gaps = 6/210 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV +K+E R R+A+KL EID++ FL+PG +V+D GAAPG WSQV
Sbjct: 36 SSARWLERQLNDPYVAASKREGLRSRAAYKLREIDARYNFLKPGQRVIDLGAAPGGWSQV 95
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + V + G KG V+++D L PI G ++ + DFT P +D L + L+ + D
Sbjct: 96 AAEHVKATG-----GKGQVVAIDYLNFEPIPGVEII-EMDFTDPKAEDLLKSRLRGGRAD 149
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA G + DH I LA A FA +PG L K++ G L +++
Sbjct: 150 VVLSDMAAPTVGHAKTDHLRIMGLAEAAAAFAADVLEPGGVFLCKVFQGGTERDLLDALK 209
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R + V+ +KPP+SR+ S+EL++L GF+G
Sbjct: 210 RDFKVVRHVKPPASRAESSELYVLATGFRG 239
>gi|304321737|ref|YP_003855380.1| 23S rRNA methylase [Parvularcula bermudensis HTCC2503]
gi|303300639|gb|ADM10238.1| 23S rRNA methylase [Parvularcula bermudensis HTCC2503]
Length = 244
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 123/214 (57%), Gaps = 10/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS LWL+RQ DPYV +A+ E +R R+A+KLLE+D K LRPG +V+D GAAPG
Sbjct: 34 RGRKISSKLWLERQLNDPYVARARAEGFRSRAAYKLLELDEKFGLLRPGARVVDLGAAPG 93
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA + V P G V+ +D L + P+DG V L K DF D RL +L
Sbjct: 94 GWSQVAGRAV--------LPGGQVVGIDYLDMPPLDG-VTLLKADFLDEDTPGRLRAVL- 143
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+VLSDMA TG + DH I LA A + FA T PG + K+ G + L
Sbjct: 144 GGPAHLVLSDMAAPTTGHKSTDHLRIVALAEAALDFAETVLAPGGGYVAKVLQGGSEKSL 203
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + ++ V KP +SR+ SAE++++ G++
Sbjct: 204 LDRLKADFTDVAHAKPSASRAESAEMYVVATGYR 237
>gi|163746305|ref|ZP_02153663.1| ribosomal RNA large subunit methyltransferase J [Oceanibulbus
indolifex HEL-45]
gi|161380190|gb|EDQ04601.1| ribosomal RNA large subunit methyltransferase J [Oceanibulbus
indolifex HEL-45]
Length = 241
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 129/215 (60%), Gaps = 2/215 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV++A+ E YR R+A+K++E+D K +FL PG +++D GAAPG
Sbjct: 26 RGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMELDDKFRFLVPGARIVDLGAAPG 85
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAVK N G S + G +L VD + PI G L + DF + D ++ L
Sbjct: 86 GWCQVAVKRCNVLGERSGKQVGTILGVDLQEMEPIAG-CELHQLDFMEDDADLKVKEWL- 143
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DVV+SDMA +A+G ++ DH I L A FA + G + K+ G +L
Sbjct: 144 GGKADVVMSDMAASASGHKQTDHLRIIALCEAAAYFAFDVLEDGGTFVAKVLAGGAEGEL 203
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + +++V +KPP+SR+ S+E F++ GFKG
Sbjct: 204 QKLLKMRFTKVANIKPPASRADSSEKFVVATGFKG 238
>gi|86138870|ref|ZP_01057442.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
MED193]
gi|85824517|gb|EAQ44720.1| ribosomal RNA large subunit methyltransferase J [Roseobacter sp.
MED193]
Length = 243
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 128/215 (59%), Gaps = 2/215 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV++A+ E YR R+A+K++E+D K +FL PG +V+D G APG
Sbjct: 31 RGRRLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDKYRFLVPGARVVDLGCAPG 90
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAVK +N G + +G ++ VD I P+ GA DF D++ L
Sbjct: 91 GWAQVAVKRINVMGEKRGKAQGRIIGVDLQEIEPLAGA-EFHTLDFMDEGADDQVKEWL- 148
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DVV+SDMA +++G ++ DH I L A FA + G + K+ G +L
Sbjct: 149 GGKADVVMSDMAASSSGHKQTDHLKIIALCEAAAYFAFDVLEEGGTFVAKVLAGGAEGEL 208
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + +++V +KPPSSRS S+E F++ G+KG
Sbjct: 209 QKLLKNKFTKVANVKPPSSRSDSSEKFVVAMGYKG 243
>gi|256080076|ref|XP_002576309.1| cell division protein ftsj [Schistosoma mansoni]
Length = 244
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 136/230 (59%), Gaps = 25/230 (10%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIK--FLRPGLKVLDCGAAPGSWSQVAV 80
W+ RQ +DPYV++A E+YRCRSAFKLL+++ KI +PG V+DCGAAPGSW QVA
Sbjct: 7 WIARQRSDPYVKRAHLESYRCRSAFKLLQLNDKISGGIFKPGDIVVDCGAAPGSWCQVAS 66
Query: 81 KLVNSHGYDSK-------QPKGLVLSVDKLPIYPIDGAVV--------LSKC-DFTQPDI 124
L N + ++ Q KGLV++ D L P+ G + S+C + I
Sbjct: 67 SLTNCNNNNNNNLKASNNQNKGLVIAFDLLNFAPLPGVITHCGVDLNNWSECINLINQSI 126
Query: 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184
+D +DVVLSD+APN GMRE+D + +LA ++R A++ SK GA +IK+
Sbjct: 127 SSHFNNNNNNDGVDVVLSDIAPNVAGMREIDIPAMMKLAYNILRVAISVSKEGATFVIKL 186
Query: 185 WDGRNRPQLEESITRFY-------SQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + ++++++FY S + +KP +SR S+E++L+ RGF+
Sbjct: 187 FQSQEAEEFKQTVSQFYTLNSKCPSFTRFIKPEASRKESSEIYLVARGFQ 236
>gi|294677155|ref|YP_003577770.1| ribosomal RNA large subunit methyltransferase J [Rhodobacter
capsulatus SB 1003]
gi|294475975|gb|ADE85363.1| ribosomal RNA large subunit methyltransferase J [Rhodobacter
capsulatus SB 1003]
Length = 259
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 126/219 (57%), Gaps = 2/219 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ KG+ SS LWL+RQ DPYV +AKKE YR R+A+K++E+D K +FL PG +V+D G
Sbjct: 31 KTAKGRKLSSTLWLERQLNDPYVVRAKKEGYRGRAAYKIMELDDKFRFLVPGARVVDLGC 90
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAV VN+ G + G VL VD I I GA L + DF + D++
Sbjct: 91 APGGWCQVAVARVNALGEKGGKKVGTVLGVDLQEIAAIAGA-ELHQLDFLEDGADDKVKA 149
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L + DVV+SDMA A+G +++DH I L FA + G + K+ G
Sbjct: 150 WL-GGRADVVMSDMAAAASGNQQVDHLRIITLCEHAAYFAFDVLELGGTFVAKVLAGGAE 208
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
L + + + +V +KPPSSR S+E F++ GF+GK
Sbjct: 209 QGLMTVLKKNFEKVVNMKPPSSRKDSSEKFVVATGFRGK 247
>gi|84687207|ref|ZP_01015088.1| ribosomal RNA large subunit methyltransferase J [Maritimibacter
alkaliphilus HTCC2654]
gi|84664795|gb|EAQ11278.1| ribosomal RNA large subunit methyltransferase J [Maritimibacter
alkaliphilus HTCC2654]
Length = 238
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 127/215 (59%), Gaps = 2/215 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV++A+ E YR R+AFK+LEID K +FL PG +V+D G APG
Sbjct: 26 RGRKLSSTRWLERQLNDPYVKRARDEGYRGRAAFKILEIDEKFRFLVPGARVVDLGCAPG 85
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV+ VN+ G G VL VD + P+ GA + DF + D +++ L
Sbjct: 86 GWLQVAVERVNALGEKKGTKVGTVLGVDLQEVEPVAGAEAY-QLDFMEDDADEKVKEWL- 143
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DVV+SDMA ++G ++ DH I L FA + G + K+ G L
Sbjct: 144 GGKADVVMSDMAAASSGHKQTDHLRIIALCETAAYFAFDVLEEGGTFVAKVLAGGAEGDL 203
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + + +++V +KPP+SRS S+E F++ GF+G
Sbjct: 204 QKLLKQKFTKVVNIKPPASRSDSSEKFVVATGFRG 238
>gi|260433766|ref|ZP_05787737.1| ribosomal RNA large subunit methyltransferase J [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417594|gb|EEX10853.1| ribosomal RNA large subunit methyltransferase J [Silicibacter
lacuscaerulensis ITI-1157]
Length = 238
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 128/218 (58%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+A+K+LE+D K +FL PG +V+D G
Sbjct: 23 KTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKILELDDKYRFLVPGARVVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAVK VN+ G S + G VL +D + PI GA + + DF + D D V
Sbjct: 83 APGGWCQVAVKRVNALGEKSGKKVGTVLGIDLQEVEPIAGAEI-HQLDFME-DGADEKVK 140
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
K DVV+SDMA ++G ++ DH I L FA + G + K+ G
Sbjct: 141 EWLGGKADVVMSDMAAASSGHKQTDHLRIIALCETAAYFAFDVLEKGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L++ + + + +V +KPP+SRS S+E F++ GF+G
Sbjct: 201 GDLQKLLKQKFEKVANVKPPASRSDSSEKFVVATGFRG 238
>gi|424744751|ref|ZP_18173035.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-141]
gi|422942651|gb|EKU37697.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-141]
Length = 216
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 126/209 (60%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D LP+ + L + DF + D+ ++L+ IL ++D
Sbjct: 73 AGKLVGS--------KGLVIASDILPMDALPDVTFL-QGDFREEDVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQLVVKVFQGAGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K +KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTVKPAASRARSKEVFLVGQGRK 212
>gi|328544053|ref|YP_004304162.1| ribosomal RNA large subunit methyltransferase J [Polymorphum gilvum
SL003B-26A1]
gi|326413797|gb|ADZ70860.1| Ribosomal RNA large subunit methyltransferase J [Polymorphum gilvum
SL003B-26A1]
Length = 240
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 128/222 (57%), Gaps = 7/222 (3%)
Query: 8 KLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLD 67
++K K K+ SS WL+RQ DPYV++AK E YR R+A+KL+EID K + L+PG +V+D
Sbjct: 16 RVKTAAKRKE-SSTRWLERQLNDPYVRRAKMEGYRSRAAYKLIEIDDKHRLLKPGQRVVD 74
Query: 68 CGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDR 127
GAAPG W QVAV+ V G + P LV+ +D L + I G V L K DF D
Sbjct: 75 LGAAPGGWCQVAVERV---GSTPENP--LVVGIDYLDMDHIPGVVFLRK-DFLDDDAPAA 128
Query: 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187
L+ L + DVVLSDMA TG R+ DH T L I FA PG L K++ G
Sbjct: 129 LMAALGGHRPDVVLSDMAAPTTGHRQTDHLRTTHLFEVAILFARENLAPGGSFLAKVFRG 188
Query: 188 RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
L + R + V +KPP+SR S EL+++ +GF+G+
Sbjct: 189 GTENALLADLKRDFETVVHVKPPASRKESPELYVVAKGFRGQ 230
>gi|39935266|ref|NP_947542.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris CGA009]
gi|81562937|sp|Q6N7Q9.1|RLME_RHOPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|39649118|emb|CAE27638.1| cell division protein FtsJ [Rhodopseudomonas palustris CGA009]
Length = 237
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 120/210 (57%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ YR R+A+KL EID K + L+ G+ V+D GAAPG WSQV
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKSGMAVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + +G V+++D L + + G V ++ DF P +RL +L D
Sbjct: 82 AAKKVGAA-----DGRGKVVAIDLLEMGEVPG-VTFAQLDFLDPSAPERLREMLGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N TG R+ D I L FA KPG L K++ L +
Sbjct: 135 IVMSDMAANTTGHRKTDQLRIVGLVETAAMFASEVLKPGGTFLAKVFQSGADASLMTELK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R Y+ VK +KP +SR S+E +LL GF+G
Sbjct: 195 RDYASVKHVKPAASRKDSSERYLLATGFRG 224
>gi|192290875|ref|YP_001991480.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris TIE-1]
gi|226705305|sp|B3QFD2.1|RLME_RHOPT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|192284624|gb|ACF01005.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris TIE-1]
Length = 237
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 120/210 (57%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ YR R+A+KL EID K + L+ G+ V+D GAAPG WSQV
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKSGMAVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + +G V+++D L + + G V ++ DF P +RL +L D
Sbjct: 82 AAKKVGAA-----DGRGKVVAIDLLEMGEVPG-VTFAQLDFLDPSAPERLREMLGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N TG R+ D I L FA KPG L K++ L +
Sbjct: 135 IVMSDMAANTTGHRKTDQLRIVGLVETAAMFASEVLKPGGTFLAKVFQSGADASLMTELK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R Y+ VK +KP +SR S+E +LL GF+G
Sbjct: 195 RDYASVKHVKPAASRKDSSERYLLATGFRG 224
>gi|262278061|ref|ZP_06055846.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
calcoaceticus RUH2202]
gi|262258412|gb|EEY77145.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
calcoaceticus RUH2202]
Length = 216
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 126/209 (60%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS +W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRVWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D LP+ + L + DF + D+ ++L+ IL ++D
Sbjct: 73 AGKLVGS--------KGLVVASDILPMDALPDVTFL-QGDFREEDVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGTGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLIGQGRK 212
>gi|115525274|ref|YP_782185.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris BisA53]
gi|122295646|sp|Q07LH9.1|RLME_RHOP5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|115519221|gb|ABJ07205.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris BisA53]
Length = 235
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 125/210 (59%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ YR R+A+KLLEID K FL+PG V+D GAAPG WSQ+
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLLEIDDKHHFLKPGASVVDLGAAPGGWSQI 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + + KG V+++D L + I G V ++ DF P ++L+ ++ ++D
Sbjct: 82 AAKRVG-----ATEGKGKVVAIDLLEMPEIVG-VTFAQLDFLSPAAPEKLLAMI-GGRVD 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG R+ D I L FA KPG + K++ L +
Sbjct: 135 VVMSDMAANTTGHRKTDQLRIVGLVEDAAAFACDVLKPGGTFVAKVFQSGADATLMTQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ VK LKP +SR S+E ++L GF+G
Sbjct: 195 RDFASVKHLKPQASRKDSSERYVLALGFRG 224
>gi|407776100|ref|ZP_11123390.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thalassospira
profundimaris WP0211]
gi|407280959|gb|EKF06525.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thalassospira
profundimaris WP0211]
Length = 268
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 125/216 (57%), Gaps = 7/216 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL RQ DPYVQ+AK+ YR R+AFKL+EI+++ L+PG++++D GAAPG
Sbjct: 38 KGRKISSTRWLDRQLNDPYVQEAKRLGYRSRAAFKLIEINNQFDLLQPGMRIVDLGAAPG 97
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAV +V SK KG V+ +D L I GA L + DF P D + L+
Sbjct: 98 GWTQVAVDMVG-----SKHGKGQVVGLDILEWEGISGATCL-QADFLDPKAPDMIKHELQ 151
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+D V+SDM+P TG R+ DH I L + FA PG + K++ G +L
Sbjct: 152 -GAVDAVISDMSPETTGHRQTDHIRIIDLVEHALLFAEEVLAPGGIFIAKVFKGGTENEL 210
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + + K KPP+SR S E +L+ GF+G+
Sbjct: 211 LDRVKKNFRVTKHAKPPASRPESPEAYLIATGFRGQ 246
>gi|346992751|ref|ZP_08860823.1| ribosomal RNA large subunit methyltransferase E [Ruegeria sp. TW15]
Length = 238
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 128/218 (58%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+AFK+LE+D K +FL PG +V+D G
Sbjct: 23 KTARGRKLSSTRWLERQLNDPYVKRAQAEGYRGRAAFKILELDDKFRFLVPGARVVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAV+ VN+ G S + G VL VD + P+ GA DF + D ++
Sbjct: 83 APGGWLQVAVQRVNALGEKSGKRIGTVLGVDLQEVEPVAGATA-HVLDFMEDDADQKVKD 141
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L K DVV+SDMA ++G ++ DH I L FA + G + K+ G
Sbjct: 142 WL-GGKADVVMSDMAAASSGHKQTDHLRIMALCETAAYFAFDVLEEGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L++ + + +++V +KPP+SRS S+E F++ GF+G
Sbjct: 201 GDLQKLLKQKFNKVANVKPPASRSDSSEKFVVATGFRG 238
>gi|254438214|ref|ZP_05051708.1| ribosomal RNA large subunit methyltransferase J [Octadecabacter
antarcticus 307]
gi|198253660|gb|EDY77974.1| ribosomal RNA large subunit methyltransferase J [Octadecabacter
antarcticus 307]
Length = 244
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 127/215 (59%), Gaps = 2/215 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS LWL+RQ DPYV +AK + YR R+A+K+LE++ K F PG +V+D GAAPG
Sbjct: 29 RGRKMSSTLWLQRQLNDPYVVRAKADGYRGRAAYKILELNDKFDFFTPGKRVVDLGAAPG 88
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W Q+AV VN+ G +P G +L +D + PI G+ L DF + D ++ L
Sbjct: 89 GWIQIAVPKVNALGERKGKPIGTILGIDLQEMEPIAGS-ELHVLDFMEDDADQKVKDWL- 146
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K D+VLSDMA +A+G ++ DH+ I L A FA + G + K+ G L
Sbjct: 147 GGKADIVLSDMAASASGHKQTDHNRIMALCEAAAYFAFDVLEEGGVFVAKVLAGGAEADL 206
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + +V+ +KPP+SRS S+E F++ GF+G
Sbjct: 207 QRLLKINFKKVQYVKPPASRSDSSEKFVVATGFRG 241
>gi|414162942|ref|ZP_11419189.1| ribosomal RNA large subunit methyltransferase E [Afipia felis ATCC
53690]
gi|410880722|gb|EKS28562.1| ribosomal RNA large subunit methyltransferase E [Afipia felis ATCC
53690]
Length = 228
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 122/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK+E YR R+AFKLLE+D K +FL+ G V+D GAAPG WSQ+
Sbjct: 22 SSKLWLERQLNDPYVAQAKREGYRSRAAFKLLEMDDKYRFLKQGQAVVDLGAAPGGWSQI 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + KG V+++D L + I G V ++ DF D ++L +L D
Sbjct: 82 AAKRVGAEA-----GKGKVIAIDLLEMGEIPG-VAFAQLDFLADDAPEKLRAMLGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N TG R+ D I L + FA PG L K++ L+ +
Sbjct: 135 IVMSDMAANTTGHRKTDQLRIVGLVESAAAFAAEVLNPGGVFLAKVFQSGADATLQAELK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ V+ +KP +SR S+E ++L GF+G
Sbjct: 195 RNFATVRHVKPAASRQDSSERYVLAIGFRG 224
>gi|70734330|ref|YP_257970.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
protegens Pf-5]
gi|83305665|sp|Q4KIG3.1|RLME_PSEF5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|68348629|gb|AAY96235.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
protegens Pf-5]
Length = 209
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 127/214 (59%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F DP+V+ A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSHNWLKEHFNDPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIKI+ G + +
Sbjct: 114 EVDLVISDMAPNMSGLAAVDMPRAMFLCELALDLAGRVLRPGGDFLIKIFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
S+ + + +V++ KP SSR S E +LLGRGF+G+
Sbjct: 174 SVRQMFEKVQMRKPSSSRDRSREQYLLGRGFRGR 207
>gi|299769010|ref|YP_003731036.1| FtsJ-like methyltransferase family protein [Acinetobacter
oleivorans DR1]
gi|298699098|gb|ADI89663.1| FtsJ-like methyltransferase family protein [Acinetobacter
oleivorans DR1]
Length = 216
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 126/209 (60%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D LP+ + L + DF + D+ ++L+ IL ++D
Sbjct: 73 AGKLVGS--------KGLVIASDILPMDALPDVSFL-QGDFREEDVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQLVVKVFQGAGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K +KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTVKPAASRARSKEVFLVGQGRK 212
>gi|312114414|ref|YP_004012010.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodomicrobium vannielii
ATCC 17100]
gi|311219543|gb|ADP70911.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodomicrobium vannielii
ATCC 17100]
Length = 240
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 128/222 (57%), Gaps = 7/222 (3%)
Query: 8 KLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLD 67
KLK+ +G+ S WL+RQ DPYV AK++ YR R+A+KL EI K L+PG V+D
Sbjct: 15 KLKKT-RGRTASQRQWLERQLNDPYVAAAKRDGYRSRAAYKLEEIAEKYGLLKPGDIVVD 73
Query: 68 CGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDR 127
GAAPG WSQVA V + +G V+++D L I G +L + DFT P R
Sbjct: 74 LGAAPGGWSQVAANRVKA-----ADGRGAVVALDYLDFDAIPGVTILQQ-DFTDPVADGR 127
Query: 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187
L+ +L + + VLSDMA TG R+ DH I LA + FAV PG L K++ G
Sbjct: 128 LLDMLAGRRPNAVLSDMAAPTTGHRQTDHLRIMGLAEEALAFAVRVMAPGGFFLSKVFQG 187
Query: 188 RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ L + + R ++ V+ +KP +SR+ S EL++L GF+GK
Sbjct: 188 GSEKSLLDVLKRDFATVRHIKPKASRAESPELYVLATGFRGK 229
>gi|146340136|ref|YP_001205184.1| ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. ORS 278]
gi|158514219|sp|A4YSS3.1|RLME_BRASO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|146192942|emb|CAL76949.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. ORS 278]
Length = 231
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 130/227 (57%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV +AK++ YR R+ +KL+EID K L+P
Sbjct: 5 TTGRMHVQVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGYRSRATYKLIEIDDKYHMLKP 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A + V ++ KG V+++D L + I G V ++ DF
Sbjct: 65 GMTVVDLGAAPGGWSQIAARRVG-----AEAGKGKVVAIDLLEMGEIPG-VTFAQLDFHA 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
D ++L T++ + DVV+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 QDAPEKLRTMI-GGRADVVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + +L + R Y+ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKTFQSGADAELLAQLKRDYATVRHVKPAASRQDSSERYVLAMGFRG 224
>gi|444920820|ref|ZP_21240659.1| Ribosomal RNA large subunit methyltransferase E [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444508040|gb|ELV08213.1| Ribosomal RNA large subunit methyltransferase E [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 211
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 125/211 (59%), Gaps = 9/211 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK D YV +A+KEN+R R+ +KL E+D K + +PG+ ++D GAAPGSWSQ
Sbjct: 8 SSSRWLKEHHDDEYVLRARKENWRSRAIYKLSEMDEKDRLFKPGMTIVDLGAAPGSWSQY 67
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A+ V +G V ++D LP+ P+ G +++ DF + + L +L K+D
Sbjct: 68 AMHKVGHNGK--------VFALDILPMNPVAGVDIIT-GDFREESVLHELEALLDGRKID 118
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +GM+ +D + L F+ + KPG D L+KI+ G + + +
Sbjct: 119 VVISDMAPNTSGMKGVDQPRMMYLLDLAFDFSYHHLKPGGDFLMKIFQGEGFEEYLKQLR 178
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +V KP +SR+ S+E++LL RGFKG+
Sbjct: 179 ENFDKVLTRKPKASRARSSEIYLLARGFKGR 209
>gi|452963162|gb|EME68244.1| 23S rRNA methylase [Magnetospirillum sp. SO-1]
Length = 256
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 122/210 (58%), Gaps = 5/210 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK+ YR R+AFK++++D + L+PGL+V+D GAAPG W+QV
Sbjct: 42 SSTLWLQRQLNDPYVHEAKRLGYRSRAAFKMIQLDERFHILKPGLRVVDLGAAPGGWTQV 101
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ V G Q G V+ +D L P+ GA+ L + DF D DRL L D
Sbjct: 102 AVEKV---GALKPQGGGKVVGIDILEWDPLPGAITL-QGDFLADDAPDRLKEAL-GGPAD 156
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG DH I L + FA+ PG + K++ G L + +
Sbjct: 157 VVLSDMAAPTTGHPSTDHLRIIGLVEVALHFALEILTPGGTFVAKVFQGGTEKTLLDQLK 216
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ ++ V+ KPP+SR SAE +++ GF+G
Sbjct: 217 KNFTTVRHAKPPASRQGSAETYVVATGFRG 246
>gi|217970150|ref|YP_002355384.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thauera sp. MZ1T]
gi|217507477|gb|ACK54488.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thauera sp. MZ1T]
Length = 207
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 122/210 (58%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K+ +S W+ DP+VQ+A+ E YR R+AFKLLEID + LRPG V+D GAAPGSW
Sbjct: 3 KNKTSRAWVHDHVNDPWVQRAQAEGYRARAAFKLLEIDERDHLLRPGAVVVDLGAAPGSW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
Q+AVK PKG + ++D LP+ P+ G L DFT+ + + L L
Sbjct: 63 CQLAVKRCG--------PKGRIFALDLLPMEPVAGVEFLLG-DFTEDAVLEELEARLGGA 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+DVVLSDMAPN +G+ +D L + FAV + KPG ++K++ G + +
Sbjct: 114 SVDVVLSDMAPNLSGVATVDQARSVHLCELALDFAVRHLKPGGQFVVKVFQGEGFMEYRK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ + V++ KP +SR SAE++L+GRG
Sbjct: 174 QMEAAFVSVQVRKPKASRDRSAEVYLVGRG 203
>gi|365883861|ref|ZP_09422969.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. ORS 375]
gi|365287657|emb|CCD95500.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. ORS 375]
Length = 231
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 129/227 (56%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV +AK++ YR R+ +KLLEID K L+P
Sbjct: 5 TTGRMHVQVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGYRSRATYKLLEIDDKYHLLKP 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A + V ++ KG V+++D L + I G V ++ DF
Sbjct: 65 GMTVVDLGAAPGGWSQIAARRVG-----AEAGKGKVVAIDLLEMGEIPG-VTFAQLDFHA 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
D ++L ++ + DVV+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 QDAPEKLRAMM-GGRADVVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + +L + R Y+ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKTFQSGADAELLAQLKRDYASVRHVKPAASRQDSSERYVLAMGFRG 224
>gi|144900076|emb|CAM76940.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Magnetospirillum
gryphiswaldense MSR-1]
Length = 238
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 126/216 (58%), Gaps = 10/216 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYVQ+A+K YR R+AFKL+E+D + L+PGL+V+D GAAPG
Sbjct: 29 RGRKPSSTRWLQRQLNDPYVQEARKLGYRSRAAFKLIELDDRFHLLKPGLRVVDLGAAPG 88
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAV+ V + +G V+ +D L P+ GA+ + DF D DRL L
Sbjct: 89 GWTQVAVQRVGA--------RGKVVGMDILEYDPVPGAICML-GDFLADDSPDRLKEAL- 138
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D D+V+SDMA TG DH I L + FA+ PG + K++ G L
Sbjct: 139 DGLADLVVSDMAAPTTGHPPTDHLRIIGLVEVALHFALEVLAPGGTFIAKVFQGGTEKSL 198
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + ++ V+ KPP+SR SAE +++ GFKG+
Sbjct: 199 LDLLKKNFTTVRHAKPPASRKESAETYVIATGFKGR 234
>gi|365858113|ref|ZP_09398069.1| ribosomal RNA large subunit methyltransferase J [Acetobacteraceae
bacterium AT-5844]
gi|363714683|gb|EHL98171.1| ribosomal RNA large subunit methyltransferase J [Acetobacteraceae
bacterium AT-5844]
Length = 228
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 124/216 (57%), Gaps = 10/216 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ +S WL+RQ DPYV+ AK +R R+AFK+LE+D K K RP +V+D GAAPG
Sbjct: 19 KGRTTASQKWLERQLNDPYVRAAKAAGWRSRAAFKILELDEKYKLFRPNQRVVDLGAAPG 78
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAV+ V G V+ +D LP+ I GA +L + DF Q D ++ V
Sbjct: 79 GWTQVAVQRVGDSGK--------VVGLDLLPMDEIPGATLL-QGDF-QDDAVEQAVLEAL 128
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D D+VLSDMAPN TG DH I L + FA PG + K + G +L
Sbjct: 129 DGPADLVLSDMAPNTTGHNATDHLRILGLIELALDFAGKVLTPGGAFVAKAFQGGTEREL 188
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ VK KPP+SR SAE++++ +GF+G+
Sbjct: 189 LNRMKRDFASVKHAKPPASRKGSAEMYVVAQGFRGE 224
>gi|367475373|ref|ZP_09474836.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. ORS 285]
gi|365272386|emb|CCD87304.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. ORS 285]
Length = 231
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 129/227 (56%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV +AK++ YR R+ +KLLEID K L+P
Sbjct: 5 TTGRMHVQVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGYRSRATYKLLEIDDKYHMLKP 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A + V ++ KG V+++D L + I G V ++ DF
Sbjct: 65 GMTVVDLGAAPGGWSQIAARRVG-----AEAGKGKVIAIDLLEMGEIPG-VTFTQLDFHA 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
D ++L ++ + DVV+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 EDAPEKLRAMI-GGRADVVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + +L + R Y+ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKTFQSGADAELLAQLKRDYATVRHVKPAASRQDSSERYVLAMGFRG 224
>gi|227820952|ref|YP_002824922.1| ribosomal RNA large subunit methyltransferase J [Sinorhizobium
fredii NGR234]
gi|254809557|sp|C3MGQ4.1|RLME_RHISN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|227339951|gb|ACP24169.1| putative ribosomal RNA large subunit methyltransferase J
[Sinorhizobium fredii NGR234]
Length = 245
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 129/227 (56%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
+G KL ++V KGK SS WL+R DPYVQ+A+ E YR R+AFKLLEID K K L
Sbjct: 11 SGRKLGQKVKKGKLKASSRRWLERHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILAGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ NS D + V ++D L + PI G L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTNSTDADPR-----VAAIDFLEMDPIPGVRFL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+ ++L + D+VLSDMA TG R+ DH L FAV G L
Sbjct: 125 EAPEKLKEAIGGTP-DLVLSDMAAPTTGHRQTDHLRTMHLCEVAAHFAVDVLAKGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + +SQV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLNMLKQNFSQVIHVKPASSRTESVEMFLLAKGFKGR 230
>gi|407784103|ref|ZP_11131288.1| 23S rRNA methylase [Oceanibaculum indicum P24]
gi|407198352|gb|EKE68389.1| 23S rRNA methylase [Oceanibaculum indicum P24]
Length = 231
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 127/224 (56%), Gaps = 12/224 (5%)
Query: 6 GPKLK-EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLK 64
GP ++ + + + HSS LWL+RQ DPYV +AK+ YR R+AFK+ ++D K F + +
Sbjct: 12 GPAVRVKTARKRSHSSTLWLQRQLNDPYVAEAKRLGYRSRAAFKIAQLDDKFGFFKGAKR 71
Query: 65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDI 124
++D GAAPG W+QVAV+ + P ++++D LP+ + G VL DF D
Sbjct: 72 IVDLGAAPGGWTQVAVE---------RAPNATIVALDILPMDEMGGVTVL-HMDFLAEDA 121
Query: 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184
+RL T L K D+VLSDMAP TG + DH I L + FA PG L K+
Sbjct: 122 PERLKTAL-GGKADLVLSDMAPPTTGHTKTDHLRIMGLCEIALAFAEEVLAPGGTFLCKV 180
Query: 185 WDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ G L + ++ VK KPP+SRS SAEL+++ GF+G
Sbjct: 181 FQGGTEGALLNRMKLCFATVKHAKPPASRSDSAELYVIASGFRG 224
>gi|307947081|ref|ZP_07662416.1| ribosomal RNA large subunit methyltransferase J [Roseibium sp.
TrichSKD4]
gi|307770745|gb|EFO29971.1| ribosomal RNA large subunit methyltransferase J [Roseibium sp.
TrichSKD4]
Length = 231
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 122/215 (56%), Gaps = 6/215 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G+ SS WL+RQ DPYV++AK + YR R+A+KLLEID K + L+PG +V+D GAAPG
Sbjct: 22 GRRESSTRWLERQLNDPYVRRAKADGYRSRAAYKLLEIDEKHRLLKPGYRVVDLGAAPGG 81
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W QVAV V S PK V+ +D L + + G L K DF D + L+ L
Sbjct: 82 WCQVAVDKVKS---TEDAPK--VVGIDYLDMDYLPGLAFLKK-DFLDDDAPEALMNALGG 135
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
D+VLSDMA TG R+ DH T L + FA PG L K++ G QL
Sbjct: 136 GLPDLVLSDMAARTTGHRQTDHLRTTHLFEVAVDFARQNLVPGGSFLAKVFRGGTENQLL 195
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R + V +KPP+SR S EL+++ +GF+G+
Sbjct: 196 TEMKRDFKSVAHVKPPASRKESPELYVIAKGFRGR 230
>gi|341889611|gb|EGT45546.1| hypothetical protein CAEBREN_04616 [Caenorhabditis brenneri]
Length = 231
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 120/211 (56%), Gaps = 16/211 (7%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
+++RQ D + +A++ N+R RSAFKL+EID K KFL+P V+D G APGSW QV V
Sbjct: 31 YIQRQSTDEFTVRAREHNFRARSAFKLMEIDEKFKFLKPESTVIDIGCAPGSWLQVVV-- 88
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL-KDDKLDVVL 141
+ P G V+ VD + PI GA +LS D T P++Q ++ L K +DVVL
Sbjct: 89 -------DRCPNGYVMGVDLQNVLPIRGADILSLSDITSPEVQSKIREKLAKRGSVDVVL 141
Query: 142 SDMAPNATGMREMDHDLITQLAIAVIRF-----AVTYSKPGADCLIKIWDGRNRPQLEES 196
SDMAPN TG DH + +L V R A SK G L KIWDG R +
Sbjct: 142 SDMAPNPTGDNATDHLRLIELCRTVFRLFTEEKAFELSKNGV-FLCKIWDGSARGEFIRE 200
Query: 197 ITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ +S VK +KP + R +SAEL+L R FK
Sbjct: 201 LSNRFSTVKTVKPTACRDNSAELYLFCRNFK 231
>gi|386395904|ref|ZP_10080682.1| 23S rRNA methylase [Bradyrhizobium sp. WSM1253]
gi|385736530|gb|EIG56726.1| 23S rRNA methylase [Bradyrhizobium sp. WSM1253]
Length = 228
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 121/210 (57%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV KAK YR R+AFKLLEID K + L+ G+ V+D GAAPG WSQ+
Sbjct: 22 SSKLWLERQLNDPYVVKAKALGYRSRAAFKLLEIDDKYRLLKHGMAVVDLGAAPGGWSQI 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V S KG V+++D L I I G V ++ DF D D+L +L D D
Sbjct: 82 AAKRVG-----SVDGKGKVIAIDLLEIPEIAG-VEFAQLDFMDNDAPDKLKAML-DGGAD 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N TG R+ D I L FA KPG L K + +L +
Sbjct: 135 IVMSDMAANTTGHRKTDQLRIVGLIETAAAFACDVLKPGGTFLAKAFQSGADAELLAQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ V+ +KP +SR+ S+E ++L GF+G
Sbjct: 195 RDFATVRHVKPAASRADSSERYVLATGFRG 224
>gi|296534248|ref|ZP_06896731.1| ribosomal RNA large subunit methyltransferase J [Roseomonas
cervicalis ATCC 49957]
gi|296265422|gb|EFH11564.1| ribosomal RNA large subunit methyltransferase J [Roseomonas
cervicalis ATCC 49957]
Length = 228
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 127/216 (58%), Gaps = 10/216 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ +S WL+RQ DPYV+ AK +R R+AFKL+E+D K K L+PG +++D GAAPG
Sbjct: 19 KGRTTASQRWLERQLNDPYVRAAKAAGWRSRAAFKLIELDEKYKLLKPGQRIVDLGAAPG 78
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAV+ +G V+ +D LP+ I GA +L + DF ++ ++ L
Sbjct: 79 GWTQVAVQRAGD--------RGKVVGLDLLPMDVIAGATLL-QGDFQDEAVEQAVLDAL- 128
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D D+V+SDMAPN TG DH I L + FA PG + K++ G ++
Sbjct: 129 DGPADLVMSDMAPNTTGHNATDHLRILGLVELALDFADKVLVPGGAFIAKVFQGGTEREM 188
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R Y+ V+ KPP+SR SAE++++ +G++G+
Sbjct: 189 LNRLKRDYATVRHAKPPASRKDSAEMYVVAQGYRGE 224
>gi|456356009|dbj|BAM90454.1| ribosomal RNA large subunit (23S) methyltransferase [Agromonas
oligotrophica S58]
Length = 231
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 130/227 (57%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV +AK++ YR R+A+KLLE+D K L+
Sbjct: 5 TTGRMHVQVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGYRSRAAYKLLEVDDKHHLLKS 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A + V ++ KG V+++D L + I G V ++ DF
Sbjct: 65 GMTVVDLGAAPGGWSQIAARRVG-----AEAGKGKVIAIDLLEMGEIPG-VTFTQLDFHA 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
PD ++L ++ + DVV+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 PDAPEKLREMI-GGRADVVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGAFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + +L + R Y+ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKTFQSGADAELLAQLKRDYASVRHVKPAASRQDSSERYVLAMGFRG 224
>gi|390949340|ref|YP_006413099.1| 23S rRNA methylase [Thiocystis violascens DSM 198]
gi|390425909|gb|AFL72974.1| 23S rRNA methylase [Thiocystis violascens DSM 198]
Length = 212
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS WL R +DPYV+++++E YR R+A+KLLEI K + L PG +VLD GAAPGSW
Sbjct: 4 KSKSSRRWLDRHHSDPYVKRSQREGYRSRAAYKLLEIQEKDRILTPGTRVLDLGAAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+A +LV PKG V+++D LP+ +DG V L + DF + + +L + +
Sbjct: 64 SQIASRLVG--------PKGQVIALDLLPMEALDGVVFL-QGDFREDSVLSQLREAIGAE 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+VLSDMAPN TG D + L + A KPG ++K + G
Sbjct: 115 PLDLVLSDMAPNITGTVVTDQSRVVYLLELALDLARECLKPGGSLVVKAFQGEGFDAYLL 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R + +V KP SSR+ S E++L+ +GF K
Sbjct: 175 ELRRSFHRVASRKPQSSRAQSREIYLVAKGFMAK 208
>gi|89068308|ref|ZP_01155718.1| ribosomal RNA large subunit methyltransferase J [Oceanicola
granulosus HTCC2516]
gi|89046225|gb|EAR52283.1| ribosomal RNA large subunit methyltransferase J [Oceanicola
granulosus HTCC2516]
Length = 236
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 129/218 (59%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS LWL+RQ DPYV++AK + YR R+A+K+LE+D K +FL PG +V+D G
Sbjct: 21 KTARGRKLSSTLWLQRQLNDPYVKRAKADGYRGRAAYKILELDDKYRFLVPGARVVDLGC 80
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAV+ N+ G S + G VL +D + PI GA + + DF D +++
Sbjct: 81 APGGWCQVAVRRTNALGERSDKAVGKVLGIDLQEVEPIAGAEI-HQLDFLADDADEQVKD 139
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L DVV+SDMA +A+G ++ DH I L A FA G + K+ G
Sbjct: 140 WLA-GPADVVMSDMAASASGHKQTDHLRIVALCEAAAYFAFDVLVEGGTFVAKVLAGGAE 198
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L+ + + +++V +KPP+SR+ S+E F++ GF+G
Sbjct: 199 GSLQTLLKQRFTKVVNVKPPASRADSSEKFVVATGFRG 236
>gi|170580731|ref|XP_001895384.1| ribosomal RNA methyltransferase [Brugia malayi]
gi|158597684|gb|EDP35763.1| ribosomal RNA methyltransferase, putative [Brugia malayi]
Length = 238
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 125/215 (58%), Gaps = 9/215 (4%)
Query: 14 KGKDHSSHL-WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAP 72
KGK ++ L +L +Q++D + +KA++ +YR RSA+KLLEI+ K K ++PG+ V+D GAAP
Sbjct: 23 KGKKSTATLKYLHKQWSDEFSKKAREHSYRARSAYKLLEINEKYKIIKPGMVVVDVGAAP 82
Query: 73 GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL 132
GSW QV +V + YD+ L+L +D PI PI G L D T + + IL
Sbjct: 83 GSWCQVVADIVQPNVYDN----ALILGIDLQPILPISGVNFLDLSDITAQKTHENIKQIL 138
Query: 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS----KPGADCLIKIWDGR 188
+DVV+SDMAPN TG +DH+ I L V+ +V S L KIWDG
Sbjct: 139 NGRSVDVVISDMAPNPTGDGGIDHERILSLCATVLELSVRKSVIPLVKNGTFLCKIWDGP 198
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
R + E + + + V +KP +SR HSAE++LL
Sbjct: 199 RREEFIERLKQDFRNVYTVKPKASRDHSAEIYLLA 233
>gi|209963501|ref|YP_002296416.1| ribosomal RNA large subunit methyltransferase J [Rhodospirillum
centenum SW]
gi|209956967|gb|ACI97603.1| ribosomal RNA large subunit methyltransferase J,RrmJ
[Rhodospirillum centenum SW]
Length = 227
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 123/210 (58%), Gaps = 6/210 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV +A+K YR R+AFKLL++D K FLR G +++D GAAPG W+QV
Sbjct: 12 SSTRWLERQLNDPYVAEARKRGYRSRAAFKLLQLDEKFHFLRRGQRIVDLGAAPGGWTQV 71
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV +V + G V+ +D L + P+ GA ++ + DF DRL +L + D
Sbjct: 72 AVAVVKP----GEGSTGKVVGLDLLEVEPVPGATII-QLDFLDASAPDRLKELL-GGQAD 125
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA N TG DH I LA A FA PG + K++ G L + +
Sbjct: 126 IVLSDMAANTTGHPATDHLRIIGLAEAAYDFAADVLAPGGAFVCKLFQGGATKGLLDLLK 185
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ V+ KPP+SR+ S+E +++ GF+G
Sbjct: 186 RDFATVRHAKPPASRADSSETYVVATGFRG 215
>gi|374574891|ref|ZP_09647987.1| 23S rRNA methylase [Bradyrhizobium sp. WSM471]
gi|374423212|gb|EHR02745.1| 23S rRNA methylase [Bradyrhizobium sp. WSM471]
Length = 229
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 119/210 (56%), Gaps = 6/210 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV KAK YR R+AFKLLEID K + L+ G+ V+D GAAPG WSQ+
Sbjct: 22 SSKLWLERQLNDPYVVKAKALGYRSRAAFKLLEIDDKYRLLKHGMAVVDLGAAPGGWSQI 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V S KG V+++D L I I G V ++ DF D +L +L D
Sbjct: 82 AAKRVG-----SVDGKGKVIAIDLLEIPEIAG-VEFAQLDFMDNDAPGKLKAMLDGGGAD 135
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG R+ D I L FA KPG L K + +L +
Sbjct: 136 VVMSDMAANTTGHRKTDQLRIVGLIETAAAFACDVLKPGGTFLAKAFQSGADAELLAQLK 195
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ V+ +KP +SR+ S+E ++L GF+G
Sbjct: 196 RDFATVRHVKPAASRADSSERYVLATGFRG 225
>gi|148255007|ref|YP_001239592.1| ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. BTAi1]
gi|158513280|sp|A5EHP2.1|RLME_BRASB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|146407180|gb|ABQ35686.1| 23S rRNA Um-2552 2'-O-methyltransferase [Bradyrhizobium sp. BTAi1]
Length = 231
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 129/227 (56%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV +AK++ YR R+ +KL+EID K L+P
Sbjct: 5 TTGRMHVQVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGYRSRATYKLIEIDDKYHLLKP 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A + V ++ KG V+++D L + + G V ++ DF
Sbjct: 65 GMTVVDLGAAPGGWSQIAARRVG-----AEAGKGKVIAIDLLEMGEVPG-VTFTQMDFHA 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
D ++L +L + DVV+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 QDAPEKLRAML-GGRADVVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + +L + R Y+ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKTFQSGADAELLAQLKRDYATVRHVKPAASRQDSSERYVLAMGFRG 224
>gi|324523982|gb|ADY48339.1| Ribosomal RNA methyltransferase [Ascaris suum]
Length = 248
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
+++RQ D +V KA++ +YR RSAFKL+EI+++ KF+ G V+D G+APGSW QV +L
Sbjct: 43 YIRRQLRDEFVLKAREHSYRARSAFKLIEINNRYKFINRGAVVVDVGSAPGSWCQVIAEL 102
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
V + VL +D P+ P+ G +++ D T P+ R+ L +D V+S
Sbjct: 103 V----HKEHHKDAYVLGIDLQPMVPLAGVDLITMADITSPETHRRIKQYLSGRSVDAVVS 158
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRF-----AVTYSKPGADCLIKIWDGRNRPQLEESI 197
DMAPN +G + +DH+ I L ++ F AV K G L KIWDG+ R QL ES+
Sbjct: 159 DMAPNPSGDKTVDHERIIALCEQLLSFCCGNAAVIPLKKGGTFLCKIWDGQRRLQLIESL 218
Query: 198 TRFYSQVKILKPPSSRSHSAELFLLG 223
++ V +KP +SR HSAEL+LL
Sbjct: 219 KGYFHIVHNIKPDASRDHSAELYLLA 244
>gi|262371957|ref|ZP_06065236.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
junii SH205]
gi|262311982|gb|EEY93067.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
junii SH205]
Length = 216
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 125/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S+ GLV++ D LP+ + L + DF + ++ ++L+ IL ++D
Sbjct: 73 AGKLVGSN--------GLVIASDILPMDALPDVTFL-QGDFREEEVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 VVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFIVKVFQGSGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPEASRARSKEVFLIGQGRK 212
>gi|255318895|ref|ZP_05360121.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
radioresistens SK82]
gi|262378850|ref|ZP_06072007.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
radioresistens SH164]
gi|255304151|gb|EET83342.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
radioresistens SK82]
gi|262300135|gb|EEY88047.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
radioresistens SH164]
Length = 216
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 125/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV KGLV++ D LP+ + V + DF + ++ ++L+ IL ++D
Sbjct: 73 AGKLVGD--------KGLVIASDILPMDAL-ADVTFLQGDFREEEVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 VVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K +KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTVKPAASRARSKEVFLIGQGRK 212
>gi|114705167|ref|ZP_01438075.1| cell division protein ftsJ [Fulvimarina pelagi HTCC2506]
gi|114539952|gb|EAU43072.1| cell division protein ftsJ [Fulvimarina pelagi HTCC2506]
Length = 244
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G SS W++RQ DPYV++AK + YR R+A+KL+E+D + K L+PG +V+D GAAPG
Sbjct: 18 RGLKASSRRWIERQLNDPYVRQAKADGYRSRAAYKLIEMDDRYKLLKPGQRVVDLGAAPG 77
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QV+V+ V S D + V+ +D L + P+ GA +L DF + DRL+ L
Sbjct: 78 GWCQVSVERVGSENDDIR-----VVGIDFLEVDPVSGAEILL-MDFLDDEAPDRLMEALG 131
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+VLSDMA G R+ DH L FAV KPG L K + G L
Sbjct: 132 GSP-DIVLSDMAAPTIGHRQTDHLRTMHLCEVAADFAVRTLKPGGHFLCKTFQGGTERDL 190
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
E + R + V +KPP+SR S EL++L + FKG+
Sbjct: 191 LELLKRNFKAVHHVKPPASRDGSVELYILAKDFKGR 226
>gi|107103849|ref|ZP_01367767.1| hypothetical protein PaerPA_01004920 [Pseudomonas aeruginosa PACS2]
Length = 207
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 122/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+++ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ HG + +L +D +P V + DFT+ + R++ + D
Sbjct: 63 SQVTSRVIGDHG---RLIASDILEMDSIP------DVTFIQGDFTEDAVFARILEAIGDH 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G Q +
Sbjct: 114 PVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +V++ KP SSR S E +LL RGF+G+
Sbjct: 174 QAREMFDKVQMRKPLSSRDRSREQYLLARGFRGE 207
>gi|365897776|ref|ZP_09435760.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. STM 3843]
gi|365421521|emb|CCE08302.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. STM 3843]
Length = 221
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 124/210 (59%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ YR R+A+KLLEID K L+PG+ V+D GAAPG WSQ+
Sbjct: 12 SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLLEIDDKYHVLKPGMTVVDLGAAPGGWSQI 71
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V G D+ +G V+++D L + I G V ++ DF D D+L+ +L + D
Sbjct: 72 AAKRV---GADA--GRGRVIAIDLLEMGEIPG-VTFTQLDFHASDAPDKLMAML-GGRAD 124
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG R+ D I L FA KPG + K + L +
Sbjct: 125 VVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGAFVAKTFQSGADADLLAQLK 184
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ V+ +KP +SR S+E ++L GF+G
Sbjct: 185 RDFASVRHVKPAASRQDSSERYVLALGFRG 214
>gi|86750307|ref|YP_486803.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris HaA2]
gi|123292402|sp|Q2IV68.1|RLME_RHOP2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|86573335|gb|ABD07892.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris HaA2]
Length = 236
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 120/210 (57%), Gaps = 6/210 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL RQ DPYV +AK++ YR R+A+KL EID K FL+ G V+D GAAPG WSQV
Sbjct: 22 SSKLWLDRQLNDPYVAQAKRDGYRSRAAYKLTEIDDKYHFLKSGQAVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K + S +G ++++D L + I G V ++ DF D+L +L D D
Sbjct: 82 AAKRIG-----SANGRGKLIAIDLLEMGEIPG-VTFAQLDFLDSAAPDKLREMLGGDGAD 135
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG R+ D I L + +FA KPG + K++ L +
Sbjct: 136 VVMSDMAGNTTGHRKTDQLRIVGLVESAAQFASEVLKPGGIFVAKVFQSGADATLMNQLK 195
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ VK +KP +SR S+E ++L GF+G
Sbjct: 196 RDFATVKHVKPAASRKDSSERYVLAMGFRG 225
>gi|310816173|ref|YP_003964137.1| ribosomal RNA large subunit methyltransferase J [Ketogulonicigenium
vulgare Y25]
gi|308754908|gb|ADO42837.1| ribosomal RNA large subunit methyltransferase J [Ketogulonicigenium
vulgare Y25]
Length = 249
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 129/216 (59%), Gaps = 2/216 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL+RQ DPYV +A+ E YR R+A+K++E+D K FL+PG +V+D G APG
Sbjct: 27 KGRKLSSTKWLERQLNDPYVVRARAEGYRGRAAYKIMELDDKFGFLKPGARVVDLGCAPG 86
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV +N+ G + +P G +L +D + P+ GA V DF D D V
Sbjct: 87 GWLQVAVPRINALGERAGKPVGRILGLDLQVVDPVPGAEV-HVLDFLADD-ADLQVKEWL 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVV+SDMA +A+G ++ DH I L A A PG + K+ G +L
Sbjct: 145 GGQADVVMSDMAASASGHKQTDHLRIIALCEAAAYLAFDVLTPGGTFVCKVLAGGAEGEL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
++ + + +++V+ +KPPSSRS S+E F++ G++G+
Sbjct: 205 QKILKQKFTKVENVKPPSSRSDSSEKFVVATGYRGR 240
>gi|407719622|ref|YP_006839284.1| cell division protein [Sinorhizobium meliloti Rm41]
gi|418399987|ref|ZP_12973532.1| ribosomal RNA large subunit methyltransferase E [Sinorhizobium
meliloti CCNWSX0020]
gi|359506104|gb|EHK78621.1| ribosomal RNA large subunit methyltransferase E [Sinorhizobium
meliloti CCNWSX0020]
gi|407317854|emb|CCM66458.1| cell division protein [Sinorhizobium meliloti Rm41]
Length = 245
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 128/227 (56%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
+G KL ++V KGK SS W++R DPYVQ+A+ E YR R+AFKLLEID K K L
Sbjct: 11 SGRKLGQKVKKGKLKASSRRWIERHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILAGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ NS D + V ++D L + PI G L + DF P
Sbjct: 71 KRIIDLGAAPGSWSQIAAKVTNSTDADPR-----VAAIDFLEMDPIPGVRFL-QMDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+ ++L + D+VLSDMA TG R+ DH L FAV G L
Sbjct: 125 EAPEKLKQAIGGAP-DIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAKGFKGR 230
>gi|254502176|ref|ZP_05114327.1| ribosomal RNA large subunit methyltransferase J [Labrenzia
alexandrii DFL-11]
gi|222438247|gb|EEE44926.1| ribosomal RNA large subunit methyltransferase J [Labrenzia
alexandrii DFL-11]
Length = 236
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 123/214 (57%), Gaps = 6/214 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G+ SS WL RQ DPYV++AK + YR R+A+KL+EID K K L+PG +V+D G APG
Sbjct: 23 GRRESSTRWLSRQLNDPYVRRAKIDGYRSRAAYKLIEIDDKHKLLKPGYRVVDLGCAPGG 82
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W Q+AV V S DS PK V+ +D L + + GAV L K DF D L+ L
Sbjct: 83 WCQIAVDRVKST-IDS--PK--VVGIDYLDMDHVRGAVFLKK-DFLDDDAPAALMEALGG 136
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
K DVVLSDMA TG ++ DH T L I FA PG L K++ G +
Sbjct: 137 HKPDVVLSDMAAPTTGHKQTDHLRTTHLFEIAIDFARRNLVPGGSFLAKVFRGGTENAML 196
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + R + V LKPP+SR S EL+++ +GF+G
Sbjct: 197 QELKREFKSVAHLKPPASRKESPELYVIAKGFRG 230
>gi|220934156|ref|YP_002513055.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio
sulfidophilus HL-EbGr7]
gi|254809560|sp|B8GNX9.1|RLME_THISH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|219995466|gb|ACL72068.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 207
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 121/212 (57%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SSH WLK F D YV++A++E YR R+ +KL EI + + LR G+ V+D GAAPG W
Sbjct: 3 RSKSSHRWLKEHFDDEYVKRAQQEGYRSRAVYKLQEIQERDRLLRQGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+Q A LV HG V++ D LP+ P+ G V + + DF + ++ +RL+ +L +
Sbjct: 63 TQYAAGLVGKHGR--------VVASDILPMDPLPG-VTIVEGDFREAEVLERLLAVLGEG 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+V+SDMAPN +GM +D LA A T KPG D L+K++ G +
Sbjct: 114 GADLVMSDMAPNMSGMDAVDQPRAMYLAELAAELARTVLKPGGDFLVKLFQGAEFDEYVR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ Y +V I KP +SR S E++ + RG K
Sbjct: 174 MLRTEYDKVSIRKPKASRPRSREVYAVARGRK 205
>gi|114327810|ref|YP_744967.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
gi|122327225|sp|Q0BT08.1|RLME_GRABC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|114315984|gb|ABI62044.1| methyltransferase [Granulibacter bethesdensis CGDNIH1]
Length = 230
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 130/227 (57%), Gaps = 16/227 (7%)
Query: 5 TGPKLKEV----PKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLR 60
TGP+ K V + + +S WL RQ DPYV AK + +R R+AFKL+E+D K +
Sbjct: 10 TGPRGKVVMLKTARKRSVASQRWLTRQLNDPYVAAAKAQGWRSRAAFKLIELDDKFGLIS 69
Query: 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFT 120
G +V+D GAAPG W+QVA+ K+ +V+ VD LP+ P+ GA ++ + DF
Sbjct: 70 KGSRVIDLGAAPGGWTQVAM----------KRGAAVVVGVDLLPVDPVPGATLI-QGDFN 118
Query: 121 QPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADC 180
D+ RL +++ K D+V+SDMAPN TG DH I L + FA PG
Sbjct: 119 DDDMPARLSSLM-GGKADLVMSDMAPNTTGHAATDHMRIIALTELALHFAFDALAPGGAF 177
Query: 181 LIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ K++ G + QL E + + ++ V+ KP SSR S+EL+++ +GF+
Sbjct: 178 VAKVFQGGSEKQLLEPMKQRFASVRHAKPASSRKESSELYVVAKGFR 224
>gi|395767048|ref|ZP_10447586.1| ribosomal RNA large subunit methyltransferase E [Bartonella doshiae
NCTC 12862]
gi|395415660|gb|EJF82094.1| ribosomal RNA large subunit methyltransferase E [Bartonella doshiae
NCTC 12862]
Length = 242
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 125/211 (59%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + KFL+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV++V S ++QP V+ +D L + P+ G V+L + DF + +L+ L K D
Sbjct: 94 AVRIVGS---SNEQPS--VVGIDYLHVDPLPGVVML-EMDFLHANAPQKLIDAL-GTKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L FA++ KPG L K + G L ++
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTIYLCEVAADFALSVLKPGGVFLAKAFQGGAENSLLTTLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SR+ S EL+LL FKGK
Sbjct: 207 QNFKTVHHVKPPASRAESVELYLLALDFKGK 237
>gi|333909215|ref|YP_004482801.1| ribosomal RNA large subunit methyltransferase E [Marinomonas
posidonica IVIA-Po-181]
gi|333479221|gb|AEF55882.1| Ribosomal RNA large subunit methyltransferase E [Marinomonas
posidonica IVIA-Po-181]
Length = 206
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 127/213 (59%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS+ W+K F DPYV+K++++ YR R+++KL+EI+ K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKSSNNWMKEHFDDPYVKKSQQDGYRSRASYKLIEINDKDKLIRPGMSVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+A KL+ KG +++ D L + P+ G V + DFT+ ++ + ++ + D
Sbjct: 63 SQIAAKLIGD--------KGTIVASDILEMAPLPG-VRFVQGDFTEQEVYEAILAEIGDQ 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K D+V+SDMAPN +G D L + A +PG + L+K++ G + +
Sbjct: 114 KADLVISDMAPNMSGNSSSDQPQAMYLVELALDMAAHVLRPGGNFLVKVFQGEGFEEYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + V KP +SR+ S E++LLGR +KG
Sbjct: 174 AMREQFGSVVTRKPDASRARSREVYLLGRQYKG 206
>gi|402704003|ref|ZP_10851982.1| 23S rRNA methyltransferase J [Rickettsia helvetica C9P9]
Length = 227
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 116/205 (56%), Gaps = 5/205 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS+ WLKRQ DPYV KA+ E +R R+A+KLLEI K K P +K++D GAAPG WSQV
Sbjct: 24 SSNNWLKRQLNDPYVAKARMEGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQV 83
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KL+ + + ++S+D L I PI G L K DF + D ++ ++ L D K D
Sbjct: 84 ASKLIKASDNNLNNK---IISIDLLEIEPIAGVEFLQK-DFFEEDTEELIIQAL-DGKAD 138
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N G + DH L FA+ KP + KI+ G +L +
Sbjct: 139 MVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLNKVK 198
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
R + VK KP SSRS S E++L+
Sbjct: 199 REFRTVKHFKPSSSRSESTEIYLVA 223
>gi|15964509|ref|NP_384862.1| cell division protein [Sinorhizobium meliloti 1021]
gi|334315223|ref|YP_004547842.1| ribosomal RNA large subunit methyltransferase E [Sinorhizobium
meliloti AK83]
gi|384528468|ref|YP_005712556.1| ribosomal RNA large subunit methyltransferase E [Sinorhizobium
meliloti BL225C]
gi|384534867|ref|YP_005718952.1| cell division protein ftsJ [Sinorhizobium meliloti SM11]
gi|433612521|ref|YP_007189319.1| 23S rRNA methylase [Sinorhizobium meliloti GR4]
gi|81635050|sp|Q92RT9.1|RLME_RHIME RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|15073686|emb|CAC45328.1| Probable cell division protein [Sinorhizobium meliloti 1021]
gi|333810644|gb|AEG03313.1| Ribosomal RNA large subunit methyltransferase E [Sinorhizobium
meliloti BL225C]
gi|334094217|gb|AEG52228.1| Ribosomal RNA large subunit methyltransferase E [Sinorhizobium
meliloti AK83]
gi|336031759|gb|AEH77691.1| cell division protein ftsJ [Sinorhizobium meliloti SM11]
gi|429550711|gb|AGA05720.1| 23S rRNA methylase [Sinorhizobium meliloti GR4]
Length = 245
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 127/227 (55%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
+G KL ++V KGK SS W++R DPYVQ+A+ E YR R+AFKLLEID K K L
Sbjct: 11 SGRKLGQKVKKGKLKASSRRWIERHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILAGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ NS D + V ++D L + PI G L + DF P
Sbjct: 71 KRIIDLGAAPGSWSQIAAKVTNSTDADPR-----VAAIDFLEMDPIPGVRFL-QMDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+ + L + D+VLSDMA TG R+ DH L FAV G L
Sbjct: 125 EAPENLKQAIGGAP-DIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAKGFKGR 230
>gi|83312878|ref|YP_423142.1| 23S rRNA methylase [Magnetospirillum magneticum AMB-1]
gi|123540815|sp|Q2W0P2.1|RLME_MAGSA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|82947719|dbj|BAE52583.1| 23S rRNA methylase [Magnetospirillum magneticum AMB-1]
Length = 244
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 124/212 (58%), Gaps = 9/212 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK+ YR R+AFK++++D + L+PGL+V+D GAAPG W+QV
Sbjct: 37 SSTLWLQRQLNDPYVHEAKRLGYRSRAAFKMIQLDERFHILKPGLRVVDLGAAPGGWTQV 96
Query: 79 AVKLVNSHGYDSKQPK--GLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDK 136
AV+ V + +PK G V+ +D L P+ GA+ L + DF D DRL L
Sbjct: 97 AVEKVG-----ALKPKGGGKVVGMDILEWDPLPGAITL-QGDFLADDAPDRLKEAL-GGP 149
Query: 137 LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES 196
DVVLSDMA TG DH I L + FA+ PG + K++ G L +
Sbjct: 150 ADVVLSDMAAPTTGHPSTDHLRIIGLVEVALHFALEVLTPGGTFVAKVFQGGTEKTLLDQ 209
Query: 197 ITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + ++ V+ KPP+SR SAE +++ GF+G
Sbjct: 210 LKKNFTTVRHAKPPASRQGSAETYVVATGFRG 241
>gi|338740038|ref|YP_004677000.1| ribosomal RNA large subunit methyltransferase J [Hyphomicrobium sp.
MC1]
gi|337760601|emb|CCB66434.1| Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
methyltransferase) [Hyphomicrobium sp. MC1]
Length = 252
Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 126/211 (59%), Gaps = 6/211 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV +K+E R R+AFKL EID++ FL+PG +++D GAAPG WSQ
Sbjct: 44 SSARWLERQLNDPYVAASKREGLRSRAAFKLREIDARYHFLKPGQRIIDLGAAPGGWSQE 103
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + V + KG V+++D L PI G ++ + DFT P ++ L + L+D D
Sbjct: 104 AAERVKA-----ADGKGQVVAIDYLAFEPIPGVDII-EMDFTDPGAEELLKSRLRDGHAD 157
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA G + DH I LA A FA +PG L K++ G L + +
Sbjct: 158 VVLSDMAAPTVGHAKTDHLRIMGLAEAAAAFAADVLEPGGAFLCKVFQGGTERDLLDMLK 217
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R + V+ +KPP+SR+ S+EL++L GF+G+
Sbjct: 218 RDFKVVRHVKPPASRAESSELYVLATGFRGE 248
>gi|365890280|ref|ZP_09428840.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. STM 3809]
gi|365333900|emb|CCE01371.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. STM 3809]
Length = 231
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 129/227 (56%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV +AK++ YR R+ +KL+EID K L+P
Sbjct: 5 TTGRMHVQVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGYRSRATYKLIEIDDKFHLLKP 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A + V ++ KG V+++D L + I G V ++ DF
Sbjct: 65 GMTVVDLGAAPGGWSQIAARRVG-----AEAGKGKVVAIDLLEMGEIPG-VTFAQLDFHA 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
+ ++L ++ + DVV+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 HEAPEKLRAMM-GGRADVVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + +L + R Y+ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKTFQSGADAELLAQLKRDYASVRHVKPAASRQDSSERYVLAMGFRG 224
>gi|440225614|ref|YP_007332705.1| ribosomal RNA large subunit methyltransferase J [Rhizobium tropici
CIAT 899]
gi|440037125|gb|AGB70159.1| ribosomal RNA large subunit methyltransferase J [Rhizobium tropici
CIAT 899]
Length = 245
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 126/227 (55%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKD--HSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K + L+
Sbjct: 11 TGRKLGQRVKKKKLKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEIDEKHQILKGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ +S D + V ++D L + PI G +L + DF +P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTDSTEEDIR-----VAAIDFLEMAPIPGVSIL-QLDFLEP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
D RL+ + D+VLSDMA TG DH L FAV G L
Sbjct: 125 DAPQRLIDAVGGTP-DLVLSDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLAEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP +SR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLTFLKQNFRQVVHVKPGASRAESVEMFLLAKGFKGR 230
>gi|90420028|ref|ZP_01227937.1| ribosomal RNA large subunit methyltransferase J [Aurantimonas
manganoxydans SI85-9A1]
gi|90336069|gb|EAS49817.1| ribosomal RNA large subunit methyltransferase J [Aurantimonas
manganoxydans SI85-9A1]
Length = 255
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 121/216 (56%), Gaps = 7/216 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G SS WL+RQ DPYV++AK + YR R+A+KL+E+D + K L+PG +++D GAAPG
Sbjct: 19 RGLKLSSRRWLERQLNDPYVRRAKADGYRSRAAYKLIEMDDRYKLLKPGHRIVDLGAAPG 78
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV S D + V+ +D L + P+ GA +L DF D+L+ L
Sbjct: 79 GWCQVAVDRTGSTAADVR-----VVGIDYLTVEPVAGATILL-MDFLDDAAPDKLMETLG 132
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ D+VLSD+A TG R DH L FA+ KPG L K + G +L
Sbjct: 133 EAP-DIVLSDLAAPTTGHRPTDHIRTMHLCDVAADFAIRTLKPGGHFLAKTFQGGTEREL 191
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R + V +KPP+SR S EL++L + FKGK
Sbjct: 192 LTLLKRHFVSVHHVKPPASREGSVELYILAKSFKGK 227
>gi|91976736|ref|YP_569395.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris BisB5]
gi|123762792|sp|Q138J5.1|RLME_RHOPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91683192|gb|ABE39494.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris BisB5]
Length = 235
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 121/210 (57%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ YR R+A+KLLEID K FL+ GL V D GAAPG WSQ+
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLLEIDDKYHFLKSGLAVADLGAAPGGWSQI 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + +G V+++D L + I G V ++ DF DRL +L D
Sbjct: 82 AAKRVG-----APDGRGKVIAIDLLEMGEIPG-VTFAQLDFLDDAAPDRLREMLGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG R+ D I L + +FA KPG + K++ L +
Sbjct: 135 VVMSDMAANTTGHRKTDQLRIVGLVESAAQFASEVLKPGGTFVAKVFQSGADATLMTQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ VK +KP +SR S+E ++L GF+G
Sbjct: 195 RDFATVKHVKPAASRKDSSERYVLAMGFRG 224
>gi|330813886|ref|YP_004358125.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486981|gb|AEA81386.1| cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Candidatus Pelagibacter sp.
IMCC9063]
Length = 208
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 123/208 (59%), Gaps = 10/208 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K HSS LWL RQ DP V +AKK+NYR R+ FK LEI+ K +FL+ L ++D GAAPG
Sbjct: 7 KNLSHSSKLWLTRQLNDPLVAEAKKQNYRSRAIFKFLEINEKHQFLKNNLNIIDLGAAPG 66
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SWSQ K+ G+ +++D L PI+ ++ K DFT ++Q++LV +L+
Sbjct: 67 SWSQHTSKI---------NKDGVNIALDLLDTKPINNCKII-KGDFTSDEVQNKLVNLLE 116
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K D+VLSD+A N+TG R +D + + V++F++ + K LIK + G ++
Sbjct: 117 GKKFDIVLSDIAENSTGNRSLDSMRSNIITVEVMKFSLKHLKKNGKILIKTFSGVGNEEV 176
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFL 221
+ + +S+ +KP SSR S EL+L
Sbjct: 177 VDMAKKNFSKHIFIKPKSSRKDSKELYL 204
>gi|118589174|ref|ZP_01546581.1| cell division protein ftsJ [Stappia aggregata IAM 12614]
gi|118438503|gb|EAV45137.1| cell division protein ftsJ [Stappia aggregata IAM 12614]
Length = 235
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 120/214 (56%), Gaps = 6/214 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G+ SS WL+RQ DPYV++AK + YR R+A+KL+EID K K L+PG +V+D G APG
Sbjct: 22 GRRESSTRWLQRQLNDPYVRRAKMDGYRSRAAYKLIEIDDKHKLLKPGYRVVDLGCAPGG 81
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W QVAV+ V S PK V+ +D L + + G L K DF D L+ L
Sbjct: 82 WCQVAVQRVQS---SVDAPK--VVGIDYLEMDHVRGTTFLQK-DFLDDDAPAALMEALGG 135
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
K DVVLSDMA TG ++ DH T L I FA PG L K++ G L
Sbjct: 136 HKPDVVLSDMAAPTTGHKQTDHLRTTHLFEIAIDFARRNLVPGGSFLAKVFRGGTENALL 195
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R + V +KPP+SR S EL+++ +GF+G
Sbjct: 196 HDLKREFKSVAHIKPPASRKESPELYVIAKGFRG 229
>gi|46200783|ref|ZP_00207841.1| COG0293: 23S rRNA methylase [Magnetospirillum magnetotacticum MS-1]
Length = 247
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 124/213 (58%), Gaps = 9/213 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK+ +R R+AFKL+++D + L+PGL+V+D GAAPG W+QV
Sbjct: 37 SSTLWLQRQLNDPYVHEAKRLGFRSRAAFKLIQLDERFHILKPGLRVVDLGAAPGGWTQV 96
Query: 79 AVKLVNSHGYDSKQPK--GLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDK 136
AV V + +PK G V+ +D L P+ GA+ L + DF D DRL L
Sbjct: 97 AVDKVG-----ALRPKGGGKVVGMDILEWDPLPGAITL-QGDFLADDAPDRLKEAL-GGP 149
Query: 137 LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES 196
DVVLSDMA TG DH I L + FA+ PG + K++ G L +
Sbjct: 150 ADVVLSDMAAPTTGHPSTDHLRIIGLVEVALHFALEVLTPGGTFVAKVFQGGTEKTLLDQ 209
Query: 197 ITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ V+ KPP+SR SAE +++ GF+G+
Sbjct: 210 LKRNFTTVRHAKPPASRQGSAETYVVATGFRGE 242
>gi|339053445|ref|ZP_08648154.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [gamma proteobacterium IMCC2047]
gi|330721347|gb|EGG99422.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [gamma proteobacterium IMCC2047]
Length = 207
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 130/214 (60%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL F D YV+K++++ YR R+++KLLE+ K K +PG+ VLD G+APG W
Sbjct: 3 RSKSSGRWLDEHFNDQYVKKSQQDGYRSRASYKLLELQDKDKLFKPGMSVLDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVAV+LV KG V++ D LP+ PI GA + + DFT+ ++ D+++ +L +D
Sbjct: 63 SQVAVELVGD--------KGRVVASDILPMEPIAGADFV-EGDFTEMEVYDQILNVLGED 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+D+V+SDMAPN +G+ +D L + A KPG + K++ G +L +
Sbjct: 114 KVDLVISDMAPNMSGVSAVDQPKAMYLVELAVDMADQILKPGGALIAKVFHGDGFDELLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V+I KP +SR+ S E +L+ + FK +
Sbjct: 174 TTRSKFKKVQIRKPDASRARSKEQYLVAKDFKAQ 207
>gi|443473729|ref|ZP_21063751.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Pseudomonas pseudoalcaligenes
KF707]
gi|442904603|gb|ELS29580.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Pseudomonas pseudoalcaligenes
KF707]
Length = 207
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 122/215 (56%), Gaps = 9/215 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ +S WLK F DPYV+ A+K+ YR R+++KLLEI K + LRPG+ V+D GAAPG
Sbjct: 2 ARSKTSQRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQV +++ G + +L +D +P V + DFT+ ++ R++ + D
Sbjct: 62 WSQVTSRVIGDRG---RLIASDILEMDSIP------DVTFIQGDFTEDEVFSRILEAIGD 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G
Sbjct: 113 HPVDLVISDMAPNMSGVRAADQPRAMYLCELALDLASRVLRPGGDFLIKIFQGEGFDVYH 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +V++ KP SSR S E +LL RGF+G+
Sbjct: 173 KQVREMFDKVQMRKPLSSRDRSREQYLLARGFRGE 207
>gi|426254909|ref|XP_004021117.1| PREDICTED: putative ribosomal RNA methyltransferase 2, partial
[Ovis aries]
Length = 238
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 121/216 (56%), Gaps = 4/216 (1%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLEI + LRP G
Sbjct: 23 KSRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEI----RPLRPAPPGARRVGGGG 78
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
VAV+ VN+ G D P G VL VD L I+P++GA L D T P ++ +L
Sbjct: 79 GGGGVAVQRVNAAGTDPSAPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTFRKIQELLP 138
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R +DHD + L ++++ P L K W G +L
Sbjct: 139 GGRADVILSDMAPNATGIRSLDHDRLISLCLSLLDMVPEVLHPRGTFLCKTWAGSQSHRL 198
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + ++ +KP +SR S+E++LL ++GK
Sbjct: 199 RKRLTEEFQNIRTVKPEASRKESSEVYLLATQYRGK 234
>gi|239834096|ref|ZP_04682424.1| Ribosomal RNA large subunit methyltransferase J [Ochrobactrum
intermedium LMG 3301]
gi|239822159|gb|EEQ93728.1| Ribosomal RNA large subunit methyltransferase J [Ochrobactrum
intermedium LMG 3301]
Length = 241
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 121/210 (57%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K+K++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 39 SSRRWLQRHLNDPYVHKSKQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 98
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V S D V+ +D L + P+ G VVL + DF + +L+ L DK D
Sbjct: 99 AAKVVGSTDEDPH-----VVGIDYLHVDPLPG-VVLLEMDFLDDEAPRKLMEAL-GDKPD 151
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FA++ KPG L K + G +L +
Sbjct: 152 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAISVLKPGGHFLTKTFQGGTENELLALLK 211
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 212 QKFRSVHHVKPPASRAESVELYLLARDFKG 241
>gi|226951533|ref|ZP_03821997.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter sp. ATCC 27244]
gi|226837725|gb|EEH70108.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter sp. ATCC 27244]
Length = 216
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S+G +L +D LP V + DF + D+ ++L+ IL ++D
Sbjct: 73 AGKLVGSNGLVIASD---ILEMDALP------DVTFLQGDFREEDVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 VVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGSGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLIGQGRK 212
>gi|406035560|ref|ZP_11042924.1| 23S rRNA methyltransferase J [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 216
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 125/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV ++ GLV++ D LP+ + L + DF + ++ ++L+ IL ++D
Sbjct: 73 AGKLVGAN--------GLVIASDILPMDALPDVTFL-QGDFREEEVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGSGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DGFDVLKTAKPAASRARSKEVFLIGQGRK 212
>gi|444312098|ref|ZP_21147693.1| 23S rRNA methyltransferase J [Ochrobactrum intermedium M86]
gi|443484543|gb|ELT47350.1| 23S rRNA methyltransferase J [Ochrobactrum intermedium M86]
Length = 240
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 121/210 (57%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K+K++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLQRHLNDPYVHKSKQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V S D V+ +D L + P+ G VVL + DF + +L+ L DK D
Sbjct: 98 AAKVVGSTDEDPH-----VVGIDYLHVDPLPG-VVLLEMDFLDDEAPRKLMEAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FA++ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAISVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 211 QKFRSVHHVKPPASRAESVELYLLARDFKG 240
>gi|349574004|ref|ZP_08885966.1| ribosomal RNA large subunit methyltransferase J [Neisseria
shayeganii 871]
gi|348014404|gb|EGY53286.1| ribosomal RNA large subunit methyltransferase J [Neisseria
shayeganii 871]
Length = 212
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 124/221 (56%), Gaps = 9/221 (4%)
Query: 9 LKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDC 68
++ V + SS WL DPYV +A+K+ YR R+A+KLLEI+ K K ++PG V D
Sbjct: 1 MQAVMAVRSKSSKAWLHEHVNDPYVHQAQKDGYRARAAYKLLEINEKDKLIKPGTVVADL 60
Query: 69 GAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRL 128
G+APGSWSQVA KL KG V ++D LP+ P++G V + DF + + L
Sbjct: 61 GSAPGSWSQVAAKLAGK--------KGRVFALDILPMEPVEG-VSFIQGDFREDAVLAEL 111
Query: 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188
+L LD+V+ DMAPN +G D L + FA + KPG L+K++ G
Sbjct: 112 EALLDGRSLDLVICDMAPNMSGHAVSDQARSYHLCELALDFAANHLKPGGHLLVKVFQGA 171
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +++ ++QV++ KP +SR S+E +LLGR G+
Sbjct: 172 GYQEYVQAMREVFAQVQVRKPKASRDRSSETYLLGRNKLGE 212
>gi|169632637|ref|YP_001706373.1| cell division protein [Acinetobacter baumannii SDF]
gi|169794969|ref|YP_001712762.1| cell division protein [Acinetobacter baumannii AYE]
gi|184159245|ref|YP_001847584.1| 23S rRNA methylase [Acinetobacter baumannii ACICU]
gi|213157620|ref|YP_002320418.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii AB0057]
gi|215482520|ref|YP_002324708.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
AB307-0294]
gi|239503386|ref|ZP_04662696.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
AB900]
gi|260549221|ref|ZP_05823441.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter sp.
RUH2624]
gi|260556451|ref|ZP_05828669.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|301346065|ref|ZP_07226806.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
AB056]
gi|301511493|ref|ZP_07236730.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
AB058]
gi|301595416|ref|ZP_07240424.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
AB059]
gi|332855128|ref|ZP_08435711.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii 6013150]
gi|332868236|ref|ZP_08438078.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii 6013113]
gi|332876154|ref|ZP_08443936.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii 6014059]
gi|375135741|ref|YP_004996391.1| cell division protein [Acinetobacter calcoaceticus PHEA-2]
gi|384132939|ref|YP_005515551.1| Ribosomal RNA large subunit methyltransferase [Acinetobacter
baumannii 1656-2]
gi|384144357|ref|YP_005527067.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter baumannii MDR-ZJ06]
gi|385238686|ref|YP_005800025.1| 23S rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
gi|387122831|ref|YP_006288713.1| 23S rRNA methylase [Acinetobacter baumannii MDR-TJ]
gi|403674597|ref|ZP_10936844.1| 23S rRNA methyltransferase J [Acinetobacter sp. NCTC 10304]
gi|407933831|ref|YP_006849474.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii TYTH-1]
gi|416145188|ref|ZP_11600305.1| 23S rRNA methylase [Acinetobacter baumannii AB210]
gi|417546057|ref|ZP_12197143.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC032]
gi|417550643|ref|ZP_12201722.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-18]
gi|417553874|ref|ZP_12204943.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-81]
gi|417562283|ref|ZP_12213162.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC137]
gi|417564222|ref|ZP_12215096.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC143]
gi|417569951|ref|ZP_12220809.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC189]
gi|417573593|ref|ZP_12224447.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Canada BC-5]
gi|417575611|ref|ZP_12226459.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-17]
gi|417870479|ref|ZP_12515444.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH1]
gi|417874521|ref|ZP_12519372.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH2]
gi|417877458|ref|ZP_12522160.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH3]
gi|417884481|ref|ZP_12528678.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH4]
gi|421199035|ref|ZP_15656200.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC109]
gi|421204932|ref|ZP_15662042.1| cell division protein [Acinetobacter baumannii AC12]
gi|421454635|ref|ZP_15903982.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-123]
gi|421536783|ref|ZP_15983012.1| cell division protein [Acinetobacter baumannii AC30]
gi|421622646|ref|ZP_16063546.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC074]
gi|421626434|ref|ZP_16067263.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC098]
gi|421627892|ref|ZP_16068688.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC180]
gi|421632409|ref|ZP_16073065.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-13]
gi|421643272|ref|ZP_16083774.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-235]
gi|421646610|ref|ZP_16087056.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-251]
gi|421652655|ref|ZP_16093004.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC0162]
gi|421655326|ref|ZP_16095649.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-72]
gi|421657153|ref|ZP_16097427.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-83]
gi|421661122|ref|ZP_16101300.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC110]
gi|421667314|ref|ZP_16107387.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC087]
gi|421670290|ref|ZP_16110292.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC099]
gi|421673327|ref|ZP_16113269.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC065]
gi|421678860|ref|ZP_16118743.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC111]
gi|421688952|ref|ZP_16128641.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-143]
gi|421689808|ref|ZP_16129481.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-116]
gi|421694574|ref|ZP_16134195.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-692]
gi|421698675|ref|ZP_16138215.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-58]
gi|421704512|ref|ZP_16143957.1| 23S rRNA methyltransferase J [Acinetobacter baumannii ZWS1122]
gi|421708290|ref|ZP_16147669.1| 23S rRNA methyltransferase J [Acinetobacter baumannii ZWS1219]
gi|421787390|ref|ZP_16223744.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-82]
gi|421792651|ref|ZP_16228802.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-2]
gi|421796267|ref|ZP_16232333.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-21]
gi|421799956|ref|ZP_16235942.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Canada BC1]
gi|421805202|ref|ZP_16241092.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-A-694]
gi|421808412|ref|ZP_16244260.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC035]
gi|424051325|ref|ZP_17788857.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
baumannii Ab11111]
gi|424054544|ref|ZP_17792068.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
nosocomialis Ab22222]
gi|424058900|ref|ZP_17796391.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
baumannii Ab33333]
gi|424062363|ref|ZP_17799849.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
baumannii Ab44444]
gi|425741291|ref|ZP_18859443.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-487]
gi|425749438|ref|ZP_18867417.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-348]
gi|425752243|ref|ZP_18870160.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-113]
gi|427423412|ref|ZP_18913565.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-136]
gi|445401812|ref|ZP_21430431.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-57]
gi|445428576|ref|ZP_21438096.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC021]
gi|445451950|ref|ZP_21444883.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-A-92]
gi|445460145|ref|ZP_21448054.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC047]
gi|445469825|ref|ZP_21451405.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC338]
gi|445477088|ref|ZP_21454063.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-78]
gi|445490527|ref|ZP_21459240.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii AA-014]
gi|158513670|sp|A3M851.2|RLME_ACIBT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703271|sp|B7GY18.1|RLME_ACIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703272|sp|B7I636.1|RLME_ACIB5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703273|sp|B2HXD3.1|RLME_ACIBC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703274|sp|B0VSM4.1|RLME_ACIBS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703275|sp|B0VEE9.1|RLME_ACIBY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|169147896|emb|CAM85759.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter baumannii AYE]
gi|169151429|emb|CAP00164.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter baumannii]
gi|183210839|gb|ACC58237.1| 23S rRNA methylase [Acinetobacter baumannii ACICU]
gi|193078152|gb|ABO13095.2| cell division protein [Acinetobacter baumannii ATCC 17978]
gi|213056780|gb|ACJ41682.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii AB0057]
gi|213986569|gb|ACJ56868.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
AB307-0294]
gi|260407627|gb|EEX01100.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter sp.
RUH2624]
gi|260409710|gb|EEX03010.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|322509159|gb|ADX04613.1| Ribosomal RNA large subunit methyltransferase [Acinetobacter
baumannii 1656-2]
gi|323519187|gb|ADX93568.1| 23S rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
gi|325123186|gb|ADY82709.1| cell division protein [Acinetobacter calcoaceticus PHEA-2]
gi|332727631|gb|EGJ59050.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii 6013150]
gi|332733497|gb|EGJ64667.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii 6013113]
gi|332735652|gb|EGJ66697.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii 6014059]
gi|333367304|gb|EGK49318.1| 23S rRNA methylase [Acinetobacter baumannii AB210]
gi|342227871|gb|EGT92780.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH1]
gi|342228735|gb|EGT93614.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH2]
gi|342234266|gb|EGT98935.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH4]
gi|342235654|gb|EGU00240.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH3]
gi|347594850|gb|AEP07571.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter baumannii MDR-ZJ06]
gi|385877323|gb|AFI94418.1| 23S rRNA methylase [Acinetobacter baumannii MDR-TJ]
gi|395524865|gb|EJG12954.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC137]
gi|395554174|gb|EJG20180.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC189]
gi|395555978|gb|EJG21979.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC143]
gi|395565931|gb|EJG27578.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC109]
gi|395571100|gb|EJG31759.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-17]
gi|398325575|gb|EJN41743.1| cell division protein [Acinetobacter baumannii AC12]
gi|400209161|gb|EJO40131.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Canada BC-5]
gi|400212425|gb|EJO43384.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-123]
gi|400383945|gb|EJP42623.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC032]
gi|400386468|gb|EJP49542.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-18]
gi|400390291|gb|EJP57338.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-81]
gi|404559315|gb|EKA64579.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-143]
gi|404565312|gb|EKA70480.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-116]
gi|404567790|gb|EKA72906.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-692]
gi|404572371|gb|EKA77415.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-58]
gi|404664881|gb|EKB32844.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
baumannii Ab11111]
gi|404670644|gb|EKB38532.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
baumannii Ab33333]
gi|404672090|gb|EKB39930.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
baumannii Ab44444]
gi|407190346|gb|EKE61565.1| 23S rRNA methyltransferase J [Acinetobacter baumannii ZWS1122]
gi|407190903|gb|EKE62118.1| 23S rRNA methyltransferase J [Acinetobacter baumannii ZWS1219]
gi|407439293|gb|EKF45818.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
nosocomialis Ab22222]
gi|407902412|gb|AFU39243.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii TYTH-1]
gi|408504519|gb|EKK06266.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC0162]
gi|408508651|gb|EKK10330.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-72]
gi|408509458|gb|EKK11130.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-235]
gi|408517322|gb|EKK18866.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-251]
gi|408694669|gb|EKL40233.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC074]
gi|408695705|gb|EKL41260.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC098]
gi|408709289|gb|EKL54536.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-13]
gi|408709589|gb|EKL54833.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC180]
gi|408714204|gb|EKL59358.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-83]
gi|408716125|gb|EKL61245.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC110]
gi|409985296|gb|EKO41520.1| cell division protein [Acinetobacter baumannii AC30]
gi|410385012|gb|EKP37508.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC087]
gi|410385657|gb|EKP38142.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC099]
gi|410386761|gb|EKP39228.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC065]
gi|410391950|gb|EKP44313.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC111]
gi|410399595|gb|EKP51782.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-21]
gi|410399683|gb|EKP51868.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-2]
gi|410407670|gb|EKP59652.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-82]
gi|410408816|gb|EKP60761.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Canada BC1]
gi|410409452|gb|EKP61383.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-A-694]
gi|410415727|gb|EKP67511.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC035]
gi|425489133|gb|EKU55450.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-348]
gi|425493018|gb|EKU59266.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-487]
gi|425499189|gb|EKU65245.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-113]
gi|425699757|gb|EKU69361.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-136]
gi|444754867|gb|ELW79476.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-A-92]
gi|444761817|gb|ELW86195.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC021]
gi|444765790|gb|ELW90079.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii AA-014]
gi|444773380|gb|ELW97476.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC047]
gi|444773737|gb|ELW97829.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC338]
gi|444776595|gb|ELX00633.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-78]
gi|444782898|gb|ELX06771.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-57]
gi|452946692|gb|EME52187.1| 23S rRNA methyltransferase J [Acinetobacter baumannii MSP4-16]
Length = 216
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 124/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D LP+ + L + DF + + ++L+ IL ++D
Sbjct: 73 AGKLVGS--------KGLVIASDILPMDALPDVTFL-QGDFREEAVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLVGQGRK 212
>gi|431804517|ref|YP_007231420.1| 23S rRNA methyltransferase J [Pseudomonas putida HB3267]
gi|430795282|gb|AGA75477.1| 23S rRNA methyltransferase J [Pseudomonas putida HB3267]
Length = 208
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F DP+V++A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 4 RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFTQ ++ R++ + D
Sbjct: 64 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTQDEVLQRILEAVGDS 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G +D L + A KPG D LIKI+ G +
Sbjct: 115 HVDLVISDMAPNMSGTPAVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDVYLK 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LLGRGFKG
Sbjct: 175 DVRSKFDKVQMRKPSSSRDRSREQYLLGRGFKG 207
>gi|395789206|ref|ZP_10468729.1| ribosomal RNA large subunit methyltransferase E [Bartonella
taylorii 8TBB]
gi|395430253|gb|EJF96297.1| ribosomal RNA large subunit methyltransferase E [Bartonella
taylorii 8TBB]
Length = 240
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR RSA+KL+EI+ + KFL+ G KV+D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKIDGYRSRSAYKLIEINERYKFLKKGQKVIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
+LV S +++P V+ +D LPI P+ G V+L + DF D +L+ L K D
Sbjct: 94 VGRLVGS---SNEKPS--VVGIDYLPIDPLPGIVML-EMDFLHADAPQKLIDAL-GTKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L FA++ KP L K + G L ++
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTVHLCEVAADFALSVLKPRGHFLAKAFQGGAENTLLTTLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SR+ S EL+LL FKGK
Sbjct: 207 QNFKTVYHVKPPASRAESVELYLLALEFKGK 237
>gi|395765708|ref|ZP_10446300.1| ribosomal RNA large subunit methyltransferase E [Bartonella sp.
DB5-6]
gi|395410903|gb|EJF77445.1| ribosomal RNA large subunit methyltransferase E [Bartonella sp.
DB5-6]
Length = 240
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + KFL+ G KV+D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKIDGYRSRAAYKLIEINERYKFLKKGQKVIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +LV S +++P V+ +D LP+ P+ G V L + DF D +L+ L K D
Sbjct: 94 AGRLVGS---SNEKPS--VVGIDYLPVDPLPGVVTL-EIDFLHADAPQKLIDAL-GVKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R DH L FA++ KP L K + G L ++
Sbjct: 147 VVLSDMAAPTTGHRRTDHLRTVHLCEVAADFALSVLKPRGHFLAKAFQGGTENTLLTTLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPPSSR+ S EL+LL FKGK
Sbjct: 207 QNFKTVYHVKPPSSRAESVELYLLALEFKGK 237
>gi|293609978|ref|ZP_06692280.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828430|gb|EFF86793.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 207
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 124/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 4 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 63
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D LP+ + L + DF + + ++L+ IL ++D
Sbjct: 64 AGKLVGS--------KGLVIASDILPMDALPDVTFL-QGDFREEAVFEKLLNILNGRQVD 114
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 115 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVV 174
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 175 DSFDVLKTAKPAASRARSKEVFLVGQGRK 203
>gi|378825034|ref|YP_005187766.1| cell division protein ftsJ [Sinorhizobium fredii HH103]
gi|365178086|emb|CCE94941.1| cell division protein ftsJ [Sinorhizobium fredii HH103]
Length = 245
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 127/227 (55%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
+G KL +++ KGK SS WL+R DPYVQ+A+ E YR R+AFKLLEID K K L
Sbjct: 11 SGRKLGQKIKKGKLKASSRRWLERHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILSGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ NS D + V ++D L + PI G L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTNSTDADPR-----VAAIDFLEMDPIPGVRFL-QMDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L + D+VLSDMA TG R+ DH L FAV G L
Sbjct: 125 QAPEKLKEAIGGTP-DLVLSDMAAPTTGHRQTDHLRTMHLCEVAAHFAVDVLAEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLNMLKQNFRQVIHVKPASSRAESVEMFLLAKGFKGR 230
>gi|372279566|ref|ZP_09515602.1| ribosomal RNA large subunit methyltransferase E, partial
[Oceanicola sp. S124]
Length = 241
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 127/219 (57%), Gaps = 2/219 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV +A+ E YR R+AFK++E+D K +FL PG +V+D G
Sbjct: 15 KTARGRKLSSTRWLQRQLNDPYVARARAEGYRGRAAFKIMELDDKFRFLVPGARVVDLGC 74
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAV +N+ G + G VL VD + PI GA + + DF D ++
Sbjct: 75 APGGWIQVAVPRINALGEKKGKAVGTVLGVDLQEVDPIPGAEI-HQLDFMADDADVQVKE 133
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L + DVV+SDMA ++G ++ DH I L A A G + K+ G
Sbjct: 134 WLGGEA-DVVMSDMAAASSGHQQTDHLRIIALCEAAAYLAFDVLSEGGTFVAKVLAGGAE 192
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+L++ + + +++V +KPPSSRS S+E F++ GF+G+
Sbjct: 193 GELQKVLKQRFTKVHHMKPPSSRSDSSEKFVVATGFRGR 231
>gi|333901775|ref|YP_004475648.1| ribosomal RNA large subunit methyltransferase E [Pseudomonas fulva
12-X]
gi|333117040|gb|AEF23554.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas fulva
12-X]
Length = 210
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 122/214 (57%), Gaps = 9/214 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ +S WLK F DPYV+ A+K+ YR R+++KLLE+ K + LRPG+ V+D GAAPG
Sbjct: 2 ARSKTSQRWLKEHFDDPYVKMAQKDGYRSRASYKLLEVQEKDRILRPGMTVVDLGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQV +++ G + +L +D +P V + DFT+ + R++ + +
Sbjct: 62 WSQVTSRVIGDKG---RLIASDILEMDSIP------DVTFIQGDFTEDAVFARILEAIDN 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+D+V+SDMAPN +G+R D L + A KPG D LIKI+ G +
Sbjct: 113 QPVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVLKPGGDFLIKIFQGEGFDEYH 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + R + +V++ KP SSR S E +LL RGFKG
Sbjct: 173 KEVRRQFDKVQMRKPLSSRDRSREQYLLARGFKG 206
>gi|85715667|ref|ZP_01046647.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter sp. Nb-311A]
gi|85697606|gb|EAQ35483.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter sp. Nb-311A]
Length = 226
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK+E +R R+AFKL+E+D K +FL+P + V+D GAAPG WSQV
Sbjct: 22 SSKLWLERQLNDPYVAQAKREGWRSRAAFKLIEMDDKHRFLKPAMTVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + V + + KG V+++D L + I G V ++ DF + D+L+ ++ D
Sbjct: 82 AAQRVG-----ATEGKGKVIAIDLLEMPEIVG-VTFARLDFLDNNAPDKLLAMM-GGAAD 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA N TG R+ D + L + FA +PG + K++ L +
Sbjct: 135 VVLSDMAANTTGHRKTDQLRMVGLVESAAAFAADVLRPGGTFIAKVFQSGADAGLLVQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R + V+ +KP +SR S+E ++L GF+G+
Sbjct: 195 RDFQTVRHVKPAASRQDSSERYVLATGFRGR 225
>gi|170719899|ref|YP_001747587.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida W619]
gi|226705301|sp|B1J262.1|RLME_PSEPW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|169757902|gb|ACA71218.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida W619]
Length = 208
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F DP+V++A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 4 RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFTQ ++ +++ + D
Sbjct: 64 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTQDEVLQQILDAVGDS 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G E+D L + A KPG D LIKI+ G +
Sbjct: 115 HVDLVISDMAPNMSGTPEVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDMYLK 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LLG+GFKG
Sbjct: 175 DVRTKFDKVQMRKPSSSRDRSREQYLLGKGFKG 207
>gi|114569722|ref|YP_756402.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Maricaulis maris MCS10]
gi|122316269|sp|Q0AQH3.1|RLME_MARMM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|114340184|gb|ABI65464.1| 23S rRNA Um-2552 2'-O-methyltransferase [Maricaulis maris MCS10]
Length = 279
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 12/215 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV+KA+ E YR R+A+KLL++D + K L+PG++V+D G+APG
Sbjct: 77 RGRKSSSTRWLQRQLNDPYVKKAQMEGYRSRAAYKLLQLDERFKLLKPGMRVVDLGSAPG 136
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVA+K S V+ +D L + I GA +L K DFT D LV
Sbjct: 137 GWVQVALKSGASE----------VVGIDLLEMEAIAGATLLEK-DFTDADAPS-LVKAEM 184
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D V+SD+AP TG + DH I LA FAV KPG + K++ G + L
Sbjct: 185 GGAADAVVSDLAPWTTGHKTTDHLRIVALAELAAHFAVETLKPGGFFIAKVFQGGSDSDL 244
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V+ KP +SRS SAE F++ GFKG
Sbjct: 245 LNFLKANFEKVRHFKPDASRSESAETFVVAMGFKG 279
>gi|344344107|ref|ZP_08774972.1| Ribosomal RNA large subunit methyltransferase E [Marichromatium
purpuratum 984]
gi|343804391|gb|EGV22292.1| Ribosomal RNA large subunit methyltransferase E [Marichromatium
purpuratum 984]
Length = 206
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 124/212 (58%), Gaps = 9/212 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ SS WL R DP+V++A+++ YR R+A+KLLE+ + + L PG++V+D GAAPGS
Sbjct: 2 ARSKSSRRWLDRHVGDPFVKQAQQDGYRSRAAYKLLELQERDRLLAPGMRVVDLGAAPGS 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQVA +LV G V+++D LPI P+ G +L + DF + + ++L L+
Sbjct: 62 WSQVAARLVGKQGR--------VVALDLLPIDPLPGVEIL-QGDFREQAMLEQLEAALEA 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
LDVVLSDMAPN TG +D + L + A KPG +K++ G
Sbjct: 113 APLDVVLSDMAPNITGTAVVDQARVMYLVELALELAQARLKPGGALAVKVFQGSGFDDYL 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
++ + +S+V KP SSRS S E++L+ +GF
Sbjct: 173 RTLRQSFSRVVTRKPKSSRSASREVYLVAKGF 204
>gi|254464047|ref|ZP_05077458.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
bacterium Y4I]
gi|206684955|gb|EDZ45437.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
bacterium Y4I]
Length = 238
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 128/218 (58%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+A+K++E+D K +FL G +V+D G
Sbjct: 23 KTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMELDDKFRFLVNGARVVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W+QVAVK +N+ G + G ++ VD + P+ GA + DF D++
Sbjct: 83 APGGWAQVAVKRINALGEKPGKAVGRIIGVDLQEVEPLAGA-EFHQLDFMDEGADDQVKE 141
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L K DVV+SDMA ++G ++ DH I L FA + G + K+ G
Sbjct: 142 WL-GGKADVVMSDMAAASSGHKQTDHLRIISLCETAAYFAFDVLEEGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+L++ + + +++V +KPPSSRS S+E F++ GF+G
Sbjct: 201 GELQKLLKQKFTKVMNMKPPSSRSDSSEKFVVAMGFRG 238
>gi|74317150|ref|YP_314890.1| cell division protein FtsJ [Thiobacillus denitrificans ATCC 25259]
gi|123612003|sp|Q3SJR5.1|RLME_THIDA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|74056645|gb|AAZ97085.1| cell division protein FtsJ [Thiobacillus denitrificans ATCC 25259]
Length = 220
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 10/216 (4%)
Query: 9 LKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDC 68
+ + PK + S W+ D YV+KA+++ +R R+A+KLLEIDS+ L PG+ V+D
Sbjct: 1 MAQKPK-RTKSGSAWMHEHVTDAYVKKAQQDGFRSRAAYKLLEIDSRDHLLHPGMTVVDL 59
Query: 69 GAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRL 128
GAAPGSW QVAV+ + G VL++D LP+ P+ G L + DFT PD L
Sbjct: 60 GAAPGSWCQVAVQKMKRQGR--------VLAIDLLPVAPLPGVEAL-QGDFTAPDTLAWL 110
Query: 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188
L+ ++D+VLSDMAPN +G+ D +L + FAV + KP L+K++ G
Sbjct: 111 ENTLQAARVDLVLSDMAPNMSGVMLRDQARHYELCELALDFAVNWLKPDGAFLVKVFQGS 170
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ R + QV I KP +SR S+E++LLGR
Sbjct: 171 GFEDFRNAMRRAFDQVVIRKPDASRDRSSEVYLLGR 206
>gi|389683207|ref|ZP_10174539.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
chlororaphis O6]
gi|399004735|ref|ZP_10707344.1| 23S rRNA methylase [Pseudomonas sp. GM17]
gi|425897473|ref|ZP_18874064.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|388552720|gb|EIM15981.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
chlororaphis O6]
gi|397892621|gb|EJL09099.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|398128875|gb|EJM18255.1| 23S rRNA methylase [Pseudomonas sp. GM17]
Length = 209
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 125/214 (58%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F DP+V+ A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSHNWLKEHFNDPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G +D L + A +PG D LIKI+ G + +
Sbjct: 114 QVDLVISDMAPNMSGTPAVDMPRAMFLCELALDLAGRVLRPGGDFLIKIFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
++ + + +V + KP SSR S E +LLGRGF+G+
Sbjct: 174 NVRKMFDKVVMRKPSSSRDRSREQYLLGRGFRGR 207
>gi|17553474|ref|NP_499776.1| Protein F45G2.9 [Caenorhabditis elegans]
gi|9910849|sp|O62251.1|RRMJ2_CAEEL RecName: Full=Putative ribosomal RNA methyltransferase F45G2.9;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|3877251|emb|CAB07618.1| Protein F45G2.9 [Caenorhabditis elegans]
Length = 214
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 119/212 (56%), Gaps = 15/212 (7%)
Query: 21 HLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAV 80
H +++RQ D + KA++ NYR RSAFKL+EI+ K KFL+P V+D G APGSW QV V
Sbjct: 12 HKYIQRQSTDEFAVKAREHNYRARSAFKLIEINEKFKFLKPESTVIDIGCAPGSWLQVVV 71
Query: 81 KLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVV 140
+ K P G VD + PI GA +LS D T P ++ ++ L ++DVV
Sbjct: 72 Q---------KCPNGYASGVDLQNVLPIRGADILSLSDITDPAVKLKIREKLAHRQVDVV 122
Query: 141 LSDMAPNATGMREMDHDLITQLAIAVIRF-----AVTYSKPGADCLIKIWDGRNRPQLEE 195
LSDMAPN TG DH + +L +V R + K G L KIWDG R +
Sbjct: 123 LSDMAPNPTGDNATDHLRLIELCRSVFRLFSVENEIELVKNGV-YLCKIWDGSARAEFVR 181
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ +S VK +KP + R +SAEL+L R FK
Sbjct: 182 ELSDRFSTVKTVKPTACRDNSAELYLFCRNFK 213
>gi|398829629|ref|ZP_10587826.1| 23S rRNA methylase [Phyllobacterium sp. YR531]
gi|398216556|gb|EJN03102.1| 23S rRNA methylase [Phyllobacterium sp. YR531]
Length = 236
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYVQ++K + YR R+A+KL+EID + K L+ G +++D GAAPG WSQ+
Sbjct: 31 SSRRWLERHINDPYVQRSKADGYRSRAAYKLIEIDDRYKILKKGQRIIDLGAAPGGWSQI 90
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +V S +QP V+ +D L I P+ G V L + DF +L+ L + D
Sbjct: 91 AASIVGS---PDEQPT--VVGIDYLHIDPLPG-VTLLEMDFLDDTAPQKLMEALGGEP-D 143
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH T L FAV+ +PG L K + G ++ +
Sbjct: 144 IVMSDMAAPTTGHRRTDHIRTTHLCEVAADFAVSVLRPGGHFLTKTFQGGTENEVLVLLK 203
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SR+ S EL+LL R FKG+
Sbjct: 204 KHFKSVHHVKPPASRAESVELYLLARDFKGR 234
>gi|92118062|ref|YP_577791.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter hamburgensis
X14]
gi|122417455|sp|Q1QKB6.1|RLME_NITHX RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91800956|gb|ABE63331.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrobacter hamburgensis
X14]
Length = 228
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ +R R+A+KL+E+D K FL+PGL V+D GAAPG WSQV
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGWRSRAAYKLIEMDDKYHFLKPGLAVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + V + KG V+++D L + I G V ++ DF D ++L+ ++ + D
Sbjct: 82 AARRVG-----AVDGKGKVVAIDLLEMPEIVG-VTFARLDFLDADAPEKLIAMM-EGGAD 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA N TG R+ D I L + FA +PG + K++ L +
Sbjct: 135 IVLSDMAANTTGHRKTDQLRIIGLVESAAAFAADVLRPGGTFIAKVFQSGADADLLVQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R + V+ +KP SSR S+E +++ GF+G
Sbjct: 195 RDFRTVRHVKPASSRQDSSERYVMATGFRG 224
>gi|75676335|ref|YP_318756.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter winogradskyi
Nb-255]
gi|83305662|sp|Q3SQN7.1|RLME_NITWN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|74421205|gb|ABA05404.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrobacter winogradskyi
Nb-255]
Length = 230
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ +R R++FKL+E+D K +FL+PG+ V+D GAAPG WSQV
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGWRSRASFKLIEMDDKHRFLKPGMTVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + + KG V+++D L + I G V ++ DF D+L+ ++ D D
Sbjct: 82 AAKRVG-----AAEGKGRVIAIDLLEMPEIVG-VTFARLDFLDDSAPDKLLAMM-DGAAD 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA N TG R+ D I L + F +PG + K++ L +
Sbjct: 135 VVLSDMAANTTGHRKTDQLRIVGLVESAAAFTSDVLRPGGTFIAKVFQSGADAGLLVQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R + V+ +KP +SR S+E +++ GF+G
Sbjct: 195 RDFQTVRHVKPAASRQDSSERYVMATGFRG 224
>gi|398350360|ref|YP_006395824.1| ribosomal RNA large subunit methyltransferase E [Sinorhizobium
fredii USDA 257]
gi|390125686|gb|AFL49067.1| ribosomal RNA large subunit methyltransferase E [Sinorhizobium
fredii USDA 257]
Length = 245
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 127/227 (55%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
+G KL ++V KGK SS WL+R DPYVQ+A+ E YR R+AFKLLEID K K L
Sbjct: 11 SGRKLGQKVKKGKLKASSRRWLERHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILSGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ NS D + V ++D L + PI G L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTNSTDADPR-----VAAIDFLEMDPIPGVRFL-QMDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L + D+VLSDMA TG R+ DH L FAV G L
Sbjct: 125 QSPEKLKEAIGGTP-DLVLSDMAAPTTGHRQTDHLRTMHLCEVAAYFAVDVLAKGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLNMLKQNFRQVIHVKPASSRAESVEMFLLAKGFKGR 230
>gi|374704245|ref|ZP_09711115.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas sp. S9]
Length = 207
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 124/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+++ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ KG +++ D L + I V + DFT+ D+ +++ + ++
Sbjct: 63 SQVTSRVIGD--------KGTLIASDILEMDSIPD-VTFIQGDFTEDDVFAQILDAIGNN 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + + KPG D LIKI+ G +
Sbjct: 114 PVDLVISDMAPNMSGVRTADQARAMYLCELALDLSARVLKPGGDFLIKIFQGEGFDAYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V++ KP SSR S E +LLGRG++G
Sbjct: 174 QVREMFEKVQMRKPLSSRDRSREQYLLGRGYRGN 207
>gi|254475869|ref|ZP_05089255.1| ribosomal RNA large subunit methyltransferase J [Ruegeria sp. R11]
gi|214030112|gb|EEB70947.1| ribosomal RNA large subunit methyltransferase J [Ruegeria sp. R11]
Length = 257
Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 127/215 (59%), Gaps = 2/215 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV++A+ E YR R+A+K++E+D K +FL G +V+D G APG
Sbjct: 31 RGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDKFRFLVNGARVVDLGCAPG 90
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAVK +N+ G + G ++ VD + P+ GA + DF D++ L
Sbjct: 91 GWAQVAVKRINALGEKPGKSVGRIIGVDLQEVEPLAGA-EFHQLDFMSDGADDKVKEWL- 148
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DVV+SDMA ++G ++ DH I L FA + G + K+ G +L
Sbjct: 149 GGKADVVMSDMAAASSGHKQTDHLRIISLCETAAYFAFDVLEEGGTFVAKVLAGGAEGEL 208
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + + +++V +KPPSSRS S+E F++ GF+G
Sbjct: 209 QKLLKQKFTKVYHVKPPSSRSDSSEKFVVATGFRG 243
>gi|27379081|ref|NP_770610.1| cell division protein [Bradyrhizobium japonicum USDA 110]
gi|81737558|sp|Q89N72.1|RLME_BRAJA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|27352231|dbj|BAC49235.1| cell division protein [Bradyrhizobium japonicum USDA 110]
Length = 228
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 124/227 (54%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV KAK YR R+AFKLLEID K + L+
Sbjct: 5 TTGRLHVQVKTGGKRKLSSKLWLERQLNDPYVAKAKAAGYRSRAAFKLLEIDDKFRLLKH 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A K V S KG V+++D L + I G V ++ DF
Sbjct: 65 GMAVVDLGAAPGGWSQIAAKRVG-----SVDGKGKVVAIDLLEMPEIAG-VEFAQLDFMD 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
D +L +L DVV+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 NDAPAKLTAMLGGGA-DVVMSDMAANTTGHRKTDQLRIVGLIETAAAFACDVLKPGGTFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + L + R ++ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKTFQSGADADLLAQLKRDFATVRHVKPAASRQDSSERYVLATGFRG 224
>gi|259418917|ref|ZP_05742834.1| ribosomal RNA large subunit methyltransferase J [Silicibacter sp.
TrichCH4B]
gi|259345139|gb|EEW56993.1| ribosomal RNA large subunit methyltransferase J [Silicibacter sp.
TrichCH4B]
Length = 238
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 127/218 (58%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+AFK++E+D K +FL PG +V+D G
Sbjct: 23 KTARGRRLSSTRWLQRQLNDPYVKRAQAEGYRGRAAFKIMELDDKYRFLVPGARVVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W+QVAV +N+ G S + G + VD + P+ GA + DF D++
Sbjct: 83 APGGWAQVAVPRINALGEKSGKAIGRFIGVDLQEVEPLAGA-EFHQLDFMDEGADDQVKE 141
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L + DVV+SDMA +++G ++ DH I L FA + G + K+ G
Sbjct: 142 WL-GGQADVVMSDMAASSSGHKQTDHLRIMSLCETAAYFAFDVLEEGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+L++ + + + V +KPPSSR+ S+E F++ GF+G
Sbjct: 201 GELQKLLKQKFKSVANVKPPSSRADSSEKFVIATGFRG 238
>gi|296391579|ref|ZP_06881054.1| cell division protein FtsJ [Pseudomonas aeruginosa PAb1]
gi|416873714|ref|ZP_11917689.1| cell division protein FtsJ [Pseudomonas aeruginosa 152504]
gi|334844404|gb|EGM22979.1| cell division protein FtsJ [Pseudomonas aeruginosa 152504]
Length = 207
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 121/215 (56%), Gaps = 9/215 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ +S WLK F DPYV+ A+++ YR R+++KLLEI K + LRPG+ V+D GAAPG
Sbjct: 2 ARSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQV +++ G + +L +D +P V + DFT+ + R++ + D
Sbjct: 62 WSQVTSRVIGDRG---RLIASDILEMDSIP------DVTFIQGDFTEDAVFARILEAIGD 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G Q
Sbjct: 113 HPVDLVISDMAPNMSGVRAADQPRAMYLCELALDLARRVLRPGGDFLIKIFQGEGFDQYH 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V++ KP SSR S E +LL RGF+G+
Sbjct: 173 KQAREMFDKVQMRKPLSSRDRSREQYLLARGFRGE 207
>gi|239948521|ref|ZP_04700274.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
endosymbiont of Ixodes scapularis]
gi|241563460|ref|XP_002401713.1| cell division protein FtsJ, putative [Ixodes scapularis]
gi|215501905|gb|EEC11399.1| cell division protein FtsJ, putative [Ixodes scapularis]
gi|239922797|gb|EER22821.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 227
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 115/205 (56%), Gaps = 5/205 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS+ WLKRQ DPYV KA+ E +R R+A+KLLEI K K P +K++D GAAPG WSQV
Sbjct: 24 SSNNWLKRQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQV 83
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KL+ + ++S+D L I PI G K DF + D ++ ++ L D + D
Sbjct: 84 ASKLIKA---SDNSLNNKIISIDLLEIEPIAGVEFFQK-DFFEEDTEELIIQAL-DGRAD 138
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N G + DH L FA+ KP + KI+ G + +L +
Sbjct: 139 IVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAKNELLNKVK 198
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
R + VK KP SSRS S E++L+
Sbjct: 199 REFRTVKHFKPSSSRSESTEIYLVA 223
>gi|337279400|ref|YP_004618872.1| cell division protein ftsJ [Ramlibacter tataouinensis TTB310]
gi|334730477|gb|AEG92853.1| Cell division protein ftsJ [Ramlibacter tataouinensis TTB310]
Length = 220
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 117/206 (56%), Gaps = 1/206 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A KE YR R+A+KL EID + +RPG V+D G APG+WSQ +
Sbjct: 14 WLNDHVNDPYVKLAHKEGYRARAAYKLKEIDEALGLIRPGHLVVDLGCAPGAWSQYVRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G + Q G V+++D LP+ I+G L + DF +P++ RL +L K DVV+S
Sbjct: 74 LSPQGAAAGQLDGTVIALDLLPMEAIEGVTFL-QGDFREPEVLARLQAVLAGRKADVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D I+ L + FA + KP + K++ G QL + +
Sbjct: 133 DMAPNLSGVASADAARISHLVELAVEFASAHLKPEGALVAKVFHGSGYSQLVQLFKETFR 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFKG 228
VK LKP +SR S+E FL+G G K
Sbjct: 193 VVKPLKPKASRDKSSETFLVGIGPKA 218
>gi|425744890|ref|ZP_18862945.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-323]
gi|425490486|gb|EKU56786.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-323]
Length = 216
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S+G +L +D LP V + DF + ++ ++L+ IL ++D
Sbjct: 73 AGKLVGSNGLVIASD---ILEMDALP------DVTFLQGDFREEEVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 VVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGSGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLIGQGRK 212
>gi|58584834|ref|YP_198407.1| 23S rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia
malayi]
gi|75497746|sp|Q5GS59.1|RLME_WOLTR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|58419150|gb|AAW71165.1| 23S rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 216
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 121/219 (55%), Gaps = 21/219 (9%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ KG+ SS WL R D YVQK K++YR RSA+KL+EID+K K L+ G K++D GA
Sbjct: 9 KTAKGRKLSSTRWLHRHLNDQYVQKTNKDSYRSRSAYKLIEIDNKFKLLQAGQKIVDLGA 68
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPIYPIDGAVVLSKCDFTQPDIQ--DR 127
+PG WSQVA KG+ V+++D P+ I G + Q DI +
Sbjct: 69 SPGGWSQVA------------SQKGVKVVAIDIKPVNTISG------VKYIQYDINELET 110
Query: 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187
L KD K DV+LSDMAP + G++ +DH I L A + FA + G ++KI+ G
Sbjct: 111 LRERFKDQKFDVILSDMAPESCGLKSLDHIRIMLLCEAALNFAKHFLNYGGKFVVKIFQG 170
Query: 188 RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+ + + + VK KP SSRS S E++L+G GF
Sbjct: 171 ESDKDFYNELKKMFKIVKYFKPKSSRSESTEMYLVGLGF 209
>gi|261217293|ref|ZP_05931574.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
M13/05/1]
gi|261320164|ref|ZP_05959361.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
M644/93/1]
gi|260922382|gb|EEX88950.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
M13/05/1]
gi|261292854|gb|EEX96350.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
M644/93/1]
Length = 240
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 124/210 (59%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + P+ V+ +D L + P+ G V+L + DF + +L+ L DK D
Sbjct: 98 AARIV---GSTDENPQ--VVGIDYLHVDPLPG-VILLEMDFLDDEAPQKLMDAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH + V FAV+ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTTGHRRTDHLRTVHVCEVVADFAVSVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 211 QKFRSVHHVKPPASRAESVELYLLARDFKG 240
>gi|404318057|ref|ZP_10965990.1| 23S rRNA methyltransferase J [Ochrobactrum anthropi CTS-325]
Length = 240
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 122/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLQRHLNDPYVHKSRQDGYRSRAAYKLIEINDRYDLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G + P V+ +D L + P+ G VVL + DF + +L+ L DK D
Sbjct: 98 AAKIV---GSTDENPN--VVGIDYLHVDPLPG-VVLLEMDFLDDEAPQKLMDAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FA++ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAISVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 211 QKFRSVHHVKPPASRAESVELYLLARDFKG 240
>gi|294651175|ref|ZP_06728507.1| cell division protein [Acinetobacter haemolyticus ATCC 19194]
gi|292822928|gb|EFF81799.1| cell division protein [Acinetobacter haemolyticus ATCC 19194]
Length = 216
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S+G +L +D LP V + DF + ++ ++L+ IL ++D
Sbjct: 73 AGKLVGSNGLVIASD---ILEMDALP------DVTFLQGDFREEEVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 VVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGSGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLIGQGRK 212
>gi|15599946|ref|NP_253440.1| cell division protein FtsJ [Pseudomonas aeruginosa PAO1]
gi|116052899|ref|YP_793216.1| cell division protein FtsJ [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893847|ref|YP_002442716.1| cell division protein FtsJ [Pseudomonas aeruginosa LESB58]
gi|313109733|ref|ZP_07795673.1| cell division protein FtsJ [Pseudomonas aeruginosa 39016]
gi|355642733|ref|ZP_09052867.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas sp.
2_1_26]
gi|386060920|ref|YP_005977442.1| cell division protein FtsJ [Pseudomonas aeruginosa M18]
gi|386063750|ref|YP_005979054.1| cell division protein [Pseudomonas aeruginosa NCGM2.S1]
gi|416856863|ref|ZP_11912381.1| cell division protein FtsJ [Pseudomonas aeruginosa 138244]
gi|418586250|ref|ZP_13150294.1| cell division protein FtsJ [Pseudomonas aeruginosa MPAO1/P1]
gi|418592932|ref|ZP_13156792.1| cell division protein FtsJ [Pseudomonas aeruginosa MPAO1/P2]
gi|421156273|ref|ZP_15615722.1| cell division protein FtsJ [Pseudomonas aeruginosa ATCC 14886]
gi|421170539|ref|ZP_15628482.1| cell division protein FtsJ [Pseudomonas aeruginosa ATCC 700888]
gi|421177007|ref|ZP_15634664.1| cell division protein FtsJ [Pseudomonas aeruginosa CI27]
gi|421182826|ref|ZP_15640296.1| cell division protein FtsJ [Pseudomonas aeruginosa E2]
gi|421519313|ref|ZP_15965984.1| 23S rRNA methyltransferase J [Pseudomonas aeruginosa PAO579]
gi|424944461|ref|ZP_18360224.1| cell division protein FtsJ [Pseudomonas aeruginosa NCMG1179]
gi|12230965|sp|P95454.2|RLME_PSEAE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|122257090|sp|Q02FS0.1|RLME_PSEAB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705300|sp|B7V1G4.1|RLME_PSEA8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|9951015|gb|AAG08138.1|AE004889_1 cell division protein FtsJ [Pseudomonas aeruginosa PAO1]
gi|115588120|gb|ABJ14135.1| cell division protein FtsJ [Pseudomonas aeruginosa UCBPP-PA14]
gi|218774075|emb|CAW29891.1| cell division protein FtsJ [Pseudomonas aeruginosa LESB58]
gi|310882175|gb|EFQ40769.1| cell division protein FtsJ [Pseudomonas aeruginosa 39016]
gi|334841284|gb|EGM19917.1| cell division protein FtsJ [Pseudomonas aeruginosa 138244]
gi|346060907|dbj|GAA20790.1| cell division protein FtsJ [Pseudomonas aeruginosa NCMG1179]
gi|347307226|gb|AEO77340.1| cell division protein FtsJ [Pseudomonas aeruginosa M18]
gi|348032309|dbj|BAK87669.1| cell division protein [Pseudomonas aeruginosa NCGM2.S1]
gi|354830171|gb|EHF14226.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas sp.
2_1_26]
gi|375043390|gb|EHS36016.1| cell division protein FtsJ [Pseudomonas aeruginosa MPAO1/P1]
gi|375048281|gb|EHS40808.1| cell division protein FtsJ [Pseudomonas aeruginosa MPAO1/P2]
gi|404345232|gb|EJZ71584.1| 23S rRNA methyltransferase J [Pseudomonas aeruginosa PAO579]
gi|404519148|gb|EKA29922.1| cell division protein FtsJ [Pseudomonas aeruginosa ATCC 14886]
gi|404523052|gb|EKA33500.1| cell division protein FtsJ [Pseudomonas aeruginosa ATCC 700888]
gi|404530095|gb|EKA40108.1| cell division protein FtsJ [Pseudomonas aeruginosa CI27]
gi|404541268|gb|EKA50633.1| cell division protein FtsJ [Pseudomonas aeruginosa E2]
gi|453043953|gb|EME91680.1| 23S rRNA methyltransferase J [Pseudomonas aeruginosa PA21_ST175]
Length = 207
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 121/214 (56%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+++ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ G + +L +D +P V + DFT+ + R++ + D
Sbjct: 63 SQVTSRVIGDRG---RLIASDILEMDSIP------DVTFIQGDFTEDAVFARILEAIGDH 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G Q +
Sbjct: 114 PVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +V++ KP SSR S E +LL RGF+G+
Sbjct: 174 QAREMFDKVQMRKPLSSRDRSREQYLLARGFRGE 207
>gi|395498839|ref|ZP_10430418.1| 23S rRNA methyltransferase J [Pseudomonas sp. PAMC 25886]
gi|395797971|ref|ZP_10477258.1| 23S rRNA methyltransferase J [Pseudomonas sp. Ag1]
gi|421140203|ref|ZP_15600223.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens BBc6R8]
gi|395337963|gb|EJF69817.1| 23S rRNA methyltransferase J [Pseudomonas sp. Ag1]
gi|404508595|gb|EKA22545.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens BBc6R8]
Length = 216
Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 124/213 (58%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+ F DPYV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQEHFNDPYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V DFTQ ++ +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFVHGDFTQDEVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D L+K++ G + +
Sbjct: 114 QVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+I + + +V+ KP SSR S E +LLGRGF+G
Sbjct: 174 NIRKLFDKVQTRKPDSSRDRSREQYLLGRGFRG 206
>gi|189044091|sp|A5VUZ8.2|RLME_BRUO2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
Length = 240
Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + P+ V+ +D L + P+ G V+L + DF + +L+ L DK D
Sbjct: 98 AARIV---GSTDENPQ--VVGIDYLHVDPLPG-VILLEMDFLDDEAPQKLMDAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FAV+ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 211 QKFRSVHHVKPPASRAESVELYLLARDFKG 240
>gi|265985356|ref|ZP_06098091.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
83/13]
gi|306837434|ref|ZP_07470310.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. NF
2653]
gi|264663948|gb|EEZ34209.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
83/13]
gi|306407477|gb|EFM63680.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. NF
2653]
Length = 240
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + P+ V+ +D L + P+ G V+L + DF + +L+ L DK D
Sbjct: 98 AARIV---GSTDENPQ--VVGIDYLHVDPLPG-VILLEMDFLDDEAPQKLMDAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FAV+ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 211 QRFRSVHHVKPPASRAESVELYLLARDFKG 240
>gi|153011133|ref|YP_001372347.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ochrobactrum anthropi
ATCC 49188]
gi|189040317|sp|A6X5L4.1|RLME_OCHA4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|151563021|gb|ABS16518.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ochrobactrum anthropi
ATCC 49188]
Length = 240
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 122/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLQRHLNDPYVHKSRQDGYRSRAAYKLIEINDRYDLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G + P V+ +D L + P+ G VVL + DF + +L+ L DK D
Sbjct: 98 AAKIV---GSTDENPH--VVGIDYLHVDPLPG-VVLLEMDFLDDEAPQKLMDAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FA++ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAISVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 211 QKFRSVHHVKPPASRAESVELYLLARDFKG 240
>gi|254238512|ref|ZP_04931835.1| cell division protein FtsJ [Pseudomonas aeruginosa C3719]
gi|254244346|ref|ZP_04937668.1| cell division protein FtsJ [Pseudomonas aeruginosa 2192]
gi|392986424|ref|YP_006485011.1| cell division protein FtsJ [Pseudomonas aeruginosa DK2]
gi|419751526|ref|ZP_14277937.1| cell division protein FtsJ [Pseudomonas aeruginosa PADK2_CF510]
gi|420141946|ref|ZP_14649580.1| cell division protein FtsJ [Pseudomonas aeruginosa CIG1]
gi|421163336|ref|ZP_15622057.1| cell division protein FtsJ [Pseudomonas aeruginosa ATCC 25324]
gi|451988348|ref|ZP_21936482.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Pseudomonas aeruginosa 18A]
gi|126170443|gb|EAZ55954.1| cell division protein FtsJ [Pseudomonas aeruginosa C3719]
gi|126197724|gb|EAZ61787.1| cell division protein FtsJ [Pseudomonas aeruginosa 2192]
gi|384401988|gb|EIE48340.1| cell division protein FtsJ [Pseudomonas aeruginosa PADK2_CF510]
gi|392321929|gb|AFM67309.1| cell division protein FtsJ [Pseudomonas aeruginosa DK2]
gi|403245253|gb|EJY59075.1| cell division protein FtsJ [Pseudomonas aeruginosa CIG1]
gi|404529147|gb|EKA39198.1| cell division protein FtsJ [Pseudomonas aeruginosa ATCC 25324]
gi|451754001|emb|CCQ89005.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Pseudomonas aeruginosa 18A]
Length = 207
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 121/214 (56%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+++ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ G + +L +D +P V + DFT+ + R++ + D
Sbjct: 63 SQVTSRVIGDRG---RLIASDILEMDSIP------DVTFIQGDFTEDAVFARILEAIGDH 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G Q +
Sbjct: 114 PVDLVISDMAPNMSGVRASDQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +V++ KP SSR S E +LL RGF+G+
Sbjct: 174 QAREMFDKVQMRKPLSSRDRSREQYLLARGFRGE 207
>gi|148557611|ref|YP_001265193.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas wittichii
RW1]
gi|189040343|sp|A5VFI9.1|RLME_SPHWW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|148502801|gb|ABQ71055.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas wittichii
RW1]
Length = 229
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 122/216 (56%), Gaps = 11/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS W++RQ DPYV+KA+ E YR R+A+KL+E+D + FLR +V+D G APG
Sbjct: 16 KGRSASSIKWIQRQLNDPYVRKAQAEGYRSRAAYKLIELDERFHFLRGAKRVIDLGIAPG 75
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV ++ P+ ++ +D LP PIDGA++L + DF + +L L
Sbjct: 76 GWTQVVRRVC---------PQAAIVGIDLLPTDPIDGAIIL-QMDFMSDEAPAQLAEAL- 124
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+VLSDMA N G ++ DH L A FA +PG + K+ G L
Sbjct: 125 GGPADIVLSDMAANTVGHQQTDHLRTMALVEAGCLFASEVLRPGGTYVAKVLAGGADHGL 184
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ VK KPP+SR S+E +++ +GFKG+
Sbjct: 185 VAELKRLFTTVKHAKPPASRKDSSEWYVIAQGFKGR 220
>gi|399992792|ref|YP_006573032.1| ribosomal RNA large subunit methyltransferase J [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398657347|gb|AFO91313.1| ribosomal RNA large subunit methyltransferase J [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 251
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 128/218 (58%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+A+K++E+D K +FL G +V+D G
Sbjct: 28 KTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDKFRFLINGARVVDLGC 87
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W+QVAVK +N+ G + G ++ VD + P+ GA + DF D++
Sbjct: 88 APGGWAQVAVKRINALGEKPGKAVGRIIGVDLQEVEPLAGA-EFHQLDFMDDGADDKVKE 146
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L K DVV+SDMA ++G ++ DH I L FA + G + K+ G
Sbjct: 147 WL-GGKADVVMSDMAAASSGHKQTDHLRIISLCETAAYFAFDVLEDGGTFVAKVLAGGAE 205
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+L++ + + +++V +KPPSSRS S+E F++ GF+G
Sbjct: 206 GELQKLLKQKFTKVYHVKPPSSRSDSSEKFVVATGFRG 243
>gi|400754470|ref|YP_006562838.1| ribosomal RNA large subunit methyltransferase J [Phaeobacter
gallaeciensis 2.10]
gi|398653623|gb|AFO87593.1| ribosomal RNA large subunit methyltransferase J [Phaeobacter
gallaeciensis 2.10]
Length = 251
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 128/218 (58%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+A+K++E+D K +FL G +V+D G
Sbjct: 28 KTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAYKIMEVDDKFRFLINGARVVDLGC 87
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W+QVAVK +N+ G + G ++ VD + P+ GA + DF D++
Sbjct: 88 APGGWAQVAVKRINALGEKPGKAVGRIIGVDLQEVEPLAGA-EFHQLDFMDDGADDKVKE 146
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L K DVV+SDMA ++G ++ DH I L FA + G + K+ G
Sbjct: 147 WL-GGKADVVMSDMAAASSGHKQTDHLRIISLCETAAYFAFDVLEDGGTFVAKVLAGGAE 205
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+L++ + + +++V +KPPSSRS S+E F++ GF+G
Sbjct: 206 GELQKLLKQKFTKVYHVKPPSSRSDSSEKFVVATGFRG 243
>gi|406039651|ref|ZP_11047006.1| 23S rRNA methyltransferase J [Acinetobacter ursingii DSM 16037 =
CIP 107286]
Length = 216
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 124/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V++A+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKRAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D L + + L + DF + ++ ++L+ IL +D
Sbjct: 73 AGKLVGS--------KGLVIASDILAMDALPDVTFL-QGDFREEEVFEKLLNILNGRTVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K +KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTVKPEASRARSKEVFLIGQGRK 212
>gi|254460971|ref|ZP_05074387.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
bacterium HTCC2083]
gi|206677560|gb|EDZ42047.1| ribosomal RNA large subunit methyltransferase J [Rhodobacteraceae
bacterium HTCC2083]
Length = 244
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 125/216 (57%), Gaps = 2/216 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS LWL+RQ DPYV++A+ E YR R+AFK++E+D K +FL PG +V+D G APG
Sbjct: 26 RGRRMSSTLWLQRQLNDPYVKRAQAEGYRGRAAFKIMELDDKYRFLVPGARVVDLGCAPG 85
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV +N+ G + G +L +D + + GA DF D++ L
Sbjct: 86 GWCQVAVPRINALGDRRGKSVGTLLGIDIQEVETMAGA-EFHVLDFLDEGADDKVKEWLG 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVV+SDMA +++G ++ DH I L FA G + K+ G L
Sbjct: 145 GEA-DVVMSDMAASSSGHKQTDHLRIMHLCETAAYFAFDVLAEGGTFVAKVLAGGAEGDL 203
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
++ + + +++V +KPPSSRS S+E F++ GFKG+
Sbjct: 204 QKLLKQNFTKVAHMKPPSSRSDSSEKFVVATGFKGR 239
>gi|150395598|ref|YP_001326065.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium medicae
WSM419]
gi|189040341|sp|A6U6F0.1|RLME_SINMW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|150027113|gb|ABR59230.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sinorhizobium medicae
WSM419]
Length = 245
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 126/227 (55%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
+G KL ++V KGK SS W++R DPYVQ+A+ E YR R+AFKLLEID K K L
Sbjct: 11 SGRKLGQKVKKGKLKASSRRWIERHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILAGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ NS D + V ++D L + I G L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTNSTDTDPR-----VAAIDFLEMDAIPGVSFL-QMDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L + D+VLSDMA TG R+ DH L FAV G L
Sbjct: 125 QAPEKLKEAI-GGAPDIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAKGFKGR 230
>gi|408786228|ref|ZP_11197966.1| 23S rRNA methyltransferase J [Rhizobium lupini HPC(L)]
gi|408487852|gb|EKJ96168.1| 23S rRNA methyltransferase J [Rhizobium lupini HPC(L)]
Length = 246
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 121/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYVQ+AK E YR R+AFKLLEI+ K + L+ +++D GAAPGSWSQ+
Sbjct: 27 SSRRWLERHINDPYVQRAKLEGYRARAAFKLLEINDKHQILKGATRIIDLGAAPGSWSQI 86
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+ +S D + V ++D L I PI G +L + DF P ++L+ + D
Sbjct: 87 AAKVTDSTEDDIR-----VAAIDFLEIDPIPGVKIL-QLDFLDPSAPEKLMEAVGGTP-D 139
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG ++ DH L FAV G L K + G QL + +
Sbjct: 140 LVLSDMAAPTTGHQKTDHIRTMHLCEVAADFAVQVLAEGGHFLAKTFQGGTEKQLLDMLK 199
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + QV +KP SSRS S E+FLL + FKG+
Sbjct: 200 KNFKQVLHIKPASSRSESVEMFLLAKHFKGR 230
>gi|299133659|ref|ZP_07026853.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Afipia sp. 1NLS2]
gi|298591495|gb|EFI51696.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Afipia sp. 1NLS2]
Length = 226
Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 121/210 (57%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ YR R+A+KL E+D K FL+ G V+D GAAPG WSQ+
Sbjct: 22 SSKLWLERQLNDPYVMQAKRDGYRSRAAYKLREMDDKYHFLKQGQAVVDLGAAPGGWSQI 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V ++ KG V+++D L + I G V ++ DF D ++L +L D
Sbjct: 82 AAKRVG-----AEAGKGKVIAIDLLEMGEIPG-VTFAQLDFLADDAPEKLRAMLGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N TG R+ D I L + FA PG L K++ L+ +
Sbjct: 135 IVMSDMAANTTGHRKTDQLRIVGLVESAAAFAAEVLNPGGVFLAKVFQSGADATLQNELK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ V+ +KP +SR S+E ++L GF+G
Sbjct: 195 RNFATVRHVKPAASRQDSSERYVLAMGFRG 224
>gi|17988942|ref|NP_541575.1| 23S ribsomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|161620740|ref|YP_001594626.1| ribosomal RNA large subunit methyltransferase J [Brucella canis
ATCC 23365]
gi|163844815|ref|YP_001622470.1| hypothetical protein BSUIS_B0670 [Brucella suis ATCC 23445]
gi|189022722|ref|YP_001932463.1| 23S ribsomal RNA methyltransferase [Brucella abortus S19]
gi|225629167|ref|ZP_03787200.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti str.
Cudo]
gi|225686460|ref|YP_002734432.1| Ribosomal RNA large subunit methyltransferase J [Brucella
melitensis ATCC 23457]
gi|237817019|ref|ZP_04596011.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
str. 2308 A]
gi|256262400|ref|ZP_05464932.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 2 str. 63/9]
gi|260544705|ref|ZP_05820526.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
NCTC 8038]
gi|260564762|ref|ZP_05835247.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 1 str. 16M]
gi|260568039|ref|ZP_05838508.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
4 str. 40]
gi|260756558|ref|ZP_05868906.1| 23S rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260759989|ref|ZP_05872337.1| 23S rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260763229|ref|ZP_05875561.1| 23S rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260882376|ref|ZP_05893990.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
bv. 9 str. C68]
gi|261216133|ref|ZP_05930414.1| 23S rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|261220515|ref|ZP_05934796.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
B1/94]
gi|261318645|ref|ZP_05957842.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis B2/94]
gi|261750386|ref|ZP_05994095.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
5 str. 513]
gi|261753643|ref|ZP_05997352.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
3 str. 686]
gi|261756885|ref|ZP_06000594.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
F5/99]
gi|265986444|ref|ZP_06099001.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis M292/94/1]
gi|265989986|ref|ZP_06102543.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 1 str. Rev.1]
gi|265992903|ref|ZP_06105460.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 3 str. Ether]
gi|265996137|ref|ZP_06108694.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
M490/95/1]
gi|294853531|ref|ZP_06794203.1| cell division protein methyltransferase FtsJ [Brucella sp. NVSL
07-0026]
gi|297249509|ref|ZP_06933210.1| cell division protein methyltransferase FtsJ [Brucella abortus bv.
5 str. B3196]
gi|306840657|ref|ZP_07473408.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. BO2]
gi|306845790|ref|ZP_07478358.1| Ribosomal RNA large subunit methyltransferase J [Brucella inopinata
BO1]
gi|376271106|ref|YP_005114151.1| 23S ribsomal RNA methyltransferase [Brucella abortus A13334]
gi|376276655|ref|YP_005152716.1| 23S ribsomal RNA methyltransferase [Brucella canis HSK A52141]
gi|384213189|ref|YP_005602272.1| 23S ribsomal RNA methyltransferase [Brucella melitensis M5-90]
gi|384410291|ref|YP_005598911.1| 23S ribsomal RNA methyltransferase [Brucella melitensis M28]
gi|384446809|ref|YP_005661027.1| Ribosomal RNA large subunit methyltransferase J [Brucella
melitensis NI]
gi|423168636|ref|ZP_17155338.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI435a]
gi|423171931|ref|ZP_17158605.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI474]
gi|423174338|ref|ZP_17161008.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI486]
gi|423176215|ref|ZP_17162881.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI488]
gi|423181360|ref|ZP_17168000.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI010]
gi|423184493|ref|ZP_17171129.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI016]
gi|423187643|ref|ZP_17174256.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI021]
gi|423190064|ref|ZP_17176673.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI259]
gi|81850447|sp|Q8YCD5.1|RLME_BRUME RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83305655|sp|Q578H4.2|RLME_BRUAB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83305656|sp|Q8FVY1.2|RLME_BRUSU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|143459528|sp|Q2YKU4.2|RLME_BRUA2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189044087|sp|A9MBW8.1|RLME_BRUC2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189044088|sp|A9WYY2.1|RLME_BRUSI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703283|sp|B2SAY0.1|RLME_BRUA1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|254809548|sp|C0RLJ5.1|RLME_BRUMB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|17984775|gb|AAL53839.1| 23S ribsomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|161337551|gb|ABX63855.1| Ribosomal RNA large subunit methyltransferase J [Brucella canis
ATCC 23365]
gi|163675538|gb|ABY39648.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|189021296|gb|ACD74017.1| 23S ribsomal RNA methyltransferase [Brucella abortus S19]
gi|225615663|gb|EEH12712.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti str.
Cudo]
gi|225642565|gb|ACO02478.1| Ribosomal RNA large subunit methyltransferase J [Brucella
melitensis ATCC 23457]
gi|237787832|gb|EEP62048.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
str. 2308 A]
gi|260097976|gb|EEW81850.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
NCTC 8038]
gi|260152405|gb|EEW87498.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 1 str. 16M]
gi|260154704|gb|EEW89785.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
4 str. 40]
gi|260670307|gb|EEX57247.1| 23S rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260673650|gb|EEX60471.1| 23S rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260676666|gb|EEX63487.1| 23S rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260871904|gb|EEX78973.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
bv. 9 str. C68]
gi|260917740|gb|EEX84601.1| 23S rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|260919099|gb|EEX85752.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
B1/94]
gi|261297868|gb|EEY01365.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis B2/94]
gi|261736869|gb|EEY24865.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
F5/99]
gi|261740139|gb|EEY28065.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
5 str. 513]
gi|261743396|gb|EEY31322.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
3 str. 686]
gi|262550434|gb|EEZ06595.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
M490/95/1]
gi|262763773|gb|EEZ09805.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 3 str. Ether]
gi|263000655|gb|EEZ13345.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 1 str. Rev.1]
gi|263092133|gb|EEZ16430.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 2 str. 63/9]
gi|264658641|gb|EEZ28902.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis M292/94/1]
gi|294819186|gb|EFG36186.1| cell division protein methyltransferase FtsJ [Brucella sp. NVSL
07-0026]
gi|297173378|gb|EFH32742.1| cell division protein methyltransferase FtsJ [Brucella abortus bv.
5 str. B3196]
gi|306273682|gb|EFM55520.1| Ribosomal RNA large subunit methyltransferase J [Brucella inopinata
BO1]
gi|306289350|gb|EFM60589.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. BO2]
gi|326410838|gb|ADZ67902.1| 23S ribsomal RNA methyltransferase [Brucella melitensis M28]
gi|326554129|gb|ADZ88768.1| 23S ribsomal RNA methyltransferase [Brucella melitensis M5-90]
gi|349744806|gb|AEQ10348.1| Ribosomal RNA large subunit methyltransferase J [Brucella
melitensis NI]
gi|363402278|gb|AEW19247.1| 23S ribsomal RNA methyltransferase [Brucella abortus A13334]
gi|363405029|gb|AEW15323.1| 23S ribsomal RNA methyltransferase [Brucella canis HSK A52141]
gi|374536353|gb|EHR07873.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI474]
gi|374537842|gb|EHR09352.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI435a]
gi|374540339|gb|EHR11841.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI486]
gi|374545950|gb|EHR17410.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI010]
gi|374546793|gb|EHR18252.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI016]
gi|374554817|gb|EHR26227.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI488]
gi|374555447|gb|EHR26856.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI021]
gi|374556104|gb|EHR27509.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI259]
Length = 240
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + P+ V+ +D L + P+ G V+L + DF + +L+ L DK D
Sbjct: 98 AARIV---GSTDENPQ--VVGIDYLHVDPLPG-VILLEMDFLDDEAPQKLMDAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FAV+ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 211 QKFRSVHHVKPPASRAESVELYLLARDFKG 240
>gi|440722199|ref|ZP_20902582.1| 23S rRNA methyltransferase J [Pseudomonas syringae BRIP34876]
gi|440725911|ref|ZP_20906171.1| 23S rRNA methyltransferase J [Pseudomonas syringae BRIP34881]
gi|443642355|ref|ZP_21126205.1| 23S rRNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
syringae B64]
gi|440361728|gb|ELP98945.1| 23S rRNA methyltransferase J [Pseudomonas syringae BRIP34876]
gi|440367798|gb|ELQ04853.1| 23S rRNA methyltransferase J [Pseudomonas syringae BRIP34881]
gi|443282372|gb|ELS41377.1| 23S rRNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
syringae B64]
Length = 216
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F D YV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ I ++++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDTILEQILEAVGNT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIK++ G +
Sbjct: 114 QVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 DIRKLFDKVQMRKPSSSRDRSREQYLLARGFRG 206
>gi|424909508|ref|ZP_18332885.1| 23S rRNA methylase [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392845539|gb|EJA98061.1| 23S rRNA methylase [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 246
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 121/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYVQ+AK E YR R+AFKLLEI+ K + L+ +++D GAAPGSWSQ+
Sbjct: 27 SSRRWLERHINDPYVQRAKLEGYRARAAFKLLEINDKHQILKGATRIIDLGAAPGSWSQI 86
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+ +S D + V ++D L I PI G +L + DF P ++L+ + D
Sbjct: 87 AAKVTDSTEDDIR-----VAAIDFLEIDPIPGVKIL-QLDFLDPSAPEKLMEAVGGTP-D 139
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG ++ DH L FAV G L K + G QL + +
Sbjct: 140 LVLSDMAAPTTGHQKTDHIRTMHLCEVAADFAVQVLAEGGHFLAKTFQGGTEKQLLDMLK 199
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + QV +KP SSRS S E+FLL + FKG+
Sbjct: 200 KNFKQVLHIKPASSRSESVEMFLLAKHFKGR 230
>gi|429210168|ref|ZP_19201335.1| ribosomal RNA large subunit methyltransferase E [Pseudomonas sp.
M1]
gi|428158942|gb|EKX05488.1| ribosomal RNA large subunit methyltransferase E [Pseudomonas sp.
M1]
Length = 207
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 9/214 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ +SH WLK F DPYV+ A+++ YR R+++KLLEI K + LRPG+ V+D GAAPG
Sbjct: 2 ARSKTSHRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQV +++ KG +++ D LP+ I V + DFT+ ++ RL+ + +
Sbjct: 62 WSQVTSRVIGD--------KGTLIASDILPMDSIPD-VTFIQGDFTEDEVFARLLEAIGE 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+ +D+V+SDMAPN +G+ +D L + +PG D LIKI+ G
Sbjct: 113 NPVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLCARVLRPGGDFLIKIFQGEGFDTYL 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+++ + +V++ KP SSR S E +LL RGF+G
Sbjct: 173 KTVRENFEKVQMRKPLSSRDRSREQYLLARGFRG 206
>gi|393909494|gb|EFO23047.2| ribosomal RNA large subunit methyltransferase J [Loa loa]
Length = 238
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 122/215 (56%), Gaps = 9/215 (4%)
Query: 14 KGKDHSSHL-WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAP 72
K K ++ L +L++Q +D + +KA++ +YR RSA+KLLEI+ K K + PG+ V+D GAAP
Sbjct: 23 KSKKSTATLKYLRKQCSDEFSRKAREHSYRARSAYKLLEINEKYKIIEPGMVVVDVGAAP 82
Query: 73 GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL 132
GSW QV +V + Y VL +D PI P+ G L D T + + +L
Sbjct: 83 GSWCQVVADIVQPNVYGD----AFVLGIDLQPIMPVSGVNFLDLSDITAQKTHENIKQLL 138
Query: 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS----KPGADCLIKIWDGR 188
+DVV+SDMAPN TG R +DH+ I L V+ +V S L KIWDG
Sbjct: 139 NGRSVDVVISDMAPNPTGDRGIDHERILSLCGIVLELSVKKSVIPLVRNGTFLCKIWDGP 198
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
R + E + R + +V +KP +SR HSAE++LL
Sbjct: 199 RREEFIERLKREFGKVYTVKPKASRDHSAEIYLLA 233
>gi|395787068|ref|ZP_10466669.1| ribosomal RNA large subunit methyltransferase E [Bartonella
birtlesii LL-WM9]
gi|395411492|gb|EJF78013.1| ribosomal RNA large subunit methyltransferase E [Bartonella
birtlesii LL-WM9]
Length = 242
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + KFL+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
++V S K+P ++ +D L + + G V+L + DF + +LV L +K D
Sbjct: 94 VSRIVGS---SEKKPS--IVGIDYLHVDLLPGVVML-EMDFLHAEAPQKLVAAL-GEKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L FA++ KPG L K + G L +
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTIYLCEVAADFALSVLKPGGHFLAKAFQGGAENNLLTILK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SRS S EL+LL GFKGK
Sbjct: 207 QNFKTVHHVKPPASRSESVELYLLALGFKGK 237
>gi|71734802|ref|YP_276319.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|257482269|ref|ZP_05636310.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|289624594|ref|ZP_06457548.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. aesculi str. NCPPB 3681]
gi|289646953|ref|ZP_06478296.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. aesculi str. 2250]
gi|416018564|ref|ZP_11565492.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. glycinea str. B076]
gi|416025176|ref|ZP_11568957.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. glycinea str. race 4]
gi|422583406|ref|ZP_16658531.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|422596751|ref|ZP_16671030.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|83305664|sp|Q48E69.1|RLME_PSE14 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|71555355|gb|AAZ34566.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|320322536|gb|EFW78629.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. glycinea str. B076]
gi|320329995|gb|EFW85982.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330868238|gb|EGH02947.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330987047|gb|EGH85150.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 216
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F D YV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ I ++++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDKILEQILEAVGNT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIK++ G +
Sbjct: 114 QVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 DIRKLFDKVQMRKPSSSRDRSREQYLLARGFRG 206
>gi|148558273|ref|YP_001257653.1| putative ribosomal RNA large subunit methyltransferase J [Brucella
ovis ATCC 25840]
gi|148369558|gb|ABQ62430.1| putative ribosomal RNA large subunit methyltransferase J [Brucella
ovis ATCC 25840]
Length = 215
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 13 SSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + P+ V+ +D L + P+ G V+L + DF + +L+ L DK D
Sbjct: 73 AARIV---GSTDENPQ--VVGIDYLHVDPLPG-VILLEMDFLDDEAPQKLMDAL-GDKPD 125
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FAV+ KPG L K + G +L +
Sbjct: 126 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLALLK 185
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 186 QKFRSVHHVKPPASRAESVELYLLARDFKG 215
>gi|99081023|ref|YP_613177.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ruegeria sp. TM1040]
gi|123077672|sp|Q1GHF1.1|RLME_SILST RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|99037303|gb|ABF63915.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ruegeria sp. TM1040]
Length = 238
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 127/218 (58%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+AFK++E+D K +FL PG +V+D G
Sbjct: 23 KTARGRRLSSTRWLQRQLNDPYVKRAQAEGYRGRAAFKIMELDDKYRFLVPGARVVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W+QVAV +N+ G S + G + +D + P+ GA + DF D++
Sbjct: 83 APGGWAQVAVPRINALGEKSGKAIGRFIGIDLQEVEPLAGA-EFHQLDFMDEGADDQVKE 141
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L + DVV+SDMA +++G ++ DH I L FA + G + K+ G
Sbjct: 142 WL-GGQADVVMSDMAASSSGHKQTDHLRIMSLCETAAYFAFDVLEEGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+L++ + + + V +KPPSSR+ S+E F++ GF+G
Sbjct: 201 GELQKLLKQKFKSVANVKPPSSRADSSEKFVVATGFRG 238
>gi|23500428|ref|NP_699868.1| ribosomal RNA large subunit methyltransferase J [Brucella suis
1330]
gi|62317468|ref|YP_223321.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
bv. 1 str. 9-941]
gi|83269449|ref|YP_418740.1| cell division protein FtsJ [Brucella melitensis biovar Abortus
2308]
gi|256015456|ref|YP_003105465.1| ribosomal RNA large subunit methyltransferase J [Brucella microti
CCM 4915]
gi|340792469|ref|YP_004757933.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis B2/94]
gi|376278648|ref|YP_005108681.1| ribosomal RNA large subunit methyltransferase J, putative [Brucella
suis VBI22]
gi|384223209|ref|YP_005614374.1| ribosomal RNA large subunit methyltransferase J [Brucella suis
1330]
gi|23464051|gb|AAN33873.1| ribosomal RNA large subunit methyltransferase J, putative [Brucella
suis 1330]
gi|62197661|gb|AAX75960.1| hypothetical ribosomal RNA large subunit methyltransferase J
[Brucella abortus bv. 1 str. 9-941]
gi|82939723|emb|CAJ12720.1| Cell division protein FtsJ [Brucella melitensis biovar Abortus
2308]
gi|255998116|gb|ACU49803.1| ribosomal RNA large subunit methyltransferase J [Brucella microti
CCM 4915]
gi|340560928|gb|AEK56165.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis B2/94]
gi|343384657|gb|AEM20148.1| ribosomal RNA large subunit methyltransferase J, putative [Brucella
suis 1330]
gi|358260086|gb|AEU07819.1| ribosomal RNA large subunit methyltransferase J, putative [Brucella
suis VBI22]
Length = 215
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 13 SSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + P+ V+ +D L + P+ G V+L + DF + +L+ L DK D
Sbjct: 73 AARIV---GSTDENPQ--VVGIDYLHVDPLPG-VILLEMDFLDDEAPQKLMDAL-GDKPD 125
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FAV+ KPG L K + G +L +
Sbjct: 126 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLALLK 185
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 186 QKFRSVHHVKPPASRAESVELYLLARDFKG 215
>gi|85702831|ref|ZP_01033935.1| ribosomal RNA large subunit methyltransferase J [Roseovarius sp.
217]
gi|85671759|gb|EAQ26616.1| ribosomal RNA large subunit methyltransferase J [Roseovarius sp.
217]
Length = 238
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 126/218 (57%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+AFK++E+D K +FL PG +VLD G
Sbjct: 23 KTARGRTSSSTRWLQRQLNDPYVKRAQIEGYRGRAAFKIMELDDKFRFLVPGARVLDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAV VN+ G + G ++ VD + PI G + + DF D D+ V
Sbjct: 83 APGGWCQVAVPRVNALGEKKGKAIGRIVGVDLQEVEPIAGCEI-HQLDFMADDA-DQQVK 140
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
K DVV+SDMA +++G ++ DH I L A A + G + K+ G
Sbjct: 141 DWLGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYLAFDVLEVGGTFVSKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+L+ + + + +V +KPP+SR+ S+E F++ GF+G
Sbjct: 201 GELQTLLKKRFDKVANVKPPASRADSSEKFVIATGFRG 238
>gi|410089674|ref|ZP_11286287.1| 23S rRNA methyltransferase J [Pseudomonas viridiflava UASWS0038]
gi|409763061|gb|EKN48049.1| 23S rRNA methyltransferase J [Pseudomonas viridiflava UASWS0038]
Length = 216
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F D YV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKIIRPGMTVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAVLAQILEAVGNT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIK++ G +
Sbjct: 114 QVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + + +V++ KP SSR S E +LLGRGFKG
Sbjct: 174 DIRKLFDKVQMRKPLSSRDRSREQYLLGRGFKG 206
>gi|66047415|ref|YP_237256.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
syringae B728a]
gi|289676016|ref|ZP_06496906.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
syringae FF5]
gi|302185424|ref|ZP_07262097.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
syringae 642]
gi|422615846|ref|ZP_16684553.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
japonica str. M301072]
gi|422671904|ref|ZP_16731269.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
aceris str. M302273]
gi|424069354|ref|ZP_17806800.1| FtsJ cell division protein [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424073739|ref|ZP_17811154.1| FtsJ cell division protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440742410|ref|ZP_20921735.1| 23S rRNA methyltransferase J [Pseudomonas syringae BRIP39023]
gi|75500697|sp|Q4ZNQ4.1|RLME_PSEU2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|63258122|gb|AAY39218.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas syringae pv.
syringae B728a]
gi|330895314|gb|EGH27652.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
japonica str. M301072]
gi|330969643|gb|EGH69709.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
aceris str. M302273]
gi|407994921|gb|EKG35474.1| FtsJ cell division protein [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|407995551|gb|EKG36074.1| FtsJ cell division protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440377247|gb|ELQ13896.1| 23S rRNA methyltransferase J [Pseudomonas syringae BRIP39023]
Length = 216
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F D YV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ I ++++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAILEQILEAVGNT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIK++ G +
Sbjct: 114 QVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 DIRKLFDKVQMRKPSSSRDRSREQYLLARGFRG 206
>gi|241763937|ref|ZP_04761979.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax delafieldii
2AN]
gi|241366760|gb|EER61201.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax delafieldii
2AN]
Length = 220
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 118/205 (57%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL D YV+ A+KE YR R+A+KL EID ++ ++PG V+D G+ PG+WSQ +
Sbjct: 14 WLNDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGFTVVDLGSTPGAWSQYVRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G + Q G ++++D LP+ P++G L DF +P++ RL L+ +DVV+S
Sbjct: 74 LSPAGAAAGQLNGAIIALDILPMEPVEGVTFL-HGDFREPEVLARLEEALQGRTVDVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D I L + FA + KP ++K++ G +L R +
Sbjct: 133 DMAPNLSGIESADAARIAHLVELAVDFACHHLKPEGALVVKLFHGSGYGELVALFKRTFK 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK LKP +SR S+E FL+G G K
Sbjct: 193 TVKPLKPKASRDKSSETFLVGIGLK 217
>gi|358011504|ref|ZP_09143314.1| cell division protein [Acinetobacter sp. P8-3-8]
Length = 216
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV KGLV++ D L + + L + DF + ++ ++L+ IL +D
Sbjct: 73 AGKLVGD--------KGLVIASDILEMDALPDVTFL-QGDFREEEVFEKLLNILNGRTVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G R +D L + FA P L+K++ G + + +
Sbjct: 124 VVISDMAPNTSGNRAVDQPRQIYLCELALDFANKVLGPKGQFLVKVFQGSGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFEVLKTAKPAASRARSKEVFLIGQGRK 212
>gi|298157073|gb|EFH98162.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 216
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F D YV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ I ++++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDKILEQILEAVGNT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIK++ G +
Sbjct: 114 QVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDIYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 DIRKLFDKVQMRKPSSSRDRSREQYLLARGFRG 206
>gi|13476893|ref|NP_108462.1| cell division protein FtsJ [Mesorhizobium loti MAFF303099]
gi|81776173|sp|Q983F8.1|RLME_RHILO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|14027654|dbj|BAB53923.1| cell division protein; FtsJ [Mesorhizobium loti MAFF303099]
Length = 265
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 119/215 (55%), Gaps = 7/215 (3%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G SS WL+R DPYVQ++K + YR R+A+KL+EID K L+PG+KV+D GAAPG
Sbjct: 25 GLKESSRRWLQRHINDPYVQRSKADGYRSRAAYKLIEIDDKHHLLKPGMKVIDLGAAPGG 84
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W QVA S ++ P V+ +D L + + GA VL DF PD +L L
Sbjct: 85 WCQVAAARTKS---TAENPH--VVGIDYLEMDAVPGAPVLL-MDFLDPDAPQKLAEALGG 138
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+ DVVLSDMA TG + DH L FA++ KPG L K + G +L
Sbjct: 139 NP-DVVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPGGHFLAKTFQGGAENELL 197
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V +KPP+SR S EL+LL + FKG+
Sbjct: 198 SMLKKNFRSVHHVKPPASRDESVELYLLAKDFKGR 232
>gi|50085896|ref|YP_047406.1| cell division protein [Acinetobacter sp. ADP1]
gi|81392452|sp|Q6F8N1.1|RLME_ACIAD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|49531872|emb|CAG69584.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter sp. ADP1]
Length = 216
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 124/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K + ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYRLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D L + + L + DF + ++ ++L+ IL +D
Sbjct: 73 AGKLVGS--------KGLVIASDILAMDTLPDVTFL-QGDFREEEVFEKLLNILNGRTVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPDGQFVVKVFQGSGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K +KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTVKPAASRARSKEVFLIGQGRK 212
>gi|433775817|ref|YP_007306284.1| 23S rRNA methylase [Mesorhizobium australicum WSM2073]
gi|433667832|gb|AGB46908.1| 23S rRNA methylase [Mesorhizobium australicum WSM2073]
Length = 265
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G SS WL+R DPYVQ++K + YR R+A+KL+EID K L+PG+KV+D GAAPG
Sbjct: 25 GLKESSRRWLQRHINDPYVQRSKADGYRSRAAYKLIEIDDKHHLLKPGMKVIDLGAAPGG 84
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W QVA S ++ P V+ +D L + + GA VL DF D RL L
Sbjct: 85 WCQVAAARTKS---TAENPH--VIGIDYLEMDAVPGAPVLL-MDFLDADAPQRLAEALGG 138
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
D DVVLSDMA TG + DH L FA++ KPG L K + G +L
Sbjct: 139 DP-DVVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPGGHFLAKTFQGGAENELL 197
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V +KPP+SR S EL+LL + FKG+
Sbjct: 198 SMLKKNFRSVHHVKPPASRDESVELYLLAKDFKGR 232
>gi|237798555|ref|ZP_04587016.1| FtsJ cell division protein [Pseudomonas syringae pv. oryzae str.
1_6]
gi|422644505|ref|ZP_16707643.1| FtsJ cell division protein [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330958057|gb|EGH58317.1| FtsJ cell division protein [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|331021408|gb|EGI01465.1| FtsJ cell division protein [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 216
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F D YV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKIIRPGMTVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ I ++++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAILEQILEAVGNT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIK++ G +
Sbjct: 114 QVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 DIRKLFDKVQMRKPSSSRDRSREQYLLARGFRG 206
>gi|149202447|ref|ZP_01879419.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Roseovarius sp. TM1035]
gi|149143729|gb|EDM31763.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Roseovarius sp. TM1035]
Length = 238
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 126/218 (57%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+AFK++E+D K +FL PG +VLD G
Sbjct: 23 KTARGRTSSSTRWLQRQLNDPYVKRAQVEGYRGRAAFKIMELDDKFRFLVPGARVLDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAV VN+ G + G ++ VD + PI G + + DF D D+ V
Sbjct: 83 APGGWCQVAVPRVNALGEKQGKAIGRIVGVDLQEVEPIMGCEI-HQLDFMADDA-DQQVK 140
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
K DVV+SDMA +++G ++ DH I L A A + G + K+ G
Sbjct: 141 DWLGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYLAFDVLEVGGTFVSKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+L+ + + + +V +KPP+SR+ S+E F++ GF+G
Sbjct: 201 GELQTLLKKRFDKVANVKPPASRADSSEKFVVATGFRG 238
>gi|312963090|ref|ZP_07777575.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas
fluorescens WH6]
gi|311282601|gb|EFQ61197.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas
fluorescens WH6]
Length = 216
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 124/213 (58%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+ F DPYV+KA+K+ YR R+++KLLE+ K K RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQEHFNDPYVKKAQKDGYRSRASYKLLELQDKDKLFRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +L+ G + +L +D +P V DFTQ + +++ + +
Sbjct: 63 SQVASRLIGGQG---RLIASDILEMDSIP------DVTFVHGDFTQDAVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D L+K++ G + +
Sbjct: 114 QVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+I + + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 NIRKLFDKVQMRKPDSSRDRSREQYLLARGFRG 206
>gi|90424572|ref|YP_532942.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris BisB18]
gi|123275111|sp|Q212R3.1|RLME_RHOPB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|90106586|gb|ABD88623.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris BisB18]
Length = 238
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 123/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ R R+A+KL+EID K FL+PG+ V+D GAAPG WSQV
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGLRSRAAYKLIEIDDKYHFLKPGIAVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + +G V+++D L + I G V ++ DF + +L++++ K+D
Sbjct: 82 AAKRVG-----AADGRGKVVAIDLLEMPEIVG-VDFAQLDFLHAEAPAKLLSMI-GGKVD 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA N TG R+ D I L FA KPG + K++ L +
Sbjct: 135 VVLSDMAANTTGHRKTDQLRIVGLVEDAAAFACDVLKPGGTFVAKVFQSGADATLVTQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R + VK +KP SSR S+E ++L GF+G
Sbjct: 195 RDFVTVKHVKPASSRKDSSERYVLAMGFRG 224
>gi|398891854|ref|ZP_10645128.1| 23S rRNA methylase [Pseudomonas sp. GM55]
gi|398186411|gb|EJM73787.1| 23S rRNA methylase [Pseudomonas sp. GM55]
Length = 210
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 125/214 (58%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DP+V+ A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLNWLKEHFNDPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQGTLIASD---ILEMDSIP------DVTFIQGDFTEDAVLAQILEAVGNK 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + + KPG D LIKI+ G + +
Sbjct: 114 EVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLSTRVLKPGGDFLIKIFQGEGFDEFHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
S+ + + +V++ KP SSR S E +LLGRGF+G+
Sbjct: 174 SVRQQFEKVQMRKPTSSRDRSREQYLLGRGFRGR 207
>gi|402701789|ref|ZP_10849768.1| 23S rRNA methyltransferase J [Pseudomonas fragi A22]
Length = 216
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 124/213 (58%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+K+ YR R+++KLLEI + + +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLNWLKEHFNDPYVKMAQKDGYRSRASYKLLEIQERDRIIRPGMTVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDHVLAQILEAVGNT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIK++ G + +
Sbjct: 114 QVDLVISDMAPNMSGLAAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + + +V++ KP SSR S E +LLGRGF+G
Sbjct: 174 DIRKLFDKVQMRKPSSSRDRSREQYLLGRGFRG 206
>gi|383640200|ref|ZP_09952606.1| ribosomal RNA large subunit methyltransferase E [Sphingomonas
elodea ATCC 31461]
Length = 230
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 120/216 (55%), Gaps = 11/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ S WL+RQ DPYV++AK E YR R+A+KL E+D K FL+ +V+D G APG
Sbjct: 16 RGRTAQSTRWLERQLNDPYVRRAKAEGYRSRAAYKLTELDEKFGFLKGARRVVDLGVAPG 75
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV +++ PK V+ +D LP+ PI+GA +L + DF DRL+ L
Sbjct: 76 GWTQVVRRVL---------PKAAVVGIDLLPVDPIEGATLL-QMDFMDDAAPDRLIEALG 125
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D++LSDMA N G + D L FA+ PG D + K++ G L
Sbjct: 126 GTP-DLILSDMAANTVGHPQTDALRTMALVETAFDFAIRTLAPGGDFVAKVFAGGADSAL 184
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ VK KPP+SR S E +++ +GFKG+
Sbjct: 185 IAEMKRAFTTVKHAKPPASRKGSVEWYVVAQGFKGR 220
>gi|28871632|ref|NP_794251.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213966655|ref|ZP_03394806.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato T1]
gi|301383165|ref|ZP_07231583.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato Max13]
gi|302063400|ref|ZP_07254941.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato K40]
gi|302133773|ref|ZP_07259763.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|422300038|ref|ZP_16387581.1| FtsJ cell division protein [Pseudomonas avellanae BPIC 631]
gi|422590240|ref|ZP_16664897.1| FtsJ cell division protein [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|422658020|ref|ZP_16720457.1| FtsJ cell division protein [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|81729678|sp|Q87WP7.1|RLME_PSESM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|28854884|gb|AAO57946.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213928505|gb|EEB62049.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato T1]
gi|330877241|gb|EGH11390.1| FtsJ cell division protein [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|331016640|gb|EGH96696.1| FtsJ cell division protein [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|407987888|gb|EKG30565.1| FtsJ cell division protein [Pseudomonas avellanae BPIC 631]
Length = 216
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F D YV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKIIRPGMTVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ I ++++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAILEQILEAVGNT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIK++ G +
Sbjct: 114 QVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDIYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 DIRKLFDKVQMRKPSSSRDRSREQYLLARGFRG 206
>gi|422605009|ref|ZP_16677024.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. mori str. 301020]
gi|330888666|gb|EGH21327.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. mori str. 301020]
Length = 216
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F D YV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ I ++++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDKILEQILEAVGNT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIK++ G +
Sbjct: 114 QVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGCDVYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 DIRKLFDKVQMRKPSSSRDRSREQYLLARGFRG 206
>gi|104780020|ref|YP_606518.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas
entomophila L48]
gi|143461104|sp|Q1IF51.1|RLME_PSEE4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|95109007|emb|CAK13703.1| 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent
[Pseudomonas entomophila L48]
Length = 208
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F DP+V++A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 4 RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFTQ ++ +++ + D
Sbjct: 64 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTQDEVLQQILQAVGDS 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G +D L + A KPG D LIKI+ G +
Sbjct: 115 HVDLVISDMAPNMSGTPAVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDMYLK 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LLG+GFKG
Sbjct: 175 DVRSKFDKVQMRKPSSSRDRSREQYLLGKGFKG 207
>gi|408378463|ref|ZP_11176060.1| 23S rRNA methyltransferase J [Agrobacterium albertimagni AOL15]
gi|407747600|gb|EKF59119.1| 23S rRNA methyltransferase J [Agrobacterium albertimagni AOL15]
Length = 260
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 128/227 (56%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL ++V KGK SS WL+R DPYVQ+AK E YR R+AFKLLEID K + L+
Sbjct: 11 TGRKLGQKVKKGKLKASSRRWLERHINDPYVQRAKLEGYRARAAFKLLEIDEKHQVLKGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ +S D + V ++D L + I G +L DF P
Sbjct: 71 KRIIDLGAAPGSWSQIAAKVTDSTDEDIR-----VAAIDFLEMAQIPGVKILH-LDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
D +L+ + ++VLSDMA TG ++ DH L FAV G L
Sbjct: 125 DAPRQLIEAVGGTP-NLVLSDMAAPTTGHQKTDHLRTMHLCEVAAHFAVEVLAEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G +L + + + QV +KP SSR S E+FLL +GFKG+
Sbjct: 184 KTFQGGTEKELLTMLKQNFRQVLHIKPASSRQESVEMFLLAKGFKGR 230
>gi|323136970|ref|ZP_08072050.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylocystis sp. ATCC
49242]
gi|322397731|gb|EFY00253.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylocystis sp. ATCC
49242]
Length = 242
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK+E YR R+A+KL+E+D + +PG +++D GAAPG WSQV
Sbjct: 29 SSTLWLERQLNDPYVARAKREGYRSRAAYKLIEMDDRYHLFKPGGRIVDLGAAPGGWSQV 88
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A V +K +G V+ VD L + PI G V + DF D D V + + D
Sbjct: 89 AADRVK-----AKDGRGKVVGVDLLDMEPITG-VTFAVKDFNDDDAPD-FVKAMLGGEAD 141
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
V+SDMA NATG ++ DH I LA FA+ G + K+ G QL +
Sbjct: 142 GVMSDMAANATGHKQTDHLRIVALAELAAEFAMDVLAAGGFFVAKVLQGGTEGQLLTRLK 201
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R ++ V+ +KP +SR+ SAEL++L GF+G+
Sbjct: 202 RDFATVRHVKPAASRADSAELYVLATGFRGR 232
>gi|357029282|ref|ZP_09091285.1| cell division protein ftsJ [Mesorhizobium amorphae CCNWGS0123]
gi|355535897|gb|EHH05179.1| cell division protein ftsJ [Mesorhizobium amorphae CCNWGS0123]
Length = 265
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 117/215 (54%), Gaps = 7/215 (3%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G SS WL+R DPYVQ++K + YR R+A+KL+EID K L+PG+KV+D GAAPG
Sbjct: 25 GLKESSRRWLQRHINDPYVQRSKADGYRSRAAYKLIEIDDKHHLLKPGMKVIDLGAAPGG 84
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W QVA S + V+ +D L + + GA VL DF P+ +L L
Sbjct: 85 WCQVAAARTKSTADNPH-----VIGIDYLEMDAVPGAPVLL-MDFLDPEAPQKLAEALGG 138
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
D DVVLSDMA TG + DH L FA++ KPG L K + G +L
Sbjct: 139 DP-DVVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPGGHFLAKTFQGGAENELL 197
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V +KPP+SR S EL+LL + FKG+
Sbjct: 198 SMLKKNFRSVHHVKPPASRDESVELYLLAKDFKGR 232
>gi|408479046|ref|ZP_11185265.1| 23S rRNA methyltransferase J [Pseudomonas sp. R81]
Length = 216
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+ F DPYV+KA+K+ YR R+++KLLE+ K K RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQEHFNDPYVKKAQKDGYRSRASYKLLELQDKDKLFRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +L+ G + +L +D +P V DFTQ + ++ + +
Sbjct: 63 SQVASRLIGGQG---RLIASDILEMDSIP------DVTFVHGDFTQDAVLAEILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D L+K++ G + +
Sbjct: 114 QVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+I + + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 NIRKLFDKVQMRKPDSSRDRSREQYLLARGFRG 206
>gi|422403933|ref|ZP_16480989.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330875231|gb|EGH09380.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 216
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 121/209 (57%), Gaps = 9/209 (4%)
Query: 20 SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA 79
SH WLK F D YV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG WSQV
Sbjct: 7 SHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVT 66
Query: 80 VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV 139
+L+ G + +L +D +P V + DFT+ I ++++ + + ++D+
Sbjct: 67 SRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDKILEQILEAVGNTQVDL 117
Query: 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR 199
V+SDMAPN +G+ +D L + A +PG D LIK++ G + I +
Sbjct: 118 VISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRK 177
Query: 200 FYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ +V++ KP SSR S E +LL RGF+G
Sbjct: 178 LFDKVQMRKPSSSRDRSREQYLLARGFRG 206
>gi|121607215|ref|YP_995022.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Verminephrobacter
eiseniae EF01-2]
gi|143462104|sp|A1WEE7.1|RLME_VEREI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|121551855|gb|ABM56004.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Verminephrobacter
eiseniae EF01-2]
Length = 242
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 118/205 (57%), Gaps = 9/205 (4%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL + DPYVQ+A+KE YR R+A+KL EID ++ +RPG V+D GA PG+WSQ +
Sbjct: 14 WLDQHVNDPYVQRARKEGYRARAAYKLREIDEQLGLIRPGYTVVDLGATPGAWSQYLRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
+ + +G ++++D LP+ P++G L DF PD+Q RL L +DVV+S
Sbjct: 74 MAA--------EGAIIALDILPMEPLEGVTCLHG-DFRAPDVQQRLEQALAGRVVDVVVS 124
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D + L + F+ + KP L+K++ G L + +
Sbjct: 125 DMAPNLSGIACADAARMADLVELAVAFSCRHLKPDGALLVKLFHGSGYSDLAALFKQTFL 184
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
+V LKP +SR S+E FLLGRG K
Sbjct: 185 RVVPLKPKASRDKSSETFLLGRGLK 209
>gi|224823864|ref|ZP_03696973.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudogulbenkiania
ferrooxidans 2002]
gi|347541233|ref|YP_004848659.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudogulbenkiania sp.
NH8B]
gi|224604319|gb|EEG10493.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudogulbenkiania
ferrooxidans 2002]
gi|345644412|dbj|BAK78245.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudogulbenkiania sp.
NH8B]
Length = 205
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 121/207 (58%), Gaps = 9/207 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS+ WL+ D YV A+K+ YR R+A+KLLEI+ K K +RPG + D G+APGSWSQV
Sbjct: 6 SSNDWLREHVHDHYVHMAQKDGYRARAAYKLLEINDKDKLIRPGTVLADLGSAPGSWSQV 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +LV KG V ++D LP+ PI V + DF + ++ D+ V +L +LD
Sbjct: 66 AARLVGD--------KGKVYALDILPMNPI-ADVEFIQGDFREQEVLDQFVALLGGRELD 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +GM +D L + F + KPG L+K++ G + +S+
Sbjct: 117 LVISDMAPNISGMSAIDQARSFHLCELALEFVRDHLKPGGSFLVKVFQGSDFQPYLKSMR 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRG 225
+ +V KP +SR S E++LLG+G
Sbjct: 177 ELFDEVVSRKPKASRDRSTEIYLLGKG 203
>gi|395647264|ref|ZP_10435114.1| 23S rRNA methyltransferase J [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 216
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+ F DPYV+KA+K+ YR R+++KLLE+ K K RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQEHFNDPYVKKAQKDGYRSRASYKLLELQDKDKLFRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +L+ G + +L +D +P V DFTQ + ++ + +
Sbjct: 63 SQVASRLIGGQG---RLIASDILEMDSIP------DVTFVHGDFTQDAVLAEILQAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D L+K++ G + +
Sbjct: 114 QVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+I + + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 NIRKLFDKVQMRKPDSSRDRSREQYLLARGFRG 206
>gi|152985989|ref|YP_001350794.1| cell division protein FtsJ [Pseudomonas aeruginosa PA7]
gi|452876023|ref|ZP_21953391.1| 23S rRNA methyltransferase J [Pseudomonas aeruginosa VRFPA01]
gi|189040320|sp|A6VCK9.1|RLME_PSEA7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|150961147|gb|ABR83172.1| cell division protein FtsJ [Pseudomonas aeruginosa PA7]
gi|452187146|gb|EME14164.1| 23S rRNA methyltransferase J [Pseudomonas aeruginosa VRFPA01]
Length = 207
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 121/214 (56%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+++ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ G + +L +D +P V + DFT+ + R++ + +
Sbjct: 63 SQVTSRVIGDRG---RLIASDILEMDSIP------DVTFIQGDFTEDAVFARILEAIGEH 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G Q +
Sbjct: 114 PVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +V++ KP SSR S E +LL RGF+G+
Sbjct: 174 QAREMFDKVQMRKPLSSRDRSREQYLLARGFRGE 207
>gi|422650884|ref|ZP_16713684.1| FtsJ cell division protein [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330963967|gb|EGH64227.1| FtsJ cell division protein [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 216
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F D YV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKVIRPGMTVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ I ++++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAILEQILEAVGNT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIK++ G +
Sbjct: 114 QVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDIYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 DIRKLFDKVQMRKPSSSRDRSREQYLLARGFRG 206
>gi|303256870|ref|ZP_07342884.1| ribosomal RNA large subunit methyltransferase J [Burkholderiales
bacterium 1_1_47]
gi|330998881|ref|ZP_08322608.1| ribosomal RNA large subunit methyltransferase J [Parasutterella
excrementihominis YIT 11859]
gi|302860361|gb|EFL83438.1| ribosomal RNA large subunit methyltransferase J [Burkholderiales
bacterium 1_1_47]
gi|329576095|gb|EGG57614.1| ribosomal RNA large subunit methyltransferase J [Parasutterella
excrementihominis YIT 11859]
Length = 214
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 130/217 (59%), Gaps = 6/217 (2%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
V + K S+ W+KR DP+V+K+ +E YR RS +KL+EID K K ++PG+ V+D GAA
Sbjct: 3 VSEKKLRSNPAWIKRHLTDPFVKKSVQEGYRARSVYKLMEIDDKDKIIKPGMSVVDLGAA 62
Query: 72 PGSWSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
PGSW+Q V +L + G + G V+++D LP+ PI+G L + DF + ++ D+L
Sbjct: 63 PGSWTQIVKERLTDKDG----KIDGKVIAMDILPMEPIEGVHFL-QGDFREQEVADKLTD 117
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +K+DVVLSDMAPN +G+ D L + FA K + K++ G
Sbjct: 118 LLEGEKVDVVLSDMAPNLSGVAAADAARCLLLNELALDFAKENLKKNGSFVCKVFQGSGY 177
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q E+ + + +V + KP +SRS SAE++++ R K
Sbjct: 178 SQYVEACKKTFRKVSVRKPEASRSSSAEVYIVARDLK 214
>gi|452752956|ref|ZP_21952695.1| Cell division protein FtsJ [alpha proteobacterium JLT2015]
gi|451959778|gb|EMD82195.1| Cell division protein FtsJ [alpha proteobacterium JLT2015]
Length = 232
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 124/215 (57%), Gaps = 11/215 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ +SS WL+RQ DPYV++AK + YR R+AFKL E+D K L+ +V+D GAAPG
Sbjct: 23 RGRSNSSTRWLQRQLNDPYVKEAKAQGYRSRAAFKLKELDEKFGLLKQASRVVDLGAAPG 82
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV ++ ++PK V ++D L + PI+GA +L+ DF + D L+ L
Sbjct: 83 GWTQVVLE---------RRPKARVAAIDLLDMDPIEGAEILT-MDFMADEAPDALMQAL- 131
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+VLSDMA N G ++ DH L + FAV PG + K+ G L
Sbjct: 132 GGPADLVLSDMAANTIGHKQTDHLRTMALVETAMDFAVDALAPGGAFVAKVLAGGADSAL 191
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R ++ VK +KPP+SR S+E +++ +GFKG
Sbjct: 192 VSELKRRFTSVKHVKPPASRKGSSEWYVVAQGFKG 226
>gi|49473815|ref|YP_031857.1| cell division protein ftsJ [Bartonella quintana str. Toulouse]
gi|81647276|sp|Q6G0S9.1|RLME_BARQU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|49239318|emb|CAF25648.1| Cell division protein ftsJ [Bartonella quintana str. Toulouse]
Length = 241
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 124/211 (58%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+E++ + KFL+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEMNERYKFLKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V S ++P V+ +D LP+ P+ G ++L + DF D +L+ L K D
Sbjct: 94 AQRIVGS---SDEKPS--VVGIDYLPVVPLPGVIML-EMDFLHTDAPQKLIDAL-GTKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ D+ T L FA++ K G L+K + G L ++
Sbjct: 147 VVLSDMAAPTTGHRQTDYLRTTYLCEVAADFALSVLKSGGHFLVKAFQGGAENTLLTTLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SR+ S EL+LL FK K
Sbjct: 207 QNFKTVHHVKPPASRTESVELYLLALEFKAK 237
>gi|325276157|ref|ZP_08141962.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas sp. TJI-51]
gi|324098694|gb|EGB96735.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas sp. TJI-51]
Length = 208
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F DP+V++A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 4 RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ + +++ + D
Sbjct: 64 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAVLQQILDAVGDS 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G E+D L + A KPG D LIKI+ G +
Sbjct: 115 HVDLVISDMAPNMSGTPEVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDMYLK 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LLG+GFKG
Sbjct: 175 DVRTKFDKVQMRKPSSSRDRSREQYLLGKGFKG 207
>gi|383502119|ref|YP_005415478.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
australis str. Cutlack]
gi|378933130|gb|AFC71635.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
australis str. Cutlack]
Length = 227
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 118/213 (55%), Gaps = 5/213 (2%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ K + SS WL+RQ DPYV KA+ E +R R+A+KLLEI K K P +K++D GA
Sbjct: 16 KTSKKRTISSINWLRRQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGA 75
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG WSQVA KL+ + ++S+D L I PI G L K DF + + ++ ++
Sbjct: 76 APGGWSQVASKLIKA---SDNSLNNKIISIDLLEIEPIIGVEFLQK-DFFEKNTEELIIQ 131
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L D K D+V+SDMA N G + DH L FA+ KP + KI+ G
Sbjct: 132 VL-DGKADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAE 190
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+L + R + VK KP SSRS S E++L+
Sbjct: 191 NELLNKVKREFKTVKHFKPSSSRSESTEIYLVA 223
>gi|315499641|ref|YP_004088444.1| ribosomal RNA methyltransferase rrmj/ftsj [Asticcacaulis
excentricus CB 48]
gi|315417653|gb|ADU14293.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Asticcacaulis
excentricus CB 48]
Length = 238
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 122/215 (56%), Gaps = 12/215 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+RQ DP+VQKAK E +R R+AFKL EID + L+ G +V+D G APG
Sbjct: 36 KQRTQSSAKWLERQLNDPFVQKAKAEGWRSRAAFKLQEIDDRFHILKRGARVVDLGCAPG 95
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W Q+A +H V+ VD LP+ PI GA ++ + DFT P I RL+ ++
Sbjct: 96 GWVQMAQSRGAAH----------VVGVDLLPVDPIPGADMI-EADFTDPAIPARLMEMM- 143
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DK DVVLSD+A N G R+ DH I L FA+ KPG + K + G L
Sbjct: 144 GDKPDVVLSDLAHNTVGHRQTDHLKIMGLLELASDFALDNLKPGGAFVAKAFQGGETEHL 203
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VK KP SSR+ S+E++++ +GFKG
Sbjct: 204 LLKLKLAFRDVKHFKPKSSRADSSEIYIVAQGFKG 238
>gi|383772512|ref|YP_005451578.1| ribosomal RNA large subunit methyltransferase E [Bradyrhizobium sp.
S23321]
gi|381360636|dbj|BAL77466.1| ribosomal RNA large subunit methyltransferase E [Bradyrhizobium sp.
S23321]
Length = 228
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 127/228 (55%), Gaps = 9/228 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV KAK YR R+AFKLLEID K + L+
Sbjct: 5 TTGRLHVQVKTGGKRKLSSKLWLERQLNDPYVVKAKALGYRSRAAFKLLEIDDKYRLLKH 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A K V S KG V+++D L + I G V ++ DF
Sbjct: 65 GMAVVDLGAAPGGWSQIAAKRVGSI-----DGKGKVVAIDLLDMPEIAG-VEFAQLDFMD 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
D +L +L DVV+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 NDAPAKLNAMLGGGA-DVVMSDMAANTTGHRKTDQLRIVGLIETAAAFACDVLKPGGTFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + +L + R ++ V+ +KP +SR+ S+E ++L GF+G+
Sbjct: 178 AKAFQSGADAELLAQLKRDFATVRHVKPAASRADSSERYVLATGFRGE 225
>gi|330504835|ref|YP_004381704.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
NK-01]
gi|328919121|gb|AEB59952.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
NK-01]
Length = 207
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 120/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+K+ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSQRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ G + +L +D +P V + DFT + RL+ + ++
Sbjct: 63 SQVTSRVIGDKG---RLIASDILEMDAIP------DVTFIQGDFTDDAVFTRLLEAIGEN 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G +
Sbjct: 114 PVDLVISDMAPNMSGVRTADQARAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDAYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 QVRETFDKVQMRKPLSSRDRSREQYLLARGFRG 206
>gi|91205935|ref|YP_538290.1| ribosomal RNA large subunit methyltransferase J [Rickettsia bellii
RML369-C]
gi|157826704|ref|YP_001495768.1| ribosomal RNA large subunit methyltransferase J [Rickettsia bellii
OSU 85-389]
gi|122425326|sp|Q1RHG3.1|RLME_RICBR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040326|sp|A8GV60.1|RLME_RICB8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91069479|gb|ABE05201.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia bellii
RML369-C]
gi|157802008|gb|ABV78731.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia bellii
OSU 85-389]
Length = 227
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 114/205 (55%), Gaps = 5/205 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV KA+ E +R R+A+KLLEI K K P +KV+D GAAPG WSQV
Sbjct: 24 SSSNWLRRQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKIFTPNMKVVDLGAAPGGWSQV 83
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KL+ + + K ++SVD L I PI G K DF + D ++ ++ LK K D
Sbjct: 84 ASKLIKATDGNLKNK---IISVDLLEIEPIPGVESFQK-DFFEKDTEELIIQALK-GKAD 138
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA N G + DH L FA+ P + KI+ G +L +
Sbjct: 139 IVLSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLNPSGHFIAKIFRGGAENELLNKVK 198
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
R +S VK KP SSR S E++L+
Sbjct: 199 REFSTVKHFKPSSSRKESTEIYLVA 223
>gi|359430261|ref|ZP_09221273.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter sp.
NBRC 100985]
gi|358234311|dbj|GAB02812.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter sp.
NBRC 100985]
Length = 216
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 123/209 (58%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K + ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYRMIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV ++G +L++D LP V + DF + ++ ++L+ IL ++D
Sbjct: 73 AGKLVGANGLVIASD---ILAMDALP------DVTFLQGDFREEEVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGSGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLIGQGRK 212
>gi|418296585|ref|ZP_12908428.1| cell division protein [Agrobacterium tumefaciens CCNWGS0286]
gi|355538760|gb|EHH08002.1| cell division protein [Agrobacterium tumefaciens CCNWGS0286]
Length = 246
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 121/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYVQ+AK E YR R+AFKLLEI+ K + L+ +++D GAAPGSWSQ+
Sbjct: 27 SSRRWLERHINDPYVQRAKLEGYRARAAFKLLEINDKHQILKGATRIIDLGAAPGSWSQI 86
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+ +S D + V ++D L I PI G +L + DF P ++L+ + D
Sbjct: 87 ASKVTDSTEDDIR-----VAAIDFLEIDPIPGVKIL-QLDFLDPTAPEKLMEAVGGTP-D 139
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG ++ DH L FAV G L K + G QL + +
Sbjct: 140 LVLSDMAAPTTGHQKTDHIRTMHLCEVAADFAVQVLAEGGHFLAKTFQGGTEKQLLDMLK 199
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + QV +KP SSRS S E+FLL + FKG+
Sbjct: 200 KNFKQVLHVKPASSRSESVEMFLLAKHFKGR 230
>gi|385333356|ref|YP_005887307.1| ribosomal RNA large subunit methyltransferase J [Marinobacter
adhaerens HP15]
gi|311696506|gb|ADP99379.1| ribosomal RNA large subunit methyltransferase J [Marinobacter
adhaerens HP15]
Length = 206
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 125/213 (58%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS+ WL+ DP+V++A+ + YR R+++KLLEI+ K + + P + V+D G+APG W
Sbjct: 3 RSKSSNRWLEEHVNDPFVKQAQVDGYRSRASYKLLEINKKDRLIHPNMVVVDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KLV KG V++ D LP+ I G V + DFT+ D+ + ++ L DD
Sbjct: 63 SQVAAKLVGH--------KGRVIASDILPMDAIAG-VDFIQGDFTENDVFESIMATLGDD 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+DVV+SDMAPN +G+ D L + A KP L K++ G + +
Sbjct: 114 PVDVVISDMAPNISGVTVADQASSMYLVELALDMASQVLKPKGSFLAKVFQGEGYDEYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
S+ + +V + KP SSRS S E+++LG+GFKG
Sbjct: 174 SVRAVFDKVVVRKPDSSRSRSREVYILGKGFKG 206
>gi|337269434|ref|YP_004613489.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium
opportunistum WSM2075]
gi|336029744|gb|AEH89395.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium
opportunistum WSM2075]
Length = 236
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G SS WL+R DPYVQ++K + YR R+A+KL+EID K L+PG+KV+D GAAPG
Sbjct: 25 GLKESSRRWLQRHINDPYVQRSKADGYRSRAAYKLIEIDDKHHLLKPGMKVIDLGAAPGG 84
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W QVA S ++ P V+ +D L + + GA VL DF P +L L
Sbjct: 85 WCQVAAARTKS---TAENPH--VIGIDYLEMDAVPGAPVLL-MDFLNPAAPQKLAEALGG 138
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
D DVVLSDMA TG + DH L FA++ KPG L K + G +L
Sbjct: 139 DP-DVVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPGGHFLAKTFQGGAENELL 197
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V +KPP+SR S EL+LL + FKG+
Sbjct: 198 SMLKKNFRSVHHVKPPASRDESVELYLLAKDFKGR 232
>gi|335035442|ref|ZP_08528783.1| cell division protein [Agrobacterium sp. ATCC 31749]
gi|333793209|gb|EGL64565.1| cell division protein [Agrobacterium sp. ATCC 31749]
Length = 246
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 120/211 (56%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYVQ+AK E YR R+AFKLLEI+ K + L+ +++D GAAPGSWSQ+
Sbjct: 27 SSRRWLERHINDPYVQRAKLEGYRARAAFKLLEINDKHQILKGATRIIDLGAAPGSWSQI 86
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+ +S D + V ++D L I PI G +L + DF P D+L+ + D
Sbjct: 87 AAKVTDSTEDDIR-----VAAIDFLEIDPIPGVKIL-QLDFLDPTAPDQLMEAVGGTP-D 139
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG ++ DH L FAV G L K + G L + +
Sbjct: 140 LVLSDMAAPTTGHQKTDHIRTMHLCEVAADFAVQVLAEGGHFLAKTFQGGTEKALLDMLK 199
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + QV +KP SSRS S E+FLL + FKG+
Sbjct: 200 KNFKQVLHIKPASSRSESVEMFLLAKHFKGR 230
>gi|288958935|ref|YP_003449276.1| cell division protein methyltransferase [Azospirillum sp. B510]
gi|288911243|dbj|BAI72732.1| cell division protein methyltransferase [Azospirillum sp. B510]
Length = 235
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 121/213 (56%), Gaps = 7/213 (3%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+R DPYV +A K YR R+AFKLL++D K + L PG +V+D GAAPG W
Sbjct: 25 RTESSKRWLERHLNDPYVAEATKRGYRSRAAFKLLQLDEKFRLLGPGKRVVDLGAAPGGW 84
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+Q+AV+ V K V+ +D LP+ P+ GA + + DF + DRL L
Sbjct: 85 TQIAVEKVQVAREGWK-----VVGLDILPMDPVPGATTM-QADFLEEGAADRLKEAL-GG 137
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+VLSDMA TG ++ DH I LA A FA PG + K++ G L +
Sbjct: 138 PADLVLSDMAAPTTGHQQTDHLRIMGLAEAAYDFAEEVLAPGGAFVAKLFQGGAERSLLD 197
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R ++ VK KPP+SR+ S+E +++ GF+G
Sbjct: 198 RLRRDFAVVKHAKPPASRAESSETYVVATGFRG 230
>gi|226946314|ref|YP_002801387.1| ribosomal RNA large subunit methyltransferase J/FtsJ [Azotobacter
vinelandii DJ]
gi|259494558|sp|C1DFL6.1|RLME_AZOVD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226721241|gb|ACO80412.1| ribosomal RNA large subunit methyltransferase J/FtsJ [Azotobacter
vinelandii DJ]
Length = 207
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F DPYV+ A+K+ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSHRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ +G +++ D LP+ I V + DFT + L+ + +
Sbjct: 63 SQVTSRLIGD--------RGRLIASDILPMDSIPD-VTFIQGDFTDDAVFALLLEAIGEQ 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G++ D L + A +PG D LIKI+ G Q
Sbjct: 114 PVDLVISDMAPNMSGVKAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYLR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 QVREGFDKVQMRKPLSSRDRSREQYLLARGFRG 206
>gi|90085359|dbj|BAE91420.1| unnamed protein product [Macaca fascicularis]
Length = 198
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 102/166 (61%)
Query: 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPD 123
+VLDCGAAPG+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P
Sbjct: 27 RVLDCGAAPGAWSQVAVQKVNAAGTDPSSPIGFVLGVDLLHIFPLEGATFLCPADVTDPR 86
Query: 124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183
R++ +L + DV+LSDMAPNATG R++DHD + L + ++ +P L K
Sbjct: 87 TSQRILEVLPGGRADVILSDMAPNATGFRDLDHDRLISLCLTLLSMTPDILQPRGTFLCK 146
Query: 184 IWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
W G +L+ +T + V+I+KP +SR S+E++ L ++G+
Sbjct: 147 TWAGSQSHRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYQGR 192
>gi|209885593|ref|YP_002289450.1| ribosomal RNA large subunit methyltransferase J [Oligotropha
carboxidovorans OM5]
gi|337740807|ref|YP_004632535.1| ribosomal RNA large subunit methyltransferase E [Oligotropha
carboxidovorans OM5]
gi|386029824|ref|YP_005950599.1| ribosomal RNA large subunit methyltransferase E [Oligotropha
carboxidovorans OM4]
gi|226705298|sp|B6JHM9.1|RLME_OLICO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|209873789|gb|ACI93585.1| ribosomal RNA large subunit methyltransferase J [Oligotropha
carboxidovorans OM5]
gi|336094892|gb|AEI02718.1| ribosomal RNA large subunit methyltransferase E [Oligotropha
carboxidovorans OM4]
gi|336098471|gb|AEI06294.1| ribosomal RNA large subunit methyltransferase E [Oligotropha
carboxidovorans OM5]
Length = 225
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 121/210 (57%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ +R R+A+KL E+D K FL+ G V+D GAAPG WSQ+
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGFRSRAAYKLREMDDKYHFLKQGQAVVDLGAAPGGWSQI 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V ++ +G V+++D L + I G V ++ DF D ++L +L D
Sbjct: 82 AAKRVG-----AEAGRGKVIAIDLLEMGEIPG-VTFAQLDFLSDDAPEKLRAMLGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N TG R+ D I L + FA PG L K++ L+ +
Sbjct: 135 IVMSDMAANTTGHRKTDQLRIVGLVESAAAFAAEVLNPGGTFLAKVFQSGADATLQAELK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ V+ +KP +SR S+E ++L GF+G
Sbjct: 195 RNFATVRHVKPAASRQDSSERYVLAMGFRG 224
>gi|398825399|ref|ZP_10583696.1| 23S rRNA methylase [Bradyrhizobium sp. YR681]
gi|398223609|gb|EJN09945.1| 23S rRNA methylase [Bradyrhizobium sp. YR681]
Length = 228
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 125/227 (55%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV KAK YR R+AFKLLEID K + L+
Sbjct: 5 TTGRLHVQVKTGGKRKLSSKLWLERQLNDPYVVKAKAMGYRSRAAFKLLEIDDKYRLLKH 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A K V S KG V+++D L + I G V ++ DF
Sbjct: 65 GMAVVDLGAAPGGWSQIAAKRVG-----SVDGKGKVVAIDLLDMPEIAG-VDFAQLDFMD 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
D +L +L D+V+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 NDAPAKLTAMLGGGA-DIVMSDMAANTTGHRKTDQLRIVGLIETAAAFACDVLKPGGTFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + +L + R ++ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKAFQSGADAELLAQLKRDFATVRHVKPAASRQDSSERYVLATGFRG 224
>gi|417408776|gb|JAA50924.1| Putative cell division protein ftsj, partial [Desmodus rotundus]
Length = 219
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 112/210 (53%), Gaps = 24/210 (11%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
+ HLWL RQ DP+V+ AK E+YRCRSAFKLLE+D+K + LRPGL+
Sbjct: 27 AEHLWLMRQLKDPFVKAAKVESYRCRSAFKLLEMDAKHRILRPGLRX------------- 73
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
P G VL VD L I P+ GA L + T P ++ +L D
Sbjct: 74 -----------XSSPVGFVLGVDLLHISPLGGATFLCPANVTDPKTFQKIQELLPGGTAD 122
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
V+LSDMAPNATG+R +DHD + L ++++ PG L K W G +L++ +
Sbjct: 123 VILSDMAPNATGIRGLDHDRLIGLCLSLLDMVPEILHPGGSFLCKTWAGSQSHRLQKRLM 182
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + LKP +SR SAE+++L ++G
Sbjct: 183 GEFQNTRTLKPEASRKDSAEVYILATQYRG 212
>gi|157825346|ref|YP_001493066.1| ribosomal RNA large subunit methyltransferase J [Rickettsia akari
str. Hartford]
gi|189040325|sp|A8GMD3.1|RLME_RICAH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|157799304|gb|ABV74558.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia akari
str. Hartford]
Length = 227
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 118/213 (55%), Gaps = 5/213 (2%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ K + SS WL+RQ DPYV KA+ E +R R+A+KLLEI K K P +K++D GA
Sbjct: 16 KTSKKRTVSSGNWLRRQLNDPYVAKARIEGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGA 75
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG WSQVA KL+ + ++S+D L I PI G L K DF + + ++ ++
Sbjct: 76 APGGWSQVASKLIKA---SDNSLNNKIISIDLLEIEPIIGVEFLQK-DFFEENTEELIIQ 131
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L D K D+V+SDMA N TG + DH L FA+ KP + KI+ G
Sbjct: 132 VL-DGKADIVMSDMASNTTGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAE 190
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+L + + VK KP SSRS S E++L+
Sbjct: 191 NELLNKVKCEFKTVKHFKPSSSRSESTEIYLVA 223
>gi|261323077|ref|ZP_05962274.1| ribosomal RNA large subunit methyltransferase J [Brucella neotomae
5K33]
gi|261299057|gb|EEY02554.1| ribosomal RNA large subunit methyltransferase J [Brucella neotomae
5K33]
Length = 240
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 122/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + P+ V+ +D L + P+ G V+L + DF + +L+ L DK D
Sbjct: 98 AARIV---GSTDENPQ--VVGIDYLHVDPLPG-VILLEMDFLDDEAPQKLMDAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA G R DH L FAV+ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTAGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 211 QKFRSVHHVKPPASRAESVELYLLARDFKG 240
>gi|319942668|ref|ZP_08016975.1| ribosomal RNA large subunit methyltransferase E [Sutterella
wadsworthensis 3_1_45B]
gi|319803751|gb|EFW00686.1| ribosomal RNA large subunit methyltransferase E [Sutterella
wadsworthensis 3_1_45B]
Length = 217
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 124/218 (56%), Gaps = 6/218 (2%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
V K S+ W++R DP+V++++ E YR RS +KL+E+D K L+PG V+D G+A
Sbjct: 3 VATKKLRSNRAWIERHINDPFVKRSRAEGYRARSVYKLIELDEKEHLLKPGSTVVDLGSA 62
Query: 72 PGSWSQVA-VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
PGSW+QV +L G +G ++++D LP+ PID L + DF + ++ D+L
Sbjct: 63 PGSWTQVVRERLAGPDG----SVRGRIIAMDILPMDPIDDVYFL-QGDFREQEVADKLAE 117
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
IL DK+DVVLSDMAPN +G+ D L + F + + P + K + G
Sbjct: 118 ILNGDKVDVVLSDMAPNLSGIAAADAARSLLLNELALEFCLEHLAPNGVFVTKAFQGSGY 177
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
Q ES+ R + +V KP +SR SAE++L+ RG K
Sbjct: 178 SQYVESLKRVFKKVAAKKPEASRDTSAEVYLVSRGLKA 215
>gi|403050929|ref|ZP_10905413.1| 23S rRNA methyltransferase J [Acinetobacter bereziniae LMG 1003]
Length = 216
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV KGLV++ D L + + L + DF + ++ ++L+ IL +D
Sbjct: 73 AGKLVGD--------KGLVIASDILEMDALPDVTFL-QGDFREEEVFEKLLNILNGRTVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 VVISDMAPNTSGNRAVDQPRQIYLCELALDFANKVLGPKGQFVVKVFQGSGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLIGQGRK 212
>gi|429334706|ref|ZP_19215359.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas putida
CSV86]
gi|428760598|gb|EKX82859.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas putida
CSV86]
Length = 208
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 125/214 (58%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SSH WL+ F DP+V++A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 4 RSKSSHNWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFTQ ++ +++ + +
Sbjct: 64 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTQDEVLAQILEAVGNS 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G +D L + A +PG D LIKI+ G +
Sbjct: 115 QVDLVISDMAPNMSGTPAVDMPRAMFLCELALDLASRVLRPGGDFLIKIFQGEGFDTYLK 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +V++ KP SSR S E +LL RG++G+
Sbjct: 175 DVRQKFDKVQMRKPSSSRDRSREQYLLARGYRGE 208
>gi|319404629|emb|CBI78235.1| cell division protein ftsJ [Bartonella rochalimae ATCC BAA-1498]
Length = 240
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 120/210 (57%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR RSA+KL+EID + K + G K++D GAAPG W QV
Sbjct: 32 SSRRWLERHLNDPYVHQSKVDGYRSRSAYKLIEIDERYKIFKKGQKIIDLGAAPGGWCQV 91
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + V +S K V+ +D LP+ P+ G V+L + DF + +L+ L ++ D
Sbjct: 92 AARKV-----ESSDQKPSVVGIDYLPMDPLPGVVIL-EMDFLHENAPQKLMNAL-GEQPD 144
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG R+ DH L FA++ KPG L K + G L ++
Sbjct: 145 IVLSDMAAPTTGHRQTDHLRTVYLCEVAADFALSVLKPGGHFLAKAFQGGAENTLLTTLK 204
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL FKG
Sbjct: 205 QNFKTVHHVKPPASRAESVELYLLALEFKG 234
>gi|319784202|ref|YP_004143678.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317170090|gb|ADV13628.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 247
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G SS WL+R DPYVQ++K + YR R+A+KL+EID K L+PG+KV+D GAAPG
Sbjct: 25 GLKESSRRWLQRHINDPYVQRSKADGYRSRAAYKLIEIDDKHHLLKPGMKVIDLGAAPGG 84
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W QVA S + +P V+ +D L + + GA VL DF P +L L
Sbjct: 85 WCQVAAARTKS---TADKPH--VIGIDYLEMDAVPGAPVLL-MDFLDPQAPQKLAEALGG 138
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
D D+VLSDMA TG + DH L FA++ KPG L K + G +L
Sbjct: 139 DP-DIVLSDMAAPTTGHKRTDHIRTMHLCEVAADFALSVLKPGGHFLAKTFQGGAENELL 197
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V +KPP+SR S EL+LL + FKG+
Sbjct: 198 SMLKKNFRSVHHVKPPASRDESVELYLLAKDFKGR 232
>gi|262369449|ref|ZP_06062777.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
johnsonii SH046]
gi|381198192|ref|ZP_09905531.1| cell division protein [Acinetobacter lwoffii WJ10621]
gi|262315517|gb|EEY96556.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
johnsonii SH046]
Length = 216
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 119/209 (56%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ D +V+KA+KE YR R+A+KLLEI K +RPG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDHFVKKAQKEGYRARAAYKLLEIQEKYNIIRPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV G +L +D LP V + DF + ++ D+L+ IL K+D
Sbjct: 73 AGKLVGDRGLVVASD---ILEMDALP------DVTFLQGDFREQEVFDKLLNILDGRKVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G + +D L I FA P ++K++ G + + +
Sbjct: 124 VVISDMAPNTSGNKAVDQPRQIYLCELAIDFATKVLGPNGQFVVKVFQGTGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K +KP +SR+ S E+FL+G+G K
Sbjct: 184 DNFDVLKTVKPAASRARSKEVFLVGQGRK 212
>gi|398870587|ref|ZP_10625909.1| 23S rRNA methylase [Pseudomonas sp. GM74]
gi|398909502|ref|ZP_10654568.1| 23S rRNA methylase [Pseudomonas sp. GM49]
gi|398929653|ref|ZP_10664088.1| 23S rRNA methylase [Pseudomonas sp. GM48]
gi|426407611|ref|YP_007027710.1| ribosomal RNA large subunit methyltransferase [Pseudomonas sp. UW4]
gi|398166722|gb|EJM54814.1| 23S rRNA methylase [Pseudomonas sp. GM48]
gi|398187990|gb|EJM75312.1| 23S rRNA methylase [Pseudomonas sp. GM49]
gi|398207824|gb|EJM94567.1| 23S rRNA methylase [Pseudomonas sp. GM74]
gi|426265828|gb|AFY17905.1| ribosomal RNA large subunit methyltransferase [Pseudomonas sp. UW4]
Length = 210
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 125/214 (58%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+ F DP+V+ A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQEHFNDPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQGTLIASD---ILEMDSIP------DVTFIQGDFTEDAVLAQILDAVGNK 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + + KPG D LIKI+ G + +
Sbjct: 114 EVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLSTRVLKPGGDFLIKIFQGEGFDEFHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
S+ + + +V++ KP SSR S E +LLGRGF+G+
Sbjct: 174 SVRQQFEKVQMRKPTSSRDRSREQYLLGRGFRGR 207
>gi|398848248|ref|ZP_10605073.1| 23S rRNA methylase [Pseudomonas sp. GM84]
gi|398249064|gb|EJN34457.1| 23S rRNA methylase [Pseudomonas sp. GM84]
Length = 208
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F DP+V++A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 4 RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT + +++ + D
Sbjct: 64 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTDDAVLQQILEAVGDS 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G E+D L + A KPG D LIKI+ G +
Sbjct: 115 HVDLVISDMAPNMSGTPEVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDMYLK 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LLG+GFKG
Sbjct: 175 DVRTKFDKVQMRKPSSSRDRSREQYLLGKGFKG 207
>gi|325292005|ref|YP_004277869.1| cell division protein [Agrobacterium sp. H13-3]
gi|418408094|ref|ZP_12981411.1| cell division protein [Agrobacterium tumefaciens 5A]
gi|325059858|gb|ADY63549.1| cell division protein [Agrobacterium sp. H13-3]
gi|358006080|gb|EHJ98405.1| cell division protein [Agrobacterium tumefaciens 5A]
Length = 246
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 120/211 (56%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYVQ+AK E YR R+AFKLLEI+ K + L+ +++D GAAPGSWSQ+
Sbjct: 27 SSRRWLERHINDPYVQRAKLEGYRARAAFKLLEINDKHQILKGATRIIDLGAAPGSWSQI 86
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+ +S D + V ++D L I PI G +L + DF P D+L+ + D
Sbjct: 87 ASKVTDSTEDDIR-----VAAIDFLEIDPIPGVKIL-QLDFLDPTAPDQLMEAVGGTP-D 139
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG ++ DH L FAV G L K + G L + +
Sbjct: 140 LVLSDMAAPTTGHQKTDHIRTMHLCEVAADFAVQVLAEGGHFLAKTFQGGTEKALLDMLK 199
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + QV +KP SSRS S E+FLL + FKG+
Sbjct: 200 KNFKQVLHIKPASSRSESVEMFLLAKHFKGR 230
>gi|159184390|ref|NP_353643.2| cell division protein [Agrobacterium fabrum str. C58]
gi|81496462|sp|Q8UHR0.2|RLME_AGRT5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|159139703|gb|AAK86428.2| cell division protein [Agrobacterium fabrum str. C58]
Length = 246
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 120/211 (56%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYVQ+AK E YR R+AFKLLEI+ K + L+ +++D GAAPGSWSQ+
Sbjct: 27 SSRRWLERHINDPYVQRAKLEGYRARAAFKLLEINDKHQILKGATRIIDLGAAPGSWSQI 86
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+ +S D + V ++D L I PI G +L + DF P D+L+ + D
Sbjct: 87 ASKVTDSTEDDIR-----VAAIDFLEIDPIPGVKIL-QLDFLDPTAPDQLMEAVGGTP-D 139
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG ++ DH L FAV G L K + G L + +
Sbjct: 140 LVLSDMAAPTTGHQKTDHIRTMHLCEVAADFAVQVLAEGGHFLAKTFQGGTEKALLDMLK 199
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + QV +KP SSRS S E+FLL + FKG+
Sbjct: 200 KNFKQVLHIKPASSRSESVEMFLLAKHFKGR 230
>gi|398951739|ref|ZP_10674274.1| 23S rRNA methylase [Pseudomonas sp. GM33]
gi|398156027|gb|EJM44453.1| 23S rRNA methylase [Pseudomonas sp. GM33]
Length = 210
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 125/214 (58%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+ F DP+V+ A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQEHFNDPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQGTLIASD---ILEMDSIP------DVTFIQGDFTEDAVLAQILDAVGNK 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + + KPG D LIKI+ G + +
Sbjct: 114 EVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLSTRVLKPGGDFLIKIFQGEGFDEFHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
S+ + + +V++ KP SSR S E +LLGRGF+G+
Sbjct: 174 SVRQQFEKVQMRKPTSSRDRSREQYLLGRGFRGR 207
>gi|197104878|ref|YP_002130255.1| cell division protein FtsJ [Phenylobacterium zucineum HLK1]
gi|196478298|gb|ACG77826.1| cell division protein FtsJ [Phenylobacterium zucineum HLK1]
Length = 239
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 122/218 (55%), Gaps = 16/218 (7%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + S WL+RQ DP+ KA+ YR R+AFK+ EID + R G++V+D G APG
Sbjct: 31 KQRTPSQQAWLERQVNDPFAAKARALGYRSRAAFKISEIDDRFHLFRKGVRVVDLGLAPG 90
Query: 74 SWSQVAVKLVNSHGYDSKQPKGL--VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
W+QVA++ +G+ ++ VD LP+ P+ A +L + DFT P +L+ +
Sbjct: 91 GWTQVAIQ------------RGVTDIVGVDLLPVEPLPPAHIL-QMDFTDPACGPKLIEL 137
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L DVV+SDMAPN G RE DH I L A I FAV KPG + K + G
Sbjct: 138 LGGPP-DVVISDMAPNTIGHRETDHLRIVGLIEAAIDFAVEVLKPGGTFVAKAFQGGGTD 196
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
Q+ + + V+ +KP +SR S+E+FL+ GFKG+
Sbjct: 197 QIIAGLKTRFKDVRNIKPKASRQDSSEVFLVATGFKGR 234
>gi|427429963|ref|ZP_18919887.1| Ribosomal RNA large subunit methyltransferase J [Caenispirillum
salinarum AK4]
gi|425879342|gb|EKV28049.1| Ribosomal RNA large subunit methyltransferase J [Caenispirillum
salinarum AK4]
Length = 263
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 119/216 (55%), Gaps = 6/216 (2%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ +SS WL+RQ DPYV +A+ R R+AFKLLE+D + FL+PG KV+D GAAPG
Sbjct: 36 RGRKNSSTRWLQRQLNDPYVAEARALGLRSRAAFKLLELDDRFHFLKPGQKVVDLGAAPG 95
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAV VN+ K G V+ +D L + GA ++K DF PD D L L
Sbjct: 96 GWTQVAVDRVNAM----KPGGGTVVGLDILEWETVAGATCITK-DFNDPDAPDVLKAAL- 149
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DVVLSDMA TG DH I L FA PG + K++ G +L
Sbjct: 150 GGPADVVLSDMAAPTTGHPPTDHLRIMALLELAWDFAEDVLAPGGTFVCKVFQGGTEGEL 209
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ V+ KPP+SR S+E++++ GF+G+
Sbjct: 210 LTRMKSLCETVRHAKPPASRKESSEMYVIASGFRGR 245
>gi|229592644|ref|YP_002874763.1| cell division protein [Pseudomonas fluorescens SBW25]
gi|259494568|sp|C3K267.1|RLME_PSEFS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|229364510|emb|CAY52363.1| cell division protein [Pseudomonas fluorescens SBW25]
Length = 216
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+ F DPYV+KA+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQEHFNDPYVKKAQKDGYRSRASYKLLEIQDKDKLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V DFTQ + +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFVHGDFTQDTVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D L+K++ G + +
Sbjct: 114 QVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+I + + +V+ KP SSR S E +LL RGF+G
Sbjct: 174 NIRKLFDKVQTRKPDSSRDRSREQYLLCRGFRG 206
>gi|440739558|ref|ZP_20919069.1| 23S rRNA methyltransferase J [Pseudomonas fluorescens BRIP34879]
gi|447918363|ref|YP_007398931.1| 23S rRNA methyltransferase J [Pseudomonas poae RE*1-1-14]
gi|440379390|gb|ELQ15986.1| 23S rRNA methyltransferase J [Pseudomonas fluorescens BRIP34879]
gi|445202226|gb|AGE27435.1| 23S rRNA methyltransferase J [Pseudomonas poae RE*1-1-14]
Length = 216
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+ F DPYV+KA+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQEHFNDPYVKKAQKDGYRSRASYKLLEIQDKDKLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V DFTQ + ++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFVHGDFTQDSVLAEILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D L+K++ G + +
Sbjct: 114 QVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+I + + +V+ KP SSR S E +LL RGF+G
Sbjct: 174 NIRKLFDKVQTRKPDSSRDRSREQYLLCRGFRG 206
>gi|395785749|ref|ZP_10465477.1| ribosomal RNA large subunit methyltransferase E [Bartonella tamiae
Th239]
gi|423717356|ref|ZP_17691546.1| ribosomal RNA large subunit methyltransferase E [Bartonella tamiae
Th307]
gi|395424207|gb|EJF90394.1| ribosomal RNA large subunit methyltransferase E [Bartonella tamiae
Th239]
gi|395427571|gb|EJF93662.1| ribosomal RNA large subunit methyltransferase E [Bartonella tamiae
Th307]
Length = 242
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KLLEI+ + K L+ G ++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKIDGYRSRAAYKLLEINERYKLLKKGQNIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +V S + PK V+ +D L + P+ G V+L + DF + +L LK + D
Sbjct: 94 AAHIVGS---SDENPK--VVGIDYLHMDPLPG-VILLEMDFLDDEAPYQLTKALKGEP-D 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG R+ DH L FA++ KPG L K + G L ++
Sbjct: 147 LVLSDMAAPTTGHRQTDHIRTIYLCEVAADFAISVLKPGGHFLAKTFQGGAENALLTTLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V+ +KPP+SR+ S EL+LL R FKG+
Sbjct: 207 QNFKTVQHVKPPASRAESVELYLLARDFKGR 237
>gi|163867451|ref|YP_001608650.1| cell division protein ftsJ [Bartonella tribocorum CIP 105476]
gi|189044086|sp|A9IMA1.1|RLME_BART1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|161017097|emb|CAK00655.1| cell division protein ftsJ [Bartonella tribocorum CIP 105476]
Length = 242
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + KFL+ G KV+D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKVIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V S +++P V+ +D L + P+ V + + DF D +L+ L K D
Sbjct: 94 AERIVGS---SNEKPS--VVGIDYLHVDPLP-RVAMLEMDFLHADAPQKLIETL-GTKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L FA++ KPG L K + G L +
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTIYLCEVAADFALSVLKPGGHFLAKAFQGGAENTLLAILK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V +KPP+SRS S EL+LL FKGK
Sbjct: 207 QHFKKVYHVKPPASRSESVELYLLALEFKGK 237
>gi|26991402|ref|NP_746827.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida
KT2440]
gi|148549787|ref|YP_001269889.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida F1]
gi|386013922|ref|YP_005932199.1| ribosomal RNA large subunit methyltransferase E [Pseudomonas putida
BIRD-1]
gi|395445474|ref|YP_006385727.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida ND6]
gi|397693415|ref|YP_006531295.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas putida
DOT-T1E]
gi|421523915|ref|ZP_15970542.1| 23S rRNA methyltransferase J [Pseudomonas putida LS46]
gi|81439657|sp|Q88DV0.1|RLME_PSEPK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040322|sp|A5W995.1|RLME_PSEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|24986472|gb|AAN70291.1|AE016670_1 ribosomal RNA large subunit methyltransferase J [Pseudomonas putida
KT2440]
gi|148513845|gb|ABQ80705.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas putida F1]
gi|313500628|gb|ADR61994.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas putida
BIRD-1]
gi|388559471|gb|AFK68612.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida ND6]
gi|397330145|gb|AFO46504.1| Ribosomal RNA large subunit methyltransferase J [Pseudomonas putida
DOT-T1E]
gi|402752160|gb|EJX12667.1| 23S rRNA methyltransferase J [Pseudomonas putida LS46]
Length = 207
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F DP+V++A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 4 RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G +++ D L + I V + DFT ++ R++ + D
Sbjct: 64 SQVTSRLIGGQGR--------LIASDILEMDSI-ADVTFIQGDFTHDEVLQRILEAVGDS 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G +D L + A KPG D LIKI+ G +
Sbjct: 115 HVDLVISDMAPNMSGTPAVDIPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDVYLK 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LLGRGFKG
Sbjct: 175 DVRSKFDKVQMRKPSSSRDRSREQYLLGRGFKG 207
>gi|407938541|ref|YP_006854182.1| 23S rRNA methyltransferase J [Acidovorax sp. KKS102]
gi|407896335|gb|AFU45544.1| 23S rRNA methyltransferase J [Acidovorax sp. KKS102]
Length = 218
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 118/205 (57%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL D YV+ A+KE YR R+A+KL EID ++ ++PG V+D G+ PG+WSQ +
Sbjct: 14 WLNDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGYTVVDLGSTPGAWSQYLRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G + Q G ++++D LP+ PI+G L+ DF +P++ +RL L +DVV+S
Sbjct: 74 LSPSGAAAGQLNGAIIALDILPMEPIEGVTYLN-GDFREPEVLERLEQALDGRVVDVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D I L + FA + KP ++K++ G L + +
Sbjct: 133 DMAPNLSGIESADAARIAHLVELAVDFACNHLKPEGALVVKLFHGSGYSDLVTLFKQTFK 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK LKP +SR S+E FL+G G K
Sbjct: 193 VVKPLKPKASRDKSSETFLVGMGLK 217
>gi|167035711|ref|YP_001670942.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida GB-1]
gi|189040323|sp|B0KHY6.1|RLME_PSEPG RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|166862199|gb|ABZ00607.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida GB-1]
Length = 208
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F DP+V++A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 4 RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G +++ D L + I V + DFT ++ R++ + D
Sbjct: 64 SQVTSRLIGGQGR--------LIASDILEMDSI-ADVTFIQGDFTHDEVLQRILEAVGDS 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G +D L + A KPG D LIKI+ G +
Sbjct: 115 HVDLVISDMAPNMSGTPAVDIPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDVYLK 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LLGRGFKG
Sbjct: 175 DVRSKFDKVQMRKPSSSRDRSREQYLLGRGFKG 207
>gi|409396347|ref|ZP_11247350.1| 23S rRNA methyltransferase J [Pseudomonas sp. Chol1]
gi|409119124|gb|EKM95511.1| 23S rRNA methyltransferase J [Pseudomonas sp. Chol1]
Length = 210
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 124/213 (58%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+++ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSPRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ KG +++ D LP+ I V + DFT+ ++ +++ + +
Sbjct: 63 SQVTSRVIGD--------KGRLIASDILPMDSI-ADVTFIQGDFTEDEVFAQILEAIGEH 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G +
Sbjct: 114 PVDLVISDMAPNMSGVRASDQPRAMFLCELALDLATRVLRPGGDFLIKIFQGEGFDAYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + +V++ KP SSR S E +LL RGFKG
Sbjct: 174 DVRQNFDKVQMRKPLSSRDRSREQYLLARGFKG 206
>gi|157964230|ref|YP_001499054.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
massiliae MTU5]
gi|157844006|gb|ABV84507.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia
massiliae MTU5]
Length = 272
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 116/213 (54%), Gaps = 4/213 (1%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ K + SS WL+RQ DPYV KA+ + +R R+A+KLLEI K K P +K++D GA
Sbjct: 60 KTSKKRTVSSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGA 119
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG WSQVA KL+ + + ++S+D L I P+ G K DF + D ++ ++
Sbjct: 120 APGGWSQVASKLIKASDNNLNNK---IISIDVLEIEPVAGVEFFQK-DFFEADTEELIIQ 175
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L + D+V+SDMA N G + DH L FA+ KP + KI+ G
Sbjct: 176 ALDGSRADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAE 235
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+L + R + VK KP SSRS S E++L+
Sbjct: 236 NELLNKVKREFKTVKHFKPSSSRSESTEIYLVA 268
>gi|395778792|ref|ZP_10459304.1| ribosomal RNA large subunit methyltransferase E [Bartonella
elizabethae Re6043vi]
gi|423714894|ref|ZP_17689118.1| ribosomal RNA large subunit methyltransferase E [Bartonella
elizabethae F9251]
gi|395418000|gb|EJF84337.1| ribosomal RNA large subunit methyltransferase E [Bartonella
elizabethae Re6043vi]
gi|395430378|gb|EJF96420.1| ribosomal RNA large subunit methyltransferase E [Bartonella
elizabethae F9251]
Length = 240
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+E++ + KFL+ G KV+D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEMNERYKFLKKGQKVIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V S ++P V+ +D L + P+ V + + DF D +L+ L K D
Sbjct: 94 AERIVGS---SDEKPS--VVGIDYLHVDPLP-RVAMLEMDFLHADAPQKLIETL-GTKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L FA++ KPG L K + G L ++
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTIYLCEVAADFALSVLKPGGHFLAKAFQGGAENTLLATLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V +KPP+SRS S EL+LL FKGK
Sbjct: 207 QHFKKVYHVKPPASRSESVELYLLALEFKGK 237
>gi|379713278|ref|YP_005301616.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
massiliae str. AZT80]
gi|376333924|gb|AFB31156.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
massiliae str. AZT80]
Length = 227
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 120/215 (55%), Gaps = 9/215 (4%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ K + SS WL+RQ DPYV KA+ + +R R+A+KLLEI K K P +K++D GA
Sbjct: 16 KTSKKRTVSSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGA 75
Query: 71 APGSWSQVAVKLVNS--HGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRL 128
APG WSQVA KL+ + + +SK ++S+D L I P+ G K DF + D ++ +
Sbjct: 76 APGGWSQVASKLIKASDNNLNSK-----IISIDVLEIEPVAGVEFFQK-DFFEADTEELI 129
Query: 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188
+ L D + D+V+SDMA N G + DH L FA+ KP + KI+ G
Sbjct: 130 IQAL-DGRADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGG 188
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+L + R + VK KP SSRS S E++L+
Sbjct: 189 AENELLNKVKREFKTVKHFKPSSSRSESTEIYLVA 223
>gi|451940316|ref|YP_007460954.1| cell division protein ftsJ [Bartonella australis Aust/NH1]
gi|451899703|gb|AGF74166.1| cell division protein ftsJ [Bartonella australis Aust/NH1]
Length = 242
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EID + K + G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKIDGYRSRAAYKLIEIDERYKIFKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +V S ++P V+ +D L + P+ G V+L + DF + L+ L K D
Sbjct: 94 AACIVGS---SDQKPS--VVGIDYLHVDPLPGVVML-EMDFLHENAPQELMRAL-GTKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG R+ DH L A FA++ KPG L K + G L ++
Sbjct: 147 IVLSDMAAPTTGHRQTDHLRTIYLCEAAADFAISVLKPGGHFLTKTFQGGAENILLTTLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V+ +KPP+SR+ SAEL+LL FKGK
Sbjct: 207 QNFKTVRHVKPPASRAESAELYLLALQFKGK 237
>gi|399041917|ref|ZP_10736846.1| 23S rRNA methylase [Rhizobium sp. CF122]
gi|398059780|gb|EJL51624.1| 23S rRNA methylase [Rhizobium sp. CF122]
Length = 239
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 122/227 (53%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K L+
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEIDEKHNILKGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTGSTDEDIR-----VAAIDFLEMTQLPGVKIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+L+ + D+V+SDMA TG DH L FAV G L
Sbjct: 125 SAPAQLIEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G +L + R + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERELLNMLKRHFKQVVHVKPASSRAESVEMFLLAKGFKGR 230
>gi|419954429|ref|ZP_14470567.1| 23S rRNA methyltransferase J [Pseudomonas stutzeri TS44]
gi|387968762|gb|EIK53049.1| 23S rRNA methyltransferase J [Pseudomonas stutzeri TS44]
Length = 212
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+K+ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSPRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ KG +++ D LP+ I V + DFT+ + +++ + +
Sbjct: 63 SQVTSRVIGD--------KGRLIASDILPMDSI-ADVTFIQGDFTEDAVFAQILDAIGEH 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G +
Sbjct: 114 PVDLVISDMAPNMSGVRASDQPRAMFLCELALDLATRVLRPGGDFLIKIFQGEGFDAYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +V++ KP SSR S E +LL RGFKG+
Sbjct: 174 DVRQNFDKVQMRKPLSSRDRSREQYLLARGFKGQ 207
>gi|110772930|ref|XP_001123010.1| PREDICTED: ribosomal RNA large subunit methyltransferase E-like,
partial [Apis mellifera]
Length = 225
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 122/215 (56%), Gaps = 12/215 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ S WL RQ DPYV+ A++ +R R+A+KL+E++ K FL+ G+KV+D GAAPG
Sbjct: 16 KGRSTSQQRWLTRQLNDPYVKAAQQHGWRSRAAYKLIELNDKFHFLKKGIKVVDLGAAPG 75
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAV S V+ +D L + P+ GA + + DFT+P + L+ L
Sbjct: 76 GWSQVAVYHKASK----------VVGIDLLQVEPVMGADIF-QGDFTEPHNLEVLLDKL- 123
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ K D+V+SDMAPN TG DH I L + FA+ + K++ G + +
Sbjct: 124 EGKADLVMSDMAPNTTGHAATDHIRIVNLTEQALDFAIKILNLNGVFIAKVFQGGSEKLM 183
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ R + VK KPP+SR S EL+++ GFKG
Sbjct: 184 LNNLKRSFKIVKHAKPPASRKESRELYVIATGFKG 218
>gi|440732880|ref|ZP_20912673.1| 23S rRNA methyltransferase J [Xanthomonas translucens DAR61454]
gi|440366054|gb|ELQ03140.1| 23S rRNA methyltransferase J [Xanthomonas translucens DAR61454]
Length = 210
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 123/210 (58%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ FADP+V+KA+ E R R+A+KL E+ + K L+P + V+D GAAPG W
Sbjct: 4 RSKSSQRWLREHFADPFVKKAQAEGMRSRAAYKLEELLQRDKLLKPDMLVVDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K + +G VL++D L + P+ G L DF + ++ + T+L D+
Sbjct: 64 SQQVRKSLGE--------RGRVLALDILEMPPLAGVEFLH-GDFREEEVLSQFETMLGDN 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+VLSDMAPN +GM +D + LA + FA ++ KPG LIK++ G
Sbjct: 115 RVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMAFADSHLKPGGAFLIKLFQGVGSDDYIR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E+++LG+G
Sbjct: 175 QMRRRYEKVSIRKPAASRKRSPEVYVLGQG 204
>gi|405379618|ref|ZP_11033466.1| 23S rRNA methylase [Rhizobium sp. CF142]
gi|397323866|gb|EJJ28256.1| 23S rRNA methylase [Rhizobium sp. CF142]
Length = 239
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/229 (39%), Positives = 123/229 (53%), Gaps = 9/229 (3%)
Query: 3 STTGPKLKEVPKGKD--HSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLR 60
S TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K L+
Sbjct: 9 SRTGRKLGQRVKKKKLKASSRQWLERHINDPYVQRAQLEGYRARAAFKLLEIDEKYNILK 68
Query: 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFT 120
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF
Sbjct: 69 GARRIIDLGAAPGSWSQIAAKVTGSTDEDIR-----VAAIDFLEMTQLPGVTIL-QLDFL 122
Query: 121 QPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADC 180
P ++L+ + D+V+SDMA TG DH L FAV G
Sbjct: 123 DPTAPEKLMAAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGHF 181
Query: 181 LIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
L K + G L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 182 LAKTFQGGTERDLLAMLKQHFRQVVHVKPASSRAESVEMFLLAKGFKGR 230
>gi|402758201|ref|ZP_10860457.1| 23S rRNA methyltransferase J [Acinetobacter sp. NCTC 7422]
Length = 216
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ D +V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDHFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV ++G +L++D LP V + DF + ++ ++L+ IL ++D
Sbjct: 73 AGKLVGANGLVIASD---ILAMDALP------DVTFLQGDFREEEVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 VVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFIVKVFQGSGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLIGQGRK 212
>gi|389714639|ref|ZP_10187213.1| 23S rRNA methyltransferase J [Acinetobacter sp. HA]
gi|388609774|gb|EIM38920.1| 23S rRNA methyltransferase J [Acinetobacter sp. HA]
Length = 216
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 123/209 (58%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ D YV+KA+KE YR R+A+KLLEI K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDFYVKKAQKEGYRARAAYKLLEIQEKYGIIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D L + + L + DF + ++ D+L+ IL +D
Sbjct: 73 AGKLVGS--------KGLVIASDILEMDALPDVTFL-QGDFREQEVFDKLLNILDGRTVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G + +D L + FA P ++K++ G + + +
Sbjct: 124 VVISDMAPNTSGNKAVDQPRQIYLCELALDFANKVLGPKGQFIVKVFQGTGFDEFRKEVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ +K +KP +SR+ S E+FL+G+G K
Sbjct: 184 NSFNVLKTVKPAASRARSKEVFLVGQGRK 212
>gi|417858960|ref|ZP_12504017.1| cell division protein [Agrobacterium tumefaciens F2]
gi|338824964|gb|EGP58931.1| cell division protein [Agrobacterium tumefaciens F2]
Length = 246
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 120/211 (56%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYVQ+AK E YR R+AFKLLEI+ K + L+ +++D GAAPGSWSQ+
Sbjct: 27 SSRRWLERHINDPYVQRAKLEGYRARAAFKLLEINDKHQILKGATRIIDLGAAPGSWSQI 86
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+ +S D + V ++D L I PI G +L + DF P ++L+ + D
Sbjct: 87 ASKVTDSTEDDIR-----VAAIDFLEIDPIPGVKIL-QLDFLDPSAPEKLMEAVGGTP-D 139
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG ++ DH L FAV G L K + G L + +
Sbjct: 140 LVLSDMAAPTTGHQKTDHIRTMHLCEVAADFAVQVLAEGGHFLAKTFQGGTEKALLDMLK 199
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + QV +KP SSRS S E+FLL + FKG+
Sbjct: 200 KNFKQVLHIKPASSRSESVEMFLLAKHFKGR 230
>gi|384261206|ref|YP_005416392.1| Ribosomal RNA large subunit methyltransferase J [Rhodospirillum
photometricum DSM 122]
gi|378402306|emb|CCG07422.1| Ribosomal RNA large subunit methyltransferase J [Rhodospirillum
photometricum DSM 122]
Length = 251
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 123/214 (57%), Gaps = 6/214 (2%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SS WL+RQ DPYVQ+AK+ R R+AFK++E+D + LRPGL+V+D GAAPG W
Sbjct: 37 RSNSSTQWLQRQLNDPYVQEAKRRGLRSRAAFKIMELDDRFHLLRPGLRVVDLGAAPGGW 96
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+QV V+ + D +G V+ +D LP + GA L+ DFT D D L T L +
Sbjct: 97 TQVVVE--RTRLLDGG--RGCVVGIDILPWEGVAGAHCLTH-DFTADDAPDLLKTAL-NG 150
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+VLSDMA TG R+ DH + LA FA + PG K++ G L
Sbjct: 151 PADLVLSDMAAPTTGHRKTDHLRVMALAEMAWDFAESVLAPGGAFCCKVFQGGTEGALLA 210
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V+ KP SSR+ S E++++ +GF+G+
Sbjct: 211 RMKQLCESVRHAKPASSRAESPEVYVIAQGFRGR 244
>gi|296283049|ref|ZP_06861047.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Citromicrobium
bathyomarinum JL354]
Length = 226
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 120/215 (55%), Gaps = 11/215 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS+ WL+RQ DPYV++AK YR R+AFKL+E+D K LR +++D G APG
Sbjct: 16 RGRTASSNRWLERQLNDPYVREAKAAGYRSRAAFKLIELDEKFGILRGAERIVDLGIAPG 75
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ+A K K+P+ ++ +D LP P+DG +L + DF + + ++ L
Sbjct: 76 GWSQIAQK---------KRPQATIVGIDLLPTEPLDGVTIL-EMDFMADEAPETIMGHLG 125
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMA N G ++ DH L FA+ PG L K+ G QL
Sbjct: 126 GPP-DLVMSDMAANTVGHKQTDHLRTMGLVETAADFAIQTLAPGGQFLAKVLAGGTDAQL 184
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + VK KPP+SR S+E +++ +GFKG
Sbjct: 185 LALLKKNFKTVKHAKPPASRKGSSEWYVVAQGFKG 219
>gi|330807476|ref|YP_004351938.1| ribosomal RNA large subunit methyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|378948800|ref|YP_005206288.1| protein FtsJ [Pseudomonas fluorescens F113]
gi|423093465|ref|ZP_17081261.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens Q2-87]
gi|423695288|ref|ZP_17669778.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens Q8r1-96]
gi|327375584|gb|AEA66934.1| Ribosomal RNA large subunit methyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|359758814|gb|AEV60893.1| FtsJ [Pseudomonas fluorescens F113]
gi|388008534|gb|EIK69785.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens Q8r1-96]
gi|397889135|gb|EJL05618.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens Q2-87]
Length = 210
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+ F DP+V+ A+K+ YR R+++KLLEI + + +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQEHFNDPFVKMAQKDGYRSRASYKLLEIQERDRLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQGTLIASD---ILEMDSIP------DVTFIQGDFTEDAVLAQILEAVGKN 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A KPG D LIK++ G + +
Sbjct: 114 EVDLVISDMAPNMSGLASVDMPRSMFLCELALDLATRVLKPGGDFLIKVFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
S+ + + +V KP SSR S E +LLGRGF+G+
Sbjct: 174 SVRKQFEKVTTRKPKSSRDRSREQYLLGRGFRGR 207
>gi|358449512|ref|ZP_09159996.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter
manganoxydans MnI7-9]
gi|357226267|gb|EHJ04748.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter
manganoxydans MnI7-9]
Length = 206
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 124/213 (58%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS+ WL+ DP+V++A+ + YR R+++KLLEI+ K + + P + V+D G+APG W
Sbjct: 3 RSKSSNRWLEEHVNDPFVKQAQVDGYRSRASYKLLEINKKDRLIHPNMVVVDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KLV KG V++ D LP+ I G V + DFT+ D+ + ++ L D
Sbjct: 63 SQVAAKLVGH--------KGRVIASDILPMDAIAG-VDFIQGDFTENDVFESIMATLGGD 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+DVV+SDMAPN +G+ D L + A KP L K++ G + +
Sbjct: 114 PVDVVISDMAPNISGVTVADQAASMYLVELALDMASQVLKPKGSFLAKVFQGEGYDEYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
S+ + +V + KP SSRS S E+++LG+GFKG
Sbjct: 174 SVRAVFDKVVVRKPDSSRSRSREVYILGKGFKG 206
>gi|56551298|ref|YP_162137.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
mobilis ZM4]
gi|260753080|ref|YP_003225973.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|384411860|ref|YP_005621225.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|397676729|ref|YP_006518267.1| ribosomal RNA large subunit methyltransferase E [Zymomonas mobilis
subsp. mobilis ATCC 29191]
gi|81355445|sp|Q5NQH8.1|RLME_ZYMMO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|56542872|gb|AAV89026.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
mobilis ZM4]
gi|258552443|gb|ACV75389.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|335932234|gb|AEH62774.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|395397418|gb|AFN56745.1| Ribosomal RNA large subunit methyltransferase E [Zymomonas mobilis
subsp. mobilis ATCC 29191]
Length = 221
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 123/228 (53%), Gaps = 11/228 (4%)
Query: 2 ISTTGPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
+ T G + + + + +S WL+RQ DPYVQKA+ E YR R+AFKL+E+D + L+
Sbjct: 1 MKTPGHQRVKTARRRTAASTRWLERQLNDPYVQKAQAEGYRSRAAFKLIELDERFSLLKN 60
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
+++D G APG WSQVA K K P+ ++ +D L PI+G V + + DFT
Sbjct: 61 ARRIIDLGIAPGGWSQVARK---------KAPQAKIVGIDLLEAAPIEG-VTIFQNDFTD 110
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
P+ Q +L+ L D+VLSDMA N G + DH L FA + G +
Sbjct: 111 PEAQKKLIEAL-GGAADLVLSDMAANTIGHAQTDHLRTMALVEEAAVFASETLREGGSFV 169
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K+ G L + R + QVK KPP+SR S+E +++ + F+G+
Sbjct: 170 AKVLAGGADKDLVALLKRLFGQVKHAKPPASRRESSEWYVIAQNFRGE 217
>gi|326386107|ref|ZP_08207731.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209332|gb|EGD60125.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium
nitrogenifigens DSM 19370]
Length = 225
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 124/224 (55%), Gaps = 12/224 (5%)
Query: 6 GPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
G +L+ K + SS WL RQ DPYVQKA+ E +R R+AFK++E+D K L+ +V
Sbjct: 9 GTRLRTAKK-RTASSARWLTRQLNDPYVQKARAEGWRSRAAFKMIELDEKFALLKGARRV 67
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
+D G APG WSQV + + P V+ +D LP PI+G V + + DF +
Sbjct: 68 VDLGIAPGGWSQVVRQ---------RAPLAKVVGIDLLPTDPIEG-VTIFQMDFMADEAP 117
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ L L D D+V+SDMA N G ++ DH L + FA+T+ PG + K++
Sbjct: 118 EALTGAL-DGPPDLVISDMAANTVGHKQTDHLRTMGLVETAVDFAITHLAPGGAFVAKVF 176
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
G L + R ++ VK KPP+SR S+E +++ +GFKGK
Sbjct: 177 AGGTDTTLLNLLKRNFTTVKHAKPPASRKDSSEWYVIAQGFKGK 220
>gi|383481147|ref|YP_005390062.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
rhipicephali str. 3-7-female6-CWPP]
gi|378933486|gb|AFC71989.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
rhipicephali str. 3-7-female6-CWPP]
Length = 227
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 117/213 (54%), Gaps = 5/213 (2%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ K + SS WL+RQ DPYV KA+ + +R R+A+KLLEI K K P +K++D GA
Sbjct: 16 KTSKKRTVSSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGA 75
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG WSQVA KL+ + + ++S+D L I P+ G K DF + D ++ ++
Sbjct: 76 APGGWSQVASKLIKASDNNLNNK---IISIDVLEIEPVAGVEFFQK-DFFEADTEELIIQ 131
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L D + D+V+SDMA N G + DH L FA+ KP + KI+ G
Sbjct: 132 AL-DGRADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAE 190
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+L + R + VK KP SSRS S E++L+
Sbjct: 191 NELLNKVKREFKTVKHFKPSSSRSESTEIYLVA 223
>gi|222084954|ref|YP_002543483.1| cell division protein [Agrobacterium radiobacter K84]
gi|398381254|ref|ZP_10539364.1| 23S rRNA methylase [Rhizobium sp. AP16]
gi|254809544|sp|B9J9U0.1|RLME_AGRRK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|221722402|gb|ACM25558.1| cell division protein [Agrobacterium radiobacter K84]
gi|397719559|gb|EJK80126.1| 23S rRNA methylase [Rhizobium sp. AP16]
Length = 239
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 123/227 (54%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKD--HSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL R DPYVQ+A+ E YR R+AFKLLEID K + L+
Sbjct: 11 TGRKLGQRVKKKKLKASSREWLHRHINDPYVQRAQLEGYRARAAFKLLEIDEKHQILKGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTGSTEDDIR-----VAAIDFLEMAHLPGVTIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
D RLV + + D+V+SDMA TG DH L FA+ G L
Sbjct: 125 DAPQRLVDAVGGEP-DLVMSDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLAEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP +SR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLNLLKQNFRQVVHVKPGASRAESVEMFLLAKGFKGR 230
>gi|409422615|ref|ZP_11259706.1| 23S rRNA methyltransferase J [Pseudomonas sp. HYS]
Length = 207
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+KA+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLGWLKEHFNDPYVKKAQKDGYRSRASYKLLEIQEKYRIIRPGMSVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFTQ ++ +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTQDEVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G +D L + A KPG D LIKI+ G +
Sbjct: 114 HVDLVISDMAPNMSGTPAVDIPKAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDVYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V++LKP SSR S E +LL RG++G+
Sbjct: 174 DARQKFDKVQMLKPDSSRDRSREQYLLARGYRGE 207
>gi|424888511|ref|ZP_18312114.1| 23S rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393174060|gb|EJC74104.1| 23S rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 239
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 123/227 (54%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K LR
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 KRIIDLGAAPGSWSQIAAKVTGSTDEDIR-----VAAIDFLEMTQLPGVRIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+RL+ + D+V+SDMA TG DH L FA+ G L
Sbjct: 125 SAPERLLEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGHFLT 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G +L + + + QV +KP +SR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERELLAMLKQNFRQVVHVKPNASRAESVEMFLLAKGFKGR 230
>gi|146308631|ref|YP_001189096.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
ymp]
gi|189040321|sp|A4XYE8.1|RLME_PSEMY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|145576832|gb|ABP86364.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas mendocina ymp]
Length = 207
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 119/213 (55%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+K+ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSQRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ G + +L +D +P V + DFT + R++ + ++
Sbjct: 63 SQVTSRVIGDKG---RLIASDILEMDSIP------DVTFIQGDFTDDAVFARILEAIGEN 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G
Sbjct: 114 PVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDTYHR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 QVRDSFDKVQMRKPLSSRDRSREQYLLARGFRG 206
>gi|359790896|ref|ZP_09293772.1| cell division protein ftsJ [Mesorhizobium alhagi CCNWXJ12-2]
gi|359253120|gb|EHK56291.1| cell division protein ftsJ [Mesorhizobium alhagi CCNWXJ12-2]
Length = 233
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 117/215 (54%), Gaps = 7/215 (3%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G SS WL+R DPYVQ++K YR R+A+KL+EID K L+PG++V+D GAAPG
Sbjct: 25 GLKESSRRWLERHMNDPYVQRSKAAGYRSRAAYKLIEIDDKHHLLKPGMRVIDLGAAPGG 84
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W QVA S + P V+ +D L + + GA VL DF D ++L L
Sbjct: 85 WCQVAAARTKS---TPEHPN--VVGIDYLEMDAVPGAPVLL-MDFLDEDAPEKLAEALGG 138
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
D+V+SDMA TG R+ DH L FAV+ KPG L K + G +
Sbjct: 139 PP-DIVMSDMAAPTTGHRQTDHIRTMHLCEVAADFAVSVLKPGGHFLAKTFQGGTENSVL 197
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V +KPP+SR SAEL+LL + FKG+
Sbjct: 198 TMLKQNFRSVHHVKPPASREESAELYLLAKDFKGR 232
>gi|402490193|ref|ZP_10836982.1| 23S rRNA methyltransferase J [Rhizobium sp. CCGE 510]
gi|401810219|gb|EJT02592.1| 23S rRNA methyltransferase J [Rhizobium sp. CCGE 510]
Length = 239
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 123/227 (54%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K LR
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 KRIIDLGAAPGSWSQIAAKVTGSTDEDIR-----VAAIDFLEMTQLPGVKIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L+ + D+V+SDMA TG DH L FAV G L
Sbjct: 125 SAPEKLLEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGHFLT 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G +L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KSFQGGTERELLAMLKQHFRQVVHVKPNSSRAESVEMFLLAKGFKGR 230
>gi|384219542|ref|YP_005610708.1| cell division protein [Bradyrhizobium japonicum USDA 6]
gi|354958441|dbj|BAL11120.1| cell division protein [Bradyrhizobium japonicum USDA 6]
Length = 230
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 124/227 (54%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV KAK YR R+AFKLLEID K + L+
Sbjct: 5 TTGRLHVQVKTGGKRKLSSKLWLERQLNDPYVVKAKALGYRSRAAFKLLEIDEKYRLLKH 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A K V S KG V+++D L + I G V ++ DF
Sbjct: 65 GMAVVDLGAAPGGWSQIAAKRVG-----SVDGKGKVVAIDLLDMPEIAG-VDFAQLDFMD 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
D +L +L D+V+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 NDAPAKLTAMLGGGA-DIVMSDMAANTTGHRKTDQLRIVGLIETAAAFACDVLKPGGAFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + L + R ++ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKTFQSGADADLLAQLKRDFATVRHVKPAASRQDSSERYVLATGFRG 224
>gi|421502068|ref|ZP_15949024.1| 23S rRNA methyltransferase J [Pseudomonas mendocina DLHK]
gi|400347352|gb|EJO95706.1| 23S rRNA methyltransferase J [Pseudomonas mendocina DLHK]
Length = 207
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 119/213 (55%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+K+ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSQRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ G + +L +D +P V + DFT + R++ + ++
Sbjct: 63 SQVTSRVIGDKG---RLIASDILEMDSIP------DVTFIQGDFTDDAVFARILEAIGEN 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G
Sbjct: 114 PVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDTYHR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 QVRDSFDKVQMRKPLSSRDRSREQYLLARGFRG 206
>gi|357976399|ref|ZP_09140370.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas sp. KC8]
Length = 241
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 117/216 (54%), Gaps = 11/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL RQ DPYV++AK E YR R+A+KL+E+D + L+ +V+D G APG
Sbjct: 26 RGRTASSTRWLARQLNDPYVRRAKAEGYRSRAAYKLIELDERFHLLKGVSRVIDLGIAPG 85
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQV + PK ++ +D LP+ PIDG V + + DF D L L
Sbjct: 86 GWSQVVRRTA---------PKAAIVGIDLLPVDPIDG-VTIFQMDFMDDAAPDLLTEALG 135
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K D+VLSDMA N TG + DH L FA +PG + K+ G L
Sbjct: 136 -GKADLVLSDMAANTTGHPQTDHLRTMALVETGCAFAADILRPGGAYVAKVLAGGADNDL 194
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ VK KPP+SR S+E +++ +GFKG+
Sbjct: 195 VAELKRLFTTVKHAKPPASRKDSSEWYVIAQGFKGR 230
>gi|404400427|ref|ZP_10992011.1| 23S rRNA methyltransferase J [Pseudomonas fuscovaginae UPB0736]
Length = 209
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DP+V+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSQNWLKEHFNDPFVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V K DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGKG---RLIASDILDMDSIP------DVTFIKGDFTEDAVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G +D L + A +PG D LIKI+ G + +
Sbjct: 114 EVDLVISDMAPNMSGTPAVDMPRSMFLCELALDLAGRVLRPGGDFLIKIFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +V+ KP SSR S E +LLGRGF+G+
Sbjct: 174 NFRKQFDKVQTRKPVSSRDRSREQYLLGRGFRGR 207
>gi|304391240|ref|ZP_07373184.1| ribosomal RNA large subunit methyltransferase J [Ahrensia sp.
R2A130]
gi|303296596|gb|EFL90952.1| ribosomal RNA large subunit methyltransferase J [Ahrensia sp.
R2A130]
Length = 246
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 117/210 (55%), Gaps = 6/210 (2%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS LWL+RQ DPYVQKA+ E Y R+A+KL+E++ + L+PG +V+D GAAPG
Sbjct: 38 RGRKLSSTLWLQRQLNDPYVQKARAEGYASRAAYKLIEMNDRYNILKPGYRVVDLGAAPG 97
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVA + V S D + V+ +D L + P+ GA ++ K DF D D L L
Sbjct: 98 GWCQVAAREVGSSIDDIR-----VVGIDYLDMDPVPGATIIKK-DFLDDDAPDMLREALG 151
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+D+V+SDMA G R+ DH L FA+ KPG L K + G L
Sbjct: 152 GHPIDLVMSDMAAPTIGHRKTDHMRTMALVEVAFDFALEVVKPGGHFLTKTFQGGTEQAL 211
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLG 223
+ + + + + +KPP+SR S EL+LL
Sbjct: 212 LDLMKKNFKSIHHVKPPASRDGSVELYLLA 241
>gi|424794854|ref|ZP_18220776.1| Cell division protein FtsJ [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422795732|gb|EKU24367.1| Cell division protein FtsJ [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 219
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 122/210 (58%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ FADP+V+KA+ E R R+A+KL E+ + K L+P + V+D GAAPG W
Sbjct: 13 RSKSSQRWLREHFADPFVKKAQAEGMRSRAAYKLEELLQRDKLLKPDMLVVDLGAAPGGW 72
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K + +G VL++D L + P+ G L DF + ++ + +L D+
Sbjct: 73 SQQVRKSLGE--------RGRVLALDILEMPPLAGVEFLH-GDFREEEVLSQFEAMLGDN 123
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+VLSDMAPN +GM +D + LA + FA T+ KPG LIK++ G
Sbjct: 124 RVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMAFADTHLKPGGAFLIKLFQGVGSDDYIR 183
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E+++LG+G
Sbjct: 184 QMRRRYEKVSIRKPAASRRRSPEVYVLGQG 213
>gi|422637918|ref|ZP_16701350.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae Cit
7]
gi|330950314|gb|EGH50574.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae Cit
7]
Length = 216
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F D YV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAA G W
Sbjct: 3 RSKTSHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAARGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ I ++++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAILEQILEAVGNT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIK++ G +
Sbjct: 114 QVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 DIRKLFDKVQMRKPSSSRDRSREQYLLARGFRG 206
>gi|240849823|ref|YP_002971211.1| cell division protein FtsJ [Bartonella grahamii as4aup]
gi|240266946|gb|ACS50534.1| cell division protein FtsJ [Bartonella grahamii as4aup]
Length = 242
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 119/211 (56%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + +FL+ G KV+D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYRFLKKGQKVIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V S D V+ +D L + P+ V + + DF D +L+ L K D
Sbjct: 94 AERIVGSSDEDPS-----VVGIDYLHVDPLP-RVAMLEMDFLHTDAPQKLIETL-GTKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L FA++ KPG L K + G L +
Sbjct: 147 VVLSDMASPTTGHRQTDHLRTIYLCEVAADFALSVLKPGGHFLAKAFQGGAENTLLTILK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V +KPP+SRS S EL+LL FKGK
Sbjct: 207 QHFKKVYHVKPPASRSESVELYLLALEFKGK 237
>gi|409436194|ref|ZP_11263386.1| 23S rRNA methyltransferase [Rhizobium mesoamericanum STM3625]
gi|408752104|emb|CCM74536.1| 23S rRNA methyltransferase [Rhizobium mesoamericanum STM3625]
Length = 239
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 119/227 (52%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K L+
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEIDEKHNILKGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + L +D+LP V + + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTGSTDEDIRVAAIDFLEMDQLP------GVKILQLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+L+ + D+V+SDMA TG DH L FAV G L
Sbjct: 125 SAPAQLIEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + R + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLNMLKRHFKQVVHVKPASSRAESVEMFLLAKGFKGR 230
>gi|365096706|ref|ZP_09331149.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax sp. NO-1]
gi|363413732|gb|EHL20924.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax sp. NO-1]
Length = 220
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 119/205 (58%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL D YV+ A+KE YR R+A+KL EID ++ ++PG V+D G+ PG+WSQ +
Sbjct: 14 WLNDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGYTVVDLGSTPGAWSQYLRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G S Q G+++++D LP+ PI+G ++ DF +P++ + L L+ +DVV+S
Sbjct: 74 MSPAGAASGQLNGVIIALDILPMEPIEGVTYIN-GDFREPEVLEHLEQALEGRVVDVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D I L + FA + KP ++K++ G L + +
Sbjct: 133 DMAPNLSGIESADAARIAHLVELAVDFACNHLKPDGALVVKLFHGSGYSDLVTLFKQTFK 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK LKP +SR S+E FL+G G +
Sbjct: 193 VVKPLKPKASRDKSSETFLVGMGLR 217
>gi|329850827|ref|ZP_08265672.1| ftsJ-like methyltransferase family protein [Asticcacaulis
biprosthecum C19]
gi|328841142|gb|EGF90713.1| ftsJ-like methyltransferase family protein [Asticcacaulis
biprosthecum C19]
Length = 226
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 12/213 (5%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+RQ DPYVQ+AK E +R R+AFKL+EID + L+ G +V+D G APG W
Sbjct: 26 RTQSSAKWLERQLNDPYVQQAKAEGWRSRAAFKLIEIDERFHLLKRGSRVIDLGCAPGGW 85
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
QVA K +H V+ VD LP+ P+ GA +L + DFT P I +L+ ++
Sbjct: 86 VQVAKKRGAAH----------VVGVDLLPVDPVPGADIL-EADFTDPAIGPQLIELM-GG 133
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K D+VLSD+A N G ++ DH I L FA+ KPG + K + G +L
Sbjct: 134 KPDIVLSDLAHNTVGHKQTDHLKIMGLLEMAGDFALENLKPGGAFVAKAFQGGETEELLL 193
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VK +KP SSR+ S E++++ GF+G
Sbjct: 194 KLKLAFDVVKHMKPKSSRAGSTEIYIVATGFRG 226
>gi|319899272|ref|YP_004159365.1| cell division protein ftsJ [Bartonella clarridgeiae 73]
gi|319403236|emb|CBI76795.1| cell division protein ftsJ [Bartonella clarridgeiae 73]
Length = 238
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 119/210 (56%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR RSA+KL+EID + K + G K++D GAAPG W QV
Sbjct: 32 SSRRWLERHLNDPYVHQSKVDGYRSRSAYKLIEIDERYKIFKKGQKIIDLGAAPGGWCQV 91
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +H +S K V+ +D LP+ P+ G VVL + DF + +L+ L ++ D
Sbjct: 92 A-----AHKVESSDQKPSVVGIDYLPMDPLPGVVVL-EMDFLHENAPQKLMNAL-GEQPD 144
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG R+ DH L FA+++ K G L K + G L +
Sbjct: 145 IVLSDMAAPTTGHRQTDHLRTVYLCEMAADFALSFLKSGGHFLAKAFQGGAENILLTKLK 204
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL FKG
Sbjct: 205 QNFKTVHHVKPPASRAESVELYLLALEFKG 234
>gi|395791528|ref|ZP_10470986.1| ribosomal RNA large subunit methyltransferase E [Bartonella
alsatica IBS 382]
gi|395408891|gb|EJF75501.1| ribosomal RNA large subunit methyltransferase E [Bartonella
alsatica IBS 382]
Length = 242
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 7/222 (3%)
Query: 8 KLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLD 67
++K+ P SS WL+R DPYV ++K + YR R+A+KL+EI+ + KFL+ G K++D
Sbjct: 23 RVKKKPGTIKASSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIID 82
Query: 68 CGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDR 127
GAAPG W QVA ++V + K+P V+ +D L + + G V+L + DF D +
Sbjct: 83 LGAAPGGWCQVAGRIVET---SDKKPS--VVGIDYLHVDRLPGVVML-EMDFLHADASQK 136
Query: 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187
L+ L ++ DVVLSDMA TG R+ DH L FA++ KPG L K + G
Sbjct: 137 LIDAL-GERPDVVLSDMAAPTTGHRQTDHLRTIFLCEVAADFALSVLKPGGHFLAKAFQG 195
Query: 188 RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
L ++ + + V +KPP+SR+ S EL+LL FK K
Sbjct: 196 GTENTLLTTLKQNFKTVHHVKPPASRTESVELYLLALEFKAK 237
>gi|198424725|ref|XP_002124852.1| PREDICTED: similar to cell division protein ftsj [Ciona
intestinalis]
Length = 273
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 124/207 (59%), Gaps = 9/207 (4%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
++ RQ +DP+V+ E YRCRSA+KL++I K L+PG+KV+D GAAPGSWSQVA +
Sbjct: 66 YVSRQLSDPFVKMRHLEGYRCRSAYKLMDIVEKHDLLKPGMKVVDLGAAPGSWSQVAAER 125
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDK---LDV 139
V +K GLV++VD L P+DG ++ DFT+ + QD + +L ++ +D+
Sbjct: 126 V-----INKDDDGLVIAVDLLKFPPLDGVTQITG-DFTKKETQDEIKALLGTEENRFVDI 179
Query: 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR 199
VL D AP+A+G + DH I Q+ A F + + L KI DG ++++ ++
Sbjct: 180 VLCDAAPSASGFKNKDHLAIVQIIAAATNFTLKMLANHGNFLFKILDGTETMKIKKFLSL 239
Query: 200 FYSQVKILKPPSSRSHSAELFLLGRGF 226
+ V LKP +SRS SAE F+L + +
Sbjct: 240 HFMSVASLKPKASRSESAEHFILCKNY 266
>gi|383312174|ref|YP_005364975.1| ribosomal RNA large subunit methyltransferase J [Candidatus
Rickettsia amblyommii str. GAT-30V]
gi|378930834|gb|AFC69343.1| ribosomal RNA large subunit methyltransferase J [Candidatus
Rickettsia amblyommii str. GAT-30V]
Length = 228
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 5/213 (2%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ K + SS WL+RQ DPYV KA+ + +R R+A+KLLEI K K P +K++D GA
Sbjct: 16 KTSKKRTVSSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGA 75
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG WSQVA KL+ + + ++S+D L I P+ G K DF + D ++ ++
Sbjct: 76 APGGWSQVASKLIKASDNNLNNK---IISIDMLKIEPVAGVEFFQK-DFFEADTEELIIQ 131
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L D + D+V+SDMA N G + DH L FA+ KP + KI+ G
Sbjct: 132 AL-DGRADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAE 190
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+L + R + V+ KP SSRS S E++L+
Sbjct: 191 NELLNKVKREFKTVRHFKPSSSRSESTEIYLVA 223
>gi|304310499|ref|YP_003810097.1| cell division protein FtsJ [gamma proteobacterium HdN1]
gi|301796232|emb|CBL44440.1| Cell division protein FtsJ [gamma proteobacterium HdN1]
Length = 206
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F DPYV+KA+++ YR R+A+KLLEI K + L+ G+ VLD GAAPG W
Sbjct: 3 RSKSSSRWLREHFDDPYVKKAQQDGYRSRAAYKLLEIQEKDRILKQGMTVLDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA + V G+ V++ D+L + P+ G L + DF + ++ +L+ + +
Sbjct: 63 SQVAARYVGDAGH--------VIASDRLEMDPLYGVDFL-QGDFCEEEVFAKLLQMTGNR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G R +D L + A KPG L+K++ G L +
Sbjct: 114 GIDLVISDMAPNMSGNRAVDQPRAMYLVELALDMATRVLKPGGSLLVKVFQGEGFDSLRK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + Q++ KP +SRS SAE + L + + G
Sbjct: 174 DMHTHFRQLQTRKPDASRSRSAETYWLAKDYMG 206
>gi|418939850|ref|ZP_13493236.1| Ribosomal RNA large subunit methyltransferase E [Rhizobium sp.
PDO1-076]
gi|375053458|gb|EHS49851.1| Ribosomal RNA large subunit methyltransferase E [Rhizobium sp.
PDO1-076]
Length = 263
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 128/229 (55%), Gaps = 9/229 (3%)
Query: 3 STTGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLR 60
+ TG KL ++V KGK SS W++R DPYVQ+AK E YR R+AFKLLEID K + L+
Sbjct: 9 NRTGRKLGQKVKKGKLKASSRRWIERHINDPYVQRAKLEGYRARAAFKLLEIDEKHQILK 68
Query: 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFT 120
+++D GAAPGSWSQ+A K+ +S D + V ++D L + P+ G +L + DF
Sbjct: 69 GARRIIDLGAAPGSWSQIAAKVTDSTDDDIR-----VAAIDFLEMAPLPGVKIL-QLDFL 122
Query: 121 QPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADC 180
D +L+ + D+V+SDMA TG + DH L FAV G
Sbjct: 123 DDDAPRQLMEAVGGTP-DLVISDMAAPTTGHQRTDHLRTMHLCEVAAYFAVEVLGEGGHF 181
Query: 181 LIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
L K + G L + + + QV KPPSSRS S E+FLL + FKGK
Sbjct: 182 LAKTFQGGTEKDLLNMLKQNFRQVLHNKPPSSRSESVEMFLLAKDFKGK 230
>gi|387895663|ref|YP_006325960.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens A506]
gi|387163256|gb|AFJ58455.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens A506]
Length = 216
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+ F DPYV+KA+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQEHFNDPYVKKAQKDGYRSRASYKLLEIQDKDKLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V DFT+ + ++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFVHGDFTEDKVLAEILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D L+K++ G + +
Sbjct: 114 QVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+I + + +V+ KP SSR S E +LL RGF+G
Sbjct: 174 NIRKLFDKVQTRKPDSSRDRSREQYLLCRGFRG 206
>gi|116250616|ref|YP_766454.1| ribosomal RNA methyltransferase/cell division FtsJ protein
[Rhizobium leguminosarum bv. viciae 3841]
gi|424873846|ref|ZP_18297508.1| 23S rRNA methylase [Rhizobium leguminosarum bv. viciae WSM1455]
gi|143461320|sp|Q1ML15.1|RLME_RHIL3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|115255264|emb|CAK06339.1| putative ribosomal RNA methyltransferase/cell division FtsJ protein
[Rhizobium leguminosarum bv. viciae 3841]
gi|393169547|gb|EJC69594.1| 23S rRNA methylase [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 239
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 123/227 (54%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K LR
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLERHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTGSTDDDIR-----VAAIDFLEMTQLPGVKIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L+ + D+V+SDMA TG DH L FAV G L
Sbjct: 125 SAPEKLLEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGHFLT 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G +L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERELLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFKGR 230
>gi|190890496|ref|YP_001977038.1| ribosomal RNA methyltransferase/cell division protein [Rhizobium
etli CIAT 652]
gi|226705303|sp|B3PQL4.1|RLME_RHIE6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|190695775|gb|ACE89860.1| ribosomal RNA methyltransferase/cell division protein [Rhizobium
etli CIAT 652]
Length = 239
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 122/227 (53%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K LR
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEIDEKYHILRGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTGSTDEDIR-----VAAIDFLEMAQLPGVKIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L+ + D+V+SDMA TG DH L FA+ G L
Sbjct: 125 SAPEKLMEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGHFLT 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFKGR 230
>gi|399521923|ref|ZP_10762588.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399109958|emb|CCH39148.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 207
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 120/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+K+ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSQRWLKEHFDDPYVKMAQKDGYRSRASYKLLEIQDKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ G + +L +D +P V + DFT + +++ + ++
Sbjct: 63 SQVTSRVIGDKG---RLIASDILEMDSIP------DVTFIQGDFTDDAVFAQILEAIGEN 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G +
Sbjct: 114 PVDLVISDMAPNMSGVRTADQARAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDAYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LL RGF+G
Sbjct: 174 QVRETFDKVQMRKPLSSRDRSREQYLLARGFRG 206
>gi|126664481|ref|ZP_01735465.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter sp. ELB17]
gi|126630807|gb|EBA01421.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter sp. ELB17]
Length = 206
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 126/213 (59%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS+ WL+ DP+V+KA+ + YR RS++KLLEI++K K ++P + V+D G+APG W
Sbjct: 3 RSKSSNRWLEEHVNDPFVKKAQMDGYRSRSSYKLLEINAKDKLIQPTMTVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA LV KG V++ D LP+ + G V + DFT+ + + ++ +L+D
Sbjct: 63 SQVATDLVGH--------KGRVIASDILPMDAVAG-VEFIQGDFTENAVFEEIMAVLRDA 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+DVV+SDMAPN +G+ D L + A KP + K++ G +
Sbjct: 114 KVDVVISDMAPNISGVNAADQAASMYLIELALDMASQVLKPKGSFVAKVFHGGGYDGYVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + +V + KP SSR+ S E++L+G+GF+G
Sbjct: 174 AVREQFDKVVVRKPDSSRARSREVYLVGKGFRG 206
>gi|417106670|ref|ZP_11962305.1| ribosomal RNA methyltransferase/cell division protein [Rhizobium
etli CNPAF512]
gi|327189976|gb|EGE57100.1| ribosomal RNA methyltransferase/cell division protein [Rhizobium
etli CNPAF512]
Length = 239
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 122/227 (53%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K LR
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEIDEKYHILRGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTGSTDEDIR-----VAAIDFLEMAQLPGVKIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L+ + D+V+SDMA TG DH L FA+ G L
Sbjct: 125 SAPEKLMEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGHFLT 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFKGR 230
>gi|392377558|ref|YP_004984717.1| ribosomal RNA large subunit (23S) methyltransferase [Azospirillum
brasilense Sp245]
gi|356879039|emb|CCC99935.1| ribosomal RNA large subunit (23S) methyltransferase [Azospirillum
brasilense Sp245]
Length = 236
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 117/210 (55%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV +A K +R R+AFKLL++D K L PG +V+D GAAPG W+QV
Sbjct: 29 SSARWLERHLNDPYVHEATKRGFRSRAAFKLLQLDEKFHLLGPGKRVVDLGAAPGGWTQV 88
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV V + K V+ +D LP+ P+ GA + + DF + +RL L D
Sbjct: 89 AVDKVQTAREGWK-----VVGLDILPMDPVPGATTM-QADFLEEGAAERLKEAL-GGPAD 141
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA G + DH I LA A FA PG + K++ G L E +
Sbjct: 142 VVLSDMAAPTIGHQSTDHLRIMALAEAAYDFAEEVLAPGGAFVAKLFQGGAEKSLLERLK 201
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ V+ KPP+SR+ S+E +++ GF+G
Sbjct: 202 RDFTTVRHAKPPASRAESSETYVVATGFRG 231
>gi|350563180|ref|ZP_08932002.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalimicrobium
aerophilum AL3]
gi|349779044|gb|EGZ33391.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalimicrobium
aerophilum AL3]
Length = 205
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 123/209 (58%), Gaps = 9/209 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ SS WL+ F DPYV +A+KE +R R+ +KL EI+ K + L+PG+ VLD GAAPG
Sbjct: 2 ARSKSSSRWLQEHFDDPYVLQAQKEGWRSRAIYKLKEINEKDQLLKPGMLVLDLGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQ A + V+ P G VL++D LP+ P G L + DFT I ++L+ + +
Sbjct: 62 WSQYAAQNVS--------PAGKVLALDILPVEPYAGVSFL-QGDFTDETIFEQLLASINE 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+D+V+SDMAPN +G + +D L + A KPG + L+K++ G QL
Sbjct: 113 RPVDLVMSDMAPNFSGNKAIDIPRAMYLVELTLDLAERVLKPGGNVLMKVFQGEGYEQLL 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLG 223
+ + Y++V KP +SR+ S+E++LLG
Sbjct: 173 AQMRQDYAKVITRKPQASRARSSEIYLLG 201
>gi|430002322|emb|CCF18103.1| Ribosomal RNA large subunit (23S) methyltransferase [Rhizobium sp.]
Length = 241
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 127/227 (55%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL ++V KGK SS W++R DPYVQ+AK E YR R+AFKLLEID K + L+
Sbjct: 11 TGRKLGQKVKKGKLKASSRRWIERHINDPYVQRAKLEGYRARAAFKLLEIDEKHQILKGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + P+ G +L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTGSTDEDIR-----VAAIDFLEMAPLPGVKIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+L + D+V+SDMA TG ++ DH L FAV K G L
Sbjct: 125 SAPQQLTEAIGGAP-DLVISDMAAPTTGHQKTDHLRTMHLCEVAAYFAVDVLKDGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP +SRS S E+FLL + FKG+
Sbjct: 184 KTFQGGTERDLLNMLKQNFRQVIHIKPGASRSESVEMFLLAKHFKGR 230
>gi|241203222|ref|YP_002974318.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240857112|gb|ACS54779.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 239
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 123/227 (54%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K LR
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLERHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTGSTDDDIR-----VAAIDFLEMTQLPGVKIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L+ + D+V+SDMA TG DH L FAV G L
Sbjct: 125 TAPEKLLEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGHFLT 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G +L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERELLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFKGR 230
>gi|374292556|ref|YP_005039591.1| Ribosomal RNA large subunit (23S) methyltransferase [Azospirillum
lipoferum 4B]
gi|357424495|emb|CBS87374.1| Ribosomal RNA large subunit (23S) methyltransferase [Azospirillum
lipoferum 4B]
Length = 238
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 121/213 (56%), Gaps = 7/213 (3%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+R DPYV +A K YR R+AFKLL++D K + L PG +V+D GAAPG W
Sbjct: 25 RTESSKRWLERHLNDPYVAEATKRGYRSRAAFKLLQLDEKFRLLAPGKRVVDLGAAPGGW 84
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+Q+AV+ V + K V+ +D LP+ P+ GA + + DF + + L L
Sbjct: 85 TQIAVEKVQTAKDGWK-----VVGLDILPMDPVPGATTM-QADFLEEGAAEALKEAL-GG 137
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+VLSDMA TG ++ DH I LA A FA PG + K++ G L +
Sbjct: 138 PADLVLSDMAAPTTGHQQTDHLRIMGLAEAAYDFAEEVLAPGGAFVAKLFQGGAERSLLD 197
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R ++ VK KPP+SR+ S+E +++ GF+G
Sbjct: 198 RLRRDFAVVKHAKPPASRAESSETYVVATGFRG 230
>gi|374622755|ref|ZP_09695276.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ectothiorhodospira sp.
PHS-1]
gi|373941877|gb|EHQ52422.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ectothiorhodospira sp.
PHS-1]
Length = 207
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 124/212 (58%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F+DP+VQKA++E +R R+ +KL EI ++ + +RPG++VLD GAAPG W
Sbjct: 3 RSKTSSRWLKEHFSDPFVQKAQQEGWRSRAVYKLQEIQARDRIIRPGMRVLDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+Q AV V KG V++ D LP+ I+G V + DF + + + ++ L D+
Sbjct: 63 TQFAVGEVGR--------KGRVIASDILPMDAIEG-VTFIQGDFHEEAVLEAILAALGDE 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+V+ DMAPN +G+ +D LA + A KPG D L+K++ G +
Sbjct: 114 PADLVICDMAPNTSGVEAVDQPRAMYLAELALDTAGRVLKPGGDFLVKLFHGTGFDDYVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ + +V+I KP +SRS S E++ L RG K
Sbjct: 174 TLRGQFDKVQIRKPEASRSRSREVYALARGVK 205
>gi|209548035|ref|YP_002279952.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|226705304|sp|B5ZR94.1|RLME_RHILW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|209533791|gb|ACI53726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 239
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 124/227 (54%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K LR
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 KRIIDLGAAPGSWSQIAAKVTGSTDEDIR-----VAAIDFLEMAQLPGVKIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L+ + D+V+SDMA TG DH L +FAV G L
Sbjct: 125 TAPEKLLEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAQFAVEVLGEGGHFLT 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G +L + + + QV +KP +SR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERELLAMLKQNFRQVVHVKPNASRAESVEMFLLAKGFKGR 230
>gi|91788714|ref|YP_549666.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polaromonas sp. JS666]
gi|123059751|sp|Q129M4.1|RLME_POLSJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91697939|gb|ABE44768.1| 23S rRNA Um-2552 2'-O-methyltransferase [Polaromonas sp. JS666]
Length = 247
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 121/209 (57%), Gaps = 5/209 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A+KE YR R+A+KL EID + ++PG V+D G+ PG+WSQ +
Sbjct: 30 WLHDHINDPYVKLAQKEGYRARAAYKLKEIDETLGLIKPGDCVVDLGSTPGAWSQYVRRK 89
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD----KLD 138
++ G + + G ++ +D LP+ PI+G V + DF +P++ +L L D K+D
Sbjct: 90 LSPTGAAAGELNGRIIGLDMLPMEPIEG-VAFIQGDFREPEVLQKLEQALATDKGQVKVD 148
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+ D I L + FA KP ++K++ G +L +
Sbjct: 149 LVISDMAPNLSGIESADAARIVHLVELAVEFAQNRMKPDGTLVVKLFHGSGYDELVKLFR 208
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ VK +KP +SRS+S+E FL+G+G K
Sbjct: 209 ATFKVVKPMKPKASRSNSSETFLVGKGLK 237
>gi|422668719|ref|ZP_16728573.1| ribosomal RNA methyltransferase RrmJ/FtsJ, partial [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|330981082|gb|EGH79185.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 204
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 121/211 (57%), Gaps = 9/211 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ ++H WLK F D YV+ A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTNHNWLKEHFDDKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ I ++++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAILEQILEAVGNT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIK++ G +
Sbjct: 114 QVDLVISDMAPNMSGLSAVDMPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
I + + +V++ KP SSR S E +LL RGF
Sbjct: 174 DIRKLFDKVQMRKPSSSRDRSREQYLLARGF 204
>gi|225710072|gb|ACO10882.1| ribosomal RNA methyltransferase CG11447 [Caligus rogercresseyi]
Length = 201
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 10/160 (6%)
Query: 20 SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA 79
S W++RQ D YV+KA+ E YR RSA+KLLE+D K+K LRP + V++CG APG+W+QV
Sbjct: 49 SSSWIRRQAKDIYVKKARSEGYRARSAYKLLEMDDKLKILRPNMNVMECGGAPGAWTQVL 108
Query: 80 VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL-KDDKLD 138
+ V+S G ++S D L P+ A++L DFT P QD +++ L K D
Sbjct: 109 TERVSS---------GTIISCDLLDYEPVGRAIILPNSDFTSPSTQDTILSHLGKSSGFD 159
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA 178
+VLSDMAPNA+GM E++H I L+ +FA+ +SKP A
Sbjct: 160 LVLSDMAPNASGMAELNHGQILNLSYEATKFALRHSKPEA 199
>gi|295689972|ref|YP_003593665.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Caulobacter segnis ATCC
21756]
gi|295431875|gb|ADG11047.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Caulobacter segnis ATCC
21756]
Length = 235
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 121/217 (55%), Gaps = 16/217 (7%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G+ S WL+RQ DP+ KA+ YR R+AFK+ EID K F R G +V+D G APG
Sbjct: 33 GRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISEIDEKFHFFRKGARVIDLGCAPGG 92
Query: 75 WSQVAVKLVNSHGYDSKQPKGL--VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL 132
W Q+AV+ +G+ + +D LP+ P+ A +L + DFT ++L+ IL
Sbjct: 93 WLQIAVE------------RGVTDLAGIDLLPVDPVAPAHIL-EMDFTADGAPEKLMEIL 139
Query: 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
+ D+V+SDMAPN G RE DH I L FAV KPG + K + G +
Sbjct: 140 GGEP-DLVMSDMAPNTVGHRETDHLRIVGLIEIAAEFAVDVLKPGGAFVAKAFQGGETAE 198
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + R +++V+ KP +SR S+E+FL+ GFKG+
Sbjct: 199 VIGKLKRHFTKVQHFKPKASRQDSSEVFLVATGFKGR 235
>gi|348618251|ref|ZP_08884781.1| Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA
methyltransferase) [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816498|emb|CCD29485.1| Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA
methyltransferase) [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 215
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 118/208 (56%), Gaps = 2/208 (0%)
Query: 20 SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA 79
+H WL+ +DPYV++A++E YR R+ +KL EID + K +RPGL+V+D GAAPGSWSQ
Sbjct: 8 THAWLRGHLSDPYVKRAQREGYRSRAVYKLQEIDQRDKLIRPGLRVIDLGAAPGSWSQY- 66
Query: 80 VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV 139
V+ + G G ++++D LP+ I G V+ + DF + + +L L + D+
Sbjct: 67 VRNRLARGIAGGGLNGAMIALDLLPMEEIAG-VLFIQGDFREAAVGAQLEKALGARRADL 125
Query: 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR 199
VLSDMAPN +G+ D I L + FA L K + G Q+ E R
Sbjct: 126 VLSDMAPNLSGIAAADAARIEHLGELTLEFAQRALHAQGALLAKYFHGSGYSQMVERFRR 185
Query: 200 FYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ V + KP +SRS S+E+F+LG+ K
Sbjct: 186 RFQSVAVRKPKASRSGSSEVFILGKSLK 213
>gi|301109152|ref|XP_002903657.1| ribosomal RNA large subunit methyltransferase J, putative
[Phytophthora infestans T30-4]
gi|262097381|gb|EEY55433.1| ribosomal RNA large subunit methyltransferase J, putative
[Phytophthora infestans T30-4]
Length = 243
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK ++S W++RQ++DP V++AK+E R R+AFKL E++ + + LR G VLD GAAPG
Sbjct: 26 KGKSNASARWVRRQWSDPVVKQAKREGLRSRAAFKLRELNDRFQLLRRGDMVLDLGAAPG 85
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAV+ + P V++VD L PI+GA ++ DF Q ++ +L L+
Sbjct: 86 GWTQVAVEATTPKSQKTVGPP-RVVAVDLLHFDPIEGASIVVG-DFRQAAVRKQLAEALR 143
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
K DVVLSDMAP+ +G D +L ++ A Y +PG + K+ +
Sbjct: 144 GRKADVVLSDMAPSFSGNFLTDSQHQLRLCHNALKMAELYLRPGGNFATKVLRCDGSEEF 203
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VK +KP SSR S E+FL+ +GFKG
Sbjct: 204 RADLKASFDVVKGMKPQSSRPESTEMFLVAKGFKG 238
>gi|67459510|ref|YP_247134.1| ribosomal RNA large subunit methyltransferase J [Rickettsia felis
URRWXCal2]
gi|75536083|sp|Q4UKG2.1|RLME_RICFE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|67005043|gb|AAY61969.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia felis
URRWXCal2]
Length = 227
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 116/213 (54%), Gaps = 5/213 (2%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ K + SS WL+RQ DPYV KA+ E +R R+A+KLLEI K K P +K++D GA
Sbjct: 16 KTSKKRTVSSSNWLRRQLNDPYVAKARLEGFRSRAAYKLLEIHGKFKLFNPNMKIVDLGA 75
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG WSQVA KL+ + ++S+D L I PI V + DF + + ++ ++
Sbjct: 76 APGGWSQVASKLIKA---SDNSLNNKIISIDLLEIEPI-AEVEFFQKDFFEENTEELIIQ 131
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L D K D+V+SDMA N G + DH L FA+ KP + KI+ G
Sbjct: 132 AL-DGKADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAE 190
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+L + R + VK KP SSRS S E++L+
Sbjct: 191 NELLNKVKREFRTVKHFKPSSSRSESTEIYLVA 223
>gi|49474969|ref|YP_033010.1| cell division protein ftsJ [Bartonella henselae str. Houston-1]
gi|81648296|sp|Q6G4Z3.1|RLME_BARHE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|49237774|emb|CAF26967.1| Cell division protein ftsJ [Bartonella henselae str. Houston-1]
Length = 247
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 121/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + KFL+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINQRYKFLKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
+ +V S ++P V+ +D L + P+ G V+L + DF D +L+ L K D
Sbjct: 94 SGCIVGS---SDEKPS--VVGIDYLHVDPLPGVVML-EMDFLHSDAPQKLIDAL-GTKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L FA++ KPG L K + G L ++
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTIYLCEVAADFALSVLKPGGHFLAKAFQGGAENTLLTTLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SRS S EL+LL FK K
Sbjct: 207 QNFKTVHHVKPPASRSESVELYLLALEFKAK 237
>gi|421590402|ref|ZP_16035411.1| 23S rRNA methyltransferase J [Rhizobium sp. Pop5]
gi|403704444|gb|EJZ20323.1| 23S rRNA methyltransferase J [Rhizobium sp. Pop5]
Length = 239
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 122/227 (53%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K LR
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEIDEKYHILRGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 KRIIDLGAAPGSWSQIAAKVTGSTDEDIR-----VAAIDFLEMAQLPGVKIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L+ + D+V+SDMA TG DH L FA+ G L
Sbjct: 125 TAPEKLMEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGHFLT 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFKGR 230
>gi|433675989|ref|ZP_20508154.1| ribosomal RNA large subunit methyltransferase E [Xanthomonas
translucens pv. translucens DSM 18974]
gi|430818896|emb|CCP38412.1| ribosomal RNA large subunit methyltransferase E [Xanthomonas
translucens pv. translucens DSM 18974]
Length = 219
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 122/210 (58%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ FADP+V+KA+ E R R+A+KL E+ + K L+P + V+D GAAPG W
Sbjct: 13 RSKSSQRWLREHFADPFVKKAQAEGMRSRAAYKLEELLQRDKLLKPDMLVVDLGAAPGGW 72
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K + +G VL++D L + P+ G L DF + ++ + +L D+
Sbjct: 73 SQQVRKSLGE--------RGRVLALDILEMPPLAGVEFLH-GDFREEEVLSQFEAMLGDN 123
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+VLSDMAPN +GM +D + LA + FA ++ KPG LIK++ G
Sbjct: 124 RVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMAFADSHLKPGGAFLIKLFQGVGSDDYIR 183
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E+++LG+G
Sbjct: 184 QMRRRYEKVSIRKPAASRKRSPEVYVLGQG 213
>gi|424898444|ref|ZP_18322018.1| 23S rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393182671|gb|EJC82710.1| 23S rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 239
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 123/227 (54%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K LR
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 KRIIDLGAAPGSWSQIAAKVTGSTDEDIR-----VAAIDFLEMTQLPGVKIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L+ + D+V+SDMA TG DH L FAV G L
Sbjct: 125 TAPEKLLEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGHFLT 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G +L + + + QV +KP +SR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERELLAMLKQNFRQVVHVKPNASRAESVEMFLLAKGFKGR 230
>gi|431931857|ref|YP_007244903.1| 23S rRNA methylase [Thioflavicoccus mobilis 8321]
gi|431830160|gb|AGA91273.1| 23S rRNA methylase [Thioflavicoccus mobilis 8321]
Length = 207
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 120/212 (56%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS WL R F D YV +A+K YR R+AFKLLE+ K + L G++VLD GAAPG W
Sbjct: 5 KTKSSRRWLDRHFNDDYVIRAQKLGYRSRAAFKLLELQEKDRLLGRGMRVLDLGAAPGGW 64
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +LV P+G+V+++D L I + G V+L + DF + L+ L +
Sbjct: 65 SQVATQLVG--------PRGIVVALDLLAIESLPGVVIL-QGDFRDEAVLAELMQALGEA 115
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LDVVLSDMAPN +G+ +D L + A KPG ++K++ G L
Sbjct: 116 PLDVVLSDMAPNISGIAAVDQPRAALLGELALDCARQVLKPGGALVVKMFQGEGFDALLG 175
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + V + KP +SR++S E +L+ +GF+
Sbjct: 176 DMRGLFRSVAVRKPAASRANSRECYLVAKGFR 207
>gi|421464901|ref|ZP_15913590.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
radioresistens WC-A-157]
gi|400204830|gb|EJO35813.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
radioresistens WC-A-157]
Length = 199
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 121/204 (59%), Gaps = 9/204 (4%)
Query: 24 LKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLV 83
++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+A KLV
Sbjct: 1 MREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLV 60
Query: 84 NSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD 143
KGLV++ D LP+ + V + DF + ++ ++L+ IL ++DVV+SD
Sbjct: 61 GD--------KGLVIASDILPMDAL-ADVTFLQGDFREEEVFEKLLNILNGRQVDVVISD 111
Query: 144 MAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQ 203
MAPN +G R +D L + F P ++K++ G + + + +
Sbjct: 112 MAPNTSGNRAVDQPRQIYLCELALDFVQKVLGPNGQFVVKVFQGAGFDEFRKQVVDSFDV 171
Query: 204 VKILKPPSSRSHSAELFLLGRGFK 227
+K +KP +SR+ S E+FL+G+G K
Sbjct: 172 LKTVKPAASRARSKEVFLIGQGRK 195
>gi|152995050|ref|YP_001339885.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinomonas sp. MWYL1]
gi|150835974|gb|ABR69950.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinomonas sp. MWYL1]
Length = 196
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 121/205 (59%), Gaps = 9/205 (4%)
Query: 24 LKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLV 83
+K F DPYV+K++++ YR R+++KL+EI+ K K +P ++V+D GAAPG WSQVA KLV
Sbjct: 1 MKEHFDDPYVKKSQQDGYRSRASYKLIEINDKDKLFKPAMRVVDLGAAPGGWSQVAAKLV 60
Query: 84 NSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD 143
H G +++ D L + P+ G V + DFT+ ++ + ++ + D K D+V+SD
Sbjct: 61 GDH--------GTIVASDILEMAPLPG-VSFVQGDFTEQEVYEAILAEIGDKKADLVISD 111
Query: 144 MAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQ 203
MAPN +G D L + A +PG + L+K++ G + +++ +
Sbjct: 112 MAPNMSGNSSSDQPQAMYLVELALDMAAQVLRPGGNFLVKVFQGEGFEEYLKTMRAQFDS 171
Query: 204 VKILKPPSSRSHSAELFLLGRGFKG 228
V KP +SR+ S E++LLGR +KG
Sbjct: 172 VVTRKPDASRARSREVYLLGRQYKG 196
>gi|388547471|ref|ZP_10150735.1| 23S rRNA methyltransferase J [Pseudomonas sp. M47T1]
gi|388274392|gb|EIK93990.1| 23S rRNA methyltransferase J [Pseudomonas sp. M47T1]
Length = 207
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLGWLKEHFNDPYVKMAQKDGYRSRASYKLLEIQEKYRLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDSVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G E+D L + A KPG D +IKI+ G +
Sbjct: 114 HVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAERVLKPGGDFVIKIFQGEGFDVYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V +LKP SSR S E ++LGRG+KG
Sbjct: 174 DARKKFDKVIMLKPDSSRDRSREQYMLGRGYKG 206
>gi|378822243|ref|ZP_09845052.1| ribosomal RNA large subunit methyltransferase J [Sutterella
parvirubra YIT 11816]
gi|378598935|gb|EHY32014.1| ribosomal RNA large subunit methyltransferase J [Sutterella
parvirubra YIT 11816]
Length = 217
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 125/218 (57%), Gaps = 6/218 (2%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
V K S+ W++R DP+V++++ E YR RS +KL E+D + LR G+ V+D GAA
Sbjct: 3 VATKKLRSNRAWIERHINDPFVKRSRAEGYRARSVYKLTELDDREHLLRRGMTVVDLGAA 62
Query: 72 PGSWSQVA-VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
PGSW+Q+ +L + G + +G ++++D LP+ PI+G L + DF + D+ D+L
Sbjct: 63 PGSWTQIVRERLSDKEG----RVQGRIIAMDILPMDPIEGVTFL-QGDFREQDVADKLSE 117
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
IL DK+DVVLSDMAPN +G+ D L F + + KP + K + G
Sbjct: 118 ILNGDKVDVVLSDMAPNLSGIAAADAARSLLLNELAHEFCLEHLKPTGVFVTKAFQGSGY 177
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
Q E++ + + +V KP +SR SAE++L+ R K
Sbjct: 178 SQFVEALKKSFKKVYTRKPAASRDTSAEVYLVARELKA 215
>gi|87198497|ref|YP_495754.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium
aromaticivorans DSM 12444]
gi|123490739|sp|Q2GB53.1|RLME_NOVAD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|87134178|gb|ABD24920.1| 23S rRNA Um-2552 2'-O-methyltransferase [Novosphingobium
aromaticivorans DSM 12444]
Length = 222
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 120/216 (55%), Gaps = 11/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL RQ DPYV+KAK E +R R+AFKL+E+D K L+ +V+D G APG
Sbjct: 16 KKRTASSARWLSRQLNDPYVKKAKAEGWRSRAAFKLIELDEKFGLLKGAKRVVDLGIAPG 75
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQV K K P ++ +D LP PI+G V + + DF + + L + L
Sbjct: 76 GWSQVVRK---------KAPAAKIVGIDLLPTEPIEG-VTIFEMDFMADEAPEALQSAL- 124
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D D+VLSDMA N G ++ DH L + FAV PG + K++ G +L
Sbjct: 125 DGPPDLVLSDMAANTVGHKQTDHLRTMGLVETAVDFAVQTLAPGGAFVAKVFAGGTDTEL 184
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + ++ VK KPP+SR S+E +++ +GFKG+
Sbjct: 185 LAILKKNFTTVKHAKPPASRKDSSEWYVIAQGFKGR 220
>gi|51473362|ref|YP_067119.1| rRNA (uridine-2'-O-)-methyltransferase (23S ribosomal RNA
methyltransferase) [Rickettsia typhi str. Wilmington]
gi|383752138|ref|YP_005427238.1| rRNA (uridine-2'-O-)-methyltransferase [Rickettsia typhi str.
TH1527]
gi|383842974|ref|YP_005423477.1| rRNA (uridine-2'-O-)-methyltransferase [Rickettsia typhi str.
B9991CWPP]
gi|81390247|sp|Q68XK5.1|RLME_RICTY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|51459674|gb|AAU03637.1| rRNA (uridine-2'-O-)-methyltransferase (23S ribosomal RNA
methyltransferase) [Rickettsia typhi str. Wilmington]
gi|380758781|gb|AFE54016.1| rRNA (uridine-2'-O-)-methyltransferase [Rickettsia typhi str.
TH1527]
gi|380759621|gb|AFE54855.1| rRNA (uridine-2'-O-)-methyltransferase [Rickettsia typhi str.
B9991CWPP]
Length = 227
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 121/225 (53%), Gaps = 7/225 (3%)
Query: 1 NISTTGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKF 58
N+S K+ V K SS WL+RQ DPYV KA+ E +R R+A+KLLEI K +
Sbjct: 4 NLSGYRNKIVRVKTAKKRPISSSNWLRRQLNDPYVAKARLEGFRSRAAYKLLEIHDKFRL 63
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD 118
P +K++D GAAPG WSQVA KL+ + + ++S+D L I PI G L K D
Sbjct: 64 FTPNMKIVDLGAAPGGWSQVASKLIKASDNNLNNK---IISIDLLKIEPIVGVEFLQK-D 119
Query: 119 FTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA 178
F + D ++ ++ L D K D+V+SDMA N G + DH L FA+ KP
Sbjct: 120 FFEKDTEELIIHGL-DGKADLVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSC 178
Query: 179 DCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+ KI+ G L + R + VK KP SSRS S E++L+
Sbjct: 179 HFIAKIFRGGAETALLNKVKREFRTVKHFKPVSSRSESTEIYLVA 223
>gi|319407620|emb|CBI81272.1| cell division protein ftsJ [Bartonella sp. 1-1C]
Length = 240
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 119/210 (56%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR RSA+KL+EID + K + G K++D GAAPG W QV
Sbjct: 32 SSRRWLERHLNDPYVHQSKVDGYRSRSAYKLIEIDERYKIFKKGQKIIDLGAAPGGWCQV 91
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + V +S K V+ +D LP+ P+ G VVL + DF + +L+ L ++ D
Sbjct: 92 AARKV-----ESSNQKPSVVGIDYLPMDPLPGVVVL-EMDFLHENAPRKLMNAL-GEQPD 144
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG R+ DH L FA++ K G L K + G L ++
Sbjct: 145 IVLSDMAAPTTGHRKTDHLRTVYLCEMAADFALSVLKSGGHFLAKAFQGGAENTLLTTLK 204
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL FKG
Sbjct: 205 QNFKTVHHVKPPASRAESVELYLLALEFKG 234
>gi|326317394|ref|YP_004235066.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323374230|gb|ADX46499.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 218
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 118/205 (57%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL D YV+ A+KE YR R+A+KL EID + +RPG V+D G+APG+WSQ +
Sbjct: 14 WLHDHVNDTYVKLAQKEGYRARAAYKLKEIDETLGLIRPGQVVVDLGSAPGAWSQYLRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
+ G + Q G ++++D LP+ PI+G L + DF + D+ RL ++ +DVV+S
Sbjct: 74 MAPAGAATGQLNGTLIALDILPMEPIEGVTFL-QGDFREEDVLARLQETVQGRPVDVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ +D I L + FA + KP ++K++ G QL + +
Sbjct: 133 DMAPNLSGVESVDAVRIAHLIELAVDFAQQHLKPDGALVVKLFHGSGYTQLVQLFKENFR 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK +KP +SR S+E FL+G G +
Sbjct: 193 TVKPMKPKASRDKSSETFLVGMGLR 217
>gi|120611284|ref|YP_970962.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax citrulli
AAC00-1]
gi|143459163|sp|A1TQF0.1|RLME_ACIAC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120589748|gb|ABM33188.1| 23S rRNA Um-2552 2'-O-methyltransferase [Acidovorax citrulli
AAC00-1]
Length = 218
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 118/205 (57%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL D YV+ A+KE YR R+A+KL EID + +RPG V+D G+APG+WSQ +
Sbjct: 14 WLHDHVNDTYVKLAQKEGYRARAAYKLKEIDETLGLIRPGQVVVDLGSAPGAWSQYLRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
+ G + Q G ++++D LP+ PI+G L + DF + D+ RL ++ +DVV+S
Sbjct: 74 MAPAGAAAGQLNGTLIALDILPMEPIEGVTFL-QGDFREEDVLARLQEAVQARPVDVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ +D I L + FA + KP ++K++ G QL + +
Sbjct: 133 DMAPNLSGVESVDAVRIAHLIELAVDFAQQHLKPDGALVVKLFHGSGYAQLVQLFKEHFR 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK +KP +SR S+E FL+G G +
Sbjct: 193 TVKPMKPKASRDKSSETFLVGMGLR 217
>gi|126642713|ref|YP_001085697.1| cell division protein [Acinetobacter baumannii ATCC 17978]
Length = 199
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 121/204 (59%), Gaps = 9/204 (4%)
Query: 24 LKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLV 83
++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+A KLV
Sbjct: 1 MREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLV 60
Query: 84 NSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD 143
S KGLV++ D LP+ + L + DF + + ++L+ IL ++D+V+SD
Sbjct: 61 GS--------KGLVIASDILPMDALPDVTFL-QGDFREEAVFEKLLNILNGRQVDIVISD 111
Query: 144 MAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQ 203
MAPN +G R +D L + FA P ++K++ G + + + +
Sbjct: 112 MAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVVDSFDV 171
Query: 204 VKILKPPSSRSHSAELFLLGRGFK 227
+K KP +SR+ S E+FL+G+G K
Sbjct: 172 LKTAKPAASRARSKEVFLVGQGRK 195
>gi|388466819|ref|ZP_10141029.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
synxantha BG33R]
gi|423693612|ref|ZP_17668132.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens SS101]
gi|387999590|gb|EIK60919.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens SS101]
gi|388010399|gb|EIK71586.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
synxantha BG33R]
Length = 216
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+ F DPYV+KA+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQEHFNDPYVKKAQKDGYRSRASYKLLEIQDKDKLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V DFT+ + ++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFVHGDFTEDKVLAEILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D L+K++ G + +
Sbjct: 114 QVDLVISDMAPNMSGLPAVDMPRAMFLCELALDLAGRVLRPGGDFLVKVFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+I + + +V+ KP SSR S E +LL RG++G
Sbjct: 174 NIRKLFDKVQTRKPDSSRDRSREQYLLCRGYRG 206
>gi|292493675|ref|YP_003529114.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus halophilus
Nc4]
gi|291582270|gb|ADE16727.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus halophilus
Nc4]
Length = 212
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 120/213 (56%), Gaps = 10/213 (4%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
+ K K HS+ WL+ F DPYV KAK + YR R+ FKL EID++ + LRP + V+D GAA
Sbjct: 1 MAKNKGHSAR-WLREHFRDPYVTKAKAQGYRSRAVFKLQEIDTRERLLRPSMVVVDLGAA 59
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
PG WSQ A++ V + G V+++D LP+ P G V + DF + ++ L
Sbjct: 60 PGGWSQWAIEQVGAQGQ--------VIALDILPMVPPAG-VQFIQGDFCEDNVLAELQNT 110
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L +D+V+SDMAPN +GM +D L + FA + P L+K + G
Sbjct: 111 LAGRVVDLVMSDMAPNMSGMAAVDQPRAIYLGELALAFAQEHLGPEGSFLLKTFQGEGFE 170
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGR 224
L E+I + +S V+I KP +SR S E++++ R
Sbjct: 171 ALYEAIRQEFSGVRIKKPSASRGRSREVYIVAR 203
>gi|379022561|ref|YP_005299222.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
canadensis str. CA410]
gi|376323499|gb|AFB20740.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
canadensis str. CA410]
Length = 227
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 5/213 (2%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ K + SS+ WL+RQ DPYV KA+ + +R R+A+KLLEI K K P +K++D GA
Sbjct: 16 KTSKKRTVSSNNWLRRQLNDPYVAKARTQGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGA 75
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG WSQ+A KL+ + ++S+D L + PI G K DF + D + ++
Sbjct: 76 APGGWSQIASKLIKA---SDNSLNNKIISIDLLEVRPIVGVEFFQK-DFFEEDTEKLIIQ 131
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L D K ++V+SDMA N G + DH L + FA+ KP + KI+ G
Sbjct: 132 AL-DGKANIVMSDMASNTIGHKATDHIRTLLLCEQALEFALKVLKPSGHFIAKIFRGGAE 190
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+L + R + VK KP SSRS S E++L+
Sbjct: 191 NKLLNKVKREFRTVKHFKPLSSRSESTEIYLVA 223
>gi|237748683|ref|ZP_04579163.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
formigenes OXCC13]
gi|229380045|gb|EEO30136.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
formigenes OXCC13]
Length = 215
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 119/205 (58%), Gaps = 3/205 (1%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
W+K DP+V+ A+KE YR R+A+KL+EID ++PG ++D G+ PGSWSQ V+
Sbjct: 10 WMKNHLDDPFVKMAQKEGYRARAAYKLIEIDEDAHLIKPGQVIVDLGSTPGSWSQYVVRK 69
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
+ S G + Q G V+ +D LP+ PI+G V + DF + + L +L+ K D+VLS
Sbjct: 70 LGSSG--ANQLNGTVIGLDLLPMEPIEG-VHFFQGDFREESVLQELENLLQGRKADLVLS 126
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D + L + FA + KP L+K ++G + + ++ +
Sbjct: 127 DMAPNLSGIASADAARVEYLMELALDFAQAHLKPSGALLVKCFNGSSYNDILKNFRETFV 186
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
V KP +SR +S+E+FLLGR +
Sbjct: 187 TVTPKKPKASRDYSSEIFLLGRQLR 211
>gi|406999295|gb|EKE16984.1| hypothetical protein ACD_10C00688G0004 [uncultured bacterium]
Length = 195
Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 117/204 (57%), Gaps = 9/204 (4%)
Query: 24 LKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLV 83
++ F DPYVQ A+KE +R R+AFKL+EID K K L+ G V+D GA PG WSQVAVK V
Sbjct: 1 MREHFNDPYVQLARKEGWRSRAAFKLMEIDDKDKLLKKGEVVVDLGATPGGWSQVAVKRV 60
Query: 84 NSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD 143
GLV ++D L + PI G V DF + D+ +L L ++ +V+SD
Sbjct: 61 GD--------GGLVFALDLLEMEPIHG-VEFILGDFREDDVLAKLKEKLNGRQVGLVMSD 111
Query: 144 MAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQ 203
MAPN +G+ +D I LA + FA+T+ KP L+K++ G + S+ +
Sbjct: 112 MAPNMSGVPLIDQARIMHLAELSLEFALTHMKPDGAFLVKVFQGTDYENFFRSMREAFKT 171
Query: 204 VKILKPPSSRSHSAELFLLGRGFK 227
V + KP +SR SAEL+LLG +
Sbjct: 172 VVVRKPDASRDRSAELYLLGHTLR 195
>gi|121605506|ref|YP_982835.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polaromonas
naphthalenivorans CJ2]
gi|143460978|sp|A1VQI6.1|RLME_POLNA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120594475|gb|ABM37914.1| 23S rRNA Um-2552 2'-O-methyltransferase [Polaromonas
naphthalenivorans CJ2]
Length = 245
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 120/209 (57%), Gaps = 5/209 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV++A+KE YR R+AFKL E+D + ++PG V+D G+ PG+WSQ +
Sbjct: 33 WLHDHINDPYVKQARKEGYRARAAFKLKEMDETLGLIKPGDCVVDLGSTPGAWSQYVRRK 92
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD----KLD 138
++ G G ++ +D LP+ PI+G VV + DF +P++ +L L + K+D
Sbjct: 93 LSPTGAAVGALNGRIIGLDLLPMEPIEG-VVFIQGDFREPEVLAKLEQALSTEKGPVKVD 151
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+ D I L + FA T KP ++K++ G L +
Sbjct: 152 LVISDMAPNLSGIESADAARIAHLVELAVEFAQTRMKPDGALVVKLFHGSGYDDLVKLFQ 211
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ VK +KP +SR +S+E FL+GRG K
Sbjct: 212 ASFKVVKRMKPKASRPNSSETFLVGRGLK 240
>gi|222110672|ref|YP_002552936.1| ribosomal RNA methyltransferase rrmj/ftsj [Acidovorax ebreus TPSY]
gi|221730116|gb|ACM32936.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax ebreus TPSY]
Length = 220
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 121/205 (59%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL D YV+ A+KE YR R+A+KL EID ++ ++PG V+D G++PG+WSQ +
Sbjct: 14 WLHDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGHVVVDLGSSPGAWSQYVRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G Q G+++++D LP+ PI+G L + DF + ++ RL ++ +DVV+S
Sbjct: 74 LSPDGAAVGQLNGVIIALDILPMEPIEGVTFL-QGDFREEEVLARLQEAVQGRPVDVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ +D I L + FAV + KP ++K++ G QL + +
Sbjct: 133 DMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPEGALVVKLFHGSGYSQLVQLFKDTFR 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK +KP +SR S+E FL+G G K
Sbjct: 193 VVKPMKPKASRDKSSETFLVGMGLK 217
>gi|424915384|ref|ZP_18338748.1| 23S rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392851560|gb|EJB04081.1| 23S rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 239
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 123/227 (54%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K LR
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 KRIIDLGAAPGSWSQIAAKVTGSTDEDIR-----VAAIDFLEMAQLPGVKIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+L+ + D+V+SDMA TG DH L +FAV G L
Sbjct: 125 TAPGKLLEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAQFAVEVLGEGGHFLT 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G +L + + + QV +KP +SR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERELLAMLKQNFRQVVHVKPNASRAESVEMFLLAKGFKGR 230
>gi|403530064|ref|YP_006664593.1| cell division protein ftsJ [Bartonella quintana RM-11]
gi|403232136|gb|AFR25879.1| cell division protein ftsJ [Bartonella quintana RM-11]
Length = 241
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+E++ + KFL+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKIDGYRSRAAYKLIEMNERYKFLKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V S ++P V+ +D LP+ P+ G ++L + DF D +L+ L K D
Sbjct: 94 AQRIVGS---SDEKPS--VVGIDYLPVVPLPGVIML-EMDFLHTDAPQKLIDAL-GTKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA G R+ D+ L FA++ K G L+K + G L ++
Sbjct: 147 VVLSDMAAPTIGHRQTDYLRTIYLCEVAADFALSVLKSGGHFLVKAFQGGAENTLLTTLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SR+ S EL+LL FK K
Sbjct: 207 QNFKTVHHVKPPASRTESVELYLLALEFKAK 237
>gi|15604038|ref|NP_220553.1| cell division protein FTSJ (ftsJ) [Rickettsia prowazekii str.
Madrid E]
gi|383487008|ref|YP_005404688.1| cell division protein FtsJ [Rickettsia prowazekii str. GvV257]
gi|383487583|ref|YP_005405262.1| cell division protein FtsJ [Rickettsia prowazekii str. Chernikova]
gi|383488429|ref|YP_005406107.1| cell division protein FtsJ [Rickettsia prowazekii str. Katsinyian]
gi|383489272|ref|YP_005406949.1| cell division protein FtsJ [Rickettsia prowazekii str. Dachau]
gi|383499407|ref|YP_005412768.1| cell division protein FtsJ [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500248|ref|YP_005413608.1| cell division protein FtsJ [Rickettsia prowazekii str. RpGvF24]
gi|386081993|ref|YP_005998570.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia
prowazekii str. Rp22]
gi|9910874|sp|Q9ZE00.1|RLME_RICPR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|3860729|emb|CAA14630.1| CELL DIVISION PROTEIN FTSJ (ftsJ) [Rickettsia prowazekii str.
Madrid E]
gi|292571757|gb|ADE29672.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia
prowazekii str. Rp22]
gi|380757373|gb|AFE52610.1| cell division protein FTSJ (ftsJ) [Rickettsia prowazekii str.
GvV257]
gi|380757945|gb|AFE53181.1| cell division protein FTSJ (ftsJ) [Rickettsia prowazekii str.
RpGvF24]
gi|380760462|gb|AFE48984.1| cell division protein FTSJ (ftsJ) [Rickettsia prowazekii str.
Chernikova]
gi|380761308|gb|AFE49829.1| cell division protein FTSJ (ftsJ) [Rickettsia prowazekii str.
Katsinyian]
gi|380762153|gb|AFE50673.1| cell division protein FTSJ (ftsJ) [Rickettsia prowazekii str.
BuV67-CWPP]
gi|380762995|gb|AFE51514.1| cell division protein FTSJ (ftsJ) [Rickettsia prowazekii str.
Dachau]
Length = 227
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 121/225 (53%), Gaps = 7/225 (3%)
Query: 1 NISTTGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKF 58
N+S K+ V K SS WL+RQ DPYV KA+ E +R R+A+KLLEI K +
Sbjct: 4 NLSGYRNKIVRVKTSKKRPISSSNWLRRQLNDPYVAKARLEGFRSRAAYKLLEIHYKFRL 63
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD 118
P +K++D GAAPG WSQVA KL+ + + ++S+D L I PI G L K D
Sbjct: 64 FTPNMKIVDLGAAPGGWSQVASKLIKASDNNLNNK---IISIDLLEIEPIVGVEFLQK-D 119
Query: 119 FTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA 178
F + D ++ ++ L + K D+V+SDMA N G + DH L FA+ KP
Sbjct: 120 FFEKDTEELIIHNL-EGKADIVMSDMASNTIGHKATDHMRTLLLCEQAFEFALKVLKPSC 178
Query: 179 DCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+ KI+ G L + R + VK KP SSRS S E++L+
Sbjct: 179 HFIAKIFRGGAETALLNKVKREFRTVKHFKPVSSRSESTEIYLVA 223
>gi|341583433|ref|YP_004763924.1| cell division protein ftsJ [Rickettsia heilongjiangensis 054]
gi|350273216|ref|YP_004884529.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
japonica YH]
gi|340807659|gb|AEK74247.1| cell division protein ftsJ [Rickettsia heilongjiangensis 054]
gi|348592429|dbj|BAK96390.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
japonica YH]
Length = 227
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 113/205 (55%), Gaps = 5/205 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV KA+ + +R R+A+KLLEI K K P +K++D GAAPG WSQV
Sbjct: 24 SSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQV 83
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KL+ + + ++S+D L I I G K DF + D ++ ++ L D + D
Sbjct: 84 ASKLIKASDNNLNNK---IISIDVLEIEHIAGVEFFQK-DFFEADTEELIIQAL-DGRAD 138
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N G + DH L FA+ KP + KI+ G +L +
Sbjct: 139 IVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVK 198
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
R + VK KP SSRS S E++L+
Sbjct: 199 REFKTVKHFKPSSSRSESTEIYLVA 223
>gi|157828081|ref|YP_001494323.1| cell division protein ftsJ [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165932781|ref|YP_001649570.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Iowa]
gi|378720881|ref|YP_005285768.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Colombia]
gi|378722234|ref|YP_005287120.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Arizona]
gi|378723593|ref|YP_005288477.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Hauke]
gi|379016857|ref|YP_005293092.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Brazil]
gi|379017381|ref|YP_005293615.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Hino]
gi|189040328|sp|B0BWD8.1|RLME_RICRO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040329|sp|A8GQZ0.1|RLME_RICRS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|157800562|gb|ABV75815.1| cell division protein ftsJ [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165907868|gb|ABY72164.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Iowa]
gi|376325381|gb|AFB22621.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Brazil]
gi|376325905|gb|AFB23144.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Colombia]
gi|376327258|gb|AFB24496.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Arizona]
gi|376329946|gb|AFB27182.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Hino]
gi|376332608|gb|AFB29841.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Hauke]
Length = 227
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 114/205 (55%), Gaps = 5/205 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV KA+ + +R R+A+KLLEI K K P +KV+D GAAPG WSQV
Sbjct: 24 SSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKVVDLGAAPGGWSQV 83
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KL+ + + ++S+D L I + G + K DF + D ++ ++ L D + D
Sbjct: 84 ASKLIKASDNNLNNK---IISIDVLEIEHVAGVEFVQK-DFFEADTEELIIQAL-DGRAD 138
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N G + DH L FA+ KP + KI+ G +L +
Sbjct: 139 IVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVK 198
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
R + VK KP SSRS S E++L+
Sbjct: 199 REFKTVKHFKPSSSRSESTEIYLVA 223
>gi|348669518|gb|EGZ09341.1| hypothetical protein PHYSODRAFT_339689 [Phytophthora sojae]
Length = 252
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 127/219 (57%), Gaps = 5/219 (2%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK ++S W++RQ++DP V++AK+E R R+AFKL E++ + + LR G VLD GAAPG
Sbjct: 24 KGKSNASARWVRRQWSDPVVKQAKREGLRSRAAFKLRELNDRFQLLRRGDMVLDLGAAPG 83
Query: 74 SWSQVAVKLV--NSHGYDS--KQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV 129
W+Q+AV+ S G + ++P V++VD P++GA ++ DF Q ++ +L
Sbjct: 84 GWTQIAVEATAPKSKGLKTYGQEPAPRVVAVDLKHFDPVEGAAIVVG-DFRQAAVRRQLD 142
Query: 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
L+ K DVVLSDMAP+ +G D +L ++ A Y +PG + KI
Sbjct: 143 EALRGRKADVVLSDMAPSFSGNFLTDSQHQLRLCHNALKMAELYLRPGGNFATKILRCDG 202
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + VK +KP SSR S E+FL+ +GFKG
Sbjct: 203 SEEFRADLKEAFDVVKAMKPQSSRPESTEMFLVAKGFKG 241
>gi|422350578|ref|ZP_16431462.1| 23S rRNA (uridine(2552)-2'-O-)-methyltransferase [Sutterella
wadsworthensis 2_1_59BFAA]
gi|404657181|gb|EKB30084.1| 23S rRNA (uridine(2552)-2'-O-)-methyltransferase [Sutterella
wadsworthensis 2_1_59BFAA]
Length = 217
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 125/217 (57%), Gaps = 6/217 (2%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
V K S+ W++R DP+V+++K E YR RS +KL E+D + LR G+ V++ GAA
Sbjct: 3 VATKKLRSNRAWIERHINDPFVKRSKAEGYRARSVYKLTELDDREHLLRRGMTVVELGAA 62
Query: 72 PGSWSQVA-VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
PGSW+Q+ +L + G + +G ++++D LP+ PIDG L + DF + +I D+L
Sbjct: 63 PGSWTQIVRERLSDKDG----RVQGRIIAMDILPMDPIDGVTFL-QGDFREQEIADKLAE 117
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
IL DK+DVVLSDMAPN +G+ D L F + + KP + K + G
Sbjct: 118 ILDGDKVDVVLSDMAPNLSGIAAADAARSLLLNELAHEFCLEHLKPNGVFVTKSFQGSGF 177
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q E++ + + +V KP +SR SAE++L+ R K
Sbjct: 178 SQFVEALKKTFKKVYTRKPAASRDTSAEVYLVARELK 214
>gi|253997068|ref|YP_003049132.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera mobilis
JLW8]
gi|253983747|gb|ACT48605.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera mobilis
JLW8]
Length = 206
Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 127/210 (60%), Gaps = 9/210 (4%)
Query: 18 HSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ 77
+S W++ DPYV+ A+K+ YR R+A+KL+EID K K ++PG+ V+D G+APGSWSQ
Sbjct: 5 RTSKAWMQEHLNDPYVKLAQKDGYRARAAYKLMEIDDKDKIIKPGMTVVDLGSAPGSWSQ 64
Query: 78 VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL 137
V V+ + G V+++D L + PI G V + DF + + L L + ++
Sbjct: 65 VTVQRLKGQGK--------VIALDILEMTPISG-VTFIQGDFREDAVLKLLEQTLNNLQV 115
Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
D+V++DMAPN +G++++D L + F+ + KP + L+K++ G ++ +S+
Sbjct: 116 DLVIADMAPNISGVKDVDQAGAAYLTELALEFSKDWLKPNGNFLVKVFIGAGFEEILQSM 175
Query: 198 TRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +++V KP +SR S+E++LLG G K
Sbjct: 176 RQMFTKVVTRKPKASRDRSSEVYLLGIGRK 205
>gi|86356435|ref|YP_468327.1| cell division protein [Rhizobium etli CFN 42]
gi|123512933|sp|Q2KC36.1|RLME_RHIEC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|86280537|gb|ABC89600.1| cell division protein [Rhizobium etli CFN 42]
Length = 239
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 121/227 (53%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K LR
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLQRHINDPYVQRAQLEGYRARAAFKLLEIDEKYHILRGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF P
Sbjct: 71 KRIIDLGAAPGSWSQIAAKVTGSTDEDIR-----VAAIDFLEMAQLPGVWIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+L+ + D+V+SDMA TG DH L FA+ G L
Sbjct: 125 SAPGKLMEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAIEVLGEGGHFLT 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFKGR 230
>gi|114321125|ref|YP_742808.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alkalilimnicola
ehrlichii MLHE-1]
gi|122311297|sp|Q0A769.1|RLME_ALHEH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|114227519|gb|ABI57318.1| 23S rRNA Um-2552 2'-O-methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 209
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 117/204 (57%), Gaps = 9/204 (4%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL +D +VQ+A+K YR R+AFKLLEI K + +RPG+ V+D GAAPG W QVA +L
Sbjct: 13 WLDEHHSDHWVQQAQKAGYRSRAAFKLLEIQEKDRLIRPGMTVVDLGAAPGGWCQVAAEL 72
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
V +G V ++D LP+ + G V+ + DFT+ L+ L+ +D+VLS
Sbjct: 73 VGD--------RGAVFALDILPMEALPGVHVI-QGDFTEEAPLQALLQALEGRPVDLVLS 123
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+R +D LA + FA +PG D L K++ G + R +S
Sbjct: 124 DMAPNLSGVRVVDQPRAMYLAELALDFAGQVLQPGGDFLTKVFHGEGLDDYRRDLQRQFS 183
Query: 203 QVKILKPPSSRSHSAELFLLGRGF 226
+V KP +SR+ S E +LL RGF
Sbjct: 184 KVITRKPRASRARSRESYLLARGF 207
>gi|338974098|ref|ZP_08629460.1| ribosomal RNA large subunit methyltransferase J [Bradyrhizobiaceae
bacterium SG-6C]
gi|338232825|gb|EGP07953.1| ribosomal RNA large subunit methyltransferase J [Bradyrhizobiaceae
bacterium SG-6C]
Length = 230
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ +R R+A+KL E+D K + L+ G V+D GAAPG WSQ+
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGFRSRAAYKLQEMDDKHRLLKRGQVVVDLGAAPGGWSQI 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V S + KG V+++D L + + G V ++ DF + D+L ++ D
Sbjct: 82 AAKRVGSL-----EGKGKVVAIDLLDMPEVPG-VTFAQMDFLDDNAPDKLRAMIGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG R+ D I L + FA PG L K++ G L +
Sbjct: 135 VVMSDMAANTTGHRKTDQLRIIGLVESAAAFACEILNPGGTFLAKVFQGGADADLLVQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R ++ VK +KP +SR S+E ++L GF+G+
Sbjct: 195 RDFASVKHVKPAASRQDSSERYVLATGFRGE 225
>gi|358638079|dbj|BAL25376.1| cell division protein [Azoarcus sp. KH32C]
Length = 212
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 116/217 (53%), Gaps = 19/217 (8%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
P + +S W++ D YVQ+AK E YR R+A+KL+EID + L+PG+ V+D GAA
Sbjct: 4 TPMKRTKTSKAWMQEHVNDAYVQRAKSEGYRSRAAYKLMEIDERDHLLKPGMVVVDLGAA 63
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQD----- 126
PGSW QVA + V + G V ++D LP+ P+ G DF Q D QD
Sbjct: 64 PGSWCQVATRRVGAAGK--------VFALDLLPVEPMAG------VDFIQGDFQDDAVLE 109
Query: 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186
L L +D+VLSDMAPN +G+ D L + F+ + K G LIK++
Sbjct: 110 ELEARLAGQPVDIVLSDMAPNMSGIDTADQARSIYLGELALDFSTRHLKIGGSFLIKVFQ 169
Query: 187 GRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
G + + R +S +++ KP +SR S E++LLG
Sbjct: 170 GAGFMEFRNEVARHFSTLQVRKPKASRDRSPEVYLLG 206
>gi|332188162|ref|ZP_08389891.1| ftsJ-like methyltransferase family protein [Sphingomonas sp. S17]
gi|332011769|gb|EGI53845.1| ftsJ-like methyltransferase family protein [Sphingomonas sp. S17]
Length = 231
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 116/216 (53%), Gaps = 11/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+ + S WL+RQ DPYV++AK E YR R+A+KL+E+D + FLR +++D G APG
Sbjct: 16 RNRTAQSTRWLERQLNDPYVRRAKAEGYRSRAAYKLIELDERFGFLRGKKRIIDLGIAPG 75
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQV + K P V+ +D LP+ PIDG V + + DF DRL+ L
Sbjct: 76 GWSQVVRR---------KLPNAAVVGIDLLPVDPIDG-VTIFEMDFMDDAAPDRLMEALG 125
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMA N G + D L FA PG + K++ G QL
Sbjct: 126 GAP-DLVMSDMAANTVGHPQTDALRTMGLVETAFAFACDVLSPGGVFVSKVFAGGADSQL 184
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ VK KPPSSR S E F++ +GFKG+
Sbjct: 185 VAEMKRHFATVKHAKPPSSRKGSVEWFVVAQGFKGR 220
>gi|83951908|ref|ZP_00960640.1| ribosomal RNA large subunit methyltransferase J [Roseovarius
nubinhibens ISM]
gi|83836914|gb|EAP76211.1| ribosomal RNA large subunit methyltransferase J [Roseovarius
nubinhibens ISM]
Length = 239
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 126/218 (57%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ +SS WL+RQ DPYV++A+ E YR R+AFK++E+D K +FL G +V+D G
Sbjct: 24 KTARGRRNSSTRWLQRQLNDPYVKRAQAEGYRGRAAFKIMELDDKFRFLVNGARVVDLGC 83
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W+QVAV +N+ G + G + VD + P+ GA DF + D++
Sbjct: 84 APGGWAQVAVPRINALGEKPGKAVGRFIGVDLQEVEPLAGA-EFHVLDFMEDGADDKVKE 142
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L + DVV+SDMA +++G ++ DH I L A A + G + K+ G
Sbjct: 143 WL-GGRADVVMSDMAASSSGHKQTDHLRIIALCEAAAYLAFDVLEEGGTFVSKVLAGGAE 201
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L++ + + +++V +KPP+SR S+E F++ GF+G
Sbjct: 202 GDLQKLLKQRFTKVANVKPPASRPDSSEKFVIATGFRG 239
>gi|119897677|ref|YP_932890.1| ribosomal RNA large subunit methyltransferase J [Azoarcus sp. BH72]
gi|143459390|sp|A1K598.1|RLME_AZOSB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|119670090|emb|CAL94003.1| ribosomal RNA large subunit methyltransferase j [Azoarcus sp. BH72]
Length = 205
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 119/208 (57%), Gaps = 9/208 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
++ +S W+ D YVQ+A E YR R+A+KL+EID + + LRPG V+D GAAPGSW
Sbjct: 3 RNKTSKAWMHEHLNDTYVQRANAEGYRARAAYKLMEIDERDRLLRPGRVVVDLGAAPGSW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
QVA + V S G VL++D LP+ P+ G L + DFT+ + L + L
Sbjct: 63 CQVARQRVGSDGR--------VLALDILPMDPVPGVDFL-QGDFTEDAVLAELESRLAGA 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +G+ +D L + FA + KPG L+K++ G +
Sbjct: 114 AVDLVLSDMAPNLSGVATVDQARSIYLCELALDFARRHLKPGGQFLVKVFQGEGFMGFRK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLG 223
++ + V++ KP +SR SAE++LLG
Sbjct: 174 AMDEVFLSVQVRKPKASRDRSAEVYLLG 201
>gi|424880159|ref|ZP_18303791.1| 23S rRNA methylase [Rhizobium leguminosarum bv. trifolii WU95]
gi|392516522|gb|EIW41254.1| 23S rRNA methylase [Rhizobium leguminosarum bv. trifolii WU95]
Length = 239
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 123/227 (54%), Gaps = 9/227 (3%)
Query: 5 TGPKLKEVPKGKDH--SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + K K SS WL+R DPYVQ+A+ E YR R+AFKLLEID K LR
Sbjct: 11 TGRKLGQRVKNKKMKASSRQWLERHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ S D + V ++D L + + G +L + DF
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTGSTDDDIR-----VAAIDFLEMTQLPGVKIL-QLDFLDQ 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L+ + D+V+SDMA TG DH L+ FAV G L
Sbjct: 125 TAPEKLLEAVGGTP-DLVISDMAAPTTGHHRTDHLRTMHLSEVAAHFAVEVLGEGGHFLT 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G +L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERELLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFKGR 230
>gi|119477411|ref|ZP_01617602.1| ribosomal RNA large subunit methyltransferase J [marine gamma
proteobacterium HTCC2143]
gi|119449337|gb|EAW30576.1| ribosomal RNA large subunit methyltransferase J [marine gamma
proteobacterium HTCC2143]
Length = 207
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 124/212 (58%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K ++S WLK F D YVQ+A++E YR R+ +KLLE++ K K ++ G+ V+D G+APG W
Sbjct: 4 KGNTSKGWLKEHFDDSYVQRAQREGYRSRACYKLLELNEKDKLIKAGMTVIDLGSAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +LV KG V++ D L + + G V + DFT + D ++ +L
Sbjct: 64 SQVAAELVGD--------KGRVIASDILKMDNLAG-VDFIQGDFTDQPVFDSIMEMLDGK 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +GM +D L + A +PG + + K++ G QL +
Sbjct: 115 EVDLVISDMAPNMSGMAAIDQPQSMYLVELALDMARQVLRPGGNFVAKVFQGEGFDQLLQ 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ ++ V+ KP +SR+ S E++ LGRGFK
Sbjct: 175 DMRISFNSVQSRKPAASRARSREVYQLGRGFK 206
>gi|414166467|ref|ZP_11422700.1| ribosomal RNA large subunit methyltransferase E [Afipia
clevelandensis ATCC 49720]
gi|410894602|gb|EKS42390.1| ribosomal RNA large subunit methyltransferase E [Afipia
clevelandensis ATCC 49720]
Length = 233
Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ +R R+A+KL E+D K + L+ G V+D GAAPG WSQ+
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGFRSRAAYKLQEMDDKHRLLKRGQVVVDLGAAPGGWSQI 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V S + KG V+++D L + + G V ++ DF + D+L ++ D
Sbjct: 82 AAKRVGSL-----EGKGKVVAIDLLDMPEVPG-VTFAQMDFLDDNAPDKLRAMIGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG R+ D I L + FA PG L K++ G L +
Sbjct: 135 VVMSDMAANTTGHRKTDQLRIIGLVESAAAFACEILNPGGTFLAKVFQGGADADLLVQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R ++ VK +KP +SR S+E ++L GF+G+
Sbjct: 195 RDFASVKHVKPAASRQDSSERYVLATGFRGE 225
>gi|341616215|ref|ZP_08703084.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Citromicrobium sp.
JLT1363]
Length = 225
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 118/210 (56%), Gaps = 11/210 (5%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV++AK YR R+AFKL+E+D K LR +++D G APG W+QV
Sbjct: 21 SSTRWLERQLNDPYVREAKAAGYRSRAAFKLIELDEKFGILRGSERIVDLGIAPGGWAQV 80
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A+K K+P+ ++ +D LP PI+G +L + DF + D ++ L D
Sbjct: 81 AIK---------KRPQARIVGIDLLPTEPIEGVTIL-EMDFMADEAPDAIMEHLGGAP-D 129
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N G ++ DH L FA+ PG L K+ G +L + +
Sbjct: 130 LVMSDMAANTVGHKQTDHLRTMGLVETAADFAIQTLAPGGQFLAKVLAGGTDAELLKLLK 189
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VK KPP+SR S+E +++ +GFKG
Sbjct: 190 QNFKTVKHAKPPASRKGSSEWYVVAQGFKG 219
>gi|226941815|ref|YP_002796889.1| FtsJ [Laribacter hongkongensis HLHK9]
gi|226716742|gb|ACO75880.1| FtsJ [Laribacter hongkongensis HLHK9]
Length = 205
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 118/212 (55%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL D +V A+KE YR R+A+KLLEI K K LRPG+ V D G+APGSW
Sbjct: 3 RSKTSAAWLNEHVHDHWVHMAQKEGYRSRAAYKLLEIHDKDKLLRPGMTVADLGSAPGSW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +V G V ++D L + I G V + DF + + D+ T+L
Sbjct: 63 SQVAAGIVGD--------SGRVFALDLLEMAAIPG-VDFIQGDFREDAVLDQFETLLAGR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+SDMAPN +GM +D L + FA ++ KPG L+K++ G
Sbjct: 114 PLDLVISDMAPNLSGMASIDQARAAYLCELALDFARSHLKPGGAFLVKVFQGSEFNDYLA 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ ++QV KP +SR SAE++LLG+G +
Sbjct: 174 AMRSGFTQVLSRKPKASRDRSAEIYLLGKGLR 205
>gi|229586405|ref|YP_002844906.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia africae
ESF-5]
gi|259494569|sp|C3PMK3.1|RLME_RICAE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|228021455|gb|ACP53163.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia africae
ESF-5]
Length = 227
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 5/213 (2%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ K + SS WL+RQ DPYV KA+ + +R R+A+KLLEI K K P +K++D GA
Sbjct: 16 KTSKKRTVSSSNWLRRQLNDPYVAKARMDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGA 75
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG WSQVA KL+ + + ++S+D L I + G + K DF + D ++ ++
Sbjct: 76 APGGWSQVASKLIKASDNNLNNK---IISIDVLEIEHVAGVEFVQK-DFFEADTEELIIQ 131
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L D + D+V+SDMA N G + DH L FA+ KP + KI+ G
Sbjct: 132 AL-DGRADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAE 190
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+L + R + VK KP SSRS S E++L+
Sbjct: 191 NELLYKVKREFKTVKHFKPSSSRSESTEIYLVA 223
>gi|351728204|ref|ZP_08945895.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax radicis N35]
Length = 220
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL D YV+ A KE +R R+A+KL EID ++ ++PG V+D G+ PG+WSQ +
Sbjct: 14 WLNDHVNDTYVKLAHKEGFRARAAYKLKEIDEQLGLIKPGYTVVDLGSTPGAWSQYLRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G + Q G ++++D LP+ PI+G ++ DF + D+ RL L +DVV+S
Sbjct: 74 MSPAGAAAGQLNGTIIALDLLPMEPIEGVTYIN-GDFREADVLGRLEAALDGKVVDVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D I L + FA + KP ++K++ G L + +
Sbjct: 133 DMAPNLSGIESADAARIAHLVELAVEFACNHLKPDGALVVKLFHGSGYSDLVTLFKQTFK 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK LKP +SR S+E FL+G G K
Sbjct: 193 VVKPLKPKASRDKSSETFLVGMGLK 217
>gi|15892128|ref|NP_359842.1| cell division protein ftsJ [Rickettsia conorii str. Malish 7]
gi|34580841|ref|ZP_00142321.1| cell division protein ftsJ [Rickettsia sibirica 246]
gi|374318946|ref|YP_005065444.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia slovaca
13-B]
gi|379018710|ref|YP_005294944.1| cell division protein ftsJ [Rickettsia rickettsii str. Hlp#2]
gi|379711947|ref|YP_005300286.1| cell division protein ftsJ [Rickettsia philipii str. 364D]
gi|383750844|ref|YP_005425945.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia slovaca
str. D-CWPP]
gi|81528508|sp|Q92J64.1|RLME_RICCN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|15619256|gb|AAL02743.1| cell division protein ftsJ [Rickettsia conorii str. Malish 7]
gi|28262226|gb|EAA25730.1| cell division protein ftsJ [Rickettsia sibirica 246]
gi|360041494|gb|AEV91876.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia slovaca
13-B]
gi|376328592|gb|AFB25829.1| cell division protein ftsJ [Rickettsia philipii str. 364D]
gi|376331290|gb|AFB28524.1| cell division protein ftsJ [Rickettsia rickettsii str. Hlp#2]
gi|379773858|gb|AFD19214.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia slovaca
str. D-CWPP]
Length = 227
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 114/205 (55%), Gaps = 5/205 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV KA+ + +R R+A+KLLEI K K P +K++D GAAPG WSQV
Sbjct: 24 SSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQV 83
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KL+ + + ++S+D L I + G + K DF + D ++ ++ L D + D
Sbjct: 84 ASKLIKASDNNLNNK---IISIDVLEIEHVAGVEFVQK-DFFEADTEELIIQAL-DGRAD 138
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N G + DH L FA+ KP + KI+ G +L +
Sbjct: 139 IVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVK 198
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
R + VK KP SSRS S E++L+
Sbjct: 199 REFKTVKHFKPSSSRSESTEIYLVA 223
>gi|347819407|ref|ZP_08872841.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 229
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 114/205 (55%), Gaps = 5/205 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A+KE YR R+A+KL E+D ++ +RPG V+D G PG+WSQ L
Sbjct: 14 WLNEHVNDPYVKLARKEGYRARAAYKLQEMDEQLGLIRPGYTVVDLGCTPGAWSQY---L 70
Query: 83 VNSHGYDSKQP-KGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVL 141
+ P G ++++D LP+ PI+G L DF P++++RL L +DVV+
Sbjct: 71 RRRMAAGAAGPLDGTIIALDILPMQPIEGVTYL-HGDFRAPEMRERLEQALNGRGVDVVV 129
Query: 142 SDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY 201
SDMAPN +G+ D + QL + FA + KP + K++ G L + +
Sbjct: 130 SDMAPNLSGIGSADAARMAQLVELALDFACKHLKPEGALVAKLFHGSGYSDLVSLFQQTF 189
Query: 202 SQVKILKPPSSRSHSAELFLLGRGF 226
+VK KP +SR SAE FL+GRG
Sbjct: 190 QRVKPFKPKASRGKSAETFLVGRGL 214
>gi|334129579|ref|ZP_08503383.1| Ribosomal RNA large subunit methyltransferase J [Methyloversatilis
universalis FAM5]
gi|333445264|gb|EGK73206.1| Ribosomal RNA large subunit methyltransferase J [Methyloversatilis
universalis FAM5]
Length = 210
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 122/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K+ +S W+ DPYV++A+ + +R R+AFKL++ID K + L PG V+D G+ PG W
Sbjct: 3 KNKTSRQWVHDHINDPYVKQAQAQGFRSRAAFKLMQIDDKDRLLAPGKVVVDLGSTPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV+ K V + G V+++D LP+ P+ G V DF + LV L+
Sbjct: 63 SQVSSKKVGASGK--------VVAIDLLPMEPVHG-VRFILGDFREDGPLGELVESLEGR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+VLSDMAPN +G+ D L + FA + K G D L+K++ G +L
Sbjct: 114 RVDLVLSDMAPNLSGIAVTDQARSIHLLELALEFAREHLKSGGDMLVKVFQGSGFDELRR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + ++ V + KP SSR SAE++LL RG +G+
Sbjct: 174 EMEQLFTSVAVRKPDSSRDRSAEVYLLCRGRRGE 207
>gi|312076799|ref|XP_003141023.1| ribosomal RNA methyltransferase [Loa loa]
Length = 244
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 122/221 (55%), Gaps = 15/221 (6%)
Query: 14 KGKDHSSHL-WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG------LKVL 66
K K ++ L +L++Q +D + +KA++ +YR RSA+KLLEI+ K K + PG + V+
Sbjct: 23 KSKKSTATLKYLRKQCSDEFSRKAREHSYRARSAYKLLEINEKYKIIEPGEFYFKCMVVV 82
Query: 67 DCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQD 126
D GAAPGSW QV +V + Y VL +D PI P+ G L D T +
Sbjct: 83 DVGAAPGSWCQVVADIVQPNVYGD----AFVLGIDLQPIMPVSGVNFLDLSDITAQKTHE 138
Query: 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS----KPGADCLI 182
+ +L +DVV+SDMAPN TG R +DH+ I L V+ +V S L
Sbjct: 139 NIKQLLNGRSVDVVISDMAPNPTGDRGIDHERILSLCGIVLELSVKKSVIPLVRNGTFLC 198
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
KIWDG R + E + R + +V +KP +SR HSAE++LL
Sbjct: 199 KIWDGPRREEFIERLKREFGKVYTVKPKASRDHSAEIYLLA 239
>gi|399546762|ref|YP_006560070.1| ribosomal RNA large subunit methyltransferase E [Marinobacter sp.
BSs20148]
gi|399162094|gb|AFP32657.1| Ribosomal RNA large subunit methyltransferase E [Marinobacter sp.
BSs20148]
Length = 206
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 125/213 (58%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS+ WL+ DP+V+KA+ + YR RS++KLLEI++K K ++P + V+D G+APG W
Sbjct: 3 RSKSSNRWLEEHVNDPFVKKAQMDGYRSRSSYKLLEINAKDKLIQPTMTVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA LV KG V++ D LP+ + G V + DFT+ + + ++ +L+D
Sbjct: 63 SQVATDLVGH--------KGRVIASDILPMDAVAG-VEFIQGDFTENAVFEEIMAVLRDA 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+DVV+SDMAPN +G+ D L + A K + K++ G +
Sbjct: 114 KVDVVISDMAPNISGVNAADQAASMYLIELALDMASQVLKSKGSFVAKVFHGGGYDGYVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + +V + KP SSR+ S E++L+G+GF+G
Sbjct: 174 AVREQFDKVVVRKPDSSRARSREVYLVGKGFRG 206
>gi|387128715|ref|YP_006297320.1| cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Methylophaga sp. JAM1]
gi|386275777|gb|AFI85675.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Methylophaga sp. JAM1]
Length = 205
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F DPYV+KA+++ YR R+ FKL EID K K +R G+ V+D G+APG WS
Sbjct: 6 SSTNWLKEHFDDPYVKKAQQKGYRSRATFKLEEIDQKDKLIRNGMSVVDLGSAPGGWSDY 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A+ V KG V+++D LP+ P+ G V + DF + + ++L +L +D
Sbjct: 66 ALHRVGD--------KGKVIALDILPMTPLTG-VHFIEGDFREDHVLEQLNEVLAGQSID 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPN TG+ +D L + FA+ D L+K++ G + + +
Sbjct: 117 LVLSDMAPNMTGVGAIDQPGSMYLVELALDFAINNLSKQGDFLVKVFQGEGFDEFLKFMR 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++V KP +SR+ S E++LLGRG K
Sbjct: 177 AHFNKVITRKPDASRARSREVYLLGRGLK 205
>gi|398998976|ref|ZP_10701730.1| 23S rRNA methylase [Pseudomonas sp. GM18]
gi|398132817|gb|EJM22074.1| 23S rRNA methylase [Pseudomonas sp. GM18]
Length = 209
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 124/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLKR DPYV++A+K+ YR R+++KLLE+ K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLGWLKRHVNDPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMSVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ ++ R++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDEVLTRILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G E+D L + A KPG + +IKI+ G +
Sbjct: 114 QVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAERILKPGGNFVIKIFQGEGFDVYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R + +++++KP SSR S E ++L G++G+
Sbjct: 174 DARRKFDKIQMIKPDSSRDSSREQYMLAWGYRGR 207
>gi|289207887|ref|YP_003459953.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio sp.
K90mix]
gi|288943518|gb|ADC71217.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio sp.
K90mix]
Length = 208
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 120/214 (56%), Gaps = 10/214 (4%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
+PK + SS WLK F DPYVQ+A++E YR R+ +KL EID + + L+PG++V+D GAA
Sbjct: 1 MPK-RSRSSQRWLKEHFDDPYVQRAQQEGYRGRAVYKLQEIDERDRLLKPGMRVVDLGAA 59
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
PG W+Q A + + G GLV S D LP+ P+ GA +++ DF + + ++
Sbjct: 60 PGGWTQYAAQKIGRKG-------GLVAS-DILPMDPVPGATIIT-GDFREDAVLQAILEA 110
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L + D+VLSDMAPN TG +D L + A P L+K++ G
Sbjct: 111 LDGQRADLVLSDMAPNLTGTDAIDQPRSIHLCELALELACDVLNPRGAMLVKLFQGEGSD 170
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R + +V++ KP +SR S E+++L RG
Sbjct: 171 AYLAEVRRRFEKVQVRKPQASRPRSREVYVLARG 204
>gi|126726913|ref|ZP_01742752.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
bacterium HTCC2150]
gi|126703871|gb|EBA02965.1| ribosomal RNA large subunit methyltransferase J [Rhodobacterales
bacterium HTCC2150]
Length = 235
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 126/224 (56%), Gaps = 19/224 (8%)
Query: 13 PKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAP 72
+G+ SS LWL+RQ DPYV++A+ + YR R+A+K+LE++ K FL G +V+D G AP
Sbjct: 23 ARGRKLSSTLWLQRQLNDPYVRRAQDDGYRGRAAYKILELNEKFNFLTAGARVVDLGCAP 82
Query: 73 GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL 132
G W QVAV VNS G S + G ++ VD + I G CD Q D D
Sbjct: 83 GGWCQVAVPRVNSLGTKSGKV-GKIVGVDLQVMESISG------CDLYQLDFMDEGA--- 132
Query: 133 KDDKL--------DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184
DDK+ DVV+SDMA +++G ++ DH I L A FA + G + K
Sbjct: 133 -DDKVKEWLGGKADVVMSDMAASSSGHKQTDHLKIMALCEAAAYFAFDVLEDGGTFIAKT 191
Query: 185 WDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
G L++ + + +++V +KPP+SR++S+E F++ GF+G
Sbjct: 192 LAGGAEGDLQKLLKQKFTKVANVKPPASRANSSEKFVVATGFRG 235
>gi|329120415|ref|ZP_08249081.1| ribosomal RNA large subunit methyltransferase J [Neisseria
bacilliformis ATCC BAA-1200]
gi|327462099|gb|EGF08427.1| ribosomal RNA large subunit methyltransferase J [Neisseria
bacilliformis ATCC BAA-1200]
Length = 228
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 114/210 (54%), Gaps = 9/210 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ SS WL+ D YV +A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGS
Sbjct: 25 ARSKSSKAWLREHVNDHYVHQAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGS 84
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQ A KL + G V ++D LP+ P+DG V + DF + D+ R +L
Sbjct: 85 WSQAAAKLAGASGK--------VFALDILPMEPVDG-VSFVQGDFREADVLARFEELLGG 135
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
LD+V+ DMAPN +G D L + FA KPG L+K + G P+
Sbjct: 136 RALDLVICDMAPNMSGHSVTDQAKSLCLCQLALDFARCRLKPGGSFLVKAFQGAGYPEFT 195
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGR 224
+ ++ V+ KP +SR S+E +LLG+
Sbjct: 196 AQMRETFATVQTRKPDASRGRSSETYLLGK 225
>gi|238650351|ref|YP_002916203.1| cell division protein ftsJ [Rickettsia peacockii str. Rustic]
gi|259494570|sp|C4K0Q4.1|RLME_RICPU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|238624449|gb|ACR47155.1| cell division protein ftsJ [Rickettsia peacockii str. Rustic]
Length = 227
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 114/205 (55%), Gaps = 5/205 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV KA+ + +R R+A+KLLEI K K P +K++D GAAPG WSQV
Sbjct: 24 SSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFIPNMKIVDLGAAPGGWSQV 83
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KL+ + + ++S+D L I + G + K DF + D ++ ++ L D + D
Sbjct: 84 ASKLIKASDNNLNNK---IISIDVLEIEHVAGVEFVQK-DFFEADTEELIIQAL-DGRAD 138
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N G + DH L FA+ KP + KI+ G +L +
Sbjct: 139 IVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVK 198
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
R + VK KP SSRS S E++L+
Sbjct: 199 REFKTVKHFKPSSSRSESTEIYLVA 223
>gi|157803350|ref|YP_001491899.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
canadensis str. McKiel]
gi|189040327|sp|A8EXN1.1|RLME_RICCK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|157784613|gb|ABV73114.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia
canadensis str. McKiel]
Length = 227
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 113/205 (55%), Gaps = 5/205 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS+ WL+RQ DPYV KA+ + +R R+A+KLLEI K K P +K++D GAAPG WSQ+
Sbjct: 24 SSNNWLRRQLNDPYVAKARTQGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQI 83
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KL+ + ++S+D L I PI G K DF + D + ++ L D K +
Sbjct: 84 ASKLIKA---SDNSLNNKIISIDLLEIRPIVGVEFFQK-DFFEEDTEKLIIQAL-DGKAN 138
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N G + DH L + FA+ KP + KI+ G +L +
Sbjct: 139 IVMSDMASNTIGHKATDHIRTLLLCEQALEFALKVLKPSGHFIAKIFRGGAENKLLNKVK 198
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
+ VK KP SSRS S E++L+
Sbjct: 199 HEFRTVKHFKPLSSRSESTEIYLVA 223
>gi|120553329|ref|YP_957680.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter aquaeolei
VT8]
gi|143460489|sp|A1TXM4.1|RLME_MARAV RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120323178|gb|ABM17493.1| 23S rRNA Um-2552 2'-O-methyltransferase [Marinobacter aquaeolei
VT8]
Length = 207
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 126/213 (59%), Gaps = 9/213 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ SS+ WL+ DP+V++A+++ YR R+++KLLEI++K + ++P V+D G+APG
Sbjct: 2 ARSKSSNRWLEEHVNDPFVKQAQQDGYRSRASYKLLEINNKDRLIKPTDLVVDLGSAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQVA KLV KG V++ D LP+ PI G V + DFT+ ++ D+++ IL
Sbjct: 62 WSQVAAKLVGH--------KGRVVASDILPMDPIAG-VEFIQGDFTEQEVFDQIMAILDG 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+ DVV+SDMAPN +G+ D L + A KP + K++ G +
Sbjct: 113 ARADVVISDMAPNISGVNAADQAASMYLVELALDMACQVLKPKGSFVAKVFHGEGYDEYV 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + +V I KP SSR+ S E++L+ +GF+
Sbjct: 173 KTVRESFDKVVIRKPDSSRARSREVYLVAKGFR 205
>gi|404378205|ref|ZP_10983302.1| ribosomal RNA large subunit methyltransferase E [Simonsiella
muelleri ATCC 29453]
gi|404295153|gb|EFG31757.2| ribosomal RNA large subunit methyltransferase E [Simonsiella
muelleri ATCC 29453]
Length = 249
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 123/210 (58%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS W+ DPYVQ+A+K+ YR R+A+KLLEI+ K K ++P + D G+APGSW
Sbjct: 47 RSKSSTTWMNEHVNDPYVQRAQKDGYRARAAYKLLEINEKDKIIKPNTVLADLGSAPGSW 106
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA+KLV +G V ++D LP+ IDG V + DF + D+ + ++L++
Sbjct: 107 SQVAIKLVGK--------QGKVFALDILPMEHIDG-VQFIQGDFREADVLAQFESLLENR 157
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G MD L + F+ + K G L+K++ G +
Sbjct: 158 PLDLVICDMAPNMSGNAVMDQARSYYLCELALDFSQNHLKTGGCFLVKVFQGSGYQEYLT 217
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
++ ++ V+ KP +SR+ S+E++LLG+
Sbjct: 218 AMRETFTVVQTRKPDASRNRSSEIYLLGKN 247
>gi|347526771|ref|YP_004833518.1| ribosomal RNA large subunit methyltransferase E [Sphingobium sp.
SYK-6]
gi|345135452|dbj|BAK65061.1| ribosomal RNA large subunit methyltransferase E [Sphingobium sp.
SYK-6]
Length = 234
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 116/216 (53%), Gaps = 11/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ S WL RQ DPYV++AK E YR R+A+KL+E+D K L+ V+D G APG
Sbjct: 16 RGRTAQSTRWLSRQLNDPYVKRAKAEGYRSRAAYKLIELDEKFGLLKGVRHVVDLGVAPG 75
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV K K P+ ++ +D LP+ PI G V L + DF + RL+ L
Sbjct: 76 GWAQVVRK---------KVPQAAIVGIDLLPVEPIAG-VTLLQMDFMADEAPGRLIAELG 125
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMA N G ++ DH L A FA+ KPG + K++ G L
Sbjct: 126 SAP-DLVMSDMAANTVGHQQTDHLRTMGLVEAAADFAMRTLKPGGAFVSKVFAGGTDDAL 184
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + VK KPPSSR S E F++ +GFKG+
Sbjct: 185 LRQLKAAFRTVKHAKPPSSRKGSVEWFVVAQGFKGQ 220
>gi|383483015|ref|YP_005391929.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
montanensis str. OSU 85-930]
gi|378935369|gb|AFC73870.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
montanensis str. OSU 85-930]
Length = 227
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 115/213 (53%), Gaps = 5/213 (2%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ K + SS WL+RQ DPYV K + + +R R+A+KLLEI K K P +K++D GA
Sbjct: 16 KTSKKRTVSSSNWLRRQLNDPYVAKTRMDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGA 75
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG WSQVA KL+ + D ++S+D L I P+ G K DF + + ++ ++
Sbjct: 76 APGGWSQVASKLIKASDNDLNNK---IISIDVLEIEPVAGVEFFQK-DFFEAETEELIIQ 131
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L D + D+V+SDMA N G + DH L FA+ KP + KI+ G
Sbjct: 132 AL-DGRADIVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAE 190
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+L + + VK KP SSRS S E++L+
Sbjct: 191 NELLNKVKLEFKTVKHFKPSSSRSESTEIYLVA 223
>gi|163758367|ref|ZP_02165455.1| probable cell division protein [Hoeflea phototrophica DFL-43]
gi|162284656|gb|EDQ34939.1| probable cell division protein [Hoeflea phototrophica DFL-43]
Length = 247
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 126/227 (55%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL ++V KGK SS W++R DPYVQ+A++E YR R+ +KLLEID+K K L
Sbjct: 9 TGRKLGQKVKKGKLKASSRRWVERHLNDPYVQQARQEGYRSRAVYKLLEIDTKHKILDKA 68
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPG WSQ++ K+ +S D K V+++D L + + G L + DF
Sbjct: 69 RRIIDLGAAPGGWSQISAKVTDSTDADPK-----VVAIDFLEMDGLPGVRFL-QMDFLD- 121
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
D R + DVVLSDMA TG R DH L FAV PG L
Sbjct: 122 DAAPRALMDALGGAPDVVLSDMAAPTTGHRRTDHLRTMHLCEVAAHFAVEVLAPGGHFLA 181
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G + L + + + V +KPPSSR+ S E+F+L +GFKG+
Sbjct: 182 KTFQGGSENDLLVMLKKNFKSVIHIKPPSSRAESVEMFVLAKGFKGR 228
>gi|254787193|ref|YP_003074622.1| ribosomal RNA large subunit methyltransferase J [Teredinibacter
turnerae T7901]
gi|237683719|gb|ACR10983.1| ribosomal RNA large subunit methyltransferase J [Teredinibacter
turnerae T7901]
Length = 206
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 122/212 (57%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SSH WL+ F+D YV+ ++K+ YR R+++KL+E+D+K K RPG+ V+D GAAPG W
Sbjct: 3 RSKSSHRWLREHFSDQYVKASQKDGYRSRASYKLIELDNKDKLFRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVAV+ + KG V++ D LP+ I G V + DFT+ + + L+ + +
Sbjct: 63 SQVAVQQIGD--------KGQVIASDILPMDSIAG-VTFIQGDFTEESVLEELLGAMDGE 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+V+SDMAPN +G+ +D L + A KPG + K++ G +
Sbjct: 114 RADLVISDMAPNMSGVTAVDQPKSMYLVELALDMAKQVLKPGGTFVCKVFHGEGFDDFFK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+S+ KP +SR+ S E++L+ +G+K
Sbjct: 174 DCNASFSKAVTRKPDASRARSREVYLVAKGYK 205
>gi|407008485|gb|EKE23848.1| hypothetical protein ACD_6C00312G0003 [uncultured bacterium]
Length = 216
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DPYV+KA+K+ YR R+A+KLLE+ K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRDWMREHLDDPYVKKAQKDGYRARAAYKLLEMQEKYKIIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV KGL+++ D LP+ + L + DF + ++ +L+ IL +D
Sbjct: 73 AGKLVGD--------KGLLIASDILPMDALPDVTFL-QGDFREEEVFQQLLEILDGRTVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G + +D L + FA P ++K++ G + + +
Sbjct: 124 VVISDMAPNTSGNKAVDQPRQIYLCELALDFANKVLGPKGQFVVKVFQGSGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTSKPLASRARSKEVFLIGQGRK 212
>gi|222147674|ref|YP_002548631.1| cell division protein [Agrobacterium vitis S4]
gi|254809545|sp|B9JSD2.1|RLME_AGRVS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|221734662|gb|ACM35625.1| cell division protein [Agrobacterium vitis S4]
Length = 261
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 123/227 (54%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL ++V KGK SS WL+R DPYVQ+AK E YR R+AFKLLEID K L+
Sbjct: 11 TGRKLGQKVKKGKLKASSRRWLERHINDPYVQRAKLEGYRARAAFKLLEIDEKHNILKGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A + S D + V ++D L + + G +L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAANVTGSTDSDIR-----VAAIDFLEMTQLPGVKIL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
L+ + DVV+SDMA TG ++ DH L FAV G L
Sbjct: 125 QAPALLMEAVGGVP-DVVISDMAAPTTGHQKTDHIRTMHLCEVAAYFAVEVLAEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP SSR S E+FLL +GFKG+
Sbjct: 184 KTFQGGTEKDLLNMLKQNFKQVIHIKPASSRQESVEMFLLAKGFKGR 230
>gi|398983408|ref|ZP_10690017.1| 23S rRNA methylase [Pseudomonas sp. GM24]
gi|399014419|ref|ZP_10716710.1| 23S rRNA methylase [Pseudomonas sp. GM16]
gi|398110984|gb|EJM00876.1| 23S rRNA methylase [Pseudomonas sp. GM16]
gi|398157309|gb|EJM45705.1| 23S rRNA methylase [Pseudomonas sp. GM24]
Length = 209
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 124/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLKR DPYV++A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLGWLKRHVNDPYVKQAQKDGYRSRASYKLLEIQEKYKLIRPGMSVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ ++ R++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDEVLGRILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G E+D L + A KPG + +IKI+ G +
Sbjct: 114 QVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAERILKPGGNFVIKIFQGEGFDVYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +++++KP SSR S E ++L G++G+
Sbjct: 174 DARKKFDKIQMIKPDSSRGSSREQYMLAWGYRGR 207
>gi|308448693|ref|XP_003087724.1| hypothetical protein CRE_21701 [Caenorhabditis remanei]
gi|308253263|gb|EFO97215.1| hypothetical protein CRE_21701 [Caenorhabditis remanei]
Length = 207
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 9/204 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKHKMIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV KGLV++ D L + + L + DF + ++ ++L+ IL +D
Sbjct: 73 AGKLVGD--------KGLVIASDILEMDALPDVTFL-QGDFREEEVFEKLLNILNGRTVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G R +D L + FA P L+K++ G + +
Sbjct: 124 VVISDMAPNTSGNRAVDQPRQIYLCELALDFANKVLGPKGQFLVKVFQGTGFDEFRKHFV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLL 222
+ +K KP +SR+ S E+FL+
Sbjct: 184 DIFDVLKTAKPAASRARSKEVFLI 207
>gi|398840283|ref|ZP_10597520.1| 23S rRNA methylase [Pseudomonas sp. GM102]
gi|398856604|ref|ZP_10612324.1| 23S rRNA methylase [Pseudomonas sp. GM79]
gi|398110871|gb|EJM00765.1| 23S rRNA methylase [Pseudomonas sp. GM102]
gi|398242991|gb|EJN28590.1| 23S rRNA methylase [Pseudomonas sp. GM79]
Length = 209
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 124/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLKR DPYV++A+K+ YR R+++KLLE+ K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLGWLKRHVNDPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMSVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFTQ ++ +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTQDEVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G E+D L + A KPG + +IK++ G +
Sbjct: 114 QVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAARILKPGGNFVIKVFQGEGFDAYVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V+++KP SSR S E ++L G++G+
Sbjct: 174 DARQKFDKVQMIKPDSSRGSSREQYMLAWGYRGR 207
>gi|221066109|ref|ZP_03542214.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
KF-1]
gi|264679344|ref|YP_003279251.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
CNB-2]
gi|299532303|ref|ZP_07045696.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
S44]
gi|220711132|gb|EED66500.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
KF-1]
gi|262209857|gb|ACY33955.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
CNB-2]
gi|298719711|gb|EFI60675.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
S44]
Length = 220
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A+K+ YR R+A+KL EID +K ++PG V+D G APG+WSQ +
Sbjct: 14 WLHDHINDPYVKAAQKDGYRARAAYKLKEIDESLKLIQPGHTVVDLGCAPGAWSQYVRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G + G ++S+D LP+ PI+G V + DF + + +L + K DVV+S
Sbjct: 74 LSPSGAAVGELNGRIISLDLLPMEPIEG-VHYIQGDFREEAVLAQLEEAMGGGKADVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G D + L + FA+ KP ++K++ G +L + + +
Sbjct: 133 DMAPNLSGHGATDGARVAVLIEMAVDFAINNMKPEGALVVKLFHGSGYNELVDLFKQTFK 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK +KP +SR SAE+FL+G G K
Sbjct: 193 VVKPIKPKASRDRSAEIFLVGMGLK 217
>gi|87119799|ref|ZP_01075696.1| cell division protein FtsJ [Marinomonas sp. MED121]
gi|86165275|gb|EAQ66543.1| cell division protein FtsJ [Marinomonas sp. MED121]
Length = 196
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 122/205 (59%), Gaps = 9/205 (4%)
Query: 24 LKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLV 83
+K F D YV++++++ YR R+++KL+EI+ K K L+ G+KV+D GAAPG WSQ+A +L+
Sbjct: 1 MKEHFDDVYVKRSQQDGYRSRASYKLIEINDKDKLLKSGMKVVDLGAAPGGWSQIAGRLI 60
Query: 84 NSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD 143
KG V++ D L + P+ G V + DFT+ D+ ++ + D+ D+V+SD
Sbjct: 61 GD--------KGRVVASDILEMAPLPG-VTFVQGDFTEDDVYQEILKAIGDEHADLVISD 111
Query: 144 MAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQ 203
MAPN +G +D L + A +PG + L+K++ G + +++ ++
Sbjct: 112 MAPNMSGNSAVDQPQSMYLVELALDMASQVLRPGGNFLVKVFQGEGFDEYLKTMRGMFTS 171
Query: 204 VKILKPPSSRSHSAELFLLGRGFKG 228
V KP SSR+ S E++LLGR FKG
Sbjct: 172 VVTRKPESSRARSREVYLLGRQFKG 196
>gi|345869528|ref|ZP_08821485.1| Ribosomal RNA large subunit methyltransferase E [Thiorhodococcus
drewsii AZ1]
gi|343922911|gb|EGV33608.1| Ribosomal RNA large subunit methyltransferase E [Thiorhodococcus
drewsii AZ1]
Length = 206
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 119/211 (56%), Gaps = 9/211 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL R DPYV++++ + YR R+A+KLLEI K + L PG++V+D GAAPGSW
Sbjct: 3 RSKSSRRWLDRHVNDPYVKRSQVDGYRSRAAYKLLEIQEKDRVLSPGMRVVDLGAAPGSW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+AV+LV + KG V+++D LP+ P+ G +L + DF + L L D
Sbjct: 63 SQIAVQLVGA--------KGRVIALDILPMDPLAGVEIL-EGDFRDDAVLSELRVALGQD 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+VLSDMAPN TG +D L + A KPG ++K + G
Sbjct: 114 PLDLVLSDMAPNITGTSIVDQSRSMYLLELALELAREQLKPGGAMVVKAFQGTGFDAYLR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+ + QV KP SSR+ S EL+L+ +GF
Sbjct: 174 DLRGSFRQVASRKPKSSRAQSRELYLVAKGF 204
>gi|383483549|ref|YP_005392462.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia parkeri
str. Portsmouth]
gi|378935903|gb|AFC74403.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia parkeri
str. Portsmouth]
Length = 227
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 114/205 (55%), Gaps = 5/205 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV KA+ + +R R+A+KLLEI K K P +K++D GAAPG WSQV
Sbjct: 24 SSSNWLRRQLNDPYVAKARIDGFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQV 83
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KL+ + + ++S+D L I + G + K DF + D ++ ++ L D + D
Sbjct: 84 ASKLIKASDNNLNNK---IISIDVLEIEHVAGVEFVQK-DFFEADTEELIIQAL-DGRAD 138
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N G + DH L FA+ KP + KI+ G +L +
Sbjct: 139 IVMSDMASNTIGHKATDHIRTLLLCEQAFEFALKVLKPSGHFIAKIFRGGAENELLHKVK 198
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
R + V+ KP SSRS S E++L+
Sbjct: 199 REFKTVQHFKPSSSRSESTEIYLVA 223
>gi|325265685|ref|ZP_08132374.1| ribosomal RNA large subunit methyltransferase J [Kingella
denitrificans ATCC 33394]
gi|324982816|gb|EGC18439.1| ribosomal RNA large subunit methyltransferase J [Kingella
denitrificans ATCC 33394]
Length = 213
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 118/209 (56%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS W+ DPYVQ+A+K+ YR R+A+KLLEI+ K K ++ G + D G+APGSW
Sbjct: 11 RSKSSPAWMHEHVNDPYVQRAQKDGYRARAAYKLLEINEKDKLIKSGTLLADLGSAPGSW 70
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KLV P G V ++D LP+ IDG V + DF + ++ + +L +
Sbjct: 71 SQVAAKLVG--------PSGQVFALDILPMERIDG-VDFIQGDFREDEVLRQFENLLGNR 121
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + KPG LIK++ G +
Sbjct: 122 PLDLVICDMAPNMSGNAVTDQARSYYLCELALDFARNHLKPGGSFLIKVFQGAGYQEYLA 181
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
+ + V+ KP +SR+ S+E++LLG+
Sbjct: 182 EMRSLFQTVQTRKPDASRNRSSEIYLLGK 210
>gi|114798748|ref|YP_760506.1| putative ribosomal RNA large subunit methyltransferase J
[Hyphomonas neptunium ATCC 15444]
gi|123028016|sp|Q0C187.1|RLME_HYPNA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|114738922|gb|ABI77047.1| putative ribosomal RNA large subunit methyltransferase J
[Hyphomonas neptunium ATCC 15444]
Length = 234
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 121/212 (57%), Gaps = 12/212 (5%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS W++RQ DPYV+KAK E YR R+A+KLLEID+ K LR G++V+D G APG W
Sbjct: 34 RTESSKRWIERQLQDPYVRKAKDEGYRSRAAYKLLEIDAAAKILRKGMRVVDLGCAPGGW 93
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
QV++ +Q V+ +D LP+ PI+GA ++ + D PD R++ L
Sbjct: 94 IQVSL----------QQGAAEVVGIDLLPLDPIEGATII-EGDVNNPDDVARMMAGLSGT 142
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D++LSDMA N TG ++ DH L + FA+ + G K++ G +
Sbjct: 143 P-DLILSDMAANTTGHKQTDHLRTVALVEMAVAFAIEHLDDGGAFCAKVFQGGATKDVLN 201
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + VK +KP +SR+ S E++++ +GF+
Sbjct: 202 LLKQHFRTVKHIKPAASRAGSPEIYVVAKGFR 233
>gi|254491856|ref|ZP_05105035.1| ribosomal RNA large subunit methyltransferase J [Methylophaga
thiooxidans DMS010]
gi|224463334|gb|EEF79604.1| ribosomal RNA large subunit methyltransferase J [Methylophaga
thiooxydans DMS010]
Length = 205
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 119/212 (56%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS WLK F D YV+KA+KE +R R+ FKL EID K K LRPG+ V+D GAAPG W
Sbjct: 3 KSKSSQGWLKEHFDDQYVKKAQKEGHRSRATFKLDEIDQKDKLLRPGMSVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
S A + V G V+++D LP+ P+ G V + DF + ++ D L +L
Sbjct: 63 SDYAFRKVGD--------SGTVVALDILPMTPLTG-VHFIEGDFREDEVLDELNKVLNGR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+VLSDMAPN +G+ +D L + FAV L+K++ G +
Sbjct: 114 EIDLVLSDMAPNMSGVGSIDQPASMYLVELALDFAVNNLSKQGCFLVKVFQGEGFDAYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +++V KP +SR+ S E++LLG+G K
Sbjct: 174 QMRDSFNKVVTRKPGASRARSREVYLLGKGLK 205
>gi|113868416|ref|YP_726905.1| 23S rRNA methylase [Ralstonia eutropha H16]
gi|339326470|ref|YP_004686163.1| ribosomal RNA large subunit methyltransferase E [Cupriavidus
necator N-1]
gi|122946743|sp|Q0K8Y4.1|RLME_CUPNH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|113527192|emb|CAJ93537.1| 23S rRNA methylase [Ralstonia eutropha H16]
gi|338166627|gb|AEI77682.1| ribosomal RNA large subunit methyltransferase E [Cupriavidus
necator N-1]
Length = 221
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 122/219 (55%), Gaps = 6/219 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ +H WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNKFNHSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ A KL +S + G V+++D LP+ P+ V + DF + + L +++
Sbjct: 62 WSQYARNKLADSPRAKDGRIDGAVVAIDLLPMEPV-ADVTFIQGDFREESVFRELESVVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D +K+D+VLSDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 DASGGNKIDLVLSDMAPNLSGVAFADAARIEYLCDLALEFAQAHLKPEGALLVKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
Q+ E R + V KP +SR S+E F+LGR K
Sbjct: 181 YSQIVEKFKRHFKVVAKRKPKASRDKSSETFILGRYLKA 219
>gi|194290076|ref|YP_002005983.1| ribosomal RNA large subunit methyltransferase j [Cupriavidus
taiwanensis LMG 19424]
gi|226703293|sp|B3R1S2.1|RLME_CUPTR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|193223911|emb|CAQ69920.1| Ribosomal RNA large subunit methyltransferase J [Cupriavidus
taiwanensis LMG 19424]
Length = 221
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 122/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ +H WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNKFNHSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ A KL +S + G V+++D LP+ P+ V + DF + + L +++
Sbjct: 62 WSQYARNKLADSPRARDGRIDGAVVAIDLLPMEPV-ADVTFIQGDFREESVFRELESVVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D +K+D+VLSDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 DASGGNKIDLVLSDMAPNLSGVASADAARIEYLCDLALEFAQAHLKPEGALLVKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E F+LGR K
Sbjct: 181 YSQIVEKFKRQFKVVAKRKPKASRDKSSETFILGRYLK 218
>gi|395784652|ref|ZP_10464474.1| ribosomal RNA large subunit methyltransferase E [Bartonella
melophagi K-2C]
gi|395421912|gb|EJF88134.1| ribosomal RNA large subunit methyltransferase E [Bartonella
melophagi K-2C]
Length = 238
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + K L+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLVEINERYKILKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V S + ++P V+ +D L + P+ G V+L + DF + +L+++L K D
Sbjct: 94 AARIVGS---NDQRPS--VVGIDYLRVDPLPGVVML-EMDFFHENAPQQLISVL-GAKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L + FA++ KPG L K + G L +
Sbjct: 147 VVLSDMAAPMTGHRQTDHLRTIYLCESAADFAISVLKPGGHFLAKTFQGGAENTLLTKLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SR+ S EL+L+ K K
Sbjct: 207 QNFKTVHHVKPPASRAESIELYLVALKLKEK 237
>gi|395780998|ref|ZP_10461442.1| ribosomal RNA large subunit methyltransferase E [Bartonella
washoensis 085-0475]
gi|395416873|gb|EJF83235.1| ribosomal RNA large subunit methyltransferase E [Bartonella
washoensis 085-0475]
Length = 242
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 119/211 (56%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + KFL+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V S ++P V+ +D L + P+ G V+L + DF D +L+ L K D
Sbjct: 94 AGRIVGS---SDEKPS--VVGIDYLHVDPLPGVVML-EMDFLHADAPQKLIDAL-GTKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L FA++ +P L K + G L +
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTIYLCEVAADFALSVLRPRGHFLAKAFQGGAENTLLNKLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SR S EL+LL FK K
Sbjct: 207 QNFKTVHHVKPPASRMESVELYLLALEFKAK 237
>gi|73541859|ref|YP_296379.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia eutropha
JMP134]
gi|83305667|sp|Q46Z98.1|RLME_CUPPJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|72119272|gb|AAZ61535.1| 23S rRNA Um-2552 2'-O-methyltransferase [Ralstonia eutropha JMP134]
Length = 225
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 122/219 (55%), Gaps = 6/219 (2%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPG
Sbjct: 5 KSKNKFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIQPGQVIVDLGAAPG 64
Query: 74 SWSQVA-VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL 132
SWSQ A KL S +P G V+++D LP+ P+ V + DF + D+ +L ++
Sbjct: 65 SWSQYARNKLAASPRATGGKPDGAVVAIDILPMEPV-ADVTFIQGDFREEDVFRQLEEVV 123
Query: 133 ----KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188
K+D+VLSDMAPN +G+ D I L + FA T+ KP L+K + G
Sbjct: 124 MAASGGAKIDLVLSDMAPNLSGVASADSARIEYLCDLALDFAQTHLKPDGALLVKCFHGS 183
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E F+LGR K
Sbjct: 184 GYSQIVEKFKRQFKVVAPRKPKASRDKSSETFILGRYLK 222
>gi|21231165|ref|NP_637082.1| cell division protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66768827|ref|YP_243589.1| cell division protein [Xanthomonas campestris pv. campestris str.
8004]
gi|21112804|gb|AAM41006.1| cell division protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574159|gb|AAY49569.1| cell division protein [Xanthomonas campestris pv. campestris str.
8004]
Length = 212
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK FADP+V+KA+ E R R+A+KL E+ + + L+PG+ V+D GAAPG W
Sbjct: 6 RSKSSQRWLKEHFADPFVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGW 65
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K + + G V+++D L + P+ G L DF + + +L D
Sbjct: 66 SQQVRKSMGASGR--------VVALDILEMPPLAGVEFLH-GDFREQAVLSEFEAMLGDV 116
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GM +D + LA + FA T+ K G LIK++ G
Sbjct: 117 PVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKVGGAFLIKLFQGVGSDDYIR 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR SAE+++LG+G
Sbjct: 177 ELRRRYEKVTIRKPAASRKRSAEVYVLGQG 206
>gi|188991942|ref|YP_001903952.1| cell division protein FtsJ [Xanthomonas campestris pv. campestris
str. B100]
gi|384427600|ref|YP_005636959.1| ribosomal RNA large subunit methyltransferase J [Xanthomonas
campestris pv. raphani 756C]
gi|83305668|sp|Q4UTQ4.2|RLME_XANC8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83305669|sp|Q8P9Y1.2|RLME_XANCP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705321|sp|B0RTZ3.1|RLME_XANCB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|167733702|emb|CAP51907.1| Cell division protein FtsJ [Xanthomonas campestris pv. campestris]
gi|341936702|gb|AEL06841.1| ribosomal RNA large subunit methyltransferase J [Xanthomonas
campestris pv. raphani 756C]
Length = 210
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK FADP+V+KA+ E R R+A+KL E+ + + L+PG+ V+D GAAPG W
Sbjct: 4 RSKSSQRWLKEHFADPFVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K + + G V+++D L + P+ G L DF + + +L D
Sbjct: 64 SQQVRKSMGASGR--------VVALDILEMPPLAGVEFLH-GDFREQAVLSEFEAMLGDV 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GM +D + LA + FA T+ K G LIK++ G
Sbjct: 115 PVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKVGGAFLIKLFQGVGSDDYIR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR SAE+++LG+G
Sbjct: 175 ELRRRYEKVTIRKPAASRKRSAEVYVLGQG 204
>gi|160872297|ref|ZP_02062429.1| ribosomal RNA large subunit methyltransferase J [Rickettsiella
grylli]
gi|159121096|gb|EDP46434.1| ribosomal RNA large subunit methyltransferase J [Rickettsiella
grylli]
Length = 209
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 9/208 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL F DPYV++AKKE +R RSA+KLLEI K K ++PG+ ++D GAAPG WSQ+
Sbjct: 7 SSQRWLNEHFKDPYVKRAKKEGFRSRSAYKLLEIQEKTKLIKPGMVIVDLGAAPGGWSQI 66
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +LV + G V ++D LP+ + V + DF + + +L+ ++ +D
Sbjct: 67 ASRLVGTTGK--------VYALDILPMETLT-PVEFLQGDFREESVIKQLLQRIQSKPID 117
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+R +D LA + FA KP ++K + G+ + +
Sbjct: 118 LVISDMAPNFSGIRSVDQPRAIFLAELALDFAKKVLKPKGYFVVKAFQGKGFEAFLKELR 177
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGF 226
++ V I KP +SR S E++L+ G+
Sbjct: 178 SLFANVTIRKPSASRGRSTEVYLVAIGY 205
>gi|148261003|ref|YP_001235130.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidiphilium cryptum
JF-5]
gi|326404403|ref|YP_004284485.1| ribosomal RNA large subunit methyltransferase J [Acidiphilium
multivorum AIU301]
gi|338990646|ref|ZP_08634478.1| Ribosomal RNA large subunit methyltransferase J [Acidiphilium sp.
PM]
gi|189044083|sp|A5G029.1|RLME_ACICJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|146402684|gb|ABQ31211.1| 23S rRNA Um-2552 2'-O-methyltransferase [Acidiphilium cryptum JF-5]
gi|325051265|dbj|BAJ81603.1| ribosomal RNA large subunit methyltransferase J [Acidiphilium
multivorum AIU301]
gi|338205457|gb|EGO93761.1| Ribosomal RNA large subunit methyltransferase J [Acidiphilium sp.
PM]
Length = 225
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 116/209 (55%), Gaps = 12/209 (5%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL RQ DPYV AK+ +R R+AFKL+E+D K + G +V+D GAAPG W+QV
Sbjct: 25 SSQKWLLRQLNDPYVAAAKERGFRSRAAFKLIELDEKFGLIGKGARVVDLGAAPGGWTQV 84
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A++ S V+ +D L I PI GA ++ K DF ++ L IL D
Sbjct: 85 ALERGASR----------VVGIDLLDIDPIAGATLI-KGDFQDESMETALAEIL-GGPAD 132
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN TG DH I LA + FA + PG + K++ G + + +
Sbjct: 133 VVMSDMAPNTTGHTATDHLRIMGLAELALDFAFKHLAPGGAFVTKLFQGGAQGDMLNLLK 192
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
R ++QV+ KP +SR S EL+L+ G++
Sbjct: 193 RRFAQVRHAKPEASRKDSRELYLVATGYR 221
>gi|319408132|emb|CBI81785.1| cell division protein ftsJ [Bartonella schoenbuchensis R1]
Length = 241
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 122/211 (57%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + K L+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYKILKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V S + ++P V+ +D L + P+ G V+L + DF + +L++ L K D
Sbjct: 94 AARIVGS---NDQRPS--VVGIDYLHVDPLPGVVML-EMDFFHENAPQQLISAL-GAKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L + FA++ KPG L K + G L +
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTVYLCESAADFAISVLKPGGHFLAKTFQGGAENALLTKLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +KPP+SR+ S EL+L+ K K
Sbjct: 207 QNFKTIHHVKPPASRAESVELYLVALKLKEK 237
>gi|410693994|ref|YP_003624616.1| putative Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
methyltransferase) (Cell division protein ftsJ)
[Thiomonas sp. 3As]
gi|294340419|emb|CAZ88800.1| putative Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
methyltransferase) (Cell division protein ftsJ)
[Thiomonas sp. 3As]
Length = 216
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 119/212 (56%), Gaps = 5/212 (2%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K+ S WL+ DPYV+ A++E YR R+A+KL EID LRPG V+D G+ PGSW
Sbjct: 6 KNKFSKAWLQDHLNDPYVKMAQREGYRARAAYKLKEIDEAEGLLRPGQIVVDLGSTPGSW 65
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ A + G +G +LS+D LP+ P+ L DF + + ++L +L+
Sbjct: 66 SQYARNRLMRGG----AVQGTILSLDLLPMEPVPDVHFLL-GDFREEAVVNQLEALLEGR 120
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+DVVLSDMAPN TG+ D I L+ + FA + +P +IK + G Q+ +
Sbjct: 121 KVDVVLSDMAPNLTGIPSADAARIEHLSELALDFAQRWLQPQGAMVIKTFHGSYYSQIVK 180
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + QVK +KP +SR SAE F+L R K
Sbjct: 181 AFKLVFQQVKAVKPQASRDKSAETFILARTLK 212
>gi|93006845|ref|YP_581282.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychrobacter
cryohalolentis K5]
gi|122414928|sp|Q1Q955.1|RLME_PSYCK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|92394523|gb|ABE75798.1| 23S rRNA Um-2552 2'-O-methyltransferase [Psychrobacter
cryohalolentis K5]
Length = 210
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 120/205 (58%), Gaps = 9/205 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W+K D YVQKA+K+ YR R+A+KLLEI+ K ++ G+ V+D G+APGSWSQV
Sbjct: 13 SSSAWMKEHIDDHYVQKAQKDGYRARAAYKLLEINEKTNLIKKGMTVVDLGSAPGSWSQV 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A LV KG++++ D LP+ + V + DF +P++ DR++ + D ++D
Sbjct: 73 AGHLVGE--------KGILIASDILPMDTLPD-VTFIQGDFREPEVFDRIMAEVGDRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMAPN G +D + L + FA+ G ++K++ G +L + +
Sbjct: 124 VVLSDMAPNTAGNSAIDQPRMMYLCELAVDFALATLPEGGALIMKVFQGEGTQELRKQMQ 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
+S+++ +KP +SR S E+F +
Sbjct: 184 ADFSKIRSIKPGASRPRSKEIFWIA 208
>gi|262376626|ref|ZP_06069854.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
lwoffii SH145]
gi|262308336|gb|EEY89471.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
lwoffii SH145]
Length = 216
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DPYV+KA+K+ YR R+A+KLLE+ K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRDWMREHLDDPYVKKAQKDGYRARAAYKLLEMQEKYKIIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV KGL+++ D LP+ + L + DF + ++ +L+ IL +D
Sbjct: 73 AGKLVGD--------KGLLIASDILPMDALPDVTFL-QGDFREEEVFQQLLEILDGRIVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G + +D L + FA P ++K++ G + + +
Sbjct: 124 VVISDMAPNTSGNKAVDQPRQIYLCELALDFANKVLGPKGQFVVKVFQGSGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTSKPLASRARSKEVFLIGQGRK 212
>gi|254294177|ref|YP_003060200.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hirschia baltica ATCC
49814]
gi|254042708|gb|ACT59503.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hirschia baltica ATCC
49814]
Length = 251
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 124/209 (59%), Gaps = 11/209 (5%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++RQ DPYV++A + +R R+A+KLLE+D K L+ +V+D G APGSW+QV
Sbjct: 49 SSRAWIERQLNDPYVRRAHEAGWRARAAYKLLELDEKFGLLKNTQRVVDLGCAPGSWTQV 108
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
++ +H V+ +D LP+ PI GA ++ + D P+ ++++L+ K
Sbjct: 109 LMQKYGAH---------YVVGIDLLPVDPIAGAHLI-EGDVNDPEAMAEMMSVLQ-GKPT 157
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG ++ DH QLA ++FA+ + G + K++ G + +L+ +
Sbjct: 158 LVLSDMAAATTGHKQTDHVRTVQLAEMAVQFAIDNLEVGGNFCTKVFQGGAQGELKALMD 217
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++VK KPPSSR+ S E+F + GFK
Sbjct: 218 ANFAEVKYWKPPSSRAGSPEMFAVALGFK 246
>gi|410623395|ref|ZP_11334209.1| ribosomal RNA large subunit methyltransferase E [Glaciecola
pallidula DSM 14239 = ACAM 615]
gi|410156997|dbj|GAC29583.1| ribosomal RNA large subunit methyltransferase E [Glaciecola
pallidula DSM 14239 = ACAM 615]
Length = 206
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S W+ DPYV+KAK + YR R+++K++EI+ K K +R G V+D G+APG W
Sbjct: 3 RSKTSKQWMDEHVNDPYVKKAKIDGYRSRASYKIIEINEKDKIIRAGNIVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV LV + G V++ D LP+ I G V + DFT+ + D +++ L D
Sbjct: 63 SQVVAPLVGASG--------RVIASDILPMDGIIG-VTFIQGDFTEAAVYDNILSTLNGD 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+DVV+SDM+PN +G+ D L + A KPG K++ G + +
Sbjct: 114 KVDVVVSDMSPNLSGVNTTDQYSSIYLVELALDMARNVLKPGGSFCAKVFQGVGYEEYAK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + +V + KP +SR+ S E++++G+GFKG
Sbjct: 174 EVRKSFDKVVVRKPDASRARSREVYIVGKGFKG 206
>gi|89054472|ref|YP_509923.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Jannaschia sp. CCS1]
gi|122498740|sp|Q28QW4.1|RLME_JANSC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|88864021|gb|ABD54898.1| 23S rRNA Um-2552 2'-O-methyltransferase [Jannaschia sp. CCS1]
Length = 237
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 128/219 (58%), Gaps = 2/219 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV A+++ YR R+A+K++++D K +FL PG +V+D G
Sbjct: 18 KTARGRKLSSTRWLERQLNDPYVAAARRDGYRGRAAYKIIDLDDKYRFLVPGARVVDLGC 77
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAVK VN+ G S + G ++ +D + PI G L + DF + D ++
Sbjct: 78 APGGWCQVAVKRVNALGEKSGKAVGRIIGLDLQEMEPIAG-CELHQLDFMEDDADLKVKD 136
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L + DVV+SDMA +A+G ++ DH I L A A +PG + K+ G
Sbjct: 137 WL-GGRADVVMSDMAASASGHKQTDHMRIMALCEAAAELAFDVLEPGGTFVAKVLAGGAE 195
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
L+ + + + +V +KP +SR+ S+E F++ GF+G+
Sbjct: 196 GTLQRLLKQRFKKVANVKPGASRADSSEKFVVATGFRGR 234
>gi|143459181|sp|A1W8H0.2|RLME_ACISJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
Length = 220
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 120/205 (58%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL D YV+ A+KE YR R+A+KL EID ++ ++PG V+D G++PG+WSQ +
Sbjct: 14 WLHDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGHVVVDLGSSPGAWSQYVRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G Q G+++++D LP+ PI+G L + DF + ++ L ++ +DVV+S
Sbjct: 74 LSPDGAAVGQLNGVIIALDILPMEPIEGVTFL-QGDFREEEVLAGLQEAVQARPVDVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ +D I L + FAV + KP ++K++ G QL + +
Sbjct: 133 DMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPEGALVVKLFHGSGYSQLVQLFKDTFR 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK +KP +SR S+E FL+G G K
Sbjct: 193 VVKPMKPKASRDKSSETFLVGMGLK 217
>gi|319763183|ref|YP_004127120.1| ribosomal RNA methyltransferase rrmj/ftsj [Alicycliphilus
denitrificans BC]
gi|330825246|ref|YP_004388549.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alicycliphilus
denitrificans K601]
gi|317117744|gb|ADV00233.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alicycliphilus
denitrificans BC]
gi|329310618|gb|AEB85033.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alicycliphilus
denitrificans K601]
Length = 220
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 118/205 (57%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL D YV+ A+KE YR R+A+KL EID + ++PG V+D G++PG+WSQ +
Sbjct: 14 WLNDHVNDTYVKLAQKEGYRARAAYKLKEIDEQFGLIKPGHVVVDLGSSPGAWSQYVRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G Q G ++S+D LP+ PI+G L + DF ++ RL ++ +DVV+S
Sbjct: 74 LSPGGAAMGQLDGTIISLDILPMEPIEGVTFL-QGDFRDEEVLARLQQAVQGRPVDVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ +D I L + FAV + KP ++K++ G QL + +
Sbjct: 133 DMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPDGALVVKLFHGSGYTQLVQLFKDTFR 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK +KP +SR S+E FL+G G K
Sbjct: 193 VVKPVKPKASRDKSSETFLVGIGLK 217
>gi|121594725|ref|YP_986621.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax sp. JS42]
gi|120606805|gb|ABM42545.1| 23S rRNA Um-2552 2'-O-methyltransferase [Acidovorax sp. JS42]
Length = 237
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 120/205 (58%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL D YV+ A+KE YR R+A+KL EID ++ ++PG V+D G++PG+WSQ +
Sbjct: 31 WLHDHVNDTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGHVVVDLGSSPGAWSQYVRRR 90
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G Q G+++++D LP+ PI+G L + DF + ++ L ++ +DVV+S
Sbjct: 91 LSPDGAAVGQLNGVIIALDILPMEPIEGVTFL-QGDFREEEVLAGLQEAVQARPVDVVVS 149
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ +D I L + FAV + KP ++K++ G QL + +
Sbjct: 150 DMAPNLSGVESVDAVRIAHLIELAVDFAVHHLKPEGALVVKLFHGSGYSQLVQLFKDTFR 209
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK +KP +SR S+E FL+G G K
Sbjct: 210 VVKPMKPKASRDKSSETFLVGMGLK 234
>gi|398898715|ref|ZP_10648516.1| 23S rRNA methylase [Pseudomonas sp. GM50]
gi|407366514|ref|ZP_11113046.1| 23S rRNA methyltransferase J [Pseudomonas mandelii JR-1]
gi|398183777|gb|EJM71250.1| 23S rRNA methylase [Pseudomonas sp. GM50]
Length = 209
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 124/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+R DPYV++A+K+ YR R+++KLLE+ K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQRHVNDPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMSVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFTQ ++ +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTQDEVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G E+D L + A KPG + +IK++ G +
Sbjct: 114 QVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAARILKPGGNFVIKVFQGEGFDAYVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V+++KP SSR S E ++L G++G+
Sbjct: 174 DARQKFDKVQMIKPDSSRGSSREQYMLAWGYRGR 207
>gi|387812794|ref|YP_005428271.1| 23S rRNA methyltransferase [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381337801|emb|CCG93848.1| 23 S rRNA methyltransferase [Marinobacter hydrocarbonoclasticus
ATCC 49840]
Length = 213
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 125/213 (58%), Gaps = 9/213 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ SS+ WL+ DP+V++A+++ YR R+++KLLEI++K + ++P V+D G+APG
Sbjct: 8 ARSKSSNRWLEEHVNDPFVKQAQQDGYRSRASYKLLEINNKDRLIKPTDLVVDLGSAPGG 67
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQVA KLV KG V++ D LP+ PI G V + DFT+ ++ D+++ IL
Sbjct: 68 WSQVAAKLVGH--------KGRVVASDILPMDPIAG-VEFIQGDFTEQEVFDQIMAILDG 118
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+ D V+SDMAPN +G+ D L + A KP + K++ G +
Sbjct: 119 ARADAVISDMAPNISGVNAADQAASMYLVELALDMACQVLKPKGSFVAKVFHGEGYDEYV 178
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + +V I KP SSR+ S E++L+ +GF+
Sbjct: 179 KTVRESFDKVVIRKPDSSRARSREVYLVAKGFR 211
>gi|384228369|ref|YP_005620104.1| cell division protein FtsJ [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
gi|345539302|gb|AEO08169.1| cell division protein FtsJ [Buchnera aphidicola str. Ua (Uroleucon
ambrosiae)]
Length = 206
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 123/212 (58%), Gaps = 9/212 (4%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
+ K K SS+ WL+ F+D YV++AKK N R R+ FKL ++D + K + G+ ++D GAA
Sbjct: 2 ISKKKIKSSNYWLREHFSDLYVKEAKKNNIRSRAWFKLEQLDKQNKLFQIGMNIIDLGAA 61
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
PGSWSQ AV + GY +++ D LPI PI G + + DF ++ ++++++
Sbjct: 62 PGSWSQYAVNKIGKTGY--------IIACDILPIKPIIGVNIF-QGDFRNQEMLNKMLSL 112
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
LK+ +V+SDMAPN TG +D I +L+ ++ + L+K + G
Sbjct: 113 LKNITFHLVMSDMAPNITGNFSIDMPRIIELSKLALKISNYVLSKNGTFLLKSFQGEGFN 172
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+L + I ++ +VKI KP +SR+ S E+F++
Sbjct: 173 ELYQEIKTYFKKVKICKPKTSRTRSREIFIIA 204
>gi|406990719|gb|EKE10349.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [uncultured bacterium]
Length = 223
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 120/214 (56%), Gaps = 10/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL R DPYVQ+AK++ YR R+A+KL EID K K L+ G +V+D GA+PG
Sbjct: 19 RGRKISSQRWLTRHLNDPYVQRAKEKGYRSRAAYKLQEIDDKFKILKRGTRVVDLGASPG 78
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVA++ V + G V+ +D PI P+ G + DFT P + L L
Sbjct: 79 GWLQVALERVGAQGK--------VVGIDLTPIEPLPGVHFIC-GDFTDPLVLKTLKEAL- 128
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ ++DVVLSDMA +TG + DH I LA FA + +IK+ G L
Sbjct: 129 NGRVDVVLSDMAAPSTGHSQTDHIRIMALAEEAFLFAQDVLEKDGSFVIKVLRGGTETNL 188
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + +++V KPP+SR SAE++++ GF+
Sbjct: 189 LNLMKKHFAKVTHFKPPASRRDSAEIYVVALGFR 222
>gi|398383744|ref|ZP_10541807.1| 23S rRNA methylase [Sphingobium sp. AP49]
gi|427408984|ref|ZP_18899186.1| ribosomal RNA large subunit methyltransferase E [Sphingobium
yanoikuyae ATCC 51230]
gi|397724189|gb|EJK84664.1| 23S rRNA methylase [Sphingobium sp. AP49]
gi|425713294|gb|EKU76308.1| ribosomal RNA large subunit methyltransferase E [Sphingobium
yanoikuyae ATCC 51230]
Length = 224
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 117/216 (54%), Gaps = 11/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ S WL+R DPYV KAK+E +R R+AFKL+E+D K F++ V+D G APG
Sbjct: 15 KGRTAQSVRWLERHLNDPYVHKAKQEGWRSRAAFKLIELDEKFHFVKGSRAVVDLGVAPG 74
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV K+ PK V+ +D LP+ PI G V L + DF D L L
Sbjct: 75 GWAQVIRKMA---------PKAAVVGIDLLPVDPIPG-VTLFEMDFMDDKAPDLLREALG 124
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ D+V+SDMA N G + DH L A FAV + G + K++ G +L
Sbjct: 125 QEP-DLVISDMAANTVGHAQTDHLRTMGLVEAAADFAVQNLRKGGTFVAKVFAGGTDAEL 183
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + ++ +K KPP+SR S E +++ +GFKG+
Sbjct: 184 LAVLKKHFTTIKHAKPPASRKGSVEWYVVAQGFKGR 219
>gi|418532364|ref|ZP_13098272.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
ATCC 11996]
gi|371450595|gb|EHN63639.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
ATCC 11996]
Length = 220
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 117/205 (57%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A+K+ YR R+A+KL EID +K ++PG V+D G APG+WSQ +
Sbjct: 14 WLHDHINDPYVKAAQKDGYRARAAYKLKEIDESLKLIQPGHTVVDLGCAPGAWSQYVRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G + G ++S+D LP+ PI+G V + DF + + +L + K DVV+S
Sbjct: 74 LSPSGAAVGELNGRIISLDLLPMEPIEG-VHYIQGDFREEAVLAQLEEAMGGGKADVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G D + L + FA+ KP ++K++ G +L + + +
Sbjct: 133 DMAPNLSGHGATDGARVAVLIEMAVDFAINNMKPEGALVVKLFHGSGYNELVDLFKQTFK 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK +KP +SR S+E+FL+G G K
Sbjct: 193 VVKPIKPKASRDRSSEIFLVGMGLK 217
>gi|381200990|ref|ZP_09908121.1| ribosomal RNA large subunit methyltransferase E [Sphingobium
yanoikuyae XLDN2-5]
Length = 214
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 117/216 (54%), Gaps = 11/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ S WL+R DPYV KAK+E +R R+AFKL+E+D K F++ V+D G APG
Sbjct: 5 KGRTAQSVRWLERHLNDPYVHKAKQEGWRSRAAFKLIELDEKFHFVKGSRAVVDLGVAPG 64
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV K+ PK V+ +D LP+ PI G V L + DF D L L
Sbjct: 65 GWAQVIRKMA---------PKAAVVGIDLLPVDPIPG-VTLFEMDFMDDKAPDLLREALG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ D+V+SDMA N G + DH L A FAV + G + K++ G +L
Sbjct: 115 QEP-DLVISDMAANTVGHAQTDHLRTMGLVEAAADFAVQNLRKGGTFVAKVFAGGTDAEL 173
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + ++ +K KPP+SR S E +++ +GFKG+
Sbjct: 174 LAVLKKHFTTIKHAKPPASRKGSVEWYVVAQGFKGR 209
>gi|94496284|ref|ZP_01302862.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas sp. SKA58]
gi|94424463|gb|EAT09486.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingomonas sp. SKA58]
Length = 224
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 116/216 (53%), Gaps = 11/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ S WL+R DPYV+KAK E +R R+AFKL+E+D K F++ V+D G APG
Sbjct: 15 KGRTAQSVRWLERHLNDPYVKKAKAEGWRSRAAFKLIELDEKFHFVKGSRAVVDLGVAPG 74
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV K+ PK V+ +D LP PI G V L + DF D L L
Sbjct: 75 GWAQVVRKMA---------PKAAVVGIDLLPTDPIPG-VTLFEMDFMDDKAPDLLREALG 124
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ D+V+SDMA N G DH L A +FAV + G + K++ G QL
Sbjct: 125 QEP-DLVISDMAANTVGHAPTDHLRTMGLVEAAAQFAVENLRKGGTFVAKVFAGGTDAQL 183
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + ++ +K KPP+SR S E +++ +GFKG+
Sbjct: 184 LAVLKKHFTTIKHAKPPASRKGSVEWYVVAQGFKGR 219
>gi|445423380|ref|ZP_21436618.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter sp.
WC-743]
gi|444755760|gb|ELW80335.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter sp.
WC-743]
Length = 199
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 119/204 (58%), Gaps = 9/204 (4%)
Query: 24 LKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLV 83
++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+A KLV
Sbjct: 1 MREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQIAGKLV 60
Query: 84 NSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD 143
KGLV++ D L + + L + DF + ++ ++L+ IL +DVV+SD
Sbjct: 61 GD--------KGLVIASDILEMDALPDVTFL-QGDFREEEVFEKLLNILNGRTVDVVISD 111
Query: 144 MAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQ 203
MAPN +G R +D L + FA P ++K++ G + + + +
Sbjct: 112 MAPNTSGNRAVDQPRQIYLCELALDFANKVLGPKGQFVVKVFQGSGFDEFRKQVVDSFDV 171
Query: 204 VKILKPPSSRSHSAELFLLGRGFK 227
+K KP +SR+ S E+FL+G+G K
Sbjct: 172 LKTAKPAASRARSKEVFLIGQGRK 195
>gi|319638318|ref|ZP_07993081.1| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
C102]
gi|317400591|gb|EFV81249.1| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
C102]
Length = 206
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 118/209 (56%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KLV G V ++D LP+ IDG V + DF + + ++ +L +
Sbjct: 64 SQVAAKLVGK--------TGAVFALDILPMDAIDG-VSFIQGDFREDAVLEQFEALLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + KPG L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVTDQARSFYLCELALDFASQHLKPGGSFLVKVFQGAGYQEYTA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
+++ ++ V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMSEIFASVQTRKPDASRNRSSEIYLLGK 203
>gi|365538950|ref|ZP_09364125.1| 23S rRNA methyltransferase J [Vibrio ordalii ATCC 33509]
Length = 209
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 120/213 (56%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +AKK YR R+ FK+ EI +K K LRPG+ V+D GAAPG WSQ
Sbjct: 9 SSSRWLKEHFDDKYVNEAKKRGYRSRAIFKIEEIQNKDKLLRPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
+ +V KG V++ D LP+ PI G L + DF + + + L+ ++ D +D
Sbjct: 69 SAGIVGD--------KGRVIACDILPMDPIVGVAFL-QGDFREEAVLEALLDRIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R +T P ++K++ G +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLT---PNGSFVVKVFQGEGFDDYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRNLFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|261378830|ref|ZP_05983403.1| ribosomal RNA large subunit methyltransferase J [Neisseria cinerea
ATCC 14685]
gi|269144809|gb|EEZ71227.1| ribosomal RNA large subunit methyltransferase J [Neisseria cinerea
ATCC 14685]
Length = 206
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 117/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTILADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL P G V ++D LP+ ++G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLAG--------PSGAVFALDILPMEAVNG-VSFIQGDFRENDVLAQFETLLNNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSLYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMRKVFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|83591585|ref|YP_425337.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodospirillum rubrum
ATCC 11170]
gi|386348267|ref|YP_006046515.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodospirillum rubrum
F11]
gi|123527542|sp|Q2RXU5.1|RLME_RHORT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83574499|gb|ABC21050.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodospirillum rubrum
ATCC 11170]
gi|346716703|gb|AEO46718.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodospirillum rubrum
F11]
Length = 263
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 121/215 (56%), Gaps = 6/215 (2%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL+RQ DPYV +AK++ R R+AFKL+E+D + L+PG++V+D GAAPG
Sbjct: 43 KGRKASSTRWLQRQLNDPYVLEAKRQGLRSRAAFKLIELDERFTLLKPGMRVVDLGAAPG 102
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+Q+AV+ S + G V+ +D L + GA L+ DF D ++
Sbjct: 103 GWTQIAVERTRSLHPNG----GKVVGMDILEWEGVAGATCLTH-DFMD-DAAPLMLKGAM 156
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D +D+VLSDMA TG R+ DH + LA A FA PG + K++ G L
Sbjct: 157 DGAVDLVLSDMAAPTTGHRQTDHLRVMGLAEAAWYFAEEVLAPGGAFVCKVFQGGTEGAL 216
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + ++ KPP+SR S E++++ +GF+G
Sbjct: 217 LTRMKKMCEVIRHAKPPASRQGSPEVYVIAQGFRG 251
>gi|420245449|ref|ZP_14749074.1| 23S rRNA methylase [Rhizobium sp. CF080]
gi|398047216|gb|EJL39775.1| 23S rRNA methylase [Rhizobium sp. CF080]
Length = 262
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 125/227 (55%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
TG KL + V KGK SS WL+R DPYVQ+AK E YR R+AFKLLEID K + L+
Sbjct: 11 TGRKLGQRVKKGKLKASSRRWLERHINDPYVQRAKLEGYRARAAFKLLEIDEKHQILKGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ +S D + V ++D L + P+ G VL + DF
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTDSTDDDIR-----VAAIDFLEMAPLAGVKVL-QLDFLDA 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+ RL+ D+V+SDMA TG ++ DH L FAV G L
Sbjct: 125 EAP-RLLLEAIGGTPDLVISDMAAPTTGHQKTDHLRTMHLCEVAAYFAVEVLGEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP +SR S E+FLL + FKG+
Sbjct: 184 KTFQGGTERDLLNMLKQNFKQVIHVKPGASRQESVEMFLLAKHFKGR 230
>gi|288932082|ref|YP_003436142.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ferroglobus placidus DSM
10642]
gi|288894330|gb|ADC65867.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ferroglobus placidus DSM
10642]
Length = 197
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 120/200 (60%), Gaps = 14/200 (7%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D Y KAKKE YR R+A+KL +I++K + ++ G VLD GA+PG WSQVAV+L G D
Sbjct: 6 DYYYWKAKKEGYRSRAAYKLKQINAKFEIIKKGYHVLDLGASPGGWSQVAVEL----GAD 61
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT 149
V++VD P+ PI+G VV K D T+ + ++ + I DK DVVL D +P T
Sbjct: 62 -------VVAVDLNPMKPIEG-VVFIKGDITKEETKEEIRKI--RDKFDVVLCDASPKIT 111
Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
G ++DH L +LA A A + KPG + ++K++ G ++ +++ K+ P
Sbjct: 112 GKWDLDHFLSMELAKAAFDIAKEFLKPGGNFVVKLFQGAELEEVVREFKKYFRFKKLHAP 171
Query: 210 PSSRSHSAELFLLGRGFKGK 229
P+SR SAE++ +G+GF GK
Sbjct: 172 PASRKRSAEIYFIGKGFGGK 191
>gi|254420188|ref|ZP_05033912.1| ribosomal RNA large subunit methyltransferase J [Brevundimonas sp.
BAL3]
gi|196186365|gb|EDX81341.1| ribosomal RNA large subunit methyltransferase J [Brevundimonas sp.
BAL3]
Length = 224
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 119/217 (54%), Gaps = 13/217 (5%)
Query: 6 GPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
G K+K K SS W+KRQ AD + +KA+ E +R R+AFKL+EID K ++ G KV
Sbjct: 16 GTKMKTADT-KSMSSQQWIKRQLADKWSEKARAEGWRSRAAFKLIEIDDKFHLIKRGSKV 74
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
+D GAAPG W QVAV + G V VD L I PI G+ +L + DFT P +
Sbjct: 75 IDLGAAPGGWIQVAV----------NRGAGAVAGVDLLMIEPIPGSTLL-QADFTHPGVD 123
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+L+ + D+VLSDMA N G R+ DH I L FA+ +PG + + K +
Sbjct: 124 QQLIDAIGGAP-DLVLSDMAHNTVGHRQTDHLKIIALIEIAADFAIRTLRPGGNFVSKNF 182
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLL 222
G + + + + VK +KP SSR SAE+FL+
Sbjct: 183 QGGDAGGVLARLREEFETVKYVKPASSRKDSAEVFLV 219
>gi|336125024|ref|YP_004567072.1| 23S rRNA Um2552 2'-O-methyltransferase [Vibrio anguillarum 775]
gi|335342747|gb|AEH34030.1| 23S rRNA Um2552 2'-O-methyltransferase [Vibrio anguillarum 775]
Length = 239
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 120/213 (56%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +AKK YR R+ FK+ EI +K K LRPG+ V+D GAAPG WSQ
Sbjct: 39 SSSRWLKEHFDDKYVNEAKKRGYRSRAIFKIEEIQNKDKLLRPGMTVVDLGAAPGGWSQY 98
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
+ +V KG V++ D LP+ PI G L + DF + + + L+ ++ D +D
Sbjct: 99 SAGIVGD--------KGRVIACDILPMDPIVGVAFL-QGDFREEAVLEALLDRIQPDMVD 149
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R +T P ++K++ G +
Sbjct: 150 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLT---PNGSFVVKVFQGEGFDDYVK 206
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 207 EVRNLFKVVKIRKPDSSRARSREVFVVATGYKG 239
>gi|16125862|ref|NP_420426.1| cell division protein FtsJ [Caulobacter crescentus CB15]
gi|81535426|sp|Q9A7V4.1|RLME_CAUCR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|13423014|gb|AAK23594.1| cell division protein FtsJ [Caulobacter crescentus CB15]
Length = 226
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 118/215 (54%), Gaps = 12/215 (5%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G+ S WL+RQ DP+ KA+ YR R+AFK+ EID K F G KV+D G APG
Sbjct: 24 GRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISEIDDKFHFFSKGAKVIDLGCAPGG 83
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W Q+AV+ G + + +D LP+ P+ A +L + DFT ++L+ +L
Sbjct: 84 WLQIAVE----RGVTT------LAGIDLLPVDPVAPAHLL-EMDFTADGAPEKLLELLGG 132
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+ D+V+SDMAPN G RE DH I L FA+ KPG + K + G ++
Sbjct: 133 EP-DLVMSDMAPNTVGHRETDHLRIVGLIEIAAEFAIDVLKPGGAFVAKAFQGGETAEII 191
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R + +V+ KP +SR S+E+FL+ GFKG+
Sbjct: 192 GKLKRHFDKVQHFKPKASRQDSSEVFLVATGFKGR 226
>gi|71066294|ref|YP_265021.1| 23S rRNA methylase, heat shock protein [Psychrobacter arcticus
273-4]
gi|83305666|sp|Q4FQX1.1|RLME_PSYA2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|71039279|gb|AAZ19587.1| 23S rRNA Um-2552 2'-O-methyltransferase [Psychrobacter arcticus
273-4]
Length = 210
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 120/205 (58%), Gaps = 9/205 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W+K D YVQKA+K+ YR R+A+KLLEI+ K ++ G+ V+D G+APGSWSQV
Sbjct: 13 SSSAWMKEHIDDHYVQKAQKDGYRARAAYKLLEINEKTNLIKKGMTVVDLGSAPGSWSQV 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +LV KG++++ D LP+ + V + DF +P++ D ++ + D ++D
Sbjct: 73 AGQLVGE--------KGILIASDILPMDTLPD-VTFIQGDFREPEVFDHIMAEVGDRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMAPN G +D + L + FA+ G ++K++ G +L + +
Sbjct: 124 VVLSDMAPNTAGNSAIDQPRMMYLCELAVDFALATLPEGGALIMKVFQGEGTQELRKQMQ 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
+S+++ +KP +SR S E+F +
Sbjct: 184 ADFSKIRSIKPGASRPRSKEMFWIA 208
>gi|398992986|ref|ZP_10695945.1| 23S rRNA methylase [Pseudomonas sp. GM21]
gi|398136063|gb|EJM25164.1| 23S rRNA methylase [Pseudomonas sp. GM21]
Length = 208
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLKR DPYV++A+K+ YR R+++KLLE+ K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLGWLKRHVNDPYVKQAQKDGYRSRASYKLLEVQEKYNLIRPGMSVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ ++ R++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDEVLARILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G E+D L + A KPG + +IKI+ G +
Sbjct: 114 QVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAERILKPGGNFVIKIFQGEGFDVYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R + +++++KP SSR S E ++L G++G
Sbjct: 174 DARRKFDKIQMIKPDSSRGSSREQYMLAWGYRG 206
>gi|423710960|ref|ZP_17685280.1| ribosomal RNA large subunit methyltransferase E [Bartonella
washoensis Sb944nv]
gi|395414874|gb|EJF81309.1| ribosomal RNA large subunit methyltransferase E [Bartonella
washoensis Sb944nv]
Length = 242
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 119/211 (56%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + +FL+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKVDGYRSRAAYKLIEINERYQFLKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V S ++P V+ +D L + P+ G V+L + DF D +L+ L K D
Sbjct: 94 AGRIVGS---SDEKPS--VVGIDYLHVDPLPGVVML-EMDFLHADAPQKLIDAL-GTKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L FA++ +P L K + G L +
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTIYLCEVAADFALSVLRPRGHFLAKAFQGGAENTLLNKLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SR S EL+LL FK K
Sbjct: 207 QNFKTVHHVKPPASRMESVELYLLALEFKAK 237
>gi|329893942|ref|ZP_08269977.1| Ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium IMCC3088]
gi|328923397|gb|EGG30714.1| Ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium IMCC3088]
Length = 208
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 119/213 (55%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS WLK D YVQ+A+KE YR R+ +KL+E++ K + LRPG+ V+D G+APG W
Sbjct: 4 KKSSSKAWLKEHRDDVYVQRAQKEGYRSRACYKLIELNEKDRLLRPGMTVVDLGSAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +V KG V++ D LP+ ++ V + DFT+ + D L+ + D+
Sbjct: 64 SQVAAGIVGV--------KGRVIATDILPMDTLED-VDFIQGDFTEEAVFDALLEAIGDE 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +GM +D L + A P + K++ G +L
Sbjct: 115 PVDLVMSDMAPNMSGMTAVDQPRAMYLVELAVDMASRVLAPKGAFVAKVFQGEGFDELFR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
S+ Y V KP +SR S E++++ +GFKG
Sbjct: 175 SLREQYQTVLTRKPDASRPRSREVYIVAKGFKG 207
>gi|221234624|ref|YP_002517060.1| 23S rRNA Um2552 2'-O-methyltransferase [Caulobacter crescentus
NA1000]
gi|220963796|gb|ACL95152.1| 23S rRNA Um2552 2'-O-methyltransferase [Caulobacter crescentus
NA1000]
Length = 236
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 118/215 (54%), Gaps = 12/215 (5%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G+ S WL+RQ DP+ KA+ YR R+AFK+ EID K F G KV+D G APG
Sbjct: 34 GRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISEIDDKFHFFSKGAKVIDLGCAPGG 93
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W Q+AV+ G + + +D LP+ P+ A +L + DFT ++L+ +L
Sbjct: 94 WLQIAVE----RGVTT------LAGIDLLPVDPVAPAHLL-EMDFTADGAPEKLLELLGG 142
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+ D+V+SDMAPN G RE DH I L FA+ KPG + K + G ++
Sbjct: 143 EP-DLVMSDMAPNTVGHRETDHLRIVGLIEIAAEFAIDVLKPGGAFVAKAFQGGETAEII 201
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R + +V+ KP +SR S+E+FL+ GFKG+
Sbjct: 202 GKLKRHFDKVQHFKPKASRQDSSEVFLVATGFKGR 236
>gi|17546244|ref|NP_519646.1| ribosomal RNA large subunit methyltransferase J [Ralstonia
solanacearum GMI1000]
gi|81505141|sp|Q8XZ79.1|RLME_RALSO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|17428541|emb|CAD15227.1| probable ribosomal rna large subunit methyltransferase j (cell
division protein ftsj) [Ralstonia solanacearum GMI1000]
Length = 221
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 121/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 2 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 61
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL S + G ++++D LP+ P+ V + DF + + +L TI+
Sbjct: 62 WSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPV-ADVTFIQGDFREESVFQQLETIVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D K+D+VLSDMAPN +G+ D + +A + FA + KP LIK + G
Sbjct: 121 DATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 181 YSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218
>gi|399067044|ref|ZP_10748724.1| 23S rRNA methylase [Novosphingobium sp. AP12]
gi|398027459|gb|EJL21010.1| 23S rRNA methylase [Novosphingobium sp. AP12]
Length = 225
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 123/224 (54%), Gaps = 12/224 (5%)
Query: 6 GPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
G +L+ K + SS WL RQ DPYV+KAK + YR R+A+KL+E+D K L+ +
Sbjct: 9 GERLRTAKK-RTTSSARWLTRQINDPYVKKAKADGYRSRAAYKLIELDEKFGLLKGVTRA 67
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
+D G APG WSQV ++L K PK V+ +D LP PI+G V + + DF +
Sbjct: 68 VDLGIAPGGWSQV-LRL--------KAPKAKVVGIDLLPTDPIEG-VTIFEMDFMADEAP 117
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L L + D+VLSDMA N G ++ DH L FA+ + PG + K+
Sbjct: 118 AALEEAL-EGAPDLVLSDMAANTVGHKQTDHLRTMGLVETAADFAIQFMAPGGTFVAKVL 176
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
G +L + R ++ VK KPP+SR S+E +++ +GFKG+
Sbjct: 177 AGGTDTELLTLLKRHFTSVKHAKPPASRKDSSEWYVIAKGFKGR 220
>gi|294010578|ref|YP_003544038.1| cell division protein methyltransferase FtsJ [Sphingobium japonicum
UT26S]
gi|292673908|dbj|BAI95426.1| cell division protein methyltransferase FtsJ [Sphingobium japonicum
UT26S]
Length = 215
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 114/216 (52%), Gaps = 11/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ S WL+RQ DPYV++AK E +R R+AFKL+E+D K FL+ V+D G APG
Sbjct: 7 KGRTAQSTRWLERQLNDPYVRRAKAEGWRSRAAFKLIELDEKFHFLKGSRAVVDLGVAPG 66
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV KL PK V+ +D LP PI G V L + DF L L
Sbjct: 67 GWAQVVRKLC---------PKAKVVGIDLLPTDPIPG-VTLFQMDFMDDKAPALLAEALG 116
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D D+V+SDMA N G DH L A FAV + G + K++ G L
Sbjct: 117 DAP-DLVISDMAANTVGHAATDHLRTMGLVEAAAMFAVENLRKGGTFVAKVFAGGTDADL 175
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ +K KPP+SR S E +++ +GFKG+
Sbjct: 176 LAILKRHFTTIKHAKPPASRKGSVEWYVVAQGFKGR 211
>gi|407798397|ref|ZP_11145304.1| ribosomal RNA large subunit methyltransferase J [Oceaniovalibus
guishaninsula JLT2003]
gi|407059358|gb|EKE45287.1| ribosomal RNA large subunit methyltransferase J [Oceaniovalibus
guishaninsula JLT2003]
Length = 244
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 125/214 (58%), Gaps = 2/214 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS LWL+RQ DPYV+KA+ + +R R+AFK+LE+D + +FL PG +V+D G APG
Sbjct: 28 RGRKLSSTLWLQRQLNDPYVKKAQAQGFRGRAAFKILELDDRFRFLVPGARVVDLGCAPG 87
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV+ VN+ G + + +G VL +D + PI GA L DF D D V
Sbjct: 88 GWCQVAVERVNALGLRAGKRQGRVLGIDLQEVEPIAGA-ELHVLDFMS-DGADAQVKDWL 145
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DVV+SDMA ++G ++ DH I L A A G + K+ G L
Sbjct: 146 GGGADVVMSDMAAASSGHKQTDHLRIVALCEAAAALAFDVLDDGGTFVAKVLAGGAEGDL 205
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ + + +++V +KPP+SR+ S+E +++ GF+
Sbjct: 206 QKLLKQRFAKVSNVKPPASRADSSEKYVVATGFR 239
>gi|103488231|ref|YP_617792.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingopyxis alaskensis
RB2256]
gi|123379512|sp|Q1GPG3.1|RLME_SPHAL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|98978308|gb|ABF54459.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sphingopyxis alaskensis
RB2256]
Length = 230
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 114/211 (54%), Gaps = 11/211 (5%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV++A+ E YR R+A+KL+E+D K L+ V+D G APG WSQV
Sbjct: 27 SSTRWLQRQLNDPYVRRAQAEGYRSRAAYKLIELDEKFGLLKKSRAVVDLGIAPGGWSQV 86
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
K P+ V +D LP PI+G +L + DF D L+ L D
Sbjct: 87 VRK---------ANPRARVAGIDLLPCEPIEGVAIL-EMDFMDDAAPDALIAALGGAP-D 135
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N G + DH LA FAV PG + K++ G +L +
Sbjct: 136 LVISDMAANTVGHPQTDHLRTIGLAETAADFAVRNLLPGGAFVAKVFAGGADRELLTLLK 195
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R ++ VK KPP+SR S EL+++ +GFKG+
Sbjct: 196 RHFTTVKHAKPPASRKGSPELYVIAQGFKGR 226
>gi|406998713|gb|EKE16608.1| hypothetical protein ACD_10C00894G0002 [uncultured bacterium]
Length = 208
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 117/210 (55%), Gaps = 18/210 (8%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
W K + DPY++K++ E++R R+A+KL EID K K +RPG K+LD GAAPGSWSQ A++
Sbjct: 5 WFKNRLNDPYLKKSRAEDFRSRAAYKLEEIDEKYKLIRPGSKILDLGAAPGSWSQYAMRK 64
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQD----RLVTILKDDKLD 138
V K ++++D L IYPI+G +L Q DI+D + L KLD
Sbjct: 65 VAG--------KAKIIAIDLLEIYPIEGVTIL------QGDIRDIKNQEQIIKLAAGKLD 110
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
V+LSDMAP+ TG+ D + L + A KPG + K+++G L +
Sbjct: 111 VILSDMAPDTTGVHYADTENSALLVHLALDIAEKLLKPGGSFVAKVFEGAEYQALLQRTK 170
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + K P +S + S ELFL+ + FKG
Sbjct: 171 KMFGFAKSFNPKASLNRSRELFLVAQEFKG 200
>gi|300691218|ref|YP_003752213.1| 23S rRNA methyltransferase [Ralstonia solanacearum PSI07]
gi|299078278|emb|CBJ50926.1| 23S rRNA methyltransferase [Ralstonia solanacearum PSI07]
Length = 221
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 122/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 2 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 61
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL +S + G ++++D LP+ P+ V + DF + + +L I+
Sbjct: 62 WSQYVRNKLADSPRAKDGRIDGAIVAIDILPMEPVSD-VTFIQGDFREEAVYQQLEKIVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D K+D+VLSDMAPN +G+ D + +A + FA+ + KP LIK + G
Sbjct: 121 DTTGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFALAHLKPEGALLIKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 181 YSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218
>gi|326797289|ref|YP_004315109.1| ribosomal RNA large subunit methyltransferase E [Marinomonas
mediterranea MMB-1]
gi|326548053|gb|ADZ93273.1| Ribosomal RNA large subunit methyltransferase E [Marinomonas
mediterranea MMB-1]
Length = 206
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS+ WL DPYV++A+ + YR R+++KLLE++ K K ++PG V+D G+APG W
Sbjct: 3 RSKSSNRWLDEHVNDPYVKQAQVDGYRSRASYKLLELNDKDKLIKPGNLVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+A KLV + KG V++ D LP+ + G V + DFT+ + D ++ +
Sbjct: 63 SQIASKLVGN--------KGKVIASDILPMDSLAG-VEFIQGDFTEQSVFDEIMVAVNGA 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+DVV+SDMAPN +G+ D L + A KP +K++ G +
Sbjct: 114 PVDVVVSDMAPNLSGIASSDQASSIYLVELALDMATQVLKPKGSFAVKVFHGEGYDAFVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + V + KP SSR+ S E++L+G+GFKG
Sbjct: 174 EVRKHFQTVVVRKPDSSRARSREVYLVGKGFKG 206
>gi|296136184|ref|YP_003643426.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomonas intermedia
K12]
gi|295796306|gb|ADG31096.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomonas intermedia
K12]
Length = 216
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 119/212 (56%), Gaps = 5/212 (2%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K+ S WL+ DPYV+ A++E YR R+A+KL EID LRPG V+D G+ PGSW
Sbjct: 6 KNKFSKAWLQDHLNDPYVKMAQREGYRARAAYKLKEIDEAEGLLRPGQIVVDLGSTPGSW 65
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ A + G +G +L++D LP+ P+ L DF + + ++L +L+
Sbjct: 66 SQYARNRLMRGG----AVQGTILALDLLPMEPVPDVRFLL-GDFREEAVVNQLEALLEGR 120
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+DVVLSDMAPN TG+ D I L+ + FA + +P +IK + G Q+ +
Sbjct: 121 KVDVVLSDMAPNLTGIPSADAARIEHLSELALDFAQRWLQPQGAMVIKTFHGSYYSQIVK 180
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + QVK +KP +SR SAE F+L R K
Sbjct: 181 AFKLVFQQVKAVKPRASRDKSAETFILARTLK 212
>gi|157376529|ref|YP_001475129.1| 23S rRNA methyltransferase [Shewanella sediminis HAW-EB3]
gi|189040340|sp|A8FYS8.1|RLME_SHESH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|157318903|gb|ABV38001.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sediminis
HAW-EB3]
Length = 209
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 118/214 (55%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS W++ F D YV+ A+K +R R+AFK+ EI K K +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSSRWMQEHFDDHYVKLAQKRGFRSRAAFKIEEIQEKDKLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVKL +G V++ D LP+ PI G L + DF + + D L+T +
Sbjct: 64 GWSQVAVKLAGDNGK--------VIACDILPMDPIVGVDFL-QGDFREEKVLDALLTRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 DAKVDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFEEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+S+ + VK KP SSR+ S E++L+ G+K
Sbjct: 175 MKSVREAFKTVKTRKPDSSRARSREVYLVATGYK 208
>gi|308050591|ref|YP_003914157.1| 23S rRNA Um2552-methyltransferase [Ferrimonas balearica DSM 9799]
gi|307632781|gb|ADN77083.1| 23S rRNA Um-2552 2'-O-methyltransferase [Ferrimonas balearica DSM
9799]
Length = 209
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 118/210 (56%), Gaps = 9/210 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL F D YV+KA+K+ R R+ FKL EI K + L+PG+KV+D GAAPG WSQ
Sbjct: 9 SSKRWLTEHFDDQYVKKAQKQGLRSRAVFKLEEIQGKDRLLKPGMKVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + V G D G+V++ D LP+ PI G L + DF + + + L+T + D+K+D
Sbjct: 69 ATEQV---GQD-----GMVIACDILPMDPIAGVDFL-QGDFREEAVLNALLTHIGDEKVD 119
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G +D L K ++K++ G Q + +
Sbjct: 120 VVMSDMAPNFSGAGAVDQPRAMYLVELAFDMCHQVLKKNGAFVVKVFQGEGFDQYLQEVR 179
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ VKI KP SSR+ S E++++ G+KG
Sbjct: 180 SVFGNVKIRKPDSSRARSREVYIVASGYKG 209
>gi|153209329|ref|ZP_01947348.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
'MSU Goat Q177']
gi|165924044|ref|ZP_02219876.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
Q321]
gi|212218759|ref|YP_002305546.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
CbuK_Q154]
gi|226703291|sp|B6J802.1|RLME_COXB1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120575400|gb|EAX32024.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
'MSU Goat Q177']
gi|165916503|gb|EDR35107.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
Q321]
gi|212013021|gb|ACJ20401.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
CbuK_Q154]
Length = 212
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 122/213 (57%), Gaps = 13/213 (6%)
Query: 20 SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA 79
S WL+ DPYV++AKKE Y R+A+KLLEI K K +P + V+D GAAPG WSQVA
Sbjct: 4 SKRWLEEHEKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVA 63
Query: 80 VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL-- 137
LV PKG+V+++D LPI + V+ + DF +P+I ++L I+ L
Sbjct: 64 KDLVG--------PKGVVIAIDLLPIQSMLD-VIFIQGDFNEPEIFNQLEAIVAKKTLTG 114
Query: 138 --DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+V+SDMAPN +G++ +D L A G L+K++ G +
Sbjct: 115 QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLI 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ +++QVK LKP +SRS S+E+++L F G
Sbjct: 175 NLRPYFNQVKFLKPSASRSRSSEIYILAGEFLG 207
>gi|85709359|ref|ZP_01040424.1| 23S rRNA methylase [Erythrobacter sp. NAP1]
gi|85688069|gb|EAQ28073.1| 23S rRNA methylase [Erythrobacter sp. NAP1]
Length = 221
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 120/216 (55%), Gaps = 11/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+RQ DPYV++AK + YR R+A+KLLE+D K LR +V+D G APG
Sbjct: 16 KKRTESSTRWLQRQLNDPYVKQAKADGYRSRAAYKLLELDEKFSLLRGTRRVVDLGIAPG 75
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQV +K PK ++ +D LP PI+G V + + DF ++L + L
Sbjct: 76 GWSQVV---------RAKAPKAEIVGIDLLPTEPIEG-VTIFEMDFMDDAAPEKLESALG 125
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMA N G ++ DH L A FAV + G + K+ G +L
Sbjct: 126 GPP-DLVISDMAANTVGHKQTDHLRTMALVEAGAWFAVETLEKGGAFVAKVLAGGTDAEL 184
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + R + VK KPP+SR S+E +++ +GFKG+
Sbjct: 185 LKLLKRHFKTVKHAKPPASRKGSSEWYVVAQGFKGR 220
>gi|387130166|ref|YP_006293056.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Methylophaga sp. JAM7]
gi|386271455|gb|AFJ02369.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Methylophaga sp. JAM7]
Length = 205
Score = 142 bits (359), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 117/210 (55%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS WLK F D YV+KA ++ YR R+ FKL EI+ K K LRPG+ V+D GAAPG W
Sbjct: 3 KSKSSQNWLKEHFDDVYVKKAHQKGYRSRATFKLDEINQKDKLLRPGMVVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
S A+ V G V+++D LP+ P+ G V + DF + + D L ++ D
Sbjct: 63 SDYALHQVGE--------SGTVVALDILPMTPLTG-VHFIEGDFREQTVLDALEEVVADQ 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +G+ +D L + FA + D L+K++ G +
Sbjct: 114 SIDLVLSDMAPNLSGVDAIDQAGSMYLVELALDFAQQHLSKNGDFLVKVFQGEGFEAYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
++ + +V KP +SR+ S E++LLGRG
Sbjct: 174 AMRETFKKVVSRKPDASRARSREIYLLGRG 203
>gi|289662669|ref|ZP_06484250.1| cell division protein FtsJ [Xanthomonas campestris pv. vasculorum
NCPPB 702]
gi|289669632|ref|ZP_06490707.1| cell division protein FtsJ [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 210
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 117/210 (55%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK FADPYV+KA+ E R R+A+KL E+ + + L+PG+ V+D GAAPG W
Sbjct: 4 RSKSSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K + G V+++D L + + G L DF + + + +L D
Sbjct: 64 SQQVRKSMGDSGR--------VVALDILDMPALAGVEFLH-GDFREQAVLSQFEALLGDV 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GM +D + LA + FA T+ KPG LIK++ G
Sbjct: 115 PVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKPGGAFLIKLFQGVGSDDYIR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E++ LG+G
Sbjct: 175 ELRRRYEKVTIRKPAASRKRSPEVYALGQG 204
>gi|399069128|ref|ZP_10749299.1| 23S rRNA methylase [Caulobacter sp. AP07]
gi|398045280|gb|EJL38019.1| 23S rRNA methylase [Caulobacter sp. AP07]
Length = 235
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 120/217 (55%), Gaps = 16/217 (7%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G+ S WL+RQ DP+ KA+ YR R+AFK+ EID K F R G +++D G APG
Sbjct: 33 GRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISEIDDKHHFFRKGARIIDLGCAPGG 92
Query: 75 WSQVAVKLVNSHGYDSKQPKGL--VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL 132
W Q+A + +G+ ++ VD LP+ P+ A +L + DFT P +++ +L
Sbjct: 93 WLQIATE------------RGVTDIVGVDLLPVDPVAPAHIL-EMDFTDPACPPKMLELL 139
Query: 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
D+V+SDMAPN G RE DH I L FA+ KPG + K + G +
Sbjct: 140 GGAP-DLVMSDMAPNTVGHRETDHLRIVGLIEIGAEFAIEVLKPGGAFVAKAFQGGETAE 198
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +++V KP +SRS S+E+FL+ GFKG+
Sbjct: 199 VIAQLKKHFTKVVHFKPKASRSDSSEVFLVATGFKGR 235
>gi|21242480|ref|NP_642062.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
gi|78047320|ref|YP_363495.1| cell division protein FtsJ [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|294626637|ref|ZP_06705234.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|294665640|ref|ZP_06730917.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|325928791|ref|ZP_08189960.1| 23S rRNA Um-2552 2'-O-methyltransferase family [Xanthomonas
perforans 91-118]
gi|346724661|ref|YP_004851330.1| cell division protein FtsJ [Xanthomonas axonopodis pv. citrumelo
F1]
gi|418517986|ref|ZP_13084141.1| cell division protein FtsJ [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|418519797|ref|ZP_13085848.1| cell division protein FtsJ [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|81803099|sp|Q8PLQ8.1|RLME_XANAC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|123585340|sp|Q3BUR8.1|RLME_XANC5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|21107928|gb|AAM36598.1| cell division protein [Xanthomonas axonopodis pv. citri str. 306]
gi|78035750|emb|CAJ23441.1| cell division protein FtsJ [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|292599057|gb|EFF43197.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292604586|gb|EFF47960.1| cell division protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|325540872|gb|EGD12445.1| 23S rRNA Um-2552 2'-O-methyltransferase family [Xanthomonas
perforans 91-118]
gi|346649408|gb|AEO42032.1| cell division protein FtsJ [Xanthomonas axonopodis pv. citrumelo
F1]
gi|410704457|gb|EKQ62939.1| cell division protein FtsJ [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410705347|gb|EKQ63822.1| cell division protein FtsJ [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 210
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 117/210 (55%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK FADPYV+KA+ E R R+A+KL E+ + + L+PG+ V+D GAAPG W
Sbjct: 4 RSKSSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K + G V+++D L + + G L DF + + + +L D
Sbjct: 64 SQQVRKSMGDSGR--------VVALDILDMPALAGVEFLH-GDFREQAVLSQFEAMLGDV 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GM +D + LA + FA T+ KPG LIK++ G
Sbjct: 115 PVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKPGGAFLIKLFQGVGSDDYIR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E++ LG+G
Sbjct: 175 ELRRRYEKVTIRKPAASRKRSPEVYALGQG 204
>gi|148652346|ref|YP_001279439.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychrobacter sp.
PRwf-1]
gi|189040324|sp|A5WCU8.1|RLME_PSYWF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|148571430|gb|ABQ93489.1| 23S rRNA Um-2552 2'-O-methyltransferase [Psychrobacter sp. PRwf-1]
Length = 210
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 122/207 (58%), Gaps = 9/207 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG SS W+K D YVQ A+KE YR R+A+KLLEI+ K ++ G+ V+D G+APG
Sbjct: 8 KGLSKSSKAWMKEHLDDHYVQLAQKEGYRARAAYKLLEINEKTNLIKKGMTVVDLGSAPG 67
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SWSQVA +LV +G++++ D LP+ ++ V + DF + + DRL++ +
Sbjct: 68 SWSQVAGRLVGD--------EGILIASDILPMDALEN-VTFIQGDFREEAVFDRLMSEVG 118
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D ++DVVLSDMAPN +G +D + L + FA+ G ++K++ G QL
Sbjct: 119 DRQVDVVLSDMAPNTSGHTAVDQPRMIYLCELAVDFALRVLPKGGSLVMKVFQGEGEQQL 178
Query: 194 EESITRFYSQVKILKPPSSRSHSAELF 220
+ + +S+V+ +KP +SR S E+F
Sbjct: 179 RQQLQSQFSKVRTIKPAASRPRSKEVF 205
>gi|388258636|ref|ZP_10135811.1| LacI family transcription regulator [Cellvibrio sp. BR]
gi|387937395|gb|EIK43951.1| LacI family transcription regulator [Cellvibrio sp. BR]
Length = 206
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 126/214 (58%), Gaps = 9/214 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ SS+ WL+ DPYV+KA+ + YR R+A+KLLE++ K K +RP + V+D G+APGS
Sbjct: 2 ARSKSSNRWLEEHVNDPYVKKAQVDGYRARAAYKLLELNEKDKLIRPAMMVVDLGSAPGS 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQ+A +LV KG V++ D LP+ ++ V + DFT+ + ++++ L
Sbjct: 62 WSQIAGRLVGV--------KGRVIASDILPMDSLE-HVDFIQGDFTEEVVFNQIMEKLGG 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
++ DVV+SDMAPN +G+ +D L + A + KP D + K++ G
Sbjct: 113 NRADVVISDMAPNISGVDAVDQASSMYLVELALDMARSVLKPKGDFVAKVFHGEGYDDYV 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + +V I KP +SR S E++++G+GFKG
Sbjct: 173 KEVRTSFEKVVIRKPDASRPRSREVYVVGKGFKG 206
>gi|239815604|ref|YP_002944514.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Variovorax paradoxus
S110]
gi|259494572|sp|C5CKU4.1|RLME_VARPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|239802181|gb|ACS19248.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Variovorax paradoxus
S110]
Length = 222
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 1/207 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A +E YR R+A+KL EID + ++PG V+D G+ PG+WSQ +
Sbjct: 14 WLHDHINDPYVKLATREGYRARAAYKLKEIDESLGLVKPGQLVVDLGSTPGAWSQYLRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G + + G ++++D LP+ PI+G L + DF + ++ ++++ +L K D+V+S
Sbjct: 74 MSPEGAAAGELNGTIIALDILPMEPIEGVTFL-QGDFREAELLEQVLGVLAGRKADLVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D + L I FA + KP + K++ G +L + +
Sbjct: 133 DMAPNLSGIHSADAARVAHLIELAIDFAQHHLKPEGALVAKLFHGSGYDELVKLFKANFR 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFKGK 229
VK KP +SR S+E FL+G G K +
Sbjct: 193 TVKPFKPKASRDKSSETFLVGMGLKAQ 219
>gi|237745683|ref|ZP_04576163.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
formigenes HOxBLS]
gi|229377034|gb|EEO27125.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
formigenes HOxBLS]
Length = 215
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 119/206 (57%), Gaps = 5/206 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ-VAVK 81
W++ DP+V+ A+KE YR R+ +KL EID K +RPG ++D G APGSWSQ +A K
Sbjct: 10 WMRNHLDDPFVKLAQKEGYRARAVYKLSEIDENAKLVRPGQVIVDLGCAPGSWSQYIARK 69
Query: 82 LVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVL 141
L G+ G ++ +D LP+ P++G L + DF + + L +L+ ++D+VL
Sbjct: 70 LGGQGGHPV---NGTIVGLDILPMEPVEGVHFL-QGDFREESVLHELEALLEGRQVDLVL 125
Query: 142 SDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY 201
SDMAPN +G+ D + L + FA + KP L+K ++G ++ + +
Sbjct: 126 SDMAPNLSGIASADAARVEYLMDLALEFAQAHLKPSGSLLVKCFNGSTYNEILKKFRETF 185
Query: 202 SQVKILKPPSSRSHSAELFLLGRGFK 227
V +KP +SR++S+E+FLLGR +
Sbjct: 186 VTVTPVKPKASRNYSSEMFLLGRQLR 211
>gi|319406133|emb|CBI79772.1| cell division protein ftsJ [Bartonella sp. AR 15-3]
Length = 240
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 119/211 (56%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K+K + YR RSA+KL+EID + K + G KV+D GAAPG W QV
Sbjct: 32 SSRRWLERHLNDPYVHKSKVDGYRSRSAYKLIEIDERYKIFKKGQKVIDLGAAPGGWCQV 91
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
+ V S ++P V+ +D L + P+ G +VL K DF D +L+ L + + D
Sbjct: 92 VSRKVAS---TDQKPS--VVGIDYLAMDPLPGVIVL-KMDFLCEDAPQKLMNAL-ETQPD 144
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA TG R+ DH L FA++ K G L K + G L ++
Sbjct: 145 IVLSDMAAPTTGHRKTDHLRTMYLCEMAADFALSVLKTGGHFLAKAFQGGAENTLLTTLK 204
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + V +KPP+SR+ S EL+LL FKG+
Sbjct: 205 QNFKIVHHVKPPASRAESVELYLLALEFKGR 235
>gi|296313876|ref|ZP_06863817.1| ribosomal RNA large subunit methyltransferase J [Neisseria
polysaccharea ATCC 43768]
gi|296839605|gb|EFH23543.1| ribosomal RNA large subunit methyltransferase J [Neisseria
polysaccharea ATCC 43768]
Length = 206
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 116/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTILADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL P G V ++D LP+ ++G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLAG--------PSGAVFALDILPMEAVNG-VSFIQGDFRENDVLAQFETLLNNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSLYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMRGIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|77456998|ref|YP_346503.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas fluorescens
Pf0-1]
gi|123606009|sp|Q3KI92.1|RLME_PSEPF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|77381001|gb|ABA72514.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas fluorescens
Pf0-1]
Length = 209
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLKR DPYV++A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLGWLKRHVNDPYVKQAQKDGYRSRASYKLLEIQEKYKLIRPGMNVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G E+D L + A KPG + +IKI+ G +
Sbjct: 114 QVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAERILKPGGNFVIKIFQGEGFDTYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +++++KP SSR S E ++L G++G+
Sbjct: 174 DARKKFDKIQMIKPDSSRGSSREQYMLAWGYRGR 207
>gi|344198778|ref|YP_004783104.1| ribosomal RNA large subunit methyltransferase E [Acidithiobacillus
ferrivorans SS3]
gi|343774222|gb|AEM46778.1| Ribosomal RNA large subunit methyltransferase E [Acidithiobacillus
ferrivorans SS3]
Length = 219
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 121/217 (55%), Gaps = 18/217 (8%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK F DP+VQ+A KE YR R+++KLLEI K +RPG++VLD GAAPG W
Sbjct: 3 RSKSSQKWLKEHFKDPFVQRAMKEGYRSRASYKLLEIQQKDHLIRPGMRVLDVGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+QVA L+ KG +++VD+L + P+ A+V+ C D+ + V D
Sbjct: 63 TQVAAPLIGR--------KGRLVAVDRLAMDPVADAIVI--CG----DVYEDAVLAACRD 108
Query: 136 KL----DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L D+++SDMAPN +G+ +D LA + A + PG LIK++ G
Sbjct: 109 ALPGGADLIMSDMAPNMSGIASVDQARAIDLAELALDMAQRWLVPGGSLLIKVFMGSGAE 168
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L ++ R + ++ + KP +SR+ S E + L F+G
Sbjct: 169 DLRRALRRDFKKIVVRKPEASRARSTEQYWLALDFQG 205
>gi|333375523|ref|ZP_08467331.1| ribosomal RNA large subunit methyltransferase J [Kingella kingae
ATCC 23330]
gi|332970372|gb|EGK09364.1| ribosomal RNA large subunit methyltransferase J [Kingella kingae
ATCC 23330]
Length = 213
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 120/209 (57%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS W+ DPYVQ+A+K+ YR R+A+KLLEI+ K K ++ G + D G+APGSW
Sbjct: 11 RSKSSSAWMHEHVNDPYVQRAQKDGYRARAAYKLLEINEKDKLIKNGTALADLGSAPGSW 70
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+A KLV +G V ++D LP+ +DG V + DF + + + +L +
Sbjct: 71 SQIAAKLVG--------KEGKVFALDILPMDALDG-VDFIQGDFREESVLAQFENLLGNR 121
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G MD L + FA + K G + L+K++ G +
Sbjct: 122 PLDLVICDMAPNMSGNAVMDQARSFYLCELALDFAQNHLKTGGNFLVKVFQGSGYQEYMA 181
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ ++ V+ KP +SR+ S+E++LLG+
Sbjct: 182 AMKTVFATVQTRKPDASRNRSSEIYLLGK 210
>gi|88705677|ref|ZP_01103387.1| Ribosomal RNA large subunit methyltransferase J [Congregibacter
litoralis KT71]
gi|88700190|gb|EAQ97299.1| Ribosomal RNA large subunit methyltransferase J [Congregibacter
litoralis KT71]
Length = 206
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 118/210 (56%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS WL+ DPYVQ+A+++ YR R+ +KLLE+ + +RPG+ VLD G+APG W
Sbjct: 4 KSSSSKAWLREHRDDPYVQQAQRDGYRSRACYKLLELQERDNIIRPGMTVLDLGSAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +LV +G V++ D LP+ PIDG V + DFT+ + ++++ + D
Sbjct: 64 SQVAAELVGK--------RGQVIASDILPMDPIDG-VNFVQGDFTEDQVFEQILAEMGDK 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+V+SDMAPN +G+ +D L + A PG + K++ G +L
Sbjct: 115 SADLVISDMAPNMSGVSAVDQPKSIYLVELALDMATRVLVPGGAFITKVFQGEGFDELFR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ + +V KP +SR S E++L+ RG
Sbjct: 175 ATREQFDKVLTRKPSASRPRSREVYLVARG 204
>gi|433536487|ref|ZP_20492995.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
77221]
gi|432274437|gb|ELL29525.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
77221]
Length = 206
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL P G V ++D LP+ I G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLAG--------PSGAVFALDILPMEAI-GGVSFIQGDFRENDVLAQFETLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSLYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|402827847|ref|ZP_10876810.1| 23S rRNA methyltransferase J [Sphingomonas sp. LH128]
gi|402258619|gb|EJU09019.1| 23S rRNA methyltransferase J [Sphingomonas sp. LH128]
Length = 226
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 123/224 (54%), Gaps = 12/224 (5%)
Query: 6 GPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
G +LK K + SS WL RQ DPYV+KAK + YR R+A+KLLE+D K + + +
Sbjct: 9 GERLKTAKK-RSTSSARWLTRQLNDPYVKKAKADGYRSRAAYKLLELDEKFELFKGVERA 67
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
+D G APG WSQV ++L K+PK ++ +D LP PI+G V + + DF D
Sbjct: 68 VDLGIAPGGWSQV-LRL--------KRPKAKIVGIDLLPTDPIEG-VTIFEMDFMA-DAA 116
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ + D+VLSDMA N G ++ DH L FA+ Y PG L K+
Sbjct: 117 PAALDAALEGAPDLVLSDMAANTVGHKQTDHLRTMGLVETAADFAIQYLAPGGTFLAKVL 176
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
G QL + + ++ VK KPP+SR S+E +++ +GFKG+
Sbjct: 177 AGGTDTQLLALLKKHFTSVKHAKPPASRKDSSEWYVIAKGFKGR 220
>gi|395782636|ref|ZP_10463022.1| ribosomal RNA large subunit methyltransferase E [Bartonella
rattimassiliensis 15908]
gi|395417373|gb|EJF83712.1| ribosomal RNA large subunit methyltransferase E [Bartonella
rattimassiliensis 15908]
Length = 242
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 119/211 (56%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + KFL+ G KV+D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKIDGYRSRAAYKLIEINERYKFLKKGQKVIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
++V S ++P V+ +D L + P+ V + + DF + +L+ L K D
Sbjct: 94 VERIVGS---SDEKPS--VVGIDYLHVDPLP-RVAMLEMDFLHANAPHKLIKTL-GTKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA G R+ DH L F+++ KPG L K + G L +
Sbjct: 147 VVLSDMAAPTIGHRQTDHLRTIYLCEVAADFSLSVLKPGGHFLAKAFQGGAENTLLTILK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V +KPP+SRS S EL+LL FKGK
Sbjct: 207 QHFKKVYHVKPPASRSESVELYLLALEFKGK 237
>gi|390989113|ref|ZP_10259413.1| ribosomal RNA large subunit methyltransferase E [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|372556147|emb|CCF66388.1| ribosomal RNA large subunit methyltransferase E [Xanthomonas
axonopodis pv. punicae str. LMG 859]
Length = 210
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 117/210 (55%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK FADPYV+KA+ E R R+A+KL E+ + + L+PG+ V+D GAAPG W
Sbjct: 4 RSKSSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K + G V+++D L + + G L DF + + + +L D
Sbjct: 64 SQQVHKSMGDSGR--------VVALDILDMPALAGVEFLH-GDFREQAVLSQFEAMLGDV 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GM +D + LA + FA T+ KPG LIK++ G
Sbjct: 115 PVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKPGGAFLIKLFQGVGSDDYIR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E++ LG+G
Sbjct: 175 ELRRRYEKVTIRKPAASRKRSPEVYALGQG 204
>gi|374852419|dbj|BAL55352.1| cell division protein FtsJ [uncultured gamma proteobacterium]
Length = 206
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 117/210 (55%), Gaps = 9/210 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL F D YV+ A+ + YR R+ FKL EI ++ + L PG+ V+D GAAPG WSQ
Sbjct: 6 SSRRWLAEHFDDAYVRLAQAQGYRSRAVFKLQEIQARDRILAPGMTVVDLGAAPGGWSQF 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A D +P G +++VD LP+ P+ G L + DFT+ RL +L++ ++
Sbjct: 66 AA--------DQIKPGGKIVAVDILPMDPLPGVTFL-QGDFTEEQTWQRLKAVLQERPVN 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSD+APN +G R +D LA + A G L K++ G ++ +
Sbjct: 117 VVLSDLAPNLSGNRSVDQARAVHLAELALDTAEQLLVEGGCLLTKLFQGEGFEAFQKRLR 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+++V KP +SRS S E++LL +GF+G
Sbjct: 177 TRFAKVTTRKPKASRSRSREVYLLAQGFRG 206
>gi|409399806|ref|ZP_11250034.1| ribosomal RNA large subunit methyltransferase J [Acidocella sp.
MX-AZ02]
gi|409131089|gb|EKN00811.1| ribosomal RNA large subunit methyltransferase J [Acidocella sp.
MX-AZ02]
Length = 224
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 115/209 (55%), Gaps = 12/209 (5%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV AK +R R+AFKL+E+D K K + G +VLD GAAPG WSQV
Sbjct: 26 SSQRWLQRQLNDPYVTAAKAAGWRSRAAFKLIELDEKYKLIGKGSRVLDLGAAPGGWSQV 85
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A+ ++ V+ +D L I P+ GA + + DF + I+ RL +L K D
Sbjct: 86 AL----------ERGAAKVVGIDLLEIQPVAGADFI-QGDFLEEGIEARLTELL-GGKAD 133
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPN +G DH I LA + FA P + K++ G + ++
Sbjct: 134 LVLSDMAPNTSGHVATDHIRIMALAETALAFACEILAPDGAFVAKLFQGGAEKDMLNTLK 193
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ VK KPP+SR S E++++ GF+
Sbjct: 194 ARFRSVKHAKPPASRKDSKEMYVVATGFR 222
>gi|192359469|ref|YP_001983134.1| ribosomal RNA large subunit J [Cellvibrio japonicus Ueda107]
gi|226703290|sp|B3PLQ4.1|RLME_CELJU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|190685634|gb|ACE83312.1| ribosomal RNA large subunit J [Cellvibrio japonicus Ueda107]
Length = 211
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 126/213 (59%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS+ WL+ F+D YV+K+ + YR R+++KLLE++ K + +RPG+ V+D GAAPG W
Sbjct: 3 RSKSSNRWLEEHFSDQYVKKSHADGYRTRASYKLLELNDKDRLIRPGMLVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA + V +HG V++ D LP+ ++G V + DFT + ++++ + D
Sbjct: 63 SQVAGQQVGTHGR--------VVASDILPMDTLEG-VEFIQGDFTDDSVFNQILLAIGDT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+ +D L + A KP + + K++ G Q +
Sbjct: 114 PVDLVISDMAPNMSGINAVDQPQAMYLVELALDMAKRVLKPQGNFVAKVFHGEGYDQYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V I KP +SRS S E++++G+GF G
Sbjct: 174 DLKGCFEKVVIRKPDASRSRSREVYVVGKGFLG 206
>gi|117926296|ref|YP_866913.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Magnetococcus marinus
MC-1]
gi|143460465|sp|A0LC14.1|RLME_MAGSM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|117610052|gb|ABK45507.1| 23S rRNA Um-2552 2'-O-methyltransferase [Magnetococcus marinus
MC-1]
Length = 214
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 122/217 (56%), Gaps = 16/217 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEI------DSKIKFLRP-GLKVLDCGAA 71
SS WL+ DPYVQ+A++E YR R+A+KL+E+ D K L P G V++ GAA
Sbjct: 7 SSKRWLREHHNDPYVQQARREGYRSRAAYKLMELQEVVKEDGKSLLLIPVGANVVELGAA 66
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
PG W+QVAVKL G V+ +D L + P+ GA +L DF + +L +
Sbjct: 67 PGGWTQVAVKLAGVEGS--------VVGIDLLAMDPVPGAEILV-GDFLDDAMLAQLQGL 117
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L + ++DVVLSDMAPN G++ D LA A +F K G + +K+++G
Sbjct: 118 LHEGRVDVVLSDMAPNMCGVKSADQLRGEALAEAAFQFVEENLKTGGNFAVKLFNGPGFH 177
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + ++ VK++KP SSRS S E +L+G GFKG
Sbjct: 178 DMVKQARAMFTVVKVVKPDSSRSRSPEHYLVGMGFKG 214
>gi|344174448|emb|CCA86242.1| 23S rRNA methyltransferase [Ralstonia syzygii R24]
Length = 221
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 122/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 2 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 61
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL +S + G ++++D LP+ P+ V + DF + + +L I+
Sbjct: 62 WSQYVRNKLADSPRAKDGRIDGAIVAIDILPMEPVSD-VTFIQGDFREEAVFQQLEKIVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D K+D+VLSDMAPN +G+ D + +A + FA+ + KP LIK + G
Sbjct: 121 DTTGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFALAHLKPEGALLIKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 181 YSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218
>gi|389606113|emb|CCA45026.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis alpha522]
Length = 206
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINDKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL P G V ++D LP+ I G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLAG--------PSGAVFALDILPMEAI-GGVSFIQGDFRENDVLAQFETLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSLYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|395005246|ref|ZP_10389138.1| 23S rRNA methylase [Acidovorax sp. CF316]
gi|394316826|gb|EJE53527.1| 23S rRNA methylase [Acidovorax sp. CF316]
Length = 217
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 117/205 (57%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL D YV+ A+KE +R R+A+KL EID ++ ++PG V+D G+ PG+WSQ +
Sbjct: 14 WLNDHVNDTYVKLAQKEGFRARAAYKLKEIDEQLHLIKPGNTVVDLGSTPGAWSQYVRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G + Q G ++++D LP+ PI+G L+ DF + + +L L+ +DVV+S
Sbjct: 74 LSPSGAATGQLNGNIIALDILPMEPIEGVTFLN-GDFREESVLAQLEAALEGRVVDVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D I+ L + FA + KP ++K++ G L + +
Sbjct: 133 DMAPNLSGIESADAARISHLVELAVDFATAHLKPDGALVVKLFHGSGYSDLVTLFKQTFK 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK +KP +SR S+E FL+G G K
Sbjct: 193 VVKPVKPKASRDKSSETFLVGMGLK 217
>gi|161830541|ref|YP_001597195.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
RSA 331]
gi|189040687|sp|A9N8M5.1|RLME_COXBR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|161762408|gb|ABX78050.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
RSA 331]
Length = 212
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 122/213 (57%), Gaps = 13/213 (6%)
Query: 20 SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA 79
S WL+ DPYV++AKKE Y R+A+KLLEI K K +P + V+D GAAPG WSQVA
Sbjct: 4 SKRWLEEHAKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVA 63
Query: 80 VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL-- 137
LV PKG+V+++D LP+ + V+ + DF +P+I ++L I+ L
Sbjct: 64 KDLVG--------PKGVVIAIDLLPMQSMLD-VIFIQGDFNEPEIFNQLEAIVAKKTLTG 114
Query: 138 --DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+V+SDMAPN +G++ +D L A G L+K++ G +
Sbjct: 115 QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLI 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ +++QVK LKP +SRS S+E+++L F G
Sbjct: 175 NLRPYFNQVKFLKPSASRSRSSEIYILAGEFLG 207
>gi|421567246|ref|ZP_16012982.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM3001]
gi|402344257|gb|EJU79398.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM3001]
Length = 206
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL + G V ++D LP+ I G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLTGT--------SGAVFALDILPMEAI-GGVSFIQGDFRENDVLAQFETLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA Y K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQYLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|398875585|ref|ZP_10630755.1| 23S rRNA methylase [Pseudomonas sp. GM67]
gi|398884390|ref|ZP_10639325.1| 23S rRNA methylase [Pseudomonas sp. GM60]
gi|398194548|gb|EJM81617.1| 23S rRNA methylase [Pseudomonas sp. GM60]
gi|398206807|gb|EJM93566.1| 23S rRNA methylase [Pseudomonas sp. GM67]
Length = 209
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLKR DPYV++A+K+ YR R+++KLLE+ K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLGWLKRHVNDPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMSVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDGIP------DVTFIQGDFTEDKVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G E+D L + A KPG + +IK++ G +
Sbjct: 114 QVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAARILKPGGNFVIKVFQGEGFDAYVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V+++KP SSR S E ++L G++G+
Sbjct: 174 DARQKFDKVQMIKPDSSRGSSREQYMLAWGYRGR 207
>gi|386287988|ref|ZP_10065154.1| ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium BDW918]
gi|385278967|gb|EIF42913.1| ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium BDW918]
Length = 207
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 119/215 (55%), Gaps = 12/215 (5%)
Query: 13 PKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAP 72
PKG SS WLK F D YV+ A+++ YR R+ +KLLEI K + ++PG+ V+D G+AP
Sbjct: 4 PKG---SSGAWLKEHFDDQYVKMAQRDGYRSRACYKLLEIQEKDRLIKPGMCVVDLGSAP 60
Query: 73 GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL 132
G WSQVA LV HG VL+ D L + I G V + DFT+ ++ D L+ L
Sbjct: 61 GGWSQVAAMLVGHHGR--------VLASDILEMDSIAG-VEFVRGDFTEQEVIDELMAHL 111
Query: 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
+ K D+V+SDMAPN +GMR++D L + A +PG KI+ G +
Sbjct: 112 GNSKADLVISDMAPNMSGMRDVDQPQSMYLCELALDMAGLVLRPGGSFATKIFQGEGFDE 171
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +S+V KP +SR S E++L+ G +
Sbjct: 172 YMRLLRGRFSKVVTRKPAASRPRSREVYLVATGLR 206
>gi|372267507|ref|ZP_09503555.1| ribosomal RNA large subunit methyltransferase J [Alteromonas sp.
S89]
Length = 206
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G+ SSH WL+ F D YV++++KE YR R+++KL E+ K + ++PG+ V+D GAAPG
Sbjct: 2 GRSKSSHRWLREHFNDHYVKQSQKEGYRSRASYKLQELQEKDRLIKPGMTVVDLGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQVA +LV KG VL+ D LP+ + G V + DFT+ + + L+ L +
Sbjct: 62 WSQVAAELVGH--------KGRVLASDILPMDALAG-VDFVQGDFTEEAVFEELLEKLGE 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
++ D+V+SDMAPN +G+R +D L + A K G + K++ G +L
Sbjct: 113 ERADLVISDMAPNMSGVRAVDQPASMYLVELAVDMARQTLKSGGAFVAKVFQGEGFDELI 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ Y V KP +SR S E++++ RGFKG
Sbjct: 173 RDLRSQYQTVVTRKPGASRPRSREVYVVARGFKG 206
>gi|29654650|ref|NP_820342.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii RSA 493]
gi|154707305|ref|YP_001424788.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii Dugway
5J108-111]
gi|212212272|ref|YP_002303208.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
CbuG_Q212]
gi|81628790|sp|Q83BY4.1|RLME_COXBU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040686|sp|A9KGE6.1|RLME_COXBN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703292|sp|B6IZD5.1|RLME_COXB2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|29541918|gb|AAO90856.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii RSA 493]
gi|154356591|gb|ABS78053.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii Dugway
5J108-111]
gi|212010682|gb|ACJ18063.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
CbuG_Q212]
Length = 212
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 122/213 (57%), Gaps = 13/213 (6%)
Query: 20 SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA 79
S WL+ DPYV++AKKE Y R+A+KLLEI K K +P + V+D GAAPG WSQVA
Sbjct: 4 SKRWLEEHEKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVA 63
Query: 80 VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL-- 137
LV PKG+V+++D LP+ + V+ + DF +P+I ++L I+ L
Sbjct: 64 KDLVG--------PKGVVIAIDLLPMQSMLD-VIFIQGDFNEPEIFNQLEAIVAKKTLTG 114
Query: 138 --DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+V+SDMAPN +G++ +D L A G L+K++ G +
Sbjct: 115 QVDLVISDMAPNISGIKNVDQSRSLHLVELAWDCAQKLLARGGTFLVKVFQGPGVDRFLI 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ +++QVK LKP +SRS S+E+++L F G
Sbjct: 175 NLRPYFNQVKFLKPSASRSRSSEIYILAGEFLG 207
>gi|189040697|sp|B0T8J6.2|RLME_CAUSK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
Length = 226
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 120/217 (55%), Gaps = 16/217 (7%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G+ S WL+RQ DP+ KA+ YR R+AFK+ EID K +F + G KV+D G APG
Sbjct: 24 GRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISEIDDKYRFFKKGAKVIDLGCAPGG 83
Query: 75 WSQVAVKLVNSHGYDSKQPKGL--VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL 132
W Q+A + +G+ ++ VD LP+ P+ A +L + DFT P +++ +L
Sbjct: 84 WLQMATE------------RGVTDIVGVDLLPVDPVAPAHIL-EMDFTDPACPPKMLELL 130
Query: 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
D+V+SDMAPN G RE DH I L FA+ KPG + K + G
Sbjct: 131 GGAP-DLVMSDMAPNTVGHRETDHLRIVGLIEIGADFAIEVLKPGGAFVAKAFQGGETAA 189
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +++V KP +SRS S+E+FL+ GFKG+
Sbjct: 190 VIAQLKKHFTKVVHFKPKASRSDSSEVFLVATGFKGR 226
>gi|414173080|ref|ZP_11427843.1| ribosomal RNA large subunit methyltransferase E [Afipia broomeae
ATCC 49717]
gi|410891732|gb|EKS39528.1| ribosomal RNA large subunit methyltransferase E [Afipia broomeae
ATCC 49717]
Length = 232
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 118/210 (56%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ +R R+A+KL EID K +FL+ G V+D GAAPG WSQ+
Sbjct: 22 SSKLWLERQLNDPYVVQAKRDGFRSRAAYKLREIDDKQRFLKQGQVVVDLGAAPGGWSQI 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + + +G V+++D L + + G V ++ DF ++L ++ D
Sbjct: 82 AAKRVGAM-----EGRGKVIAIDLLEMPELPG-VAFAQMDFLDDRAPEKLRAMIGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG R+ D I L FA PG L K++ L +
Sbjct: 135 VVMSDMAANTTGHRKTDQLRIIGLVENAAAFACEILNPGGTFLAKVFQSGAEADLVAQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R + VK +KP +SR S+E ++L GF+G
Sbjct: 195 RDFKTVKHVKPAASRQDSSERYVLALGFRG 224
>gi|84489178|ref|YP_447410.1| 23S rRNA methylase [Methanosphaera stadtmanae DSM 3091]
gi|121697907|sp|Q2NHD6.1|RLME_METST RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|84372497|gb|ABC56767.1| putative 23S rRNA methylase [Methanosphaera stadtmanae DSM 3091]
Length = 206
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 120/207 (57%), Gaps = 8/207 (3%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
W + + Y + AKK+NYR R+++KL ++D K L+P V+D GAAPG WSQV +
Sbjct: 4 WKAKHDKEHYYKLAKKQNYRSRASYKLKQLDKKYSLLKPDYNVVDLGAAPGGWSQVVAET 63
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDG-AVVLSKCDFTQPDIQDRLVTILKDDKLDVVL 141
+ G KG ++SVD I PID A K DFT + QD ++ ++ D K DVVL
Sbjct: 64 IGEEG------KGQIISVDLEYIKPIDHEAYTGVKGDFTTKETQDIIIELI-DGKADVVL 116
Query: 142 SDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY 201
SD AP TG++++D+ L++AVI K + ++K + G ++ +++ + +
Sbjct: 117 SDAAPKLTGIKDIDNFRAYDLSMAVIEIIDNILKNNGNLIMKAFQGEAYQEIIKNLKKKF 176
Query: 202 SQVKILKPPSSRSHSAELFLLGRGFKG 228
VK KP SSR SAE++++ RGF+G
Sbjct: 177 RNVKTTKPNSSRKRSAEMYVIARGFRG 203
>gi|160900358|ref|YP_001565940.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Delftia acidovorans
SPH-1]
gi|226703294|sp|A9BML0.1|RLME_DELAS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|160365942|gb|ABX37555.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Delftia acidovorans
SPH-1]
Length = 217
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 114/205 (55%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A+K+ YR R+A+KL EID ++K +RPG V+D G+ PG+WSQ +
Sbjct: 14 WLNSHVNDPYVKAAQKDGYRARAAYKLKEIDEQLKLIRPGATVVDLGSTPGAWSQYVRRC 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G G ++S+D LP+ PI+G V DF + + +L L K DVV+S
Sbjct: 74 LSPEGAAVGALNGRIISLDLLPMEPIEG-VQFILGDFREEPVLAQLQEALGGGKADVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G D I L + F++ + KP ++K++ G L + +
Sbjct: 133 DMAPNLSGNGTTDAARIALLVELAVDFSIHHMKPEGALVVKLFHGGAYDDLVALFRQTFK 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK +KP SSR S+E FL+G G K
Sbjct: 193 VVKPIKPKSSRDKSSETFLVGMGLK 217
>gi|163750817|ref|ZP_02158052.1| ribosomal RNA large subunit methyltransferase J [Shewanella
benthica KT99]
gi|161329512|gb|EDQ00506.1| ribosomal RNA large subunit methyltransferase J [Shewanella
benthica KT99]
Length = 209
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 118/214 (55%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F D YV+ A+K R R+AFKL EI K K +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSSRWLQEHFDDHYVKLAQKRGLRSRAAFKLEEIQEKDKLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVKLV +G V++ D L + PI G L + DF + + D L+T +
Sbjct: 64 GWSQVAVKLVGD--------RGKVIACDILAMDPIVGVDFL-QGDFREEKVLDALLTRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 DGKVDVVLSDMAPNMSGSGGIDQPRAMYLVELALDMCHQVMAPNGCFAVKVFQGEGFEEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+S+ + +VK KP SSR+ S E++L+ G+K
Sbjct: 175 MKSVRAAFKKVKTRKPDSSRARSREVYLVATGYK 208
>gi|170727902|ref|YP_001761928.1| 23S rRNA methyltransferase J [Shewanella woodyi ATCC 51908]
gi|226705315|sp|B1KRR8.1|RLME_SHEWM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|169813249|gb|ACA87833.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella woodyi ATCC
51908]
Length = 209
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS W++ F D YV+ A+K +R R+AFK+ EI K K +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSSRWMQEHFDDHYVKLAQKRGFRSRAAFKIEEIQEKDKLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVKL +G V++ D LP+ PI G L + DF + + D L+T +
Sbjct: 64 GWSQVAVKLAGDNGK--------VIACDILPMDPIVGVDFL-QGDFREEKVLDALLTRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 DAKVDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFEEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+S+ + VK KP SSR S E++L+ G+K
Sbjct: 175 MKSVREAFKTVKTRKPDSSRPRSREVYLVATGYK 208
>gi|261313253|ref|ZP_05952450.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis M163/99/10]
gi|261302279|gb|EEY05776.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis M163/99/10]
Length = 232
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 117/202 (57%), Gaps = 7/202 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + P+ V+ +D L + P+ G V+L + DF + +L+ L DK D
Sbjct: 98 AARIV---GSTDENPQ--VVGIDYLHVDPLPG-VILLEMDFLDDEAPQKLMDAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FAV+ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELF 220
+ + V +KPP+SR+ S EL+
Sbjct: 211 QKFRSVHHVKPPASRAESVELY 232
>gi|384419697|ref|YP_005629057.1| ribosomal RNA large subunit methyltransferase J [Xanthomonas oryzae
pv. oryzicola BLS256]
gi|353462610|gb|AEQ96889.1| ribosomal RNA large subunit methyltransferase J [Xanthomonas oryzae
pv. oryzicola BLS256]
Length = 210
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 117/210 (55%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK FADPYV+KA+ E R R+A+KL E+ + + L+PG+ V+D GAAPG W
Sbjct: 4 RSKSSQRWLKEHFADPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K S +G V+++D L + + G L DF + + + +L D
Sbjct: 64 SQQVRK--------SMGDRGRVVALDILDMPALAGVEFLH-GDFREQAVLSQFEAMLGDV 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GM +D + LA + FA + KPG LIK++ G
Sbjct: 115 PVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E++ LG+G
Sbjct: 175 ELRRRYEKVTIRKPAASRKRSPEVYALGQG 204
>gi|167646174|ref|YP_001683837.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Caulobacter sp. K31]
gi|167348604|gb|ABZ71339.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Caulobacter sp. K31]
Length = 235
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 120/217 (55%), Gaps = 16/217 (7%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G+ S WL+RQ DP+ KA+ YR R+AFK+ EID K +F + G KV+D G APG
Sbjct: 33 GRTPSQQAWLERQINDPFSAKARALGYRSRAAFKISEIDDKYRFFKKGAKVIDLGCAPGG 92
Query: 75 WSQVAVKLVNSHGYDSKQPKGL--VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTIL 132
W Q+A + +G+ ++ VD LP+ P+ A +L + DFT P +++ +L
Sbjct: 93 WLQMATE------------RGVTDIVGVDLLPVDPVAPAHIL-EMDFTDPACPPKMLELL 139
Query: 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
D+V+SDMAPN G RE DH I L FA+ KPG + K + G
Sbjct: 140 GGAP-DLVMSDMAPNTVGHRETDHLRIVGLIEIGADFAIEVLKPGGAFVAKAFQGGETAA 198
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +++V KP +SRS S+E+FL+ GFKG+
Sbjct: 199 VIAQLKKHFTKVVHFKPKASRSDSSEVFLVATGFKGR 235
>gi|398976137|ref|ZP_10686099.1| 23S rRNA methylase [Pseudomonas sp. GM25]
gi|398139689|gb|EJM28684.1| 23S rRNA methylase [Pseudomonas sp. GM25]
Length = 209
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLKR DPYV++A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLGWLKRHVNDPYVKQAQKDGYRSRASYKLLEIQEKYKLIRPGMNVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G E+D L + A KPG + +IKI+ G +
Sbjct: 114 QVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAERILKPGGNFVIKIFQGEGFDVYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +++++KP SSR S E ++L G++G+
Sbjct: 174 DARKKFDKIQMIKPDSSRGSSREQYMLAWGYRGR 207
>gi|149909287|ref|ZP_01897943.1| ribosomal RNA large subunit methyltransferase J [Moritella sp.
PE36]
gi|149807604|gb|EDM67552.1| ribosomal RNA large subunit methyltransferase J [Moritella sp.
PE36]
Length = 214
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 121/230 (52%), Gaps = 22/230 (9%)
Query: 4 TTGPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGL 63
T PK K KG SS WL D YV+ AKK+ R R+ FKL EI +K K L+PG+
Sbjct: 2 TPTPKKKSTQKG---SSKNWLLEHHNDKYVKDAKKQGLRSRATFKLEEIQAKDKLLQPGM 58
Query: 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPD 123
++D GAAPG WSQ AVK + KG V++ D LP+ PI G DF Q D
Sbjct: 59 NIVDLGAAPGGWSQFAVKHLGD--------KGRVIACDILPMDPIAG------VDFLQGD 104
Query: 124 IQDR-----LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA 178
+D L+ + D K+DVV+SDMAPN +G +D L + KP
Sbjct: 105 FRDEKVLSALLAKVGDGKIDVVVSDMAPNMSGNIGVDQPASMYLVELALEMCREVLKPNG 164
Query: 179 DCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++K++ G Q + + ++ VK KP SSR+ S E+F++ +G+KG
Sbjct: 165 SFVVKVFQGEGFEQYMKDVRSMFNVVKTRKPDSSRARSREVFIVAKGYKG 214
>gi|335044221|ref|ZP_08537246.1| 23S rRNA methylase [Methylophaga aminisulfidivorans MP]
gi|333787467|gb|EGL53351.1| 23S rRNA methylase [Methylophaga aminisulfidivorans MP]
Length = 205
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 118/212 (55%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK F D YV++A+KE +R R+ FKL EID K K +RPG+ V+D G+APG W
Sbjct: 3 RSKSSQSWLKEHFDDQYVKQAQKEGHRSRATFKLKEIDDKDKLIRPGMSVVDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
S A+ V G V+++D L + P+ G V + DF + D+ D L +L
Sbjct: 63 SDYALAKVGDSGK--------VIALDILEMTPLTG-VHFIQGDFREDDVLDELNKVLDGR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+VLSDMAPN TG+ +D L + FA+ L+K++ G +
Sbjct: 114 QIDLVLSDMAPNMTGVGSIDQPSSMYLVELALDFALNNLSKSGCFLVKVFQGEGFEAFLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +++V KP +SR+ S E++LLGRG K
Sbjct: 174 EMRDNFTKVVTRKPGASRARSREVYLLGRGLK 205
>gi|198284444|ref|YP_002220765.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665397|ref|YP_002427111.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|415963264|ref|ZP_11557867.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
sp. GGI-221]
gi|226703276|sp|B7J8G6.1|RLME_ACIF2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703277|sp|B5ENR5.1|RLME_ACIF5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|198248965|gb|ACH84558.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218517610|gb|ACK78196.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|339832886|gb|EGQ60768.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
sp. GGI-221]
Length = 219
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 121/217 (55%), Gaps = 18/217 (8%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK F DP+VQ+A KE YR R+++KLLEI K +RPG++VLD GAAPG W
Sbjct: 3 RSKSSEKWLKEHFKDPFVQRAMKEGYRSRASYKLLEIQQKDHLIRPGMRVLDVGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+QVA L+ KG +++VD+L + P+ A V+ C D+ D + +
Sbjct: 63 TQVAAPLIGR--------KGRLVAVDRLAMDPVADATVI--CG----DVYDDAILAACQE 108
Query: 136 KL----DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L D+++SDMAPN +G+ +D LA + A + PG LIK++ G
Sbjct: 109 ALPGGADLIMSDMAPNMSGIASVDQARAIDLAELALDMAHRWLVPGGALLIKVFMGSGAE 168
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+L ++ R + ++ + KP +SR+ S E + L F+G
Sbjct: 169 ELRRALRRDFKKIVVRKPEASRARSTEQYWLALDFQG 205
>gi|221201968|ref|ZP_03575004.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
multivorans CGD2M]
gi|221204902|ref|ZP_03577919.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
multivorans CGD2]
gi|221213879|ref|ZP_03586852.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
multivorans CGD1]
gi|421470812|ref|ZP_15919162.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
multivorans ATCC BAA-247]
gi|221166056|gb|EED98529.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
multivorans CGD1]
gi|221175759|gb|EEE08189.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
multivorans CGD2]
gi|221178051|gb|EEE10462.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
multivorans CGD2M]
gi|400226881|gb|EJO56918.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
multivorans ATCC BAA-247]
Length = 220
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ PI V + DF + ++ RL
Sbjct: 62 WSQYARNKLAQGKKRDTVREGGIDGTIVALDMLPMEPI-ADVHFIQGDFREDEVLHRLEA 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 121 VLEGRTVDLVISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRHLK 217
>gi|196000356|ref|XP_002110046.1| hypothetical protein TRIADDRAFT_53586 [Trichoplax adhaerens]
gi|190588170|gb|EDV28212.1| hypothetical protein TRIADDRAFT_53586 [Trichoplax adhaerens]
Length = 266
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 8/211 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV+KA + YR RSAFKLLE+D K K + G V+D GA+PG
Sbjct: 40 RGRKSSSSRWLRRQRDDPYVKKAMELGYRSRSAFKLLEMDKKFKIFKKGDIVIDIGASPG 99
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVA+ D +GLV++VD + + A++ DF P + +L
Sbjct: 100 SWTQVAL--------DKTGKRGLVMAVDIRGMKSVGEAMIFDHMDFGVPSTHTFIQNMLV 151
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ K DV++SDM+PN G + DH I A+ ++F + K++ G +
Sbjct: 152 NSKADVIMSDMSPNVAGSPKFDHQAIMTQALCALKFTFANLVYNGTFICKMFHGSDEGLF 211
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + + Y ++ KP +SRS S E + + R
Sbjct: 212 KDMLKQNYHRINEFKPAASRSESNEFYYICR 242
>gi|134295359|ref|YP_001119094.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia
vietnamiensis G4]
gi|387901932|ref|YP_006332271.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. KJ006]
gi|189040696|sp|A4JDA6.1|RLME_BURVG RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|134138516|gb|ABO54259.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia vietnamiensis
G4]
gi|387576824|gb|AFJ85540.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. KJ006]
Length = 220
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 122/217 (56%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+++ G+ ++++D LP+ PI V + DF + D+ +L
Sbjct: 62 WSQYARNKLAQGKQRDAQREGGIDGTIIALDLLPMEPI-ADVHFLQGDFREDDVLHQLEG 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 121 VLEGRPVDLVISDMAPNLSGVASADAARIEHICDLALEFAQNHLKPEGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRQLK 217
>gi|343494411|ref|ZP_08732673.1| 23S rRNA methyltransferase J [Vibrio nigripulchritudo ATCC 27043]
gi|342825316|gb|EGU59815.1| 23S rRNA methyltransferase J [Vibrio nigripulchritudo ATCC 27043]
Length = 209
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +AKK+ YR R+ FK+ EI K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQEKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V G V++ D LP+ I G L + DF + + + L+ ++ D +D
Sbjct: 69 AAKFVGEEGQ--------VIACDILPMDSIAGVAFL-QGDFREDAVLEALLERIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G + +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNMAGNQSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E++++ G+KG
Sbjct: 177 DVRDMFKTVKIRKPDSSRARSREVYIVATGYKG 209
>gi|344170772|emb|CCA83204.1| 23S rRNA methyltransferase [blood disease bacterium R229]
Length = 221
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 121/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 2 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 61
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL +S + G ++++D LP+ P+ V + DF + + +L I+
Sbjct: 62 WSQYVRNKLADSPRAKDGRIDGAIVAIDILPMEPVSD-VTFIQGDFREEAVYQQLEKIVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D K+D+VLSDMAPN +G+ D + +A + FA + KP LIK + G
Sbjct: 121 DTTGGGKVDLVLSDMAPNLSGVAAADAARMEHIAELAVEFARAHLKPEGALLIKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 181 YSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218
>gi|170697951|ref|ZP_02889034.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
IOP40-10]
gi|170137117|gb|EDT05362.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
IOP40-10]
Length = 220
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GA PGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGS 61
Query: 75 WSQVAV-KLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+++ G+ ++++D LP+ PI V + DF + D+ +L
Sbjct: 62 WSQYARNKLAQGKKRDTQREGGIDGTIIALDLLPMEPI-ADVHFIQGDFREDDVLRQLEE 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 VLEGRAVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRQLK 217
>gi|107022371|ref|YP_620698.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
AU 1054]
gi|116689318|ref|YP_834941.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
HI2424]
gi|170732617|ref|YP_001764564.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
MC0-3]
gi|206559643|ref|YP_002230404.1| putative ribosomal RNA large subunit methyltransferase
[Burkholderia cenocepacia J2315]
gi|254245761|ref|ZP_04939082.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
PC184]
gi|444364422|ref|ZP_21164747.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
cenocepacia BC7]
gi|444369433|ref|ZP_21169185.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
cenocepacia K56-2Valvano]
gi|123371703|sp|Q1BXD0.1|RLME_BURCA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|143459622|sp|A0K6C1.1|RLME_BURCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703285|sp|B1JZE9.1|RLME_BURCC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703286|sp|B4E5F3.1|RLME_BURCJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|105892560|gb|ABF75725.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia cenocepacia
AU 1054]
gi|116647407|gb|ABK08048.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia cenocepacia
HI2424]
gi|124870537|gb|EAY62253.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
PC184]
gi|169815859|gb|ACA90442.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
MC0-3]
gi|198035681|emb|CAR51568.1| putative ribosomal RNA large subunit methyltransferase
[Burkholderia cenocepacia J2315]
gi|443593055|gb|ELT61817.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
cenocepacia BC7]
gi|443599079|gb|ELT67387.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
cenocepacia K56-2Valvano]
Length = 220
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GA PGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+++ G+ ++++D LP+ PI V + DF + D+ +L
Sbjct: 62 WSQYARNKLAQGKKRDAEREGGIDGTIVALDILPMEPI-ADVHFLQGDFREDDVLHQLEE 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 VLEGRAVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRQLK 217
>gi|121634592|ref|YP_974837.1| cell division protein [Neisseria meningitidis FAM18]
gi|433494379|ref|ZP_20451449.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM762]
gi|158513144|sp|A1KT57.1|RLME_NEIMF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120866298|emb|CAM10039.1| putative cell division protein [Neisseria meningitidis FAM18]
gi|432231053|gb|ELK86723.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM762]
Length = 206
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL + G V ++D LP+ I G V + DF + D+ + +L +
Sbjct: 64 SQVAAKLTGT--------SGAVFALDILPMEAI-GGVSFIQGDFRENDVLAQFEGLLNNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ F+ V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREFFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|300113259|ref|YP_003759834.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus watsonii
C-113]
gi|299539196|gb|ADJ27513.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus watsonii
C-113]
Length = 212
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 118/213 (55%), Gaps = 10/213 (4%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
+ K K HS+ WL+ F D YV +AK + YR R+ FKL +ID++ + L PG ++D GAA
Sbjct: 1 MAKRKSHSAR-WLREHFRDSYVTQAKAQGYRSRAVFKLQQIDARERLLCPGSVIVDLGAA 59
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
PG WSQ A V +G V+++D LP+ P G V + DF + +I L
Sbjct: 60 PGGWSQWAADRVGE--------RGQVIALDILPMLPYPG-VRFIQGDFREDNILVELQNT 110
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L D +D+V+SDMAPN +GM +D + L + FA P L+K + G
Sbjct: 111 LTDCAVDLVMSDMAPNMSGMAAVDQPRVIYLGELALAFAQESLGPEGSFLLKTFQGEGFD 170
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGR 224
L E I + +SQV+I KPP+SR S E++++ R
Sbjct: 171 TLYEVIRQDFSQVRIHKPPASRGRSREVYIVAR 203
>gi|261400135|ref|ZP_05986260.1| ribosomal RNA large subunit methyltransferase J [Neisseria
lactamica ATCC 23970]
gi|269210130|gb|EEZ76585.1| ribosomal RNA large subunit methyltransferase J [Neisseria
lactamica ATCC 23970]
Length = 206
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL + G V ++D LP+ PI G V + DF + D+ + +L +
Sbjct: 64 SQVAAKLTGT--------SGAVFALDILPMEPI-GGVSFIQGDFRENDVLAQFEGLLNNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|319944197|ref|ZP_08018473.1| ribosomal RNA large subunit methyltransferase J [Lautropia
mirabilis ATCC 51599]
gi|319742492|gb|EFV94903.1| ribosomal RNA large subunit methyltransferase J [Lautropia
mirabilis ATCC 51599]
Length = 239
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 122/219 (55%), Gaps = 15/219 (6%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A++ +YR R+AFKL+ ID + +RPG+ V+D G+APGSWSQV +
Sbjct: 13 WLHDHLNDPYVKLAQRHHYRARAAFKLIGIDEQDHLIRPGMTVVDLGSAPGSWSQVVRRR 72
Query: 83 VNS-------------HGYDSKQP-KGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRL 128
+ + G + P +G ++++D LP+ PI L + DF + D+ DRL
Sbjct: 73 LAAPNLAEDVRKADDLRGEAPQVPIQGRIVALDLLPMEPIPDVNYL-QGDFREQDVLDRL 131
Query: 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188
+L K+D+VLSDMAPN +G+ D + LA + FA + KP LIK++ G
Sbjct: 132 EALLDGGKVDLVLSDMAPNLSGVGVADTARMQDLAELSVDFASRWLKPDGALLIKVFHGS 191
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
QL ++ V+ KP +SR SAE +LLGR K
Sbjct: 192 GYSQLVRLFKDHFAVVQPRKPKASRDRSAETYLLGRRLK 230
>gi|172060240|ref|YP_001807892.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
MC40-6]
gi|226703284|sp|B1YMW2.1|RLME_BURA4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|171992757|gb|ACB63676.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
MC40-6]
Length = 220
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GA PGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGS 61
Query: 75 WSQVAV-KLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+++ G+ ++++D LP+ PI V + DF + D+ +L
Sbjct: 62 WSQYARNKLAQGKKRDTQREGGIDGTIIALDLLPMEPI-ADVHFIQGDFREDDVLRQLED 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 VLEGRAVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRQLK 217
>gi|226705314|sp|B8CKG5.1|RLME_SHEPW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|212555550|gb|ACJ28004.1| Ribosomal RNA large subunit methyltransferase J [Shewanella
piezotolerans WP3]
Length = 209
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS W++ F D YV+ A+K +R R+AFK+ EI K K +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSSRWMQEHFDDHYVKLAQKRGFRSRAAFKIEEIQEKDKLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVKL KG V++ D LP+ PI G L + DF + + D L+T +
Sbjct: 64 GWSQVAVKLAGD--------KGKVIACDILPMDPIVGVDFL-QGDFREEKVLDALLTRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 DAKVDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFDEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + VK KP SSR S E++L+ G+K
Sbjct: 175 MKAVKEAFKTVKTRKPDSSRPRSREVYLVATGYK 208
>gi|338707794|ref|YP_004661995.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294598|gb|AEI37705.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 225
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 110/210 (52%), Gaps = 11/210 (5%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
+S WL+RQ DPYVQKA+ E YR R+A+KLLE+D + L+ +++D G APG WSQV
Sbjct: 18 ASTRWLERQLNDPYVQKAQSEGYRSRAAYKLLELDERFSLLKGAKRIIDLGIAPGGWSQV 77
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K K P+ ++ +D L PI+G V + + DFT P Q L+ L D
Sbjct: 78 ARK---------KAPQAKIVGIDLLEAAPIEG-VTIFQNDFTDPVAQQHLIEAL-GGAAD 126
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA N G DH L FA G + K+ G L +
Sbjct: 127 LVLSDMAANTIGHARTDHLRTMALVEEAAIFASETLHEGGSFVAKVLAGGADNDLVALLK 186
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R + VK KPP+SR S+E +++ + FKG
Sbjct: 187 RLFGHVKHAKPPASRRESSEWYVIAQNFKG 216
>gi|381401050|ref|ZP_09925968.1| cell division protein [Kingella kingae PYKK081]
gi|380833975|gb|EIC13825.1| cell division protein [Kingella kingae PYKK081]
Length = 206
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 119/209 (56%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS W+ DPYVQ+A+K+ YR R+A+KLLEI+ K K ++ G + D G+APGSW
Sbjct: 4 RSKSSPAWMHEHVNDPYVQRAQKDGYRARAAYKLLEINEKDKLIKNGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+A KLV G V ++D LP+ +DG V + DF + + + +L +
Sbjct: 64 SQIAAKLVGKEGK--------VFALDILPMDALDG-VDFIQGDFREESVLAQFENLLGNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G MD L + FA + K G + L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGSAVMDQARSFYLCELALDFAQNHLKTGGNFLVKVFQGSGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ ++ V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMKTVFATVQTRKPDASRNRSSEIYLLGK 203
>gi|374335269|ref|YP_005091956.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Oceanimonas sp. GK1]
gi|372984956|gb|AEY01206.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Oceanimonas sp. GK1]
Length = 209
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 123/217 (56%), Gaps = 15/217 (6%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F D YVQ+A+K+ R R+ FKL E+ + K LRPG+ V+D GAAPG
Sbjct: 4 KKRSASSTRWLKEHFDDKYVQQAQKKGLRSRAVFKLEELQGRDKLLRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ A + V G V++ D LP+ PI G L + DF + + + L+ +
Sbjct: 64 GWSQYATEQVGQGGK--------VIACDILPMDPIAGVDFL-QGDFREEAVLNALLERVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
DDK+DV+LSDMAPN +G E+D + +LA+ + R + P ++K++ G
Sbjct: 115 DDKVDVLLSDMAPNMSGTPEVDQPRAMYLVELALDMCRQVLA---PRGSFVVKVFQGAGF 171
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + R ++ VK+ KP SSR S E++++ GFK
Sbjct: 172 DEFLGEVRRSFATVKVRKPDSSRPRSREVYIVATGFK 208
>gi|398938775|ref|ZP_10668077.1| 23S rRNA methylase [Pseudomonas sp. GM41(2012)]
gi|398165247|gb|EJM53367.1| 23S rRNA methylase [Pseudomonas sp. GM41(2012)]
Length = 209
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL+R DPYV++A+K+ YR R+++KLLE+ K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLKWLQRHVNDPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMSVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFTQ ++ +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTQDEVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G E+D L + A KPG + +IK++ G +
Sbjct: 114 QVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAARILKPGGNFVIKVFQGEGFDAYVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V+++KP SSR S E ++L G +G+
Sbjct: 174 DARQKFDKVQMIKPDSSRGSSREQYMLAWGCRGR 207
>gi|393720036|ref|ZP_10339963.1| 23S rRNA methyltransferase J [Sphingomonas echinoides ATCC 14820]
Length = 230
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 120/214 (56%), Gaps = 11/214 (5%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ S WL+RQ DPYV++AK + +R R+A+KL E+D + FL+ +V+D G APG W
Sbjct: 18 RTAQSTRWLERQLNDPYVKRAKADGFRSRAAYKLSELDERFAFLKGKRRVVDLGIAPGGW 77
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +LV PK ++ +D LP+ PI+G V + + DF +RL+ L D
Sbjct: 78 SQVVRRLV---------PKAAIVGIDLLPVDPIEG-VTIFQLDFMADVAPERLMAAL-DG 126
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+VLSDMA N G + D L A + FA+ +PG + K++ G L
Sbjct: 127 APDLVLSDMAANTVGHPQTDALRTMGLVEAALAFAIDVLEPGGAFVGKVFAGGADTALVA 186
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ VK KP +SR S+E +++ +GFKG+
Sbjct: 187 EMKRNFASVKHAKPAASRKASSEWYVVAQGFKGR 220
>gi|84624459|ref|YP_451831.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188575911|ref|YP_001912840.1| ribosomal RNA large subunit methyltransferase J [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|83305670|sp|Q5GYL7.2|RLME_XANOR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|123521583|sp|Q2P1M0.1|RLME_XANOM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705322|sp|B2SUB8.1|RLME_XANOP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|84368399|dbj|BAE69557.1| cell division protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188520363|gb|ACD58308.1| ribosomal RNA large subunit methyltransferase J [Xanthomonas oryzae
pv. oryzae PXO99A]
Length = 210
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 116/210 (55%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK FADPYV+KA+ E R R+A+KL E+ + + L+PG+ V+D GAAPG W
Sbjct: 4 RSKSSQRWLKEHFADPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K + G V+++D L + + G L DF + + + +L D
Sbjct: 64 SQQVRKSMGDSGR--------VVALDILDMPALAGVEFLH-GDFREQAVLSQFEAMLGDV 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GM +D + LA + FA + KPG LIK++ G
Sbjct: 115 PVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E++ LG+G
Sbjct: 175 ELRRRYEKVTIRKPAASRKRSPEVYALGQG 204
>gi|115351226|ref|YP_773065.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
AMMD]
gi|122323529|sp|Q0BGJ2.1|RLME_BURCM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|115281214|gb|ABI86731.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia ambifaria
AMMD]
Length = 220
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GA PGS
Sbjct: 2 AKNRFNQNWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+++ G+ ++++D LP+ PI V + DF + D+ +L
Sbjct: 62 WSQYARNKLAQGKKRDTQREGGIDGTIIALDLLPMEPI-ADVHFIQGDFREDDVLRQLED 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 VLEGRAVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRQLK 217
>gi|456063117|ref|YP_007502087.1| ribosomal RNA methyltransferase RrmJ/FtsJ [beta proteobacterium CB]
gi|455440414|gb|AGG33352.1| ribosomal RNA methyltransferase RrmJ/FtsJ [beta proteobacterium CB]
Length = 224
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 9/221 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL+ DPYV+ A+KE YR R+ +KL EID + + ++ G+ ++D G+APGS
Sbjct: 2 AKNKFNKSWLQDHLNDPYVKMAQKEGYRARAVYKLSEIDEQDRLIKAGMTIVDLGSAPGS 61
Query: 75 WSQVAVKLV-----NSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV 129
WSQ A + N+ +S +P G ++++D LP+ I V + DF + + L
Sbjct: 62 WSQYARNRLTELGKNNPNIESGKPDGTIIAIDILPMEDI-ADVSFIQGDFREDEGLKALE 120
Query: 130 TILKDD---KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186
+L D K+D+V+SDMAPN +G+ D + LA + F+V + KP LIK ++
Sbjct: 121 ALLPADAGGKVDLVMSDMAPNLSGVGVADAARMAFLAEIALDFSVQHLKPEGALLIKCFN 180
Query: 187 GRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G Q+ ES + + V KP +SR+ S+E+FLLGR K
Sbjct: 181 GSGYSQIVESFKKVFKTVASRKPKASRAKSSEIFLLGRDLK 221
>gi|332530812|ref|ZP_08406738.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hylemonella gracilis
ATCC 19624]
gi|332039724|gb|EGI76124.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hylemonella gracilis
ATCC 19624]
Length = 219
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 115/205 (56%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A+KE YR R+A+KL EID ++ ++PG ++D G APG+WSQ +
Sbjct: 14 WLNDHVNDPYVKLAQKEGYRARAAYKLKEIDETLRLVKPGQVIVDLGCAPGAWSQYLRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
+ G + G V+ +D LP+ PI+G V + DF + + +L +L+ +D+V+S
Sbjct: 74 LAPQGAAVGELNGSVIGLDLLPMEPIEG-VQYIQGDFREAAVLAQLEALLQGRPVDLVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ +D + +L I F + KP + K++ G +L +
Sbjct: 133 DMAPNLSGVASVDTARVEELVALAIDFCNAHLKPSGTLVAKVFHGSGYNELLALFKNNFK 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK LKP +SR S+E FL+G G K
Sbjct: 193 TVKPLKPKASRDRSSETFLIGSGLK 217
>gi|333913568|ref|YP_004487300.1| ribosomal RNA large subunit methyltransferase E [Delftia sp. Cs1-4]
gi|333743768|gb|AEF88945.1| Ribosomal RNA large subunit methyltransferase E [Delftia sp. Cs1-4]
Length = 217
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 114/205 (55%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A+K+ YR R+A+KL EID ++K +RPG V+D G+ PG+WSQ +
Sbjct: 14 WLNSHVNDPYVKAAQKDGYRARAAYKLKEIDEQLKLIRPGATVVDLGSTPGAWSQYVRRC 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G G ++S+D LP+ PI+G V DF + + +L L K DVV+S
Sbjct: 74 LSPEGAAVGALNGRIISLDLLPMEPIEG-VQFILGDFREEPVLAQLQEALGGGKADVVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G D I L + F++ + KP ++K++ G L + +
Sbjct: 133 DMAPNLSGNGTTDAARIALLVELAVDFSIHHMKPEGALVVKLFHGGAYDDLVALFRQTFK 192
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK +KP SSR S+E FL+G G +
Sbjct: 193 VVKPIKPKSSRDKSSETFLVGMGLR 217
>gi|398855339|ref|ZP_10611835.1| 23S rRNA methylase [Pseudomonas sp. GM80]
gi|398232024|gb|EJN18003.1| 23S rRNA methylase [Pseudomonas sp. GM80]
Length = 209
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 123/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLKR DPYV++A+K+ YR R+++KLLE+ K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLGWLKRHVNDPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMSVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G E+D L + A KPG + +IKI+ G +
Sbjct: 114 QVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAERILKPGGNFVIKIFQGEGFDVYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +++++KP SSR S E ++L G++G+
Sbjct: 174 DARKKFDKIQMIKPDSSRGSSREQYMLAWGYRGR 207
>gi|299066492|emb|CBJ37682.1| 23S rRNA methyltransferase [Ralstonia solanacearum CMR15]
Length = 221
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 119/218 (54%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 2 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 61
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL S + G ++++D LP+ P+ V + DF + + L I+
Sbjct: 62 WSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPV-ADVTFIQGDFREESVFQELEAIVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D K+D+VLSDMAPN +G+ D + +A + FA + KP LIK + G
Sbjct: 121 DATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 181 YSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218
>gi|398864711|ref|ZP_10620242.1| 23S rRNA methylase [Pseudomonas sp. GM78]
gi|398244662|gb|EJN30205.1| 23S rRNA methylase [Pseudomonas sp. GM78]
Length = 209
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 122/214 (57%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLKR DPYV++A+K+ YR R+++KLLE+ K K +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSLGWLKRHVNDPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFTQ ++ +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTQDEVLAQILDAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G +D L + A KPG + +IK++ G +
Sbjct: 114 PVDLVISDMAPNMSGTPAVDMPKAMFLCELALDLAARILKPGGNFVIKVFQGEGFDAYVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V+++KP SSR S E ++L G++G+
Sbjct: 174 DARQKFDKVQMIKPDSSRGSSREQYMLAWGYRGR 207
>gi|349609395|ref|ZP_08888790.1| ribosomal RNA large subunit methyltransferase E [Neisseria sp.
GT4A_CT1]
gi|348611956|gb|EGY61584.1| ribosomal RNA large subunit methyltransferase E [Neisseria sp.
GT4A_CT1]
Length = 206
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINGKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KLV + G V ++D LP+ I+G V + DF + ++ + T+L
Sbjct: 64 SQVAAKLVGN--------SGRVFALDILPMDEIEG-VSFIQGDFREDEVLAQFETLLDAR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FAV + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVTDQARSFYLCELALDFAVNHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|398806574|ref|ZP_10565479.1| 23S rRNA methylase [Polaromonas sp. CF318]
gi|398087919|gb|EJL78496.1| 23S rRNA methylase [Polaromonas sp. CF318]
Length = 251
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
GK + WL DPYV+ A+KE YR R+A+KL EID ++PG V+D G+ PG+
Sbjct: 33 GKGKVNKAWLHEHINDPYVKLAQKEGYRARAAYKLKEIDETFGLVKPGDCVVDLGSTPGA 92
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQ + ++ G + G ++ +D LP+ PI+G V + DF + ++ +L L
Sbjct: 93 WSQYVRRKLSPAGAAAGTLNGRIIGLDLLPMEPIEG-VTFIQGDFREAEVLQQLEDTLAG 151
Query: 135 D----KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
++D+V+SDMAPN +G+ D I L + FA KP ++K++ G
Sbjct: 152 PDGQVQVDLVISDMAPNLSGIESADAARIAHLIELAVEFAQNRMKPDGTLVVKLFHGSGY 211
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
QL + + VK LKP +SR S+E FL+GRG K
Sbjct: 212 DQLVKLFRDTFKVVKPLKPKASRPGSSETFLIGRGLK 248
>gi|345864622|ref|ZP_08816821.1| ribosomal RNA large subunit methyltransferase E [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345877969|ref|ZP_08829700.1| carbamoyl-phosphate synthase large chain [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225008|gb|EGV51380.1| carbamoyl-phosphate synthase large chain [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|345124319|gb|EGW54200.1| ribosomal RNA large subunit methyltransferase E [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 206
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 118/212 (55%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS WL R F D YV++A+K YR R+ FKLLEI K + ++PG++V+D GAAPG W
Sbjct: 3 KSKSSRRWLDRHFNDEYVKRAQKLGYRSRAVFKLLEIQEKGRLIKPGMRVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA LV KG V+++D L + PI G ++ + DF + +L L +
Sbjct: 63 SQVARDLVGE--------KGRVVALDILEMDPIAGVTII-QGDFREEGPLAQLREQLAGE 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN TGM +D L + FA +PG ++K++ G
Sbjct: 114 PVDLVISDMAPNVTGMVTVDQPRSMYLCELALDFAKEVLRPGGGFVVKVFQGEGFDDYLR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + +V KP SSR+ S E++L+ FK
Sbjct: 174 EMRQAFGRVVSRKPRSSRAKSREIYLVAGNFK 205
>gi|254281755|ref|ZP_04956723.1| ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium NOR51-B]
gi|219677958|gb|EED34307.1| ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium NOR51-B]
Length = 206
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 116/210 (55%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS WLK DPYVQ+A+KE YR R+ +KLLE++ + + +RPG+ VLD GAAPG W
Sbjct: 4 KKSSSRAWLKEHREDPYVQRAQKEGYRSRACYKLLELNERDRLIRPGMTVLDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA LV + KG V++ D LP+ + G L + DFT+ I +L+ +
Sbjct: 64 SQVAANLVGA--------KGRVVASDILPMDSLAGVTFL-QGDFTEEAIYQKLLAEFELA 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+V+SDMAPN +GM +D L + AVT PG + K++ G L +
Sbjct: 115 PPQLVMSDMAPNLSGMTAVDQPRAMALVELALDLAVTLLPPGGAFVAKVFHGEGFEPLLK 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ + +V KP +SR S E++L+ G
Sbjct: 175 ACRGQFDRVLTRKPTASRPRSREVYLVATG 204
>gi|398961646|ref|ZP_10678860.1| 23S rRNA methylase [Pseudomonas sp. GM30]
gi|424921348|ref|ZP_18344709.1| 23S rRNA methylase [Pseudomonas fluorescens R124]
gi|398152229|gb|EJM40754.1| 23S rRNA methylase [Pseudomonas sp. GM30]
gi|404302508|gb|EJZ56470.1| 23S rRNA methylase [Pseudomonas fluorescens R124]
Length = 209
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLKR DPYV++A+K+ YR R+++KLLEI K K +R G+ V+D GAAPG W
Sbjct: 3 RSKTSLGWLKRHVNDPYVKQAQKDGYRSRASYKLLEIQEKYKLIRSGMSVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ ++ R++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDEVLARILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G E+D L + A KPG + +IKI+ G +
Sbjct: 114 QVDLVISDMAPNMSGTPEVDMPKAMFLCELALDLAERILKPGGNFVIKIFQGEGFDVYLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +++++KP SSR S E ++L G++G
Sbjct: 174 DARKKFDKIQMIKPDSSRGSSREQYMLAWGYRG 206
>gi|419795754|ref|ZP_14321335.1| ribosomal RNA large subunit methyltransferase J [Neisseria sicca
VK64]
gi|385700117|gb|EIG30373.1| ribosomal RNA large subunit methyltransferase J [Neisseria sicca
VK64]
Length = 206
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KLV + G V ++D LP+ I+G V + DF + ++ + T+L
Sbjct: 64 SQVAAKLVGN--------SGRVFALDILPMDEIEG-VSFIQGDFREDEVLAQFETLLDAR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FAV + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVTDQARSFYLCELALDFAVNHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|372270323|ref|ZP_09506371.1| ribosomal RNA large subunit methyltransferase E [Marinobacterium
stanieri S30]
Length = 206
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK DP+V++A+K+ YR R+++KLL ++ K K ++PG+ V+D G+APG W
Sbjct: 3 RSKSSARWLKEHVNDPFVKQAQKDGYRSRASYKLLALNEKDKLIKPGMLVIDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+A +LV KG V++ D LP+ + V + DFT+ + D ++ ++ D
Sbjct: 63 SQIASELVGE--------KGKVIASDILPMDALPD-VDFIQGDFTEESVFDEIMGVIADR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+DVV+SDMAPN +G+ D L + A KP + K + G + +
Sbjct: 114 PVDVVISDMAPNLSGVATADQAGSIYLIELALDMAQQVLKPKGSFVAKAFQGEGYEEFVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V I KP +SR+ S E++++GRGFKG
Sbjct: 174 EVRNHFDSVVIRKPEASRARSREVYVVGRGFKG 206
>gi|254804677|ref|YP_003082898.1| ribosomal RNA large subunit methyltransferase j [Neisseria
meningitidis alpha14]
gi|385854943|ref|YP_005901456.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M01-240355]
gi|418288025|ref|ZP_12900548.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis NM233]
gi|418290283|ref|ZP_12902450.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis NM220]
gi|421542207|ref|ZP_15988317.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM255]
gi|421558645|ref|ZP_16004523.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 92045]
gi|254668219|emb|CBA04997.1| ribosomal RNA large subunit methyltransferase j [Neisseria
meningitidis alpha14]
gi|254671945|emb|CBA04325.1| cell division protein FtsJ [Neisseria meningitidis alpha275]
gi|325203884|gb|ADY99337.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M01-240355]
gi|372201873|gb|EHP15748.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis NM220]
gi|372202730|gb|EHP16504.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis NM233]
gi|402318143|gb|EJU53668.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM255]
gi|402337388|gb|EJU72636.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 92045]
Length = 206
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINDKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL S G V ++D LP+ I G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLTGS--------SGAVFALDILPMEAI-GGVSFIQGDFRENDVLAQFETLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|58582573|ref|YP_201589.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|58427167|gb|AAW76204.1| cell division protein [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 224
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 116/210 (55%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK FADPYV+KA+ E R R+A+KL E+ + + L+PG+ V+D GAAPG W
Sbjct: 18 RSKSSQRWLKEHFADPYVKKARAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGW 77
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K + G V+++D L + + G L DF + + + +L D
Sbjct: 78 SQQVRKSMGDSGR--------VVALDILDMPALAGVEFLH-GDFREQAVLSQFEAMLGDV 128
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GM +D + LA + FA + KPG LIK++ G
Sbjct: 129 PVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADAHLKPGGAFLIKLFQGVGSDDYIR 188
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E++ LG+G
Sbjct: 189 ELRRRYEKVTIRKPAASRKRSPEVYALGQG 218
>gi|298368448|ref|ZP_06979766.1| ribosomal RNA large subunit methyltransferase J [Neisseria sp. oral
taxon 014 str. F0314]
gi|298282451|gb|EFI23938.1| ribosomal RNA large subunit methyltransferase J [Neisseria sp. oral
taxon 014 str. F0314]
Length = 206
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 115/206 (55%), Gaps = 9/206 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL D YV A+K+ YR R+A+KLLEI+ K K ++ G + D G+APGSWSQV
Sbjct: 7 SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKRGTVLADLGSAPGSWSQV 66
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV G V ++D LP+ I+G V + DF + D+ R ++L LD
Sbjct: 67 AAKLVGD--------SGKVFALDILPMDEIEG-VSFIQGDFREDDVLARFESLLAGRPLD 117
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+ DMAPN +G D L + FA + K G + L+K++ G + ++
Sbjct: 118 LVICDMAPNMSGNAVTDQARSYYLCELALDFAANHLKTGGNFLVKVFQGAGFQEYTAAMR 177
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGR 224
+S V+ KP +SR+ S+E++LLGR
Sbjct: 178 AVFSTVQTRKPEASRNRSSEIYLLGR 203
>gi|386333241|ref|YP_006029410.1| ribosomal rna large subunit methyltransferase j (cell division
protein ftsj) [Ralstonia solanacearum Po82]
gi|334195689|gb|AEG68874.1| ribosomal rna large subunit methyltransferase j (cell division
protein ftsj) [Ralstonia solanacearum Po82]
Length = 221
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 120/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 2 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 61
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL S + G ++++D LP+ P+ V + DF + + +L I+
Sbjct: 62 WSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPV-ADVTFIQGDFREEAVFQQLEAIVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D K+D+VLSDMAPN +G+ D + +A + FA + KP LIK + G
Sbjct: 121 DATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQVHLKPEGALLIKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 181 YSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218
>gi|83747764|ref|ZP_00944798.1| 23S rRNA Um2552 2'-O-methyltransferase [Ralstonia solanacearum
UW551]
gi|83725536|gb|EAP72680.1| 23S rRNA Um2552 2'-O-methyltransferase [Ralstonia solanacearum
UW551]
Length = 279
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 120/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 60 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 119
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL S + G ++++D LP+ P+ V + DF + + +L I+
Sbjct: 120 WSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPV-ADVAFIQGDFREEAVFQQLEAIVL 178
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D K+D+VLSDMAPN +G+ D + +A + FA + KP LIK + G
Sbjct: 179 DATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFHGSG 238
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 239 YSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 276
>gi|78065909|ref|YP_368678.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. 383]
gi|123568833|sp|Q39HN2.1|RLME_BURS3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|77966654|gb|ABB08034.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia sp. 383]
Length = 220
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GA PGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGS 61
Query: 75 WSQVAV-KLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+++ G+ ++++D LP+ PI V + DF + ++ +L
Sbjct: 62 WSQYARNKLAQGKKRDTEREGGIDGTIVALDILPMEPI-ADVHFLQGDFREDEVLHQLEE 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 VLEGRDVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKTVAPRKPKASRDKSSETFILGRHLK 217
>gi|421887845|ref|ZP_16318981.1| 23S rRNA methyltransferase [Ralstonia solanacearum K60-1]
gi|378966823|emb|CCF95729.1| 23S rRNA methyltransferase [Ralstonia solanacearum K60-1]
Length = 230
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 120/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 11 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 70
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL S + G ++++D LP+ P+ V + DF + + +L I+
Sbjct: 71 WSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPV-ADVTFIQGDFREEAVFQQLEAIVL 129
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D K+D+VLSDMAPN +G+ D + +A + FA + KP LIK + G
Sbjct: 130 DATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFHGSG 189
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 190 YSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 227
>gi|225677266|ref|ZP_03788249.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia endosymbiont of Muscidifurax uniraptor]
gi|225590686|gb|EEH11930.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia endosymbiont of Muscidifurax uniraptor]
Length = 192
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 111/202 (54%), Gaps = 20/202 (9%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D YVQK K+ YR RSA+KL+E+D+K K + G K++D GA+PG WSQVA
Sbjct: 3 DQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVA---------- 52
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI---LKDDKLDVVLSDMAP 146
Q V+++D P+ I+G +F Q DI + L + KD K DV+LSDMAP
Sbjct: 53 -SQKDANVVALDVKPMNAINGV------EFIQCDIINELEILREKFKDQKFDVILSDMAP 105
Query: 147 NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKI 206
+ G++ +DH I L A + FA + G ++KI+ G + + + + VK
Sbjct: 106 ESCGLKSLDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKY 165
Query: 207 LKPPSSRSHSAELFLLGRGFKG 228
KP SSRS S E++L+ GF G
Sbjct: 166 FKPKSSRSESTEMYLVSLGFIG 187
>gi|254516625|ref|ZP_05128684.1| ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium NOR5-3]
gi|219675048|gb|EED31415.1| ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium NOR5-3]
Length = 212
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 117/210 (55%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS WL+ DPYVQ+A+++ YR R+ +KLLE+ + + +RPG+ +LD G+APG W
Sbjct: 4 KRSSSKAWLREHREDPYVQQAQRDGYRSRACYKLLELQERERLIRPGMTILDLGSAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA LV HG V++ D LP+ I G V + DFT+ + +R++T L
Sbjct: 64 SQVAAALVGDHGQ--------VIASDILPMDSIAG-VDFVEGDFTENAVFERILTTLNGK 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+V+SDMAPN +G+ +D L + A PG + K++ G +L +
Sbjct: 115 PADLVISDMAPNMSGVSAVDQPKSIYLVELALDMACRVLAPGGVFVTKVFQGEGFDELFK 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ + +V KP +SR S E++L+ RG
Sbjct: 175 ATREQFDKVLTRKPTASRPRSREVYLVARG 204
>gi|207742905|ref|YP_002259297.1| ribosomal rna large subunit methyltransferase j (cell division
protein ftsj) [Ralstonia solanacearum IPO1609]
gi|421897997|ref|ZP_16328364.1| ribosomal rna large subunit methyltransferase j (cell division
protein ftsj) [Ralstonia solanacearum MolK2]
gi|206589203|emb|CAQ36165.1| ribosomal rna large subunit methyltransferase j (cell division
protein ftsj) [Ralstonia solanacearum MolK2]
gi|206594300|emb|CAQ61227.1| ribosomal rna large subunit methyltransferase j (cell division
protein ftsj) [Ralstonia solanacearum IPO1609]
Length = 230
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 120/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 11 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 70
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL S + G ++++D LP+ P+ V + DF + + +L I+
Sbjct: 71 WSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPV-ADVAFIQGDFREEAVFQQLEAIVL 129
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D K+D+VLSDMAPN +G+ D + +A + FA + KP LIK + G
Sbjct: 130 DATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFHGSG 189
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 190 YSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 227
>gi|350553432|ref|ZP_08922607.1| Ribosomal RNA large subunit methyltransferase E [Thiorhodospira
sibirica ATCC 700588]
gi|349790609|gb|EGZ44515.1| Ribosomal RNA large subunit methyltransferase E [Thiorhodospira
sibirica ATCC 700588]
Length = 208
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 117/212 (55%), Gaps = 9/212 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ SS WL+ F D +V++A+KE YR R+ FKL+EID + + LRPG VLD GAAPG
Sbjct: 2 ARSKSSKRWLREHFNDVHVKRAQKEGYRSRAVFKLIEIDERDRLLRPGATVLDLGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
+SQ A V + G V++ D L + P+DG V+ + DF + + + + +
Sbjct: 62 FSQYAATKVGTQGR--------VVATDILTMEPLDG-VIFIQGDFLEDAVLQAIQAAMGE 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
D+VLSDMAPN +G+ +D LA + A+ KP D L+K++ G
Sbjct: 113 AAADLVLSDMAPNISGVDAVDQPRAMYLAELALDTALHVLKPDGDFLVKLFQGEGFDAYV 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
++ ++ VKI KP +SR+ S E++ L RG
Sbjct: 173 RTLRSHFTAVKIRKPQASRARSREVYALARGL 204
>gi|71906582|ref|YP_284169.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Dechloromonas aromatica
RCB]
gi|83305658|sp|Q47HI2.1|RLME_DECAR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|71846203|gb|AAZ45699.1| 23S rRNA Um-2552 2'-O-methyltransferase [Dechloromonas aromatica
RCB]
Length = 205
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 119/212 (56%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S W++ D YVQ A+KE +R R+AFKL+E+D K K L+ G V+D GA PG W
Sbjct: 3 RTRTSKAWMREHINDTYVQLARKEGWRSRAAFKLMEMDDKDKLLKHGEVVVDLGATPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVAVK V GLV ++D L + PI G V + DF + ++ +L L +
Sbjct: 63 SQVAVKRVGD--------GGLVFALDLLEMEPIHG-VHFIQGDFREDEVLQQLEEQLGER 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++ +V+SDMAPN +G+ +D I LA + F+ + KP L+K++ G + +
Sbjct: 114 RVGLVMSDMAPNMSGVPLVDQARIMHLAELGLEFSRVHLKPEGAFLVKVFQGTDYETFLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + V + KP +SR S EL+LLGR +
Sbjct: 174 QMRETFKTVAVRKPDASRDRSPELYLLGRTLR 205
>gi|300123620|emb|CBK24892.2| Ribosomal RNA methyltransferase [Blastocystis hominis]
Length = 259
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 115/213 (53%), Gaps = 7/213 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KGK HSS +WL RQ DPY AK+E YR R+ +KL EID + R G V+D GAAPG
Sbjct: 53 KGKSHSSTIWLDRQLRDPYTIMAKEEGYRSRAVYKLKEIDERFHVFREGNIVVDVGAAPG 112
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ AV+ V S V S+D L I PI G L DF + +L +
Sbjct: 113 GWSQYAVERVGITIPHS------VFSIDLLDIEPITGVHFLCG-DFMSESARCKLEDYID 165
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ ++DVV+SD+APN +G +DH+ + +VI FA +K ++K+ G P
Sbjct: 166 NRRVDVVISDIAPNFSGDHSIDHEKQIDMCESVIEFAKRVAKKDCSVVLKVLQGEEFPSF 225
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+S+ + V ++KP +SR S E++ + + F
Sbjct: 226 MKSVRSQFQSVNLIKPKASRKKSTEIYCVLKHF 258
>gi|59800827|ref|YP_207539.1| hypothetical protein NGO0383 [Neisseria gonorrhoeae FA 1090]
gi|240013700|ref|ZP_04720613.1| hypothetical protein NgonD_03460 [Neisseria gonorrhoeae DGI18]
gi|240016140|ref|ZP_04722680.1| hypothetical protein NgonFA_03058 [Neisseria gonorrhoeae FA6140]
gi|240120769|ref|ZP_04733731.1| hypothetical protein NgonPI_03133 [Neisseria gonorrhoeae PID24-1]
gi|268603220|ref|ZP_06137387.1| cell division protein [Neisseria gonorrhoeae PID1]
gi|293399468|ref|ZP_06643621.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae F62]
gi|75356299|sp|Q5F9L0.1|RLME_NEIG1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|59717722|gb|AAW89127.1| putative methyltranferase involved in cell division [Neisseria
gonorrhoeae FA 1090]
gi|268587351|gb|EEZ52027.1| cell division protein [Neisseria gonorrhoeae PID1]
gi|291610037|gb|EFF39159.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae F62]
Length = 206
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHINDQYVHMAQKDGYRARAAYKLLEINEKDKIIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL + G V ++D LP+ I G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLTGT--------SGAVFALDILPMEAI-GGVSFIQGDFRENDVLAQFETLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|397688599|ref|YP_006525918.1| cell division protein FtsJ [Pseudomonas stutzeri DSM 10701]
gi|395810155|gb|AFN79560.1| cell division protein FtsJ [Pseudomonas stutzeri DSM 10701]
Length = 206
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 126/215 (58%), Gaps = 15/215 (6%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL DPYV+KA+K+ R RS++KL+E++ K K +RPG+ V+D G+APG W
Sbjct: 3 RSKSSRRWLDEHVNDPYVKKAQKDGLRSRSSYKLVELNEKDKLIRPGMLVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA LV KG V++ D LP+ P+D V + DFT + +++ L
Sbjct: 63 SQVAGGLVGE--------KGRVIATDILPMDPLDN-VDFIQGDFTDDAVFQQILARLDGR 113
Query: 136 KLDVVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
+ D+++SD+APN +G+ D + +L + ++R + KPG + ++K++ G Q
Sbjct: 114 QPDLIVSDIAPNISGIAAADQASSMYLVELTLDMVRQVL---KPGGNYVVKVFQGEGSDQ 170
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + +V I KP +SR S E++L+G+GFK
Sbjct: 171 FLKDVRTSFEKVVIRKPEASRPRSREVYLVGKGFK 205
>gi|88606902|ref|YP_505099.1| ribosomal RNA large subunit methyltransferase J [Anaplasma
phagocytophilum HZ]
gi|123495326|sp|Q2GKK2.1|RLME_ANAPZ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|88597965|gb|ABD43435.1| ribosomal RNA large subunit methyltransferase J [Anaplasma
phagocytophilum HZ]
Length = 247
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 116/221 (52%), Gaps = 13/221 (5%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ KG+ SS W++RQ D YV AKKE YR RSA+KL+EI+ K K L+ G VLD G+
Sbjct: 37 KTAKGRKISSTNWIRRQVNDQYVSLAKKEGYRSRSAYKLIEINDKFKILQRGRFVLDLGS 96
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDI---QDR 127
+PG W+QVA K N+ DS +P V++VD I + F Q DI D
Sbjct: 97 SPGGWAQVASK--NTAIIDSTEPT--VVAVD------IQSMKDIHNVSFVQCDIDSDHDL 146
Query: 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187
L L K DVVLSDMAP + G R++DH I L A+ Y P + K+ G
Sbjct: 147 LNEKLSGRKFDVVLSDMAPKSCGHRQVDHANIINLCELARDIALEYLNPNGSFVTKLLHG 206
Query: 188 RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ SI + V KP SSR S+E++L+ FKG
Sbjct: 207 EYEQEFRRSIMTHFGVVSYFKPKSSRKDSSEIYLVALKFKG 247
>gi|398811715|ref|ZP_10570504.1| 23S rRNA methylase [Variovorax sp. CF313]
gi|398079805|gb|EJL70643.1| 23S rRNA methylase [Variovorax sp. CF313]
Length = 253
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 114/205 (55%), Gaps = 1/205 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A KE YR R+A+KL EID + ++PG V+D G+ PG+WSQ +
Sbjct: 45 WLHDHINDPYVKLATKEGYRARAAYKLKEIDESLGLVKPGQLVVDLGSTPGAWSQYLRRR 104
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G + + G ++S+D LP+ PI+G L + DF + + +L+ +L K D+V+S
Sbjct: 105 MSPGGAAAGELNGTIVSLDILPMEPIEGVTFL-QGDFREDALLQQLLGVLAGRKADLVVS 163
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D + L I FA + KP + K++ G L + +
Sbjct: 164 DMAPNLSGIHSADAARVAHLIELAIDFAQHHLKPEGALVAKLFHGSGYDDLVKLFKANFR 223
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK KP +SR SAE FL+G G K
Sbjct: 224 IVKPFKPKASRDKSAETFLVGVGLK 248
>gi|358333226|dbj|GAA51779.1| ribosomal RNA large subunit methyltransferase E [Clonorchis
sinensis]
Length = 434
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 128/253 (50%), Gaps = 48/253 (18%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIK--FLRPGLKVLDCGAAPGSWSQVAV 80
WL RQ +DPYV+ A+ E++RCRSAFKLL++ K+ + PG V+DCGAAPGSWSQVA
Sbjct: 174 WLARQRSDPYVKLARIESFRCRSAFKLLQLQEKLSGSLISPGDIVVDCGAAPGSWSQVAT 233
Query: 81 KLVNSHGYDSKQPKG--LVLSVDKLPIYPIDGAVVLSKCD---------FTQPDIQDRL- 128
V+ S LV++ D L P+ G K D ++D L
Sbjct: 234 SFVSPSPGGSSAGSSSGLVIAFDLLDFAPLPGVSRFCKVDVRDSAKCVQLVNETVRDYLK 293
Query: 129 ---VTILKDDKL---DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
T + + L +VVLSDMAPN TG++E+D + LA +V++ AV S PGA ++
Sbjct: 294 RLGSTTVAEGSLSHVNVVLSDMAPNVTGLQELDVPAMMDLANSVLQLAVRTSAPGASLVM 353
Query: 183 KIWDGRNRPQLEESITRFYS----------------------------QVKILKPPSSRS 214
K+W + ++RFY V+ KP +SRS
Sbjct: 354 KLWQSSEADEFLSVVSRFYRGPWNSAVKPPNHKPYPQTKEKRREDPGPAVRFFKPAASRS 413
Query: 215 HSAELFLLGRGFK 227
SAE++L+ RGF+
Sbjct: 414 DSAEIYLIARGFQ 426
>gi|194098119|ref|YP_002001167.1| putative cell division protein [Neisseria gonorrhoeae NCCP11945]
gi|254493296|ref|ZP_05106467.1| cell division protein FtsJ [Neisseria gonorrhoeae 1291]
gi|268594434|ref|ZP_06128601.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae 35/02]
gi|268596430|ref|ZP_06130597.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae FA19]
gi|268600914|ref|ZP_06135081.1| cell division protein [Neisseria gonorrhoeae PID18]
gi|268681701|ref|ZP_06148563.1| cell division protein FtsJ [Neisseria gonorrhoeae PID332]
gi|268683928|ref|ZP_06150790.1| cell division protein [Neisseria gonorrhoeae SK-92-679]
gi|268686171|ref|ZP_06153033.1| cell division protein [Neisseria gonorrhoeae SK-93-1035]
gi|291044276|ref|ZP_06569985.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae DGI2]
gi|385335306|ref|YP_005889253.1| putative cell division protein [Neisseria gonorrhoeae TCDC-NG08107]
gi|226703876|sp|B4RK82.1|RLME_NEIG2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|193933409|gb|ACF29233.1| putative cell division protein [Neisseria gonorrhoeae NCCP11945]
gi|226512336|gb|EEH61681.1| cell division protein FtsJ [Neisseria gonorrhoeae 1291]
gi|268547823|gb|EEZ43241.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae 35/02]
gi|268550218|gb|EEZ45237.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae FA19]
gi|268585045|gb|EEZ49721.1| cell division protein [Neisseria gonorrhoeae PID18]
gi|268621985|gb|EEZ54385.1| cell division protein FtsJ [Neisseria gonorrhoeae PID332]
gi|268624212|gb|EEZ56612.1| cell division protein [Neisseria gonorrhoeae SK-92-679]
gi|268626455|gb|EEZ58855.1| cell division protein [Neisseria gonorrhoeae SK-93-1035]
gi|291011170|gb|EFE03166.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae DGI2]
gi|317163849|gb|ADV07390.1| putative cell division protein [Neisseria gonorrhoeae TCDC-NG08107]
Length = 206
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHINDHYVHMAQKDGYRARAAYKLLEINEKDKIIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL + G V ++D LP+ I G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLTGT--------SGTVFALDILPMEAI-GGVSFIQGDFRENDVLAQFETLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|421557023|ref|ZP_16002932.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 80179]
gi|402335708|gb|EJU70972.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 80179]
Length = 206
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL + G V ++D LP+ I G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLTGT--------SGAVFALDILPMEAI-GGVSFIQGDFRENDVLAQFETLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|334345476|ref|YP_004554028.1| ribosomal RNA large subunit methyltransferase E [Sphingobium
chlorophenolicum L-1]
gi|334102098|gb|AEG49522.1| Ribosomal RNA large subunit methyltransferase E [Sphingobium
chlorophenolicum L-1]
Length = 223
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 118/219 (53%), Gaps = 17/219 (7%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ S WL+RQ DPYV++AK E +R R+AFKL+E+D K F++ V+D G APG
Sbjct: 15 KGRTAQSTRWLERQLNDPYVRRAKAEGWRSRAAFKLIELDEKFHFVKGSRAVVDLGVAPG 74
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV KL PK V+ +D LP PI G V L + DF + D+ +L
Sbjct: 75 GWAQVVRKLC---------PKAKVVGIDLLPTDPIPG-VTLFQMDF----MDDKAPVLLA 120
Query: 134 D---DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+ D D+V+SDMA N G DH L A FAV + G + K++ G
Sbjct: 121 EALGDAPDLVISDMAANTVGHAATDHLRTMGLVEAAAMFAVENLRKGGTFVAKVFAGGTD 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
L + + ++ +K KPP+SR S E +++ +GFKG+
Sbjct: 181 ADLLAILKKHFTTIKHAKPPASRKGSVEWYVVAQGFKGR 219
>gi|413958461|ref|ZP_11397700.1| 23S rRNA methyltransferase J [Burkholderia sp. SJ98]
gi|413941041|gb|EKS73001.1| 23S rRNA methyltransferase J [Burkholderia sp. SJ98]
Length = 220
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 123/217 (56%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ +H WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D G+ PGS
Sbjct: 2 AKNRFNHSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGSTPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+++ G+ ++++D LP+ PI V + DF + ++ +L
Sbjct: 62 WSQYARNKLAQGAKRDAERQGGIDGTIIALDILPMEPISD-VTFIQGDFREDEVLAQLDE 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
I+ + ++D+V+SDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 IVGERQVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPEGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRRLK 217
>gi|421539978|ref|ZP_15986131.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 93004]
gi|421560976|ref|ZP_16006829.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM2657]
gi|402320262|gb|EJU55753.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 93004]
gi|402339456|gb|EJU74672.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM2657]
Length = 206
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINDKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL S G V ++D LP+ I G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLTGS--------SGAVFALDILPMEAI-GGVSFIQGDFRENDVLAQFETLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQVRSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|296112663|ref|YP_003626601.1| FtsJ-like methyltransferase [Moraxella catarrhalis RH4]
gi|416155926|ref|ZP_11604219.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
101P30B1]
gi|416217070|ref|ZP_11624019.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
7169]
gi|416220266|ref|ZP_11625358.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
103P14B1]
gi|416228508|ref|ZP_11627662.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
46P47B1]
gi|416233476|ref|ZP_11629305.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
12P80B1]
gi|416237147|ref|ZP_11630669.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BC1]
gi|416242014|ref|ZP_11633148.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BC7]
gi|416247226|ref|ZP_11635532.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BC8]
gi|416250022|ref|ZP_11637031.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
CO72]
gi|416254106|ref|ZP_11638540.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
O35E]
gi|421779483|ref|ZP_16215975.1| FtsJ-like methyltransferase [Moraxella catarrhalis RH4]
gi|295920357|gb|ADG60708.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BBH18]
gi|326560921|gb|EGE11286.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
7169]
gi|326563843|gb|EGE14094.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
46P47B1]
gi|326566515|gb|EGE16661.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
12P80B1]
gi|326566854|gb|EGE16993.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
103P14B1]
gi|326569819|gb|EGE19869.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BC8]
gi|326571269|gb|EGE21291.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BC1]
gi|326571575|gb|EGE21590.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BC7]
gi|326575145|gb|EGE25073.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
CO72]
gi|326576769|gb|EGE26676.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
101P30B1]
gi|326577555|gb|EGE27432.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
O35E]
gi|407813193|gb|EKF83975.1| FtsJ-like methyltransferase [Moraxella catarrhalis RH4]
Length = 210
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 118/202 (58%), Gaps = 9/202 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W+K D YVQKA+KE YR R+A+KLLEI+ K ++ G+ V+D G+APGSWSQV
Sbjct: 13 SSRAWMKEHIDDFYVQKAQKEGYRARAAYKLLEINEKTGLIKKGMTVVDLGSAPGSWSQV 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +LV G +++ D LP+ ++ V+ + DF + + ++++ + +D
Sbjct: 73 AGQLVGDA--------GTLIASDILPMDTLEN-VIFIQGDFREEAVFNQIMNEVGGRAVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMAPN +GM +D + L + FA+ G ++K++ G +L +
Sbjct: 124 VVLSDMAPNTSGMAAVDQPRMMYLCELAVDFALKVLPVGGALIMKVFQGEGSQELRAQMQ 183
Query: 199 RFYSQVKILKPPSSRSHSAELF 220
+ +S++K +KP +SR S E+F
Sbjct: 184 KQFSKIKSIKPAASRPRSKEMF 205
>gi|15676697|ref|NP_273841.1| cell division protein FtsJ [Neisseria meningitidis MC58]
gi|161869743|ref|YP_001598910.1| cell division protein [Neisseria meningitidis 053442]
gi|218767917|ref|YP_002342429.1| cell division protein [Neisseria meningitidis Z2491]
gi|304387890|ref|ZP_07370064.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis ATCC 13091]
gi|385324447|ref|YP_005878886.1| ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase; 23S rRNA m2U2552
methyltransferase; cell division protein FtsJ)
[Neisseria meningitidis 8013]
gi|385328133|ref|YP_005882436.1| putative cell division protein [Neisseria meningitidis alpha710]
gi|385337751|ref|YP_005891624.1| ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase; 23S rRNA m2U2552
methyltransferase; cell division protein FtsJ)
[Neisseria meningitidis WUE 2594]
gi|385339773|ref|YP_005893645.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis G2136]
gi|385342200|ref|YP_005896071.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M01-240149]
gi|385851537|ref|YP_005898052.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M04-240196]
gi|385853513|ref|YP_005900027.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis H44/76]
gi|385856953|ref|YP_005903465.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis NZ-05/33]
gi|416162842|ref|ZP_11606851.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis N1568]
gi|416172576|ref|ZP_11608769.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis OX99.30304]
gi|416183699|ref|ZP_11612712.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M13399]
gi|416188196|ref|ZP_11614665.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M0579]
gi|416213911|ref|ZP_11622604.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M01-240013]
gi|421544174|ref|ZP_15990252.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM140]
gi|421546284|ref|ZP_15992333.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM183]
gi|421548553|ref|ZP_15994578.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM2781]
gi|421550353|ref|ZP_15996358.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 69166]
gi|421552578|ref|ZP_15998552.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM576]
gi|421563027|ref|ZP_16008849.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM2795]
gi|421565089|ref|ZP_16010875.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM3081]
gi|421906595|ref|ZP_16336488.1| cell division protein FtsJ [Neisseria meningitidis alpha704]
gi|427828521|ref|ZP_18995537.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
H44/76]
gi|433464782|ref|ZP_20422267.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM422]
gi|433466949|ref|ZP_20424406.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
87255]
gi|433468956|ref|ZP_20426385.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
98080]
gi|433471197|ref|ZP_20428588.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
68094]
gi|433473203|ref|ZP_20430567.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
97021]
gi|433475409|ref|ZP_20432750.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
88050]
gi|433477288|ref|ZP_20434611.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
70012]
gi|433479507|ref|ZP_20436801.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
63041]
gi|433481752|ref|ZP_20439017.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2006087]
gi|433483738|ref|ZP_20440966.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2002038]
gi|433485937|ref|ZP_20443138.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
97014]
gi|433488033|ref|ZP_20445201.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
M13255]
gi|433490151|ref|ZP_20447280.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM418]
gi|433504558|ref|ZP_20461498.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
9506]
gi|433506821|ref|ZP_20463733.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
9757]
gi|433509002|ref|ZP_20465875.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
12888]
gi|433511066|ref|ZP_20467898.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
4119]
gi|433513158|ref|ZP_20469952.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
63049]
gi|433515471|ref|ZP_20472243.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2004090]
gi|433517305|ref|ZP_20474054.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
96023]
gi|433519525|ref|ZP_20476246.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
65014]
gi|433521627|ref|ZP_20478322.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
61103]
gi|433523594|ref|ZP_20480259.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
97020]
gi|433525670|ref|ZP_20482304.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
69096]
gi|433527914|ref|ZP_20484525.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM3652]
gi|433530088|ref|ZP_20486681.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM3642]
gi|433532346|ref|ZP_20488912.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2007056]
gi|433534230|ref|ZP_20490775.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2001212]
gi|433538680|ref|ZP_20495160.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
70030]
gi|433540658|ref|ZP_20497113.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
63006]
gi|81542244|sp|Q9JQX5.1|RLME_NEIMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|81707224|sp|Q7DDL2.1|RLME_NEIMB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040316|sp|A9M3N1.1|RLME_NEIM0 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|7226032|gb|AAF41212.1| cell division protein FtsJ [Neisseria meningitidis MC58]
gi|121051925|emb|CAM08231.1| putative cell division protein [Neisseria meningitidis Z2491]
gi|161595296|gb|ABX72956.1| cell division protein [Neisseria meningitidis 053442]
gi|261392834|emb|CAX50415.1| ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase; 23S rRNA m2U2552
methyltransferase; cell division protein FtsJ)
[Neisseria meningitidis 8013]
gi|304338155|gb|EFM04291.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis ATCC 13091]
gi|308388985|gb|ADO31305.1| putative cell division protein [Neisseria meningitidis alpha710]
gi|316983790|gb|EFV62771.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
H44/76]
gi|319410165|emb|CBY90501.1| ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase; 23S rRNA m2U2552
methyltransferase; cell division protein FtsJ)
[Neisseria meningitidis WUE 2594]
gi|325127924|gb|EGC50827.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis N1568]
gi|325129969|gb|EGC52768.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis OX99.30304]
gi|325134056|gb|EGC56711.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M13399]
gi|325135979|gb|EGC58589.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M0579]
gi|325144164|gb|EGC66471.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M01-240013]
gi|325198017|gb|ADY93473.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis G2136]
gi|325200517|gb|ADY95972.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis H44/76]
gi|325202406|gb|ADY97860.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M01-240149]
gi|325206360|gb|ADZ01813.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M04-240196]
gi|325207842|gb|ADZ03294.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis NZ-05/33]
gi|393292343|emb|CCI72429.1| cell division protein FtsJ [Neisseria meningitidis alpha704]
gi|402324019|gb|EJU59457.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM183]
gi|402324286|gb|EJU59722.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM140]
gi|402326214|gb|EJU61619.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM2781]
gi|402330568|gb|EJU65915.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 69166]
gi|402331210|gb|EJU66551.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM576]
gi|402341734|gb|EJU76907.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM2795]
gi|402345418|gb|EJU80535.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM3081]
gi|432203525|gb|ELK59576.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
87255]
gi|432204269|gb|ELK60314.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM422]
gi|432205349|gb|ELK61379.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
98080]
gi|432209686|gb|ELK65653.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
68094]
gi|432210804|gb|ELK66760.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
97021]
gi|432211227|gb|ELK67182.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
88050]
gi|432216510|gb|ELK72391.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
70012]
gi|432217310|gb|ELK73179.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
63041]
gi|432217583|gb|ELK73451.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2006087]
gi|432221441|gb|ELK77251.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2002038]
gi|432222983|gb|ELK78765.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
97014]
gi|432224499|gb|ELK80264.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
M13255]
gi|432228059|gb|ELK83760.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM418]
gi|432242073|gb|ELK97597.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
9506]
gi|432242610|gb|ELK98128.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
9757]
gi|432247816|gb|ELL03251.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
12888]
gi|432248557|gb|ELL03982.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
4119]
gi|432248835|gb|ELL04259.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
63049]
gi|432254059|gb|ELL09395.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2004090]
gi|432254314|gb|ELL09649.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
96023]
gi|432255516|gb|ELL10845.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
65014]
gi|432260400|gb|ELL15659.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
61103]
gi|432260493|gb|ELL15751.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
97020]
gi|432261861|gb|ELL17106.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
69096]
gi|432266221|gb|ELL21409.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM3652]
gi|432268016|gb|ELL23188.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM3642]
gi|432268291|gb|ELL23462.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2007056]
gi|432272740|gb|ELL27847.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2001212]
gi|432274688|gb|ELL29775.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
70030]
gi|432277673|gb|ELL32719.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
63006]
Length = 206
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL + G V ++D LP+ I G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLTGT--------SGAVFALDILPMEAI-GGVSFIQGDFRENDVLAQFETLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|300703813|ref|YP_003745415.1| 23S rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
gi|299071476|emb|CBJ42798.1| 23S rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
Length = 221
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 120/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 2 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 61
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL S + G ++++D LP+ P+ V + DF + + +L I+
Sbjct: 62 WSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEPV-ADVTFIQGDFREEAVFRQLEAIVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D K+D+VLSDMAPN +G+ D + +A + FA + KP LIK + G
Sbjct: 121 DATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAQAHLKPEGALLIKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 181 YSQIVEMFKRHFRVVAPRKPKASRDKSSETFLLGRQLK 218
>gi|294142068|ref|YP_003558046.1| ribosomal RNA large subunit methyltransferase J [Shewanella
violacea DSS12]
gi|293328537|dbj|BAJ03268.1| ribosomal RNA large subunit methyltransferase J [Shewanella
violacea DSS12]
Length = 209
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 116/214 (54%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F D YV+ A+K R R+AFKL EI K K +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSSRWLQEHFDDHYVKLAQKRGLRSRAAFKLEEIQEKDKLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVKL +G V++ D L + PI G L + DF + + D L+T +
Sbjct: 64 GWSQVAVKLAGD--------RGKVIACDILAMDPIVGVDFL-QGDFREEKVLDALLTRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 DGKVDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVMAPNGCFAVKVFQGEGFEEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+S+ + VK KP SSR+ S E++L+ G+K
Sbjct: 175 MKSVRAAFKTVKTRKPDSSRARSREVYLVATGYK 208
>gi|350544011|ref|ZP_08913677.1| Cell division protein FtsJ / Ribosomal RNAlarge subunit
methyltransferase E [Candidatus Burkholderia kirkii
UZHbot1]
gi|350528200|emb|CCD36234.1| Cell division protein FtsJ / Ribosomal RNAlarge subunit
methyltransferase E [Candidatus Burkholderia kirkii
UZHbot1]
Length = 239
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 5/223 (2%)
Query: 9 LKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDC 68
+ V K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG+ ++D
Sbjct: 15 MSSVSMAKNRFNQSWLHDHINDPYVKMARREGYRARAAYKLKEIDEQDKLIKPGMVIVDL 74
Query: 69 GAAPGSWSQVAV-KLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDI 124
G+ PGSWSQ A KL S D+++ G+ ++++D LP+ I V + DF + D+
Sbjct: 75 GSTPGSWSQYARNKLTQSAKRDAQREGGIDGKIIALDILPMETI-ADVTFIQGDFREDDV 133
Query: 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184
+L I+ + ++D+V+SDMAPN +G+ D I L + FA + KP L+K
Sbjct: 134 LAKLDEIVGEQQIDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPEGALLVKC 193
Query: 185 WDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G Q+ E + V KP +SR S+E F+LGR K
Sbjct: 194 LRGSGYSQIVEKFKHQFKVVAPRKPKASRDKSSETFILGRRLK 236
>gi|343498315|ref|ZP_08736354.1| 23S rRNA methyltransferase J [Vibrio tubiashii ATCC 19109]
gi|418480972|ref|ZP_13050024.1| 23S rRNA methyltransferase J [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342824756|gb|EGU59291.1| 23S rRNA methyltransferase J [Vibrio tubiashii ATCC 19109]
gi|384571417|gb|EIF01951.1| 23S rRNA methyltransferase J [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 209
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G +++ D LP+ PI G L + DF + + D L+ ++ +D
Sbjct: 69 AAKIVGEDGQ--------IIACDLLPMDPIAGVSFL-QGDFREEAVLDALLDRIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQFVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDTFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|34499253|ref|NP_903468.1| cell division protein FtsJ [Chromobacterium violaceum ATCC 12472]
gi|81654487|sp|Q7NRI3.1|RLME_CHRVO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|34105104|gb|AAQ61460.1| cell division protein FtsJ [Chromobacterium violaceum ATCC 12472]
Length = 205
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 118/211 (55%), Gaps = 9/211 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ SS+ WL+ D YV A+K+ YR R+A+KLLEI+ K K +RPG + D G+ PGS
Sbjct: 2 ARSKSSNNWLQEHVNDQYVHMAQKDGYRARAAYKLLEINDKDKLIRPGTVLADLGSTPGS 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQVA ++V KG V ++D L + P+ G V + DF + + +L
Sbjct: 62 WSQVAARIVGE--------KGKVFALDILDMDPVPG-VDFIQGDFREEAVLREFEQLLDG 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
LD+V+SDMAPN +GM +D L + FA + KPG L+K++ G +
Sbjct: 113 RALDLVISDMAPNMSGMSAIDQARSFLLCELALEFARDHLKPGGHFLVKVFQGSDFQPYL 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+++ + +V KP +SR S+E++LLG+G
Sbjct: 173 KAMRELFDEVVTRKPKASRDRSSEIYLLGKG 203
>gi|254252702|ref|ZP_04946020.1| 23S rRNA methylase [Burkholderia dolosa AUO158]
gi|124895311|gb|EAY69191.1| 23S rRNA methylase [Burkholderia dolosa AUO158]
Length = 220
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ PI V + DF + D+ +L
Sbjct: 62 WSQYARNKLAQGKRRDAVREGGIDGTIVALDMLPMEPI-ADVHFIQGDFREDDVLHQLED 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 121 VLEGRPVDLVISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRHLK 217
>gi|325916042|ref|ZP_08178332.1| 23S rRNA Um-2552 2'-O-methyltransferase [Xanthomonas vesicatoria
ATCC 35937]
gi|325537718|gb|EGD09424.1| 23S rRNA Um-2552 2'-O-methyltransferase [Xanthomonas vesicatoria
ATCC 35937]
Length = 210
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 116/210 (55%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK FADPYV+KA+ E R R+A+KL E+ + + L+PG+ V+D GAAPG W
Sbjct: 4 RSKSSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPGMVVVDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K + G VL++D L + + G L DF + + + +L D
Sbjct: 64 SQQVRKSMGDSGR--------VLALDILDMPALAGVDFL-HGDFREQAVLSQFEAMLGDV 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GM +D + LA + FA T+ K G LIK++ G
Sbjct: 115 PVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKTGGAFLIKLFQGVGSDDYIR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E++ LG+G
Sbjct: 175 ELRRRYDKVTIRKPAASRKRSPEVYALGQG 204
>gi|225025120|ref|ZP_03714312.1| hypothetical protein EIKCOROL_02012 [Eikenella corrodens ATCC
23834]
gi|224942081|gb|EEG23290.1| hypothetical protein EIKCOROL_02012 [Eikenella corrodens ATCC
23834]
Length = 207
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 124/209 (59%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL DPYV +A+K+ YR R+A+KLLEI+ K K ++ G + D G+APGSW
Sbjct: 5 RSKSSKSWLNEHVNDPYVHQAQKDGYRARAAYKLLEINEKDKLIKNGTVLADLGSAPGSW 64
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVAVKL + +G V ++D LP+ PI G V + DF + ++ + L +L+
Sbjct: 65 SQVAVKLAGA--------QGRVFALDILPMEPIAG-VSFIQGDFRENEVLEELENLLEGR 115
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ D+APN +G D L + FA + K G + L+K++ G + +
Sbjct: 116 ALDLVICDIAPNMSGNAVTDQARSYVLCELALDFAAEHLKTGGNMLVKVFQGAGFQEYMQ 175
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ ++QV++ KP +SRS S+E++LLGR
Sbjct: 176 AMRGVFAQVQVRKPKASRSRSSEVYLLGR 204
>gi|421480885|ref|ZP_15928478.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
multivorans CF2]
gi|400220326|gb|EJO50872.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
multivorans CF2]
Length = 220
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVAV-KLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ PI V + DF + ++ +L
Sbjct: 62 WSQYARNKLAQGKKRDTVREGGIDGTIVALDMLPMEPI-ADVHFIQGDFREDEVLHQLEA 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 121 VLEGRTVDLVISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRHLK 217
>gi|294669674|ref|ZP_06734741.1| hypothetical protein NEIELOOT_01575 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308587|gb|EFE49830.1| hypothetical protein NEIELOOT_01575 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 248
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 121/219 (55%), Gaps = 11/219 (5%)
Query: 8 KLKEVPK--GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
K + VP+ + SS WL D YV +A+K+ YR R+A+KLLEI+ K + ++PG +
Sbjct: 36 KYRWVPEMAARSKSSKAWLNEHVNDHYVHQAQKDGYRARAAYKLLEINEKDRLIQPGTVL 95
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
D G+APGSWSQVA +L KG V ++D LP+ PI G V + DF + ++
Sbjct: 96 ADLGSAPGSWSQVAAELAGE--------KGAVFALDILPMEPIAG-VSFIQGDFREDEVL 146
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ ++L D LD+V+ DMAPN +G D L + FA + K L+K++
Sbjct: 147 AQFESLLGDRLLDLVICDMAPNMSGHAVTDQAKSLYLCKLALDFARNHLKTNGHFLVKVF 206
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGR 224
G + + +S V+ KP +SR+ S+E++LLGR
Sbjct: 207 QGAGYTEFLAEMRAAFSSVQTRKPGASRNRSSEIYLLGR 245
>gi|161525194|ref|YP_001580206.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia multivorans
ATCC 17616]
gi|189350067|ref|YP_001945695.1| cell division protein methyltransferase [Burkholderia multivorans
ATCC 17616]
gi|226703287|sp|A9ACL8.1|RLME_BURM1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|160342623|gb|ABX15709.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia multivorans
ATCC 17616]
gi|189334089|dbj|BAG43159.1| cell division protein methyltransferase [Burkholderia multivorans
ATCC 17616]
Length = 220
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVAV-KLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ PI V + DF + ++ +L
Sbjct: 62 WSQYARNKLAQGKKRDAVREGGIDGTIVALDMLPMEPI-ADVHFIQGDFREDEVLHQLEA 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 121 VLEGRTVDLVISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRHLK 217
>gi|399522684|ref|ZP_10763347.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399109548|emb|CCH39908.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 209
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL DPYV++A+K+ YR R+A+KL+EI+ K K +RPG+ ++D G+APG W
Sbjct: 3 RSKSSSRWLNEHVNDPYVKQAQKDGYRSRAAYKLIEINEKDKLIRPGMLMMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+A ++V + G V++ D LP+ +D V + DFT + +++ +L
Sbjct: 63 SQIAGRMVGATGR--------VIASDILPMDSLDN-VDFIQGDFTDDKVFQQILDLLDGR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+++SD+APN +G+ D L V+ A KPG + + K++ G +
Sbjct: 114 RPDLIVSDIAPNISGVGVADQAASMYLVELVLDMARQVLKPGGNFVAKVFQGEGSDEYLR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R + +V + KP +SR S E++ + +GFKG
Sbjct: 174 DVRRSFEKVMVRKPAASRPRSREVYFVAKGFKG 206
>gi|323492035|ref|ZP_08097200.1| 23S rRNA methyltransferase J [Vibrio brasiliensis LMG 20546]
gi|323313764|gb|EGA66863.1| 23S rRNA methyltransferase J [Vibrio brasiliensis LMG 20546]
Length = 209
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G +++ D LP+ PI G L + DF + + + L+ ++ +D
Sbjct: 69 AAKIVGEEGQ--------IIACDLLPMDPIAGVSFL-QGDFREEAVLEALLDRIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQFVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDTFKAVKIRKPDSSRARSREVFVVATGYKG 209
>gi|421857650|ref|ZP_16289979.1| ribosomal RNA large subunit methyltransferase E, partial
[Acinetobacter radioresistens DSM 6976 = NBRC 102413]
gi|403186913|dbj|GAB76180.1| ribosomal RNA large subunit methyltransferase E, partial
[Acinetobacter radioresistens DSM 6976 = NBRC 102413]
Length = 197
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 113/194 (58%), Gaps = 9/194 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV KGLV++ D LP+ + V + DF + ++ ++L+ IL ++D
Sbjct: 73 AGKLVGD--------KGLVIASDILPMDAL-ADVTFLQGDFREEEVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 VVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSS 212
+ +K +KP +S
Sbjct: 184 DSFDVLKTVKPAAS 197
>gi|421868905|ref|ZP_16300549.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Burkholderia cenocepacia H111]
gi|358071041|emb|CCE51427.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Burkholderia cenocepacia H111]
Length = 220
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GA PGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+++ G+ ++++D LP+ PI V + DF + ++ +L
Sbjct: 62 WSQYARNKLAQGKKRDAEREGGIDGTIVALDILPMEPI-ADVHFLQGDFREDEVLHQLEE 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 VLEGRAVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRQLK 217
>gi|186475643|ref|YP_001857113.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia phymatum
STM815]
gi|226703288|sp|B2JFN9.1|RLME_BURP8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|184192102|gb|ACC70067.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia phymatum
STM815]
Length = 220
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 118/209 (56%), Gaps = 5/209 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ-VAVK 81
WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGSWSQ V K
Sbjct: 10 WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYVRNK 69
Query: 82 LVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
L D+++ G+ ++++D LP+ PI V + DF + ++ +L ++ D +D
Sbjct: 70 LSQGKHRDAQREGGIDGTIIALDLLPMEPI-ADVHFIQGDFREDNVLAQLEEVVGDRDVD 128
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+ D I + + FA + KP L+K + G Q+ E
Sbjct: 129 LVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFK 188
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ V KP +SR S+E F+LGR K
Sbjct: 189 HQFKTVAARKPKASRDKSSETFILGRHLK 217
>gi|407893861|ref|ZP_11152891.1| 23S rRNA methyltransferase J [Diplorickettsia massiliensis 20B]
Length = 208
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 116/212 (54%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK+ F DP+V++A++E R RSA+KLLE+ K K ++PG+ V+D GAAPG W
Sbjct: 3 RSKSSARWLKQHFNDPFVKRAQQEGLRSRSAYKLLELQEKYKLIKPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV + V G K L + +P P V + DF + + L+ + +
Sbjct: 63 SQVVTRFVGKLG------KVYALDILAMPGLP---DVDFLQGDFREESVLHALLARIPEQ 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K D++LSDMAPN +G R +D LA V+ F KP LIK + G +
Sbjct: 114 KADLILSDMAPNLSGNRSIDQPRAMYLAELVLDFGQRVLKPKGVLLIKAFQGAGFEAYLQ 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + V I KP +SR SAE++L+ RG++
Sbjct: 174 LLRQNFQSVSIRKPTASRQGSAEVYLIARGYR 205
>gi|148244491|ref|YP_001219185.1| cell division protein methyltransferase FtsJ [Candidatus
Vesicomyosocius okutanii HA]
gi|158514271|sp|A5CX75.1|RLME_VESOH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|146326318|dbj|BAF61461.1| cell division protein methyltransferase FtsJ [Candidatus
Vesicomyosocius okutanii HA]
Length = 210
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 118/212 (55%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS W++ D +V+ AKK YR R+ +KL+E+ +K KF++PG KV+D GAAPGSW
Sbjct: 3 KKDSSRRWMREHINDKFVKNAKKAGYRSRAVYKLIEVINKEKFIKPGNKVIDLGAAPGSW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+A+K V G V++ D L I PIDG L + DFT+ + + L+ + +
Sbjct: 63 SQMAIKAVGKSGQ--------VIANDILNIKPIDGIDFL-QGDFTENSVYEALLNLTMNQ 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K++VVLSD+APN +G +D L + A+ P +K++ G E
Sbjct: 114 KVNVVLSDIAPNISGQPSVDIPKSMYLCELALDIAIKSLTPSGYFFVKVFQGDGFDMFVE 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
S ++S V I KP +SR+ S E++LL K
Sbjct: 174 SCRTYFSYVTIHKPKASRTRSKEVYLLANKLK 205
>gi|309782468|ref|ZP_07677192.1| ribosomal RNA large subunit methyltransferase J [Ralstonia sp.
5_7_47FAA]
gi|404396297|ref|ZP_10988092.1| ribosomal RNA large subunit methyltransferase E [Ralstonia sp.
5_2_56FAA]
gi|308918805|gb|EFP64478.1| ribosomal RNA large subunit methyltransferase J [Ralstonia sp.
5_7_47FAA]
gi|348614786|gb|EGY64325.1| ribosomal RNA large subunit methyltransferase E [Ralstonia sp.
5_2_56FAA]
Length = 221
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 121/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 2 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 61
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL S + G ++++D LP+ I V + DF + D+ +L I+
Sbjct: 62 WSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEAI-ADVTFIQGDFREDDVFRQLEEIVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
+ K+D+VLSDMAPN +G+ D + +A + FA+ + KP LIK + G
Sbjct: 121 EATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAMAHLKPEGALLIKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 181 YSQIVEMFKRHFKIVAPRKPKASRDKSSETFLLGRQLK 218
>gi|402566922|ref|YP_006616267.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Burkholderia cepacia GG4]
gi|402248119|gb|AFQ48573.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Burkholderia cepacia GG4]
Length = 220
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 120/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GA PGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+++ G+ ++++D LP+ PI V + DF + + +L
Sbjct: 62 WSQYARNKLAQGKKRDAEREGGIDGTIVALDILPMEPI-ADVHFLQGDFREDTVLHQLEE 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 VLEGRSVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKTVAPRKPKASRDKSSETFILGRHLK 217
>gi|421537753|ref|ZP_15983936.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 93003]
gi|402318420|gb|EJU53943.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 93003]
Length = 206
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL S G V ++D LP+ I G V + DF + D+ + +L +
Sbjct: 64 SQVAAKLTGS--------SGAVFALDILPMEAI-GGVSFIQGDFRENDVLAQFEGLLNNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|241663317|ref|YP_002981677.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12D]
gi|240865344|gb|ACS63005.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12D]
Length = 221
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 121/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 2 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 61
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL S + G ++++D LP+ I V + DF + D+ +L I+
Sbjct: 62 WSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEAI-ADVTFIQGDFREDDVFRQLEEIVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
+ K+D+VLSDMAPN +G+ D + +A + FA+ + KP LIK + G
Sbjct: 121 EATGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAMAHLKPEGALLIKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 181 YSQIVEMFKRHFRIVAPRKPKASRDKSSETFLLGRQLK 218
>gi|333984953|ref|YP_004514163.1| ribosomal RNA large subunit methyltransferase E [Methylomonas
methanica MC09]
gi|333808994|gb|AEG01664.1| Ribosomal RNA large subunit methyltransferase E [Methylomonas
methanica MC09]
Length = 205
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 121/209 (57%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SSH W++ F D YV+KA+ YR R+ FKL+EI K K +RPG+ ++D GAAPG WS+
Sbjct: 6 SSHQWMQEHFQDEYVKKAQALGYRSRAVFKLIEIQEKDKLIRPGMNIVDLGAAPGGWSEY 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KL+ G + K V+++D L I PI G V + DF + ++ ++L +L +
Sbjct: 66 ARKLL---GKNDK-----VIALDLLDIEPIAG-VDFIQGDFREDEVLEKLYKVLDGQPVH 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
++LSDMAPN +G +EMD L + A + G LIK++ G + +
Sbjct: 117 LLLSDMAPNISGNKEMDQPRSIYLGELALDAANSILVKGGVFLIKMFQGAGFDEYYNQVR 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ ++ V I KP +SR+ S E+++L +GFK
Sbjct: 177 QRFTSVVIRKPKASRARSNEVYILAKGFK 205
>gi|88658179|ref|YP_507347.1| ribosomal RNA large subunit methyltransferase J [Ehrlichia
chaffeensis str. Arkansas]
gi|123493402|sp|Q2GGT6.1|RLME_EHRCR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|88599636|gb|ABD45105.1| ribosomal RNA large subunit methyltransferase J [Ehrlichia
chaffeensis str. Arkansas]
Length = 212
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL RQ DPYV AKK+ YR R+ FKL+E+DSK + G VLD G++PG WSQ
Sbjct: 2 SSTRWLHRQLNDPYVSLAKKQGYRSRATFKLIEMDSKFSIFKKGQYVLDLGSSPGGWSQF 61
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + V SH ++ + ++D +P V+ +CD DI+ L + K D
Sbjct: 62 AAQRV-SHNNNNPVFAVDIQNMDAIP------NVIFIQCDIIN-DIE-LLSDKFHNKKFD 112
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
V+LSDMAP A G +++DH I L + V +++ + KI G + +S+
Sbjct: 113 VILSDMAPKACGNKQVDHANIINLCEISLDIVVRFTRENGVFITKILQGEYEKEFYQSMK 172
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ VK KP +SR S+E++L+G GFK
Sbjct: 173 TYFQSVKYFKPKASRKDSSEMYLVGLGFK 201
>gi|99034839|ref|ZP_01314753.1| hypothetical protein Wendoof_01000429 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 192
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 110/202 (54%), Gaps = 20/202 (9%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D YVQK K+ YR RSA+KL+E+D+K K + G K++D GA+PG WSQVA
Sbjct: 3 DQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVA---------- 52
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI---LKDDKLDVVLSDMAP 146
Q V+++D P+ I+G +F Q DI + + KD K DV+LSDMAP
Sbjct: 53 -SQKGANVVALDIKPMNAINGV------EFIQCDIINEFEILREKFKDQKFDVILSDMAP 105
Query: 147 NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKI 206
+ G++ +DH I L A + FA + G ++KI+ G + + + + VK
Sbjct: 106 ESCGLKSLDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKY 165
Query: 207 LKPPSSRSHSAELFLLGRGFKG 228
KP SSRS S E++L+ GF G
Sbjct: 166 FKPKSSRSESTEMYLVSLGFIG 187
>gi|352104769|ref|ZP_08960522.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas sp. HAL1]
gi|350598691|gb|EHA14801.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas sp. HAL1]
Length = 227
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 126/224 (56%), Gaps = 13/224 (5%)
Query: 9 LKEVPKGKDHS----SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLK 64
+++ P + HS S+ W K F D YV+++ ++ YR R+++KL+E+D K K LRPG+
Sbjct: 13 MQQKPPSRKHSVSKTSNNWKKEHFDDQYVKQSWQDGYRSRASYKLIELDEKDKLLRPGMT 72
Query: 65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDI 124
V+D GAAPG WSQ+A + V P+G+V++ D L + + G V + DFT+ +
Sbjct: 73 VIDLGAAPGGWSQIAAERVG--------PEGVVIASDILEMDALAG-VDFIQGDFTEEAV 123
Query: 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184
+ ++ L + ++D+V+SDMAPN +GM +D L + A PG L K+
Sbjct: 124 LEAILKRLDNRRVDLVMSDMAPNMSGMAAIDQPQAMYLVELALELARETLSPGGRFLAKV 183
Query: 185 WDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ G + + +S+V KP +SR+ S E++ L GF+G
Sbjct: 184 FQGEGFDAYLKELRSSFSKVVTRKPDASRARSREVYFLAEGFRG 227
>gi|167625067|ref|YP_001675361.1| 23S rRNA methyltransferase J [Shewanella halifaxensis HAW-EB4]
gi|189040337|sp|B0TQB0.1|RLME_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|167355089|gb|ABZ77702.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella halifaxensis
HAW-EB4]
Length = 209
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 116/214 (54%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS W++ F D YV+ A+K R R+AFK+ EI K K +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSSRWMQEHFDDHYVKLAQKRGLRSRAAFKIEEIQEKDKLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVKL KG V++ D LP+ PI G L + DF + + D L+T +
Sbjct: 64 GWSQVAVKLAGD--------KGKVIACDILPMDPIVGVDFL-QGDFREEKVLDALLTRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 DAKVDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFDEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + VK KP SSR S E++L+ G+K
Sbjct: 175 MKAVKEAFKTVKTRKPDSSRPRSREVYLVATGYK 208
>gi|350646028|emb|CCD59305.1| cell division protein ftsj, putative [Schistosoma mansoni]
Length = 236
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 124/217 (57%), Gaps = 24/217 (11%)
Query: 35 KAKKENYRCRSAFKLLEIDSKIK--FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSK- 91
K +YRCRSAFKLL+++ KI +PG V+DCGAAPGSW QVA L N + ++
Sbjct: 12 KTCSSSYRCRSAFKLLQLNDKISGGIFKPGDIVVDCGAAPGSWCQVASSLTNCNNNNNNL 71
Query: 92 -----QPKGLVLSVDKLPIYPIDGAVV--------LSKC-DFTQPDIQDRLVTILKDDKL 137
Q KGLV++ D L P+ G + S+C + I +D +
Sbjct: 72 KASNNQNKGLVIAFDLLNFAPLPGVITHCGVDLNNWSECINLINQSISSHFNNNNNNDGV 131
Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
DVVLSD+APN GMRE+D + +LA ++R A++ SK GA +IK++ + + ++++
Sbjct: 132 DVVLSDIAPNVAGMREIDIPAMMKLAYNILRVAISVSKEGATFVIKLFQSQEAEEFKQTV 191
Query: 198 TRFY-------SQVKILKPPSSRSHSAELFLLGRGFK 227
++FY S + +KP +SR S+E++L+ RGF+
Sbjct: 192 SQFYTLNSKCPSFTRFIKPEASRKESSEIYLVARGFQ 228
>gi|350532312|ref|ZP_08911253.1| 23S rRNA methyltransferase J [Vibrio rotiferianus DAT722]
Length = 209
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K++ G +++ D LP+ PI G L + DF + D L+ ++ +D
Sbjct: 69 AAKIIGEEGQ--------IIACDLLPMDPIAGVSFL-QGDFRDEAVLDALLERIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQFVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDMFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|257095284|ref|YP_003168925.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047808|gb|ACV36996.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 206
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 117/212 (55%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS+ WL+ +D YVQ+A+ E YR R+A+KL+ ID LR G ++D GA+PG W
Sbjct: 3 RSASSNRWLREHVSDAYVQRARAEGYRSRAAYKLMAIDDTDHLLRSGDVIVDLGASPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA + + Q G V++VD L + P+ L + DF +PD+ RL TIL
Sbjct: 63 SQVAARRL--------QGGGRVIAVDLLEMEPLRDVTFL-QGDFREPDVIGRLETILAGK 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+ +VLSDM+PN +G+ D LA + FA + KP L+K++ G
Sbjct: 114 KVGLVLSDMSPNISGIAVCDQARGMHLAELGLEFACKWLKPEGAFLVKVFQGHGFDDFLA 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ + + V KP +SR S E++LLG+ K
Sbjct: 174 AMRKAFKSVASRKPDASRDRSPEIYLLGKTLK 205
>gi|53803869|ref|YP_114286.1| ribosomal RNA large subunit methyltransferase J [Methylococcus
capsulatus str. Bath]
gi|81681781|sp|Q607B2.1|RLME_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|53757630|gb|AAU91921.1| ribosomal RNA large subunit methyltransferase J [Methylococcus
capsulatus str. Bath]
Length = 210
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 116/213 (54%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL F+D YV+ A+++ YR R+ FKL+E+D + PG V+D GAAPG W
Sbjct: 4 RSRSSGRWLAEHFSDEYVRLAQEKGYRSRAVFKLMELDEHDRLFAPGTTVIDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ A + V + G VL++D LP+ P+ G V+ + DF + ++ +
Sbjct: 64 SQYAARRVGA--------SGRVLALDMLPMEPLPGVTVV-QGDFLDDAVFHAMLEAIGGR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++DVVLSDMAPN +G R +D LA A P ++K++ G +
Sbjct: 115 RVDVVLSDMAPNMSGNRNVDQPRSMYLAELAFDLAERVLGPKGSFVVKLFQGEGFQEYVA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V + KP +SR+ SAE++L+G+G++G
Sbjct: 175 RARKAFGSVGMRKPKASRARSAEIYLVGKGYRG 207
>gi|384084057|ref|ZP_09995232.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 219
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 122/217 (56%), Gaps = 16/217 (7%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ SS WLK F D +VQ+A KE YR R+A+KLLEI K + +RPG++VLD GAAPG
Sbjct: 2 ARSKSSEKWLKEHFRDVFVQRAMKEGYRSRAAYKLLEIQEKDRLIRPGMRVLDVGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W+QVA L+ +G +++VD+L + P+ V+ + +D ++ ++
Sbjct: 62 WTQVAAPLIGRNGR--------LVAVDRLAMDPVADVTVICGDVY-----EDAVIAACRE 108
Query: 135 ---DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
+ D+++SDMAPN +G+ +D LA + A + +PG LIK++ G
Sbjct: 109 ALPEGADLIMSDMAPNMSGIASVDQARAIDLAELALDMAQRWLRPGGSLLIKVFMGAGAE 168
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+L ++ + + ++ + KP +SR+ S E + L F+G
Sbjct: 169 ELRRALRKDFKKIVVRKPEASRARSTEQYWLALDFQG 205
>gi|302382743|ref|YP_003818566.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brevundimonas
subvibrioides ATCC 15264]
gi|302193371|gb|ADL00943.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brevundimonas
subvibrioides ATCC 15264]
Length = 224
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 123/217 (56%), Gaps = 13/217 (5%)
Query: 6 GPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
G K+K K K SS W+KRQ ADP+ +KA+ E +R R+AFK EID + ++ G +V
Sbjct: 16 GGKIKTAEK-KSISSIEWIKRQLADPWSEKARAEGWRSRAAFKFSEIDDRFHLVKRGSRV 74
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
+D GAAPG W QV V + G S V+ VD LPI PI G+ ++ + DFT P +
Sbjct: 75 IDLGAAPGGWVQVCV----NRGAAS------VVGVDLLPIEPIPGSTLI-QADFTDPGVD 123
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+L+ +L D+VLSDMA N G R+ DH I L FA+ +PG + K +
Sbjct: 124 QQLIDLLGGPP-DLVLSDMAHNTVGHRQTDHLKIIALIEVASDFAIRTLRPGGHFVTKNF 182
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLL 222
G + ++ + + +VK +KP +SR S+E++L+
Sbjct: 183 QGGDAGRVLAELRAAFQEVKYVKPAASRKGSSEVYLV 219
>gi|312379916|gb|EFR26060.1| hypothetical protein AND_08114 [Anopheles darlingi]
Length = 228
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 100/152 (65%), Gaps = 4/152 (2%)
Query: 77 QVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDK 136
+AVK N+ G +PKG+V+ VD L IY I+ + + DF + + QD+L L D +
Sbjct: 78 HIAVKQSNADGASVGKPKGMVIGVDLLQIYLIEPSTL----DFLRQETQDKLRATLGDRR 133
Query: 137 LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES 196
LD VLSDMAPNATG R +D + +T L +V+RFA+ S P A L+KIWD + P+LE+S
Sbjct: 134 LDCVLSDMAPNATGFRALDQENVTTLCYSVLRFALLMSSPKASLLMKIWDNGDVPKLEKS 193
Query: 197 ITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I +Y VK +KP +SR+ S+E F+L RGF+G
Sbjct: 194 INEYYDSVKRVKPRASRNDSSENFILARGFRG 225
>gi|258544935|ref|ZP_05705169.1| ribosomal RNA large subunit methyltransferase J [Cardiobacterium
hominis ATCC 15826]
gi|258519855|gb|EEV88714.1| ribosomal RNA large subunit methyltransferase J [Cardiobacterium
hominis ATCC 15826]
Length = 208
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 118/214 (55%), Gaps = 11/214 (5%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ +S WLK F D YVQKA++E YR R+ +KL+EI K + +RPG+ V++ GAAPG
Sbjct: 2 ARSKTSQRWLKEHFNDIYVQKAQQEGYRSRAVYKLMEIQEKDRLIRPGMVVVELGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-DGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ + + +G ++++D LP+ + D +L DF + + D L L
Sbjct: 62 WSQYVAQCLGG--------RGRMIALDILPMDALPDVTFILG--DFREQAVLDALYAELG 111
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D +++V+SDMAPN +G+R +D L + FA + G D L KI+ G L
Sbjct: 112 DSAVNLVISDMAPNTSGVRSVDQAKSMYLVELALDFAQSRLAAGGDFLTKIFHGPGFDTL 171
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
S+ + V+ KP +SR+ S E +LL RGFK
Sbjct: 172 LRSLKSQFLTVQTRKPEASRARSQETYLLARGFK 205
>gi|410861593|ref|YP_006976827.1| 23S rRNA methyltransferase J [Alteromonas macleodii AltDE1]
gi|410818855|gb|AFV85472.1| 23S rRNA methyltransferase J [Alteromonas macleodii AltDE1]
Length = 209
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 116/209 (55%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+ D YVQKA KE +R R+ +KL EI K K ++PG+ ++D GAAPG WSQ+
Sbjct: 9 SSKRWLQEHVNDHYVQKANKEGWRSRAIYKLEEIQKKDKLIKPGMTLVDLGAAPGGWSQL 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +LV +G V++ D LP+ PI G L + DF + + D L+ + + +D
Sbjct: 69 AAQLVGENGQ--------VIACDILPMDPIVGVDFL-QGDFREDAVLDALLNRIGGNTVD 119
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPN G +D L + KPG +IK++ G + ++
Sbjct: 120 IVLSDMAPNLAGNASVDQSRSMYLCELALDMCHQVLKPGGSFVIKVFQGEGFVEFMNALK 179
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ ++ +K KP SSRS S E++L+ G+K
Sbjct: 180 QSFTTIKTRKPDSSRSRSREVYLVACGYK 208
>gi|157962886|ref|YP_001502920.1| 23S rRNA methyltransferase J [Shewanella pealeana ATCC 700345]
gi|189040338|sp|A8H748.1|RLME_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|157847886|gb|ABV88385.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella pealeana ATCC
700345]
Length = 209
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 116/214 (54%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS W++ F D YV+ ++K R R+AFK+ EI K K +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSSRWMQEHFDDHYVKLSQKRGLRSRAAFKIEEIQEKDKLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ+AVKL KG V++ D LP+ PI G L + DF + + D L+T +
Sbjct: 64 GWSQIAVKLAGD--------KGKVIACDILPMDPIVGVDFL-QGDFREEKVLDALLTRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 DAKVDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + VK KP SSR S E++L+ G+K
Sbjct: 175 MKAVKEAFKTVKTRKPDSSRPRSREVYLVATGYK 208
>gi|260220960|emb|CBA29048.1| Ribosomal RNA large subunit methyltransferase J [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 205
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 112/199 (56%), Gaps = 1/199 (0%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
DPYV+ A KE YR R+A+KL EID + ++PG V+D G PG+WSQ + ++ G
Sbjct: 7 DPYVKLANKEGYRARAAYKLKEIDEALHLVKPGQLVVDLGCTPGAWSQYLRRRMSPQGAA 66
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT 149
+ G ++ +D LP+ PI+G V + DF + + +L L K D+V+SDMAPN +
Sbjct: 67 VGEMNGTIIGLDLLPMEPIEG-VTFIQGDFREVETLAKLEAALGGQKADLVVSDMAPNLS 125
Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
G+ D + L I FA + KP + K++ G + ++ + + + VK LKP
Sbjct: 126 GISSADAARVEYLVELAIEFAQNHMKPQGALVAKVFHGGSYNEVVQRFKQAFVTVKPLKP 185
Query: 210 PSSRSHSAELFLLGRGFKG 228
+SR S+E FL+G G KG
Sbjct: 186 KASRDRSSETFLIGLGLKG 204
>gi|42519983|ref|NP_965898.1| ribosomal RNA large subunit methyltransferase J [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|81652913|sp|Q73IS9.1|RLME_WOLPM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|42409720|gb|AAS13832.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia endosymbiont of Drosophila melanogaster]
Length = 192
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 110/202 (54%), Gaps = 20/202 (9%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D YVQK K+ YR RSA+KL+E+D+K K + G K++D GA+PG WSQVA
Sbjct: 3 DQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVA---------- 52
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI---LKDDKLDVVLSDMAP 146
Q V+++D P+ I+G +F Q DI + + KD K DV+LSDMAP
Sbjct: 53 -SQKGANVVALDIKPMNAINGV------EFIQCDIINEFEILREKFKDQKFDVILSDMAP 105
Query: 147 NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKI 206
+ G++ +DH I L A + FA + G ++KI+ G + + + + VK
Sbjct: 106 ESCGLKSLDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKY 165
Query: 207 LKPPSSRSHSAELFLLGRGFKG 228
KP SSRS S E++L+ GF G
Sbjct: 166 FKPKSSRSESTEMYLVSLGFIG 187
>gi|350571029|ref|ZP_08939368.1| ribosomal RNA large subunit methyltransferase J [Neisseria
wadsworthii 9715]
gi|349793592|gb|EGZ47423.1| ribosomal RNA large subunit methyltransferase J [Neisseria
wadsworthii 9715]
Length = 206
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV KA+K+ YR R+A+KLLEI+ K K ++ G + D G+APGSW
Sbjct: 4 RSKSSKAWLNEHVNDHYVHKAQKDGYRARAAYKLLEINEKDKLIKQGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL S G V ++D LP+ P++G V + DF + + ++L
Sbjct: 64 SQVAAKLAGS--------DGAVFALDILPMEPVEG-VSFIQGDFREEGVLQEFESLLGGR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNSVTDQARSYYLCELALDFARNHLKTGGCFLVKVFQGAGYQEFTA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
+ + V++ KP +SR+ S+E++LLG+
Sbjct: 175 QMREVFQSVQVRKPDASRNRSSEIYLLGK 203
>gi|340362198|ref|ZP_08684593.1| ribosomal RNA large subunit methyltransferase J [Neisseria macacae
ATCC 33926]
gi|339887725|gb|EGQ77253.1| ribosomal RNA large subunit methyltransferase J [Neisseria macacae
ATCC 33926]
Length = 206
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 116/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KLV + G V ++D LP+ I+G V + DF + ++ + T+L
Sbjct: 64 SQVAAKLVGN--------SGRVFALDILPMDEIEG-VSFIQGDFREDEVLAQFETLLDAR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAITDQARSFYLCELALDFAANHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|146182230|ref|XP_001024178.2| FtsJ-like methyltransferase family protein [Tetrahymena
thermophila]
gi|146143910|gb|EAS03933.2| FtsJ-like methyltransferase family protein [Tetrahymena thermophila
SB210]
Length = 604
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 24/221 (10%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K SS +W++ D YV+KA+K+NYR R+++KL+EI + K + G KVL+ G+APG
Sbjct: 33 SKTKSSKMWMQEHVTDEYVKKAQKDNYRSRASYKLIEIQERYKIFKQGQKVLELGSAPGG 92
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI--- 131
W+QVAV+ S+ + K VL++D+ + P+ GAV F Q DI D+ +
Sbjct: 93 WTQVAVEFTKSN-----EKKPTVLAIDRDFMDPVQGAV------FYQGDINDKKTQVYIP 141
Query: 132 --LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
K + +D+V+SDMAPN +G + DH LI L I K G ++K +G
Sbjct: 142 EFFKLEPVDIVISDMAPNFSGDLDQDHLLIQDLNNMTIDVCTKNLKIGGTVVMKTLNGT- 200
Query: 190 RPQLEESITRFY----SQVKILKPPSSRSHSAELFLLGRGF 226
LE+ + R Y + +KP +SR+ S+EL+ LG+G+
Sbjct: 201 ---LEKDVFRMYKIYFKEFLRVKPRASRARSSELYYLGKGY 238
>gi|167562362|ref|ZP_02355278.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
oklahomensis EO147]
gi|167574341|ref|ZP_02367215.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
oklahomensis C6786]
Length = 220
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 119/217 (54%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ PI V + DF + D+ +L
Sbjct: 62 WSQYARNKLAQGKRRDTVREGGIDGTIIALDMLPMEPI-ADVHFIQGDFREDDVLGQLEE 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 121 LLAGRPVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKHQFKMVAPRKPKASRDKSSETFILGRHLK 217
>gi|407070541|ref|ZP_11101379.1| 23S rRNA methyltransferase J [Vibrio cyclitrophicus ZF14]
Length = 209
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 120/213 (56%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI SK K L PG+ ++D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQSKDKLLSPGMTIVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K++ +G +++ D LP+ PI G L + DF + + D L+ ++ + +D
Sbjct: 69 AAKIIGDNGQ--------IIACDLLPMDPIAGVSFL-QGDFREEAVLDALLERIQPNMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + + ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLATN---GSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VK+ KP SSR+ S E+F++ G+KG
Sbjct: 177 DVREMFKTVKVRKPDSSRARSREVFIVATGYKG 209
>gi|254468491|ref|ZP_05081897.1| ribosomal RNA large subunit methyltransferase J [beta
proteobacterium KB13]
gi|207087301|gb|EDZ64584.1| ribosomal RNA large subunit methyltransferase J [beta
proteobacterium KB13]
Length = 205
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 120/201 (59%), Gaps = 9/201 (4%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
W+K +D +V++A+K+ +R R+A+K +E++ K +RP +++D G+APGSWSQ A L
Sbjct: 10 WIKEHLSDEFVKRAQKDGFRSRAAYKFIEMNDKYHLIRPNDRIVDLGSAPGSWSQAASSL 69
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++++G + ++D LP+ + + + DF + I +L +L++ +D+V+S
Sbjct: 70 ISNNGK--------IFAIDLLPMDDVKNTTFI-QGDFRELSILQKLEELLENTAVDLVIS 120
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G++ D +I L ++FA + KP ++K + G + + + ++
Sbjct: 121 DMAPNISGIKSRDQAMINDLNDLSLKFASDWLKPKGHFMVKTFMGSGFEEYVKKLRSLFN 180
Query: 203 QVKILKPPSSRSHSAELFLLG 223
+VKI KP SSR SAE FL+G
Sbjct: 181 KVKIEKPDSSRDRSAEFFLIG 201
>gi|334139955|ref|YP_004533155.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium sp.
PP1Y]
gi|359398875|ref|ZP_09191890.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium
pentaromativorans US6-1]
gi|333937979|emb|CCA91337.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium sp.
PP1Y]
gi|357599818|gb|EHJ61522.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Novosphingobium
pentaromativorans US6-1]
Length = 219
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 121/223 (54%), Gaps = 12/223 (5%)
Query: 6 GPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
G KL+ K + SS WL+RQ DPYV+KAK + YR R+A+KL+E+D K + +
Sbjct: 9 GEKLRTAKK-RSTSSARWLQRQLNDPYVKKAKADGYRSRAAYKLIELDEKFGLFKGVTRA 67
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
+D G APG WSQV ++L K P+ V+ +D LP PI+G V + + DF +
Sbjct: 68 VDLGIAPGGWSQV-LRL--------KCPRAKVVGIDLLPTDPIEG-VTIFEMDFMADEAP 117
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L L D ++VLSDMA N G ++ DH L FA+ PG + K+
Sbjct: 118 AALEGAL-DGAPELVLSDMAANTVGHKQTDHLRTMGLVETAADFAIQTLAPGGTFVAKVL 176
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
G +L + R ++ VK KPP+SR S+E +++ +GFKG
Sbjct: 177 AGGTDTELLNLLKRHFTSVKHAKPPASRKDSSEWYVIAKGFKG 219
>gi|443712784|gb|ELU05937.1| hypothetical protein CAPTEDRAFT_142835, partial [Capitella teleta]
Length = 163
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
Query: 70 AAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV 129
AAPGSWSQVAV VNS G D P G V+ +D + P++GA +L + DFT + Q L+
Sbjct: 1 AAPGSWSQVAVHRVNSLGKDPG-PTGSVIGIDLQHMMPVEGATMLHQSDFTSHETQKSLL 59
Query: 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
T+L K D+V+SDMAPN G++ +DH I +L + ++FA + L K+W+G
Sbjct: 60 TMLDGSKADLVMSDMAPNPVGVKTVDHTAIVKLCKSALKFAANVLQLNGTFLCKLWEGNE 119
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R LE+ + + QV+++KP +SRS SAE+FLL + FKG
Sbjct: 120 RNDLEKLMRIVFKQVRVVKPLASRSDSAEIFLLAKHFKG 158
>gi|410635152|ref|ZP_11345770.1| ribosomal RNA large subunit methyltransferase E [Glaciecola
lipolytica E3]
gi|410145339|dbj|GAC12975.1| ribosomal RNA large subunit methyltransferase E [Glaciecola
lipolytica E3]
Length = 206
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 120/213 (56%), Gaps = 9/213 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ +S WL DPYV+KA+ + YR R+++KL+EI+ K K +RPG V+D G+APG
Sbjct: 2 ARSKTSKKWLDEHVNDPYVKKAQVDGYRSRASYKLIEINEKDKLIRPGNIVMDLGSAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQ+ +V KG V++ D LP+ I V + DFT+ + D++V L +
Sbjct: 62 WSQIVAPMVGK--------KGRVIASDILPMDSIID-VTFIQGDFTEESVYDQIVAELDN 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+K+DVV+SDMAPN +G+ D L + A KPG + K++ G +
Sbjct: 113 EKVDVVVSDMAPNISGVNATDQYSSMYLVELALDMARNVLKPGGNFCAKVFQGVGYEEYL 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + +++V I KP +SR S E++++ +GFK
Sbjct: 173 KDVRSSFNKVVIRKPDASRPRSREVYIVAKGFK 205
>gi|319786408|ref|YP_004145883.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudoxanthomonas
suwonensis 11-1]
gi|317464920|gb|ADV26652.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudoxanthomonas
suwonensis 11-1]
Length = 227
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 116/203 (57%), Gaps = 9/203 (4%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL+ F+DPYV+KA+ E R R+A+KL E+ + + L+PG+ V+D GAAPG WSQ +
Sbjct: 28 WLREHFSDPYVKKAQAEGLRSRAAYKLEELLERDRLLKPGMAVVDLGAAPGGWSQYVRQA 87
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
+ G V+++D L + P+ G L DF + D+ +L ++L +D+VLS
Sbjct: 88 LGDSGR--------VIALDILEMPPLAGVEFL-HGDFREDDVLSQLESLLDGQPVDLVLS 138
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ +D LA + FA + +PG LIK++ G + + R Y
Sbjct: 139 DMAPNMSGVDAVDQPRAMYLAELAMEFADNHLRPGGAFLIKLFQGVGFDEYVRQLRRRYE 198
Query: 203 QVKILKPPSSRSHSAELFLLGRG 225
+V I KP +SR S E++ LG+G
Sbjct: 199 KVAIRKPAASRKRSPEVYALGQG 221
>gi|313668721|ref|YP_004049005.1| cell division protein [Neisseria lactamica 020-06]
gi|421863048|ref|ZP_16294749.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379377|emb|CBX21944.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006183|emb|CBN87645.1| putative cell division protein [Neisseria lactamica 020-06]
Length = 206
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL + G V ++D LP+ ++G V + DF + D+ + +L +
Sbjct: 64 SQVAAKLTGT--------SGAVFALDILPMEAVNG-VSFIQGDFRENDVLAQFEGLLNNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|330816267|ref|YP_004359972.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia gladioli
BSR3]
gi|327368660|gb|AEA60016.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia gladioli
BSR3]
Length = 220
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDDQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVAV-KLVNSHGYDSKQP---KGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL DS++ G+++++D LP+ PI V + DF + ++ +L
Sbjct: 62 WSQYARNKLAQGKQRDSQREGGIDGIIIALDMLPMEPI-ADVHFIQGDFREDEVLRQLED 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I + + F+ + KP L+K + G
Sbjct: 121 VLEGRAVDLVISDMAPNLSGVALADAARIEHVCDLALEFSQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKHQFRTVAPRKPKASRDKSSETFILGRHLK 217
>gi|60417326|emb|CAI51686.1| putative ribosomal RNA methyltransferase 2 [Nyctotherus ovalis]
Length = 202
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 121/207 (58%), Gaps = 6/207 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
+S W++R D +V+ +++ NYR R+AFKL++IDSK ++PG++V++ G+APGSW+QV
Sbjct: 2 ASRQWMRRHVRDTFVKASRQMNYRSRAAFKLIDIDSKHGLMKPGMRVVEIGSAPGSWTQV 61
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
V+ V S S P V++VD L + P+ GAV + + + + L +K
Sbjct: 62 IVRQVRS---TSASP--TVVAVDVLKMKPVSGAVFVEGSILAR-KTHEEIERALGGEKAG 115
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V SD AP G + D + QL AV+ AV Y K G + L+K+ G +++ I
Sbjct: 116 LVCSDAAPEFVGEGDADQEATIQLNYAVLNSAVKYLKNGGNFLMKVMQGWIEKEMKVEIK 175
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRG 225
R + + +KPP+SR+ S E+++L +G
Sbjct: 176 RHFDSLSYVKPPASRADSREIYILAKG 202
>gi|268598561|ref|ZP_06132728.1| cell division protein FtsJ [Neisseria gonorrhoeae MS11]
gi|268582692|gb|EEZ47368.1| cell division protein FtsJ [Neisseria gonorrhoeae MS11]
Length = 206
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+ +KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHINDHYVHMAQKDGYRARATYKLLEINEKDKIIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL + G V ++D LP+ I G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLTGT--------SGTVFALDILPMEAI-GGVSFIQGDFRENDVLAQFETLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|406596690|ref|YP_006747820.1| 23S rRNA methyltransferase J [Alteromonas macleodii ATCC 27126]
gi|407683647|ref|YP_006798821.1| 23S rRNA methyltransferase J [Alteromonas macleodii str. 'English
Channel 673']
gi|407687631|ref|YP_006802804.1| 23S rRNA methyltransferase J [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407699955|ref|YP_006824742.1| 23S rRNA methyltransferase J [Alteromonas macleodii str. 'Black Sea
11']
gi|406374011|gb|AFS37266.1| 23S rRNA methyltransferase J [Alteromonas macleodii ATCC 27126]
gi|407245258|gb|AFT74444.1| 23S rRNA methyltransferase J [Alteromonas macleodii str. 'English
Channel 673']
gi|407249102|gb|AFT78287.1| 23S rRNA methyltransferase J [Alteromonas macleodii str. 'Black Sea
11']
gi|407291011|gb|AFT95323.1| 23S rRNA methyltransferase J [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 209
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 116/209 (55%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+ D YVQKA KE +R R+ +KL EI K K ++PG+ ++D GAAPG WSQ+
Sbjct: 9 SSKRWLQEHVNDHYVQKANKEGWRSRAIYKLEEIQKKDKLIKPGMTLVDLGAAPGGWSQL 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +LV +G V++ D LP+ PI G L + DF + + D L+ + + +D
Sbjct: 69 AAQLVGDNGQ--------VIACDILPMDPIVGVDFL-QGDFREDAVLDALLNRIGGNTVD 119
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPN G +D L + KPG +IK++ G + ++
Sbjct: 120 IVLSDMAPNLAGNASVDQSRSMYLCELALDMCHQVLKPGGSFVIKVFQGEGFVEFMNALK 179
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ ++ +K KP SSRS S E++L+ G+K
Sbjct: 180 QSFTTIKTRKPDSSRSRSREVYLVACGYK 208
>gi|421554562|ref|ZP_16000503.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 98008]
gi|402332522|gb|EJU67847.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 98008]
Length = 206
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINDKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL + G V ++D LP+ I G V + DF + D+ + T+L +
Sbjct: 64 SQVAAKLTGT--------SGAVFALDILPMEAI-GGVSFIQGDFRENDVLAQFETLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQDYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|285017954|ref|YP_003375665.1| cell division protein ftsj (rrna (uridine) methyltransferase
activity ) [Xanthomonas albilineans GPE PC73]
gi|283473172|emb|CBA15678.1| probable cell division protein ftsj (rrna (uridine)
methyltransferase activity ) [Xanthomonas albilineans
GPE PC73]
Length = 219
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ FADP+V+KA+ E R R+A+KL E+ + + L+P + V+D GAAPG W
Sbjct: 13 RSKSSQRWLREHFADPFVKKAQAEGMRSRAAYKLEELLQRDRLLKPDMVVVDLGAAPGGW 72
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K S +G VL++D L + P+ G L DF + + +L +L +
Sbjct: 73 SQQVRK--------SMGDRGRVLALDILEMPPLAGVEFLH-GDFREEAVLSQLEAMLGET 123
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GM +D + LA + FA ++ KP LIK++ G
Sbjct: 124 AVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMAFADSHLKPNGVFLIKLFQGVGFDDYIR 183
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
++ R Y +V I KP +SR S E++ LG+G
Sbjct: 184 AMRRRYEKVTIRKPAASRKRSPEVYALGQG 213
>gi|333368156|ref|ZP_08460370.1| ribosomal RNA large subunit methyltransferase J [Psychrobacter sp.
1501(2011)]
gi|332977760|gb|EGK14520.1| ribosomal RNA large subunit methyltransferase J [Psychrobacter sp.
1501(2011)]
Length = 210
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 120/202 (59%), Gaps = 9/202 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W+K D YVQ A+KE YR R+A+KLLEI+ K ++ G+ V+D G+APGSWSQV
Sbjct: 13 SSKAWMKEHLDDHYVQLAQKEGYRARAAYKLLEINEKTNLIKKGMTVVDLGSAPGSWSQV 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +LV +G++++ D LP+ ++ V + DF + ++ D+L+ + D ++D
Sbjct: 73 AGRLVGD--------EGILIASDILPMDALEN-VTFIQGDFREEEVFDKLMGEVGDRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMAPN +G +D + L + FA+ G ++K++ G QL + +
Sbjct: 124 VVLSDMAPNTSGHTAVDQPRMIYLCELAVDFALRVLPKGGSLVMKMFQGEGEQQLRQQLQ 183
Query: 199 RFYSQVKILKPPSSRSHSAELF 220
+S+V+ +KP +SR S E+F
Sbjct: 184 SQFSKVRTIKPAASRPRSKEVF 205
>gi|416178625|ref|ZP_11610653.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M6190]
gi|416192632|ref|ZP_11616738.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis ES14902]
gi|433492302|ref|ZP_20449396.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM586]
gi|433496563|ref|ZP_20453604.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
M7089]
gi|433498623|ref|ZP_20455632.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
M7124]
gi|433500591|ref|ZP_20457577.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM174]
gi|433502832|ref|ZP_20459797.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM126]
gi|325131968|gb|EGC54667.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M6190]
gi|325137799|gb|EGC60374.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis ES14902]
gi|432229091|gb|ELK84784.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM586]
gi|432234457|gb|ELK90077.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
M7124]
gi|432235263|gb|ELK90879.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
M7089]
gi|432235882|gb|ELK91491.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM174]
gi|432240928|gb|ELK96459.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM126]
Length = 206
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KL + G V ++D LP+ I G V + DF + D+ + +L +
Sbjct: 64 SQVAAKLTGT--------SGAVFALDILPMEAI-GGVSFIQGDFRENDVLAQFEGLLNNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVSDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFGTVQTRKPEASRNRSSEIYLLGK 203
>gi|24372779|ref|NP_716821.1| 23S rRNA (uridine2552-2'-O)-methyltransferase RrmJ [Shewanella
oneidensis MR-1]
gi|81462880|sp|Q8EHM3.1|RLME_SHEON RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|24346860|gb|AAN54266.1| 23S rRNA (uridine2552-2'-O)-methyltransferase RrmJ [Shewanella
oneidensis MR-1]
Length = 209
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 118/214 (55%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS+ W+ F D YV+ A+K R R+AFKL E+ K + +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVKLV KG V++ D LP+ PI G L + DF + + + L+T +
Sbjct: 64 GWSQVAVKLVGD--------KGKVIACDILPMDPIVGVDFL-QGDFREEKVLEALLTRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DK+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 ADKVDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + VK KP SSR+ S E++L+ G+K
Sbjct: 175 MKAVKEAFKVVKTRKPDSSRARSREVYLVATGYK 208
>gi|110833182|ref|YP_692041.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax
borkumensis SK2]
gi|123345833|sp|Q0VSS9.1|RLME_ALCBS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|110646293|emb|CAL15769.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax
borkumensis SK2]
Length = 208
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 117/212 (55%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DP+V KA+++ YR R++FKLLE++ K + RPG+ VLD GAAPG W
Sbjct: 6 RSKTSKAWLKEHFNDPWVAKAQEQGYRSRASFKLLEMNEKDRLFRPGMAVLDLGAAPGGW 65
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +L+ G +L++D LP V + DF + I ++++ L D
Sbjct: 66 SQVAGQLIGGRGTVIASD---ILAMDALP------DVTFIEGDFREEVIYEQILMALGDQ 116
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+V+SDMAPN +G +D LA + A +P L+K++ G +
Sbjct: 117 RADLVMSDMAPNMSGNSAVDQPRAMYLAELALDMAERVLEPDGVFLVKVFQGEGFEDYRK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ + +V KP +SR+ S E++ LG G K
Sbjct: 177 ALQSRFKRVVSRKPAASRARSTEVYQLGFGLK 208
>gi|383317099|ref|YP_005377941.1| 23S rRNA methylase [Frateuria aurantia DSM 6220]
gi|379044203|gb|AFC86259.1| 23S rRNA methylase [Frateuria aurantia DSM 6220]
Length = 228
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 123/216 (56%), Gaps = 11/216 (5%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
+P+ K SS WL+ F D YV+KA+ E YR R+ FKL E+ + + L+PG++++D GAA
Sbjct: 13 MPRSK--SSSRWLREHFDDVYVKKAQAEGYRSRAVFKLDELIERDRLLKPGMRIVDLGAA 70
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
PG WSQ+ + + +G V+++D LP+ + G V + DF +P++ L
Sbjct: 71 PGGWSQLVRQRLGDNGT--------VVALDILPMQGLAG-VDFIQGDFREPEVLSALEAQ 121
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L KLD+VLSDMAPN +G+ D LA ++F+ + KPG LIK++ G
Sbjct: 122 LNGQKLDLVLSDMAPNMSGVALADQIRAMDLAELALQFSQDWLKPGGSLLIKLFQGAGFD 181
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
S+ +++V + KP +SR+ S E + L GF+
Sbjct: 182 DYLRSLRASFTRVTMRKPKASRARSRETYALAVGFR 217
>gi|417956688|ref|ZP_12599640.1| ribosomal RNA large subunit methyltransferase J [Neisseria weaveri
ATCC 51223]
gi|343970335|gb|EGV38513.1| ribosomal RNA large subunit methyltransferase J [Neisseria weaveri
ATCC 51223]
Length = 206
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 118/209 (56%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLNEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTILADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KLV +G V ++D LP+ I+G V + DF + + ++ ++L +
Sbjct: 64 SQVAAKLVGKNGQ--------VFALDILPMDDIEG-VSFIQGDFREEQVLNQFESLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G + L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVTDQARSFYLCELALDFASEHLKTGGNFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREVFVTVQTRKPEASRNRSSEIYLLGK 203
>gi|345875872|ref|ZP_08827659.1| ribosomal RNA large subunit methyltransferase J [Neisseria weaveri
LMG 5135]
gi|343968169|gb|EGV36401.1| ribosomal RNA large subunit methyltransferase J [Neisseria weaveri
LMG 5135]
Length = 206
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 118/209 (56%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLNEHVNDHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTILADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KLV +G V ++D LP+ I+G V + DF + + ++ ++L +
Sbjct: 64 SQVAAKLVGKNGQ--------VFALDILPMDDIEG-VSFIQGDFREEQVLNQFESLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G + L+K++ G +
Sbjct: 115 LLDLVICDMAPNMSGNAVTDQARSFYLCELALDFASEHLKTGGNFLVKVFQGAGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREVFVTVQTRKPEASRNRSSEIYLLGK 203
>gi|448747661|ref|ZP_21729317.1| Ribosomal RNA large subunit methyltransferase E [Halomonas
titanicae BH1]
gi|445564773|gb|ELY20889.1| Ribosomal RNA large subunit methyltransferase E [Halomonas
titanicae BH1]
Length = 227
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 13/224 (5%)
Query: 9 LKEVPKGKDHS----SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLK 64
+++ P + HS S+ W K F D YV+++ ++ YR R+++KL+E+D K K LRPG+
Sbjct: 13 MQQKPPNRKHSVSKTSNNWKKEHFDDQYVKQSWQDGYRSRASYKLIELDEKDKLLRPGMT 72
Query: 65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDI 124
V+D GAAPG WSQ+A + V P+G+V++ D L + + G V + DFT+ +
Sbjct: 73 VIDLGAAPGGWSQIAAERVG--------PEGVVIASDILEMDALAG-VDFIQGDFTEEAV 123
Query: 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184
+ ++ L + ++D+V+SDMAPN +GM +D L + A PG L K+
Sbjct: 124 LEAILKCLDNRRVDLVMSDMAPNMSGMAAIDQPQAMYLVELALELARETLSPGGRFLAKV 183
Query: 185 WDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ G + + +++V KP +SR+ S E++ L GF+G
Sbjct: 184 FQGEGFDAYLKELRGSFNKVVTRKPDASRARSREVYFLAEGFRG 227
>gi|421746493|ref|ZP_16184283.1| 23S rRNA methyltransferase J [Cupriavidus necator HPC(L)]
gi|409774969|gb|EKN56521.1| 23S rRNA methyltransferase J [Cupriavidus necator HPC(L)]
Length = 221
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 117/210 (55%), Gaps = 6/210 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ-VAVK 81
WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGSWSQ V K
Sbjct: 10 WLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIQPGQVIVDLGAAPGSWSQYVRNK 69
Query: 82 LVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD----DKL 137
L S G V+++D LP+ P+ V + DF ++ +L TI+ + +K+
Sbjct: 70 LAASPRAREGHIDGAVVAIDLLPMEPV-ADVTFIQGDFRDEEVFRQLETIVLEASGGNKI 128
Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
D+VLSDMAPN +G+ D I L + FA + KP L+K + G Q+ E
Sbjct: 129 DLVLSDMAPNLSGVASADAARIEYLCDLALEFAQAHLKPDGALLVKCFHGSGYSQIVEKF 188
Query: 198 TRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
R + V KP +SR S+E F+LGR K
Sbjct: 189 KRQFKVVAKRKPKASRDKSSETFILGRHLK 218
>gi|323497766|ref|ZP_08102780.1| 23S rRNA methyltransferase J [Vibrio sinaloensis DSM 21326]
gi|323317113|gb|EGA70110.1| 23S rRNA methyltransferase J [Vibrio sinaloensis DSM 21326]
Length = 209
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K++ G +++ D LP+ PI G L + DF + + + L+ ++ +D
Sbjct: 69 AAKIIGEDGQ--------IIACDLLPMDPIAGVSFL-QGDFREDAVLEALLERIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQFVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EIRDTFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|357417784|ref|YP_004930804.1| cell division protein FtsJ [Pseudoxanthomonas spadix BD-a59]
gi|355335362|gb|AER56763.1| cell division protein FtsJ [Pseudoxanthomonas spadix BD-a59]
Length = 210
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 117/210 (55%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK FADPYV++A+ E R R+A+KL E+ + + L+PG+ V+D GAAPG W
Sbjct: 4 RSQSSQRWLKEHFADPYVKRAQAEGLRSRAAYKLEELIERDRLLKPGMVVVDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ + + G V+++D L + + G L DF + + RL +L+
Sbjct: 64 SQYVRQAMGGQGR--------VVAMDILEMPSLAGVDFLH-GDFREQVVLSRLEAMLEGR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+VLSDMAPN +G+ +D + LA I FA + KPG LIK++ G
Sbjct: 115 QADLVLSDMAPNKSGVDAVDQPRMMHLAELAIDFADGHLKPGGAFLIKLFQGVGFDDYIR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E++ LG+G
Sbjct: 175 DMRRRYERVVIRKPDASRKRSPEVYALGQG 204
>gi|410665450|ref|YP_006917821.1| ribosomal RNA large subunit methyltransferase J [Simiduia
agarivorans SA1 = DSM 21679]
gi|409027807|gb|AFV00092.1| ribosomal RNA large subunit methyltransferase J [Simiduia
agarivorans SA1 = DSM 21679]
Length = 207
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 119/214 (55%), Gaps = 9/214 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ SS+ WL+ DPYV++A+ + YR R+++KLLE++ K K RP V+D G+APG
Sbjct: 2 ARSKSSNRWLEEHVNDPYVKRAQVDGYRSRASYKLLELNEKDKLFRPHQVVMDLGSAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQVA+KLV HG V++ D LP+ I V + DFT+ + D+++ +
Sbjct: 62 WSQVAMKLVGEHGR--------VIASDILPMDAI-AQVEFIQGDFTEDKVFDQIMATINS 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
D +DVV+SDMAPN +G+ D L + A + + K++ G
Sbjct: 113 DAVDVVISDMAPNISGVNAADQASSMYLVELALDMARQVLRKKGSFVAKVFMGEGYDDYL 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + +V I KP +SR+ S E++++ +GFKG
Sbjct: 173 KDVRESFDKVVIRKPAASRARSREVYVVAKGFKG 206
>gi|241758799|ref|ZP_04756912.1| ribosomal RNA large subunit methyltransferase J [Neisseria
flavescens SK114]
gi|241321007|gb|EER57220.1| ribosomal RNA large subunit methyltransferase J [Neisseria
flavescens SK114]
Length = 206
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 116/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KLV G V ++D LP+ I+G V + DF + + ++ +L +
Sbjct: 64 SQVAAKLVG--------KTGAVFALDILPMDAIEG-VSFIQGDFREDAVLEQFEALLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVTDQARSFYLCELALDFAFQHLKTGGSFLVKVFQGAGYQEYTA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ ++ V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFASVQTRKPDASRNRSSEIYLLGK 203
>gi|312884009|ref|ZP_07743726.1| 23S rRNA methyltransferase J [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368467|gb|EFP96002.1| 23S rRNA methyltransferase J [Vibrio caribbenthicus ATCC BAA-2122]
Length = 209
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 117/213 (54%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+P + V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQNKDKLLKPNMTVVDLGAAPGGWSQF 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V KG +++ D LP+ PI G L + DF + D L+ + + +D
Sbjct: 69 AAKIVGE--------KGQIIACDLLPMDPISGVSFL-QGDFRDEAVLDALLERISPEMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDNFVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VK+ KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRELFKVVKVRKPDSSRARSREVFIVATGYKG 209
>gi|347737999|ref|ZP_08869646.1| Ribosomal RNA large subunit methyltransferase E [Azospirillum
amazonense Y2]
gi|346919062|gb|EGY00760.1| Ribosomal RNA large subunit methyltransferase E [Azospirillum
amazonense Y2]
Length = 246
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 120/210 (57%), Gaps = 11/210 (5%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+RQ DPYV +AKK YR R+AFKLL++D K L+PG +V+D GAAPG W+QV
Sbjct: 34 SSARWLERQLNDPYVAEAKKRGYRSRAAFKLLQLDEKYHLLKPGTRVVDLGAAPGGWTQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ V V+ +D L + + GA+ + + DF P+ D+L L D
Sbjct: 94 AVEKVRG---------AKVVGLDILGMEDVPGAITM-QMDFLLPEAPDQLKAAL-GGPAD 142
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG + DH I LA A FA PG + K++ G L + +
Sbjct: 143 VVLSDMAAPTTGHPKTDHLRIMALADAAYAFAAEVLAPGGAFVAKLFQGGAERSLLDLLK 202
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ V+ KPP+SR+ S+E +++ GF+G
Sbjct: 203 RDFAVVRHAKPPASRADSSETYVVATGFRG 232
>gi|448730693|ref|ZP_21712998.1| 23S rRNA methyltransferase J [Halococcus saccharolyticus DSM 5350]
gi|445793134|gb|EMA43724.1| 23S rRNA methyltransferase J [Halococcus saccharolyticus DSM 5350]
Length = 251
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 109/196 (55%), Gaps = 12/196 (6%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D Y KAK++ YR RSA+KL ++D + G V+D GAAPG W QVA +
Sbjct: 5 DEYYNKAKQQGYRSRSAYKLQQLDDTADLIASGDTVIDLGAAPGGWLQVAAE-------- 56
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT 149
+ G V+ VD+ I IDG V + D T+ D Q L + + D+VLSDMAPN T
Sbjct: 57 -RTDDGRVVGVDRQRIESIDG-VETVRGDLTEDDTQAELAERVG--EADLVLSDMAPNMT 112
Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
G ++DH LA + A T PG D ++K++DGR+ LE I + V+ ++P
Sbjct: 113 GEYDLDHARSVHLARQALDVARTVLAPGGDLVVKVFDGRDLDDLEADIEDEFEYVRTVRP 172
Query: 210 PSSRSHSAELFLLGRG 225
+SR S+EL+L+G+G
Sbjct: 173 EASRDESSELYLVGKG 188
>gi|390575962|ref|ZP_10256042.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia terrae
BS001]
gi|389932103|gb|EIM94151.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia terrae
BS001]
Length = 220
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 119/209 (56%), Gaps = 5/209 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ-VAVK 81
WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGSWSQ V K
Sbjct: 10 WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYVRNK 69
Query: 82 LVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
L D+++ G+ ++++D LP+ PI V + DF + ++ ++L ++ + +D
Sbjct: 70 LAQGKHRDAQRDGGIDGTIIALDLLPMEPI-ADVHFIQGDFREDNVLEQLEEMVGERDVD 128
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+ D I + + F+ + KP L+K + G Q+ E
Sbjct: 129 LVISDMAPNLSGVGVADAARIEHVCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFK 188
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ V KP +SR S+E F+LGR K
Sbjct: 189 HQFKTVAARKPKASRDKSSETFILGRHLK 217
>gi|59711085|ref|YP_203861.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
gi|75354549|sp|Q5E7M3.1|RLME_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|59479186|gb|AAW84973.1| 23S rRNA methyltransferase [Vibrio fischeri ES114]
Length = 209
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +A+K YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYVLEAQKRGYRSRAIFKIEEIQNKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ V G V++ D LP+ I G L + DF + + D L+ ++ D +D
Sbjct: 69 AVEQVGDEGQ--------VIACDILPMDSIAGVSFL-QGDFREEAVLDALLERIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN +G +D + +LA+ + R + P +K++ G Q +
Sbjct: 120 VVMSDMAPNMSGNLAVDQPRAMYLVELALDMCRQVLA---PNGSFTVKVFQGEGFDQYLQ 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E++++ G+KG
Sbjct: 177 EVRNMFKVVKIRKPDSSRARSREVYIVATGYKG 209
>gi|261250304|ref|ZP_05942880.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase E [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417955562|ref|ZP_12598576.1| 23S rRNA methyltransferase J [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260939420|gb|EEX95406.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase E [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342812830|gb|EGU47819.1| 23S rRNA methyltransferase J [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 209
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K++ G +++ D LP+ PI G L + DF + + L+ ++ +D
Sbjct: 69 AAKIIGEEGQ--------IIACDLLPMDPIAGVSFL-QGDFRDDAVLEALLKRIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQFVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 DIRDMFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|86148134|ref|ZP_01066433.1| cell division protein FtsJ [Vibrio sp. MED222]
gi|218710452|ref|YP_002418073.1| 23S rRNA methyltransferase [Vibrio splendidus LGP32]
gi|254809562|sp|B7VJI4.1|RLME_VIBSL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|85834051|gb|EAQ52210.1| cell division protein FtsJ [Vibrio sp. MED222]
gi|218323471|emb|CAV19648.1| 23S rRNA methylase [Vibrio splendidus LGP32]
Length = 209
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 120/213 (56%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L PG+ ++D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLTPGMTIVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K++ +G +++ D LP+ PI G L + DF + + D L+ ++ + +D
Sbjct: 69 AAKIIGDNGQ--------IIACDLLPMDPIAGVSFL-QGDFREEAVLDALLERIQPNMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + + ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLATN---GSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VK+ KP SSR+ S E+F++ G+KG
Sbjct: 177 DVREMFKTVKVRKPDSSRARSREVFIVATGYKG 209
>gi|380510811|ref|ZP_09854218.1| cell division protein ftsj (rrna (uridine) methyltransferase
activity ) [Xanthomonas sacchari NCPPB 4393]
Length = 210
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 117/210 (55%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ FADP+V+KA+ E R R+A+KL E+ + + L+P + V+D GAAPG W
Sbjct: 4 RSKSSQRWLREHFADPFVKKAQAEGMRSRAAYKLEELLQRDRLLKPDMVVVDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ K S +G VL++D L + P+ G L DF + + + +L D
Sbjct: 64 SQQVRK--------SMGDRGRVLALDILEMPPLAGVEFLH-GDFREDTVLSQFEAMLGDT 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GM +D + LA + FA ++ KP LIK++ G
Sbjct: 115 PVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMAFADSHLKPNGAFLIKLFQGVGFDDYIR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E++ LG+G
Sbjct: 175 DMRRRYEKVTIRKPAASRKRSPEVYALGQG 204
>gi|149185550|ref|ZP_01863866.1| 23S rRNA methylase [Erythrobacter sp. SD-21]
gi|148830770|gb|EDL49205.1| 23S rRNA methylase [Erythrobacter sp. SD-21]
Length = 219
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 117/217 (53%), Gaps = 11/217 (5%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
K + SS WL+RQ DPYV++AK + YR R+A+KL+E+D K L+ +++D G
Sbjct: 14 TAKKRSESSTRWLQRQLNDPYVKQAKADGYRSRAAYKLIEMDEKFGLLKGASRIVDLGIT 73
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
PG WSQVA K+ +PK V+ +D L PI+G V + + DF D R++
Sbjct: 74 PGGWSQVARKV---------RPKATVVGIDLLETEPIEG-VTIFQMDFMDDDAP-RVLEE 122
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
K D+V+SDMA N G ++ DH L A FAV G L K+ G
Sbjct: 123 ALGGKADLVMSDMAANTVGHKQTDHLRTMGLVEAAAWFAVENLDTGGTFLAKVLAGGTDK 182
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L + + + + VK KPP+SR S+E +++ +GFKG
Sbjct: 183 DLLDLLKKHFKTVKHAKPPASRKGSSEWYVIAQGFKG 219
>gi|375105772|ref|ZP_09752033.1| 23S rRNA methylase [Burkholderiales bacterium JOSHI_001]
gi|374666503|gb|EHR71288.1| 23S rRNA methylase [Burkholderiales bacterium JOSHI_001]
Length = 224
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 6/212 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ----- 77
WL DPYV+ A+KE YR R+A+KL EID + + PG V+D G+APG+WSQ
Sbjct: 14 WLHDHINDPYVRLAQKEGYRARAAYKLKEIDETLHLIHPGQLVVDLGSAPGAWSQYLRRR 73
Query: 78 VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL 137
A K+ + G + G ++++D LP+ PI+G V DF + + +L T L +
Sbjct: 74 FAPKVAGAGGAAVGELDGCLIALDILPMEPIEG-VQFILGDFREDAVMAQLATALGGRQA 132
Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
D+V+SDMAPN +G+ D I L + F + KP ++K + G QL E
Sbjct: 133 DLVVSDMAPNLSGIESADAARIAHLIELAMEFCARHMKPQGALVVKAFHGSGYSQLVEGF 192
Query: 198 TRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R + VK +KP +SR S+E FL+G G K +
Sbjct: 193 KRQFRVVKPIKPKASRDKSSETFLVGIGLKAQ 224
>gi|15836699|ref|NP_297387.1| cell division protein [Xylella fastidiosa 9a5c]
gi|71275932|ref|ZP_00652215.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
Dixon]
gi|170729314|ref|YP_001774747.1| cell division protein [Xylella fastidiosa M12]
gi|81548421|sp|Q9PH52.1|RLME_XYLFA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705325|sp|B0U1F2.1|RLME_XYLFM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|9104872|gb|AAF82907.1|AE003863_9 cell division protein [Xylella fastidiosa 9a5c]
gi|71163309|gb|EAO13028.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
Dixon]
gi|71730228|gb|EAO32314.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
subsp. sandyi Ann-1]
gi|167964107|gb|ACA11117.1| cell division protein [Xylella fastidiosa M12]
Length = 213
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 116/207 (56%), Gaps = 9/207 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F+DP+V+KA+ E R R+A+KL EI + + LRP + V+D GAAPG WSQ
Sbjct: 6 SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEEILKRDRILRPNMVVIDLGAAPGGWSQQ 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
K + +G V+++D + + P+ G L + DF + +L +LK +D
Sbjct: 66 IRKQMGD--------RGRVIALDIVKMAPLVGIEFL-QGDFRDKAVLSQLEIMLKGQPVD 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPN +GM MD + LA + FA + KPG LIK++ G +
Sbjct: 117 LVLSDMAPNKSGMDAMDQPRMMYLAELAMDFADIHVKPGGSFLIKLFHGVGSDDYIRQLR 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRG 225
Y +V I KP +SR S E+++LG G
Sbjct: 177 HRYKKVAIRKPLASRKRSPEVYILGDG 203
>gi|393722927|ref|ZP_10342854.1| 23S rRNA methyltransferase J [Sphingomonas sp. PAMC 26605]
Length = 223
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 119/214 (55%), Gaps = 11/214 (5%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ S WL+RQ DPYV++AK + +R R+A+KL E+D + FL+ +V+D G APG W
Sbjct: 18 RTAQSTRWLERQLNDPYVKRAKADGFRSRAAYKLSELDERFGFLKGKRRVVDLGLAPGGW 77
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+QV + V PK ++ +D LP+ PI+G +L + DF +RL+ L
Sbjct: 78 AQVVRRQV---------PKAAIVGIDLLPVDPIEGVTIL-QLDFMDDVAPERLMAGLGGT 127
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+VLSDMA N G + D L A + FA+ +PG + K++ G L
Sbjct: 128 P-DLVLSDMAANTVGHPQTDALRTMGLVEAALAFAIDVLEPGGAFVGKVFAGGADTALVA 186
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ VK KPP+SR S+E +++ +GFKG+
Sbjct: 187 EMKRNFTTVKHAKPPASRKASSEWYVVAQGFKGR 220
>gi|334143726|ref|YP_004536882.1| ribosomal RNA large subunit methyltransferase E
[Thioalkalimicrobium cyclicum ALM1]
gi|333964637|gb|AEG31403.1| Ribosomal RNA large subunit methyltransferase E
[Thioalkalimicrobium cyclicum ALM1]
Length = 205
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 122/209 (58%), Gaps = 9/209 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ SS WL+ F DPYV +A+KE +R R+ +KL EI+ K + ++P + V+D GAAPG
Sbjct: 2 ARSKSSSRWLQEHFDDPYVLQAQKEGWRSRAIYKLKEINEKDQLIKPDMLVIDLGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQ A + V SH G VL++D LP+ G L + DFT+ + ++L+ ++
Sbjct: 62 WSQYAAQQV-SHA-------GEVLALDILPVESYAGVRFL-QGDFTEESVFEKLLDLINK 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+D+V+SDMAPN +G + +D L + A KPG + L+K++ G QL
Sbjct: 113 RPVDLVMSDMAPNFSGNKGVDIPRAMYLVELTLDLASRVLKPGGNVLMKVFQGEGYEQLL 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLG 223
++ + Y +V KP +SR+ S+E++LLG
Sbjct: 173 ATMRQDYCKVITRKPQASRARSSEIYLLG 201
>gi|187929109|ref|YP_001899596.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12J]
gi|226705302|sp|B2UGQ0.1|RLME_RALPJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|187725999|gb|ACD27164.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12J]
Length = 221
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 121/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 2 AKNKFNQSWLHDHINDPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGS 61
Query: 75 WSQ-VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V KL S + G ++++D LP+ I V + DF + ++ +L I+
Sbjct: 62 WSQYVRNKLAASPRAKDGRIDGAIVAIDILPMEAI-ADVTFIQGDFREDEVFRQLEEIVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
+ K+D+VLSDMAPN +G+ D + +A + FA+ + KP LIK + G
Sbjct: 121 EVSGGGKVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAMAHLKPEGALLIKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E FLLGR K
Sbjct: 181 YSQIVEMFKRHFKIVAPRKPKASRDKSSETFLLGRQLK 218
>gi|407801039|ref|ZP_11147883.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax sp.
W11-5]
gi|407024476|gb|EKE36219.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax sp.
W11-5]
Length = 207
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 114/212 (53%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F D +V +A+ E YR R++FKLLEI K + RPG++VLD GAAPG W
Sbjct: 3 RSKSSSRWLQEHFNDQWVARAQAEGYRSRASFKLLEIHEKDRLFRPGMRVLDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +L+ G +++ D L + PI V + DF + + ++L+ L
Sbjct: 63 SQVAARLIGGQGQ--------IIASDILAMDPIPD-VTFIQGDFREESVFEQLLAALGGK 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+D+V+SDMAPN +G R +D LA + A P L+K++ G
Sbjct: 114 KVDLVMSDMAPNMSGTRAVDQPRAMYLAELALDMARRVLAPDGRFLVKVFQGEGLDSYRR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + ++ KP +SR S E+++LG G K
Sbjct: 174 DLHDCFDRLVTRKPAASRPRSPEVYVLGSGLK 205
>gi|83644093|ref|YP_432528.1| 23S rRNA methylase [Hahella chejuensis KCTC 2396]
gi|123534482|sp|Q2SMM1.1|RLME_HAHCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83632136|gb|ABC28103.1| 23S rRNA methylase [Hahella chejuensis KCTC 2396]
Length = 206
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 123/215 (57%), Gaps = 11/215 (5%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
G+ SS WL +D YV+K+K++ +R R+++KL+E+D + K LRPG+ V+D GAAPG
Sbjct: 2 GRSKSSSRWLNEHHSDVYVKKSKEDGFRSRASYKLIELDRQDKLLRPGMTVIDLGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQV +V G V++ D L + I G V + DFT+ ++ D ++ +
Sbjct: 62 WSQVVADVVGDQGK--------VVACDLLSMDSIAG-VTFFQGDFTEDEMLDAILNEVNS 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ-L 193
+D+V+SDMAPN +GM+ +D L + A K + K++ G Q L
Sbjct: 113 RPVDLVISDMAPNMSGMKSVDIPKAMYLVELALDLACRVLKKNGCFVAKVFQGEGFDQIL 172
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ES RF S V I KP +SR+ S E++L+ +GF+G
Sbjct: 173 QESRGRF-SSVNIRKPDASRARSREIYLVAKGFRG 206
>gi|290996969|ref|XP_002681054.1| predicted protein [Naegleria gruberi]
gi|284094677|gb|EFC48310.1| predicted protein [Naegleria gruberi]
Length = 239
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 123/217 (56%), Gaps = 18/217 (8%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKI-KFLRPGLKVLDCGAAPGSWSQ 77
SS WL RQ D +V++AK + YR R+AFKLLEID K KFL ++D GAAPGSWSQ
Sbjct: 32 SSGRWLDRQRRDTFVKQAKAQGYRSRAAFKLLEIDEKWGKFLEKSKVIIDLGAAPGSWSQ 91
Query: 78 VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDG------AVVLSKCDFTQPDIQDRLVTI 131
VA + + S G ++++D L + P+ ++ K F D +L +
Sbjct: 92 VAAEKMKSGGK--------LITIDILDMEPLKSPPNKNLQIIQLKGKF--EDSIPQLRSY 141
Query: 132 LKDDKL-DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L + + D +LSDMAPN +G++ +DH+ I L I FA KPG L+KI+ G
Sbjct: 142 LNEGEFADCLLSDMAPNTSGVKSLDHNRIIFLCNTSIDFAFEVLKPGGCMLMKIFSGPED 201
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
L+ + +++ V +KP SSRS S+E+++L GFK
Sbjct: 202 ATLKNDLKQYFENVNFVKPASSRSESSEVYVLAEGFK 238
>gi|421618531|ref|ZP_16059506.1| cell division protein FtsJ [Pseudomonas stutzeri KOS6]
gi|409779284|gb|EKN58942.1| cell division protein FtsJ [Pseudomonas stutzeri KOS6]
Length = 206
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL DP+V++A+K+ R RS++KL+E++ K K +RPG+ V+D G+APG W
Sbjct: 3 RSKSSRRWLDEHVNDPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +V KG VL+ D LP+ +D V + DFT+ + +++ +L
Sbjct: 63 SQVAGGIVGE--------KGRVLATDILPMGGLDN-VDFVQGDFTEDAVFQQILGMLDGR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+++SD+APN +G+ D L + KPG + ++K++ G + +
Sbjct: 114 QPDLIVSDIAPNISGVAAADQAASMYLVELTLDMVRQVLKPGGNYVVKVFQGEGSDEFLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V I KP +SR S E++L+ +GFKG
Sbjct: 174 DVRSSFEKVSIRKPEASRPRSREVYLVAKGFKG 206
>gi|225075313|ref|ZP_03718512.1| hypothetical protein NEIFLAOT_00316 [Neisseria flavescens
NRL30031/H210]
gi|224953488|gb|EEG34697.1| hypothetical protein NEIFLAOT_00316 [Neisseria flavescens
NRL30031/H210]
Length = 206
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 9/206 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSWSQV
Sbjct: 7 SSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSWSQV 66
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV G V ++D LP+ I+G V + DF + + ++ +L + LD
Sbjct: 67 AAKLVG--------KTGAVFALDILPMDAIEG-VSFIQGDFREDAVLEQFEALLDNRPLD 117
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+ DMAPN +G D L + FA + K G L+K++ G + ++
Sbjct: 118 LVICDMAPNMSGNAVTDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYTATMH 177
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGR 224
++ V+ KP +SR+ S+E++LLG+
Sbjct: 178 EIFASVQTRKPDASRNRSSEIYLLGK 203
>gi|83718666|ref|YP_443289.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
gi|167621275|ref|ZP_02389906.1| FtsJ-like methyltransferase [Burkholderia thailandensis Bt4]
gi|257139525|ref|ZP_05587787.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
gi|123536418|sp|Q2SUW0.1|RLME_BURTA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83652491|gb|ABC36554.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
Length = 220
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 118/217 (54%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVAV-KLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ PI V + DF + + +L
Sbjct: 62 WSQYARNKLAQGRRRDAVREGGIDGTIIALDMLPMEPI-ADVHFIQGDFREETVLHQLEE 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 121 VLAGRSVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLK 217
>gi|84387293|ref|ZP_00990314.1| cell division protein FtsJ [Vibrio splendidus 12B01]
gi|84377940|gb|EAP94802.1| cell division protein FtsJ [Vibrio splendidus 12B01]
Length = 209
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K YR R+ FK+ EI +K K L PG+ ++D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKRGYRSRAYFKMEEIQTKDKLLTPGMTIVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K++ +G +++ D LP+ PI G L + DF + + D L+ ++ + +D
Sbjct: 69 AAKIIGDNGQ--------IIACDLLPMDPIAGVSFL-QGDFREEAVLDALLERIQPNMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + + ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLATN---GSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VK+ KP SSR+ S E+F++ G+KG
Sbjct: 177 DVREMFKTVKVRKPDSSRARSREVFIVATGYKG 209
>gi|325924512|ref|ZP_08186031.1| 23S rRNA Um-2552 2'-O-methyltransferase [Xanthomonas gardneri ATCC
19865]
gi|325545007|gb|EGD16342.1| 23S rRNA Um-2552 2'-O-methyltransferase [Xanthomonas gardneri ATCC
19865]
Length = 210
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 114/210 (54%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK FADPYV+KA+ E R R+A+KL E+ + + L+P + V+D GAAPG W
Sbjct: 4 RSKSSQRWLKEHFADPYVKKAQAEGMRSRAAYKLEELLQRDRLLKPNMVVVDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
Q + + G VL++D L + P+ G L DF + + +L D
Sbjct: 64 CQQVRRSLGDTGR--------VLALDILEMPPLAGVEFLH-GDFREQAVLSEFEAMLGDV 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+VLSDMAPN +GM +D + LA + FA T+ K G LIK++ G
Sbjct: 115 PVDLVLSDMAPNKSGMDAVDQPRMMHLAELAMEFADTHLKTGGAFLIKLFQGVGSDDYIR 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
+ R Y +V I KP +SR S E++ LG+G
Sbjct: 175 ELRRRYEKVTIRKPAASRKRSPEVYALGQG 204
>gi|261380964|ref|ZP_05985537.1| ribosomal RNA large subunit methyltransferase J [Neisseria subflava
NJ9703]
gi|284796223|gb|EFC51570.1| ribosomal RNA large subunit methyltransferase J [Neisseria subflava
NJ9703]
Length = 206
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 116/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLHEHVNDHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KLV G V ++D LP+ I+G V + DF + + ++ +L +
Sbjct: 64 SQVAAKLVG--------KTGAVFALDILPMDAIEG-VSFIQGDFREDAVLEQFEALLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G L+K++ G +
Sbjct: 115 PLDLVICDMAPNMSGNAVTDQARSFYLCELALDFASQHLKTGGSFLVKVFQGAGYQEYTA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ ++ V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREIFASVQTRKPDASRNRSSEIYLLGK 203
>gi|167587473|ref|ZP_02379861.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ubonensis
Bu]
Length = 220
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 121/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ PI V + DF + ++ +L
Sbjct: 62 WSQYARNKLAQGKKRDAVREGGIDGTIVALDMLPMEPI-ADVHFIQGDFREDEVLHQLEA 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I + + F+ + KP L+K + G
Sbjct: 121 VLEGRPVDLVISDMAPNLSGVASADAARIEHVCDLALEFSQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKIVAPRKPKASRDKSSETFILGRHLK 217
>gi|56478166|ref|YP_159755.1| cell division protein FtsJ [Aromatoleum aromaticum EbN1]
gi|81356990|sp|Q5P1G0.1|RLME_AROAE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|56314209|emb|CAI08854.1| cell division protein FtsJ [Aromatoleum aromaticum EbN1]
Length = 207
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 19/215 (8%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
+S W++ DPYVQ+AK E YR R+AFKL+E+D + + +R G+ V+D GAAPGSWSQV
Sbjct: 6 TSKAWMQEHVNDPYVQRAKSEGYRSRAAFKLIELDDRDRLMRSGMVVVDLGAAPGSWSQV 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL- 137
A++ V G ++ + L +F Q D Q+ V + +L
Sbjct: 66 ALRRVGREG--------------RVFALDLLPLDPLGGVEFIQGDFQEEPVLAELESRLG 111
Query: 138 ----DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DVVLSDMAPN +G+ D L + FA + KPG ++K++ G+ +
Sbjct: 112 GLPVDVVLSDMAPNMSGIDTTDQARSIYLGELALEFAGHHLKPGGGFVVKVFQGQGFMEY 171
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + + KP +SR SAE++L+G G++G
Sbjct: 172 RNEAAKHFHALHVRKPKASRDRSAEVYLVGVGYRG 206
>gi|120597892|ref|YP_962466.1| 23S rRNA methyltransferase J [Shewanella sp. W3-18-1]
gi|146293936|ref|YP_001184360.1| 23S rRNA methyltransferase J [Shewanella putrefaciens CN-32]
gi|386314688|ref|YP_006010853.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella putrefaciens
200]
gi|143461753|sp|A1RGW7.1|RLME_SHESW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040339|sp|A4Y9C8.1|RLME_SHEPC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120557985|gb|ABM23912.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sp. W3-18-1]
gi|145565626|gb|ABP76561.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella putrefaciens
CN-32]
gi|319427313|gb|ADV55387.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella putrefaciens
200]
Length = 209
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 118/214 (55%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS+ W+ F D YV+ A+K R R+AFKL E+ K + +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVKLV +G V++ D LP+ PI G L + DF + + + L+T +
Sbjct: 64 GWSQVAVKLVGD--------RGKVIACDILPMDPIVGVDFL-QGDFREEKVLEALLTRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DK+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 ADKVDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + VK KP SSR+ S E++L+ G+K
Sbjct: 175 MKAVKEAFKVVKTRKPDSSRARSREVYLVATGYK 208
>gi|395491107|ref|ZP_10422686.1| 23S rRNA methyltransferase J [Sphingomonas sp. PAMC 26617]
gi|404251927|ref|ZP_10955895.1| 23S rRNA methyltransferase J [Sphingomonas sp. PAMC 26621]
Length = 224
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 117/210 (55%), Gaps = 11/210 (5%)
Query: 20 SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA 79
S WL+RQ DPYV++AK + +R R+A+KL E+D + FL+ V+D G APG W+QV
Sbjct: 22 STRWLERQLNDPYVKRAKADGFRSRAAYKLSELDERFDFLKGKRHVVDLGIAPGGWAQVV 81
Query: 80 VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV 139
+ V PK ++ +D LP+ PIDG +L + DF +RL+ L D+
Sbjct: 82 RRQV---------PKAAIVGIDLLPVDPIDGVEIL-QLDFMDDVAPERLMAALGGAP-DL 130
Query: 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR 199
VLSDMA N G + D L A + FA+ +PG + K++ G L + R
Sbjct: 131 VLSDMAANTVGHPQTDALRTMGLVEAALDFAIDVLQPGGAFVGKVFAGGADTALVAEMKR 190
Query: 200 FYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
++ VK KPP+SR S+E +++ +GFKG+
Sbjct: 191 NFTTVKHAKPPASRKASSEWYVVAQGFKGR 220
>gi|254292202|ref|ZP_04962970.1| cell division protein FtsJ [Vibrio cholerae AM-19226]
gi|421350465|ref|ZP_15800831.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HE-25]
gi|150421883|gb|EDN13862.1| cell division protein FtsJ [Vibrio cholerae AM-19226]
gi|395954587|gb|EJH65197.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HE-25]
Length = 209
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +AKK+ YR R+ FK+ EI +K K L+ G+ V+D GAAPG WSQ
Sbjct: 9 SSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQF 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G V++ D LP+ I G L + DF + + + L+ ++ D +D
Sbjct: 69 AAKVVGEGGR--------VIACDLLPMESIAGVSFL-QGDFREEAVLNALLDRIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G +
Sbjct: 120 VVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDDYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + VKI KP SSRS S E+F++ G+KG
Sbjct: 177 AVRNLFKVVKIRKPDSSRSRSREVFIVATGYKG 209
>gi|167836218|ref|ZP_02463101.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
thailandensis MSMB43]
Length = 220
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 118/217 (54%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ PI V + DF + + +L
Sbjct: 62 WSQYARNKLAQGSRRDAVREGGIDGTIVALDMLPMEPI-ADVHFIQGDFREESVLHQLEE 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 121 VLAGRSVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLK 217
>gi|388602401|ref|ZP_10160797.1| 23S rRNA methyltransferase J [Vibrio campbellii DS40M4]
Length = 209
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+ G+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQTKDKLLKSGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K++ G +++ D LP+ PI G L + DF + D L+ ++ +D
Sbjct: 69 AAKIIGEEGQ--------IIACDLLPMDPIAGVSFL-QGDFRDEAVLDALLERIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G+ Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGKGFDQFVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDMFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|260771821|ref|ZP_05880739.1| ribosomal RNA large subunit methyltransferase J [Vibrio
metschnikovii CIP 69.14]
gi|260613113|gb|EEX38314.1| ribosomal RNA large subunit methyltransferase J [Vibrio
metschnikovii CIP 69.14]
Length = 209
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 116/213 (54%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +AKK+ YR R+ FKL EI SK K LR G+ V+D GAAPG WSQ
Sbjct: 9 SSSRWLKEHFDDIYVHEAKKKGYRSRAIFKLKEIQSKDKLLRTGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +V G V++ D LP+ I G L + DF + + L+ ++ D +D
Sbjct: 69 AASIVGD--------TGQVIACDILPMDSIAGVSFL-QGDFREESVLAALIERIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G +
Sbjct: 120 VVMSDMAPNMAGNNSVDQPRAMYLVELALDMCRQVLI---PNGSFVVKVFQGEGFDHYVQ 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E++++ G+KG
Sbjct: 177 EVRSMFKAVKIRKPDSSRARSREVYVVATGYKG 209
>gi|375266558|ref|YP_005024001.1| 23S rRNA methyltransferase J [Vibrio sp. EJY3]
gi|369841878|gb|AEX23022.1| 23S rRNA methyltransferase J [Vibrio sp. EJY3]
Length = 209
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G +++ D LP+ PI G L + DF + D L+ ++ +D
Sbjct: 69 AAKIVGDSGQ--------IIACDLLPMDPIAGVSFL-QGDFRDDAVLDALLERIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VK+ KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDMFKVVKVRKPDSSRARSREVFVVATGYKG 209
>gi|377821306|ref|YP_004977677.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. YI23]
gi|357936141|gb|AET89700.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. YI23]
Length = 220
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 122/217 (56%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D G+ PGS
Sbjct: 2 AKNRFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGSTPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL + ++++ G+ ++++D LP+ PI V + DF + ++ +L
Sbjct: 62 WSQYARNKLAHGAKRNTEREGGIDGTIIALDILPMEPI-ADVTFIQGDFREDEVLAQLAE 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
I+ + ++D+V+SDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 IVGERQVDLVISDMAPNLSGVASADAARIEHLCDLALEFAQNHLKPEGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKHQFKVVAPRKPKASRDKSSETFILGRRLK 217
>gi|167582305|ref|ZP_02375179.1| FtsJ-like methyltransferase [Burkholderia thailandensis TXDOH]
Length = 220
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 118/217 (54%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVAV-KLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ PI V + DF + + +L
Sbjct: 62 WSQYARNKLAQGRRRDAVREGGIDGTIVALDMLPMEPI-ADVHFIQGDFREEAVLHQLEE 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 121 VLAGRSVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLK 217
>gi|254230590|ref|ZP_04923953.1| ribosomal RNA large subunit methyltransferase J [Vibrio sp. Ex25]
gi|262393375|ref|YP_003285229.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase E [Vibrio sp. Ex25]
gi|269968318|ref|ZP_06182340.1| cell division protein FtsJ [Vibrio alginolyticus 40B]
gi|451972572|ref|ZP_21925778.1| ribosomal RNA large subunit methyltransferase J [Vibrio
alginolyticus E0666]
gi|151936891|gb|EDN55786.1| ribosomal RNA large subunit methyltransferase J [Vibrio sp. Ex25]
gi|262336969|gb|ACY50764.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase E [Vibrio sp. Ex25]
gi|269827069|gb|EEZ81381.1| cell division protein FtsJ [Vibrio alginolyticus 40B]
gi|451931512|gb|EMD79200.1| ribosomal RNA large subunit methyltransferase J [Vibrio
alginolyticus E0666]
Length = 209
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G +++ D LP+ PI G L + DF + + L+ ++ +D
Sbjct: 69 AAKIVGDSGQ--------IIACDLLPMDPIAGVSFL-QGDFRDDAVLEALLERIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDMFKAVKIRKPDSSRARSREVFVVATGYKG 209
>gi|348027847|ref|YP_004870533.1| cell division protein FtsJ [Glaciecola nitratireducens FR1064]
gi|347945190|gb|AEP28540.1| cell division protein FtsJ [Glaciecola nitratireducens FR1064]
Length = 206
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 118/213 (55%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL DPYV+KA+ + YR R+++KL+EI+ K K +RPG V+D G+APG W
Sbjct: 3 RTKTSKKWLDEHVNDPYVKKAQIDGYRSRASYKLIEINEKDKLIRPGSVVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV V G V++ D LP+ I G V + DFT+ + ++++ L +
Sbjct: 63 SQVVSPWVGDS--------GRVIASDILPMDGIVG-VTFIQGDFTEEAVYKQILSELNGE 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+DVV+SDMAPN +G+ D L + A KPG K++ G + +
Sbjct: 114 KVDVVVSDMAPNLSGVNTTDQYSSIYLVELALDMARNVLKPGGSFCAKVFQGVGYEEYAK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V + KP +SR S E++++G+GFKG
Sbjct: 174 DVRSSFDKVLVRKPAASRPRSREVYIVGKGFKG 206
>gi|448732348|ref|ZP_21714629.1| 23S rRNA methyltransferase J [Halococcus salifodinae DSM 8989]
gi|445804921|gb|EMA55151.1| 23S rRNA methyltransferase J [Halococcus salifodinae DSM 8989]
Length = 251
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 107/196 (54%), Gaps = 12/196 (6%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D Y KAK++ YR RSA+KL +ID + P V+D GAAPG W QVA + +
Sbjct: 5 DEYYNKAKQQGYRSRSAYKLQQIDDTADLIAPSDTVIDLGAAPGGWLQVAAERADG---- 60
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT 149
G V+ VD+ I IDG V + D T+ Q + + K D+VLSDMAPN T
Sbjct: 61 -----GRVVGVDRQRIESIDG-VETVRGDLTEESTQAEIAERVG--KADLVLSDMAPNMT 112
Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
G E+DH LA + A T PG D ++K +DGR+ LE I + V+ ++P
Sbjct: 113 GEYELDHARSIHLARQALDVARTILTPGGDLVVKAFDGRDLDDLEADIEDEFEYVRTVRP 172
Query: 210 PSSRSHSAELFLLGRG 225
+SR S+ELFL+G+G
Sbjct: 173 DASRDESSELFLVGKG 188
>gi|375130040|ref|YP_004992139.1| 23S rRNA methyltransferase J [Vibrio furnissii NCTC 11218]
gi|315179213|gb|ADT86127.1| 23S rRNA methyltransferase J [Vibrio furnissii NCTC 11218]
Length = 209
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +AKK+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLQPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +V G V++ D LP+ I G L + DF + + D L+ ++ + +D
Sbjct: 69 AAGIVGESGQ--------VIACDILPMDSIAGVSFL-QGDFREEAVLDALLERIQPNMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E++++ G+KG
Sbjct: 177 DVRDMFKAVKIRKPDSSRARSREVYIVATGYKG 209
>gi|429744052|ref|ZP_19277572.1| ribosomal RNA large subunit methyltransferase J [Neisseria sp. oral
taxon 020 str. F0370]
gi|429163935|gb|EKY06114.1| ribosomal RNA large subunit methyltransferase J [Neisseria sp. oral
taxon 020 str. F0370]
Length = 206
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL D YV A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSW
Sbjct: 4 RSKSSKAWLNEHINDHYVHLAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ A KL + G V ++D LP+ ++G V + DF + D+ + +L
Sbjct: 64 SQAAAKLAGA--------SGKVFALDILPMAAVEG-VSFIQGDFRENDVLAQFEALLGGR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G D L + FA + K G + L+K++ G +
Sbjct: 115 ALDLVICDMAPNMSGHAVTDAAKSLYLNELALDFARNHLKTGGNFLVKVFQGAGYQEYLA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
+ R ++ V+ KP +SR+ S+E++LLG+
Sbjct: 175 EMRRSFASVQTRKPDASRNRSSEIYLLGK 203
>gi|340781167|ref|YP_004747774.1| cell division protein FtsJ [Acidithiobacillus caldus SM-1]
gi|340555320|gb|AEK57074.1| cell division protein FtsJ [Acidithiobacillus caldus SM-1]
Length = 233
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 118/219 (53%), Gaps = 18/219 (8%)
Query: 13 PKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAP 72
P + SS WL+ F DP+VQ+A +E YR R+++KLLEI K LR G +VLD GAAP
Sbjct: 26 PVARSKSSKQWLREHFQDPFVQRAAREGYRSRASYKLLEIQEKDGLLRRGQRVLDLGAAP 85
Query: 73 GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT-- 130
G W+QVA +V S G +++VD+L + P+ GA+V+ Q DI D V
Sbjct: 86 GGWTQVAAAIVGSEGR--------IVAVDRLAMDPVPGALVI------QGDIYDEAVIAQ 131
Query: 131 --ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188
+ +D++LSDMAPN +G+ D L + A + PG L+K++ G
Sbjct: 132 CRAAFPEGVDLILSDMAPNLSGIASADQARAVALCELALDLAREWLVPGGKLLMKVFMGA 191
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+L + + ++ + KP +SR+ SAE + L ++
Sbjct: 192 GAQELRRELQGSFRRIVVRKPEASRARSAEQYWLALDYR 230
>gi|254508251|ref|ZP_05120375.1| ribosomal RNA large subunit methyltransferase J [Vibrio
parahaemolyticus 16]
gi|219548868|gb|EED25869.1| ribosomal RNA large subunit methyltransferase J [Vibrio
parahaemolyticus 16]
Length = 209
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K++ G +++ D LP+ PI G L + DF + + L+ ++ +D
Sbjct: 69 AAKIIGDSGQ--------IIACDLLPMDPIAGVSFL-QGDFRDDAVLEALLDRIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQFVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDMFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|76808881|ref|YP_333018.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 1710b]
gi|121599034|ref|YP_992622.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei SAVP1]
gi|217423678|ref|ZP_03455179.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 576]
gi|238563619|ref|ZP_00438573.2| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei GB8 horse 4]
gi|242315402|ref|ZP_04814418.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 1106b]
gi|251767842|ref|ZP_02268580.2| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei PRL-20]
gi|254199450|ref|ZP_04905816.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei FMH]
gi|76578334|gb|ABA47809.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 1710b]
gi|121227844|gb|ABM50362.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei SAVP1]
gi|147749046|gb|EDK56120.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei FMH]
gi|217393536|gb|EEC33557.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 576]
gi|238520335|gb|EEP83796.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei GB8 horse 4]
gi|242138641|gb|EES25043.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 1106b]
gi|243061551|gb|EES43737.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei PRL-20]
Length = 252
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 34 AKNRFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 93
Query: 75 WSQVAV-KLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ P+ V + DF + + +L
Sbjct: 94 WSQYARNKLAQGKRRDAVREGGIDGTIIALDMLPMEPV-ADVHFIQGDFREESVLHQLEE 152
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 153 VLAGRAVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 212
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + V KP +SR S+E F+LGR K
Sbjct: 213 SQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLK 249
>gi|145589197|ref|YP_001155794.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|189040319|sp|A4SXL6.1|RLME_POLSQ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|145047603|gb|ABP34230.1| 23S rRNA Um-2552 2'-O-methyltransferase [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 224
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 9/221 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL+ DPYV+ A+KE YR R+ +KL EID + ++ G+ ++D G+APGS
Sbjct: 2 AKNKFNKSWLQDHLTDPYVKMAQKEGYRARAVYKLSEIDEQDHLIKAGMTIVDLGSAPGS 61
Query: 75 WSQVAVKLVNSHG-----YDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV 129
WSQ + G +S +P G ++++D LP+ I V + DF + + L
Sbjct: 62 WSQYVRNRLTELGKSNPKIESGKPDGQIIAIDILPMEDI-ADVSFIQGDFREEEGLAALE 120
Query: 130 TIL---KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186
+L + K+D+VLSDMAPN +G+ D + LA + FA + KP LIK ++
Sbjct: 121 ALLPKSAEGKVDLVLSDMAPNLSGVGVADSARMAFLAEIALDFATAHLKPEGALLIKCFN 180
Query: 187 GRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G Q+ ES + + V KP +SR+ S+E+FLLG+ K
Sbjct: 181 GSGYSQIVESFKKVFKTVASRKPKASRAKSSEIFLLGKNLK 221
>gi|336310469|ref|ZP_08565441.1| cell division protein FtsJ / ribosomal RNA large subunit
methyltransferase J [Shewanella sp. HN-41]
gi|335866199|gb|EGM71190.1| cell division protein FtsJ / ribosomal RNA large subunit
methyltransferase J [Shewanella sp. HN-41]
Length = 209
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 118/214 (55%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS+ W+ F D YV+ A+K R R+AFKL E+ K + +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVKLV +G V++ D LP+ PI G L + DF + + + L+T +
Sbjct: 64 GWSQVAVKLVGD--------RGKVIACDILPMDPIVGVDFL-QGDFREDKVLEALLTRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DK+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 ADKVDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + VK KP SSR+ S E++L+ G+K
Sbjct: 175 MKAVKEAFKVVKTRKPDSSRARSREVYLVATGYK 208
>gi|359408500|ref|ZP_09200969.1| 23S rRNA methylase [SAR116 cluster alpha proteobacterium HIMB100]
gi|356676475|gb|EHI48827.1| 23S rRNA methylase [SAR116 cluster alpha proteobacterium HIMB100]
Length = 263
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 120/215 (55%), Gaps = 7/215 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL RQ DP+V +A+ +R R+A KL ++D K +FL P ++V+D G APG
Sbjct: 36 RGRKPSSQRWLTRQLNDPFVAEAQSRGFRSRAAIKLEQMDDKHQFLVPHMRVVDLGCAPG 95
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QV +K + KG ++ +D L + P+ GA +L D T P I +++ T +
Sbjct: 96 GWLQVVMKRCR-----IETGKGALVGIDLLEVDPVPGAELLV-GDITDPAILNQVHTAI- 148
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ + D VLSDMA TG R+ DH L + FA P L K + G + Q
Sbjct: 149 NGQADAVLSDMAAATTGHRQTDHLRTMGLLEIALDFADQVLAPDGIFLAKAFRGGSDRQF 208
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + + + +V+ LKPP+SRS S E +LL GF+G
Sbjct: 209 QDMLNQRFEKVRYLKPPASRSESVETYLLATGFRG 243
>gi|297539174|ref|YP_003674943.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera versatilis
301]
gi|297258521|gb|ADI30366.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera versatilis
301]
Length = 206
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 120/209 (57%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W+ D +V++A+KE YR R+A+KL EID K K ++PG+ ++D G+ PGSWSQV
Sbjct: 6 SSKAWMHEHINDEFVKRAQKEGYRARAAYKLTEIDDKDKLIKPGMTIVDLGSTPGSWSQV 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ + G ++++D L + PI G V + DF + I + L L ++D
Sbjct: 66 AVQRLKGQGR--------IIALDLLEMEPIKG-VEFIQGDFREETILEILEKSLNGKQVD 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V++DMAPN +G+ +D L + F+ + KP + L+K++ G + +++
Sbjct: 117 LVIADMAPNMSGITIVDQAGAAYLTELALEFSKEWLKPSGNFLVKVFIGEGFDDIVKNMR 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +V KP +SR S+E++LLG G K
Sbjct: 177 TIFDKVVTRKPKASRGRSSEVYLLGLGRK 205
>gi|237811778|ref|YP_002896229.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei MSHR346]
gi|237504609|gb|ACQ96927.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei MSHR346]
Length = 252
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 34 AKNRFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 93
Query: 75 WSQVAV-KLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ P+ V + DF + + +L
Sbjct: 94 WSQYARNKLAQGKRRDAVREGGIDGTIIALDMLPMEPV-ADVHFIQGDFREESVLHQLEE 152
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 153 VLAGRAVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 212
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + V KP +SR S+E F+LGR K
Sbjct: 213 SQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLK 249
>gi|420256113|ref|ZP_14758974.1| 23S rRNA methylase [Burkholderia sp. BT03]
gi|398043827|gb|EJL36698.1| 23S rRNA methylase [Burkholderia sp. BT03]
Length = 312
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 119/209 (56%), Gaps = 5/209 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ-VAVK 81
WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGSWSQ V K
Sbjct: 102 WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYVRNK 161
Query: 82 LVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
L D+++ G+ ++++D LP+ PI V + DF + ++ ++L ++ + +D
Sbjct: 162 LAQGKHRDAQRDGGIDGTIIALDLLPMEPI-ADVHFIQGDFREDNVLEQLEEMVGERDVD 220
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+ D I + + F+ + KP L+K + G Q+ E
Sbjct: 221 LVISDMAPNLSGVGVADAARIEHVCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFK 280
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ V KP +SR S+E F+LGR K
Sbjct: 281 HQFKTVAARKPKASRDKSSETFILGRHLK 309
>gi|53718994|ref|YP_107980.1| ribosomal RNA large subunit methyltransferase [Burkholderia
pseudomallei K96243]
gi|53725546|ref|YP_102539.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei ATCC 23344]
gi|124383467|ref|YP_001026576.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei NCTC 10229]
gi|126438553|ref|YP_001058524.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 668]
gi|126450179|ref|YP_001080139.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei NCTC 10247]
gi|126453006|ref|YP_001065784.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 1106a]
gi|167719064|ref|ZP_02402300.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei DM98]
gi|167738062|ref|ZP_02410836.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 14]
gi|167815246|ref|ZP_02446926.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 91]
gi|167845199|ref|ZP_02470707.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei B7210]
gi|167893751|ref|ZP_02481153.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 7894]
gi|167902199|ref|ZP_02489404.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei NCTC 13177]
gi|167910441|ref|ZP_02497532.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 112]
gi|167918467|ref|ZP_02505558.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei BCC215]
gi|254178317|ref|ZP_04884972.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei ATCC 10399]
gi|254180203|ref|ZP_04886802.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 1655]
gi|254188378|ref|ZP_04894889.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei Pasteur 52237]
gi|254198319|ref|ZP_04904741.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei S13]
gi|254205763|ref|ZP_04912115.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei JHU]
gi|254261558|ref|ZP_04952612.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 1710a]
gi|254358836|ref|ZP_04975109.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei 2002721280]
gi|81379953|sp|Q63V86.1|RLME_BURPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|81605295|sp|Q62L80.1|RLME_BURMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|143459671|sp|Q3JTT5.2|RLME_BURP1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|158513524|sp|A3NTW3.1|RLME_BURP0 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040695|sp|A3N853.1|RLME_BURP6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040700|sp|A1V319.2|RLME_BURMS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189044089|sp|A3MIQ3.1|RLME_BURM7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189044090|sp|A2S3Q7.1|RLME_BURM9 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|52209408|emb|CAH35353.1| putative ribosomal RNA large subunit methyltransferase
[Burkholderia pseudomallei K96243]
gi|52428969|gb|AAU49562.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei ATCC 23344]
gi|124291487|gb|ABN00756.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei NCTC 10229]
gi|126218046|gb|ABN81552.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 668]
gi|126226648|gb|ABN90188.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 1106a]
gi|126243049|gb|ABO06142.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei NCTC 10247]
gi|147753206|gb|EDK60271.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei JHU]
gi|148027963|gb|EDK85984.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei 2002721280]
gi|157936057|gb|EDO91727.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei Pasteur 52237]
gi|160699356|gb|EDP89326.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
mallei ATCC 10399]
gi|169655060|gb|EDS87753.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei S13]
gi|184210743|gb|EDU07786.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 1655]
gi|254220247|gb|EET09631.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 1710a]
Length = 220
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVAV-KLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ P+ V + DF + + +L
Sbjct: 62 WSQYARNKLAQGKRRDAVREGGIDGTIIALDMLPMEPV-ADVHFIQGDFREESVLHQLEE 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 121 VLAGRAVDLVISDMAPNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKHQFKTVAPRKPKASRDKSSETFILGRHLK 217
>gi|119504342|ref|ZP_01626422.1| ribosomal RNA methyltransferase RrmJ/FtsJ [marine gamma
proteobacterium HTCC2080]
gi|119459850|gb|EAW40945.1| ribosomal RNA methyltransferase RrmJ/FtsJ [marine gamma
proteobacterium HTCC2080]
Length = 208
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 121/215 (56%), Gaps = 11/215 (5%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS WLK D YVQ+A KE YR R+ +KL EI+ + + ++PG+ VLD GAAPG W
Sbjct: 4 KRSSSRAWLKEHREDLYVQRAVKEGYRSRACYKLKEINDRDRVIKPGMTVLDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-DGAVVLSKCDFTQPDIQDRLVTILKD 134
SQVAV++V + +G V++ D LP+ + D +L DFT+ + + L+ +L +
Sbjct: 64 SQVAVEMVGA--------RGRVIASDILPMDSLADVEFILG--DFTEEAVFEALLNLLGE 113
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+DVVLSDMAPN +G+ +D L + A + G + K++ G +
Sbjct: 114 SAVDVVLSDMAPNMSGVSAVDQPRSMYLVELALDLATQTLEKGGTLVSKVFQGEGFEAVM 173
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +V KP +SR S E++L+ GFKG+
Sbjct: 174 STARQNFDRVLTRKPEASRPRSREVYLVASGFKGQ 208
>gi|331007339|ref|ZP_08330535.1| Ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium IMCC1989]
gi|330418855|gb|EGG93325.1| Ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium IMCC1989]
Length = 206
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 120/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F D YVQ+++++ YR R+ +KLLE++ K K ++ + V+D G+APG W
Sbjct: 3 RSKSSKGWLEEHFKDKYVQQSQQDGYRSRACYKLLELNKKDKLIKKNMTVIDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +LV + G V++ D LP+ I G V + DFT+ + + ++ ++
Sbjct: 63 SQVAAELVGDN--------GTVIASDILPMDGIAG-VQFVQGDFTEDSVFEEIMNAMQGF 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K D+V+SDMAPN +GM E+D L + AV + G + K++ G L
Sbjct: 114 KADLVISDMAPNMSGMAEVDQPRAMYLVELALDMAVNTLEVGGGFVAKVFQGEGFDALLA 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ +++V KP +SR+ S E++ + GFKG
Sbjct: 174 ETRKNFTRVVTRKPDASRARSREVYWVATGFKG 206
>gi|114046589|ref|YP_737139.1| 23S rRNA methyltransferase J [Shewanella sp. MR-7]
gi|122944866|sp|Q0HXS3.1|RLME_SHESR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|113888031|gb|ABI42082.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sp. MR-7]
Length = 209
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS+ W+ F D YV+ A+K R R+AFKL E+ K + +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSNRWMLEHFDDHYVKLAQKRGLRSRAAFKLEELQQKDQLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVKL KG V++ D LP+ PI G L + DF + + + L+T +
Sbjct: 64 GWSQVAVKLAGD--------KGKVIACDILPMDPIVGVDFL-QGDFREEKVLEALLTRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DK+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 ADKVDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + VK KP SSR+ S E++L+ G+K
Sbjct: 175 MKAVKEAFKVVKTRKPDSSRARSREVYLVATGYK 208
>gi|407716711|ref|YP_006837991.1| ribosomal RNA large subunit methyltransferase J [Cycloclasticus sp.
P1]
gi|407257047|gb|AFT67488.1| Ribosomal RNA large subunit methyltransferase J [Cycloclasticus sp.
P1]
Length = 206
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 116/212 (54%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K + WL F D YV+KA++ R R+ FKL EID K + LRPG V+D GAAPG W
Sbjct: 3 KHKNKQKWLDEHFNDEYVKKAQQMGLRSRAVFKLEEIDKKDRLLRPGQIVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
S+ A+K + G V+++D L I PIDG V K DF+ ++ +RL ++
Sbjct: 63 SEYAIKKIAGDGR--------VIALDLLDIDPIDG-VDFIKGDFSDDEVFERLQNLIGYQ 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SD+APN +G + +D LA + FA LIK++ G Q +
Sbjct: 114 TVDIVMSDIAPNMSGSKAIDQPKSMYLAELALDFAKNSLNSRGSFLIKLFQGEGFDQYVQ 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +S V I KP +SR+ S E++LL +G K
Sbjct: 174 EAKKVFSTVLIRKPKASRARSREVYLLAKGLK 205
>gi|171059499|ref|YP_001791848.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Leptothrix cholodnii
SP-6]
gi|226703309|sp|B1XXG3.1|RLME_LEPCP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|170776944|gb|ACB35083.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Leptothrix cholodnii
SP-6]
Length = 232
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 113/210 (53%), Gaps = 6/210 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ----- 77
W D YV+ A KE YR R+A+K+ EID +RPG V+D GA PG+WSQ
Sbjct: 14 WFNDHIHDTYVKLAHKEGYRSRAAYKIKEIDETCGLIRPGQVVVDLGAVPGAWSQYVRRR 73
Query: 78 VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL 137
A + G + + G ++++D LP P++G L + DF + + +LV +L +
Sbjct: 74 FAPREAGVGGAAAGELNGRIIALDLLPFEPLEGVAFL-QGDFCEEAVLAQLVGLLDGRAV 132
Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
DVVLSDMAPN +G+ D I L + FA ++ KP + K++ G QL +
Sbjct: 133 DVVLSDMAPNLSGVEVTDAARIANLVELALEFAQSHLKPQGALVCKVFHGSGYSQLVDQF 192
Query: 198 TRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
R + VK +KP +SR SAE FL+G G K
Sbjct: 193 KRTFRVVKAVKPKASRDRSAETFLVGIGLK 222
>gi|92115197|ref|YP_575125.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Chromohalobacter
salexigens DSM 3043]
gi|122419130|sp|Q1QSY2.1|RLME_CHRSD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91798287|gb|ABE60426.1| 23S rRNA Um-2552 2'-O-methyltransferase [Chromohalobacter
salexigens DSM 3043]
Length = 210
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 116/206 (56%), Gaps = 9/206 (4%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WLK F D YVQ++ ++ YR R+++KLLE+D+K L+PG+ V+D GAAPG WSQ+A
Sbjct: 14 WLKEHFDDRYVQRSWQDGYRSRASYKLLELDAKDALLKPGMTVIDLGAAPGGWSQIAADK 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
V KG V++ D L + + G V + DFT+ ++ ++++ L+ ++D+V+S
Sbjct: 74 VGD--------KGCVIASDILEMDALAG-VTFVQGDFTEMEVLEQILVALEGRRVDLVMS 124
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +GM +D L + A PG L K++ G + + +
Sbjct: 125 DMAPNMSGMAAIDQPQAMYLVELALDLARQTLSPGGRFLAKVFQGEGFDAYLKELRGSFR 184
Query: 203 QVKILKPPSSRSHSAELFLLGRGFKG 228
+V KP +SR+ S E++LL GF G
Sbjct: 185 KVVTRKPEASRARSREVYLLAEGFHG 210
>gi|381152048|ref|ZP_09863917.1| 23S rRNA methylase [Methylomicrobium album BG8]
gi|380884020|gb|EIC29897.1| 23S rRNA methylase [Methylomicrobium album BG8]
Length = 205
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 121/212 (57%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS+ W++ F D YV+ A+K YR R+ FKL EI K L+PG++++D GAAPG W
Sbjct: 3 RTKSSNRWMQEHFDDEYVKMAQKLGYRSRAVFKLKEIQDKDHILKPGMRIVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ A +L+ + ++++D L I PIDG V + DF + + D+L+ L+
Sbjct: 63 SQYAKQLLGNPCQ--------IIALDILAIEPIDG-VEFIQGDFREQAVFDQLMQSLEGK 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G + +D L + A + L+K++ G +
Sbjct: 114 RVDLVMSDMAPNMSGSKGVDQPRSLYLGELALEMAQSVLAKDGAFLVKLFQGEGFENYCK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + +S+V I KP +SRS S E++LL RGFK
Sbjct: 174 QVQQSFSKVLIRKPKASRSRSNEVYLLARGFK 205
>gi|225629924|ref|YP_002726715.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia sp. wRi]
gi|225591905|gb|ACN94924.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia sp. wRi]
Length = 192
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 20/202 (9%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D YVQK K+ YR RSA+KL+E+D+K K + G K++D GA+PG W QVA
Sbjct: 3 DQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWLQVA---------- 52
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI---LKDDKLDVVLSDMAP 146
Q V+++D P+ I+G +F Q DI + + KD K DV+LSDMAP
Sbjct: 53 -SQKGANVVALDVKPMNAINGV------EFIQCDIINEFEILREKFKDQKFDVILSDMAP 105
Query: 147 NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKI 206
+ G++ +DH I L A + FA + G ++KI+ G + + + + VK
Sbjct: 106 ESCGLKSLDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKY 165
Query: 207 LKPPSSRSHSAELFLLGRGFKG 228
KP SSRS S E++L+ GF G
Sbjct: 166 FKPKSSRSESTEMYLVSLGFIG 187
>gi|15640656|ref|NP_230285.1| 23S rRNA methyltransferase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121730106|ref|ZP_01682507.1| cell division protein FtsJ [Vibrio cholerae V52]
gi|147673945|ref|YP_001216130.1| 23S rRNA methyltransferase J [Vibrio cholerae O395]
gi|153820567|ref|ZP_01973234.1| cell division protein FtsJ [Vibrio cholerae NCTC 8457]
gi|153830952|ref|ZP_01983619.1| cell division protein FtsJ [Vibrio cholerae 623-39]
gi|227080817|ref|YP_002809368.1| 23S rRNA methyltransferase J [Vibrio cholerae M66-2]
gi|227117011|ref|YP_002818907.1| cell division protein FtsJ [Vibrio cholerae O395]
gi|254850870|ref|ZP_05240220.1| cell division protein FtsJ [Vibrio cholerae MO10]
gi|255744147|ref|ZP_05418100.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholera CIRS 101]
gi|262155721|ref|ZP_06028845.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae INDRE 91/1]
gi|262189675|ref|ZP_06048049.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae CT 5369-93]
gi|297580762|ref|ZP_06942688.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
RC385]
gi|298500752|ref|ZP_07010555.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
MAK 757]
gi|360034452|ref|YP_004936215.1| 23S rRNA methyltransferase J [Vibrio cholerae O1 str. 2010EL-1786]
gi|379740495|ref|YP_005332464.1| 23S rRNA methyltransferase J [Vibrio cholerae IEC224]
gi|417812598|ref|ZP_12459258.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-49A2]
gi|417815461|ref|ZP_12462095.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HCUF01]
gi|417819490|ref|ZP_12466107.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HE39]
gi|417823757|ref|ZP_12470349.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HE48]
gi|418331604|ref|ZP_12942546.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-06A1]
gi|418336479|ref|ZP_12945378.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-23A1]
gi|418342861|ref|ZP_12949657.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-28A1]
gi|418348022|ref|ZP_12952758.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-43A1]
gi|418354363|ref|ZP_12957087.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-61A1]
gi|419825104|ref|ZP_14348610.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
CP1033(6)]
gi|419829182|ref|ZP_14352670.1| ftsJ-like methyltransferase family protein [Vibrio cholerae HC-1A2]
gi|419831978|ref|ZP_14355443.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-61A2]
gi|419835556|ref|ZP_14359001.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-46B1]
gi|421315726|ref|ZP_15766298.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1032(5)]
gi|421319403|ref|ZP_15769962.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1038(11)]
gi|421323450|ref|ZP_15773979.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1041(14)]
gi|421327855|ref|ZP_15778371.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1042(15)]
gi|421330862|ref|ZP_15781344.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1046(19)]
gi|421334444|ref|ZP_15784913.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1048(21)]
gi|421338341|ref|ZP_15788779.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-20A2]
gi|421342057|ref|ZP_15792464.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-43B1]
gi|421346659|ref|ZP_15797042.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-46A1]
gi|421353444|ref|ZP_15803777.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HE-45]
gi|422306043|ref|ZP_16393229.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
CP1035(8)]
gi|422890675|ref|ZP_16933089.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-40A1]
gi|422901543|ref|ZP_16936908.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-48A1]
gi|422905762|ref|ZP_16940608.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-70A1]
gi|422909150|ref|ZP_16943802.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HE-09]
gi|422912360|ref|ZP_16946887.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HFU-02]
gi|422916348|ref|ZP_16950686.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-02A1]
gi|422921860|ref|ZP_16955066.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
BJG-01]
gi|422924842|ref|ZP_16957873.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-38A1]
gi|423144163|ref|ZP_17131778.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-19A1]
gi|423148867|ref|ZP_17136227.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-21A1]
gi|423152658|ref|ZP_17139857.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-22A1]
gi|423155440|ref|ZP_17142577.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-32A1]
gi|423159303|ref|ZP_17146276.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-33A2]
gi|423163988|ref|ZP_17150776.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-48B2]
gi|423730114|ref|ZP_17703433.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-17A1]
gi|423733919|ref|ZP_17707135.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-41B1]
gi|423748278|ref|ZP_17711512.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-50A2]
gi|423817259|ref|ZP_17715290.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-55C2]
gi|423849294|ref|ZP_17719076.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-59A1]
gi|423878948|ref|ZP_17722683.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-60A1]
gi|423891835|ref|ZP_17725523.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-62A1]
gi|423926609|ref|ZP_17730138.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-77A1]
gi|423947594|ref|ZP_17733553.1| ftsJ-like methyltransferase family protein [Vibrio cholerae HE-40]
gi|423976864|ref|ZP_17737101.1| ftsJ-like methyltransferase family protein [Vibrio cholerae HE-46]
gi|423996770|ref|ZP_17740033.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-02C1]
gi|424001166|ref|ZP_17744256.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-17A2]
gi|424005324|ref|ZP_17748309.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-37A1]
gi|424008204|ref|ZP_17751154.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-44C1]
gi|424015472|ref|ZP_17755319.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-55B2]
gi|424020583|ref|ZP_17760363.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-59B1]
gi|424023333|ref|ZP_17762998.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-62B1]
gi|424026136|ref|ZP_17765753.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-69A1]
gi|424585541|ref|ZP_18025135.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1030(3)]
gi|424589881|ref|ZP_18029328.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1037(10)]
gi|424594158|ref|ZP_18033497.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1040(13)]
gi|424598099|ref|ZP_18037297.1| ribosomal RNA large subunit methyltransferase E [Vibrio Cholerae
CP1044(17)]
gi|424600856|ref|ZP_18040013.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1047(20)]
gi|424605751|ref|ZP_18044717.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1050(23)]
gi|424609588|ref|ZP_18048447.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-39A1]
gi|424612390|ref|ZP_18051198.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-41A1]
gi|424616267|ref|ZP_18054959.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-42A1]
gi|424621146|ref|ZP_18059675.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-47A1]
gi|424623951|ref|ZP_18062428.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-50A1]
gi|424628526|ref|ZP_18066832.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-51A1]
gi|424632487|ref|ZP_18070603.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-52A1]
gi|424635572|ref|ZP_18073593.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-55A1]
gi|424639486|ref|ZP_18077382.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-56A1]
gi|424644123|ref|ZP_18081878.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-56A2]
gi|424647645|ref|ZP_18085322.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-57A1]
gi|424651769|ref|ZP_18089294.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-57A2]
gi|424655716|ref|ZP_18093019.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-81A2]
gi|424658505|ref|ZP_18095762.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HE-16]
gi|429887867|ref|ZP_19369372.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E LSU rRNA Um2552 [Vibrio cholerae
PS15]
gi|440708840|ref|ZP_20889500.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae 4260B]
gi|443502664|ref|ZP_21069654.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-64A1]
gi|443506578|ref|ZP_21073369.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-65A1]
gi|443510684|ref|ZP_21077349.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-67A1]
gi|443514244|ref|ZP_21080784.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-68A1]
gi|443518059|ref|ZP_21084477.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-71A1]
gi|443522926|ref|ZP_21089167.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-72A2]
gi|443528469|ref|ZP_21094503.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-78A1]
gi|443530544|ref|ZP_21096560.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-7A1]
gi|443534319|ref|ZP_21100232.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-80A1]
gi|443537895|ref|ZP_21103752.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-81A1]
gi|449054141|ref|ZP_21732809.1| Cell division protein FtsJ/Ribosomal RNA large subunit
methyltransferase E [Vibrio cholerae O1 str. Inaba
G4222]
gi|81545365|sp|Q9KU87.1|RLME_VIBCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040344|sp|A5F937.1|RLME_VIBC3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|254809561|sp|C3LSP1.1|RLME_VIBCM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|9655071|gb|AAF93802.1| cell division protein FtsJ [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121628141|gb|EAX60673.1| cell division protein FtsJ [Vibrio cholerae V52]
gi|126508889|gb|EAZ71483.1| cell division protein FtsJ [Vibrio cholerae NCTC 8457]
gi|146315828|gb|ABQ20367.1| cell division protein FtsJ [Vibrio cholerae O395]
gi|148873565|gb|EDL71700.1| cell division protein FtsJ [Vibrio cholerae 623-39]
gi|227008705|gb|ACP04917.1| cell division protein FtsJ [Vibrio cholerae M66-2]
gi|227012461|gb|ACP08671.1| cell division protein FtsJ [Vibrio cholerae O395]
gi|254846575|gb|EET24989.1| cell division protein FtsJ [Vibrio cholerae MO10]
gi|255738087|gb|EET93479.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholera CIRS 101]
gi|262030432|gb|EEY49072.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae INDRE 91/1]
gi|262034441|gb|EEY52807.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae CT 5369-93]
gi|297535178|gb|EFH74013.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
RC385]
gi|297540533|gb|EFH76591.1| ribosomal RNA large subunit methyltransferase J [Vibrio cholerae
MAK 757]
gi|340041346|gb|EGR02313.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HE39]
gi|340043447|gb|EGR04406.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HCUF01]
gi|340043978|gb|EGR04935.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-49A2]
gi|340048386|gb|EGR09308.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HE48]
gi|341625110|gb|EGS50579.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-70A1]
gi|341626329|gb|EGS51724.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-48A1]
gi|341626909|gb|EGS52249.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-40A1]
gi|341635740|gb|EGS60446.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HE-09]
gi|341640200|gb|EGS64791.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-02A1]
gi|341640926|gb|EGS65501.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HFU-02]
gi|341647802|gb|EGS71878.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
BJG-01]
gi|341648469|gb|EGS72529.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-38A1]
gi|356420631|gb|EHH74150.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-06A1]
gi|356421491|gb|EHH74992.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-21A1]
gi|356426114|gb|EHH79448.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-19A1]
gi|356433260|gb|EHH86453.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-23A1]
gi|356434441|gb|EHH87620.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-22A1]
gi|356437906|gb|EHH90977.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-28A1]
gi|356443107|gb|EHH95939.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-32A1]
gi|356448133|gb|EHI00918.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-43A1]
gi|356450140|gb|EHI02872.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-33A2]
gi|356454139|gb|EHI06794.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-61A1]
gi|356456280|gb|EHI08888.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-48B2]
gi|356645606|gb|AET25661.1| 23S rRNA methyltransferase J [Vibrio cholerae O1 str. 2010EL-1786]
gi|378794005|gb|AFC57476.1| 23S rRNA methyltransferase J [Vibrio cholerae IEC224]
gi|395922467|gb|EJH33283.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1032(5)]
gi|395923295|gb|EJH34107.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1041(14)]
gi|395925728|gb|EJH36525.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1038(11)]
gi|395931589|gb|EJH42334.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1042(15)]
gi|395934715|gb|EJH45453.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1046(19)]
gi|395937553|gb|EJH48267.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1048(21)]
gi|395945461|gb|EJH56127.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-20A2]
gi|395945560|gb|EJH56225.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-43B1]
gi|395946807|gb|EJH57467.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-46A1]
gi|395954791|gb|EJH65400.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HE-45]
gi|395962625|gb|EJH72919.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-56A2]
gi|395963752|gb|EJH74009.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-57A2]
gi|395966573|gb|EJH76691.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-42A1]
gi|395974808|gb|EJH84322.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-47A1]
gi|395977387|gb|EJH86797.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1030(3)]
gi|395979076|gb|EJH88440.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1047(20)]
gi|408009674|gb|EKG47574.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-39A1]
gi|408015757|gb|EKG53330.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-50A1]
gi|408016532|gb|EKG54076.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-41A1]
gi|408020689|gb|EKG57976.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-52A1]
gi|408026688|gb|EKG63683.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-56A1]
gi|408027123|gb|EKG64105.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-55A1]
gi|408036122|gb|EKG72569.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1037(10)]
gi|408036702|gb|EKG73123.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-57A1]
gi|408037136|gb|EKG73542.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1040(13)]
gi|408044691|gb|EKG80587.1| ribosomal RNA large subunit methyltransferase E [Vibrio Cholerae
CP1044(17)]
gi|408046648|gb|EKG82324.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
CP1050(23)]
gi|408054989|gb|EKG89943.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HE-16]
gi|408057148|gb|EKG92012.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-81A2]
gi|408058732|gb|EKG93518.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-51A1]
gi|408611375|gb|EKK84736.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
CP1033(6)]
gi|408621816|gb|EKK94808.1| ftsJ-like methyltransferase family protein [Vibrio cholerae HC-1A2]
gi|408627325|gb|EKL00141.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-17A1]
gi|408627426|gb|EKL00234.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
CP1035(8)]
gi|408631689|gb|EKL04217.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-41B1]
gi|408636482|gb|EKL08619.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-55C2]
gi|408640842|gb|EKL12625.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-50A2]
gi|408643656|gb|EKL15373.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-60A1]
gi|408644693|gb|EKL16367.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-59A1]
gi|408651879|gb|EKL23118.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-61A2]
gi|408658678|gb|EKL29744.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-77A1]
gi|408659339|gb|EKL30390.1| ftsJ-like methyltransferase family protein [Vibrio cholerae
HC-62A1]
gi|408661583|gb|EKL32567.1| ftsJ-like methyltransferase family protein [Vibrio cholerae HE-40]
gi|408666078|gb|EKL36880.1| ftsJ-like methyltransferase family protein [Vibrio cholerae HE-46]
gi|408848339|gb|EKL88388.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-37A1]
gi|408849164|gb|EKL89194.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-17A2]
gi|408854148|gb|EKL93912.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-02C1]
gi|408858969|gb|EKL98639.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-46B1]
gi|408861828|gb|EKM01395.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-55B2]
gi|408866074|gb|EKM05463.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-44C1]
gi|408866448|gb|EKM05828.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-59B1]
gi|408873455|gb|EKM12652.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-62B1]
gi|408881295|gb|EKM20199.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-69A1]
gi|429225035|gb|EKY31321.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E LSU rRNA Um2552 [Vibrio cholerae
PS15]
gi|439975581|gb|ELP51693.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae 4260B]
gi|443433055|gb|ELS75575.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-64A1]
gi|443436844|gb|ELS82960.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-65A1]
gi|443440406|gb|ELS90094.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-67A1]
gi|443444501|gb|ELS97774.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-68A1]
gi|443448337|gb|ELT04971.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-71A1]
gi|443451112|gb|ELT11375.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-72A2]
gi|443453043|gb|ELT16876.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-78A1]
gi|443458745|gb|ELT26140.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-7A1]
gi|443462477|gb|ELT33515.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-80A1]
gi|443466720|gb|ELT41377.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HC-81A1]
gi|448266376|gb|EMB03603.1| Cell division protein FtsJ/Ribosomal RNA large subunit
methyltransferase E [Vibrio cholerae O1 str. Inaba
G4222]
Length = 209
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +AKK+ YR R+ FK+ EI +K K L+ G+ V+D GAAPG WSQ
Sbjct: 9 SSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQF 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G V++ D LP+ I G L + DF + + + L+ ++ D +D
Sbjct: 69 AAKVVGEGGR--------VIACDLLPMESIAGVSFL-QGDFREEAVLNALLDRIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G +
Sbjct: 120 VVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDDYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + VKI KP SSRS S E+F++ G+KG
Sbjct: 177 AVRDLFKVVKIRKPDSSRSRSREVFIVATGYKG 209
>gi|229520927|ref|ZP_04410349.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae TM 11079-80]
gi|229342160|gb|EEO07156.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae TM 11079-80]
Length = 239
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +AKK+ YR R+ FK+ EI +K K L+ G+ V+D GAAPG WSQ
Sbjct: 39 SSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQF 98
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G V++ D LP+ I G L + DF + + + L+ ++ D +D
Sbjct: 99 AAKVVGEGGR--------VIACDLLPMESIAGVSFL-QGDFREEAVLNALLDRIQPDMVD 149
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G +
Sbjct: 150 VVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDDYVK 206
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + VKI KP SSRS S E+F++ G+KG
Sbjct: 207 AVRDLFKVVKIRKPDSSRSRSREVFIVATGYKG 239
>gi|156975670|ref|YP_001446577.1| 23S rRNA methyltransferase J [Vibrio harveyi ATCC BAA-1116]
gi|269961973|ref|ZP_06176328.1| cell division protein FtsJ [Vibrio harveyi 1DA3]
gi|424033924|ref|ZP_17773335.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HENC-01]
gi|424047601|ref|ZP_17785160.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HENC-03]
gi|189040345|sp|A7MZH4.1|RLME_VIBHB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|156527264|gb|ABU72350.1| hypothetical protein VIBHAR_03405 [Vibrio harveyi ATCC BAA-1116]
gi|269833296|gb|EEZ87400.1| cell division protein FtsJ [Vibrio harveyi 1DA3]
gi|408874037|gb|EKM13220.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HENC-01]
gi|408883839|gb|EKM22606.1| ribosomal RNA large subunit methyltransferase E [Vibrio cholerae
HENC-03]
Length = 209
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 117/213 (54%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+ G+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQTKDKLLKSGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K++ G +++ D LP+ PI G L + DF + D L+ ++ +D
Sbjct: 69 AAKIIGEEGQ--------IIACDLLPMDPIAGVSFL-QGDFRDEAVLDALLERIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQFVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDMFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|146283283|ref|YP_001173436.1| cell division protein FtsJ [Pseudomonas stutzeri A1501]
gi|145571488|gb|ABP80594.1| cell division protein FtsJ [Pseudomonas stutzeri A1501]
Length = 211
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL DP+V++A+K+ R RS++KL+E++ K K +RPG+ V+D G+APG W
Sbjct: 8 RSKSSRRWLDEHVNDPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGW 67
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +V KG VL+ D LP+ +D V + DFT+ + +++ +L
Sbjct: 68 SQVAGGIVGE--------KGRVLATDILPMGGLDN-VDFVQGDFTEDAVFQQILDMLDGR 118
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+++SD+APN +G+ D L + KPG + ++K++ G + +
Sbjct: 119 QPDLIVSDIAPNISGVAAADQAASMYLVELTLDMVRQVLKPGGNYVVKVFQGEGSDEFLK 178
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V I KP +SR S E++L+ +GFKG
Sbjct: 179 DVRSSFEKVVIRKPEASRPRSREVYLVAKGFKG 211
>gi|374366302|ref|ZP_09624383.1| ribosomal RNA large subunit methyltransferase E [Cupriavidus
basilensis OR16]
gi|373102086|gb|EHP43126.1| ribosomal RNA large subunit methyltransferase E [Cupriavidus
basilensis OR16]
Length = 221
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 117/218 (53%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNKFNQAWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDI----QDRLV 129
WSQ A KL S G V+++D LP+ + V + DF + D+ +D ++
Sbjct: 62 WSQYARNKLAASARAKDGGIDGAVIAIDLLPMEAV-ADVTFIQGDFREEDVFRQLEDVVL 120
Query: 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
K+D+VLSDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 QASGGAKIDLVLSDMAPNLSGVAFADAARIDYLCDLALEFAQAHLKPEGSLLVKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E F+LGR K
Sbjct: 181 YSQIVEKFKRQFKVVAKRKPKASRDKSSETFILGRFLK 218
>gi|339495068|ref|YP_004715361.1| cell division protein FtsJ [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|386021709|ref|YP_005939733.1| cell division protein FtsJ [Pseudomonas stutzeri DSM 4166]
gi|158514184|sp|A4VNP3.2|RLME_PSEU5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|327481681|gb|AEA84991.1| cell division protein FtsJ [Pseudomonas stutzeri DSM 4166]
gi|338802440|gb|AEJ06272.1| cell division protein FtsJ [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 206
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL DP+V++A+K+ R RS++KL+E++ K K +RPG+ V+D G+APG W
Sbjct: 3 RSKSSRRWLDEHVNDPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +V KG VL+ D LP+ +D V + DFT+ + +++ +L
Sbjct: 63 SQVAGGIVGE--------KGRVLATDILPMGGLDN-VDFVQGDFTEDAVFQQILDMLDGR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+++SD+APN +G+ D L + KPG + ++K++ G + +
Sbjct: 114 QPDLIVSDIAPNISGVAAADQAASMYLVELTLDMVRQVLKPGGNYVVKVFQGEGSDEFLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V I KP +SR S E++L+ +GFKG
Sbjct: 174 DVRSSFEKVVIRKPEASRPRSREVYLVAKGFKG 206
>gi|392422130|ref|YP_006458734.1| cell division protein FtsJ [Pseudomonas stutzeri CCUG 29243]
gi|452748390|ref|ZP_21948170.1| cell division protein FtsJ [Pseudomonas stutzeri NF13]
gi|390984318|gb|AFM34311.1| cell division protein FtsJ [Pseudomonas stutzeri CCUG 29243]
gi|452007796|gb|EME00049.1| cell division protein FtsJ [Pseudomonas stutzeri NF13]
Length = 206
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 120/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL DP+V++A+K+ R RS++KL+E++ K K +RPG+ V+D G+APG W
Sbjct: 3 RSKSSRRWLDEHVNDPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +V KG VL+ D LP+ +D V + DFT+ + +++ +L
Sbjct: 63 SQVAGGIVGE--------KGRVLATDILPMGGLDN-VDFVQGDFTEDAVFQQILDMLDGR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+++SD+APN +G+ D L + KPG + ++K++ G +
Sbjct: 114 QPDLIVSDIAPNISGVAAADQAASMYLVELTLDMVRQVLKPGGNYVVKVFQGEGSDDFLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V I KP +SR S E++L+ +GFKG
Sbjct: 174 DVRSSFEKVSIRKPEASRPRSREVYLVAKGFKG 206
>gi|145298036|ref|YP_001140877.1| 23S ribosomal RNA methyltransferase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418361758|ref|ZP_12962405.1| 23S ribosomal RNA methyltransferase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|158514048|sp|A4SJQ7.1|RLME_AERS4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|142850808|gb|ABO89129.1| 23S ribosomal RNA methyltransferase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356686874|gb|EHI51464.1| 23S ribosomal RNA methyltransferase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 209
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 116/214 (54%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F D YV+KA+K R R+ FK+ EI K K LR G+ V+D GAAPG
Sbjct: 4 KKRSPSSTRWLKEHFDDQYVKKAQKLGLRSRAVFKIDEIQGKDKLLRTGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ AV+ V +G V++ D LP+ PI G L + DF + + L+ +
Sbjct: 64 GWSQFAVEQVGDNGR--------VIACDILPMDPIAGVDFL-QGDFREETVLGALLDRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DK+DVV+SDMAPN +G +++D L + + ++K++ G
Sbjct: 115 PDKVDVVMSDMAPNMSGTQQVDQARAMYLIELALDMCNQVLRTNGSFVVKVFQGEGFDAY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
I + +S VKI KP SSR+ S E++++ GFK
Sbjct: 175 LNEIRKLFSAVKIRKPDSSRARSREVYIVATGFK 208
>gi|307730492|ref|YP_003907716.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
CCGE1003]
gi|307585027|gb|ADN58425.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
CCGE1003]
Length = 220
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 119/209 (56%), Gaps = 5/209 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA-VK 81
WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D G++PGSWSQ A K
Sbjct: 10 WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYARNK 69
Query: 82 LVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
L D+++ G+ ++++D LP+ P+ V + DF + + +L I+ + ++D
Sbjct: 70 LAKGAQRDAEREGGIDGTIIALDILPMEPV-ADVHFIQGDFREDSVLSQLEEIVGERQVD 128
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+ D I L + F+ + KP L+K + G Q+ E
Sbjct: 129 LVISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFK 188
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
R + V KP +SR S+E F+LG+ K
Sbjct: 189 RQFKVVAARKPKASRDKSSETFILGKHLK 217
>gi|229505742|ref|ZP_04395252.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae BX 330286]
gi|229509225|ref|ZP_04398710.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae B33]
gi|229512898|ref|ZP_04402365.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae TMA 21]
gi|229519566|ref|ZP_04409009.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae RC9]
gi|229525289|ref|ZP_04414694.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae bv. albensis VL426]
gi|229530441|ref|ZP_04419829.1| cell division protein ftsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae 12129(1)]
gi|229608853|ref|YP_002879501.1| 23S rRNA methyltransferase J [Vibrio cholerae MJ-1236]
gi|229332214|gb|EEN97702.1| cell division protein ftsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae 12129(1)]
gi|229338870|gb|EEO03887.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae bv. albensis VL426]
gi|229344255|gb|EEO09230.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae RC9]
gi|229350147|gb|EEO15100.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae TMA 21]
gi|229353797|gb|EEO18733.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae B33]
gi|229357965|gb|EEO22882.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae BX 330286]
gi|229371508|gb|ACQ61931.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio cholerae MJ-1236]
Length = 239
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +AKK+ YR R+ FK+ EI +K K L+ G+ V+D GAAPG WSQ
Sbjct: 39 SSTRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQF 98
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G V++ D LP+ I G L + DF + + + L+ ++ D +D
Sbjct: 99 AAKVVGEGGR--------VIACDLLPMESIAGVSFL-QGDFREEAVLNALLDRIQPDMVD 149
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G +
Sbjct: 150 VVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDDYVK 206
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + VKI KP SSRS S E+F++ G+KG
Sbjct: 207 AVRDLFKVVKIRKPDSSRSRSREVFIVATGYKG 239
>gi|428180442|gb|EKX49309.1| hypothetical protein GUITHDRAFT_104837 [Guillardia theta CCMP2712]
Length = 255
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 115/210 (54%), Gaps = 9/210 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL D +V++A+++ +R R+A+K+L+I K +PG VLD G+APGSWSQV
Sbjct: 8 SSKRWLNEHVNDKWVKQAQQDGWRSRAAYKILQIQEKDSIFKPGQLVLDLGSAPGSWSQV 67
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V P G V++ D L + P+ G V + DFT+ + +L +L + D
Sbjct: 68 ASKRV--------LPTGRVIATDILEMRPLPG-VEFVQGDFTEDTTRGQLSVMLAGARAD 118
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMAPN +G +D L + K G ++K++ G + +
Sbjct: 119 VVLSDMAPNLSGNALLDQGRAYNLVSLAFFMMEEWLKRGGKAVVKVFRGEGYDECLNEMR 178
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+++VK+ KP +SR S E+FL+G GFKG
Sbjct: 179 ARFNEVKVRKPEASRGRSTEIFLVGIGFKG 208
>gi|221134032|ref|ZP_03560337.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Glaciecola sp. HTCC2999]
Length = 206
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 117/209 (55%), Gaps = 9/209 (4%)
Query: 20 SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA 79
S W++ DPYV+KA+ + YR R+++KL+EI+ K + +RPG V+D G+APG WSQV
Sbjct: 7 SKKWMEDHLNDPYVKKAQVDGYRSRASYKLIEINEKDQLVRPGNIVMDLGSAPGGWSQVL 66
Query: 80 VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV 139
+V G V++ D LP+ I G L + DFT + + ++ L DD++D
Sbjct: 67 APMVGD--------AGRVIASDILPMDSIVGVSFL-QGDFTDEAVYNAILKELGDDRVDT 117
Query: 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR 199
V+SDMAPN +G D L + A KPG K++ G + + + +
Sbjct: 118 VVSDMAPNLSGNNTTDQYSSIYLVELALDMARNVLKPGGGFCAKVFQGVGYEEYVKEVRQ 177
Query: 200 FYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+S+V I KP +SR S E++++G+GFKG
Sbjct: 178 SFSKVIIRKPAASRPRSREVYVVGKGFKG 206
>gi|384082738|ref|ZP_09993913.1| 23S rRNA methyltransferase J [gamma proteobacterium HIMB30]
Length = 209
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 120/214 (56%), Gaps = 11/214 (5%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK F DPYVQKA+ E R R++FKL E+ +K + ++ G V+D GAAPG W
Sbjct: 3 RSKSSGRWLKEHFDDPYVQKAQAEGRRSRASFKLEEVQAKDQLIKSGDVVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-DGAVVLSKCDFTQPDIQDRLVTILKD 134
+++ + N G P G V ++D + + + D ++L DFT+ + DRL+ L
Sbjct: 63 TEL---VANWTG-----PSGRVFALDIIAMDSVADVEIILG--DFTEEAVLDRLMQSLNG 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
++DVVLSDMAPN +G + +D L + FA PG IK++ G +
Sbjct: 113 VRVDVVLSDMAPNLSGNKSVDQPRAMYLCELALDFARQTLNPGGALFIKVFQGEGFDEFF 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+++ +S +K KP +SRS S E +LL GF+G
Sbjct: 173 QALRTDFSVLKTRKPDASRSRSRETYLLAMGFRG 206
>gi|430805045|ref|ZP_19432160.1| 23S rRNA methyltransferase J [Cupriavidus sp. HMR-1]
gi|429502746|gb|ELA01052.1| 23S rRNA methyltransferase J [Cupriavidus sp. HMR-1]
Length = 221
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 120/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 2 AKNKFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDDQDKLIQPGQVIVDLGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ A KL S + G V+++D LP+ P+ V + DF + ++ +L ++
Sbjct: 62 WSQYARNKLAASPRAKDGRIDGAVVAIDILPMEPV-ADVTFIQGDFREEEVFRQLEQVVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D ++D+V+SDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 DASGGSRIDLVISDMAPNLSGVASADAARIEYLCDLALDFAQAHLKPEGSLLVKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E F+LGR K
Sbjct: 181 YSQIVEKFKRQFKVVASRKPKASRDKSSETFILGRYLK 218
>gi|94311127|ref|YP_584337.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34]
gi|143461257|sp|Q1LLA8.1|RLME_RALME RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|93354979|gb|ABF09068.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34]
Length = 221
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 120/218 (55%), Gaps = 6/218 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K ++PG ++D GAAPGS
Sbjct: 2 AKNKFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDDQDKLIQPGQVIVDLGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ A KL S + G V+++D LP+ P+ V + DF + ++ +L ++
Sbjct: 62 WSQYARNKLAASPRAKDGRIDGAVVAIDILPMEPV-ADVTFIQGDFREEEVFRQLEQVVL 120
Query: 134 D----DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189
D ++D+V+SDMAPN +G+ D I L + FA + KP L+K + G
Sbjct: 121 DASGGSRIDLVISDMAPNLSGVASADAARIEYLCDLALDFAQAHLKPEGSLLVKCFHGSG 180
Query: 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E R + V KP +SR S+E F+LGR K
Sbjct: 181 YSQIVEKFKRQFKVVASRKPKASRDKSSETFILGRYLK 218
>gi|431926500|ref|YP_007239534.1| 23S rRNA methylase [Pseudomonas stutzeri RCH2]
gi|431824787|gb|AGA85904.1| 23S rRNA methylase [Pseudomonas stutzeri RCH2]
Length = 206
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 121/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL DP+V++A+K+ R RS++KL+E++ K K +RPG+ V+D G+APG W
Sbjct: 3 RSKSSRRWLDEHVNDPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +V KG VL+ D LP+ +D V + DFT+ + +++ +L
Sbjct: 63 SQVAGGIVGE--------KGKVLATDILPMGGLDN-VDFVQGDFTEDAVFQQILDMLDGR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+++SD+APN +G+ D L + KPG + ++K++ G + +
Sbjct: 114 QPDLIVSDIAPNISGVAAADQAASMYLVELTLDMVRQVLKPGGNYVVKVFQGEGSDEFLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V I KP +SR S E++L+ +GFKG
Sbjct: 174 DVRSSFEKVVIRKPEASRPRSREVYLVAKGFKG 206
>gi|406940544|gb|EKD73275.1| hypothetical protein ACD_45C00380G0007 [uncultured bacterium]
Length = 204
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 9/206 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+ F+DPYV++AK+ +R R+ +KLLEI + K +PG+ V+D GAAPG WSQ+
Sbjct: 6 SSRRWLREHFSDPYVKQAKQMGFRSRAIYKLLEIQERDKLFKPGMTVIDLGAAPGGWSQL 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
LV G V ++D LP+ P+ G V DFTQ ++ + L+ L + K D
Sbjct: 66 VANLVGKQGQ--------VFAIDILPMAPLPG-VKFILGDFTQAEVVEELLKRLGEAKAD 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
V+SDMAPN +G+ +D LA A L+K++ G +
Sbjct: 117 WVISDMAPNMSGVDSVDQSRSLALAELAFDLAQHVLHKQGGLLVKVFQGEGFDAFLRMLR 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGR 224
++ +V I KP +S++ S E++LL R
Sbjct: 177 HYFKKVIIRKPKASKNRSREVYLLAR 202
>gi|257454690|ref|ZP_05619946.1| ribosomal RNA large subunit methyltransferase J [Enhydrobacter
aerosaccus SK60]
gi|257448000|gb|EEV22987.1| ribosomal RNA large subunit methyltransferase J [Enhydrobacter
aerosaccus SK60]
Length = 210
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 120/205 (58%), Gaps = 9/205 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W+K D YV+ A+++ YR R+A+KLLEI+ K++ ++ G+ V+D G+APGSWSQV
Sbjct: 13 SSRAWMKEHIDDHYVKLAQRDGYRARAAYKLLEINEKLQLIKKGMTVVDLGSAPGSWSQV 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV G +++ D LP+ ++ V + DF + + D ++ + D K++
Sbjct: 73 AGKLVGDTGK--------LIASDILPMDTLEN-VTFIQGDFREQAVFDNIMAEVADKKVE 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMAPN +G +D + L + FA G +IK++ G L +++
Sbjct: 124 VVLSDMAPNTSGFSAVDQPRMIYLCELAMDFAEQVLPEGGTLVIKVFQGEGSDALRKNMQ 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
+ +S+V+ +KP +SR+ S E++ +
Sbjct: 184 QRFSKVRSIKPAASRARSKEMYWIA 208
>gi|148979038|ref|ZP_01815283.1| 23S rRNA methyltransferase J [Vibrionales bacterium SWAT-3]
gi|417948895|ref|ZP_12592036.1| 23S rRNA methyltransferase J [Vibrio splendidus ATCC 33789]
gi|145962011|gb|EDK27299.1| 23S rRNA methyltransferase J [Vibrionales bacterium SWAT-3]
gi|342809026|gb|EGU44158.1| 23S rRNA methyltransferase J [Vibrio splendidus ATCC 33789]
Length = 209
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLSPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V +G +++ D LP+ PI G L + DF + + + L+ ++ + +D
Sbjct: 69 AAKIVGDNGQ--------IIACDLLPMDPIAGVSFL-QGDFREDAVLEALLERIQPNMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLATD---GSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VK+ KP SSR+ S E+F++ G+KG
Sbjct: 177 DVREMFKTVKVRKPDSSRARSREVFIVATGYKG 209
>gi|89072568|ref|ZP_01159140.1| 23S rRNA methylase [Photobacterium sp. SKA34]
gi|90580530|ref|ZP_01236335.1| 23S rRNA methylase [Photobacterium angustum S14]
gi|89051672|gb|EAR57125.1| 23S rRNA methylase [Photobacterium sp. SKA34]
gi|90438188|gb|EAS63374.1| 23S rRNA methylase [Photobacterium angustum S14]
Length = 209
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 15/217 (6%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F D YVQ+A+K YR R+ FK+ EI +K K L+PG+ V+D GAAPG
Sbjct: 4 KKQSGSSGRWLKEHFDDKYVQEAQKRGYRSRAFFKIEEIQNKDKLLKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ A ++V S G V++ D LP+ + G L + DF + + D L+ ++
Sbjct: 64 GWSQYAAEIVGSEGQ--------VIACDILPMDSLPGVSFL-QGDFREEAVLDALLDRIQ 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
D +DVV+SDMAPN +G D + +LA+ + R + P +K++ G
Sbjct: 115 PDMVDVVMSDMAPNMSGNLASDQPRAMYLVELALDMCRQVLA---PNGSFTVKVFQGEGF 171
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q I + VKI KP SSR S E++++ G+K
Sbjct: 172 DQYLAEIRSMFKVVKIRKPDSSRDRSREVYIVATGYK 208
>gi|410722053|ref|ZP_11361368.1| 23S rRNA methylase [Methanobacterium sp. Maddingley MBC34]
gi|410597859|gb|EKQ52466.1| 23S rRNA methylase [Methanobacterium sp. Maddingley MBC34]
Length = 206
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 125/207 (60%), Gaps = 12/207 (5%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
W K + + Y +KAKK++YR R++FKLL+++ K K ++ G V+D GAAPG WSQVA++
Sbjct: 4 WNKERKNEEYYKKAKKQDYRSRASFKLLQLNRKYKIIKKGDSVIDLGAAPGGWSQVALEA 63
Query: 83 VNSHGYDSKQPKGLVLSVD--KLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVV 140
V G D GLV++VD ++ +P + + K DFT + D + L+ K V+
Sbjct: 64 V---GED-----GLVVAVDLNRMKSFPEENFWSI-KGDFTHEETLDEIKRTLQG-KAQVI 113
Query: 141 LSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200
+SD AP +G++++D T LA+ V++ + T K + ++K++ G P+L +
Sbjct: 114 ISDAAPKLSGIKDLDQLRCTDLALTVLQISDTILKYKGNIIMKVFQGEGYPELLAEVKTK 173
Query: 201 YSQVKILKPPSSRSHSAELFLLGRGFK 227
+ VK KPPSSR S E++++GRGF+
Sbjct: 174 FQTVKTTKPPSSRKKSGEMYVVGRGFR 200
>gi|417319037|ref|ZP_12105595.1| 23S rRNA methyltransferase J [Vibrio parahaemolyticus 10329]
gi|328474227|gb|EGF45032.1| 23S rRNA methyltransferase J [Vibrio parahaemolyticus 10329]
Length = 209
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G +++ D LP+ PI G L + DF + + L+ ++ +D
Sbjct: 69 AAKIVGDSGQ--------IIACDLLPMDPIAGVSFL-QGDFRDDAVLEALLDRIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDMFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|113969362|ref|YP_733155.1| 23S rRNA methyltransferase J [Shewanella sp. MR-4]
gi|117919471|ref|YP_868663.1| 23S rRNA methyltransferase J [Shewanella sp. ANA-3]
gi|123325253|sp|Q0HLG9.1|RLME_SHESM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|143461679|sp|A0KTY8.1|RLME_SHESA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|113884046|gb|ABI38098.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sp. MR-4]
gi|117611803|gb|ABK47257.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella sp. ANA-3]
Length = 209
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS W++ F D YV+ A+K R R+AFKL E+ K + +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSTRWMQEHFDDHYVKLAQKRGLRSRAAFKLEELQEKDQLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ+AVKL KG V++ D LP+ PI G L + DF + + + L+T +
Sbjct: 64 GWSQIAVKLTGD--------KGKVIACDILPMDPIVGVDFL-QGDFREEKVLEALLTRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DK+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 ADKVDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + VK KP SSR+ S E++L+ G+K
Sbjct: 175 MKAVKDAFKVVKTRKPDSSRARSREVYLVATGYK 208
>gi|78485156|ref|YP_391081.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomicrospira crunogena
XCL-2]
gi|123555692|sp|Q31HG6.1|RLME_THICR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|78363442|gb|ABB41407.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomicrospira crunogena
XCL-2]
Length = 206
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 111/212 (52%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WLK F D YV KAK++ +R R+ +KL EID K + G+ V+D GAAPG W
Sbjct: 3 RSKSSAGWLKEHFDDYYVNKAKQDGWRSRAIYKLQEIDEKDQLFSKGMTVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ G V ++D LP+ P G V + DF + D+ L+ L
Sbjct: 63 SQWTTHQTGDEGR--------VFALDILPVEPFAG-VTFIQGDFQEDDVYQSLLDALDGR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN TG + +D L + A KP D L+K++ G QL +
Sbjct: 114 EVDLVMSDMAPNMTGNKGVDIPRAMYLVELCVDLADQVLKPNGDLLMKVFQGEGYDQLLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
S+ Y +V KP +SR S E++LL RG K
Sbjct: 174 SLREKYQKVLTRKPKASRPRSKEIYLLARGKK 205
>gi|339489448|ref|YP_004703976.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida S16]
gi|338840291|gb|AEJ15096.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida S16]
Length = 188
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 112/196 (57%), Gaps = 9/196 (4%)
Query: 33 VQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQ 92
+++A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG WSQV +L+ G +
Sbjct: 1 MKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIGGQG---RL 57
Query: 93 PKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMR 152
+L +D +P V + DFTQ ++ R++ + D +D+V+SDMAPN +G
Sbjct: 58 IASDILEMDSIP------DVTFIQGDFTQDEVLQRILEAVGDSHVDLVISDMAPNMSGTP 111
Query: 153 EMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSS 212
+D L + A KPG D LIKI+ G + + + +V++ KP SS
Sbjct: 112 AVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDVYLKDVRSKFDKVQMRKPSSS 171
Query: 213 RSHSAELFLLGRGFKG 228
R S E +LLGRGFKG
Sbjct: 172 RDRSREQYLLGRGFKG 187
>gi|21672644|ref|NP_660711.1| cell division protein FtsJ [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
gi|25091195|sp|Q8K9G7.1|RLME_BUCAP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|21623279|gb|AAM67922.1| cell division protein FtsJ [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
Length = 206
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 113/212 (53%), Gaps = 9/212 (4%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
+ K K +SS+ WL F D YV++AKK+ R RS FKL EID + +PG+ VLD G++
Sbjct: 2 ISKKKSNSSNRWLSEHFQDQYVKEAKKQKIRSRSWFKLEEIDKNNRLFKPGMNVLDLGSS 61
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
PG WSQ A K + GY +L+ D LP+ I G V + DF + ++T
Sbjct: 62 PGGWSQYAAKKIGKKGY--------ILACDILPMKKIKG-VDFFQGDFCNKKTLNLILTN 112
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L + L++++SDMAPN TG +D I ++ V + L+K + G
Sbjct: 113 LSNVNLNLIMSDMAPNITGCSSIDMPRIIEICKTVFTISDHVLSRNGVVLVKSFQGEGFN 172
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
+ + +S++KI KP +SRS S E+F+L
Sbjct: 173 EFFAQMKNLFSKIKICKPKTSRSRSREIFMLA 204
>gi|85374883|ref|YP_458945.1| 23S rRNA methylase [Erythrobacter litoralis HTCC2594]
gi|122543835|sp|Q2N843.1|RLME_ERYLH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|84787966|gb|ABC64148.1| 23S rRNA methylase [Erythrobacter litoralis HTCC2594]
Length = 220
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 12/224 (5%)
Query: 6 GPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
G ++K K + SS WL+RQ DPYV++AK + YR R+A+KL+E+D K L+ +V
Sbjct: 9 GKRVKTARK-RSASSTRWLERQLNDPYVKQAKADGYRSRAAYKLIELDGKFGILKGASRV 67
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
+D G APG W+QV K+ +PK ++ +D L PI+G +L + DF +
Sbjct: 68 VDLGIAPGGWAQVVRKV---------RPKAGIVGIDLLETEPIEGVTIL-QMDFMADEAP 117
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L L D D+V+SDMA N G ++ DH L A FA+ + G L K+
Sbjct: 118 AGLEAAL-DGPPDLVMSDMAANTVGHKQTDHLRTMGLVEAAAWFAIETLEEGGTFLAKVL 176
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
G L + + + VK KPP+SR S+E +++ +GFKG+
Sbjct: 177 AGGTDNDLLKLLKSHFKTVKHAKPPASRKGSSEWYVVAQGFKGR 220
>gi|383936855|ref|ZP_09990274.1| ribosomal RNA large subunit methyltransferase E [Rheinheimera
nanhaiensis E407-8]
gi|383702092|dbj|GAB60365.1| ribosomal RNA large subunit methyltransferase E [Rheinheimera
nanhaiensis E407-8]
Length = 209
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 116/214 (54%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F D +VQKA+K R R+AFKL EI+ K K +R G+ V+D G+APG
Sbjct: 4 KKRSASSTRWLKEHFDDHFVQKAQKLGLRSRAAFKLEEINQKDKLIRSGMTVVDLGSAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SWSQ V V S G V++ D LP+ PI+G L + DF + + + L++ +
Sbjct: 64 SWSQFCVGQVGS--------GGTVIACDILPMDPINGVSFL-QGDFREEAVLEALLSRIG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+DVVLSDMAPN +G D L + K ++K++ G
Sbjct: 115 GQNVDVVLSDMAPNMSGNDTTDQARSMYLVELALDMCHKVLKQNGSFVVKVFQGEGFEHY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ ++ VKI KP SSR+ S+E +++ GFK
Sbjct: 175 VKAVREAFNVVKIRKPESSRARSSETYIVATGFK 208
>gi|27365050|ref|NP_760578.1| 23S rRNA methyltransferase [Vibrio vulnificus CMCP6]
gi|37680900|ref|NP_935509.1| 23S rRNA methyltransferase J [Vibrio vulnificus YJ016]
gi|320155433|ref|YP_004187812.1| cell division protein FtsJ [Vibrio vulnificus MO6-24/O]
gi|81448574|sp|Q8DBW7.1|RLME_VIBVU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|81756680|sp|Q7MI01.1|RLME_VIBVY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|27361196|gb|AAO10105.1| Ribosomal RNA large subunit methyltransferase J [Vibrio vulnificus
CMCP6]
gi|37199650|dbj|BAC95480.1| 23S rRNA methylase [Vibrio vulnificus YJ016]
gi|319930745|gb|ADV85609.1| cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Vibrio vulnificus MO6-24/O]
Length = 209
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+++ YR R+ FKL EI K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSSRWLKEHFDDKYANEARRKGYRSRAIFKLEEIQQKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A+ +V G V++ D LP+ I G L + DF + + + L+ ++ D +D
Sbjct: 69 AIGVVGDSGR--------VIACDILPMDSIAGVSFL-QGDFREDAVLEALLERIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G + +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDEYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRNMFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|359779751|ref|ZP_09282978.1| cell division protein FtsJ [Pseudomonas psychrotolerans L19]
gi|359372367|gb|EHK72931.1| cell division protein FtsJ [Pseudomonas psychrotolerans L19]
Length = 206
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 120/213 (56%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL DPYV++A+K+ R RS++KL+E++ K K +RPG+ V+D G+APG W
Sbjct: 3 RSKSSRRWLDEHVNDPYVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +V KG V++ D LP+ +D V + DFT + +++ +L
Sbjct: 63 SQVAGGIVGD--------KGRVVATDILPMGALDN-VDFVQGDFTDDAVFQKILGVLDGR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+++SD+APN +G+ D L + KPG + ++K++ G +
Sbjct: 114 QPDLIVSDIAPNISGVAAADQAAAMYLVELTLDMVRQVLKPGGNYVVKVFQGEGSDVFLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V I KP +SR S E++L+G+GFKG
Sbjct: 174 DVRTSFEKVSIRKPEASRPRSREVYLVGKGFKG 206
>gi|238026783|ref|YP_002911014.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia glumae
BGR1]
gi|237875977|gb|ACR28310.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia glumae
BGR1]
Length = 220
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 119/217 (54%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGS
Sbjct: 2 AKNRFNQSWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQP---KGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+++ G+++++D LP+ P+ V + DF + + +L
Sbjct: 62 WSQYARNKLALGKNRDAQREGGIDGMIVALDMLPMEPV-ADVHFIQGDFREDAVLHQLEA 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L +D+V+SDMAPN +G+ D I + + F+ + KP L+K + G
Sbjct: 121 LLDGRVVDLVISDMAPNLSGVASADAARIEHVCDLALEFSQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKHQFRTVAPRKPKASRDKSSETFILGRHLK 217
>gi|407790498|ref|ZP_11137592.1| 23S rRNA methyltransferase J [Gallaecimonas xiamenensis 3-C-1]
gi|407204046|gb|EKE74028.1| 23S rRNA methyltransferase J [Gallaecimonas xiamenensis 3-C-1]
Length = 209
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 116/214 (54%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F DPYV +A+K R R+ FKL EI K K +R G+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLKEHFDDPYVLEAQKRGLRSRAVFKLEEIQQKDKLIRAGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ+A +LV G V++ D LP+ P+ G L + DF + + + L+ +
Sbjct: 64 GWSQLASELVGEQGE--------VIACDILPMDPLPGVAFL-QGDFREEAVLNALLERIG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
++DVVLSDMAPN +G + +D L + PG +K++ G
Sbjct: 115 GRQVDVVLSDMAPNMSGTKGVDQPRAMYLVELALDMCHQVLAPGGSFAVKVFMGEGFEDY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ ++ VK KP SSRS S+E++++ G+K
Sbjct: 175 IKAVRAAFTTVKSRKPDSSRSRSSEVYIVATGYK 208
>gi|254427497|ref|ZP_05041204.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax sp.
DG881]
gi|196193666|gb|EDX88625.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax sp.
DG881]
Length = 208
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 116/212 (54%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DP+V KA+++ YR R++FKLLE+ K + RPG+ VLD GAAPG W
Sbjct: 6 RSKTSKAWLKEHFNDPWVAKAQEQGYRSRASFKLLEMHEKDRLFRPGMTVLDLGAAPGGW 65
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +L+ G +L++D LP V + DF + I ++++ L D
Sbjct: 66 SQVAGQLIGGKGTVIASD---ILAMDALP------DVTFIEGDFREDAIYEQILASLGDR 116
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ D+V+SDMAPN +G +D LA + A +P L+K++ G +
Sbjct: 117 RADLVMSDMAPNMSGNSAVDQPRAMYLAELALDMAERVLEPDGLFLVKVFQGEGFEDYRK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ + +V KP +SR+ S E++ LG G K
Sbjct: 177 ALQSRFKRVVSRKPAASRARSTEVYQLGFGLK 208
>gi|408373089|ref|ZP_11170787.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax
hongdengensis A-11-3]
gi|407766927|gb|EKF75366.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax
hongdengensis A-11-3]
Length = 208
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 115/205 (56%), Gaps = 9/205 (4%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WLK F DP+V KA+ E YR R+++KLLE+ K K LRPG+ VLD GAAPG WSQVA +L
Sbjct: 13 WLKEHFNDPWVAKAQAEGYRSRASYKLLEMHEKDKLLRPGMSVLDLGAAPGGWSQVAGQL 72
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
V S G +L++D LP D +L DF + + ++++ L D ++D+V+S
Sbjct: 73 VGSRGTVVASD---ILAMDALP----DVTFILG--DFREDAVYEQILAALGDRRVDLVMS 123
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G +D LA + A +P L+K++ G +++ +
Sbjct: 124 DMAPNMSGNNAVDLPRAMYLAELALDMAERVLEPDGHFLVKVFQGEGFDAYRKTLQDRFR 183
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
+V KP +SR+ S E++ L G K
Sbjct: 184 RVVSRKPAASRARSTEVYQLATGLK 208
>gi|374620624|ref|ZP_09693158.1| 23S rRNA methylase [gamma proteobacterium HIMB55]
gi|374303851|gb|EHQ58035.1| 23S rRNA methylase [gamma proteobacterium HIMB55]
Length = 207
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 116/212 (54%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS WLK D YVQ+A+ E YR R+ +KLLE++ K KF++PG+ V+D G+APG W
Sbjct: 4 KRGSSKAWLKEHRDDVYVQRAQAEGYRSRACYKLLELNDKDKFIKPGMTVVDLGSAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA +LV KG V++ D LP+ + G V + DFT+ + D + ++ D
Sbjct: 64 SQVAAQLVGH--------KGRVIASDILPMDAVAG-VDFIQGDFTEQSVFDEIQAVIGDS 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VVLSDMAPN +G+ +D L + AV G K++ G + +
Sbjct: 115 VPSVVLSDMAPNMSGIVSVDQPKAMYLVELALDMAVQMLPEGGVFAAKVFHGEGFDEWLK 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
S+ + V KP +SR S E++++ +GF+
Sbjct: 175 SVRSHFKTVNSRKPAASRPRSKEVYVVAKGFR 206
>gi|255020638|ref|ZP_05292700.1| cell division protein FtsJ [Acidithiobacillus caldus ATCC 51756]
gi|254969874|gb|EET27374.1| cell division protein FtsJ [Acidithiobacillus caldus ATCC 51756]
Length = 207
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 18/216 (8%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F DP+VQ+A +E YR R+++KLLEI K LR G +VLD GAAPG W
Sbjct: 3 RSKSSKQWLREHFQDPFVQRAAREGYRSRASYKLLEIQEKDGLLRRGQRVLDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT----I 131
+QVA +V S G +++VD+L + P+ GA+V+ Q DI D V
Sbjct: 63 TQVAAAIVGSEGR--------IVAVDRLAMDPVPGALVI------QGDIYDEAVIAQCRA 108
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
+ +D++LSDMAPN +G+ D L + A + PG L+K++ G
Sbjct: 109 AFPEGVDLILSDMAPNLSGIASADQARAVALCELALDLAREWLVPGGKLLMKVFMGAGAQ 168
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+L + + ++ + KP +SR+ SAE + L ++
Sbjct: 169 ELRRELQGSFRRIVVRKPEASRARSAEQYWLALDYR 204
>gi|357405164|ref|YP_004917088.1| 23S rRNA methyltransferase [Methylomicrobium alcaliphilum 20Z]
gi|351717829|emb|CCE23494.1| Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA
methyltransferase) [Methylomicrobium alcaliphilum 20Z]
Length = 205
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 119/212 (56%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F D YV+ A+ + +R R+ FKL+EI K K ++PG+ ++D GAAPG W
Sbjct: 3 RSKSSSRWLQEHFHDEYVKMAQAQGWRSRAVFKLIEIQEKDKIIKPGMNIVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ A +++ K ++++D LP+ P++ V + DF + + ++L +L
Sbjct: 63 SQYARRIIGQ--------KNKIVALDILPMDPLEN-VDFIQGDFRELAVLEQLQAVLAGA 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN TG + +D L + A + G L+K++ G +
Sbjct: 114 TVDLVMSDMAPNMTGNKGVDQPNSMYLCELALDTARSILNRGGSFLVKVFQGEGYESFLK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +S V I KP +SRS S E+++LG+GFK
Sbjct: 174 DTRQSFSSVAIRKPKASRSRSNEVYILGKGFK 205
>gi|389877295|ref|YP_006370860.1| 23S rRNA methylase [Tistrella mobilis KA081020-065]
gi|388528079|gb|AFK53276.1| 23S rRNA methylase [Tistrella mobilis KA081020-065]
Length = 271
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 119/212 (56%), Gaps = 6/212 (2%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+RQ DPYV AK+E YR R+AFK+L++D K L+PG +V+D GAAPG W
Sbjct: 48 RSASSTRWLERQLNDPYVVAAKREGYRSRAAFKILQLDEKYGLLKPGQRVVDLGAAPGGW 107
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+Q+AV + + V+ +D LP+ PI+ A ++ + DF D L L
Sbjct: 108 TQIAVDRTKAGRAGGGR----VVGIDLLPVEPIEHATLI-QLDFLDDAAPDLLKQAL-GG 161
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+VLSDMAP +G ++DH I L + FA + K++ G +L +
Sbjct: 162 PADLVLSDMAPQTSGHPQVDHLRIMHLLEIALDFAAEVLAEDGAFVAKVFRGGAEGELVK 221
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ R + VK +KP +SR S+E++++ +GF+
Sbjct: 222 RMQRLFRTVKHMKPAASRPESSEMYVIAQGFR 253
>gi|118594568|ref|ZP_01551915.1| cell division protein FtsJ [Methylophilales bacterium HTCC2181]
gi|118440346|gb|EAV46973.1| cell division protein FtsJ [Methylophilales bacterium HTCC2181]
Length = 205
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 110/209 (52%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S W+ +DPYV KAK YR R+AFKLLE + K FL + V+D G+APGSW
Sbjct: 3 RSKTSKSWMNEHVSDPYVHKAKIAGYRSRAAFKLLEANEKFNFLTKKMNVVDLGSAPGSW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV ++ +G + ++D L + PI L K DF + ++ D L L
Sbjct: 63 SQVISQMTGCNGN--------IFALDLLEMVPIKNVEFL-KGDFREQEMLDSLEKKLGKT 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+SDMAPN +G++ D I L ++F+ + KP L+K + G
Sbjct: 114 SLDLVISDMAPNISGIKTSDQAGIIHLNELALQFSTDWLKPNGCFLVKSFVGAEFDGFVA 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
+ + +V KP SSR S+E+F+ GR
Sbjct: 174 ETRKHFEKVTTFKPASSRDRSSEIFVFGR 202
>gi|416939936|ref|ZP_11934416.1| ribosomal RNA large subunit methyltransferase E [Burkholderia sp.
TJI49]
gi|325524578|gb|EGD02605.1| ribosomal RNA large subunit methyltransferase E [Burkholderia sp.
TJI49]
Length = 220
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 120/217 (55%), Gaps = 5/217 (2%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ + WL DPYV+ A++E YR R+A+KL EID + K +RPG ++ GAAPGS
Sbjct: 2 AKNRFNQHWLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVALGAAPGS 61
Query: 75 WSQVA-VKLVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
WSQ A KL D+ + G+ ++++D LP+ PI V + DF + ++ +L
Sbjct: 62 WSQYARNKLAQGKKRDAVREGGIDGTIVALDMLPMEPI-ADVHFIQGDFREDEVLHQLED 120
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+L+ +D+V+SDMAPN +G+ D I + + FA + KP L+K + G
Sbjct: 121 VLEGRPVDLVISDMAPNLSGVASADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGY 180
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
Q+ E + + V KP +SR S+E F+LGR K
Sbjct: 181 SQIVEKFKQQFKVVAPRKPKASRDKSSETFILGRHLK 217
>gi|82701616|ref|YP_411182.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosospira multiformis
ATCC 25196]
gi|123545045|sp|Q2YBT1.1|RLME_NITMU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|82409681|gb|ABB73790.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrosospira multiformis
ATCC 25196]
Length = 206
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 115/210 (54%), Gaps = 9/210 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S W+K D +V++AKKE YR R+A+KL+EI + +PG+ V+D GAAPG W
Sbjct: 3 RTKTSKAWMKEHVNDFFVRQAKKEGYRSRAAYKLMEIAERDHLFKPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA + + KG +++D L + PI G V + DF + + L LKD
Sbjct: 63 SQVAAEKLKG--------KGRAVALDILEMAPISG-VTFIQGDFREASVLAELKEQLKDL 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+ DM+PN TG+R +D LA + F G + L+K++ G +
Sbjct: 114 PVDLVICDMSPNITGIRVIDQTRGMHLAELALEFCTEQLNSGGNFLVKVFQGSGFDEFFR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRG 225
++ + +V KP +SR S+E++LLG G
Sbjct: 174 AMRATFHRVVTRKPLASRGRSSEIYLLGLG 203
>gi|325187807|emb|CCA22351.1| ribosomal RNA large subunit methyltransferase J puta [Albugo
laibachii Nc14]
Length = 233
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%)
Query: 9 LKEVPKGKDHSSHL-WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLD 67
LK K K H++ W+ RQ+ DPYV++A++EN R R+AFKL +++ K +R G VLD
Sbjct: 14 LKRCEKEKKHTAKASWIHRQWNDPYVKQARRENLRSRAAFKLRDLNKKFDIIRHGDTVLD 73
Query: 68 CGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDR 127
GAAPG W+Q+A + + YD + + V++VD +P+ ++GA ++ DF ++
Sbjct: 74 LGAAPGGWTQIAA-MESCGEYDRDRRR--VIAVDLVPMQIVEGASIVMG-DFRDSSTRNE 129
Query: 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187
+ +L+ +DVVLSDMAP TG D +L + A Y K G + + K+
Sbjct: 130 IGQLLEGRMVDVVLSDMAPRFTGHFLKDSQQQLRLCYNALLMAELYLKVGGNFVTKVLQS 189
Query: 188 RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + VK KP SSRS S ELF +G+ ++G
Sbjct: 190 EDLEDFRGQMKTQFKSVKGYKPSSSRSESTELFFIGKEYRG 230
>gi|451936271|ref|YP_007460125.1| ribosomal RNA large subunit methyltransferase E [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777194|gb|AGF48169.1| ribosomal RNA large subunit methyltransferase E [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 211
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 125/212 (58%), Gaps = 9/212 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEI-DSKIKFLRPGLKVLDCGAAPGSWSQ 77
SS W+ + DPYV+ A+++ YR R+AFKL+E+ +++ G +V+D G+APGSWSQ
Sbjct: 6 SSRKWINQHINDPYVKLAQQKGYRSRAAFKLIELLETENLSFHNGARVIDLGSAPGSWSQ 65
Query: 78 VA-VKLVNSHG-YDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
V KL S+G DS+ ++++D LP+ P+ G V + DF DI D+L IL +
Sbjct: 66 VMHEKLSKSNGALDSR-----IIALDLLPMDPLPG-VEFIQGDFLDQDIIDKLEKILSNQ 119
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R++D I + + FAV + K +IK + G Q+
Sbjct: 120 LVDIVISDMAPNLSGIRDVDSMRICNICELALNFAVNHLKKNGVIIIKSFHGSGFSQIVY 179
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+F+ +V KP SSR S+E FL+ R K
Sbjct: 180 LYKKFFKRVLEFKPKSSRFKSSETFLIARNLK 211
>gi|418294693|ref|ZP_12906577.1| cell division protein FtsJ [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379066060|gb|EHY78803.1| cell division protein FtsJ [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 207
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 125/217 (57%), Gaps = 15/217 (6%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL DP+V++A+K+ R RS++KL+E++ K K +RPG+ V+D G+APG W
Sbjct: 3 RSKSSRRWLDEHVNDPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA KLV KG VL+ D LP+ +D V + DFT + ++ L +
Sbjct: 63 SQVAGKLVGE--------KGRVLATDILPMGGLDN-VDFVQGDFTDDAVFQEILDRLDGN 113
Query: 136 KLDVVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
+ D+++SD+APN +G+ D + +L + ++R + KPG + ++K++ G
Sbjct: 114 QPDLIVSDIAPNLSGVAVADQASSMYLVELTLDMVRKVL---KPGGNYVVKVFQGEGSDD 170
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V + KP +SR S E++L+ +GFKG+
Sbjct: 171 FLRDVRTSFEKVVVRKPAASRPRSNEVYLVAKGFKGQ 207
>gi|260775431|ref|ZP_05884328.1| cell division protein FtsJ [Vibrio coralliilyticus ATCC BAA-450]
gi|260608612|gb|EEX34777.1| cell division protein FtsJ [Vibrio coralliilyticus ATCC BAA-450]
Length = 209
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D + +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKFANEARKKGYRSRAYFKMEEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G +++ D LP+ PI G L + DF + + + L+ ++ ++
Sbjct: 69 AAKIVGDEGK--------IIACDLLPMDPIAGVSFL-QGDFREDAVLEALLDRIQPSMVN 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 DVRDMFKVVKIRKPDSSRARSREVFIVATGYKG 209
>gi|383759178|ref|YP_005438163.1| ribosomal RNA large subunit methyltransferase J [Rubrivivax
gelatinosus IL144]
gi|381379847|dbj|BAL96664.1| ribosomal RNA large subunit methyltransferase J [Rubrivivax
gelatinosus IL144]
Length = 226
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 108/203 (53%), Gaps = 1/203 (0%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A++E YR R+A+KL EID +RPG +D GA PG+WSQ +
Sbjct: 13 WLHDHLTDPYVKAAQREGYRSRAAYKLKEIDEAFALIRPGQVAVDLGATPGAWSQYLRRR 72
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
G + G ++++D L PI+G L + DF + ++ RL L +D+V+S
Sbjct: 73 FAPEGAAAGALDGTIIALDILDFEPIEGVTFL-QGDFREDEVAARLAAELAGRPVDIVVS 131
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D + L + FA+ + KP + K + G QL + +
Sbjct: 132 DMAPNLSGIPVSDAARVAHLVELAVEFALQHLKPEGALVCKAFHGSGYSQLVKLFKDSFR 191
Query: 203 QVKILKPPSSRSHSAELFLLGRG 225
VK +KP +SR SAE FL+G G
Sbjct: 192 IVKPIKPKASRDKSAETFLVGIG 214
>gi|403354542|gb|EJY76828.1| Ribosomal RNA large subunit methyltransferase E [Oxytricha
trifallax]
Length = 521
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 116/206 (56%), Gaps = 8/206 (3%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
W++R DP+V++AK + YR R+A+KL+EID+K + G+KV+D G APG WSQ+ +
Sbjct: 25 WMERHLNDPFVKQAKLQAYRSRAAYKLMEIDNKFSIFKKGMKVIDVGCAPGGWSQIIAEK 84
Query: 83 VNSHGYDSKQP-KGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVL 141
V+S QP + VD + I P+ G V + D + DIQD++ L K D++L
Sbjct: 85 VDS------QPGSETAVGVDLIEIIPVKG-VKFIQGDIQKQDIQDKISEALDFQKADLIL 137
Query: 142 SDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY 201
SD P+ G R +DH L +++F +PG L+KI G L + +
Sbjct: 138 SDAVPDFVGERYIDHMKSVNLNHLILKFCEKNLRPGGLLLMKIMQGPAEQDLFDYTKLLF 197
Query: 202 SQVKILKPPSSRSHSAELFLLGRGFK 227
++ +KP +SR S E++LLG+G++
Sbjct: 198 DNLQRVKPSASRQESKEIYLLGKGWE 223
>gi|163802296|ref|ZP_02196190.1| cell division protein FtsJ [Vibrio sp. AND4]
gi|159173825|gb|EDP58639.1| cell division protein FtsJ [Vibrio sp. AND4]
Length = 209
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 117/213 (54%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+ G+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQTKDKLLKSGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K++ G +++ D LP+ PI G L + DF + D L+ ++ +D
Sbjct: 69 AAKIIGEDGQ--------IIACDLLPMDPIAGVSFL-QGDFRDEAVLDALLERIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQFVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDTFRVVKIRKPDSSRARSREVFVVASGYKG 209
>gi|319793960|ref|YP_004155600.1| ribosomal RNA methyltransferase rrmj/ftsj [Variovorax paradoxus
EPS]
gi|315596423|gb|ADU37489.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Variovorax paradoxus
EPS]
Length = 222
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 116/208 (55%), Gaps = 7/208 (3%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A +E YR R+A+KL EID + ++PG V+D G+ PG+WSQ +
Sbjct: 14 WLHDHINDPYVKLATREGYRARAAYKLKEIDESLGLVKPGQLVVDLGSTPGAWSQYLRRR 73
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
++ G G ++++D L + PI+G V + DF + ++ ++++ +L K D+V+S
Sbjct: 74 MSPEGAAIGTLNGTIIALDMLAMEPIEG-VTFIQGDFREVELLEQVLGVLAGRKADLVVS 132
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-- 200
DMAPN +G+ D I L + FA + KP + K++ G +ES+ F
Sbjct: 133 DMAPNISGIHSADGARIAHLIELAVDFAQHHLKPEGALVAKLFHGGG---YDESVKLFKA 189
Query: 201 -YSQVKILKPPSSRSHSAELFLLGRGFK 227
+ VK KP +SR SAE FL+G G K
Sbjct: 190 SFRTVKPFKPKASRDKSAETFLVGMGLK 217
>gi|254522154|ref|ZP_05134209.1| ribosomal RNA large subunit methyltransferase J [Stenotrophomonas
sp. SKA14]
gi|219719745|gb|EED38270.1| ribosomal RNA large subunit methyltransferase J [Stenotrophomonas
sp. SKA14]
Length = 210
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 9/207 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F+DP+V+KA+ E R R+A+KL E+ + + L+P + V+D GAAPG WSQ
Sbjct: 7 SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGGWSQQ 66
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
+ + G VL++D L + P+ G L DF + + + +L D +D
Sbjct: 67 VRRQIGD--------TGRVLALDILDMPPLAGVEFLH-GDFREETVLSQFEAMLGDQPVD 117
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPN +G+ +D + LA + FA + K G LIK++ G +
Sbjct: 118 LVLSDMAPNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVREMR 177
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRG 225
R Y +V I KP +SR S E++ LG+G
Sbjct: 178 RRYDKVSIRKPEASRKRSPEVYALGQG 204
>gi|304314116|ref|YP_003849263.1| 23 S ribosomal RNA methyltransferase [Methanothermobacter
marburgensis str. Marburg]
gi|302587575|gb|ADL57950.1| predicted 23 S ribosomal RNA methyltransferase [Methanothermobacter
marburgensis str. Marburg]
Length = 211
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 128/212 (60%), Gaps = 18/212 (8%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
W + D Y + AK+ENYR R+++KLL+++++ + +R G +VLD GAAPG WSQVA++
Sbjct: 5 WQAERKRDHYYKSAKRENYRSRASYKLLQLNNRYRLIRKGYRVLDLGAAPGGWSQVALEK 64
Query: 83 VNSHGYDSKQPKGLVLSVD--KLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVV 140
V +GLV++VD ++ +P++ + DFT P I++R++ L + DVV
Sbjct: 65 VGE--------EGLVVAVDLQRIKGFPVENFRAIM-GDFTDPAIKERIIEEL-GGRADVV 114
Query: 141 LSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200
+SD AP+ +G+R++DH L V+ A + + LIK + G P+L++ I
Sbjct: 115 ISDAAPSLSGIRDIDHLRSVDLVENVLDIAYRVLERKGNILIKAFQG---PELDKVIKEM 171
Query: 201 ---YSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ ++K KP SSR SAE++++GR FKGK
Sbjct: 172 KKDFWKLKTTKPASSRKASAEMYIVGRDFKGK 203
>gi|68074943|ref|XP_679388.1| ribosomal RNA methyltransferase [Plasmodium berghei strain ANKA]
gi|56500124|emb|CAH98004.1| ribosomal RNA methyltransferase, putative [Plasmodium berghei]
Length = 253
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 119/216 (55%), Gaps = 9/216 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K HSS W++RQ D YV KAK ENYR R+AFKL+E+D+K FL+ +LD G+ PG
Sbjct: 27 KKSSHSSK-WIQRQITDRYVLKAKNENYRSRAAFKLIELDNKYLFLKKNKTILDIGSYPG 85
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW QV ++ +K ++++DK + P+ V K + + ++ D+L +LK
Sbjct: 86 SWCQVILE-------RTKNYTNEIIAIDKKIMDPLPN-VHFIKAEIGKDNVDDQLKEVLK 137
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K+D++LSD A G + DH +L +++ F Y G ++K++ G L
Sbjct: 138 DKKIDIILSDAAVACIGNKIDDHLNSCELTLSITNFMEQYINIGGVYIVKMYLGSQTNNL 197
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V KP +SRS S E++L+ R F G+
Sbjct: 198 KTYLKTIFQYVNTAKPKASRSESREIYLVCRNFTGR 233
>gi|399907841|ref|ZP_10776393.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas sp. KM-1]
Length = 246
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 9/206 (4%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WLK F D +VQ++ ++ YR R+++KLL +D K + +PG+ V+D GAAPG WSQVA
Sbjct: 50 WLKEHFDDRFVQQSWQDGYRSRASYKLLALDEKDRLFKPGMSVIDLGAAPGGWSQVAADR 109
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
V P+G+V++ D L + + G V + DFT+ + + ++ L +D+V+S
Sbjct: 110 VG--------PEGMVIASDILEMDALAG-VEFIQGDFTEEAVLEAILATLDGRPVDLVMS 160
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +GM +D L + A +PG L K++ G + + ++
Sbjct: 161 DMAPNMSGMSAIDQPQAMYLVELALDLARQTLRPGGRFLAKVFQGEGFDAYLKELRESFT 220
Query: 203 QVKILKPPSSRSHSAELFLLGRGFKG 228
+V KP +SR+ S E++LL GF+G
Sbjct: 221 KVVTRKPEASRARSREVYLLADGFRG 246
>gi|343519390|ref|ZP_08756373.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
pittmaniae HK 85]
gi|343392756|gb|EGV05318.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
pittmaniae HK 85]
Length = 228
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 127/232 (54%), Gaps = 18/232 (7%)
Query: 3 STTGPKLKEVPKGKDH---SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFL 59
+TT + K+ GK+ SS WL F DP+VQKA K+ R R+ FKL EI +
Sbjct: 8 TTTKNRTKDKDYGKEKRSASSSRWLNEHFKDPFVQKAHKQKLRSRAYFKLDEIQQTDRLF 67
Query: 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDF 119
+PG+ V+D GAAPG WSQ AV + S KG V++ D L + PI G L + DF
Sbjct: 68 KPGMTVVDLGAAPGGWSQYAVSQIGS--------KGRVIACDILEMSPIVGVDFL-QGDF 118
Query: 120 TQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKP 176
+ ++ + L+ + + K+DVV+SDMAPN +GM +D + +LA+ + R +
Sbjct: 119 REENVLNALLERVGEAKVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLALK-- 176
Query: 177 GADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++K++ G + I ++ VK+ KP +SR S E++++ GFKG
Sbjct: 177 -GSFVVKVFQGEGFDDYLKEIRSLFNAVKVRKPEASRGRSREVYIVASGFKG 227
>gi|88797615|ref|ZP_01113204.1| cell division protein FtsJ [Reinekea blandensis MED297]
gi|88779787|gb|EAR10973.1| cell division protein FtsJ [Reinekea sp. MED297]
Length = 206
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 119/210 (56%), Gaps = 9/210 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
+S WLK F DP+V KAK++ YR R+++KLLE+ K + +RPG+ V+D G+APG WSQV
Sbjct: 6 NSKDWLKEHFDDPFVHKAKQDGYRSRASYKLLELCEKDRLIRPGMMVVDLGSAPGGWSQV 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + +L +D +P V + DFT + L+ + D +D
Sbjct: 66 AARMVGDQG---RVVASDILEMDAVP------DVEFIQGDFTDEAVYQALLDCIGDRPVD 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G +D L + A + +PG + K++ G + +++
Sbjct: 117 LVISDMAPNMSGNAVIDQPAAMYLVELALDMAQSILRPGGAFVAKLFHGAGFDEYVKTVR 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ Y++V + KP +SR+ S E +++ GFKG
Sbjct: 177 QQYTKVVMRKPEASRARSRETYIVATGFKG 206
>gi|433658544|ref|YP_007275923.1| Cell division protein FtsJ [Vibrio parahaemolyticus BB22OP]
gi|432509232|gb|AGB10749.1| Cell division protein FtsJ [Vibrio parahaemolyticus BB22OP]
Length = 209
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G +++ D LP+ PI G L + DF + L+ ++ +D
Sbjct: 69 AAKIVGDSGQ--------IIACDLLPMDPIAGVSFL-QGDFRDDAVLGALLDRIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDMFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|329889243|ref|ZP_08267586.1| ftsJ-like methyltransferase family protein [Brevundimonas diminuta
ATCC 11568]
gi|328844544|gb|EGF94108.1| ftsJ-like methyltransferase family protein [Brevundimonas diminuta
ATCC 11568]
Length = 240
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 13/217 (5%)
Query: 6 GPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
G K+K K K SS W+KRQ +D + +A+ E +R R+AFKL+EID K + ++ G +V
Sbjct: 32 GQKIKTADK-KTLSSQAWIKRQLSDEWSDRARAEGWRSRAAFKLMEIDDKFRLIKRGSRV 90
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
+D GAAPG W QVA+ + V VD L I PI GA ++ + DFT P +
Sbjct: 91 IDLGAAPGGWVQVAL----------DRGAAAVAGVDLLMIEPIPGATLI-QADFTDPGVD 139
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+++ + D+VLSDMA N G R+ DH I L FA+ +PG + + K +
Sbjct: 140 QQMLDAIGGPP-DLVLSDMAHNTVGHRQTDHLKIIALIEIAADFAIRTLRPGGNFVSKNF 198
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLL 222
G + + + + VK +KP SSR SAE+FL+
Sbjct: 199 QGGDAGGVLTRLREEFETVKYVKPESSRKGSAEVFLV 235
>gi|400288879|ref|ZP_10790911.1| 23S rRNA methyltransferase J [Psychrobacter sp. PAMC 21119]
Length = 210
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 115/205 (56%), Gaps = 9/205 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W+K D YVQKA+K+ YR R+A+KLLEI+ K ++ G+ V+D G+APGSWSQV
Sbjct: 13 SSSAWMKEHIDDHYVQKAQKDGYRARAAYKLLEINEKTNLIKKGMTVVDLGSAPGSWSQV 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +LV G +L++D LP V + DF + ++ D ++ + D ++D
Sbjct: 73 AGQLVGEQGILIASD---ILAMDTLP------DVTFIQGDFREAEVFDAIMAEVGDRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMAPN G +D + L + FA+ ++K++ G +L + +
Sbjct: 124 VVLSDMAPNTAGNSAIDQPRMMYLCELAVDFALATLPEDGALIMKVFQGEGTQELRKQMQ 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
+S+++ +KP +SR S E+F +
Sbjct: 184 LDFSKIRSIKPGASRPRSKEMFWIA 208
>gi|441503637|ref|ZP_20985639.1| Ribosomal RNA large subunit methyltransferase E [Photobacterium sp.
AK15]
gi|441428713|gb|ELR66173.1| Ribosomal RNA large subunit methyltransferase E [Photobacterium sp.
AK15]
Length = 209
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 117/212 (55%), Gaps = 15/212 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YVQ+A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYVQEAQKKGYRSRAIFKIEEIQNKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G V++ D LP+ + G L + DF + + D L+ ++ D +D
Sbjct: 69 AAEIVGDEGQ--------VIACDILPMDSLPGVSFL-QGDFREEAVLDALLERIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VVLSDMAPN +G D + +LA+ + R + P +K++ G Q
Sbjct: 120 VVLSDMAPNMSGNLASDQPRAMYLVELALDMCRQVLA---PNGSFAVKVFQGEGFDQYLA 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + VKI KP SSR S E++++ G+K
Sbjct: 177 EVRSMFKVVKIRKPDSSRDRSREVYIVATGYK 208
>gi|353327965|ref|ZP_08970292.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia endosymbiont wVitB of Nasonia vitripennis]
Length = 192
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 107/199 (53%), Gaps = 14/199 (7%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D YVQK K+ YR RSA+KL+EID K K L+ G K++D GA PG WSQVA K S
Sbjct: 3 DQYVQKTNKDGYRSRSAYKLIEIDDKFKLLQQGQKIIDLGAFPGGWSQVASKKGAS---- 58
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT 149
V++VD PI I G + +CD + L KD K DV+LSDMAP +
Sbjct: 59 -------VIAVDIKPINAISGVECI-RCDIISE--LEILREKFKDHKFDVILSDMAPESC 108
Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
G++ +DH I L A + FA + ++KI+ G + + + + V+ KP
Sbjct: 109 GLKSLDHIRIMLLCEAALNFAKHFLNHDGKFVVKIFQGESDKDFCNELKKMFKTVRYFKP 168
Query: 210 PSSRSHSAELFLLGRGFKG 228
SSRS S E++L+ GF G
Sbjct: 169 KSSRSESTEMYLVSLGFIG 187
>gi|197334812|ref|YP_002155234.1| 23S rRNA methyltransferase J [Vibrio fischeri MJ11]
gi|423685191|ref|ZP_17659999.1| 23S rRNA methyltransferase J [Vibrio fischeri SR5]
gi|226705320|sp|B5FA72.1|RLME_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|197316302|gb|ACH65749.1| ribosomal RNA large subunit methyltransferase J [Vibrio fischeri
MJ11]
gi|371495692|gb|EHN71287.1| 23S rRNA methyltransferase J [Vibrio fischeri SR5]
Length = 209
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +A+K YR R+ FK+ EI +K K L+ G+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYVLEAQKRGYRSRAIFKIEEIQNKDKLLKSGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ V G V++ D LP+ I G L + DF + + D L+ ++ D +D
Sbjct: 69 AVEQVGDEGQ--------VIACDILPMDSIAGVSFL-QGDFREEAVLDALLERIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN +G +D + +LA+ + R + P +K++ G Q +
Sbjct: 120 VVMSDMAPNMSGNLAVDQPRAMYLVELALDMCRQVLA---PNGSFTVKVFQGEGFDQYLQ 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E++++ G+KG
Sbjct: 177 EVRNMFKVVKIRKPDSSRARSREVYIVATGYKG 209
>gi|149375763|ref|ZP_01893531.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter algicola
DG893]
gi|149359888|gb|EDM48344.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter algicola
DG893]
Length = 206
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F D +V+K++++ YR R+++KL+E+D+K + RPG V+D GAAPG W
Sbjct: 3 RSKTSDRWLKEHFDDVWVKKSREDGYRSRASYKLIELDNKDRLFRPGQTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA++ V + G+V++ D L + PI G V + DFT+ + D L+ +L D
Sbjct: 63 SQVAIERVGDN--------GVVVASDILEMSPIAG-VAFVQGDFTEQSVLDELLDLLGDR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+ DVV+SDMAPN +GM +D L + A KPG + K++ G L
Sbjct: 114 RADVVISDMAPNMSGMAAVDIPNAMGLVELALDMAQQVLKPGGVFVAKVFQGEGFDALLA 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + V KP SSR+ S E++ + +GFKG
Sbjct: 174 EMRKSFGTVVSRKPDSSRARSREIYQVCKGFKG 206
>gi|77166028|ref|YP_344553.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosococcus oceani
ATCC 19707]
gi|254436320|ref|ZP_05049826.1| ribosomal RNA large subunit methyltransferase J [Nitrosococcus
oceani AFC27]
gi|123593534|sp|Q3J823.1|RLME_NITOC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|76884342|gb|ABA59023.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrosococcus oceani ATCC
19707]
gi|207088010|gb|EDZ65283.1| ribosomal RNA large subunit methyltransferase J [Nitrosococcus
oceani AFC27]
Length = 212
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 10/213 (4%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
+ K K HS+ WL+ F D YV +AK + YR R+ FKL EID++ + L PG V+D GAA
Sbjct: 1 MAKRKSHSAR-WLREHFRDSYVIQAKAQGYRSRAVFKLQEIDTRERLLGPGRVVIDLGAA 59
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
PG WSQ A + V +G V+++D LP+ G V + DF + ++ L
Sbjct: 60 PGGWSQWAAERVGE--------RGRVIAMDILPMLSCPG-VQFIQGDFREDNVLAELQNT 110
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L +D+V+SDMAPN +GM +D L + FA P L+K + G
Sbjct: 111 LAGCVVDLVMSDMAPNMSGMAAVDQPRAIYLGELALAFAQESLGPEGSFLLKTFQGEGFD 170
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGR 224
L E I + +S+V+I KPP+SR S E++++ R
Sbjct: 171 ALYEVIRQDFSRVRIHKPPASRGRSREVYIVAR 203
>gi|28899238|ref|NP_798843.1| 23S rRNA methyltransferase J [Vibrio parahaemolyticus RIMD 2210633]
gi|260879068|ref|ZP_05891423.1| ribosomal RNA large subunit methyltransferase J [Vibrio
parahaemolyticus AN-5034]
gi|260896885|ref|ZP_05905381.1| ribosomal RNA large subunit methyltransferase J [Vibrio
parahaemolyticus Peru-466]
gi|81727000|sp|Q87LZ4.1|RLME_VIBPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|28807462|dbj|BAC60727.1| cell division protein FtsJ [Vibrio parahaemolyticus RIMD 2210633]
gi|308086279|gb|EFO35974.1| ribosomal RNA large subunit methyltransferase J [Vibrio
parahaemolyticus Peru-466]
gi|308089606|gb|EFO39301.1| ribosomal RNA large subunit methyltransferase J [Vibrio
parahaemolyticus AN-5034]
Length = 209
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G +++ D LP+ PI G L + DF + + L+ ++ +D
Sbjct: 69 AAKIVGDSGQ--------IIACDLLPMDPIAGVSFL-QGDFRDDAVLEALLDRIQPLMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDMFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|194365244|ref|YP_002027854.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Stenotrophomonas
maltophilia R551-3]
gi|226705317|sp|B4SRA0.1|RLME_STRM5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|194348048|gb|ACF51171.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Stenotrophomonas
maltophilia R551-3]
Length = 210
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 9/207 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F+DP+V+KA+ E R R+A+KL E+ + + L+P + V+D GAAPG WSQ
Sbjct: 7 SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGGWSQQ 66
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
+ + G VL++D L + P+ G L DF + + + +L D +D
Sbjct: 67 VRRQIGD--------TGRVLALDILDMPPLAGVEFLH-GDFREETVLSQFEAMLGDQPVD 117
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPN +G+ +D + LA + FA + K G LIK++ G +
Sbjct: 118 LVLSDMAPNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVRDMR 177
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRG 225
R Y +V I KP +SR S E++ LG+G
Sbjct: 178 RRYDKVSIRKPEASRKRSPEVYALGQG 204
>gi|91792359|ref|YP_562010.1| 23S rRNA methyltransferase J [Shewanella denitrificans OS217]
gi|123357037|sp|Q12QI9.1|RLME_SHEDO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91714361|gb|ABE54287.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella denitrificans
OS217]
Length = 209
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS W++ F D YV+ A+K R R+AFKL EI K +R G+ V+D GAAPG
Sbjct: 4 KKRTASSARWMQEHFDDHYVKLAQKRGLRSRAAFKLEEIQQKDHLIRQGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVKL +G V++ D LP+ PI G L + DF + ++ + L+ +
Sbjct: 64 GWSQVAVKLAGDNGK--------VIACDILPMDPIVGVDFL-QGDFREENVLNALLDRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+DK+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 EDKVDVVLSDMAPNMSGSDGVDQPRAMYLVELALEMCHQVLAPNGCFAVKVFQGEGFDEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+S+ + + VK KP SSR+ S E++L+ G+K
Sbjct: 175 IKSVKQAFKTVKTRKPDSSRARSREVYLVATGYK 208
>gi|373450762|ref|ZP_09542726.1| Ribosomal RNA large subunit methyltransferase J [Wolbachia
pipientis wAlbB]
gi|371932007|emb|CCE77739.1| Ribosomal RNA large subunit methyltransferase J [Wolbachia
pipientis wAlbB]
Length = 192
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 107/199 (53%), Gaps = 14/199 (7%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D YVQK K+ YR RSA+KL+EID K K L+ G K++D GA PG WSQVA K S
Sbjct: 3 DQYVQKTNKDGYRSRSAYKLIEIDDKFKLLQQGQKIIDLGAFPGGWSQVASKKGAS---- 58
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT 149
V++VD PI I G + +CD + L KD K DV+LSDMAP +
Sbjct: 59 -------VIAVDIKPINAISGVECI-QCDIISE--LEILREKFKDHKFDVILSDMAPESC 108
Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
G++ +DH I L A + FA + ++KI+ G + + + + V+ KP
Sbjct: 109 GLKSLDHIRIMLLCEAALNFAKHFLNHDGKFVVKIFQGESDKDFCNELKKMFKTVRYFKP 168
Query: 210 PSSRSHSAELFLLGRGFKG 228
SSRS S E++L+ GF G
Sbjct: 169 KSSRSESTEMYLVSLGFFG 187
>gi|238021385|ref|ZP_04601811.1| hypothetical protein GCWU000324_01284 [Kingella oralis ATCC 51147]
gi|237868365|gb|EEP69371.1| hypothetical protein GCWU000324_01284 [Kingella oralis ATCC 51147]
Length = 206
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 116/209 (55%), Gaps = 9/209 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL DPYV++A+K+ YR R+A+KLLEI+ K K ++ G + D G+APGSW
Sbjct: 4 RSKSSPAWLHEHVNDPYVKRAQKDGYRARAAYKLLEINEKDKLIKQGTVLADLGSAPGSW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+A KLV G V ++D LP+ +DG V + DF + + +L +
Sbjct: 64 SQIAAKLVGK--------TGKVFALDILPMDALDG-VDFIQGDFREEAVLAEFERLLDNR 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD+V+ DMAPN +G +D L + FA + K G L+K++ G +
Sbjct: 115 ALDLVICDMAPNMSGNDTIDQARSFYLCELALDFARGHLKTGGAFLVKVFQGSGYQEYMA 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ + V+ KP +SR+ S+E++LLG+
Sbjct: 175 AMREVFGTVQTRKPDASRNRSSEIYLLGK 203
>gi|119774090|ref|YP_926830.1| 23S rRNA methyltransferase J [Shewanella amazonensis SB2B]
gi|143461617|sp|A1S454.1|RLME_SHEAM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|119766590|gb|ABL99160.1| ribosomal RNA large subunit methyltransferase J [Shewanella
amazonensis SB2B]
Length = 209
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS W++ F D YV+ A+K R R+AFKL E+ K ++PG+ V+D GAAPG
Sbjct: 4 KKRSASSTRWMQEHFDDHYVKLAQKRGLRSRAAFKLEELQEKDHLIKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVAVKLV +G V++ D LP+ PI G L + DF + + + L+ +
Sbjct: 64 GWSQVAVKLVGD--------RGKVIACDILPMDPIVGVDFL-QGDFREDAVLNALLERVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+K+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 DEKVDVVLSDMAPNMSGSDGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ + VK KP SSR+ S E++L+ G+K
Sbjct: 175 MKAVREAFKVVKTRKPDSSRARSREVYLVATGYK 208
>gi|83316088|ref|XP_731073.1| cell division protein FtsJ [Plasmodium yoelii yoelii 17XNL]
gi|23490998|gb|EAA22638.1| FtsJ cell division protein, putative [Plasmodium yoelii yoelii]
Length = 258
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 119/216 (55%), Gaps = 9/216 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K HSS W++RQ D YV KAK ENYR R+AFKL+E+D+K FL+ +LD G+ PG
Sbjct: 32 KKSSHSSK-WIQRQITDRYVLKAKNENYRSRAAFKLIELDNKYLFLKKNKTILDIGSYPG 90
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW QV ++ +K ++++DK + P+ V K + + ++ D+L +LK
Sbjct: 91 SWCQVILE-------RTKNYTNEIIAIDKKIMDPLPN-VHFIKAEIGKDNVDDQLKEVLK 142
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K+D++LSD A G + DH +L +++ F Y G ++K++ G L
Sbjct: 143 DKKIDIILSDAAVACIGNKIDDHLNSCELTLSITNFMEQYINIGGVYIVKMYLGSQTDNL 202
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V KP +SRS S E++L+ R F G+
Sbjct: 203 KTYLKTIFQYVNTAKPKASRSESREIYLVCRNFTGR 238
>gi|190571015|ref|YP_001975373.1| ribosomal RNA large subunit methyltransferase J [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|213019536|ref|ZP_03335342.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia endosymbiont of Culex quinquefasciatus JHB]
gi|190357287|emb|CAQ54715.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia endosymbiont of Culex quinquefasciatus Pel]
gi|212994958|gb|EEB55600.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia endosymbiont of Culex quinquefasciatus JHB]
Length = 192
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 107/199 (53%), Gaps = 14/199 (7%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D YVQK K+ YR RSA+KL+EID K K L+ G K++D GA PG WSQVA K S
Sbjct: 3 DQYVQKTNKDGYRSRSAYKLIEIDDKFKLLQQGQKIIDLGAFPGGWSQVASKKGAS---- 58
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT 149
V++VD PI I G + +CD + L KD K DV+LSDMAP +
Sbjct: 59 -------VIAVDIKPINAISGVECI-QCDIISE--LEILREKFKDHKFDVILSDMAPESC 108
Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
G++ +DH I L A + FA + ++KI+ G + + + + V+ KP
Sbjct: 109 GLKSLDHIRIMLLCEAALNFAKHFLNHDGKFVVKIFQGESDKDFCNELKKMFKTVRYFKP 168
Query: 210 PSSRSHSAELFLLGRGFKG 228
SSRS S E++L+ GF G
Sbjct: 169 KSSRSESTEMYLVSLGFIG 187
>gi|190573711|ref|YP_001971556.1| cell division protein [Stenotrophomonas maltophilia K279a]
gi|386718068|ref|YP_006184394.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Stenotrophomonas maltophilia D457]
gi|408824719|ref|ZP_11209609.1| 23S rRNA methyltransferase J [Pseudomonas geniculata N1]
gi|424668130|ref|ZP_18105155.1| ribosomal RNA large subunit methyltransferase E [Stenotrophomonas
maltophilia Ab55555]
gi|226705318|sp|B2FKA1.1|RLME_STRMK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|190011633|emb|CAQ45252.1| putative cell division protein [Stenotrophomonas maltophilia K279a]
gi|384077630|emb|CCH12219.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Stenotrophomonas maltophilia D457]
gi|401068392|gb|EJP76916.1| ribosomal RNA large subunit methyltransferase E [Stenotrophomonas
maltophilia Ab55555]
gi|456734117|gb|EMF58939.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Stenotrophomonas maltophilia EPM1]
Length = 210
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 9/207 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F+DP+V+KA+ E R R+A+KL E+ + + L+P + V+D GAAPG WSQ
Sbjct: 7 SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGGWSQQ 66
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
+ + G VL++D L + P+ G L DF + + + +L D +D
Sbjct: 67 VRRQIGD--------TGRVLALDILDMPPLAGVEFLH-GDFREEAVLSQFEAMLGDQPVD 117
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPN +G+ +D + LA + FA + K G LIK++ G +
Sbjct: 118 LVLSDMAPNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVRDMR 177
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRG 225
R Y +V I KP +SR S E++ LG+G
Sbjct: 178 RRYDKVSIRKPEASRKRSPEVYALGQG 204
>gi|170695458|ref|ZP_02886603.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia graminis
C4D1M]
gi|170139649|gb|EDT07832.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia graminis
C4D1M]
Length = 220
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 118/209 (56%), Gaps = 5/209 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA-VK 81
WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D G+ PGSWSQ A K
Sbjct: 10 WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSTPGSWSQYARNK 69
Query: 82 LVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
L D+++ G+ ++++D LP+ P+ V + DF + + +L ++ + ++D
Sbjct: 70 LAKGSQRDAERQGGIDGTIIALDLLPMEPV-ADVHFIQGDFREEAVLGQLEELVGERQVD 128
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+ D I L + F+ + KP L+K + G Q+ E
Sbjct: 129 LVISDMAPNLSGVALADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFK 188
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
R + V KP +SR S+E F+LG+ K
Sbjct: 189 RQFKVVAARKPKASRDKSSETFILGKHLK 217
>gi|429769254|ref|ZP_19301370.1| ribosomal RNA large subunit methyltransferase J [Brevundimonas
diminuta 470-4]
gi|429187601|gb|EKY28512.1| ribosomal RNA large subunit methyltransferase J [Brevundimonas
diminuta 470-4]
Length = 240
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 13/217 (5%)
Query: 6 GPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
G K+K K K SS W+KRQ +D + +A+ E +R R+AFKL+EID K + ++ G +V
Sbjct: 32 GQKIKTADK-KTLSSQAWIKRQLSDEWSDRARAEGWRSRAAFKLMEIDDKFRLIKRGSRV 90
Query: 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ 125
+D GAAPG W QVA+ + V VD L I PI GA ++ + DFT P +
Sbjct: 91 IDLGAAPGGWVQVAL----------DRGAAAVAGVDLLMIEPIPGATLI-QADFTDPGVD 139
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+++ + D+VLSDMA N G R+ DH I L FA+ +PG + + K +
Sbjct: 140 QQMLDAIGGPP-DLVLSDMAHNTIGHRQTDHLKIIALIEIAADFAIRTLRPGGNFVSKNF 198
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLL 222
G + + + + VK +KP SSR SAE+FL+
Sbjct: 199 QGGDAGGVLTRLREEFETVKYVKPESSRKGSAEVFLV 235
>gi|338998862|ref|ZP_08637523.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas sp. TD01]
gi|338764244|gb|EGP19215.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas sp. TD01]
Length = 227
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 13/224 (5%)
Query: 9 LKEVPKGKDHS----SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLK 64
+++ P + HS S+ W K F D YV++ ++ YR R+++KLLE+D K K RPG+
Sbjct: 13 MQQKPPSRKHSVSKTSNNWKKEHFDDQYVKQRWQDGYRSRASYKLLELDDKDKLFRPGMT 72
Query: 65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDI 124
V+D GAAPG WSQ+A + V P G+V++ D L + + G V + DFT+ +
Sbjct: 73 VIDLGAAPGGWSQIAAEKVG--------PDGVVIASDILEMDALAG-VDFIQGDFTEESV 123
Query: 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184
+ ++ L + ++D+V+SDMAPN +GM +D L + A PG L K+
Sbjct: 124 LNAILERLGNRQVDLVMSDMAPNMSGMAAIDQPQAMYLVELALELARETLPPGGRFLAKV 183
Query: 185 WDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ G + + + +V KP +SR+ S E++ L GF+G
Sbjct: 184 FQGEGFDTYLKELRSSFDRVVTRKPDASRARSREVYFLAEGFRG 227
>gi|28198008|ref|NP_778322.1| cell division protein [Xylella fastidiosa Temecula1]
gi|182680634|ref|YP_001828794.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa M23]
gi|386084146|ref|YP_006000428.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
subsp. fastidiosa GB514]
gi|417557521|ref|ZP_12208557.1| Methyltransferase involved in cell division FtsJ [Xylella
fastidiosa EB92.1]
gi|81439222|sp|Q87F66.1|RLME_XYLFT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705324|sp|B2I696.1|RLME_XYLF2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|28056068|gb|AAO27971.1| cell division protein [Xylella fastidiosa Temecula1]
gi|182630744|gb|ACB91520.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa M23]
gi|307579093|gb|ADN63062.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
subsp. fastidiosa GB514]
gi|338179917|gb|EGO82827.1| Methyltransferase involved in cell division FtsJ [Xylella
fastidiosa EB92.1]
Length = 213
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 115/207 (55%), Gaps = 9/207 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F+DP+V+KA+ E R R+A+KL EI + + LRP + V+D GAAPG WSQ
Sbjct: 6 SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEEILKRDRILRPNMVVIDLGAAPGGWSQQ 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
K + G V+++D + + P+ G L + DF + +L +LK +D
Sbjct: 66 IRKQMGDSGR--------VIALDIVKMAPLVGIEFL-QGDFRDKAVLSQLEIMLKGQPVD 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPN +G+ MD + LA + FA + KPG LIK++ G +
Sbjct: 117 LVLSDMAPNKSGIDVMDQPRMMYLAELAMDFADIHVKPGGSFLIKLFHGVGSDGYIRQLR 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRG 225
Y +V I KP +SR S E+++LG G
Sbjct: 177 HRYKKVAIRKPLASRKRSPEVYILGDG 203
>gi|344206935|ref|YP_004792076.1| ribosomal RNA large subunit methyltransferase E [Stenotrophomonas
maltophilia JV3]
gi|343778297|gb|AEM50850.1| Ribosomal RNA large subunit methyltransferase E [Stenotrophomonas
maltophilia JV3]
Length = 210
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 114/207 (55%), Gaps = 9/207 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F+DP+V+KA+ E R R+A+KL E+ + + L+P + V+D GAAPG WSQ
Sbjct: 7 SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEELLERDRLLKPHMVVVDLGAAPGGWSQQ 66
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
+ + G VL++D L + P+ G L DF + + + +L D +D
Sbjct: 67 VRRQIGD--------TGRVLALDILDMPPLAGVEFLH-GDFREEAVLSQFEAMLGDQPVD 117
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPN +G+ +D + LA + FA + K G LIK++ G +
Sbjct: 118 LVLSDMAPNKSGVGAVDQPRMMHLAELALDFADNHLKTGGAFLIKLFQGEGFDDYVRDMR 177
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRG 225
R Y +V I KP +SR S E++ LG+G
Sbjct: 178 RRYDKVSIRKPEASRRRSPEVYALGQG 204
>gi|260771180|ref|ZP_05880107.1| ribosomal RNA large subunit methyltransferase J [Vibrio furnissii
CIP 102972]
gi|260613777|gb|EEX38969.1| ribosomal RNA large subunit methyltransferase J [Vibrio furnissii
CIP 102972]
Length = 209
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +AKK+ YR R+ FK+ EI +K K L+P + V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYVNEAKKKGYRSRAIFKIEEIQNKDKLLQPSMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +V G V++ D LP+ I G L + DF + + D L+ ++ + +D
Sbjct: 69 AAGIVGESGQ--------VIACDILPMDSIAGVSFL-QGDFREEAVLDALLERIQPNMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E++++ G+KG
Sbjct: 177 DVRDMFKAVKIRKPDSSRARSREVYIVATGYKG 209
>gi|91775135|ref|YP_544891.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacillus
flagellatus KT]
gi|123380563|sp|Q1H387.1|RLME_METFK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91709122|gb|ABE49050.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methylobacillus
flagellatus KT]
Length = 207
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 122/205 (59%), Gaps = 9/205 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
+S WL+ D +V++A+++ YR R+A+KLLEID K + ++PG+ ++D G+APGSWSQV
Sbjct: 6 TSKAWLQEHVNDEFVKRAQRDGYRARAAYKLLEIDDKDQLIKPGMTIVDLGSAPGSWSQV 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ + G V+++D L + PI G V + DF + +I L L +D
Sbjct: 66 AVQRLAGQGR--------VIALDILEMPPIPG-VEFIQGDFREEEILLVLEKSLNGKPVD 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V++DMAPN +G+ ++D L + F+ + KPG + L+K++ G ++ ++
Sbjct: 117 LVIADMAPNISGISDVDQARAAYLVELALEFSREWLKPGGNFLVKVFVGSGFDEIVMAMR 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
+ +V KP +SR S+E++LLG
Sbjct: 177 DSFEKVVTRKPKASRDRSSEVYLLG 201
>gi|261345168|ref|ZP_05972812.1| ribosomal RNA large subunit methyltransferase J [Providencia
rustigianii DSM 4541]
gi|282566860|gb|EFB72395.1| ribosomal RNA large subunit methyltransferase J [Providencia
rustigianii DSM 4541]
Length = 209
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQGDKIFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDR-----L 128
WSQ V + HG V++ D LP+ PI G DF Q D +D L
Sbjct: 64 GWSQYVVSQIGHHGR--------VIACDLLPMDPIVG------VDFLQGDFRDEAVLAAL 109
Query: 129 VTILKDDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ + D K+ VV+SDMAPN +G E+D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDKKVQVVMSDMAPNMSGTPEVDIPRSMYLVELALDMCRAVLA---PGGSFIVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VK+ KP SSR+ S E++++ G K
Sbjct: 167 QGEGFDEYLRDIRSLFTKVKVRKPESSRARSREVYIVATGLK 208
>gi|430376388|ref|ZP_19430791.1| 23S rRNA methyltransferase J [Moraxella macacae 0408225]
gi|429541619|gb|ELA09647.1| 23S rRNA methyltransferase J [Moraxella macacae 0408225]
Length = 229
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 118/202 (58%), Gaps = 9/202 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W+K D YV+ A ++ YR R+A+KLLEI+ K++ ++ G+ V+D G+APGSWSQV
Sbjct: 32 SSRAWIKEHLDDHYVKLAHRDGYRARAAYKLLEINDKLQLIKKGMTVVDLGSAPGSWSQV 91
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G +++ D LP+ ++ V + DF + +I D+++T + K++
Sbjct: 92 AGKIVGESGK--------LIASDILPMDTLEN-VTFIQGDFRKQEIFDKIMTEVAGKKVN 142
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPN +G +D + L + FA G ++K++ G L + +
Sbjct: 143 IVLSDMAPNTSGFAAVDQPRMIYLCELAVDFASQVLDEGGSLIVKVFQGEGSDALRKQMQ 202
Query: 199 RFYSQVKILKPPSSRSHSAELF 220
+ + +V+ +KP +SR+ S E++
Sbjct: 203 QTFRKVRSIKPAASRARSKEMY 224
>gi|427403734|ref|ZP_18894616.1| ribosomal RNA large subunit methyltransferase E [Massilia timonae
CCUG 45783]
gi|425717717|gb|EKU80673.1| ribosomal RNA large subunit methyltransferase E [Massilia timonae
CCUG 45783]
Length = 215
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 114/205 (55%), Gaps = 3/205 (1%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A+KE +R R+A+KL EID + K ++PG V+D G PGSW+Q +
Sbjct: 10 WLHDHINDPYVKLAQKEGFRARAAYKLKEIDEQEKLIKPGQVVVDLGCTPGSWAQYTRRK 69
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
+ G D G ++ +D LP+ PI V + DF + ++ +L +L K D+VLS
Sbjct: 70 LA--GADGGGINGTIIGLDILPMEPI-ADVQYIQGDFREEEVLTQLDEVLSGRKADLVLS 126
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D + L I F+ + KPG ++K + Q+ E +
Sbjct: 127 DMAPNLSGISHADAARMEHLIDLAIEFSQLHLKPGGGLVVKCFKDMGFTQILEKFRTEFK 186
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
VK +KP +SR S+E+FLLGRG K
Sbjct: 187 TVKQIKPKASRDKSSEIFLLGRGLK 211
>gi|444377627|ref|ZP_21176836.1| Cell division protein FtsJ [Enterovibrio sp. AK16]
gi|443678211|gb|ELT84883.1| Cell division protein FtsJ [Enterovibrio sp. AK16]
Length = 209
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 119/212 (56%), Gaps = 15/212 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YVQ+A+K+ +R R+ FKL EI K K L+PG+ ++D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYVQEAQKKGFRSRAIFKLDEIQGKDKLLKPGMTIVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ V G V++ D LP+ + G L + DF + + + L+ ++ D +D
Sbjct: 69 AVEQVGDSGQ--------VIACDILPMDSLPGVAFL-QGDFREEAVLNALLDRIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN +G D + +LA+ + R + P ++K++ G Q
Sbjct: 120 VVMSDMAPNMSGNLASDQPRAMYLVELALDMCREVLA---PNGSFIVKVFQGEGFDQYLA 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + VKI KP SSR+ S E++++ G+K
Sbjct: 177 EVRKMFKAVKIRKPDSSRARSREVYIVATGYK 208
>gi|127513763|ref|YP_001094960.1| 23S rRNA methyltransferase J [Shewanella loihica PV-4]
gi|158513475|sp|A3QGV3.1|RLME_SHELP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|126639058|gb|ABO24701.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella loihica PV-4]
Length = 209
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 115/214 (53%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS W++ F D YV+ ++K R R+AFK+ EI K K +RPG+ V+D GAAPG
Sbjct: 4 KKRTASSTRWMQEHFDDHYVKLSQKRGLRSRAAFKIEEIQQKDKLIRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ+AVKL G V++ D LP+ PI G L + DF + + + L+ +
Sbjct: 64 GWSQIAVKLAGETGK--------VIACDILPMDPIVGVDFL-QGDFREEKVLNALLERVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K+DVVLSDMAPN +G +D L + P +K++ G +
Sbjct: 115 DAKVDVVLSDMAPNMSGTGGVDQPRAMYLVELALDMCHQVLAPNGSFAVKVFQGEGFDEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+++ ++ VK KP SSR S E++L+ G+K
Sbjct: 175 MKAVREAFTTVKTRKPDSSRPRSREVYLVATGYK 208
>gi|421496523|ref|ZP_15943751.1| Ribosomal RNA large subunit methyltransferase E [Aeromonas media
WS]
gi|407184511|gb|EKE58340.1| Ribosomal RNA large subunit methyltransferase E [Aeromonas media
WS]
Length = 209
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 113/209 (54%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV+KA+K R R+ FK+ EI K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSTRWLKEHFDDHYVKKAQKLGLRSRAVFKIDEIQGKDKLLKPGMTVVDLGAAPGGWSQF 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A+ V KG V++ D LP+ I G L + DF + + L+ + DK+D
Sbjct: 69 AIDQVGD--------KGRVIACDILPMDSIAGVDFL-QGDFREETVLAALLARVGPDKVD 119
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G +++D L + + ++K++ G I
Sbjct: 120 VVMSDMAPNMSGTQQVDQARSMYLIELALDMCNQVLRSNGSFVVKVFQGEGFDAYLNEIR 179
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
R +S VKI KP SSR+ S E++++ GFK
Sbjct: 180 RLFSVVKIRKPDSSRARSREVYIVATGFK 208
>gi|71730963|gb|EAO33032.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Xylella fastidiosa
Ann-1]
Length = 213
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 115/207 (55%), Gaps = 9/207 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F+DP+V+KA+ E R R+A+KL EI + + LRP + V+D GAAPG WSQ
Sbjct: 6 SSQRWLKEHFSDPFVKKAQAEGMRSRAAYKLEEILKRDRILRPNMVVVDLGAAPGGWSQQ 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
K + G V+++D + + P+ G L + DF + +L +LK +D
Sbjct: 66 IRKQMGDSGR--------VIALDIVKMAPLVGIEFL-QGDFRDKAVLSQLEIMLKGQPVD 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMAPN +G+ MD + LA + FA + KPG LIK++ G +
Sbjct: 117 LVLSDMAPNKSGIDVMDQPRMMYLAELAMDFADIHVKPGGSFLIKLFHGVGSDGYIRQLR 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRG 225
Y +V I KP +SR S E+++LG G
Sbjct: 177 HRYKKVAIRKPLASRKRSPEVYILGDG 203
>gi|407714268|ref|YP_006834833.1| ribosomal RNA large subunit methyltransferase E [Burkholderia
phenoliruptrix BR3459a]
gi|407236452|gb|AFT86651.1| Ribosomal RNA large subunit methyltransferase E [Burkholderia
phenoliruptrix BR3459a]
Length = 220
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 119/209 (56%), Gaps = 5/209 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA-VK 81
WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D G++PGSWSQ A K
Sbjct: 10 WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYARNK 69
Query: 82 LVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
L D+++ G+ ++++D LP+ P+ V + DF + + +L ++ + ++D
Sbjct: 70 LAKGAQRDAEREGGIEGTIIALDILPMEPV-ADVHFIQGDFREDSVLVQLEELVGERQVD 128
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+ D I L + F+ + KP L+K + G Q+ E
Sbjct: 129 LVISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFK 188
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
R + V KP +SR S+E F+LG+ K
Sbjct: 189 RQFKVVAARKPKASRDKSSETFILGKHLK 217
>gi|91228945|ref|ZP_01262842.1| cell division protein FtsJ [Vibrio alginolyticus 12G01]
gi|91187505|gb|EAS73840.1| cell division protein FtsJ [Vibrio alginolyticus 12G01]
Length = 209
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIDEIQTKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G +++ D LP+ PI G L + DF + + L+ ++ +D
Sbjct: 69 AAKIVGDSGQ--------IIACDLLPMDPIAGVSFL-QGDFRDDAVLEALLERIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + + ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLARN---GSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDMFKAVKIRKPDSSRARSREVFVVATGYKG 209
>gi|452821067|gb|EME28102.1| ribosomal RNA large subunit methyltransferase E [Galdieria
sulphuraria]
Length = 439
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 25/229 (10%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W ++ D Y Q A E R R+A+KLLE+ + F++ V+D GAAPG WS V
Sbjct: 25 SSSRWKIQRRKDLYAQAAYNEGLRSRAAYKLLEMMEQFHFIQQTSVVVDLGAAPGGWSLV 84
Query: 79 A------------------------VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVL 114
A V ++ S G ++ +G ++SVD + PI GA +
Sbjct: 85 AKQYLELCSKVPWKVPLDELASVPQVNVMRSTGRLVRRTRGRLISVDISDMEPIAGATFI 144
Query: 115 SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS 174
+ DF + + Q R+ +L D++DVVLSDM PN +G++E+DH+ I +LA + FA+ +
Sbjct: 145 -QGDFCEQETQQRITKVLYGDEVDVVLSDMCPNTSGVKELDHERIIELAFSASHFAIHHL 203
Query: 175 KPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
G L KI+ G +L + + QVK ++P +S+S S+E ++L
Sbjct: 204 CNGGTFLCKIFQGAQEKRLNTFLEEHFVQVKRIRPKASKSESSECYILA 252
>gi|393776734|ref|ZP_10365028.1| 23s rrna methyltransferase [Ralstonia sp. PBA]
gi|392716091|gb|EIZ03671.1| 23s rrna methyltransferase [Ralstonia sp. PBA]
Length = 224
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 122/227 (53%), Gaps = 22/227 (9%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K K+ + WL DPYV+ A++E YR R+A+KL EID + K + PG ++D GAAPG
Sbjct: 5 KSKNKFNQSWLHDHMNDPYVKLAQREGYRARAAYKLKEIDEQDKLIHPGQVIVDLGAAPG 64
Query: 74 SWSQVA-VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV--- 129
SWSQ A KL +S + G ++++D LP+ P+ + F Q D +D V
Sbjct: 65 SWSQYARNKLADSPRAKDGRIDGAIIAIDLLPLEPV------ADVTFIQGDFRDDAVYRQ 118
Query: 130 ---TILK---DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183
T+L K+D+VLSDMAPN +G+ D I + + FA + KP L+K
Sbjct: 119 LEETVLAASGGSKVDLVLSDMAPNLSGVEAADAARIEHICELALEFAQAHLKPDGALLVK 178
Query: 184 IWDGRNRPQLEESITRFYSQVKIL---KPPSSRSHSAELFLLGRGFK 227
+ G Q+ + RF Q K++ KP +SR S+E F+LGR K
Sbjct: 179 CFHGSGYSQI---VKRFKDQFKVVAPRKPKASRDKSSETFILGRYLK 222
>gi|335420637|ref|ZP_08551674.1| putative cell division protein [Salinisphaera shabanensis E1L3A]
gi|334894373|gb|EGM32569.1| putative cell division protein [Salinisphaera shabanensis E1L3A]
Length = 205
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 119/212 (56%), Gaps = 10/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K + WL + DPYV+ A+K+NYR R+ +KL E+D + + L+ ++D GAAPG W
Sbjct: 3 KRSDTRRWLDKHRNDPYVRAAQKDNYRTRAVYKLAEVDERDQLLKSKQCIVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ + ++P+ V+++D+L + PIDG L+ DF + D L+ L D
Sbjct: 63 SQYCRR---------QRPQARVVALDRLDMKPIDGVDFLN-VDFAEQAGVDTLMETLGSD 112
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+VLSDMAPN TG+ D + QLA + + D +K++ G ++
Sbjct: 113 RVDLVLSDMAPNLTGIMVADQAGVMQLAELALDLCASVLDADGDLFMKVFQGEGFDEMLV 172
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + +V + KP +SR S E++LLG+G++
Sbjct: 173 DMRKRFRRVAVRKPKASRDASREMYLLGQGWR 204
>gi|334705610|ref|ZP_08521476.1| ribosomal RNA large subunit methyltransferase J [Aeromonas caviae
Ae398]
Length = 209
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 114/214 (53%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F D YV+KA+K R R+ FK+ EI K + L+PG+ V+D GAAPG
Sbjct: 4 KKRSPSSTRWLKEHFDDQYVKKAQKLGLRSRAVFKIDEIQGKDRLLKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ A+ V KG V++ D LP+ I G L + DF + + L+ +
Sbjct: 64 GWSQFAIDQVGD--------KGRVIACDILPMDSIAGVDFL-QGDFREETVLGALLERVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DK+DVV+SDMAPN +G +++D L + ++K++ G
Sbjct: 115 PDKVDVVMSDMAPNMSGTQQVDQARAMYLVELALDMCNQVLSSNGSFVVKVFQGEGFDAY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
I R +S VKI KP SSR+ S E++++ GFK
Sbjct: 175 LNEIRRLFSVVKIRKPDSSRARSREVYIVATGFK 208
>gi|423205497|ref|ZP_17192053.1| ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
AMC34]
gi|404624038|gb|EKB20883.1| ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
AMC34]
Length = 209
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV+KA+K R R+ FK+ EI K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSTRWLKEHFDDQYVKKAQKLGLRSRAVFKIDEIQGKDKLLKPGMTVVDLGAAPGGWSQF 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A+ V KG V++ D LP+ I G L + DF + + L+ + DK+D
Sbjct: 69 AIDQVGD--------KGRVIACDILPMDSIAGVDFL-QGDFREEAVLGALLARVGPDKVD 119
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G +++D L + + ++K++ G I
Sbjct: 120 VVMSDMAPNMSGTQQVDQARSMYLVELALDMCNQVLRADGSFVVKVFQGEGFDAYLNEIR 179
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +S VKI KP SSR+ S E++++ GFK
Sbjct: 180 KLFSAVKIRKPDSSRARSREVYIVATGFK 208
>gi|71279764|ref|YP_270127.1| 23S rRNA methyltransferase J [Colwellia psychrerythraea 34H]
gi|83305657|sp|Q47YJ3.1|RLME_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|71145504|gb|AAZ25977.1| ribosomal RNA large subunit methyltransferase J [Colwellia
psychrerythraea 34H]
Length = 209
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 113/210 (53%), Gaps = 9/210 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL F D YV+KA++ R R+ FKL EI+ K + ++PG+KV+D GAAPG WS+
Sbjct: 9 SSQRWLDEHFDDEYVKKAQRLGLRSRAVFKLEEINIKDRLIKPGMKVVDLGAAPGGWSEY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AVK+V KG V++ D LP+ I G L + DF + ++ D L+T + +D
Sbjct: 69 AVKVVGD--------KGQVVACDILPMDAIVGVDFL-EGDFREEEVLDALLTRINGKNID 119
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG D L + KP ++K++ G ++
Sbjct: 120 VVMSDMAANMTGNESADSARSMYLVELALDMCSQVLKPNGAFVVKVFQGAGFEDYMKATR 179
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ VK KP SSR+ S E++L+ G+KG
Sbjct: 180 AVFKAVKTRKPESSRARSREVYLVATGYKG 209
>gi|399154878|ref|ZP_10754945.1| 23S rRNA methyltransferase J [gamma proteobacterium SCGC
AAA007-O20]
Length = 195
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 113/205 (55%), Gaps = 11/205 (5%)
Query: 24 LKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLV 83
+ D YV+KA+KE YR R+ +KLLEI K + + G K+LD GAAPG WSQVA K+V
Sbjct: 1 MHEHLNDEYVKKAQKEGYRSRAVYKLLEIIEKSQIINKGDKILDLGAAPGGWSQVAAKIV 60
Query: 84 NSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD 143
G V++ D L I I G L + DFT+ + D L+T+ K +D+VLSD
Sbjct: 61 GKSGQ--------VIASDILSIEKISGVNFL-QGDFTEQSVYDELITLTKGSSIDIVLSD 111
Query: 144 MAPNATGMREMDHDLITQLAIAVIRFAV-TYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
MAPN +G +D LA I AV T SK G ++KI+ G ++ + +
Sbjct: 112 MAPNMSGQLSVDQPKSIYLAELAIDLAVKTLSKNG-HFIVKIFQGDGFDNYVKNARKVFK 170
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
+V I+KP +SR S E++LL K
Sbjct: 171 KVSIIKPKASRPRSKEVYLLASQLK 195
>gi|262163950|ref|ZP_06031689.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio mimicus VM223]
gi|262172288|ref|ZP_06039966.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio mimicus MB-451]
gi|449146630|ref|ZP_21777403.1| 23S rRNA methyltransferase J [Vibrio mimicus CAIM 602]
gi|261893364|gb|EEY39350.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio mimicus MB-451]
gi|262027478|gb|EEY46144.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio mimicus VM223]
gi|449077862|gb|EMB48823.1| 23S rRNA methyltransferase J [Vibrio mimicus CAIM 602]
Length = 209
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ +R R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSTRWLKEHFDDKYANEARKKGFRSRAIFKIEEIQNKDKLLKPGMTVVDLGAAPGGWSQF 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G V++ D LP+ I G L + DF + + + L+ ++ + +D
Sbjct: 69 AAKVVGEGGR--------VIACDLLPMESIAGVSFL-QGDFREEAVLNALLDRIQPEMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G +
Sbjct: 120 VVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDDYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + VKI KP SSRS S E+F++ G+KG
Sbjct: 177 AVRDLFKVVKIRKPDSSRSRSREVFIVATGYKG 209
>gi|317046734|ref|YP_004114382.1| ribosomal RNA large subunit methyltransferase J [Pantoea sp. At-9b]
gi|316948351|gb|ADU67826.1| ribosomal RNA large subunit methyltransferase J [Pantoea sp. At-9b]
Length = 209
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 124/222 (55%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLEEIQQGDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV--TI 131
WSQ V+L+ S G +++ D LP+ PI G DF Q D +D V T+
Sbjct: 64 GWSQYVVQLIGSSGR--------IIACDLLPMDPIVG------VDFLQGDFRDEAVLKTL 109
Query: 132 LK---DDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L+ D+K+ VV+SDMAPN +G +D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDEKVQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDILA---PGGSFVVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VKI KP +SRS S E++++ G K
Sbjct: 167 QGDGFDEYLREIRSLFTKVKIRKPDASRSRSREVYIVATGRK 208
>gi|431806404|ref|YP_007233305.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Liberibacter crescens BT-1]
gi|430800379|gb|AGA65050.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Liberibacter crescens BT-1]
Length = 231
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 116/211 (54%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL R DPYV +AK E +R RSA+KLL+I+ K ++ +++D GAAPGSWSQ+
Sbjct: 27 SSRHWLTRHINDPYVHQAKLEGWRARSAYKLLQINEKHHIIKHARRIVDLGAAPGSWSQI 86
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
+ KL S D + V ++D L + PI G V + K DF + + + + D
Sbjct: 87 SAKLSGSSNDDVR-----VAAIDILEMEPIPG-VKIFKNDFLDLENWEFIFEAIGGAP-D 139
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG ++ DH L + F + G D L+K + G + ++
Sbjct: 140 LVISDMASPVTGHQKTDHLRTMHLCEEAMYFTLKVLNEGGDFLVKTFQGGTECNILNTLK 199
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + QV +KP +SR S E+FLL +GFKGK
Sbjct: 200 KNFRQVIHVKPAASRPESVEMFLLAKGFKGK 230
>gi|126175447|ref|YP_001051596.1| 23S rRNA methyltransferase J [Shewanella baltica OS155]
gi|153001798|ref|YP_001367479.1| 23S rRNA methyltransferase J [Shewanella baltica OS185]
gi|160876531|ref|YP_001555847.1| 23S rRNA methyltransferase J [Shewanella baltica OS195]
gi|217972307|ref|YP_002357058.1| 23S rRNA methyltransferase J [Shewanella baltica OS223]
gi|373950578|ref|ZP_09610539.1| Ribosomal RNA large subunit methyltransferase E [Shewanella baltica
OS183]
gi|378709736|ref|YP_005274630.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
OS678]
gi|386323585|ref|YP_006019702.1| ribosomal RNA large subunit methyltransferase E [Shewanella baltica
BA175]
gi|386342190|ref|YP_006038556.1| ribosomal RNA large subunit methyltransferase E [Shewanella baltica
OS117]
gi|418025553|ref|ZP_12664531.1| Ribosomal RNA large subunit methyltransferase E [Shewanella baltica
OS625]
gi|189040333|sp|A3D7L4.1|RLME_SHEB5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040335|sp|A6WRH7.1|RLME_SHEB8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040336|sp|A9KZX9.1|RLME_SHEB9 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|254809559|sp|B8E6M4.1|RLME_SHEB2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|125998652|gb|ABN62727.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
OS155]
gi|151366416|gb|ABS09416.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
OS185]
gi|160862053|gb|ABX50587.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
OS195]
gi|217497442|gb|ACK45635.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
OS223]
gi|315268725|gb|ADT95578.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Shewanella baltica
OS678]
gi|333817730|gb|AEG10396.1| Ribosomal RNA large subunit methyltransferase E [Shewanella baltica
BA175]
gi|334864591|gb|AEH15062.1| Ribosomal RNA large subunit methyltransferase E [Shewanella baltica
OS117]
gi|353535165|gb|EHC04729.1| Ribosomal RNA large subunit methyltransferase E [Shewanella baltica
OS625]
gi|373887178|gb|EHQ16070.1| Ribosomal RNA large subunit methyltransferase E [Shewanella baltica
OS183]
Length = 209
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 114/209 (54%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS+ W+ F D YV+ A+K R R+AFKL EI K + +RPG+ V+D GAAPG WSQV
Sbjct: 9 SSNRWMLEHFDDHYVKLAQKMGLRSRAAFKLEEIQQKDQLIRPGMTVVDLGAAPGGWSQV 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AVKL +G V++ D LP+ PI G L + DF + + L+T + D K+D
Sbjct: 69 AVKLAGD--------RGKVIACDILPMDPIVGVDFL-QGDFREDKVLQALLTRVGDAKVD 119
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMAPN +G +D L + P +K++ G + +++
Sbjct: 120 VVLSDMAPNMSGSDSVDQPRAMYLVELALDMCHQVLAPNGCFAVKVFQGEGFDEYMKAVK 179
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ VK KP SSR+ S E++L+ G+K
Sbjct: 180 AVFKVVKTRKPDSSRARSREVYLVATGYK 208
>gi|332283363|ref|YP_004415274.1| ribosomal RNA large subunit methyltransferase j [Pusillimonas sp.
T7-7]
gi|330427316|gb|AEC18650.1| ribosomal RNA large subunit methyltransferase j [Pusillimonas sp.
T7-7]
Length = 211
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 118/205 (57%), Gaps = 4/205 (1%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
W+ + DPYV+ A+++ YR R+AFKL EI K ++PG V+D G+APGSWSQVA +
Sbjct: 10 WVMQHINDPYVKMAQQKGYRARAAFKLTEILDAEKLMQPGDIVVDLGSAPGSWSQVARER 69
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
+ G G ++++D LP+ PI G V + DF + + ++L +L D ++D+V+S
Sbjct: 70 LAGAG---GVVDGRIIALDMLPMEPIAG-VEFIQGDFREDIMLEQLKNLLGDAQVDLVIS 125
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D I + + FA + KP ++K + G Q+ ES R +
Sbjct: 126 DMAPNLSGVSSADSARIQHVCDLALDFACQHLKPEGALIVKAFHGSGFSQIVESFKRCFL 185
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
+V KP +SR S+E FL+ R K
Sbjct: 186 RVVERKPKASRDKSSETFLVARRLK 210
>gi|444425458|ref|ZP_21220899.1| 23S rRNA methyltransferase J [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444241320|gb|ELU52846.1| 23S rRNA methyltransferase J [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 209
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 116/213 (54%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+ G+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKIEEIQTKDKLLKSGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++ G +++ D LP+ PI G L + DF + D L+ ++ +D
Sbjct: 69 AANIIGEEGQ--------IIACDLLPMDPIAGVSFL-QGDFRDEAVLDALLERIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
V++SDMAPN G +D + +LA+ + R + P ++K++ G Q +
Sbjct: 120 VLMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDQFVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 EVRDMFKVVKIRKPDSSRARSREVFVVATGYKG 209
>gi|424809610|ref|ZP_18234987.1| 23S rRNA methyltransferase J [Vibrio mimicus SX-4]
gi|342323098|gb|EGU18884.1| 23S rRNA methyltransferase J [Vibrio mimicus SX-4]
Length = 239
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ +R R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 39 SSTRWLKEHFDDKYANEARKKGFRSRAIFKIEEIQNKDKLLKPGMTVVDLGAAPGGWSQF 98
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G V++ D LP+ I G L + DF + + + L+ ++ + +D
Sbjct: 99 AAKVVGEGGR--------VIACDLLPMESIAGVSFL-QGDFREEAVLNALLDRIQPEMVD 149
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G +
Sbjct: 150 VVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDDYVK 206
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + VKI KP SSRS S E+F++ G+KG
Sbjct: 207 AVRDLFKVVKIRKPDSSRSRSREVFIVATGYKG 239
>gi|315122262|ref|YP_004062751.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495664|gb|ADR52263.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 242
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 118/209 (56%), Gaps = 7/209 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SSH WL R DPYVQ+A+ E +R RSA+KL++I+ K + L P +++D G+APGSWSQV
Sbjct: 40 SSHRWLSRHINDPYVQQAQLEGWRARSAYKLIQINEKHRILHPSRRIVDLGSAPGSWSQV 99
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++ + D + ++++D L + PI G V K DF + + + + + D
Sbjct: 100 AARMTAAKSNDIR-----IVAIDILDMEPILG-VKFFKFDFLDLESWEFIHQAIGGNP-D 152
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA G R+ DH L A FA+ G D L+K + G + +
Sbjct: 153 LVLSDMAYPTIGHRKTDHLRTMSLCEAATFFALEMLNEGGDFLVKTFQGGTTQDILCLLK 212
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + +V +KP +SR+ S E+FLL +GFK
Sbjct: 213 KNFQKVIHIKPMASRAESVEMFLLAKGFK 241
>gi|56416831|ref|YP_153905.1| cell division protein [Anaplasma marginale str. St. Maries]
gi|222475196|ref|YP_002563612.1| cell division protein FtsJ [Anaplasma marginale str. Florida]
gi|254995031|ref|ZP_05277221.1| cell division protein (ftsJ) [Anaplasma marginale str. Mississippi]
gi|255003177|ref|ZP_05278141.1| cell division protein (ftsJ) [Anaplasma marginale str. Puerto Rico]
gi|255004308|ref|ZP_05279109.1| cell division protein (ftsJ) [Anaplasma marginale str. Virginia]
gi|269958781|ref|YP_003328569.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaplasma centrale str.
Israel]
gi|81359063|sp|Q5PAN0.1|RLME_ANAMM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|254809546|sp|B9KIP4.1|RLME_ANAMF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|56388063|gb|AAV86650.1| cell division protein [Anaplasma marginale str. St. Maries]
gi|222419333|gb|ACM49356.1| cell division protein (ftsJ) [Anaplasma marginale str. Florida]
gi|269848611|gb|ACZ49255.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaplasma centrale str.
Israel]
Length = 201
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 107/195 (54%), Gaps = 15/195 (7%)
Query: 36 AKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKG 95
AKK YR RSA+KL++ID K K L+ G VLD G+ PG W+QVA + V G K
Sbjct: 3 AKKHGYRSRSAYKLIDIDCKFKLLQRGRYVLDLGSCPGGWAQVAAERVAEGG------KA 56
Query: 96 LVLSVDKLPIYPIDGAVVLSKCDFTQPDIQ---DRLVTILKDDKLDVVLSDMAPNATGMR 152
V++VD P+ I DF Q D++ + L L+D K DVVLSDMAP + G R
Sbjct: 57 HVVAVDMAPMERIPNV------DFVQCDVEHSPELLRAALQDRKFDVVLSDMAPKSCGHR 110
Query: 153 EMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSS 212
++DH I L + AV + + G + KI G + S+ +++ V KP SS
Sbjct: 111 QVDHANIINLCEMALDLAVEFLRSGGSFVTKILQGEYEQEFRRSLQYYFASVTYFKPKSS 170
Query: 213 RSHSAELFLLGRGFK 227
RS S+E++L+G FK
Sbjct: 171 RSESSEIYLVGTKFK 185
>gi|392551925|ref|ZP_10299062.1| 23S rRNA methyltransferase J [Pseudoalteromonas spongiae
UST010723-006]
Length = 209
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K YR R+ FK+ E+D K K +RPGL V+D GAAPG WSQ
Sbjct: 9 SSKRWLKEHFDDVYANEARKLGYRSRAYFKIEELDKKDKLIRPGLTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A V + G V+S D LP+ P+ G L + DF + + D L++ + +D
Sbjct: 69 AADKVGDN--------GTVISCDILPMDPLPGVEFL-QGDFREEAVLDALLSRIDGKNVD 119
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G D L KP + +K++ G Q + +
Sbjct: 120 LVMSDMAPNMSGNNVTDQAGSMYLVELAFDMCHQVLKPNGNFAVKVFQGEGFDQFVKDLR 179
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ VKI KP SSR+ S E++++ G+K
Sbjct: 180 NSFKTVKIRKPDSSRARSREVYIVATGYK 208
>gi|323526825|ref|YP_004228978.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
CCGE1001]
gi|323383827|gb|ADX55918.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
CCGE1001]
Length = 220
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 119/209 (56%), Gaps = 5/209 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA-VK 81
WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D G++PGSWSQ A K
Sbjct: 10 WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYARNK 69
Query: 82 LVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
L D+++ G+ ++++D LP+ P+ V + DF + + +L ++ + ++D
Sbjct: 70 LAKGAQRDAEREGGIDGTIIALDILPMDPV-ADVHFIQGDFREDSVLVQLEELVGERQVD 128
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+ D I L + F+ + KP L+K + G Q+ E
Sbjct: 129 LVISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFK 188
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
R + V KP +SR S+E F+LG+ K
Sbjct: 189 RQFKVVAARKPKASRDKSSETFILGKHLK 217
>gi|411008248|ref|ZP_11384577.1| ribosomal RNA large subunit methyltransferase J [Aeromonas
aquariorum AAK1]
gi|423195544|ref|ZP_17182127.1| ribosomal RNA large subunit methyltransferase E [Aeromonas
hydrophila SSU]
gi|404633319|gb|EKB29868.1| ribosomal RNA large subunit methyltransferase E [Aeromonas
hydrophila SSU]
Length = 209
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 113/209 (54%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV+KA+K R R+ FK+ EI K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSTRWLKEHFDDQYVKKAQKLGLRSRAVFKIDEIQGKDKLLKPGMTVVDLGAAPGGWSQF 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A+ V KG V++ D LP+ I G L + DF + + L+ + DK+D
Sbjct: 69 AIDQVGD--------KGRVIACDILPMDSIAGVDFL-QGDFREETVLGALLERVGPDKVD 119
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G +++D L + + ++K++ G I
Sbjct: 120 VVMSDMAPNMSGTQQVDQARSMYLVELALDMCNQVLRSNGSFVVKVFQGEGFDIYLNEIR 179
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +S VKI KP SSR+ S E++++ GFK
Sbjct: 180 KLFSAVKIRKPDSSRARSREVYIVATGFK 208
>gi|15679761|ref|NP_276879.1| cell division protein J [Methanothermobacter thermautotrophicus
str. Delta H]
gi|9911011|sp|O27801.1|RLME_METTH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|2622903|gb|AAB86239.1| cell division protein J [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 211
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 125/212 (58%), Gaps = 18/212 (8%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
W + D Y + AKKENYR R+++KLL++++K K ++ G +VLD GAAPG WSQVA+
Sbjct: 5 WQAERKRDHYYRSAKKENYRSRASYKLLQLNNKYKLIKKGDRVLDLGAAPGGWSQVALDK 64
Query: 83 VNSHGYDSKQPKGLVLSVD--KLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVV 140
V GLV++VD ++ +P + + + DFT P+++D+++ L + DVV
Sbjct: 65 VGEE--------GLVVAVDLQRIKGFPAENFRAI-RGDFTDPEVKDKIIREL-GGRADVV 114
Query: 141 LSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200
+SD AP+ +G+R++DH L V+ A + LIK + G P+L+ I
Sbjct: 115 ISDAAPSLSGIRDIDHLRSVDLVENVLDIAYRVLDRKGNILIKAFQG---PELDRVIKEL 171
Query: 201 ---YSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ ++K KP SSR SAE++++GR FKGK
Sbjct: 172 RKDFWKLKTTKPASSRKASAEMYIVGRDFKGK 203
>gi|209694183|ref|YP_002262111.1| 23S rRNA methyltransferase J [Aliivibrio salmonicida LFI1238]
gi|226703281|sp|B6END5.1|RLME_ALISL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|208008134|emb|CAQ78276.1| ribosomal RNA large subunit methyltransferase J (cell division
protein FtsJ) [Aliivibrio salmonicida LFI1238]
Length = 209
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +A+K YR R+ FKL EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYVLEAQKRGYRSRAIFKLEEIQNKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV+ V G V++ D L + I G L + DF + + D L+ ++ D +D
Sbjct: 69 AVEQVGDSGQ--------VIACDILAMDSIAGVSFL-QGDFREEAVLDALLERIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN +G +D + +LA+ + R + P +K++ G + +
Sbjct: 120 VVMSDMAPNMSGNPSVDQPRSMYLVELALDMCRQVLA---PNGSFTVKVFQGESFDAYLQ 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + + VKI KP SSR+ S E++++ G+KG
Sbjct: 177 EVRKVFKVVKIRKPDSSRARSREVYIVATGYKG 209
>gi|330830896|ref|YP_004393848.1| ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
B565]
gi|406675886|ref|ZP_11083072.1| ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
AMC35]
gi|423202725|ref|ZP_17189304.1| ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
AER39]
gi|423208459|ref|ZP_17195013.1| ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
AER397]
gi|328806032|gb|AEB51231.1| Ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
B565]
gi|404614921|gb|EKB11900.1| ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
AER39]
gi|404618304|gb|EKB15224.1| ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
AER397]
gi|404626109|gb|EKB22919.1| ribosomal RNA large subunit methyltransferase E [Aeromonas veronii
AMC35]
Length = 209
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F D YV+KA+K R R+ FK+ EI K + L+ G+ V+D GAAPG
Sbjct: 4 KKRSPSSTRWLKEHFDDQYVKKAQKMGLRSRAVFKIDEIQGKDRLLKHGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ AV+ V G V++ D LP+ PI G L + DF + + L+ +
Sbjct: 64 GWSQFAVEQVGDSGR--------VIACDILPMDPIAGVDFL-QGDFREETVLGALLERVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DK+DVV+SDMAPN +G +++D L + + ++K++ G
Sbjct: 115 PDKVDVVMSDMAPNMSGTQQVDQARAMYLVELALDMCNQVLRSDGSFVVKVFQGEGFDAY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
I + +S VKI KP SSR+ S E++++ GFK
Sbjct: 175 LNEIRKLFSAVKIRKPDSSRARSREVYIVATGFK 208
>gi|258623149|ref|ZP_05718160.1| cell division protein FtsJ [Vibrio mimicus VM573]
gi|258625327|ref|ZP_05720227.1| cell division protein FtsJ [Vibrio mimicus VM603]
gi|258582393|gb|EEW07242.1| cell division protein FtsJ [Vibrio mimicus VM603]
gi|258584569|gb|EEW09307.1| cell division protein FtsJ [Vibrio mimicus VM573]
Length = 264
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 119/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ +R R+ FK+ EI +K K L+PG+ V+D GAAPG WSQ
Sbjct: 64 SSTRWLKEHFDDKYANEARKKGFRSRAIFKIEEIQNKDKLLKPGMTVVDLGAAPGGWSQF 123
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G V++ D LP+ I G L + DF + + + L+ ++ + +D
Sbjct: 124 AAKVVGEGGR--------VIACDLLPMESIAGVSFL-QGDFREEAVLNALLDRIQPEMVD 174
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G +
Sbjct: 175 VVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDDYVK 231
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + VKI KP SSRS S E+F++ G+KG
Sbjct: 232 AVRDLFKVVKIRKPDSSRSRSREVFIVATGYKG 264
>gi|374724488|gb|EHR76568.1| ribosomal RNA large subunit methyltransferase E [uncultured marine
group II euryarchaeote]
Length = 245
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 114/204 (55%), Gaps = 9/204 (4%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
W++ D + ++AK YR RSAFKL +I + +R G +LD G PG W+QV ++L
Sbjct: 5 WIENHKRDSWRRQAKASGYRSRSAFKLKQIQERFNLIREGDVILDVGCHPGGWAQVGMEL 64
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
V G+ VL VD P P++GA++L+ D T+P Q+R++T LK L+ ++S
Sbjct: 65 VGESGF--------VLGVDLEPCQPVEGALLLTG-DITEPHTQERMLTELKGRPLNAIVS 115
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
D++PN TG +MD + L V FA+ G K++ G +L + + F+S
Sbjct: 116 DISPNITGKWDMDQAVAMTLVAQVFDFALPLLCKGGSFTTKLFQGVGVEELIDGVKPFFS 175
Query: 203 QVKILKPPSSRSHSAELFLLGRGF 226
V+ P +SR+ S+E++L+ R F
Sbjct: 176 DVRRYAPHASRNASSEVYLVCRNF 199
>gi|448737824|ref|ZP_21719857.1| 23S rRNA methyltransferase J [Halococcus thailandensis JCM 13552]
gi|445802786|gb|EMA53087.1| 23S rRNA methyltransferase J [Halococcus thailandensis JCM 13552]
Length = 251
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 107/196 (54%), Gaps = 12/196 (6%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D Y KAK++ YR RSA+KL ++D V+D GAAPG W QVA +
Sbjct: 5 DEYYNKAKQQGYRSRSAYKLQQLDETADLFADRSTVIDLGAAPGGWLQVAAE-------- 56
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT 149
+ P+G V+ VD+ I IDG V + D T D++ L + + DVVLSDMAPN +
Sbjct: 57 -RAPEGRVVGVDRQRIEAIDG-VETRRGDLTDEDVRAELKADVG--EADVVLSDMAPNMS 112
Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
G +DH LA + A PG D ++K++DGR+ LE I + V+ ++P
Sbjct: 113 GEYNLDHARSVHLARQALDVAREVLTPGGDLVVKVFDGRDLDDLEADIEEAFEYVRTVRP 172
Query: 210 PSSRSHSAELFLLGRG 225
+SR S+EL+L+G+G
Sbjct: 173 DASRDESSELYLVGKG 188
>gi|437999839|ref|YP_007183572.1| 23S rRNA (uridine2552-2'-O)-methyltransferase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451812743|ref|YP_007449196.1| ribosomal RNA large subunit methyltransferase E [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429339073|gb|AFZ83495.1| 23S rRNA (uridine2552-2'-O)-methyltransferase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451778712|gb|AGF49592.1| ribosomal RNA large subunit methyltransferase E [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 211
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 121/210 (57%), Gaps = 5/210 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEI-DSKIKFLRPGLKVLDCGAAPGSWSQ 77
SS W+ + DPYV+ A++ YR R+AFKL+E+ +++ R G +V+D G++PGSWSQ
Sbjct: 6 SSKKWINQHINDPYVKLAQQRGYRSRAAFKLIELLETENLSFRNGARVIDLGSSPGSWSQ 65
Query: 78 VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL 137
V + ++ S ++++D LP+ PI G V + DF DI D+L L + +
Sbjct: 66 VMYEQLSKSNMVSNSR---IIALDLLPMDPIPG-VEFIQGDFRDQDIIDKLEKTLSNQLV 121
Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
D+V+SDMAPN +G+RE+D I + V+ FAV + K +IK + G Q+
Sbjct: 122 DIVISDMAPNLSGIREVDSVRICHVCELVLDFAVKHLKRSGVIIIKSFHGSGFSQIVYLY 181
Query: 198 TRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+F+ +V KP SSR S+E FL+ R K
Sbjct: 182 KKFFKRVLECKPKSSRYKSSETFLIARNLK 211
>gi|294634507|ref|ZP_06713042.1| ribosomal RNA large subunit methyltransferase J [Edwardsiella tarda
ATCC 23685]
gi|451966459|ref|ZP_21919712.1| 23S rRNA methyltransferase RlmE [Edwardsiella tarda NBRC 105688]
gi|291092021|gb|EFE24582.1| ribosomal RNA large subunit methyltransferase J [Edwardsiella tarda
ATCC 23685]
gi|451314760|dbj|GAC65074.1| 23S rRNA methyltransferase RlmE [Edwardsiella tarda NBRC 105688]
Length = 208
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 114/219 (52%), Gaps = 19/219 (8%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K RPG+ V+D GAAPG
Sbjct: 3 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQGTDKIFRPGMTVVDLGAAPG 62
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI-- 131
WSQ V + KG V++ D LP+ PI G DF Q D +D LV
Sbjct: 63 GWSQYVVTQIGD--------KGRVIACDLLPMDPIVG------VDFLQGDFRDELVLAAL 108
Query: 132 ---LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188
+ D K+ VV+SDMAPN +G +D L + A PG ++K++ G
Sbjct: 109 MERVGDAKVQVVMSDMAPNMSGTPSVDIPRAMYLVELALEMAKDVLAPGGSFVVKVFQGE 168
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ I +++VKI KP +SR+ S E++++ G K
Sbjct: 169 GFDEYLGQIRSLFTKVKIRKPEASRARSREVYIVATGRK 207
>gi|345006507|ref|YP_004809360.1| ribosomal RNA large subunit methyltransferase E [halophilic
archaeon DL31]
gi|344322133|gb|AEN06987.1| Ribosomal RNA large subunit methyltransferase E [halophilic
archaeon DL31]
Length = 260
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 114/202 (56%), Gaps = 13/202 (6%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D Y +AK++ YR RSA+KL ++D + G V+D GAAPG W QVA + V
Sbjct: 5 DDYYNRAKQQGYRARSAYKLKQLDEEATLFEEGDTVVDLGAAPGGWLQVAAEKVG----- 59
Query: 90 SKQPKGLVLSVDKLPIYPID-GAVVLSKCDFTQPDIQDRLVTIL--KDDK--LDVVLSDM 144
P+G V+ VD I ++ V + D T+ +DRL L +DD+ +DVV+SDM
Sbjct: 60 ---PQGRVVGVDFQSIDDLEPHQVKTMRGDMTEEQTRDRLRRELGVEDDERVVDVVISDM 116
Query: 145 APNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV 204
APN TG E+DH LA A+ Y KP +D ++K++ GR+ + + + V
Sbjct: 117 APNMTGEYELDHARSVHLARTAFETALKYLKPDSDFVVKVFQGRDLDEFRSDVEAEFQYV 176
Query: 205 KILKPPSSRSHSAELFLLGRGF 226
+ + PP+SR S+E++L+G+G+
Sbjct: 177 RTIAPPASRDASSEVYLVGKGY 198
>gi|295677139|ref|YP_003605663.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
CCGE1002]
gi|295436982|gb|ADG16152.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
CCGE1002]
Length = 220
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 119/209 (56%), Gaps = 5/209 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA-VK 81
WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D G++PGSWSQ A K
Sbjct: 10 WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYARNK 69
Query: 82 LVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
L ++++ G+ ++++D LP+ P+ V + DF + + +L ++ ++D
Sbjct: 70 LAGGSQRNAEREGGIDGTIIALDILPMEPV-ADVHFIQGDFREDSVLVQLEELVGARQVD 128
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+ D I L + FA ++ KP L+K + G Q+ E
Sbjct: 129 LVISDMAPNLSGVAIADAARIEHLCDLALEFAQSHLKPDGALLVKCFHGSGYSQIVEKFK 188
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
R + V KP +SR S+E F+LG+ K
Sbjct: 189 RQFKVVAARKPKASRDKSSETFILGKHLK 217
>gi|269103413|ref|ZP_06156110.1| 23S rRNA methylase [Photobacterium damselae subsp. damselae CIP
102761]
gi|268163311|gb|EEZ41807.1| 23S rRNA methylase [Photobacterium damselae subsp. damselae CIP
102761]
Length = 209
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 115/212 (54%), Gaps = 15/212 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV +A+K+ YR R+ FK+ EI K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYVLEAQKKGYRSRALFKIEEIQQKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +V G V++ D LP+ P+ G L + DF + + D L+ ++ D +D
Sbjct: 69 AAGVVGDDGQ--------VIACDILPMDPLPGVSFL-QGDFREEAVLDALLERIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VVLSDMAPN +G D + +LA+ + R + P +K++ G Q
Sbjct: 120 VVLSDMAPNMSGNLASDQPRAMYLVELALDMCRQVLA---PNGSFAVKVFQGEGFDQYLA 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
I + VKI KP SSR S E++++ G+K
Sbjct: 177 DIRSMFKVVKIRKPDSSRDRSREVYIVATGYK 208
>gi|336449999|ref|ZP_08620456.1| 23S rRNA methylase [Idiomarina sp. A28L]
gi|336283156|gb|EGN76363.1| 23S rRNA methylase [Idiomarina sp. A28L]
Length = 209
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 113/214 (52%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F D YVQKA+K+ R R+ FKL EI + K LRPG V+D GAAPG
Sbjct: 4 KKRSASSSRWLKEHFDDQYVQKAQKQGLRSRAVFKLEEIQKRDKILRPGQTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ + + G V++ D L + PI G L + DF + + + L+ +
Sbjct: 64 GWSQYVAAMQDGSGE--------VIACDILEMDPIAGVEFL-QGDFREEAVLNALLNRIG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+DV+LSDMAPN +G +D L + KPG ++K++ G
Sbjct: 115 GATVDVLLSDMAPNFSGTDAVDQPRSMYLVELALEMCKQVLKPGGAFVVKVFQGEGSDVF 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + ++ VK+ KP SSR+ S E++L+ G+K
Sbjct: 175 LKEVRQAFTSVKVRKPDSSRARSREVYLVASGYK 208
>gi|307546735|ref|YP_003899214.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas elongata DSM
2581]
gi|307218759|emb|CBV44029.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas elongata DSM
2581]
Length = 225
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 113/206 (54%), Gaps = 9/206 (4%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
W+K F D YVQ++ ++ YR R+++KLL +D K + LRPG+ V+D GAAPG WSQVA +
Sbjct: 29 WMKEHFDDRYVQQSWQDGYRSRASYKLLALDEKDRLLRPGMTVIDLGAAPGGWSQVAAEK 88
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
V G V++ D L + + G V + DFT+ + + ++ + D +D+V+S
Sbjct: 89 VGDEGR--------VIASDILEMDALAG-VDFVQGDFTEDSVLEEILARIGDRPVDLVMS 139
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +GM +D L + A PG L K++ G + + +
Sbjct: 140 DMAPNMSGMAAIDQPQAMYLVELALDLARQTLSPGGVFLAKVFQGEGFDAYLKELRAGFK 199
Query: 203 QVKILKPPSSRSHSAELFLLGRGFKG 228
+V KP +SR+ S E++LL GF+G
Sbjct: 200 RVVTRKPEASRARSREVYLLAEGFRG 225
>gi|343505243|ref|ZP_08742823.1| 23S rRNA methyltransferase J [Vibrio ichthyoenteri ATCC 700023]
gi|343509172|ref|ZP_08746461.1| 23S rRNA methyltransferase J [Vibrio scophthalmi LMG 19158]
gi|343514831|ref|ZP_08751897.1| 23S rRNA methyltransferase J [Vibrio sp. N418]
gi|342799339|gb|EGU34911.1| 23S rRNA methyltransferase J [Vibrio sp. N418]
gi|342805433|gb|EGU40698.1| 23S rRNA methyltransferase J [Vibrio scophthalmi LMG 19158]
gi|342808431|gb|EGU43586.1| 23S rRNA methyltransferase J [Vibrio ichthyoenteri ATCC 700023]
Length = 209
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 117/213 (54%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ YR R+ FK+ EI +K K L+ G+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYANEARKKGYRSRAYFKMEEIQTKDKLLKNGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G +++ D LP+ PI G L + DF + + L+ ++ +D
Sbjct: 69 AAKIVGDEGQ--------IIACDLLPMDPIAGVSFL-QGDFRDDAVLEALLDKIQPSMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + + ++K++ G Q +
Sbjct: 120 VVMSDMAPNIAGNNSVDQPRAMYLVELALDMCRQVLATN---GSFVVKVFQGEGFDQYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I + VKI KP SSR+ S E+F++ G+KG
Sbjct: 177 DIRDMFKTVKIRKPDSSRARSREVFIVATGYKG 209
>gi|253991509|ref|YP_003042865.1| ribosomal RNA large subunit methyltransferase [Photorhabdus
asymbiotica]
gi|211638387|emb|CAR67009.1| ribosomal rna large subunit methyltransferase j (ec 2.1.1.-) (rrn
(uridine-2'-o-)-methyltransferase) (23s rrna m2u255
methyltransferase) [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782959|emb|CAQ86124.1| ribosomal RNA large subunit methyltransferase [Photorhabdus
asymbiotica]
Length = 209
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 123/222 (55%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YV +A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVLQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV--TI 131
WSQ AV +N +G V++ D LP+ PI G DF Q D +D LV T+
Sbjct: 64 GWSQYAVSQINENGR--------VIACDLLPMDPIVG------VDFLQGDFRDELVLKTL 109
Query: 132 LK---DDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L+ D+K+ VV+SDMAPN +G +D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDNKVQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLA---PGGSFIVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I ++ VKI KP +SR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTNVKIRKPDASRARSREVYIVATGRK 208
>gi|359785311|ref|ZP_09288464.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas sp. GFAJ-1]
gi|359297426|gb|EHK61661.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas sp. GFAJ-1]
Length = 215
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 13/224 (5%)
Query: 9 LKEVPKGKDHS----SHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLK 64
+++ P + HS S+ W K F D YV+++ ++ YR R+++KLLE+D K K R G+
Sbjct: 1 MQQKPPSRKHSVSKTSNNWKKEHFDDQYVKQSWQDGYRSRASYKLLEMDEKDKLFRAGMT 60
Query: 65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDI 124
V+D GAAPG WSQ+A + V P+G+V++ D L + + G V + DFT+ +
Sbjct: 61 VIDLGAAPGGWSQIAAEKVG--------PEGVVIASDILEMDALAG-VDFIQGDFTEERV 111
Query: 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184
+ ++ L + +D+V+SDMAPN +GM +D L + A PG L K+
Sbjct: 112 LNAILERLGNRPVDLVMSDMAPNMSGMAAIDQPQAMYLVELALELARETLPPGGRFLAKV 171
Query: 185 WDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ G +++ +++V KP +SR+ S E++ L GF+G
Sbjct: 172 FQGEGFDAYLKALRGSFNRVVTRKPDASRARSREVYFLAEGFRG 215
>gi|409722538|ref|ZP_11269984.1| 23S rRNA methyltransferase J [Halococcus hamelinensis 100A6]
gi|448722128|ref|ZP_21704667.1| 23S rRNA methyltransferase J [Halococcus hamelinensis 100A6]
gi|445790119|gb|EMA40789.1| 23S rRNA methyltransferase J [Halococcus hamelinensis 100A6]
Length = 251
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 107/196 (54%), Gaps = 12/196 (6%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D Y KAK++ YR RSA+KL ++D G V+D GAAPG W QVA + V +
Sbjct: 5 DEYYNKAKQQGYRSRSAYKLQQLDETADLFDDGDTVIDLGAAPGGWLQVAAERVGT---- 60
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT 149
G V+ VD+ I +DG V + D T D+Q L + + DVVLSDMAPN T
Sbjct: 61 -----GRVVGVDRQRIDSLDG-VETVRGDLTDEDVQAYLAERVG--EADVVLSDMAPNMT 112
Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
G ++DH LA A+ PG D + K++DGR+ LE I + V+ ++P
Sbjct: 113 GEYDLDHARSVYLARQAFDVALDVLAPGGDFVAKVFDGRDLDALEADIDTEFEYVQTVRP 172
Query: 210 PSSRSHSAELFLLGRG 225
+SR S+EL+L+G+G
Sbjct: 173 DASRDESSELYLVGKG 188
>gi|374263768|ref|ZP_09622315.1| ribosomal RNA large subunit methyltransferase J [Legionella
drancourtii LLAP12]
gi|363535890|gb|EHL29337.1| ribosomal RNA large subunit methyltransferase J [Legionella
drancourtii LLAP12]
Length = 206
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 118/209 (56%), Gaps = 11/209 (5%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+ F D YV+KA+ E YR R+ +KL E+D K L+PG+ V+D GAAPG W+Q
Sbjct: 6 SSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEVDEKESLLKPGMTVVDLGAAPGGWTQ- 64
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-DGAVVLSKCDFTQPDIQDRLVTILKDDKL 137
+ + Q +G ++++D LP+ + D V+L DF + ++ +L+ ++ + +
Sbjct: 65 -------YVSERMQGRGHIIALDILPMDSLPDVDVILG--DFREDEVLQKLMNLIPERSV 115
Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
D++LSDMAPN +G +D L FA KPG LIK++ G +L +
Sbjct: 116 DLLLSDMAPNMSGTTAIDIPRAMYLVELAFDFAEKMLKPGGSMLIKVFHGSGFDELVKQA 175
Query: 198 TRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+ +V I KP +SR+ S E +LL +G+
Sbjct: 176 KASFDRVVIRKPSASRARSKETYLLAKGY 204
>gi|448726837|ref|ZP_21709226.1| 23S rRNA methyltransferase J [Halococcus morrhuae DSM 1307]
gi|445793345|gb|EMA43925.1| 23S rRNA methyltransferase J [Halococcus morrhuae DSM 1307]
Length = 251
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 107/196 (54%), Gaps = 12/196 (6%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D Y KAK++ YR RSA+KL ++D V+D GAAPG W QVA +
Sbjct: 5 DEYYNKAKQQGYRSRSAYKLQQLDETADLFTDRSTVIDLGAAPGGWLQVAAE-------- 56
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT 149
+ P+G V+ VD+ I IDG V + D T D++ L + + DVVLSDMAPN +
Sbjct: 57 -RAPEGRVVGVDRQRIEAIDG-VETRRGDLTDEDVRADLKADIG--EADVVLSDMAPNMS 112
Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
G ++DH LA + A PG D +K++DGR+ LE I + V+ ++P
Sbjct: 113 GEYDLDHARSVHLARQALDVAREVLTPGGDLAVKVFDGRDLDGLEADIEEAFEYVRTVRP 172
Query: 210 PSSRSHSAELFLLGRG 225
+SR S+EL+L+G+G
Sbjct: 173 DASRDESSELYLVGKG 188
>gi|422682149|ref|ZP_16740416.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|331011490|gb|EGH91546.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
Length = 195
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 111/193 (57%), Gaps = 9/193 (4%)
Query: 36 AKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKG 95
A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG WSQV +L+ G +
Sbjct: 2 AQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIGGQG---RLIAS 58
Query: 96 LVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMD 155
+L +D +P V + DFT+ I ++++ + + ++D+V+SDMAPN +G+ +D
Sbjct: 59 DILEMDSIP------DVTFIQGDFTEDKILEQILEAVGNTQVDLVISDMAPNMSGLSAVD 112
Query: 156 HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSH 215
L + A +PG D LIK++ G + I + + +V++ KP SSR
Sbjct: 113 MPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLFDKVQMRKPSSSRDR 172
Query: 216 SAELFLLGRGFKG 228
S E +LL RGF+G
Sbjct: 173 SREQYLLARGFRG 185
>gi|117618251|ref|YP_857802.1| ribosomal RNA large subunit methyltransferase J [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|143459211|sp|A0KNF1.1|RLME_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|117559658|gb|ABK36606.1| ribosomal RNA large subunit methyltransferase J [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 209
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 113/209 (54%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YV+KA+K R R+ FK+ EI K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSTRWLKEHFDDQYVKKAQKLGLRSRAVFKIDEIQGKDKLLKPGMTVVDLGAAPGGWSQF 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A+ V KG V++ D LP+ I G L + DF + + L+ + DK+D
Sbjct: 69 AIDQVGD--------KGRVIACDILPMDSIAGVDFL-QGDFREETVLGALLERVGPDKVD 119
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMAPN +G +++D L + + ++K++ G I
Sbjct: 120 VVMSDMAPNMSGTQQVDQARSMYLVELALDMCNQVLRANGSFVVKVFQGEGFDIYLNEIR 179
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ ++ VKI KP SSR+ S E++++ GFK
Sbjct: 180 KLFTAVKIRKPDSSRARSREVYIVATGFK 208
>gi|422629062|ref|ZP_16694268.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330937938|gb|EGH41725.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 195
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 111/193 (57%), Gaps = 9/193 (4%)
Query: 36 AKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKG 95
A+K+ YR R+++KLLEI K K +RPG+ V+D GAAPG WSQV +L+ G +
Sbjct: 2 AQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIGGQG---RLIAS 58
Query: 96 LVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMD 155
+L +D +P V + DFT+ I ++++ + + ++D+V+SDMAPN +G+ +D
Sbjct: 59 DILEMDSIP------DVTFIQGDFTEDAILEQILEAVGNTQVDLVISDMAPNMSGLSAVD 112
Query: 156 HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSH 215
L + A +PG D LIK++ G + I + + +V++ KP SSR
Sbjct: 113 MPRAMFLCELALDLAGRVLRPGGDFLIKVFQGEGFDVYHKDIRKLFDKVQMRKPSSSRDR 172
Query: 216 SAELFLLGRGFKG 228
S E +LL RGF+G
Sbjct: 173 SREQYLLARGFRG 185
>gi|209517186|ref|ZP_03266031.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. H160]
gi|209502322|gb|EEA02333.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. H160]
Length = 220
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 119/209 (56%), Gaps = 5/209 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA-VK 81
WL DPYV+ A++E YR R+A+KL EID + K +RPG ++D G++PGSWSQ A K
Sbjct: 10 WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGSSPGSWSQYARNK 69
Query: 82 LVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
L + ++++ G+ ++++D LP+ P+ V + DF + + +L ++ ++D
Sbjct: 70 LASGAQRNAEREGGIDGTIIALDILPMEPV-ADVHFIQGDFREDSVLVQLEELVGARQVD 128
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+ D I L + FA + KP L+K + G Q+ E
Sbjct: 129 LVISDMAPNLSGVAIADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFK 188
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
R + V KP +SR S+E F+LG+ K
Sbjct: 189 RQFKVVGARKPKASRDKSSETFILGKHLK 217
>gi|238918417|ref|YP_002931931.1| ribosomal RNA large subunit methyltransferase J, putative
[Edwardsiella ictaluri 93-146]
gi|259494565|sp|C5BFB0.1|RLME_EDWI9 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|238867985|gb|ACR67696.1| ribosomal RNA large subunit methyltransferase J, putative
[Edwardsiella ictaluri 93-146]
Length = 208
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 113/219 (51%), Gaps = 19/219 (8%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K RPG+ V+D GAAPG
Sbjct: 3 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQGTDKIFRPGMTVVDLGAAPG 62
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI-- 131
WSQ V + KG V++ D LP+ PI G DF Q D +D LV
Sbjct: 63 GWSQYVVTQIGD--------KGRVIACDLLPMDPIVG------VDFLQGDFRDELVLAAL 108
Query: 132 ---LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188
+ D K+ VV+SDMAPN +G +D L A PG ++K++ G
Sbjct: 109 MERVGDAKVQVVMSDMAPNMSGTPSVDIPRAMYLVELAFEMAKDVLAPGGSFVVKVFQGE 168
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ I +++VKI KP +SR+ S E++++ G K
Sbjct: 169 GFDEYLGQIRSLFTKVKIRKPEASRARSREVYIVATGRK 207
>gi|393764342|ref|ZP_10352954.1| 23S rRNA methyltransferase J [Alishewanella agri BL06]
gi|392604972|gb|EIW87871.1| 23S rRNA methyltransferase J [Alishewanella agri BL06]
Length = 209
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 114/214 (53%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F D +VQKA+K R R++FKL EI + K +RPG+ V+D G+APG
Sbjct: 4 KKRSASSTRWLKEHFDDHFVQKAQKLGLRSRASFKLEEIQQQDKLIRPGMNVVDLGSAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SWSQ +V +G V++ D LP+ P+ G L + DF + + + L++ +
Sbjct: 64 SWSQYVAGIVGQ--------QGTVIACDILPMDPLAGVAFL-QGDFREEAVLNALLSRIG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+DVVLSDMAPN +G D L + K ++K++ G Q
Sbjct: 115 GKNVDVVLSDMAPNMSGNDTTDQARSIYLVELALDMCHKVLKQNGSFVVKVFQGDGFEQY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + ++ VKI KP SSR+ S E +++ GFK
Sbjct: 175 LKDVRAVFNTVKIRKPESSRARSRETYIVATGFK 208
>gi|387887741|ref|YP_006318039.1| ribosomal RNA large subunit methyltransferase J [Escherichia
blattae DSM 4481]
gi|386922574|gb|AFJ45528.1| ribosomal RNA large subunit methyltransferase J [Escherichia
blattae DSM 4481]
Length = 208
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLEEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV--TI 131
WSQ V L+ G +++ D LP+ PI G DF Q D +D LV +
Sbjct: 64 GWSQYVVSLIGGSGR--------IIACDLLPMDPIVG------VDFLQGDFRDELVLKAL 109
Query: 132 LK---DDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG + ++K++
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDVLA---PGGNFVVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I ++ VK+ KP SSR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTTVKVRKPDSSRARSREVYIVATGRK 208
>gi|253999580|ref|YP_003051643.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylovorus
glucosetrophus SIP3-4]
gi|253986259|gb|ACT51116.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylovorus
glucosetrophus SIP3-4]
Length = 207
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 123/213 (57%), Gaps = 19/213 (8%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S W++ D +V++A+++ YR R+A+KL+EID K + ++PG+ ++D GA PGSW
Sbjct: 3 RTRTSKGWMQEHVNDEFVKRAQRDGYRARAAYKLMEIDDKDQLIKPGMTIVDLGATPGSW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVAV+ + G ++++D L + I G DF Q D ++ V ++
Sbjct: 63 SQVAVQRLKGQGR--------IIALDLLEMAAIPG------VDFIQGDFREDAVLFQLEE 108
Query: 136 KL-----DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
KL D+V++DMAPN +G+ +D L + F++ + KPG + L+K++ G
Sbjct: 109 KLNNRPIDLVIADMAPNISGISSVDQANAAYLTELALEFSLKWLKPGGNFLVKVFIGSGF 168
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLG 223
++ +++ + +V KP +SR S+E++LLG
Sbjct: 169 DEIMKTMRLGFDKVVTRKPKASRDRSSEVYLLG 201
>gi|414594240|ref|ZP_11443879.1| ribosomal RNA large subunit methyltransferase E [Escherichia
blattae NBRC 105725]
gi|403194830|dbj|GAB81531.1| ribosomal RNA large subunit methyltransferase E [Escherichia
blattae NBRC 105725]
Length = 212
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 8 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLEEIQQSDKLFKPGMTVVDLGAAPG 67
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV--TI 131
WSQ V L+ G +++ D LP+ PI G DF Q D +D LV +
Sbjct: 68 GWSQYVVSLIGGSGR--------IIACDLLPMDPIVGV------DFLQGDFRDELVLKAL 113
Query: 132 LK---DDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG + ++K++
Sbjct: 114 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDVLA---PGGNFVVKVF 170
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I ++ VK+ KP SSR+ S E++++ G K
Sbjct: 171 QGEGFDEYLREIRSLFTTVKVRKPDSSRARSREVYIVATGRK 212
>gi|262401666|ref|ZP_06078232.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio sp. RC586]
gi|262352083|gb|EEZ01213.1| cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Vibrio sp. RC586]
Length = 209
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 118/213 (55%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D Y +A+K+ +R R+ FK+ EI +K K L+ G+ V+D GAAPG WSQ
Sbjct: 9 SSTRWLKEHFDDKYANEARKKGFRSRAIFKIEEIQNKDKLLKAGMTVVDLGAAPGGWSQF 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G V++ D LP+ I G L + DF + + + L+ ++ + +D
Sbjct: 69 AAKVVGDSGR--------VIACDLLPMESIAGVSFL-QGDFREEAVLNALLERIQPEMVD 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN G +D + +LA+ + R + P ++K++ G +
Sbjct: 120 VVMSDMAPNMAGNLSVDQPRAMYLVELALDMCRQVLA---PNGSFVVKVFQGEGFDDYVK 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ + VKI KP SSRS S E+F++ G+KG
Sbjct: 177 AVRDLFKAVKIRKPDSSRSRSREVFIVATGYKG 209
>gi|293412551|ref|ZP_06655274.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
B354]
gi|291469322|gb|EFF11813.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
B354]
Length = 209
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV--TI 131
WSQ V + KG +++ D LP+ PI G DF Q D +D LV T+
Sbjct: 64 GWSQYVVTQIGG--------KGRIIACDLLPMDPIVG------VDFLQGDFRDELVMKTL 109
Query: 132 LK---DDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA---PGGSFVVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VK+ KP SSR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK 208
>gi|237808997|ref|YP_002893437.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Tolumonas auensis DSM
9187]
gi|259494571|sp|C4L8Y1.1|RLME_TOLAT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|237501258|gb|ACQ93851.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Tolumonas auensis DSM
9187]
Length = 209
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 114/214 (53%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F D YVQ+A+K+ R R+ FK+ EI K K ++ G+ V+D GAAPG
Sbjct: 4 KKRTASSTRWLKEHFDDKYVQQAQKQGLRSRAVFKIDEIQQKDKLIKQGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQ V+ V HG V++ D LP+ PI G L + DF + + L+ +
Sbjct: 64 GWSQFCVEQVGPHGR--------VIACDILPMDPIAGVDFL-QGDFREEAVLSALLGRVG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ K+D++LSDMAPN +G +D L + ++K++ G +
Sbjct: 115 EQKVDIILSDMAPNMSGTPAVDQPRSMYLVELALEMCKQVLAAKGSFVVKVFQGAGFEEY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + +S VKI KP SSRS S E++++ GFK
Sbjct: 175 LKEVRSLFSVVKIRKPDSSRSRSREVYIVATGFK 208
>gi|397665389|ref|YP_006506927.1| 23S rRNA methyltransferase [Legionella pneumophila subsp.
pneumophila]
gi|395128800|emb|CCD07020.1| 23S rRNA methyltransferase [Legionella pneumophila subsp.
pneumophila]
Length = 206
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 115/211 (54%), Gaps = 9/211 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F D YV+KA+ E YR R+ +KL EID K ++PG+ V+D GAAPG W
Sbjct: 3 RTKSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+Q A + + G ++++D LP+ + A + DF + ++ L+ ++
Sbjct: 63 TQYASEKMRGSGR--------LVALDILPMDALPNAEFIL-GDFREDNVLQELINLIPQR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD++LSDMAPN +G +D L FA KPG + L+KI+ G +L +
Sbjct: 114 TLDLLLSDMAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+ +V I KP +SRS S E +LL +G+
Sbjct: 174 QARASFEKVVIRKPSASRSRSKETYLLAKGY 204
>gi|386815648|ref|ZP_10102866.1| 23S rRNA Um-2552 2'-O-methyltransferase [Thiothrix nivea DSM 5205]
gi|386420224|gb|EIJ34059.1| 23S rRNA Um-2552 2'-O-methyltransferase [Thiothrix nivea DSM 5205]
Length = 206
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 116/212 (54%), Gaps = 9/212 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ SS+ WL F+D YV+KA++E YR R+ +KL EI K + L+PG+KV+D GAAPG
Sbjct: 2 ARSKSSNRWLGEHFSDEYVKKAQQEGYRSRAVYKLKEIQEKDRILQPGMKVVDLGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQ A ++V KG +++ D LP+ P+ V DF + + ++ +L +
Sbjct: 62 WSQYATQVVGQ--------KGRIVASDILPLDPLP-FVEFVLGDFREDAVLAEILGLLGE 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+K D+V+SDMAPN +G+ +D L + A K L+K++ G
Sbjct: 113 EKADLVISDMAPNMSGVDAVDQPRAIHLCELALDMAKQVLKVNGAFLVKLFQGDGSEAFL 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+ + VK+ KP +SR S E+++L +GF
Sbjct: 173 RDVRSSFRTVKVRKPAASRPRSREVYVLAQGF 204
>gi|119471556|ref|ZP_01613970.1| 23S rRNA methyltransferase [Alteromonadales bacterium TW-7]
gi|359449944|ref|ZP_09239415.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20480]
gi|119445499|gb|EAW26785.1| 23S rRNA methyltransferase [Alteromonadales bacterium TW-7]
gi|358044257|dbj|GAA75664.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20480]
Length = 209
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 115/214 (53%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F D YVQ+A+K+ +R R+ FKL E+ ++ K LRPG+ V+D GAAPG
Sbjct: 4 KKQSASSQRWLKEHFDDKYVQEAQKKGWRSRAVFKLDEVQNRDKLLRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SWSQ + V KG V++ D LP+ + G L + DF + + D L+ +
Sbjct: 64 SWSQYLAEKVGD--------KGQVVACDILPMDSLAGVDFL-QGDFREEAVLDALLKRID 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+DVVLSDMAPN +G +D L + K ++K++ G Q
Sbjct: 115 GKNVDVVLSDMAPNMSGNNSVDQAGSMYLVELALDMCNQVLKKNGAFIVKVFQGEGFDQY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + VKI KP +SR+ S E++++ G+K
Sbjct: 175 LQEVRNSFKAVKIRKPDASRARSREVYIVATGYK 208
>gi|114330999|ref|YP_747221.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosomonas eutropha
C91]
gi|122314099|sp|Q0AHC6.1|RLME_NITEC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|114308013|gb|ABI59256.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrosomonas eutropha C91]
Length = 206
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 113/205 (55%), Gaps = 9/205 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
+S W+K D +V+KA E YR R+A+KL EI + PG+ V+D GA+PGSWSQV
Sbjct: 6 TSRAWIKAHINDNFVRKANHEGYRSRAAYKLQEIAERDALFSPGMTVVDLGASPGSWSQV 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A++ V P G V ++D L + + GA + + DF + + L +L + D
Sbjct: 66 ALESVG--------PTGKVFALDMLDMQSLPGATFI-QGDFRENGVLAALEKVLDGKRAD 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDM+PN TG+R D LA + F + PG + L+K++ G + + +
Sbjct: 117 LVISDMSPNLTGIRVSDQAHGMYLAELALMFCREHLNPGENFLVKVFQGSDFEAFRQLMQ 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
+++V I KP +SR S EL+LLG
Sbjct: 177 ADFAKVVIRKPKASRDRSKELYLLG 201
>gi|91784538|ref|YP_559744.1| ribosomal RNA large subunit methyltransferase [Burkholderia
xenovorans LB400]
gi|122970262|sp|Q13W47.1|RLME_BURXL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91688492|gb|ABE31692.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia xenovorans
LB400]
Length = 220
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 117/209 (55%), Gaps = 5/209 (2%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA-VK 81
WL DPYV+ A++E YR R+A+KL EID + K +R G ++D G+ PGSWSQ A K
Sbjct: 10 WLHDHINDPYVKMAQREGYRARAAYKLKEIDEQDKLIRAGQVIVDLGSTPGSWSQYARNK 69
Query: 82 LVNSHGYDSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
L D+++ G+ ++++D LP+ PI V + DF + + +L ++ + ++D
Sbjct: 70 LAKGAQRDAEREGGIDGTIIALDLLPMEPI-ADVHFIQGDFREDSVIAQLEELVGERQVD 128
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G+ D I L + F+ + KP L+K + G Q+ E
Sbjct: 129 LVISDMAPNLSGVAVADAARIEHLCDLALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFK 188
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
R + V KP +SR S+E F+LG+ K
Sbjct: 189 RQFRVVAARKPKASRDKSSETFILGKHLK 217
>gi|311277847|ref|YP_003940078.1| ribosomal RNA large subunit methyltransferase J [Enterobacter
cloacae SCF1]
gi|308747042|gb|ADO46794.1| ribosomal RNA large subunit methyltransferase J [Enterobacter
cloacae SCF1]
Length = 209
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 116/219 (52%), Gaps = 19/219 (8%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV--TI 131
WSQ AV + +G +++ D LP+ PI G DF Q D +D LV +
Sbjct: 64 GWSQYAVTQIGGNGR--------IIACDLLPMDPIVG------VDFLQGDFRDELVLKAL 109
Query: 132 LK---DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188
L+ D K+ VV+SDMAPN +G +D L ++ PG L+K++ G
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALQMCRDVLAPGGSFLVKVFQGE 169
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ I ++ VK+ KP SSR+ S E++++ G K
Sbjct: 170 GFDEYLREIRSLFTTVKVRKPDSSRARSREVYIVATGRK 208
>gi|254298037|ref|ZP_04965490.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 406e]
gi|386862241|ref|YP_006275190.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 1026b]
gi|403518214|ref|YP_006652347.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei BPC006]
gi|418387743|ref|ZP_12967579.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 354a]
gi|418538837|ref|ZP_13104439.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 1026a]
gi|418541371|ref|ZP_13106855.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 1258a]
gi|418547615|ref|ZP_13112759.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 1258b]
gi|418553774|ref|ZP_13118582.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 354e]
gi|157807431|gb|EDO84601.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei 406e]
gi|385347122|gb|EIF53792.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 1026a]
gi|385358213|gb|EIF64233.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 1258a]
gi|385360428|gb|EIF66360.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 1258b]
gi|385371174|gb|EIF76377.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 354e]
gi|385376048|gb|EIF80766.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 354a]
gi|385659369|gb|AFI66792.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
pseudomallei 1026b]
gi|403073857|gb|AFR15437.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
pseudomallei BPC006]
Length = 210
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 113/202 (55%), Gaps = 5/202 (2%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAV-KLVNSHGY 88
DPYV+ A++E YR R+A+KL EID + K +RPG ++D GAAPGSWSQ A KL
Sbjct: 7 DPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKLAQGKRR 66
Query: 89 DSKQPKGL---VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMA 145
D+ + G+ ++++D LP+ P+ V + DF + + +L +L +D+V+SDMA
Sbjct: 67 DAVREGGIDGTIIALDMLPMEPV-ADVHFIQGDFREESVLHQLEEVLAGRAVDLVISDMA 125
Query: 146 PNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVK 205
PN +G+ D I + + FA + KP L+K + G Q+ E + V
Sbjct: 126 PNLSGVAVADAARIEHVCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTVA 185
Query: 206 ILKPPSSRSHSAELFLLGRGFK 227
KP +SR S+E F+LGR K
Sbjct: 186 PRKPKASRDKSSETFILGRHLK 207
>gi|440285999|ref|YP_007338764.1| 23S rRNA Um-2552 2'-O-methyltransferase [Enterobacteriaceae
bacterium strain FGI 57]
gi|440045521|gb|AGB76579.1| 23S rRNA Um-2552 2'-O-methyltransferase [Enterobacteriaceae
bacterium strain FGI 57]
Length = 209
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 114/219 (52%), Gaps = 19/219 (8%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQAAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT--- 130
WSQ V + KG +++ D LP+ PI G DF Q D +D LV
Sbjct: 64 GWSQYVVTQIGG--------KGRIIACDLLPMDPIVG------VDFLQGDFRDELVMKAL 109
Query: 131 --ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188
+ D K+ VV+SDMAPN +G +D L + A PG + ++K++ G
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMARDVLAPGGNFVVKVFQGE 169
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ I +++VK+ KP SSR+ S E++++ G K
Sbjct: 170 GFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK 208
>gi|407697683|ref|YP_006822471.1| ribosomal RNA large subunit methyltransferase E [Alcanivorax
dieselolei B5]
gi|407255021|gb|AFT72128.1| Ribosomal RNA large subunit methyltransferase E [Alcanivorax
dieselolei B5]
Length = 205
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 115/208 (55%), Gaps = 9/208 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F D +V +A+ E YR R++FKLLEI K K R G++VLD GAAPG W
Sbjct: 3 RSKSSQRWLREHFDDHWVARAQAEGYRSRASFKLLEIHEKDKLFRSGMRVLDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+QVA +LV S +G V++ D L + PI V + DF + + +++ L
Sbjct: 63 AQVAGRLVGS--------RGTVVASDILAMDPIPD-VAFIQGDFREEAVYQQILDSLGGH 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+D+V+SDMAPN +G R +D LA + A + +P L+K++ G +
Sbjct: 114 KVDLVMSDMAPNMSGNRAVDLPRAMYLAELALDMAESVLEPDGVFLVKVFQGEGFDEYRR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLG 223
S+ + +V KP +SR S E++ LG
Sbjct: 174 SLQDRFRRVVSRKPAASRPRSNEVYQLG 201
>gi|397163426|ref|ZP_10486889.1| ribosomal RNA large subunit methyltransferase J [Enterobacter
radicincitans DSM 16656]
gi|396094892|gb|EJI92439.1| ribosomal RNA large subunit methyltransferase J [Enterobacter
radicincitans DSM 16656]
Length = 208
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV--TI 131
WSQ AV + +G +++ D LP+ PI G DF Q D +D LV +
Sbjct: 64 GWSQYAVTQIGGNGR--------IIACDLLPMDPIVG------VDFLQGDFRDELVLKAL 109
Query: 132 LK---DDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG L+K++
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLA---PGGSFLVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VK+ KP SSR+ S E++++ G K
Sbjct: 167 QGEGFDEYLTEIRSMFTKVKVRKPDSSRARSREVYIVATGRK 208
>gi|118602395|ref|YP_903610.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|143461559|sp|A1AW32.1|RLME_RUTMC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|118567334|gb|ABL02139.1| 23S rRNA Um-2552 2'-O-methyltransferase [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 207
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 113/207 (54%), Gaps = 9/207 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
K SS W+ D +V+KA+K YR RS +KL+E+ +K KF++ G KVLD GAAPG W
Sbjct: 3 KKGSSGRWMSEHINDEFVKKAQKSGYRSRSVYKLIEVINKDKFIKLGDKVLDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQVA+K+V G V++ D L I PIDG L + DFT+ + + L+ I
Sbjct: 63 SQVAIKIVGKSGQ--------VIASDILDIKPIDGVDFL-RGDFTKDSVYETLLDITMSK 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
K+DVVLSDMAPN +G +D L + A+ P +K++ G + +
Sbjct: 114 KVDVVLSDMAPNMSGQSSIDIPKSMYLCELALDMAIKTLTPLGYFFVKVFQGNGFNEFVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLL 222
+S V I KP +S+ S E++LL
Sbjct: 174 LCRSSFSFVTIRKPKASKLRSKEVYLL 200
>gi|197287223|ref|YP_002153095.1| 23S rRNA methyltransferase J [Proteus mirabilis HI4320]
gi|227357082|ref|ZP_03841452.1| ribosomal RNA large subunit methyltransferase J (cell division
protein FtsJ) [Proteus mirabilis ATCC 29906]
gi|425070193|ref|ZP_18473307.1| ribosomal RNA large subunit methyltransferase E [Proteus mirabilis
WGLW6]
gi|425074017|ref|ZP_18477122.1| ribosomal RNA large subunit methyltransferase E [Proteus mirabilis
WGLW4]
gi|226705299|sp|B4F2B2.1|RLME_PROMH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|194684710|emb|CAR46685.1| ribosomal RNA large subunit methyltransferase J (cell division
protein FtsJ) [Proteus mirabilis HI4320]
gi|227162774|gb|EEI47737.1| ribosomal RNA large subunit methyltransferase J (cell division
protein FtsJ) [Proteus mirabilis ATCC 29906]
gi|404594428|gb|EKA95010.1| ribosomal RNA large subunit methyltransferase E [Proteus mirabilis
WGLW4]
gi|404595709|gb|EKA96245.1| ribosomal RNA large subunit methyltransferase E [Proteus mirabilis
WGLW6]
Length = 209
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 122/222 (54%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+AKK+ +R R+ FKL EI +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAKKKGFRSRAWFKLEEIQQSDNIFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT--- 130
WSQ V+ + + KG +++ D LP+ PI G DF Q D +D LV
Sbjct: 64 GWSQYVVQQLGN--------KGRIIACDLLPMDPIVG------VDFLQGDFRDELVLKAL 109
Query: 131 --ILKDDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ D+K+ VV+SDMAPN +G +D + +LA+ + R + PG ++K++
Sbjct: 110 LDRVGDNKVQVVMSDMAPNMSGTPAVDIPRSMYLVELALDMCRDVLA---PGGSFIVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VK+ KP +SRS S E++++ G K
Sbjct: 167 QGEGFDEYLGQIRSLFTKVKVRKPDASRSRSREVYIVATGRK 208
>gi|261856557|ref|YP_003263840.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halothiobacillus
neapolitanus c2]
gi|261837026|gb|ACX96793.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halothiobacillus
neapolitanus c2]
Length = 209
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 116/211 (54%), Gaps = 9/211 (4%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
+ +SS WL F D +V +AK+E YR R+ +KL+E++ + +FL+PG +V+D GAAPG
Sbjct: 2 ARSNSSQRWLAEHFRDEFVLRAKREGYRSRAVYKLMELNERDRFLKPGQRVVDLGAAPGG 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
W+Q A ++V G+ + ++D LP+ V+ + DF+ ++ L +L D
Sbjct: 62 WTQYAAQVVGDRGH--------IFALDLLPMDHFAHTTVI-QGDFSSEEVLAHLTALLGD 112
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+D+V+SDMAPN +G+ +D LA + F KP + K++ G L
Sbjct: 113 APVDLVISDMAPNMSGVETVDIPRAMYLAELALDFCHHMLKPEGAFVTKVFQGEGFDALM 172
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRG 225
++ + V + KP +SR S E++L+ RG
Sbjct: 173 KNARSAFKSVVVRKPKASRPRSREVYLVARG 203
>gi|422319362|ref|ZP_16400437.1| ribosomal RNA large subunit methyltransferase J [Achromobacter
xylosoxidans C54]
gi|317405975|gb|EFV86253.1| ribosomal RNA large subunit methyltransferase J [Achromobacter
xylosoxidans C54]
Length = 210
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGS 74
K+ S W+ + DPYV+ A+++ YR R+AFKL+EI K LR G V+D G+APGS
Sbjct: 2 AKNKFSKDWIHQHINDPYVKMAQQKGYRARAAFKLIEILDTEKLLRRGDLVVDLGSAPGS 61
Query: 75 WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134
WSQVA + + G G ++++D LP+ P+ G V + DF + DI +L ++
Sbjct: 62 WSQVARERLAGPG---GVVDGRIIALDMLPMEPVAG-VEFIQGDFREDDILKQLEDMVGS 117
Query: 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194
+D+V+SDMAPN +G+ D I + + F++ + KP ++K + G Q+
Sbjct: 118 RAVDLVISDMAPNLSGVGIADAARIQHVCELAMEFSLAHLKPNGALIVKAFHGTGFSQIV 177
Query: 195 ESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
ES + + +V KP +SR S+E FL+ R K
Sbjct: 178 ESYKQHFKRVVERKPKASRDKSSETFLVARDLK 210
>gi|350562020|ref|ZP_08930857.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349780338|gb|EGZ34673.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 208
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 119/216 (55%), Gaps = 10/216 (4%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
+PK + SS WLK F D +V +A+++ YR R+ FKL EID + + L GL+V+D GAA
Sbjct: 1 MPK-RSKSSQRWLKEHFDDRFVARAQQQGYRSRAVFKLEEIDRRDRLLHRGLRVVDLGAA 59
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
PG WSQ A V P G +++ D LP+ PI G +++ DF + + +R++
Sbjct: 60 PGGWSQYAADRVG--------PTGRIVASDILPMDPIPGVSIVT-GDFRENAVLERILEA 110
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L D+ D+VLSDMAPN +G +D L + A+ KP D L+K++ G+
Sbjct: 111 LGDEPADLVLSDMAPNLSGTDAVDQPRAIHLCELALDLALRVLKPNGDFLVKLFQGQGSD 170
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + +V + KP +SR S E+++L R +
Sbjct: 171 DYLRELRLRFRRVVVRKPEASRPRSREVYVLARELR 206
>gi|354599199|ref|ZP_09017216.1| Ribosomal RNA large subunit methyltransferase E [Brenneria sp.
EniD312]
gi|353677134|gb|EHD23167.1| Ribosomal RNA large subunit methyltransferase E [Brenneria sp.
EniD312]
Length = 209
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV--TI 131
WSQ V + KG +++ D LP+ PI G DF Q D +D +V +
Sbjct: 64 GWSQYVVTQIGG--------KGRIIACDILPMDPIVG------VDFLQGDFRDEVVLKAL 109
Query: 132 LK---DDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L+ DDK+ VV+SDMAPN +G +D + +LA+ + R + PG L+K++
Sbjct: 110 LERVGDDKVQVVMSDMAPNMSGTPAVDIPKSMYLVELALDMCRDVLA---PGGSFLVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VKI KP +SR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTKVKIRKPDASRARSREVYIVATGRK 208
>gi|240949042|ref|ZP_04753394.1| 23S rRNA methyltransferase J [Actinobacillus minor NM305]
gi|307261051|ref|ZP_07542733.1| Cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|240296555|gb|EER47178.1| 23S rRNA methyltransferase J [Actinobacillus minor NM305]
gi|306869353|gb|EFN01148.1| Cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 208
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 118/216 (54%), Gaps = 15/216 (6%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL F D +VQKA K+ R R+ FKL EI + +PG+ V+D GAAPG W
Sbjct: 5 RSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAPGGW 64
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ AV + S KG +++ D L + PI G L + DF + + + L+ + DD
Sbjct: 65 SQYAVTQIGS--------KGRIIACDILDMNPIVGVDFL-QGDFREESVLNALLERVGDD 115
Query: 136 KLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
+DVV+SDMAPN +GM +D + +LA+ + R + P ++K++ G +
Sbjct: 116 MVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLA---PKGSFVVKVFQGEGFDE 172
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I ++ VK+ KP +SR S E++++ G+KG
Sbjct: 173 YLRDIRAMFTTVKVRKPEASRDRSREVYIVATGYKG 208
>gi|339482110|ref|YP_004693896.1| Ribosomal RNA large subunit methyltransferase E [Nitrosomonas sp.
Is79A3]
gi|338804255|gb|AEJ00497.1| Ribosomal RNA large subunit methyltransferase E [Nitrosomonas sp.
Is79A3]
Length = 205
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 117/209 (55%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
+S W+K D +V++AKK+ YR R+A+KLLEI + LRPG+ V+D GAAPGSWSQV
Sbjct: 6 TSKAWMKEHVNDFFVKQAKKDGYRSRAAYKLLEISERDHILRPGMIVVDLGAAPGSWSQV 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A V + KG V++VD L + P+ G V + DF + L L + + D
Sbjct: 66 ASHKVGN--------KGEVIAVDILDMSPLPG-VKFIQSDFREEHAVLELRKHLGEHQPD 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDM+PN +G+ D LA + F++ G + L+K++ GR+ Q +
Sbjct: 117 LVISDMSPNISGIVVSDQARSMYLAELALAFSMEQLNYGGNFLVKVFQGRDFEQFLCDMR 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ V I KP +SR S EL+LLG G K
Sbjct: 177 AGFKSVLIRKPKASRDRSNELYLLGLGKK 205
>gi|30248542|ref|NP_840612.1| FtsJ cell division protein [Nitrosomonas europaea ATCC 19718]
gi|81436182|sp|Q820A2.1|RLME_NITEU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|30138428|emb|CAD84438.1| FtsJ cell division protein [Nitrosomonas europaea ATCC 19718]
Length = 206
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 111/205 (54%), Gaps = 9/205 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
+S W+K D +V+KA E YR R+A+KL EI PG+ V+D GA PGSWSQV
Sbjct: 6 TSRAWIKAHINDNFVRKANHEGYRSRAAYKLREIAEHDALFVPGMTVVDLGAVPGSWSQV 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A++ V P G V ++D L + P+ G + + DF + ++ L L + D
Sbjct: 66 ALESVG--------PTGKVFALDMLDMQPLPGMTFI-QGDFRENEVLAMLEAALGGKRAD 116
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDM+PN TG+R D LA + F + PG + L+K++ G + + +
Sbjct: 117 LVISDMSPNLTGIRVSDQAQGMYLAELALIFCREHLNPGKNFLVKVFQGSDFEAFRQMMQ 176
Query: 199 RFYSQVKILKPPSSRSHSAELFLLG 223
+S+V I KP +SR S EL+LLG
Sbjct: 177 TDFSKVVIRKPKASRDRSKELYLLG 201
>gi|114778047|ref|ZP_01452947.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Mariprofundus ferrooxydans PV-1]
gi|114551653|gb|EAU54206.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Mariprofundus ferrooxydans PV-1]
Length = 220
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 116/209 (55%), Gaps = 12/209 (5%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEI--DSKIKFLRPGLKVLDCGAAPGSWSQVAV 80
W +R DP+V++A+KE R R+AFKL EI + +K + + V+D G APGSWS V
Sbjct: 16 WFQRHSNDPHVKRAQKEGKRSRAAFKLTEILDEHGLKISKNAV-VVDLGCAPGSWS---V 71
Query: 81 KLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVV 140
+L G P G+V+ +D LP+ I G V L + DF PD Q L L+ +D+V
Sbjct: 72 ELARRVG-----PGGIVIGIDLLPLDGITG-VTLIQGDFDSPDGQAALAEALQGRMVDLV 125
Query: 141 LSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200
+SDMAP G + +D + L + FA Y +PG D L+K + G + +
Sbjct: 126 VSDMAPEMAGDKLVDQMRMIGLNEMTLHFARQYLRPGGDILMKTFMGEGYDAFRKELGLS 185
Query: 201 YSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ ++K +KP +SR S+E FLLGR FK +
Sbjct: 186 FKKIKNIKPAASRKTSSEFFLLGREFKAE 214
>gi|307252148|ref|ZP_07534047.1| Cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860448|gb|EFM92462.1| Cell division protein FtsJ/ribosomal RNA large subunit
methyltransferase J [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 208
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 118/216 (54%), Gaps = 15/216 (6%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL F D +VQKA K+ R R+ FKL EI + +PG+ V+D GAAPG W
Sbjct: 5 RSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAPGGW 64
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ AV + S KG +++ D L + PI G L + DF + + + L+ + DD
Sbjct: 65 SQYAVTQIGS--------KGRIIACDILDMNPIVGVDFL-QGDFREESVLNALLERVGDD 115
Query: 136 KLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
+DVV+SDMAPN +GM +D + +LA+ + R + P ++K++ G +
Sbjct: 116 MVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLA---PKGSFVVKVFQGEGFDE 172
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I ++ VK+ KP +SR S E++++ G+KG
Sbjct: 173 YLRDIRAMFTAVKVRKPEASRDRSREVYIVATGYKG 208
>gi|307129377|ref|YP_003881393.1| cell division protein FtsJ [Dickeya dadantii 3937]
gi|306526906|gb|ADM96836.1| Cell division protein ftsJ / Ribosomal RNA large subunit
methyltransferase J [Dickeya dadantii 3937]
Length = 209
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI + +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQTDRLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV--TI 131
WSQ V + KG +++ D LP+ PI G DF Q D +D LV T+
Sbjct: 64 GWSQYVVSQIGG--------KGRIIACDLLPMDPIVG------VDFLQGDFRDELVLKTL 109
Query: 132 LK---DDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L+ D+K+ VV+SDMAPN +G E+D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDEKVQVVMSDMAPNMSGTPEVDIPRAMYLVELALDMCRDILA---PGGSFVVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I ++ VKI KP +SR+ S E++++ G K
Sbjct: 167 QGVGFDEYLREIRSLFTTVKIRKPDASRARSREVYIVATGRK 208
>gi|336317269|ref|ZP_08572136.1| 23S rRNA methylase [Rheinheimera sp. A13L]
gi|335878569|gb|EGM76501.1| 23S rRNA methylase [Rheinheimera sp. A13L]
Length = 209
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 114/214 (53%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ +DP+VQKA+K R R+AFKL EI K K ++ G+ V+D G+APG
Sbjct: 4 KKRSGSSSRWLQEHVSDPFVQKAQKLGLRSRAAFKLDEIQDKDKLIKTGMTVVDLGSAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SWS A +LV G V++ D LP+ P+ G L + DF + + + L+ +
Sbjct: 64 SWSARAAELVGQ--------AGCVVACDILPMDPLAGVAFL-QGDFREEAVLNALLERIG 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+DVVLSDMAPN +G +D L + K ++K++ G
Sbjct: 115 GRNVDVVLSDMAPNMSGNSTVDQSRSMYLVELALEMCNNVLKKNGSFVVKVFHGEGFEPF 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + ++ V+I KP SSR+ S+E +++ GFK
Sbjct: 175 VQQVRSVFTTVRIRKPDSSRARSSETYIVATGFK 208
>gi|288575930|ref|ZP_05977888.2| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
ATCC 25996]
gi|288566590|gb|EFC88150.1| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
ATCC 25996]
Length = 184
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 110/189 (58%), Gaps = 9/189 (4%)
Query: 36 AKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKG 95
A+K+ YR R+A+KLLEI+ K K ++PG + D G+APGSWSQVA KLV + G
Sbjct: 2 AQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLVGNSGR------- 54
Query: 96 LVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMD 155
V ++D LP+ I+G V + DF + D+ + T+L D LD+V+ DMAPN +G D
Sbjct: 55 -VFALDILPMDEIEG-VSFIQGDFRENDVLAQFETLLDDRPLDLVICDMAPNMSGNAVTD 112
Query: 156 HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSH 215
L + FAV + K G L+K++ G + ++ + V+ KP +SR+
Sbjct: 113 QARSFYLCELALDFAVNHLKTGGSFLVKVFQGAGYQEYMAAMREIFGIVQTRKPEASRNR 172
Query: 216 SAELFLLGR 224
S+E++LLG+
Sbjct: 173 SSEIYLLGK 181
>gi|269137756|ref|YP_003294456.1| 23S rRNA methyltransferase J [Edwardsiella tarda EIB202]
gi|387866500|ref|YP_005697969.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Edwardsiella tarda FL6-60]
gi|267983416|gb|ACY83245.1| 23S rRNA methyltransferase J [Edwardsiella tarda EIB202]
gi|304557813|gb|ADM40477.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Edwardsiella tarda FL6-60]
Length = 208
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 114/219 (52%), Gaps = 19/219 (8%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K RPG+ V+D GAAPG
Sbjct: 3 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQGSDKIFRPGMTVVDLGAAPG 62
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV---- 129
WSQ V + KG +++ D LP+ PI G DF Q D +D LV
Sbjct: 63 GWSQYVVTQIGD--------KGRIIACDLLPMDPIVG------VDFLQGDFRDELVLGAL 108
Query: 130 -TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188
+ D K+ VV+SDMAPN +G +D L + A PG ++K++ G
Sbjct: 109 MERVGDAKVQVVMSDMAPNMSGTPSVDIPRSMYLVELALEMAKDVLAPGGSFVVKVFQGE 168
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ I +++VKI KP +SR+ S E++++ G K
Sbjct: 169 GFDEYLGQIRSLFTKVKIRKPDASRARSREVYIVATGRK 207
>gi|329297291|ref|ZP_08254627.1| 23S rRNA methyltransferase J [Plautia stali symbiont]
Length = 209
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDR-----L 128
WSQ V+ + S G +++ D LPI PI G DF Q D +D L
Sbjct: 64 GWSQYVVQQIGSGGR--------IIACDLLPIDPIGG------VDFLQGDFRDEAVLKAL 109
Query: 129 VTILKDDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ + D K+ VV+SDMAPN +G +D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDQKVQVVMSDMAPNMSGTPAVDIPRSMYLVELALEMCRDVLA---PGGSFVVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VKI KP +SRS S E++++ G K
Sbjct: 167 QGDGFDEYLREIRSLFTKVKIRKPDASRSRSREVYIVATGRK 208
>gi|313673338|ref|YP_004051449.1| 23S rRNA um-2552 2'-o-methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940094|gb|ADR19286.1| 23S rRNA Um-2552 2'-O-methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 196
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 115/201 (57%), Gaps = 15/201 (7%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D + +KAK E YR R+++KLLE++ K K R VLD GAAPG WSQVA++L+
Sbjct: 6 DSFYKKAKLEGYRSRASYKLLELNQKYKLFRKNDAVLDVGAAPGGWSQVALQLLGE---- 61
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDR--LVTILK-DDKLDVVLSDMAP 146
KG+V++VD L I P++ + F + DI+D L I K D+V+SD+AP
Sbjct: 62 ----KGIVVAVDILDINPLND----KRFHFIKGDIRDENTLSEITKYASSFDIVISDIAP 113
Query: 147 NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKI 206
N TG + +DH L V+ F + K L K++DG R L + + + +KI
Sbjct: 114 NTTGQKFVDHQNSINLIKTVMNFIMKTLKKNGIFLFKLFDGEERESLVKDLKELFEDIKI 173
Query: 207 LKPPSSRSHSAELFLLGRGFK 227
++P ++R +S E++++ +G+K
Sbjct: 174 IRPDATRKNSFEIYIICKGYK 194
>gi|407692404|ref|YP_006817193.1| 23S rRNA methyltransferase J [Actinobacillus suis H91-0380]
gi|407388461|gb|AFU18954.1| 23S rRNA methyltransferase J [Actinobacillus suis H91-0380]
Length = 208
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 117/216 (54%), Gaps = 15/216 (6%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL F D +VQKA K+ R R+ FKL EI + +PG+ V+D GAAPG W
Sbjct: 5 RSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQTDRLFKPGMTVVDLGAAPGGW 64
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ AV + S KG +++ D L + PI G L + DF + + + L+ + DD
Sbjct: 65 SQYAVTQIGS--------KGRIIACDILDMNPIVGVDFL-QGDFREESVLNALLERVGDD 115
Query: 136 KLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
+DVV+SDMAPN +GM +D + +LA+ + R + P ++K++ G
Sbjct: 116 MVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLA---PKGSFVVKVFQGEGFDD 172
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I +S VK+ KP +SR S E++++ G+KG
Sbjct: 173 YLRDIRAMFSTVKVRKPEASRDRSREVYIVATGYKG 208
>gi|262274890|ref|ZP_06052701.1| 23S rRNA methylase [Grimontia hollisae CIP 101886]
gi|262221453|gb|EEY72767.1| 23S rRNA methylase [Grimontia hollisae CIP 101886]
Length = 209
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 116/208 (55%), Gaps = 15/208 (7%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WLK F D YVQ+A+K+ +R R+ FKL EI K K L+PG+ V+D GAAPG WSQ A +
Sbjct: 13 WLKEHFDDKYVQEAQKKGFRSRAIFKLEEIQGKDKLLKPGMTVVDLGAAPGGWSQYAAEQ 72
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
V G V++ D LP+ + G L + DF + + + L+ ++ D +DVV+S
Sbjct: 73 VGDSGQ--------VIACDILPMDSLPGVAFL-QGDFREEAVLNALLDRIQPDMVDVVMS 123
Query: 143 DMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR 199
DMAPN +G D + +LA+ + R + P ++K++ G Q + +
Sbjct: 124 DMAPNMSGNLVSDQARAMYLVELALDMCREVLA---PNGSFIVKVFQGEGFDQYLAEVRK 180
Query: 200 FYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ VKI KP SSR+ S E++++ G+K
Sbjct: 181 MFKAVKIRKPDSSRARSREVYIVATGYK 208
>gi|387772543|ref|ZP_10128462.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
parahaemolyticus HK385]
gi|386906264|gb|EIJ71002.1| ribosomal RNA large subunit methyltransferase J [Haemophilus
parahaemolyticus HK385]
Length = 208
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 117/216 (54%), Gaps = 15/216 (6%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL F D +VQKA K+ R R+ FKL EI + +PG+ V+D GAAPG W
Sbjct: 5 RSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQKTDRLFKPGMTVVDLGAAPGGW 64
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ AV + KG +++ D L + PI G L + DF + + + L+ + DD
Sbjct: 65 SQYAVTQIGE--------KGRIIACDILDMNPIVGVDFL-QGDFREESVLNALLERVGDD 115
Query: 136 KLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
+DVV+SDMAPN +GM +D + +LA+ + R + P ++K++ G +
Sbjct: 116 MVDVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLA---PKGSFVVKVFQGEGFDE 172
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I +S VK+ KP +SR S E++++ G+KG
Sbjct: 173 YLREIRAMFSTVKVRKPEASRDRSREVYIVATGYKG 208
>gi|296108439|ref|YP_003620140.1| cell division protein methyltransferase FtsJ [Legionella
pneumophila 2300/99 Alcoy]
gi|295650341|gb|ADG26188.1| cell division protein methyltransferase FtsJ [Legionella
pneumophila 2300/99 Alcoy]
Length = 206
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 114/211 (54%), Gaps = 9/211 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F D YV+KA+ E YR R+ +KL EID K ++PG+ V+D GAAPG W
Sbjct: 3 RTKSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+Q A + + G ++++D LP+ + V DF + ++ L+ ++
Sbjct: 63 TQYASEKMKGSGR--------LVALDILPMDALPN-VEFILGDFREDNVLQELINLIPQR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD++LSDMAPN +G +D L FA KPG + L+KI+ G +L +
Sbjct: 114 TLDLLLSDMAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+ +V I KP +SRS S E +LL +G+
Sbjct: 174 QARASFEKVVIRKPSASRSRSKETYLLAKGY 204
>gi|388455130|ref|ZP_10137425.1| 23S rRNA methyltransferase J [Fluoribacter dumoffii Tex-KL]
Length = 206
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 116/209 (55%), Gaps = 11/209 (5%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+ F D YV+KA+ E YR R+ +KL E+D K L+PG+ V+D GAAPG W+Q
Sbjct: 6 SSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEVDEKESLLKPGMTVVDLGAAPGGWTQY 65
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-DGAVVLSKCDFTQPDIQDRLVTILKDDKL 137
+ + Q +G ++++D LP+ + D +L DF + ++ +LV I+ + +
Sbjct: 66 VSERL--------QGRGHIIALDILPMDSLPDVDFILG--DFREDEVLRKLVDIIPERGV 115
Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
D++LSDMAPN +G +D L FA +PG LIKI+ G L +
Sbjct: 116 DLLLSDMAPNMSGTTAIDIPRAMYLVELAFDFAAKMLRPGGSMLIKIFHGAGFDDLVKQA 175
Query: 198 TRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+ +V I KP +SR+ S E +LL +G+
Sbjct: 176 RTSFEKVVIRKPSASRARSKETYLLAKGY 204
>gi|399576109|ref|ZP_10769866.1| ribosomal RNA large subunit methyltransferase J [Halogranum
salarium B-1]
gi|399238820|gb|EJN59747.1| ribosomal RNA large subunit methyltransferase J [Halogranum
salarium B-1]
Length = 258
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D Y +AK++ YR RSA+KL +++ L PG +D GAAPG W QVA + V HG
Sbjct: 5 DEYYNRAKQQGYRARSAYKLKQLNESSSLLSPGDVAVDLGAAPGGWLQVASEEVGEHGK- 63
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLS-KCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNA 148
V+ VD I ++ V + + D T+ D +++L + DD DVVLSDMAPN
Sbjct: 64 -------VIGVDLQRIKELEARNVTTIRGDMTEEDTKEQLFDAIGDDGADVVLSDMAPNM 116
Query: 149 TGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILK 208
TG +DH LA A+ G D ++K++DG + P L + + + V+
Sbjct: 117 TGEYNLDHARSVYLARQAFEVALELLDSGGDLVVKVFDGPDLPDLRSDMEKEFQYVRATH 176
Query: 209 PPSSRSHSAELFLLGR 224
P +SR S+EL+L+G+
Sbjct: 177 PDASRQESSELYLIGK 192
>gi|389871629|ref|YP_006379048.1| ribosomal RNA large subunit methyltransferase j [Advenella
kashmirensis WT001]
gi|388536878|gb|AFK62066.1| ribosomal RNA large subunit methyltransferase j [Advenella
kashmirensis WT001]
Length = 217
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA-VK 81
W+ + DPYV+ AK++ YR R+AFKL+EI K +R G ++D G+ PGSWSQVA +
Sbjct: 10 WIHQHINDPYVKMAKQQGYRARAAFKLIEILDSEKLMRKGDIIVDLGSTPGSWSQVARER 69
Query: 82 LVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDK----- 136
LV G +G V+++D LP+ PI G +F Q D +D V +DK
Sbjct: 70 LVGEGGV----LQGRVIALDLLPMEPIAG------VEFIQGDFRDDAVLAALNDKVGQQQ 119
Query: 137 LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES 196
+++V+SDMAPN +G+ D I + + F++ + P ++K + G Q+ +
Sbjct: 120 VNLVMSDMAPNLSGVSSADSARIQHVCELAMAFSLQHLTPDGVLIVKAFHGSGFSQIVQM 179
Query: 197 ITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + +V KP +SR S+E FLLGRG K
Sbjct: 180 FKQHFKRVVERKPKASRDKSSETFLLGRGLK 210
>gi|332535916|ref|ZP_08411626.1| ribosomal RNA large subunit methyltransferase J [Pseudoalteromonas
haloplanktis ANT/505]
gi|332034703|gb|EGI71252.1| ribosomal RNA large subunit methyltransferase J [Pseudoalteromonas
haloplanktis ANT/505]
Length = 209
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 115/214 (53%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F D YVQ+A+K+ +R R+ FKL E+ ++ K LRPG+ V+D GAAPG
Sbjct: 4 KKQSASSQRWLKEHFDDKYVQEAQKKGWRSRAVFKLDEVQNRDKLLRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SWSQ + V KG V++ D LP+ + G L + DF + + + L+ +
Sbjct: 64 SWSQYLAEKVGD--------KGQVIACDILPMDSLAGVDFL-QGDFREEAVLNALLKRID 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+DVVLSDMAPN +G +D L + K ++K++ G Q
Sbjct: 115 GKNVDVVLSDMAPNMSGNNSVDQAGSMYLVELALDMCSQVLKKNGAFIVKVFQGEGFDQY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + VKI KP +SR+ S E++++ G+K
Sbjct: 175 LQDVRNSFKAVKIRKPDASRARSREVYIVATGYK 208
>gi|253686966|ref|YP_003016156.1| ribosomal RNA large subunit methyltransferase J [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|403057030|ref|YP_006645247.1| ribosomal RNA large subunit methyltransferase J [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|259494567|sp|C6DKI3.1|RLME_PECCP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|251753544|gb|ACT11620.1| ribosomal RNA large subunit methyltransferase J [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|402804356|gb|AFR01994.1| ribosomal RNA large subunit methyltransferase J [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 209
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV--TI 131
WSQ V + +G +++ D LP+ PI G DF Q D +D LV +
Sbjct: 64 GWSQYVVTQIGGNGR--------IIACDILPMDPIVG------VDFLQGDFRDELVLKAL 109
Query: 132 LK---DDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG L+K++
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPKSMYLVELALGMCRDVLA---PGGSFLVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VKI KP +SR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTKVKIRKPDASRARSREVYIVATGRK 208
>gi|397668467|ref|YP_006510004.1| 23S rRNA methyltransferase [Legionella pneumophila subsp.
pneumophila]
gi|189040698|sp|A5IHX0.2|RLME_LEGPC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|395131878|emb|CCD10171.1| 23S rRNA methyltransferase [Legionella pneumophila subsp.
pneumophila]
Length = 206
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 114/211 (54%), Gaps = 9/211 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F D YV+KA+ E YR R+ +KL EID K ++PG+ V+D GAAPG W
Sbjct: 3 RTKSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+Q A + + G ++++D LP+ + V DF + ++ L+ ++
Sbjct: 63 TQYASEKMKGSGR--------LVALDILPMDALPN-VEFILGDFREDNVLQELINLIPQR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD++LSDMAPN +G +D L FA KPG + L+KI+ G +L +
Sbjct: 114 TLDLLLSDMAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+ +V I KP +SRS S E +LL +G+
Sbjct: 174 QARASFEKVVIRKPSASRSRSKETYLLAKGY 204
>gi|56415226|ref|YP_152301.1| 23S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197364156|ref|YP_002143793.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|81361508|sp|Q5PLC1.1|RLME_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705312|sp|B5BGK3.1|RLME_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|56129483|gb|AAV78989.1| cell division protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197095633|emb|CAR61201.1| cell division protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 208
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT--- 130
WSQ V + KG +++ D LP+ PI G DF Q D +D LV
Sbjct: 64 GWSQYVVTQIGG--------KGRIIACDLLPMDPIVG------VDFLQGDFRDELVMKAL 109
Query: 131 --ILKDDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA---PGGSFVVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VKI KP SSR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTKVKIRKPDSSRARSREVYIVATGRK 208
>gi|254780313|ref|YP_003064726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039990|gb|ACT56786.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Liberibacter
asiaticus str. psy62]
Length = 227
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 120/209 (57%), Gaps = 7/209 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL R DPYVQ+A+ E +R RSA+KLL+I+ K + L+ +++D G++PGSWSQV
Sbjct: 25 SSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQV 84
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++ S+ +++ V+++D L + PI G V K DF D + + + + D
Sbjct: 85 AARITGSNANNTR-----VVAIDILDMEPILG-VKFFKFDFLDLDSWEFIRQAIGGNP-D 137
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA G R++DH L A FA+ G D L+K + G + +
Sbjct: 138 LVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLK 197
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + +V +KP +SR+ S E+FLL +GF+
Sbjct: 198 KHFQKVIHVKPVASRAESVEMFLLAKGFR 226
>gi|54307808|ref|YP_128828.1| 23S rRNA methyltransferase [Photobacterium profundum SS9]
gi|81400134|sp|Q6LUJ9.1|RLME_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|46912231|emb|CAG19026.1| 23S rRNA methylase [Photobacterium profundum SS9]
Length = 209
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 107/209 (51%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WLK F D YVQ+A+K YR R+ FK+ EI K K L+PG+ V+D GAAPG WSQ
Sbjct: 9 SSGRWLKEHFDDKYVQEAQKRGYRSRAIFKIEEIQKKDKLLKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + +LS+D LP V + DF + + L+ ++ D +D
Sbjct: 69 AAEVVGDEG---QVIACDILSMDSLP------GVSFLQGDFREEAVLSALLERIQPDMVD 119
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMAPN +G D L + P +K++ G Q I
Sbjct: 120 VVLSDMAPNMSGNLASDQPRAMYLVELALEMCKQVLAPNGSFAVKVFQGEGFDQYLAEIR 179
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ VKI KP SSR S E++++ G+K
Sbjct: 180 NMFKVVKIRKPDSSRDRSREVYIVATGYK 208
>gi|54298779|ref|YP_125148.1| ribosomal RNA large subunit methyltransferase (cell division
protein FtsJ) [Legionella pneumophila str. Paris]
gi|81369695|sp|Q5X1A0.1|RLME_LEGPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83305660|sp|Q5ZRT1.2|RLME_LEGPH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|53752564|emb|CAH13996.1| Ribosomal RNA large subunit methyltransferase (Cell division
protein FtsJ) [Legionella pneumophila str. Paris]
Length = 206
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 114/211 (54%), Gaps = 9/211 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F D YV+KA+ E YR R+ +KL EID K ++PG+ V+D GAAPG W
Sbjct: 3 RTKSSKRWLQEHFDDVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+Q A + + G ++++D LP+ + V DF + ++ L+ ++
Sbjct: 63 TQYASEKMRGSGR--------LVALDILPMDALPN-VEFILGDFREDNVLQELINLIPQR 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
LD++LSDMAPN +G +D L FA KPG + L+KI+ G +L +
Sbjct: 114 TLDLLLSDMAPNMSGSSAIDIPRAMYLVELAFDFAEKMLKPGGNMLVKIFHGSGFDELVK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+ +V I KP +SRS S E +LL +G+
Sbjct: 174 QARASFEKVVIRKPSASRSRSKETYLLAKGY 204
>gi|58698158|ref|ZP_00373080.1| FtsJ-like methyltransferase [Wolbachia endosymbiont of Drosophila
ananassae]
gi|58535308|gb|EAL59385.1| FtsJ-like methyltransferase [Wolbachia endosymbiont of Drosophila
ananassae]
Length = 187
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 107/199 (53%), Gaps = 20/199 (10%)
Query: 33 VQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQ 92
+QK K+ YR RSA+KL+E+D+K K + G K++D GA+PG W QVA Q
Sbjct: 1 MQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWLQVA-----------SQ 49
Query: 93 PKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI---LKDDKLDVVLSDMAPNAT 149
V+++D P+ I+G +F Q DI + + KD K DV+LSDMAP +
Sbjct: 50 KGANVVALDVKPMNAINGV------EFIQCDIINEFEILREKFKDQKFDVILSDMAPESC 103
Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
G++ +DH I L A + FA + G ++KI+ G + + + + VK KP
Sbjct: 104 GLKSLDHIRIMLLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKP 163
Query: 210 PSSRSHSAELFLLGRGFKG 228
SSRS S E++L+ GF G
Sbjct: 164 KSSRSESTEMYLVSLGFIG 182
>gi|260869930|ref|YP_003236332.1| 23S rRNA methyltransferase [Escherichia coli O111:H- str. 11128]
gi|415820520|ref|ZP_11509627.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
OK1180]
gi|417197509|ref|ZP_12016443.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
4.0522]
gi|417210855|ref|ZP_12021272.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
JB1-95]
gi|417593582|ref|ZP_12244273.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
2534-86]
gi|419198885|ref|ZP_13742180.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC8A]
gi|419203515|ref|ZP_13746713.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC8B]
gi|419223329|ref|ZP_13766243.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC8E]
gi|419890836|ref|ZP_14411033.1| 23S rRNA methyltransferase J [Escherichia coli O111:H8 str.
CVM9570]
gi|419898492|ref|ZP_14418041.1| 23S rRNA methyltransferase J [Escherichia coli O111:H8 str.
CVM9574]
gi|420087923|ref|ZP_14599849.1| 23S rRNA methyltransferase J [Escherichia coli O111:H8 str.
CVM9602]
gi|420098716|ref|ZP_14609975.1| 23S rRNA methyltransferase J [Escherichia coli O111:H8 str.
CVM9634]
gi|422803957|ref|ZP_16852389.1| ribosomal RNA large subunit methyltransferase J [Escherichia
fergusonii B253]
gi|424767512|ref|ZP_18194829.1| 23S rRNA methyltransferase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|424817740|ref|ZP_18242891.1| 23S rRNA methyltransferase J [Escherichia fergusonii ECD227]
gi|432467498|ref|ZP_19709577.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE205]
gi|432581622|ref|ZP_19818036.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE57]
gi|433074437|ref|ZP_20261079.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE129]
gi|433121749|ref|ZP_20307410.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE157]
gi|433184900|ref|ZP_20369138.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE85]
gi|257766286|dbj|BAI37781.1| 23S rRNA methyltransferase [Escherichia coli O111:H- str. 11128]
gi|323178645|gb|EFZ64221.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
OK1180]
gi|324115217|gb|EGC09181.1| ribosomal RNA large subunit methyltransferase J [Escherichia
fergusonii B253]
gi|325498760|gb|EGC96619.1| 23S rRNA methyltransferase J [Escherichia fergusonii ECD227]
gi|345333903|gb|EGW66349.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
2534-86]
gi|378044486|gb|EHW06903.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC8A]
gi|378051128|gb|EHW13447.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC8B]
gi|378063523|gb|EHW25692.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC8E]
gi|386188814|gb|EIH77603.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
4.0522]
gi|386195459|gb|EIH89694.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
JB1-95]
gi|388352617|gb|EIL17727.1| 23S rRNA methyltransferase J [Escherichia coli O111:H8 str.
CVM9570]
gi|388353491|gb|EIL18497.1| 23S rRNA methyltransferase J [Escherichia coli O111:H8 str.
CVM9574]
gi|394380725|gb|EJE58466.1| 23S rRNA methyltransferase J [Escherichia coli O111:H8 str.
CVM9634]
gi|394391366|gb|EJE68238.1| 23S rRNA methyltransferase J [Escherichia coli O111:H8 str.
CVM9602]
gi|421947783|gb|EKU04840.1| 23S rRNA methyltransferase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|430991984|gb|ELD08383.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE205]
gi|431121904|gb|ELE24773.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE57]
gi|431584835|gb|ELI56810.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE129]
gi|431639780|gb|ELJ07629.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE157]
gi|431703512|gb|ELJ68199.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE85]
Length = 209
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT--- 130
WSQ V + KG +++ D LP+ PI G DF Q D +D LV
Sbjct: 64 GWSQYVVNQIGG--------KGRIIACDLLPMDPIVG------VDFLQGDFRDELVMKAL 109
Query: 131 --ILKDDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA---PGGSFVVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VK+ KP SSR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK 208
>gi|359443464|ref|ZP_09233303.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20429]
gi|392534125|ref|ZP_10281262.1| 23S rRNA methyltransferase J [Pseudoalteromonas arctica A 37-1-2]
gi|358034687|dbj|GAA69552.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20429]
Length = 209
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 115/214 (53%), Gaps = 9/214 (4%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WLK F D YVQ+A+K+ +R R+ FKL E+ ++ K LRPG+ V+D GAAPG
Sbjct: 4 KKQSASSQRWLKEHFDDKYVQEAQKKGWRSRAVFKLDEVQNRDKILRPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SWSQ + V KG V++ D LP+ + G L + DF + + + L+ +
Sbjct: 64 SWSQYLAEKVGD--------KGQVIACDILPMDSLAGVDFL-QGDFREEAVLNALLKRID 114
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+DVVLSDMAPN +G +D L + K ++K++ G Q
Sbjct: 115 GKNVDVVLSDMAPNMSGNNSVDQAGSMYLVELALDMCSQVLKKNGAFIVKVFQGEGFDQY 174
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + VKI KP +SR+ S E++++ G+K
Sbjct: 175 LQDVRNSFKAVKIRKPDASRARSREVYIVATGYK 208
>gi|365921259|ref|ZP_09445547.1| ribosomal RNA large subunit methyltransferase J [Cardiobacterium
valvarum F0432]
gi|364576454|gb|EHM53777.1| ribosomal RNA large subunit methyltransferase J [Cardiobacterium
valvarum F0432]
Length = 208
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 112/214 (52%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F D YVQKA++E YR R+ +KL EI K + +RPG+ V++ GAAPG W
Sbjct: 3 RSKTSQRWLKEHFNDIYVQKAQQEGYRSRAVYKLKEIQEKDRLIRPGMTVVELGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ + + +G ++++D LP+ + V + DF + + D L L
Sbjct: 63 SQYVAECLRG--------QGRMIALDILPMDALPD-VTFIQGDFREDAVLDALYAELGGS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R +D L + FA G L KI+ G L
Sbjct: 114 TVDLVISDMAPNTSGVRVVDQAKSMYLVELAVDFAEHRLTQGGSFLTKIFHGPGFDTLLR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
S+ + V KP +SR+ S E +LL RGF K
Sbjct: 174 SLKSRFLTVATRKPEASRARSQETYLLARGFGRK 207
>gi|340000854|ref|YP_004731738.1| cell division protein [Salmonella bongori NCTC 12419]
gi|339514216|emb|CCC31979.1| cell division protein [Salmonella bongori NCTC 12419]
Length = 208
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT--- 130
WSQ V + KG +++ D LP+ PI G DF Q D +D LV
Sbjct: 64 GWSQYVVSQIGG--------KGRIIACDLLPMDPIVG------VDFLQGDFRDELVMKAL 109
Query: 131 --ILKDDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA---PGGSFVVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VK+ KP SSR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK 208
>gi|381395089|ref|ZP_09920795.1| ribosomal RNA large subunit methyltransferase E [Glaciecola punicea
DSM 14233 = ACAM 611]
gi|379329188|dbj|GAB55928.1| ribosomal RNA large subunit methyltransferase E [Glaciecola punicea
DSM 14233 = ACAM 611]
Length = 206
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 119/215 (55%), Gaps = 15/215 (6%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WL DPYV+KAK + YR R+++KL+E++ K K RPG V+D G+APG W
Sbjct: 3 RSKTSKKWLDEHVNDPYVKKAKADGYRSRASYKLIELNEKDKLFRPGNIVMDLGSAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQ+ LV +G V++ D L + I G V + DFT + ++++ L
Sbjct: 63 SQIVAPLVGE--------RGGVIASDILHMDSIIG-VTFIQGDFTDEAVYAQILSTLNGQ 113
Query: 136 KLDVVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
K DVV+SDM+PN +G+ D + +LA+ + R +T PG K++ G +
Sbjct: 114 KADVVMSDMSPNLSGVATTDQYSSIYLVELALDMARNVLT---PGGSFCAKVFQGVGYEE 170
Query: 193 LEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ + + +V + KP +SR S E++++G+GFK
Sbjct: 171 YVKDVRTSFDKVVVRKPAASRPRSREVYIVGKGFK 205
>gi|227113766|ref|ZP_03827422.1| 23S rRNA methyltransferase J [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227328603|ref|ZP_03832627.1| 23S rRNA methyltransferase J [Pectobacterium carotovorum subsp.
carotovorum WPP14]
gi|261820120|ref|YP_003258226.1| 23S rRNA methyltransferase J [Pectobacterium wasabiae WPP163]
gi|421081046|ref|ZP_15541960.1| Ribosomal RNA large subunit methyltransferase [Pectobacterium
wasabiae CFBP 3304]
gi|261604133|gb|ACX86619.1| ribosomal RNA large subunit methyltransferase J [Pectobacterium
wasabiae WPP163]
gi|385870305|gb|AFI88825.1| Ribosomal RNA large subunit methyltransferase E [Pectobacterium sp.
SCC3193]
gi|401704056|gb|EJS94265.1| Ribosomal RNA large subunit methyltransferase [Pectobacterium
wasabiae CFBP 3304]
Length = 209
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLV--TI 131
WSQ V + +G +++ D LP+ PI G DF Q D +D LV +
Sbjct: 64 GWSQYVVTQIGGNGR--------IIACDILPMDPIVG------VDFLQGDFRDELVLKAL 109
Query: 132 LK---DDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
L+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG L+K++
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPKSMYLVELALGMCRDVLA---PGGSFLVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VKI KP +SR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTKVKIRKPDASRARSREVYIVATGRK 208
>gi|170765486|ref|ZP_02900297.1| ribosomal RNA large subunit methyltransferase J [Escherichia
albertii TW07627]
gi|170124632|gb|EDS93563.1| ribosomal RNA large subunit methyltransferase J [Escherichia
albertii TW07627]
Length = 209
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI-- 131
WSQ V + KG +++ D LP+ PI G DF Q D +D LV
Sbjct: 64 GWSQYVVSQIGG--------KGRIIACDLLPMDPIVG------VDFLQGDFRDELVMQAL 109
Query: 132 ---LKDDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA---PGGSFVVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VK+ KP SSR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK 208
>gi|283788183|ref|YP_003368048.1| cell division protein [Citrobacter rodentium ICC168]
gi|282951637|emb|CBG91337.1| cell division protein [Citrobacter rodentium ICC168]
Length = 209
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT--- 130
WSQ V + KG +++ D LP+ PI G DF Q D +D LV
Sbjct: 64 GWSQYVVSQIGG--------KGRIIACDLLPMDPIVG------VDFLQGDFRDELVMKAL 109
Query: 131 --ILKDDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA---PGGSFVVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VK+ KP SSR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK 208
>gi|16766593|ref|NP_462208.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|161616304|ref|YP_001590269.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167552057|ref|ZP_02345810.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167995303|ref|ZP_02576393.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168231905|ref|ZP_02656963.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168237996|ref|ZP_02663054.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168243130|ref|ZP_02668062.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168262693|ref|ZP_02684666.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168463481|ref|ZP_02697398.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168819637|ref|ZP_02831637.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194443123|ref|YP_002042553.1| 23S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194450102|ref|YP_002047325.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194471555|ref|ZP_03077539.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194736185|ref|YP_002116245.1| 23S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197247415|ref|YP_002148221.1| 23S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197265976|ref|ZP_03166050.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|198244059|ref|YP_002217269.1| 23S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200387675|ref|ZP_03214287.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205354198|ref|YP_002227999.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858545|ref|YP_002245196.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|374979320|ref|ZP_09720659.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E ; LSU rRNA Um [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|375003159|ref|ZP_09727499.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Infantis str. SARB27]
gi|375120780|ref|ZP_09765947.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|375125069|ref|ZP_09770233.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|378446683|ref|YP_005234315.1| cell division protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378452115|ref|YP_005239475.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378701197|ref|YP_005183155.1| cell division protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378956909|ref|YP_005214396.1| cell division protein [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|378985892|ref|YP_005249048.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378990607|ref|YP_005253771.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379702557|ref|YP_005244285.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383497951|ref|YP_005398640.1| cell division protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|386592981|ref|YP_006089381.1| Cell division protein FtsJ / Ribosomal RNA largesubunit
methyltransferase E [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|409247007|ref|YP_006887709.1| cell division protein [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|416423870|ref|ZP_11691204.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416433535|ref|ZP_11696995.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416440936|ref|ZP_11701246.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416447938|ref|ZP_11706142.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416454504|ref|ZP_11710354.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416460976|ref|ZP_11715084.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416462713|ref|ZP_11715635.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416475236|ref|ZP_11720529.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416492604|ref|ZP_11727533.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416498669|ref|ZP_11730425.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416505817|ref|ZP_11734163.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416516099|ref|ZP_11738977.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416526937|ref|ZP_11742775.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416534130|ref|ZP_11746948.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416546592|ref|ZP_11753986.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416553492|ref|ZP_11757743.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|416557649|ref|ZP_11759675.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416568325|ref|ZP_11764677.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416577471|ref|ZP_11769807.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416586117|ref|ZP_11775362.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416589291|ref|ZP_11776943.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416600932|ref|ZP_11784695.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416605406|ref|ZP_11786894.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416614887|ref|ZP_11793087.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618514|ref|ZP_11794609.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416629751|ref|ZP_11800314.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416638424|ref|ZP_11803895.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416646717|ref|ZP_11807924.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416659214|ref|ZP_11814692.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416670520|ref|ZP_11820158.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416678877|ref|ZP_11822808.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416699897|ref|ZP_11828911.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416706506|ref|ZP_11831718.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416714056|ref|ZP_11837507.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416718701|ref|ZP_11840809.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416725808|ref|ZP_11846031.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416732933|ref|ZP_11850024.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416736445|ref|ZP_11852072.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416750638|ref|ZP_11859808.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416754925|ref|ZP_11861717.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416765649|ref|ZP_11868954.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416771456|ref|ZP_11872721.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417329016|ref|ZP_12113984.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|417343989|ref|ZP_12124443.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|417352462|ref|ZP_12129675.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417360931|ref|ZP_12134942.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|417368229|ref|ZP_12139854.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|417376093|ref|ZP_12145380.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|417386032|ref|ZP_12150843.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|417393774|ref|ZP_12156179.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|417469992|ref|ZP_12166254.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|417483824|ref|ZP_12172206.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|417513823|ref|ZP_12177785.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|417520818|ref|ZP_12182654.1| Cell division protein ftsJ / Ribosomal RNA large subunit
methyltransferase E [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|417534184|ref|ZP_12188020.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|417542003|ref|ZP_12193577.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|418482437|ref|ZP_13051453.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418488883|ref|ZP_13056277.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418494329|ref|ZP_13060783.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418500496|ref|ZP_13066892.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418505793|ref|ZP_13072139.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418507265|ref|ZP_13073589.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418511416|ref|ZP_13077676.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|418524393|ref|ZP_13090378.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|418759816|ref|ZP_13315993.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418765943|ref|ZP_13322022.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418771269|ref|ZP_13327276.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418774006|ref|ZP_13329979.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418778049|ref|ZP_13333963.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418786347|ref|ZP_13342163.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418788867|ref|ZP_13344659.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418794400|ref|ZP_13350121.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418797600|ref|ZP_13353286.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|418802016|ref|ZP_13357648.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|418806502|ref|ZP_13362074.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418810662|ref|ZP_13366202.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418818278|ref|ZP_13373757.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418823346|ref|ZP_13378755.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418824405|ref|ZP_13379767.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418831240|ref|ZP_13386198.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418837474|ref|ZP_13392348.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418842288|ref|ZP_13397098.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418847016|ref|ZP_13401781.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418851446|ref|ZP_13406158.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418855919|ref|ZP_13410567.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418857683|ref|ZP_13412308.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418862842|ref|ZP_13417381.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418869494|ref|ZP_13423927.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|419729808|ref|ZP_14256764.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419732847|ref|ZP_14259751.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419741334|ref|ZP_14268035.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419742934|ref|ZP_14269603.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419748992|ref|ZP_14275482.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|419786770|ref|ZP_14312485.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419793146|ref|ZP_14318769.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|421360877|ref|ZP_15811153.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421361129|ref|ZP_15811395.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421369974|ref|ZP_15820149.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421374418|ref|ZP_15824549.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421378645|ref|ZP_15828724.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421379667|ref|ZP_15829734.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421384668|ref|ZP_15834691.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421389690|ref|ZP_15839673.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421396976|ref|ZP_15846901.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421397834|ref|ZP_15847744.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421405757|ref|ZP_15855582.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421408717|ref|ZP_15858516.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421411320|ref|ZP_15861086.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421417745|ref|ZP_15867455.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421421209|ref|ZP_15870878.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421427440|ref|ZP_15877060.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421431211|ref|ZP_15880797.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421437269|ref|ZP_15886790.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421441503|ref|ZP_15890972.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421442842|ref|ZP_15892287.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421447655|ref|ZP_15897052.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421570379|ref|ZP_16016070.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421574271|ref|ZP_16019896.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421579346|ref|ZP_16024910.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421582645|ref|ZP_16028178.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|421887014|ref|ZP_16318178.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|422027518|ref|ZP_16373858.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422032560|ref|ZP_16378667.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|423141822|ref|ZP_17129460.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. houtenae str. ATCC BAA-1581]
gi|427554326|ref|ZP_18929159.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427576574|ref|ZP_18935105.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427592728|ref|ZP_18938674.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427623549|ref|ZP_18945049.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427640423|ref|ZP_18948440.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427657542|ref|ZP_18953188.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427659344|ref|ZP_18954911.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427677274|ref|ZP_18962966.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427800592|ref|ZP_18968325.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|436619458|ref|ZP_20514537.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436649013|ref|ZP_20516682.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436801068|ref|ZP_20524685.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436807198|ref|ZP_20527241.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436818089|ref|ZP_20534722.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436832312|ref|ZP_20536602.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436848128|ref|ZP_20539945.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436860871|ref|ZP_20548055.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436867901|ref|ZP_20553055.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436869597|ref|ZP_20553738.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436877259|ref|ZP_20558384.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436891871|ref|ZP_20566571.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436899223|ref|ZP_20570634.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436902734|ref|ZP_20573198.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436915183|ref|ZP_20580030.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436919882|ref|ZP_20582663.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436925856|ref|ZP_20586209.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436932016|ref|ZP_20589365.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436946226|ref|ZP_20598054.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436955689|ref|ZP_20602564.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436966421|ref|ZP_20607090.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436970358|ref|ZP_20608888.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436979830|ref|ZP_20612975.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436993761|ref|ZP_20618554.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437009371|ref|ZP_20623748.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437022512|ref|ZP_20628461.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437028619|ref|ZP_20630711.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437042734|ref|ZP_20636247.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437050409|ref|ZP_20640554.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437061641|ref|ZP_20647007.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437066557|ref|ZP_20649619.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437072671|ref|ZP_20652588.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437083302|ref|ZP_20659045.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437098044|ref|ZP_20665499.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437102369|ref|ZP_20666503.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437118085|ref|ZP_20670148.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437129787|ref|ZP_20676263.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437141502|ref|ZP_20683186.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437146416|ref|ZP_20686205.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437153602|ref|ZP_20690708.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437158239|ref|ZP_20693161.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437169057|ref|ZP_20699450.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437178557|ref|ZP_20704727.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437181438|ref|ZP_20706552.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437250482|ref|ZP_20715231.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437260145|ref|ZP_20717545.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437272284|ref|ZP_20724170.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437281467|ref|ZP_20728601.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437296749|ref|ZP_20732550.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437316123|ref|ZP_20737811.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437326499|ref|ZP_20740261.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437342024|ref|ZP_20745147.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437365385|ref|ZP_20748723.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437417782|ref|ZP_20754201.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437453437|ref|ZP_20759791.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437463628|ref|ZP_20763310.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437480809|ref|ZP_20768514.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437495469|ref|ZP_20772745.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437504803|ref|ZP_20775285.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437538193|ref|ZP_20781892.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437567351|ref|ZP_20787622.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437580747|ref|ZP_20792150.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437588092|ref|ZP_20793732.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437604829|ref|ZP_20799008.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437619603|ref|ZP_20803755.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437633828|ref|ZP_20806798.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437665632|ref|ZP_20814783.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437675641|ref|ZP_20816794.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437700187|ref|ZP_20823774.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437715677|ref|ZP_20828024.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437732958|ref|ZP_20831961.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437748545|ref|ZP_20833717.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437804353|ref|ZP_20838907.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437823866|ref|ZP_20843667.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|437862453|ref|ZP_20847951.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|438032375|ref|ZP_20855355.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|438084943|ref|ZP_20858514.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438100194|ref|ZP_20863835.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438114798|ref|ZP_20870304.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438129353|ref|ZP_20873346.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|440763659|ref|ZP_20942696.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440770563|ref|ZP_20949512.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440775092|ref|ZP_20953977.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|445128652|ref|ZP_21380362.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|445141151|ref|ZP_21385264.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445149554|ref|ZP_21389240.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445171351|ref|ZP_21396101.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445179547|ref|ZP_21397984.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445226199|ref|ZP_21403794.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445247779|ref|ZP_21408497.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|445329571|ref|ZP_21413524.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445344949|ref|ZP_21417914.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445356918|ref|ZP_21421936.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|452122886|ref|YP_007473134.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|81521544|sp|Q8ZLS7.1|RLME_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040331|sp|A9N744.1|RLME_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705306|sp|B5F6U7.1|RLME_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705307|sp|B5FI23.1|RLME_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705308|sp|B5R0H0.1|RLME_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705309|sp|B5REP5.1|RLME_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705310|sp|B4TJ16.1|RLME_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705311|sp|B4T708.1|RLME_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705313|sp|B4TWE7.1|RLME_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|16421855|gb|AAL22167.1| 23S rRNA methyltransferase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|161365668|gb|ABX69436.1| hypothetical protein SPAB_04112 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401786|gb|ACF62008.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194408406|gb|ACF68625.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194457919|gb|EDX46758.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194711687|gb|ACF90908.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195633188|gb|EDX51602.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197211118|gb|ACH48515.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197244231|gb|EDY26851.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197289104|gb|EDY28473.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197938575|gb|ACH75908.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199604773|gb|EDZ03318.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|205273979|emb|CAR38985.1| cell division protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205323210|gb|EDZ11049.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205327001|gb|EDZ13765.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205333841|gb|EDZ20605.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205337840|gb|EDZ24604.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205343455|gb|EDZ30219.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205348567|gb|EDZ35198.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|206710348|emb|CAR34706.1| cell division protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|261248462|emb|CBG26299.1| cell division protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267995494|gb|ACY90379.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301159846|emb|CBW19365.1| cell division protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312914321|dbj|BAJ38295.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320087741|emb|CBY97505.1| cell division protein [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|321225980|gb|EFX51034.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E ; LSU rRNA Um [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322615300|gb|EFY12221.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618341|gb|EFY15232.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622854|gb|EFY19698.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626824|gb|EFY23621.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631393|gb|EFY28153.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635340|gb|EFY32054.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643339|gb|EFY39903.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322647089|gb|EFY43590.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648892|gb|EFY45337.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655084|gb|EFY51395.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322657687|gb|EFY53955.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664183|gb|EFY60381.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322667466|gb|EFY63628.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674714|gb|EFY70806.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675653|gb|EFY71726.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682289|gb|EFY78312.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684892|gb|EFY80890.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323131656|gb|ADX19086.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|323195903|gb|EFZ81074.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323199020|gb|EFZ84117.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204280|gb|EFZ89289.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323211320|gb|EFZ96164.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323214738|gb|EFZ99487.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221218|gb|EGA05644.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224041|gb|EGA08334.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230310|gb|EGA14429.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233286|gb|EGA17380.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323239323|gb|EGA23373.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323242426|gb|EGA26452.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323246936|gb|EGA30902.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254131|gb|EGA37951.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255248|gb|EGA39025.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323262711|gb|EGA46267.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264021|gb|EGA47529.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269407|gb|EGA52862.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326625047|gb|EGE31392.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|326629319|gb|EGE35662.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|332990154|gb|AEF09137.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|353077847|gb|EHB43607.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. enterica serovar Infantis str. SARB27]
gi|353566178|gb|EHC31738.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Adelaide str. A4-669]
gi|353566500|gb|EHC31957.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353585413|gb|EHC45255.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353587172|gb|EHC46554.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|353594338|gb|EHC51879.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|353604413|gb|EHC59208.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|353607687|gb|EHC61488.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Minnesota str. A4-603]
gi|353626301|gb|EHC74874.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|353634659|gb|EHC81177.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|353635703|gb|EHC81943.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|353642992|gb|EHC87291.1| Cell division protein ftsJ / Ribosomal RNA large subunit
methyltransferase E [Salmonella enterica subsp. enterica
serovar Uganda str. R8-3404]
gi|353659199|gb|EHC99164.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|353659596|gb|EHC99441.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|357207520|gb|AET55566.1| cell division protein [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|357954733|gb|EHJ80796.1| Cell division protein FtsJ [Salmonella enterica subsp. enterica
serovar Baildon str. R6-199]
gi|363555634|gb|EHL39858.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363556592|gb|EHL40805.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363562812|gb|EHL46901.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|363562928|gb|EHL47015.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363567754|gb|EHL51752.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363577670|gb|EHL61489.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|363578498|gb|EHL62307.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|366062147|gb|EHN26384.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366063468|gb|EHN27686.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366068100|gb|EHN32248.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366068951|gb|EHN33083.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366069264|gb|EHN33389.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366081573|gb|EHN45516.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366084741|gb|EHN48641.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|366830874|gb|EHN57741.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372207252|gb|EHP20751.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|379050994|gb|EHY68886.1| ribosomal RNA large subunit methyltransferase J [Salmonella
enterica subsp. houtenae str. ATCC BAA-1581]
gi|379983391|emb|CCF90451.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|380464772|gb|AFD60175.1| cell division protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|381292012|gb|EIC33222.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381296110|gb|EIC37218.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381302199|gb|EIC43245.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381312743|gb|EIC53537.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381312988|gb|EIC53781.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383800022|gb|AFH47104.1| Cell division protein FtsJ / Ribosomal RNA largesubunit
methyltransferase E [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|392617125|gb|EIW99550.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392620713|gb|EIX03079.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392733797|gb|EIZ90988.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392738661|gb|EIZ95801.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392745457|gb|EJA02490.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392748311|gb|EJA05298.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392753046|gb|EJA09986.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392756513|gb|EJA13409.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392761790|gb|EJA18609.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392761925|gb|EJA18743.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392769039|gb|EJA25785.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392779468|gb|EJA36137.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|392781610|gb|EJA38251.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392783119|gb|EJA39749.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392786240|gb|EJA42797.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392786690|gb|EJA43246.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392798994|gb|EJA55263.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392800436|gb|EJA56674.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392806859|gb|EJA62943.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392809487|gb|EJA65524.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392817593|gb|EJA73503.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392820269|gb|EJA76119.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392822668|gb|EJA78473.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392834239|gb|EJA89849.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392834752|gb|EJA90354.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392835957|gb|EJA91545.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|395981444|gb|EJH90666.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395982097|gb|EJH91318.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395993856|gb|EJI02946.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395994542|gb|EJI03618.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395994980|gb|EJI04045.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396005842|gb|EJI14814.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396009430|gb|EJI18363.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396017249|gb|EJI26115.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396018300|gb|EJI27162.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396021985|gb|EJI30799.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396028132|gb|EJI36894.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396032644|gb|EJI41363.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396042580|gb|EJI51202.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396042851|gb|EJI51471.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396046346|gb|EJI54934.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396050417|gb|EJI58942.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396051795|gb|EJI60310.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396055037|gb|EJI63529.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396063660|gb|EJI72049.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396071899|gb|EJI80215.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396074549|gb|EJI82837.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|402521880|gb|EJW29212.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402524374|gb|EJW31673.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402525772|gb|EJW33058.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402532825|gb|EJW40013.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|414014430|gb|EKS98273.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414015620|gb|EKS99427.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414015831|gb|EKS99622.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414025857|gb|EKT09145.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414027822|gb|EKT11033.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414030320|gb|EKT13425.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414043823|gb|EKT26297.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414044284|gb|EKT26739.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414056827|gb|EKT38611.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414058603|gb|EKT40262.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414063241|gb|EKT44409.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|434941875|gb|ELL48253.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434958447|gb|ELL51999.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434965384|gb|ELL58341.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434968154|gb|ELL60906.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434970633|gb|ELL63194.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434980911|gb|ELL72798.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434985315|gb|ELL77002.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434991004|gb|ELL82532.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434993053|gb|ELL84492.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435002737|gb|ELL93788.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435006000|gb|ELL96920.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435008760|gb|ELL99571.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435012358|gb|ELM03033.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435019164|gb|ELM09608.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435023265|gb|ELM13561.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435029108|gb|ELM19167.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|435029717|gb|ELM19775.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435035798|gb|ELM25643.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435038118|gb|ELM27900.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435044529|gb|ELM34212.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435046065|gb|ELM35691.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435046831|gb|ELM36446.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435058161|gb|ELM47516.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435065438|gb|ELM54544.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435067195|gb|ELM56256.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435068386|gb|ELM57414.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435076449|gb|ELM65232.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435083384|gb|ELM71985.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435084655|gb|ELM73240.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435088125|gb|ELM76582.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435093113|gb|ELM81453.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435097363|gb|ELM85622.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435106688|gb|ELM94705.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435108875|gb|ELM96840.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435110201|gb|ELM98134.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435122994|gb|ELN10498.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435127007|gb|ELN14401.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435127670|gb|ELN15030.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435133662|gb|ELN20820.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435136661|gb|ELN23751.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435141353|gb|ELN28295.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435148785|gb|ELN35499.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435152024|gb|ELN38655.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435152882|gb|ELN39504.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435164182|gb|ELN50281.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435164796|gb|ELN50868.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435166398|gb|ELN52381.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435168995|gb|ELN54805.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435169230|gb|ELN55029.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435179176|gb|ELN64326.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435180599|gb|ELN65707.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435192426|gb|ELN76957.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435193690|gb|ELN78169.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435202417|gb|ELN86271.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435208077|gb|ELN91501.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435208343|gb|ELN91758.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435217985|gb|ELO00392.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435218905|gb|ELO01306.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435226816|gb|ELO08369.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435235091|gb|ELO15944.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435235889|gb|ELO16671.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435239039|gb|ELO19647.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435240998|gb|ELO21388.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435256772|gb|ELO36066.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435258237|gb|ELO37504.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435258883|gb|ELO38143.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435265219|gb|ELO44104.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435274248|gb|ELO52372.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435277454|gb|ELO55403.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435281882|gb|ELO59529.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435284980|gb|ELO62397.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435287355|gb|ELO64558.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435302951|gb|ELO78878.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435306205|gb|ELO81560.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435311984|gb|ELO85999.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435319348|gb|ELO92187.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435325154|gb|ELO97028.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435327246|gb|ELO98991.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|435328622|gb|ELP00088.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435336310|gb|ELP06276.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|436411261|gb|ELP09214.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436411706|gb|ELP09654.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436419291|gb|ELP17169.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|444851360|gb|ELX76451.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444854700|gb|ELX79759.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|444857796|gb|ELX82794.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444861406|gb|ELX86285.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444867861|gb|ELX92535.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444872500|gb|ELX96838.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444878921|gb|ELY03033.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444879615|gb|ELY03710.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444886876|gb|ELY10617.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|444890087|gb|ELY13454.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Enteritidis str. 436]
gi|451911890|gb|AGF83696.1| 23S rRNA methyltransferase J [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 208
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT--- 130
WSQ V + KG +++ D LP+ PI G DF Q D +D LV
Sbjct: 64 GWSQYVVTQIGG--------KGRIIACDLLPMDPIVG------VDFLQGDFRDELVMKAL 109
Query: 131 --ILKDDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA---PGGSFVVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VK+ KP SSR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK 208
>gi|399019569|ref|ZP_10721715.1| 23S rRNA methylase [Herbaspirillum sp. CF444]
gi|398097460|gb|EJL87764.1| 23S rRNA methylase [Herbaspirillum sp. CF444]
Length = 214
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 113/206 (54%), Gaps = 3/206 (1%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
WL DPYV+ A+KE YR R+A+KL EID + K ++PG ++D G+ PGSWSQ A
Sbjct: 10 WLHDHINDPYVKLAQKEGYRARAAYKLKEIDEEEKLIKPGQVIVDLGSTPGSWSQYARNK 69
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
+ G + +G ++ +D LP+ PI V + DF + D +L IL ++D+VLS
Sbjct: 70 LA--GLEGGGIRGTIIGLDMLPMDPI-ADVHFIQGDFREEDSLRQLEAILDGRQVDLVLS 126
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
DMAPN +G+ D + L I FA + KP L+K ++G +L +
Sbjct: 127 DMAPNLSGVAIADAARVEHLIDLAIEFAQAHMKPTGSVLVKCFNGTGYNELVHKFRAEFK 186
Query: 203 QVKILKPPSSRSHSAELFLLGRGFKG 228
V KP +SR S+E+FLLG+ K
Sbjct: 187 TVTSKKPKASRDKSSEIFLLGKVLKN 212
>gi|15803719|ref|NP_289753.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. EDL933]
gi|15833312|ref|NP_312085.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. Sakai]
gi|16131069|ref|NP_417646.1| 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent
[Escherichia coli str. K-12 substr. MG1655]
gi|24114468|ref|NP_708978.1| 23S rRNA methyltransferase [Shigella flexneri 2a str. 301]
gi|26249762|ref|NP_755802.1| 23S rRNA methyltransferase J [Escherichia coli CFT073]
gi|30064517|ref|NP_838688.1| 23S rRNA methyltransferase J [Shigella flexneri 2a str. 2457T]
gi|74313716|ref|YP_312135.1| 23S rRNA methyltransferase [Shigella sonnei Ss046]
gi|82545583|ref|YP_409530.1| 23S rRNA methyltransferase J [Shigella boydii Sb227]
gi|91212600|ref|YP_542586.1| 23S rRNA methyltransferase [Escherichia coli UTI89]
gi|110643419|ref|YP_671149.1| 23S rRNA methyltransferase [Escherichia coli 536]
gi|110807045|ref|YP_690565.1| 23S rRNA methyltransferase [Shigella flexneri 5 str. 8401]
gi|117625473|ref|YP_858796.1| 23S rRNA methyltransferase J [Escherichia coli APEC O1]
gi|157148748|ref|YP_001456067.1| 23S rRNA methyltransferase J [Citrobacter koseri ATCC BAA-895]
gi|157158192|ref|YP_001464654.1| 23S rRNA methyltransferase [Escherichia coli E24377A]
gi|157162662|ref|YP_001459980.1| 23S rRNA methyltransferase J [Escherichia coli HS]
gi|168754160|ref|ZP_02779167.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4401]
gi|168765485|ref|ZP_02790492.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4501]
gi|168781322|ref|ZP_02806329.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4076]
gi|168786064|ref|ZP_02811071.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC869]
gi|170018571|ref|YP_001723525.1| 23S rRNA methyltransferase J [Escherichia coli ATCC 8739]
gi|170082714|ref|YP_001732034.1| 23S rRNA methyltransferase J [Escherichia coli str. K-12 substr.
DH10B]
gi|170681323|ref|YP_001745451.1| 23S rRNA methyltransferase J [Escherichia coli SMS-3-5]
gi|187730342|ref|YP_001881906.1| 23S rRNA methyltransferase J [Shigella boydii CDC 3083-94]
gi|188494253|ref|ZP_03001523.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
53638]
gi|191168046|ref|ZP_03029846.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
B7A]
gi|191172201|ref|ZP_03033744.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
F11]
gi|194430230|ref|ZP_03062728.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
B171]
gi|195938398|ref|ZP_03083780.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. EC4024]
gi|208807870|ref|ZP_03250207.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4206]
gi|208812489|ref|ZP_03253818.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4045]
gi|208820270|ref|ZP_03260590.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4042]
gi|209395973|ref|YP_002272649.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. EC4115]
gi|209920654|ref|YP_002294738.1| 23S rRNA methyltransferase J [Escherichia coli SE11]
gi|215488495|ref|YP_002330926.1| 23S rRNA methyltransferase [Escherichia coli O127:H6 str. E2348/69]
gi|217327701|ref|ZP_03443784.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. TW14588]
gi|218550462|ref|YP_002384253.1| 23S rRNA methyltransferase J [Escherichia fergusonii ATCC 35469]
gi|218555749|ref|YP_002388662.1| 23S rRNA methyltransferase J [Escherichia coli IAI1]
gi|218560249|ref|YP_002393162.1| 23S rRNA methyltransferase J [Escherichia coli S88]
gi|218691469|ref|YP_002399681.1| 23S rRNA methyltransferase J [Escherichia coli ED1a]
gi|218696884|ref|YP_002404551.1| 23S rRNA methyltransferase [Escherichia coli 55989]
gi|218701948|ref|YP_002409577.1| 23S rRNA methyltransferase J [Escherichia coli IAI39]
gi|218706799|ref|YP_002414318.1| 23S rRNA methyltransferase J [Escherichia coli UMN026]
gi|222157891|ref|YP_002558030.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
LF82]
gi|227887900|ref|ZP_04005705.1| 23S rRNA methyltransferase J [Escherichia coli 83972]
gi|237706069|ref|ZP_04536550.1| ribosomal RNA large subunit methyltransferase J [Escherichia sp.
3_2_53FAA]
gi|238902281|ref|YP_002928077.1| 23S rRNA methyltransferase J [Escherichia coli BW2952]
gi|251786449|ref|YP_003000753.1| 23S rRNA 2'-O-ribose U2552 methyltransferase [Escherichia coli
BL21(DE3)]
gi|253771987|ref|YP_003034818.1| 23S rRNA methyltransferase J [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254163121|ref|YP_003046229.1| 23S rRNA methyltransferase J [Escherichia coli B str. REL606]
gi|254289871|ref|YP_003055619.1| 23S rRNA methyltransferase [Escherichia coli BL21(DE3)]
gi|254795128|ref|YP_003079965.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str.
TW14359]
gi|260845992|ref|YP_003223770.1| 23S rRNA methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|260857306|ref|YP_003231197.1| 23S rRNA methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|261228190|ref|ZP_05942471.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. FRIK2000]
gi|261255046|ref|ZP_05947579.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. FRIK966]
gi|291284553|ref|YP_003501371.1| ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) [Escherichia coli
O55:H7 str. CB9615]
gi|293406788|ref|ZP_06650714.1| rrmJ [Escherichia coli FVEC1412]
gi|293416609|ref|ZP_06659248.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
B185]
gi|293449513|ref|ZP_06663934.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
B088]
gi|297520551|ref|ZP_06938937.1| 23S rRNA methyltransferase J [Escherichia coli OP50]
gi|298382529|ref|ZP_06992126.1| rrmJ [Escherichia coli FVEC1302]
gi|300817568|ref|ZP_07097784.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 107-1]
gi|300823857|ref|ZP_07103981.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 119-7]
gi|300897944|ref|ZP_07116322.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 198-1]
gi|300904366|ref|ZP_07122218.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 84-1]
gi|300918937|ref|ZP_07135495.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 115-1]
gi|300926080|ref|ZP_07141899.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 182-1]
gi|300929871|ref|ZP_07145316.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 187-1]
gi|300938091|ref|ZP_07152868.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 21-1]
gi|300948830|ref|ZP_07162897.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 116-1]
gi|300955765|ref|ZP_07168109.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 175-1]
gi|300980088|ref|ZP_07174838.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 200-1]
gi|300990826|ref|ZP_07179353.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 45-1]
gi|301022034|ref|ZP_07185977.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 69-1]
gi|301025976|ref|ZP_07189459.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 196-1]
gi|301047977|ref|ZP_07195020.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 185-1]
gi|301301763|ref|ZP_07207897.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 124-1]
gi|301326396|ref|ZP_07219752.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 78-1]
gi|301644890|ref|ZP_07244861.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 146-1]
gi|306816479|ref|ZP_07450611.1| 23S rRNA methyltransferase J [Escherichia coli NC101]
gi|307313116|ref|ZP_07592742.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
W]
gi|309793756|ref|ZP_07688182.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 145-7]
gi|312968483|ref|ZP_07782692.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
2362-75]
gi|312972547|ref|ZP_07786721.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
1827-70]
gi|331643877|ref|ZP_08345008.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
H736]
gi|331648979|ref|ZP_08350067.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
M605]
gi|331654783|ref|ZP_08355783.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
M718]
gi|331659466|ref|ZP_08360408.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TA206]
gi|331664791|ref|ZP_08365696.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TA143]
gi|331670006|ref|ZP_08370851.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TA271]
gi|331679258|ref|ZP_08379930.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
H591]
gi|331684826|ref|ZP_08385418.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
H299]
gi|332279990|ref|ZP_08392403.1| 23S rRNA methyltransferase [Shigella sp. D9]
gi|366160428|ref|ZP_09460290.1| 23S rRNA methyltransferase J [Escherichia sp. TW09308]
gi|378711366|ref|YP_005276259.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
KO11FL]
gi|383180359|ref|YP_005458364.1| 23S rRNA methyltransferase J [Shigella sonnei 53G]
gi|384544775|ref|YP_005728839.1| Ribosomal RNA large subunit methyltransferase J [Shigella flexneri
2002017]
gi|386282284|ref|ZP_10059937.1| ribosomal RNA large subunit methyltransferase E [Escherichia sp.
4_1_40B]
gi|386594105|ref|YP_006090505.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DH1]
gi|386601205|ref|YP_006102711.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
IHE3034]
gi|386602738|ref|YP_006109038.1| 23S rRNA methyltransferase J [Escherichia coli UM146]
gi|386610568|ref|YP_006126054.1| 23S rRNA methyltransferase [Escherichia coli W]
gi|386615966|ref|YP_006135632.1| ribosomal RNA large subunit methyltransferase RrmJ [Escherichia
coli UMNK88]
gi|386620792|ref|YP_006140372.1| 23S ribosomal RNA methyltransferase J [Escherichia coli NA114]
gi|386625985|ref|YP_006145713.1| 23S rRNA methyltransferase [Escherichia coli O7:K1 str. CE10]
gi|386631061|ref|YP_006150781.1| 23S rRNA methyltransferase J [Escherichia coli str. 'clone D i2']
gi|386635981|ref|YP_006155700.1| 23S rRNA methyltransferase J [Escherichia coli str. 'clone D i14']
gi|386699853|ref|YP_006163690.1| 23S rRNA methyltransferase J [Escherichia coli KO11FL]
gi|386706445|ref|YP_006170292.1| Ribosomal RNA large subunit methyltransferase J [Escherichia coli
P12b]
gi|386711086|ref|YP_006174807.1| 23S rRNA methyltransferase J [Escherichia coli W]
gi|387508583|ref|YP_006160839.1| 23S rRNA methyltransferase J [Escherichia coli O55:H7 str. RM12579]
gi|387608902|ref|YP_006097758.1| cell division protein [Escherichia coli 042]
gi|387613869|ref|YP_006116985.1| cell division protein [Escherichia coli ETEC H10407]
gi|387618475|ref|YP_006121497.1| 23S rRNA methyltransferase J [Escherichia coli O83:H1 str. NRG
857C]
gi|387622841|ref|YP_006130469.1| ribosomal RNA large subunit methyltransferase [Escherichia coli
DH1]
gi|387831064|ref|YP_003351001.1| 23S rRNA methyltransferase [Escherichia coli SE15]
gi|387884363|ref|YP_006314665.1| 23S rRNA methyltransferase J [Escherichia coli Xuzhou21]
gi|388479172|ref|YP_491364.1| 23S rRNA methyltransferase [Escherichia coli str. K-12 substr.
W3110]
gi|404376558|ref|ZP_10981716.1| ribosomal RNA large subunit methyltransferase E [Escherichia sp.
1_1_43]
gi|407471153|ref|YP_006782404.1| 23S rRNA methyltransferase J [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407480190|ref|YP_006777339.1| 23S rRNA methyltransferase J [Escherichia coli O104:H4 str.
2011C-3493]
gi|410480751|ref|YP_006768297.1| 23S rRNA methyltransferase J [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414577968|ref|ZP_11435141.1| ribosomal RNA large subunit methyltransferase J [Shigella sonnei
3233-85]
gi|415776344|ref|ZP_11487928.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3431]
gi|415787459|ref|ZP_11494087.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EPECa14]
gi|415795656|ref|ZP_11497169.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
E128010]
gi|415811186|ref|ZP_11503536.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
LT-68]
gi|415830702|ref|ZP_11516570.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
OK1357]
gi|415839213|ref|ZP_11521031.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
RN587/1]
gi|415851020|ref|ZP_11527815.1| ribosomal RNA large subunit methyltransferase J [Shigella sonnei
53G]
gi|415857250|ref|ZP_11532024.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
2a str. 2457T]
gi|415861804|ref|ZP_11535414.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 85-1]
gi|415875701|ref|ZP_11542380.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 79-10]
gi|416270033|ref|ZP_11642623.1| 23S rRNA methyltransferase J [Shigella dysenteriae CDC 74-1112]
gi|416281394|ref|ZP_11645790.1| 23S rRNA methyltransferase J [Shigella boydii ATCC 9905]
gi|416294225|ref|ZP_11650724.1| 23S rRNA methyltransferase J [Shigella flexneri CDC 796-83]
gi|416308489|ref|ZP_11655165.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. 1044]
gi|416322352|ref|ZP_11664200.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. EC1212]
gi|416332588|ref|ZP_11670499.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. 1125]
gi|416337238|ref|ZP_11673664.1| 23S rRNA methyltransferase J [Escherichia coli WV_060327]
gi|416341104|ref|ZP_11675825.1| 23S rRNA methyltransferase J [Escherichia coli EC4100B]
gi|416777678|ref|ZP_11875329.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. G5101]
gi|416789072|ref|ZP_11880254.1| 23S rRNA methyltransferase J [Escherichia coli O157:H- str. 493-89]
gi|416800981|ref|ZP_11885159.1| 23S rRNA methyltransferase J [Escherichia coli O157:H- str. H 2687]
gi|416811613|ref|ZP_11889970.1| 23S rRNA methyltransferase J [Escherichia coli O55:H7 str. 3256-97]
gi|416822121|ref|ZP_11894628.1| 23S rRNA methyltransferase J [Escherichia coli O55:H7 str. USDA
5905]
gi|416832513|ref|ZP_11899724.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. LSU-61]
gi|416899511|ref|ZP_11928978.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_7v]
gi|417086879|ref|ZP_11953976.1| 23S rRNA methyltransferase J [Escherichia coli cloneA_i1]
gi|417117451|ref|ZP_11968312.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
1.2741]
gi|417123733|ref|ZP_11972643.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
97.0246]
gi|417134175|ref|ZP_11978960.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
5.0588]
gi|417138684|ref|ZP_11982335.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
97.0259]
gi|417147339|ref|ZP_11988186.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
1.2264]
gi|417156513|ref|ZP_11994137.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0497]
gi|417163137|ref|ZP_11998467.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0741]
gi|417173714|ref|ZP_12003510.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3.2608]
gi|417184019|ref|ZP_12009711.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
93.0624]
gi|417222552|ref|ZP_12025992.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.154]
gi|417228544|ref|ZP_12030302.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
5.0959]
gi|417245046|ref|ZP_12038785.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
9.0111]
gi|417250237|ref|ZP_12042021.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
4.0967]
gi|417268211|ref|ZP_12055572.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3.3884]
gi|417273016|ref|ZP_12060365.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
2.4168]
gi|417276269|ref|ZP_12063600.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3.2303]
gi|417280488|ref|ZP_12067788.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3003]
gi|417285767|ref|ZP_12073058.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW07793]
gi|417292498|ref|ZP_12079779.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
B41]
gi|417297289|ref|ZP_12084536.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
900105 (10e)]
gi|417309709|ref|ZP_12096539.1| Ribosomal RNA large subunit methyltransferase E [Escherichia coli
PCN033]
gi|417582795|ref|ZP_12233596.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_B2F1]
gi|417588291|ref|ZP_12239055.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_C165-02]
gi|417598587|ref|ZP_12249215.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3030-1]
gi|417604063|ref|ZP_12254628.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_94C]
gi|417609870|ref|ZP_12260368.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_DG131-3]
gi|417614783|ref|ZP_12265238.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_EH250]
gi|417625265|ref|ZP_12275558.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_H.1.8]
gi|417630633|ref|ZP_12280868.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_MHI813]
gi|417636272|ref|ZP_12286482.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_S1191]
gi|417641084|ref|ZP_12291218.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TX1999]
gi|417663760|ref|ZP_12313340.1| cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Escherichia coli AA86]
gi|417668666|ref|ZP_12318207.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_O31]
gi|417674110|ref|ZP_12323547.1| ribosomal RNA large subunit methyltransferase J [Shigella
dysenteriae 155-74]
gi|417683905|ref|ZP_12333247.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
3594-74]
gi|417691531|ref|ZP_12340741.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
5216-82]
gi|417703503|ref|ZP_12352607.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-218]
gi|417709270|ref|ZP_12358295.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
VA-6]
gi|417714235|ref|ZP_12363193.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-272]
gi|417719083|ref|ZP_12367974.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-227]
gi|417724833|ref|ZP_12373629.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-304]
gi|417730139|ref|ZP_12378830.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-671]
gi|417735260|ref|ZP_12383907.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
2747-71]
gi|417740049|ref|ZP_12388621.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
4343-70]
gi|417745093|ref|ZP_12393614.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
2930-71]
gi|417757536|ref|ZP_12405602.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC2B]
gi|417806826|ref|ZP_12453758.1| 23S rRNA methyltransferase J [Escherichia coli O104:H4 str.
LB226692]
gi|417829659|ref|ZP_12476204.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
J1713]
gi|417834573|ref|ZP_12481015.1| 23S rRNA methyltransferase J [Escherichia coli O104:H4 str.
01-09591]
gi|417865994|ref|ZP_12511037.1| rlmE [Escherichia coli O104:H4 str. C227-11]
gi|417945984|ref|ZP_12589210.1| 23S rRNA methyltransferase J [Escherichia coli XH140A]
gi|417977257|ref|ZP_12618043.1| 23S rRNA methyltransferase J [Escherichia coli XH001]
gi|418040923|ref|ZP_12679155.1| 23S rRNA methyltransferase J [Escherichia coli W26]
gi|418258687|ref|ZP_12881883.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
6603-63]
gi|418268654|ref|ZP_12887323.1| ribosomal RNA large subunit methyltransferase J [Shigella sonnei
str. Moseley]
gi|418941597|ref|ZP_13494919.1| 23S rRNA methyltransferase J [Escherichia coli O157:H43 str. T22]
gi|418956438|ref|ZP_13508363.1| 23S rRNA methyltransferase J [Escherichia coli J53]
gi|418998588|ref|ZP_13546173.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC1A]
gi|419003912|ref|ZP_13551425.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC1B]
gi|419009583|ref|ZP_13557002.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC1C]
gi|419015165|ref|ZP_13562506.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC1D]
gi|419020215|ref|ZP_13567515.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC1E]
gi|419025677|ref|ZP_13572897.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC2A]
gi|419030809|ref|ZP_13577958.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC2C]
gi|419036380|ref|ZP_13583457.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC2D]
gi|419041514|ref|ZP_13588533.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC2E]
gi|419047055|ref|ZP_13593989.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC3A]
gi|419052955|ref|ZP_13599822.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC3B]
gi|419058953|ref|ZP_13605755.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC3C]
gi|419064450|ref|ZP_13611172.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC3D]
gi|419071400|ref|ZP_13617013.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC3E]
gi|419077079|ref|ZP_13622582.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC3F]
gi|419082429|ref|ZP_13627875.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC4A]
gi|419088258|ref|ZP_13633610.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC4B]
gi|419094250|ref|ZP_13639530.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC4C]
gi|419100060|ref|ZP_13645252.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC4D]
gi|419105803|ref|ZP_13650928.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC4E]
gi|419111228|ref|ZP_13656280.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC4F]
gi|419116726|ref|ZP_13661738.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC5A]
gi|419122441|ref|ZP_13667384.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC5B]
gi|419127769|ref|ZP_13672644.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC5C]
gi|419133290|ref|ZP_13678118.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC5D]
gi|419138446|ref|ZP_13683237.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC5E]
gi|419144253|ref|ZP_13688985.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC6A]
gi|419150139|ref|ZP_13694788.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC6B]
gi|419155649|ref|ZP_13700206.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC6C]
gi|419161001|ref|ZP_13705499.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC6D]
gi|419166051|ref|ZP_13710504.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC6E]
gi|419172020|ref|ZP_13715901.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC7A]
gi|419176666|ref|ZP_13720478.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC7B]
gi|419182584|ref|ZP_13726194.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC7C]
gi|419188202|ref|ZP_13731709.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC7D]
gi|419193329|ref|ZP_13736776.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC7E]
gi|419211633|ref|ZP_13754702.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC8C]
gi|419217572|ref|ZP_13760568.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC8D]
gi|419228777|ref|ZP_13771620.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC9A]
gi|419234201|ref|ZP_13776970.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC9B]
gi|419239748|ref|ZP_13782456.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC9C]
gi|419245246|ref|ZP_13787880.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC9D]
gi|419251107|ref|ZP_13793676.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC9E]
gi|419256784|ref|ZP_13799287.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC10A]
gi|419263085|ref|ZP_13805493.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC10B]
gi|419269049|ref|ZP_13811393.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC10C]
gi|419274540|ref|ZP_13816830.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC10D]
gi|419279825|ref|ZP_13822068.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC10E]
gi|419286091|ref|ZP_13828255.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC10F]
gi|419291378|ref|ZP_13833464.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC11A]
gi|419296664|ref|ZP_13838703.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC11B]
gi|419302181|ref|ZP_13844174.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC11C]
gi|419308166|ref|ZP_13850061.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC11D]
gi|419313201|ref|ZP_13855060.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC11E]
gi|419318629|ref|ZP_13860428.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC12A]
gi|419324898|ref|ZP_13866586.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC12B]
gi|419330834|ref|ZP_13872432.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC12C]
gi|419336323|ref|ZP_13877841.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC12D]
gi|419341736|ref|ZP_13883192.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC12E]
gi|419346930|ref|ZP_13888301.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC13A]
gi|419351398|ref|ZP_13892729.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC13B]
gi|419356869|ref|ZP_13898117.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC13C]
gi|419361849|ref|ZP_13903060.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC13D]
gi|419367020|ref|ZP_13908172.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC13E]
gi|419371756|ref|ZP_13912866.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC14A]
gi|419377252|ref|ZP_13918272.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC14B]
gi|419382588|ref|ZP_13923532.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC14C]
gi|419387877|ref|ZP_13928747.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC14D]
gi|419393335|ref|ZP_13934137.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC15A]
gi|419398437|ref|ZP_13939200.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC15B]
gi|419403719|ref|ZP_13944439.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC15C]
gi|419408877|ref|ZP_13949563.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC15D]
gi|419414426|ref|ZP_13955064.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC15E]
gi|419702011|ref|ZP_14229609.1| 23S rRNA methyltransferase J [Escherichia coli SCI-07]
gi|419805310|ref|ZP_14330449.1| 23S rRNA methyltransferase J [Escherichia coli AI27]
gi|419810579|ref|ZP_14335459.1| 23S rRNA methyltransferase J [Escherichia coli O32:H37 str. P4]
gi|419866807|ref|ZP_14389156.1| 23S rRNA methyltransferase J [Escherichia coli O103:H25 str.
CVM9340]
gi|419868260|ref|ZP_14390552.1| 23S rRNA methyltransferase J [Escherichia coli O103:H2 str.
CVM9450]
gi|419877678|ref|ZP_14399226.1| 23S rRNA methyltransferase J [Escherichia coli O111:H11 str.
CVM9534]
gi|419883538|ref|ZP_14404637.1| 23S rRNA methyltransferase J [Escherichia coli O111:H11 str.
CVM9545]
gi|419903914|ref|ZP_14422927.1| 23S rRNA methyltransferase J [Escherichia coli O26:H11 str.
CVM9942]
gi|419909639|ref|ZP_14428178.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O26:H11 str. CVM10026]
gi|419913512|ref|ZP_14431943.1| 23S rRNA methyltransferase J [Escherichia coli KD1]
gi|419922599|ref|ZP_14440611.1| 23S rRNA methyltransferase J [Escherichia coli 541-15]
gi|419927618|ref|ZP_14445352.1| 23S rRNA methyltransferase J [Escherichia coli 541-1]
gi|419935104|ref|ZP_14452191.1| 23S rRNA methyltransferase J [Escherichia coli 576-1]
gi|419939331|ref|ZP_14456126.1| 23S rRNA methyltransferase J [Escherichia coli 75]
gi|419946195|ref|ZP_14462612.1| 23S rRNA methyltransferase J [Escherichia coli HM605]
gi|419947946|ref|ZP_14464254.1| 23S rRNA methyltransferase J [Escherichia coli CUMT8]
gi|420098942|ref|ZP_14610189.1| 23S rRNA methyltransferase J [Escherichia coli O111:H11 str.
CVM9455]
gi|420105851|ref|ZP_14616284.1| 23S rRNA methyltransferase J [Escherichia coli O111:H11 str.
CVM9553]
gi|420118204|ref|ZP_14627537.1| 23S rRNA methyltransferase J [Escherichia coli O26:H11 str.
CVM10021]
gi|420118605|ref|ZP_14627926.1| 23S rRNA methyltransferase J [Escherichia coli O26:H11 str.
CVM10030]
gi|420130145|ref|ZP_14638649.1| 23S rRNA methyltransferase J [Escherichia coli O26:H11 str.
CVM10224]
gi|420135135|ref|ZP_14643229.1| 23S rRNA methyltransferase J [Escherichia coli O26:H11 str.
CVM9952]
gi|420271450|ref|ZP_14773803.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA22]
gi|420277223|ref|ZP_14779504.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA40]
gi|420282075|ref|ZP_14784308.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW06591]
gi|420288375|ref|ZP_14790559.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW10246]
gi|420294298|ref|ZP_14796412.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW11039]
gi|420300151|ref|ZP_14802196.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW09109]
gi|420306167|ref|ZP_14808156.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW10119]
gi|420311579|ref|ZP_14813508.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1738]
gi|420317105|ref|ZP_14818978.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1734]
gi|420322147|ref|ZP_14823971.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
2850-71]
gi|420327338|ref|ZP_14829083.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
CCH060]
gi|420333127|ref|ZP_14834772.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-1770]
gi|420337490|ref|ZP_14839052.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-315]
gi|420343581|ref|ZP_14845046.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-404]
gi|420349133|ref|ZP_14850514.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
965-58]
gi|420354702|ref|ZP_14855783.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
4444-74]
gi|420360535|ref|ZP_14861490.1| ribosomal RNA large subunit methyltransferase J [Shigella sonnei
3226-85]
gi|420365209|ref|ZP_14866078.1| ribosomal RNA large subunit methyltransferase J [Shigella sonnei
4822-66]
gi|420375642|ref|ZP_14875490.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
1235-66]
gi|420382304|ref|ZP_14881741.1| ribosomal RNA large subunit methyltransferase J [Shigella
dysenteriae 225-75]
gi|420387432|ref|ZP_14886773.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EPECa12]
gi|420393297|ref|ZP_14892543.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EPEC C342-62]
gi|421684342|ref|ZP_16124129.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
1485-80]
gi|421774853|ref|ZP_16211464.1| 23S rRNA methyltransferase J [Escherichia coli AD30]
gi|421814216|ref|ZP_16249923.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
8.0416]
gi|421820011|ref|ZP_16255498.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
10.0821]
gi|421826023|ref|ZP_16261377.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK920]
gi|421832740|ref|ZP_16268022.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA7]
gi|422332655|ref|ZP_16413668.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
4_1_47FAA]
gi|422353690|ref|ZP_16434439.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 117-3]
gi|422357235|ref|ZP_16437902.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 110-3]
gi|422362355|ref|ZP_16442926.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 153-1]
gi|422370358|ref|ZP_16450751.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 16-3]
gi|422376570|ref|ZP_16456819.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 60-1]
gi|422380018|ref|ZP_16460199.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 57-2]
gi|422749719|ref|ZP_16803630.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
H252]
gi|422753879|ref|ZP_16807705.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
H263]
gi|422760648|ref|ZP_16814408.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
E1167]
gi|422767326|ref|ZP_16821052.1| ribosomal RNA large methyltransferase J [Escherichia coli E1520]
gi|422770944|ref|ZP_16824634.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
E482]
gi|422775567|ref|ZP_16829222.1| ribosomal RNA large methyltransferase J [Escherichia coli H120]
gi|422779860|ref|ZP_16832645.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW10509]
gi|422787287|ref|ZP_16840025.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
H489]
gi|422793194|ref|ZP_16845891.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TA007]
gi|422801125|ref|ZP_16849622.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
M863]
gi|422818346|ref|ZP_16866559.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
M919]
gi|422827417|ref|ZP_16875591.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
B093]
gi|422833471|ref|ZP_16881537.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
E101]
gi|422841195|ref|ZP_16889165.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
H397]
gi|422959952|ref|ZP_16971587.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
H494]
gi|422969658|ref|ZP_16973451.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
TA124]
gi|422989382|ref|ZP_16980154.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. C227-11]
gi|422996277|ref|ZP_16987040.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. C236-11]
gi|423001426|ref|ZP_16992179.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 09-7901]
gi|423005086|ref|ZP_16995831.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 04-8351]
gi|423011591|ref|ZP_17002324.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-3677]
gi|423020819|ref|ZP_17011526.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4404]
gi|423025984|ref|ZP_17016679.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4522]
gi|423031803|ref|ZP_17022489.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4623]
gi|423034675|ref|ZP_17025353.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|423039803|ref|ZP_17030472.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|423046487|ref|ZP_17037146.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|423055024|ref|ZP_17043830.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|423057016|ref|ZP_17045815.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|423702681|ref|ZP_17677113.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
H730]
gi|423707479|ref|ZP_17681859.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
B799]
gi|423727136|ref|ZP_17701050.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA31]
gi|424079342|ref|ZP_17816310.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FDA505]
gi|424085799|ref|ZP_17822286.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FDA517]
gi|424092199|ref|ZP_17828129.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK1996]
gi|424098870|ref|ZP_17834146.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK1985]
gi|424105084|ref|ZP_17839827.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK1990]
gi|424111730|ref|ZP_17845960.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
93-001]
gi|424117667|ref|ZP_17851501.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA3]
gi|424123856|ref|ZP_17857163.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA5]
gi|424130007|ref|ZP_17862910.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA9]
gi|424136331|ref|ZP_17868779.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA10]
gi|424142883|ref|ZP_17874750.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA14]
gi|424149284|ref|ZP_17880655.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA15]
gi|424155134|ref|ZP_17886066.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA24]
gi|424253732|ref|ZP_17891612.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA25]
gi|424332520|ref|ZP_17897517.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA28]
gi|424451569|ref|ZP_17903239.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA32]
gi|424457759|ref|ZP_17908869.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA33]
gi|424464215|ref|ZP_17914592.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA39]
gi|424470521|ref|ZP_17920333.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA41]
gi|424477029|ref|ZP_17926342.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA42]
gi|424482785|ref|ZP_17931761.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW07945]
gi|424488967|ref|ZP_17937513.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW09098]
gi|424495620|ref|ZP_17943242.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW09195]
gi|424502319|ref|ZP_17949206.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4203]
gi|424508572|ref|ZP_17954956.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4196]
gi|424515923|ref|ZP_17960558.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW14313]
gi|424522124|ref|ZP_17966236.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW14301]
gi|424528001|ref|ZP_17971713.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4421]
gi|424534148|ref|ZP_17977492.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4422]
gi|424540200|ref|ZP_17983140.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4013]
gi|424546329|ref|ZP_17988698.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4402]
gi|424552552|ref|ZP_17994393.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4439]
gi|424558741|ref|ZP_18000147.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4436]
gi|424565079|ref|ZP_18006078.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4437]
gi|424571207|ref|ZP_18011752.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4448]
gi|424577363|ref|ZP_18017413.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1845]
gi|424583183|ref|ZP_18022826.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1863]
gi|424746869|ref|ZP_18175086.1| 23S rRNA methyltransferase J [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424760984|ref|ZP_18188569.1| 23S rRNA methyltransferase J [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424839430|ref|ZP_18264067.1| 23S rRNA methyltransferase J [Shigella flexneri 5a str. M90T]
gi|425099856|ref|ZP_18502585.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3.4870]
gi|425105953|ref|ZP_18508267.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
5.2239]
gi|425111966|ref|ZP_18513883.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
6.0172]
gi|425116726|ref|ZP_18518516.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
8.0566]
gi|425121478|ref|ZP_18523164.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
8.0569]
gi|425127890|ref|ZP_18529054.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
8.0586]
gi|425133632|ref|ZP_18534478.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
8.2524]
gi|425140208|ref|ZP_18540586.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
10.0833]
gi|425145921|ref|ZP_18545912.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
10.0869]
gi|425152037|ref|ZP_18551648.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
88.0221]
gi|425157908|ref|ZP_18557168.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA34]
gi|425164260|ref|ZP_18563143.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FDA506]
gi|425170003|ref|ZP_18568472.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FDA507]
gi|425176063|ref|ZP_18574179.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FDA504]
gi|425182105|ref|ZP_18579796.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK1999]
gi|425188372|ref|ZP_18585641.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK1997]
gi|425195139|ref|ZP_18591905.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
NE1487]
gi|425201613|ref|ZP_18597817.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
NE037]
gi|425207998|ref|ZP_18603791.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK2001]
gi|425213753|ref|ZP_18609149.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA4]
gi|425219875|ref|ZP_18614834.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA23]
gi|425226425|ref|ZP_18620888.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA49]
gi|425232682|ref|ZP_18626718.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA45]
gi|425238605|ref|ZP_18632321.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TT12B]
gi|425244841|ref|ZP_18638143.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MA6]
gi|425251032|ref|ZP_18643971.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
5905]
gi|425256819|ref|ZP_18649327.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
CB7326]
gi|425263071|ref|ZP_18655070.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC96038]
gi|425269067|ref|ZP_18660694.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
5412]
gi|425274373|ref|ZP_18665771.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW15901]
gi|425279578|ref|ZP_18670806.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
ARS4.2123]
gi|425284954|ref|ZP_18675984.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW00353]
gi|425290319|ref|ZP_18681145.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3006]
gi|425296523|ref|ZP_18686687.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA38]
gi|425302048|ref|ZP_18691932.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
07798]
gi|425306970|ref|ZP_18696650.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
N1]
gi|425313211|ref|ZP_18702386.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1735]
gi|425319194|ref|ZP_18707978.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1736]
gi|425325287|ref|ZP_18713640.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1737]
gi|425331654|ref|ZP_18719488.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1846]
gi|425337835|ref|ZP_18725188.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1847]
gi|425344143|ref|ZP_18731030.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1848]
gi|425349950|ref|ZP_18736414.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1849]
gi|425356252|ref|ZP_18742316.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1850]
gi|425362214|ref|ZP_18747858.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1856]
gi|425368431|ref|ZP_18753551.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1862]
gi|425374749|ref|ZP_18759387.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1864]
gi|425381455|ref|ZP_18765454.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1865]
gi|425387637|ref|ZP_18771192.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1866]
gi|425394288|ref|ZP_18777393.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1868]
gi|425400430|ref|ZP_18783131.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1869]
gi|425406517|ref|ZP_18788735.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1870]
gi|425412902|ref|ZP_18794661.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
NE098]
gi|425419217|ref|ZP_18800482.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK523]
gi|425424053|ref|ZP_18805211.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
0.1288]
gi|425430490|ref|ZP_18811095.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
0.1304]
gi|427806380|ref|ZP_18973447.1| cell division protein [Escherichia coli chi7122]
gi|427810971|ref|ZP_18978036.1| cell division protein [Escherichia coli]
gi|428948923|ref|ZP_19021195.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
88.1467]
gi|428954996|ref|ZP_19026788.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
88.1042]
gi|428960986|ref|ZP_19032276.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
89.0511]
gi|428967602|ref|ZP_19038310.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
90.0091]
gi|428973324|ref|ZP_19043646.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
90.0039]
gi|428979867|ref|ZP_19049683.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
90.2281]
gi|428985591|ref|ZP_19054980.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
93.0055]
gi|428991716|ref|ZP_19060700.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
93.0056]
gi|428997604|ref|ZP_19066194.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
94.0618]
gi|429003873|ref|ZP_19071970.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
95.0183]
gi|429009972|ref|ZP_19077426.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
95.1288]
gi|429016494|ref|ZP_19083372.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
95.0943]
gi|429022306|ref|ZP_19088822.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0428]
gi|429028394|ref|ZP_19094383.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0427]
gi|429034567|ref|ZP_19100085.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0939]
gi|429040653|ref|ZP_19105749.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0932]
gi|429046585|ref|ZP_19111293.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0107]
gi|429051924|ref|ZP_19116486.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
97.0003]
gi|429057376|ref|ZP_19121661.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
97.1742]
gi|429062875|ref|ZP_19126863.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
97.0007]
gi|429069108|ref|ZP_19132560.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0672]
gi|429075049|ref|ZP_19138297.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0678]
gi|429080248|ref|ZP_19143380.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0713]
gi|429720847|ref|ZP_19255769.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429772745|ref|ZP_19304763.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02030]
gi|429778111|ref|ZP_19310079.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429786417|ref|ZP_19318310.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02092]
gi|429787361|ref|ZP_19319251.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02093]
gi|429793157|ref|ZP_19325003.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02281]
gi|429799736|ref|ZP_19331530.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02318]
gi|429803352|ref|ZP_19335110.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02913]
gi|429807993|ref|ZP_19339713.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-03439]
gi|429813692|ref|ZP_19345369.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-04080]
gi|429818903|ref|ZP_19350535.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-03943]
gi|429828291|ref|ZP_19359310.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0109]
gi|429834726|ref|ZP_19365027.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
97.0010]
gi|429905251|ref|ZP_19371228.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429909387|ref|ZP_19375350.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-9941]
gi|429915259|ref|ZP_19381205.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429920305|ref|ZP_19386233.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429926109|ref|ZP_19392021.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429930044|ref|ZP_19395945.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429936583|ref|ZP_19402468.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429942264|ref|ZP_19408137.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429944947|ref|ZP_19410808.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429952503|ref|ZP_19418348.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955858|ref|ZP_19421688.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432355185|ref|ZP_19598453.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE2]
gi|432359633|ref|ZP_19602847.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE4]
gi|432364430|ref|ZP_19607587.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE5]
gi|432366636|ref|ZP_19609754.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE10]
gi|432373754|ref|ZP_19616786.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE11]
gi|432378367|ref|ZP_19621351.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE12]
gi|432382909|ref|ZP_19625848.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE15]
gi|432388940|ref|ZP_19631820.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE16]
gi|432393770|ref|ZP_19636594.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE21]
gi|432399133|ref|ZP_19641908.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE25]
gi|432403560|ref|ZP_19646305.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE26]
gi|432408258|ref|ZP_19650962.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE28]
gi|432413408|ref|ZP_19656063.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE39]
gi|432418704|ref|ZP_19661299.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE44]
gi|432423593|ref|ZP_19666132.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE178]
gi|432427821|ref|ZP_19670305.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE181]
gi|432433399|ref|ZP_19675824.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE187]
gi|432437994|ref|ZP_19680378.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE188]
gi|432442670|ref|ZP_19685006.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE189]
gi|432447790|ref|ZP_19690087.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE191]
gi|432451424|ref|ZP_19693681.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE193]
gi|432458307|ref|ZP_19700484.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE201]
gi|432462524|ref|ZP_19704658.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE204]
gi|432472532|ref|ZP_19714570.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE206]
gi|432477517|ref|ZP_19719507.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE208]
gi|432482513|ref|ZP_19724464.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE210]
gi|432486947|ref|ZP_19728857.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE212]
gi|432490964|ref|ZP_19732828.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE213]
gi|432497300|ref|ZP_19739093.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE214]
gi|432501742|ref|ZP_19743494.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE216]
gi|432506057|ref|ZP_19747777.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE220]
gi|432515576|ref|ZP_19752792.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE224]
gi|432519379|ref|ZP_19756559.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE228]
gi|432525512|ref|ZP_19762631.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE230]
gi|432528021|ref|ZP_19765098.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE233]
gi|432535526|ref|ZP_19772490.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE234]
gi|432539537|ref|ZP_19776431.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE235]
gi|432544923|ref|ZP_19781758.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE236]
gi|432550405|ref|ZP_19787165.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE237]
gi|432555249|ref|ZP_19791968.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE47]
gi|432560455|ref|ZP_19797111.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE49]
gi|432565544|ref|ZP_19802108.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE51]
gi|432570409|ref|ZP_19806916.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE53]
gi|432575380|ref|ZP_19811854.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE55]
gi|432577414|ref|ZP_19813864.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE56]
gi|432589564|ref|ZP_19825917.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE58]
gi|432594380|ref|ZP_19830693.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE60]
gi|432599432|ref|ZP_19835703.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE62]
gi|432604018|ref|ZP_19840249.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE66]
gi|432609220|ref|ZP_19845402.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE67]
gi|432613190|ref|ZP_19849348.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE72]
gi|432618428|ref|ZP_19854533.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE75]
gi|432623546|ref|ZP_19859565.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE76]
gi|432628814|ref|ZP_19864784.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE77]
gi|432633057|ref|ZP_19868978.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE80]
gi|432638388|ref|ZP_19874254.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE81]
gi|432642747|ref|ZP_19878573.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE83]
gi|432647858|ref|ZP_19883644.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE86]
gi|432652778|ref|ZP_19888524.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE87]
gi|432657421|ref|ZP_19893118.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE93]
gi|432662391|ref|ZP_19898027.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE111]
gi|432667744|ref|ZP_19903317.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE116]
gi|432672276|ref|ZP_19907800.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE119]
gi|432676308|ref|ZP_19911757.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE142]
gi|432681907|ref|ZP_19917266.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE143]
gi|432687000|ref|ZP_19922291.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE156]
gi|432688455|ref|ZP_19923727.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE161]
gi|432696052|ref|ZP_19931245.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE162]
gi|432700702|ref|ZP_19935847.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE169]
gi|432705920|ref|ZP_19941016.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE171]
gi|432707529|ref|ZP_19942606.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE6]
gi|432715032|ref|ZP_19950060.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE8]
gi|432720314|ref|ZP_19955279.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE9]
gi|432724651|ref|ZP_19959565.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE17]
gi|432729234|ref|ZP_19964109.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE18]
gi|432733937|ref|ZP_19968762.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE45]
gi|432738665|ref|ZP_19973417.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE42]
gi|432742921|ref|ZP_19977636.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE23]
gi|432747164|ref|ZP_19981826.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE43]
gi|432751654|ref|ZP_19986237.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE29]
gi|432756114|ref|ZP_19990659.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE22]
gi|432761023|ref|ZP_19995513.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE46]
gi|432766584|ref|ZP_20001000.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE48]
gi|432767552|ref|ZP_20001946.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE50]
gi|432776262|ref|ZP_20010525.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE54]
gi|432780194|ref|ZP_20014415.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE59]
gi|432785152|ref|ZP_20019330.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE63]
gi|432789187|ref|ZP_20023315.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE65]
gi|432794404|ref|ZP_20028486.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE78]
gi|432795921|ref|ZP_20029962.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE79]
gi|432803363|ref|ZP_20037317.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE84]
gi|432807441|ref|ZP_20041356.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE91]
gi|432810911|ref|ZP_20044770.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE101]
gi|432816953|ref|ZP_20050714.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE115]
gi|432822622|ref|ZP_20056311.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE118]
gi|432824077|ref|ZP_20057747.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE123]
gi|432828816|ref|ZP_20062434.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE135]
gi|432836141|ref|ZP_20069674.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE136]
gi|432840990|ref|ZP_20074450.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE140]
gi|432846228|ref|ZP_20078909.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE141]
gi|432854323|ref|ZP_20082868.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE144]
gi|432865091|ref|ZP_20088339.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE146]
gi|432870642|ref|ZP_20091099.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE147]
gi|432877173|ref|ZP_20094971.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE154]
gi|432888485|ref|ZP_20102237.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE158]
gi|432890556|ref|ZP_20103488.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE165]
gi|432900409|ref|ZP_20110831.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE192]
gi|432906828|ref|ZP_20115367.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE194]
gi|432914674|ref|ZP_20120090.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE190]
gi|432922200|ref|ZP_20125164.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE173]
gi|432928999|ref|ZP_20130100.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE175]
gi|432936367|ref|ZP_20135501.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE184]
gi|432939807|ref|ZP_20137910.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE183]
gi|432949245|ref|ZP_20144168.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE196]
gi|432956938|ref|ZP_20148541.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE197]
gi|432963638|ref|ZP_20153057.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE202]
gi|432969247|ref|ZP_20158159.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE203]
gi|432973459|ref|ZP_20162305.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE207]
gi|432975387|ref|ZP_20164222.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE209]
gi|432982631|ref|ZP_20171402.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE211]
gi|432987033|ref|ZP_20175746.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE215]
gi|432992285|ref|ZP_20180944.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE217]
gi|432996947|ref|ZP_20185530.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE218]
gi|433001543|ref|ZP_20190062.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE223]
gi|433006766|ref|ZP_20195190.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE227]
gi|433009381|ref|ZP_20197794.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE229]
gi|433015485|ref|ZP_20203820.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE104]
gi|433020312|ref|ZP_20208478.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE105]
gi|433025050|ref|ZP_20213024.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE106]
gi|433030096|ref|ZP_20217948.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE109]
gi|433035071|ref|ZP_20222770.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE112]
gi|433040183|ref|ZP_20227776.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE113]
gi|433044723|ref|ZP_20232210.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE117]
gi|433049615|ref|ZP_20236953.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE120]
gi|433054815|ref|ZP_20241982.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE122]
gi|433059667|ref|ZP_20246704.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE124]
gi|433064634|ref|ZP_20251545.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE125]
gi|433069500|ref|ZP_20256275.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE128]
gi|433079371|ref|ZP_20265891.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE131]
gi|433084111|ref|ZP_20270559.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE133]
gi|433088836|ref|ZP_20275202.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE137]
gi|433093567|ref|ZP_20279824.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE138]
gi|433097987|ref|ZP_20284163.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE139]
gi|433102771|ref|ZP_20288844.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE145]
gi|433107435|ref|ZP_20293400.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE148]
gi|433112417|ref|ZP_20298273.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE150]
gi|433117062|ref|ZP_20302848.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE153]
gi|433126750|ref|ZP_20312297.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE160]
gi|433131740|ref|ZP_20317170.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE163]
gi|433136424|ref|ZP_20321759.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE166]
gi|433140814|ref|ZP_20326060.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE167]
gi|433145789|ref|ZP_20330923.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE168]
gi|433150819|ref|ZP_20335820.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE174]
gi|433155331|ref|ZP_20340264.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE176]
gi|433160292|ref|ZP_20345119.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE177]
gi|433165172|ref|ZP_20349903.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE179]
gi|433170148|ref|ZP_20354771.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE180]
gi|433175071|ref|ZP_20359585.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE232]
gi|433180012|ref|ZP_20364398.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE82]
gi|433189990|ref|ZP_20374079.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE88]
gi|433195225|ref|ZP_20379204.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE90]
gi|433199929|ref|ZP_20383817.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE94]
gi|433204906|ref|ZP_20388658.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE95]
gi|433209309|ref|ZP_20392977.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE97]
gi|433214159|ref|ZP_20397742.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE99]
gi|433325713|ref|ZP_20402772.1| 23S rRNA methyltransferase J [Escherichia coli J96]
gi|442593010|ref|ZP_21010966.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442597246|ref|ZP_21015042.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|442605383|ref|ZP_21020215.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Escherichia coli Nissle 1917]
gi|443619252|ref|YP_007383108.1| 23S rRNA methyltransferase J [Escherichia coli APEC O78]
gi|444926805|ref|ZP_21246080.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
09BKT078844]
gi|444932492|ref|ZP_21251513.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0814]
gi|444937918|ref|ZP_21256675.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0815]
gi|444943511|ref|ZP_21262012.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0816]
gi|444949007|ref|ZP_21267310.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0839]
gi|444954618|ref|ZP_21272696.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0848]
gi|444960088|ref|ZP_21277923.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.1753]
gi|444965289|ref|ZP_21282868.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.1775]
gi|444976517|ref|ZP_21293620.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.1805]
gi|444981957|ref|ZP_21298860.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
ATCC 700728]
gi|444987316|ref|ZP_21304090.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA11]
gi|444992624|ref|ZP_21309264.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA19]
gi|444997911|ref|ZP_21314406.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA13]
gi|445003507|ref|ZP_21319892.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA2]
gi|445008878|ref|ZP_21325115.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA47]
gi|445014042|ref|ZP_21330144.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA48]
gi|445019919|ref|ZP_21335881.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA8]
gi|445025326|ref|ZP_21341145.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
7.1982]
gi|445030751|ref|ZP_21346416.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.1781]
gi|445036182|ref|ZP_21351706.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.1762]
gi|445041804|ref|ZP_21357172.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA35]
gi|445047067|ref|ZP_21362312.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3.4880]
gi|445052584|ref|ZP_21367608.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
95.0083]
gi|445058281|ref|ZP_21373137.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0670]
gi|450193283|ref|ZP_21891940.1| 23S rRNA methyltransferase J [Escherichia coli SEPT362]
gi|450222745|ref|ZP_21896900.1| 23S rRNA methyltransferase J [Escherichia coli O08]
gi|450250569|ref|ZP_21901655.1| 23S rRNA methyltransferase J [Escherichia coli S17]
gi|452968186|ref|ZP_21966413.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. EC4009]
gi|83287968|sp|P0C0R8.1|RLME_ECO57 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83287969|sp|P0C0R9.1|RLME_ECOL6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83287970|sp|P0C0R7.1|RLME_ECOLI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=Cell division protein FtsJ; AltName:
Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83287971|sp|P0C0S0.1|RLME_SHIFL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|122422294|sp|Q1R6F9.1|RLME_ECOUT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|122957976|sp|Q0TCT1.1|RLME_ECOL5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|123342473|sp|Q0T0A5.1|RLME_SHIF8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|123558569|sp|Q31W56.1|RLME_SHIBS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|123616070|sp|Q3YX62.1|RLME_SHISS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|143459881|sp|A1AG82.1|RLME_ECOK1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040334|sp|A7ZS75.1|RLME_ECO24 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040685|sp|A8AQ68.1|RLME_CITK8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040688|sp|A8A4Z3.1|RLME_ECOHS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040689|sp|B1IQU4.1|RLME_ECOLC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703296|sp|B7MBU8.1|RLME_ECO45 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703297|sp|B5YS68.1|RLME_ECO5E RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703298|sp|B7NKP6.1|RLME_ECO7I RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703299|sp|B7M085.1|RLME_ECO8A RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703300|sp|B1XGY9.1|RLME_ECODH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703301|sp|B7NDG3.1|RLME_ECOLU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703302|sp|B6I1Q2.1|RLME_ECOSE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703303|sp|B1LFS9.1|RLME_ECOSM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703305|sp|B7LR46.1|RLME_ESCF3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705316|sp|B2U1Z8.1|RLME_SHIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|254809551|sp|B7UJ72.1|RLME_ECO27 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|254809552|sp|B7LHP2.1|RLME_ECO55 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|254809553|sp|B7N363.1|RLME_ECO81 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|259494564|sp|C4ZSR8.1|RLME_ECOBW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|12517791|gb|AAG58313.1|AE005546_7 cell division protein [Escherichia coli O157:H7 str. EDL933]
gi|26110190|gb|AAN82376.1|AE016767_136 Ribosomal RNA large subunit methyltransferase J [Escherichia coli
CFT073]
gi|146027|gb|AAA23812.1| ftsJ [Escherichia coli str. K-12 substr. W3110]
gi|606117|gb|AAA57980.1| ftsJ [Escherichia coli str. K-12 substr. MG1655]
gi|746400|gb|AAA97507.1| regulatory protein [Escherichia coli]
gi|1789569|gb|AAC76211.1| 23S rRNA U2552 2'-O-ribose methyltransferase, SAM-dependent
[Escherichia coli str. K-12 substr. MG1655]
gi|13363531|dbj|BAB37481.1| cell division protein methyltransferase FtsJ [Escherichia coli
O157:H7 str. Sakai]
gi|24053650|gb|AAN44685.1| cell division protein [Shigella flexneri 2a str. 301]
gi|30042776|gb|AAP18499.1| cell division protein [Shigella flexneri 2a str. 2457T]
gi|73857193|gb|AAZ89900.1| cell division protein [Shigella sonnei Ss046]
gi|81246994|gb|ABB67702.1| cell division protein [Shigella boydii Sb227]
gi|85675973|dbj|BAE77223.1| 23S rRNA methyltransferase [Escherichia coli str. K12 substr.
W3110]
gi|91074174|gb|ABE09055.1| cell division protein [Escherichia coli UTI89]
gi|110345011|gb|ABG71248.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
536]
gi|110616593|gb|ABF05260.1| cell division protein [Shigella flexneri 5 str. 8401]
gi|115514597|gb|ABJ02672.1| cell division protein [Escherichia coli APEC O1]
gi|157068342|gb|ABV07597.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
HS]
gi|157080222|gb|ABV19930.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
E24377A]
gi|157085953|gb|ABV15631.1| hypothetical protein CKO_04580 [Citrobacter koseri ATCC BAA-895]
gi|169753499|gb|ACA76198.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
ATCC 8739]
gi|169890549|gb|ACB04256.1| 23S rRNA methyltransferase [Escherichia coli str. K-12 substr.
DH10B]
gi|170519041|gb|ACB17219.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
SMS-3-5]
gi|187427334|gb|ACD06608.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
CDC 3083-94]
gi|188489452|gb|EDU64555.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
53638]
gi|189001103|gb|EDU70089.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4076]
gi|189358551|gb|EDU76970.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4401]
gi|189364840|gb|EDU83256.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4501]
gi|189373884|gb|EDU92300.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC869]
gi|190901915|gb|EDV61664.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
B7A]
gi|190907511|gb|EDV67107.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
F11]
gi|194411731|gb|EDX28055.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
B171]
gi|208727671|gb|EDZ77272.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4206]
gi|208733766|gb|EDZ82453.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4045]
gi|208740393|gb|EDZ88075.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4042]
gi|209157373|gb|ACI34806.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. EC4115]
gi|209758248|gb|ACI77436.1| cell division protein methyltransferase FtsJ [Escherichia coli]
gi|209758250|gb|ACI77437.1| cell division protein methyltransferase FtsJ [Escherichia coli]
gi|209758252|gb|ACI77438.1| cell division protein methyltransferase FtsJ [Escherichia coli]
gi|209758254|gb|ACI77439.1| cell division protein methyltransferase FtsJ [Escherichia coli]
gi|209758256|gb|ACI77440.1| cell division protein methyltransferase FtsJ [Escherichia coli]
gi|209913913|dbj|BAG78987.1| 23S rRNA methyltransferase [Escherichia coli SE11]
gi|215266567|emb|CAS11006.1| 23S rRNA methyltransferase [Escherichia coli O127:H6 str. E2348/69]
gi|217320068|gb|EEC28493.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O157:H7 str. TW14588]
gi|218353616|emb|CAU99813.1| 23S rRNA methyltransferase [Escherichia coli 55989]
gi|218358003|emb|CAQ90649.1| 23S rRNA methyltransferase [Escherichia fergusonii ATCC 35469]
gi|218362517|emb|CAR00141.1| 23S rRNA methyltransferase [Escherichia coli IAI1]
gi|218367018|emb|CAR04789.1| 23S rRNA methyltransferase [Escherichia coli S88]
gi|218371934|emb|CAR19790.1| 23S rRNA methyltransferase [Escherichia coli IAI39]
gi|218429033|emb|CAV17954.1| 23S rRNA methyltransferase [Escherichia coli ED1a]
gi|218433896|emb|CAR14813.1| 23S rRNA methyltransferase [Escherichia coli UMN026]
gi|222034896|emb|CAP77639.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
LF82]
gi|226839968|gb|EEH71989.1| ribosomal RNA large subunit methyltransferase E [Escherichia sp.
1_1_43]
gi|226899109|gb|EEH85368.1| ribosomal RNA large subunit methyltransferase J [Escherichia sp.
3_2_53FAA]
gi|227835296|gb|EEJ45762.1| 23S rRNA methyltransferase J [Escherichia coli 83972]
gi|238859756|gb|ACR61754.1| 23S rRNA methyltransferase [Escherichia coli BW2952]
gi|242378722|emb|CAQ33512.1| 23S rRNA 2'-O-ribose U2552 methyltransferase [Escherichia coli
BL21(DE3)]
gi|253323031|gb|ACT27633.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975022|gb|ACT40693.1| 23S rRNA methyltransferase [Escherichia coli B str. REL606]
gi|253979178|gb|ACT44848.1| 23S rRNA methyltransferase [Escherichia coli BL21(DE3)]
gi|254594528|gb|ACT73889.1| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. TW14359]
gi|257755955|dbj|BAI27457.1| 23S rRNA methyltransferase [Escherichia coli O26:H11 str. 11368]
gi|257761139|dbj|BAI32636.1| 23S rRNA methyltransferase [Escherichia coli O103:H2 str. 12009]
gi|260447794|gb|ACX38216.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DH1]
gi|281180221|dbj|BAI56551.1| 23S rRNA methyltransferase [Escherichia coli SE15]
gi|281602562|gb|ADA75546.1| Ribosomal RNA large subunit methyltransferase J [Shigella flexneri
2002017]
gi|284923202|emb|CBG36296.1| cell division protein [Escherichia coli 042]
gi|290764426|gb|ADD58387.1| Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) [Escherichia coli
O55:H7 str. CB9615]
gi|291322603|gb|EFE62032.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
B088]
gi|291426794|gb|EFE99826.1| rrmJ [Escherichia coli FVEC1412]
gi|291431965|gb|EFF04948.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
B185]
gi|294490488|gb|ADE89244.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
IHE3034]
gi|298277669|gb|EFI19185.1| rrmJ [Escherichia coli FVEC1302]
gi|299879902|gb|EFI88113.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 196-1]
gi|300300162|gb|EFJ56547.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 185-1]
gi|300307862|gb|EFJ62382.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 200-1]
gi|300317360|gb|EFJ67144.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 175-1]
gi|300358336|gb|EFJ74206.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 198-1]
gi|300397749|gb|EFJ81287.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 69-1]
gi|300403689|gb|EFJ87227.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 84-1]
gi|300407046|gb|EFJ90584.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 45-1]
gi|300413933|gb|EFJ97243.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 115-1]
gi|300417869|gb|EFK01180.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 182-1]
gi|300451686|gb|EFK15306.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 116-1]
gi|300456912|gb|EFK20405.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 21-1]
gi|300462204|gb|EFK25697.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 187-1]
gi|300523625|gb|EFK44694.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 119-7]
gi|300529866|gb|EFK50928.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 107-1]
gi|300842744|gb|EFK70504.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 124-1]
gi|300846907|gb|EFK74667.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 78-1]
gi|301076796|gb|EFK91602.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 146-1]
gi|305850044|gb|EFM50503.1| 23S rRNA methyltransferase J [Escherichia coli NC101]
gi|306907027|gb|EFN37535.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
W]
gi|307625222|gb|ADN69526.1| 23S rRNA methyltransferase J [Escherichia coli UM146]
gi|308122713|gb|EFO59975.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 145-7]
gi|309703605|emb|CBJ02945.1| cell division protein [Escherichia coli ETEC H10407]
gi|310334924|gb|EFQ01129.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
1827-70]
gi|312286701|gb|EFR14612.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
2362-75]
gi|312947736|gb|ADR28563.1| 23S rRNA methyltransferase J [Escherichia coli O83:H1 str. NRG
857C]
gi|313648578|gb|EFS13020.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
2a str. 2457T]
gi|315062485|gb|ADT76812.1| 23S rRNA methyltransferase [Escherichia coli W]
gi|315137765|dbj|BAJ44924.1| ribosomal RNA large subunit methyltransferase [Escherichia coli
DH1]
gi|315257104|gb|EFU37072.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 85-1]
gi|315288957|gb|EFU48355.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 110-3]
gi|315294886|gb|EFU54225.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 153-1]
gi|315297891|gb|EFU57161.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 16-3]
gi|315617262|gb|EFU97871.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3431]
gi|320174543|gb|EFW49679.1| 23S rRNA methyltransferase J [Shigella dysenteriae CDC 74-1112]
gi|320181454|gb|EFW56372.1| 23S rRNA methyltransferase J [Shigella boydii ATCC 9905]
gi|320186666|gb|EFW61390.1| 23S rRNA methyltransferase J [Shigella flexneri CDC 796-83]
gi|320189532|gb|EFW64191.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. EC1212]
gi|320194664|gb|EFW69294.1| 23S rRNA methyltransferase J [Escherichia coli WV_060327]
gi|320202093|gb|EFW76668.1| 23S rRNA methyltransferase J [Escherichia coli EC4100B]
gi|320640250|gb|EFX09822.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. G5101]
gi|320645547|gb|EFX14556.1| 23S rRNA methyltransferase J [Escherichia coli O157:H- str. 493-89]
gi|320650857|gb|EFX19314.1| 23S rRNA methyltransferase J [Escherichia coli O157:H- str. H 2687]
gi|320656238|gb|EFX24150.1| 23S rRNA methyltransferase J [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320661928|gb|EFX29336.1| 23S rRNA methyltransferase J [Escherichia coli O55:H7 str. USDA
5905]
gi|320666763|gb|EFX33742.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. LSU-61]
gi|323154393|gb|EFZ40594.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EPECa14]
gi|323162871|gb|EFZ48706.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
E128010]
gi|323165139|gb|EFZ50929.1| ribosomal RNA large subunit methyltransferase J [Shigella sonnei
53G]
gi|323173561|gb|EFZ59190.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
LT-68]
gi|323183133|gb|EFZ68531.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
OK1357]
gi|323189200|gb|EFZ74484.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
RN587/1]
gi|323376927|gb|ADX49195.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
KO11FL]
gi|323936127|gb|EGB32421.1| ribosomal RNA large methyltransferase J [Escherichia coli E1520]
gi|323941721|gb|EGB37900.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
E482]
gi|323946967|gb|EGB42983.1| ribosomal RNA large methyltransferase J [Escherichia coli H120]
gi|323951302|gb|EGB47177.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
H252]
gi|323957674|gb|EGB53388.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
H263]
gi|323961166|gb|EGB56780.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
H489]
gi|323966359|gb|EGB61793.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
M863]
gi|323970258|gb|EGB65529.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TA007]
gi|323979104|gb|EGB74182.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW10509]
gi|324008750|gb|EGB77969.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 57-2]
gi|324012132|gb|EGB81351.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 60-1]
gi|324018296|gb|EGB87515.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 117-3]
gi|324119544|gb|EGC13426.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
E1167]
gi|326337879|gb|EGD61713.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. 1125]
gi|326347449|gb|EGD71174.1| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. 1044]
gi|327251270|gb|EGE62959.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_7v]
gi|330909233|gb|EGH37747.1| cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Escherichia coli AA86]
gi|331037348|gb|EGI09572.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
H736]
gi|331042726|gb|EGI14868.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
M605]
gi|331048165|gb|EGI20242.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
M718]
gi|331054048|gb|EGI26077.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TA206]
gi|331058039|gb|EGI30021.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TA143]
gi|331062919|gb|EGI34833.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TA271]
gi|331073323|gb|EGI44646.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
H591]
gi|331078441|gb|EGI49647.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
H299]
gi|332086091|gb|EGI91253.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
5216-82]
gi|332086420|gb|EGI91567.1| ribosomal RNA large subunit methyltransferase J [Shigella
dysenteriae 155-74]
gi|332090681|gb|EGI95775.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
3594-74]
gi|332102342|gb|EGJ05688.1| 23S rRNA methyltransferase [Shigella sp. D9]
gi|332345135|gb|AEE58469.1| ribosomal RNA large subunit methyltransferase RrmJ [Escherichia
coli UMNK88]
gi|332752338|gb|EGJ82728.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
4343-70]
gi|332752864|gb|EGJ83249.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-671]
gi|332754691|gb|EGJ85057.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
2747-71]
gi|332765175|gb|EGJ95402.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
2930-71]
gi|332998821|gb|EGK18417.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
VA-6]
gi|332999257|gb|EGK18843.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-272]
gi|332999886|gb|EGK19469.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-218]
gi|333014527|gb|EGK33874.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-304]
gi|333014980|gb|EGK34324.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-227]
gi|333971293|gb|AEG38098.1| 23S ribosomal RNA methyltransferase J [Escherichia coli NA114]
gi|335574056|gb|EGM60394.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
J1713]
gi|338768655|gb|EGP23445.1| Ribosomal RNA large subunit methyltransferase E [Escherichia coli
PCN033]
gi|340732717|gb|EGR61853.1| 23S rRNA methyltransferase J [Escherichia coli O104:H4 str.
01-09591]
gi|340738283|gb|EGR72532.1| 23S rRNA methyltransferase J [Escherichia coli O104:H4 str.
LB226692]
gi|341919283|gb|EGT68895.1| rlmE [Escherichia coli O104:H4 str. C227-11]
gi|342362301|gb|EGU26422.1| 23S rRNA methyltransferase J [Escherichia coli XH140A]
gi|342929221|gb|EGU97943.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MS 79-10]
gi|344193068|gb|EGV47152.1| 23S rRNA methyltransferase J [Escherichia coli XH001]
gi|345333178|gb|EGW65630.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_C165-02]
gi|345336252|gb|EGW68689.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_B2F1]
gi|345348089|gb|EGW80387.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_94C]
gi|345349745|gb|EGW82022.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3030-1]
gi|345355546|gb|EGW87756.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_DG131-3]
gi|345360629|gb|EGW92798.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_EH250]
gi|345371034|gb|EGX03008.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_MHI813]
gi|345374468|gb|EGX06420.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_H.1.8]
gi|345385990|gb|EGX15827.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_S1191]
gi|345391559|gb|EGX21346.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TX1999]
gi|349739721|gb|AEQ14427.1| 23S rRNA methyltransferase [Escherichia coli O7:K1 str. CE10]
gi|354860542|gb|EHF20988.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. C236-11]
gi|354863860|gb|EHF24291.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. C227-11]
gi|354865774|gb|EHF26202.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 04-8351]
gi|354872198|gb|EHF32593.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 09-7901]
gi|354878541|gb|EHF38890.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-3677]
gi|354887084|gb|EHF47361.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4404]
gi|354890974|gb|EHF51210.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4522]
gi|354895389|gb|EHF55576.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4623]
gi|354906873|gb|EHF66944.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4632 C1]
gi|354909896|gb|EHF69926.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4632 C2]
gi|354911981|gb|EHF71983.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4632 C3]
gi|354914730|gb|EHF74712.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4632 C4]
gi|354922078|gb|EHF81996.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-4632 C5]
gi|355350345|gb|EHF99545.1| 23S rRNA methyltransferase J [Escherichia coli cloneA_i1]
gi|355421960|gb|AER86157.1| 23S rRNA methyltransferase J [Escherichia coli str. 'clone D i2']
gi|355426880|gb|AER91076.1| 23S rRNA methyltransferase J [Escherichia coli str. 'clone D i14']
gi|359333376|dbj|BAL39823.1| 23S rRNA methyltransferase [Escherichia coli str. K-12 substr.
MDS42]
gi|371594330|gb|EHN83198.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
H494]
gi|371601131|gb|EHN89899.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
TA124]
gi|371604935|gb|EHN93559.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
H397]
gi|371606333|gb|EHN94930.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
E101]
gi|371613092|gb|EHO01593.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
B093]
gi|373246335|gb|EHP65789.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
4_1_47FAA]
gi|374360577|gb|AEZ42284.1| 23S rRNA methyltransferase J [Escherichia coli O55:H7 str. RM12579]
gi|375323097|gb|EHS68820.1| 23S rRNA methyltransferase J [Escherichia coli O157:H43 str. T22]
gi|377840851|gb|EHU05921.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC1A]
gi|377841416|gb|EHU06482.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC1C]
gi|377844585|gb|EHU09621.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC1B]
gi|377854698|gb|EHU19575.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC1D]
gi|377857898|gb|EHU22746.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC1E]
gi|377861365|gb|EHU26185.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC2A]
gi|377871831|gb|EHU36489.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC2B]
gi|377874569|gb|EHU39196.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC2C]
gi|377876826|gb|EHU41425.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC2D]
gi|377887140|gb|EHU51618.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC2E]
gi|377890985|gb|EHU55438.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC3A]
gi|377891802|gb|EHU56254.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC3B]
gi|377903620|gb|EHU67911.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC3C]
gi|377907803|gb|EHU72026.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC3D]
gi|377909674|gb|EHU73874.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC3E]
gi|377919157|gb|EHU83200.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC3F]
gi|377924488|gb|EHU88435.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC4A]
gi|377928750|gb|EHU92660.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC4B]
gi|377939127|gb|EHV02884.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC4D]
gi|377940026|gb|EHV03778.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC4C]
gi|377945932|gb|EHV09622.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC4E]
gi|377955134|gb|EHV18691.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC4F]
gi|377958535|gb|EHV22048.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC5A]
gi|377963404|gb|EHV26851.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC5B]
gi|377971630|gb|EHV34984.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC5C]
gi|377972840|gb|EHV36185.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC5D]
gi|377982866|gb|EHV46118.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC5E]
gi|377990397|gb|EHV53558.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC6B]
gi|377991784|gb|EHV54934.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC6A]
gi|377994611|gb|EHV57737.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC6C]
gi|378005254|gb|EHV68259.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC6D]
gi|378007949|gb|EHV70912.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC6E]
gi|378013807|gb|EHV76724.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC7A]
gi|378021871|gb|EHV84566.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC7C]
gi|378025951|gb|EHV88591.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC7D]
gi|378030827|gb|EHV93420.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC7B]
gi|378036244|gb|EHV98788.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC7E]
gi|378050828|gb|EHW13155.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC8C]
gi|378060161|gb|EHW22360.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC8D]
gi|378070370|gb|EHW32449.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC9A]
gi|378074976|gb|EHW37004.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC9B]
gi|378080750|gb|EHW42707.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC9C]
gi|378088243|gb|EHW50098.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC9D]
gi|378091525|gb|EHW53355.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC9E]
gi|378098100|gb|EHW59843.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC10A]
gi|378103374|gb|EHW65043.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC10B]
gi|378108134|gb|EHW69750.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC10C]
gi|378114265|gb|EHW75822.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC10D]
gi|378125808|gb|EHW87206.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC10E]
gi|378127037|gb|EHW88429.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC11A]
gi|378127227|gb|EHW88617.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC10F]
gi|378139372|gb|EHX00612.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC11B]
gi|378145926|gb|EHX07081.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC11D]
gi|378147885|gb|EHX09030.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC11C]
gi|378156227|gb|EHX17279.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC11E]
gi|378162573|gb|EHX23533.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC12B]
gi|378166573|gb|EHX27495.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC12A]
gi|378167608|gb|EHX28520.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC12C]
gi|378180055|gb|EHX40757.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC12D]
gi|378184170|gb|EHX44807.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC12E]
gi|378184877|gb|EHX45513.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC13A]
gi|378197210|gb|EHX57693.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC13C]
gi|378197770|gb|EHX58246.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC13B]
gi|378200728|gb|EHX61182.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC13D]
gi|378210554|gb|EHX70908.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC13E]
gi|378214466|gb|EHX74773.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC14A]
gi|378216761|gb|EHX77045.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC14B]
gi|378226150|gb|EHX86343.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC14C]
gi|378229391|gb|EHX89532.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC14D]
gi|378235589|gb|EHX95657.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC15A]
gi|378241371|gb|EHY01338.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC15B]
gi|378245974|gb|EHY05911.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC15C]
gi|378253438|gb|EHY13316.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC15D]
gi|378257691|gb|EHY17528.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
DEC15E]
gi|380346862|gb|EIA35152.1| 23S rRNA methyltransferase J [Escherichia coli SCI-07]
gi|383104613|gb|AFG42122.1| Ribosomal RNA large subunit methyltransferase J [Escherichia coli
P12b]
gi|383391380|gb|AFH16338.1| 23S rRNA methyltransferase J [Escherichia coli KO11FL]
gi|383406778|gb|AFH13021.1| 23S rRNA methyltransferase J [Escherichia coli W]
gi|383468482|gb|EID63503.1| 23S rRNA methyltransferase J [Shigella flexneri 5a str. M90T]
gi|383476168|gb|EID68115.1| 23S rRNA methyltransferase J [Escherichia coli W26]
gi|384380232|gb|EIE38098.1| 23S rRNA methyltransferase J [Escherichia coli J53]
gi|384471651|gb|EIE55723.1| 23S rRNA methyltransferase J [Escherichia coli AI27]
gi|385156563|gb|EIF18559.1| 23S rRNA methyltransferase J [Escherichia coli O32:H37 str. P4]
gi|385538131|gb|EIF84996.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
M919]
gi|385709853|gb|EIG46846.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
B799]
gi|385710173|gb|EIG47165.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
H730]
gi|386120660|gb|EIG69284.1| ribosomal RNA large subunit methyltransferase E [Escherichia sp.
4_1_40B]
gi|386139995|gb|EIG81150.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
1.2741]
gi|386147124|gb|EIG93569.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
97.0246]
gi|386152029|gb|EIH03318.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
5.0588]
gi|386157868|gb|EIH14206.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
97.0259]
gi|386163279|gb|EIH25075.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
1.2264]
gi|386165263|gb|EIH31783.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0497]
gi|386173628|gb|EIH45640.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0741]
gi|386176406|gb|EIH53885.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3.2608]
gi|386183581|gb|EIH66328.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
93.0624]
gi|386202354|gb|EII01345.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.154]
gi|386207879|gb|EII12384.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
5.0959]
gi|386210367|gb|EII20841.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
9.0111]
gi|386220558|gb|EII37022.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
4.0967]
gi|386230569|gb|EII57924.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3.3884]
gi|386236716|gb|EII68692.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
2.4168]
gi|386240994|gb|EII77913.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3.2303]
gi|386244817|gb|EII86547.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3003]
gi|386251008|gb|EII97175.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW07793]
gi|386254820|gb|EIJ04510.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
B41]
gi|386260733|gb|EIJ16207.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
900105 (10e)]
gi|386797821|gb|AFJ30855.1| 23S rRNA methyltransferase J [Escherichia coli Xuzhou21]
gi|388334069|gb|EIL00677.1| 23S rRNA methyltransferase J [Escherichia coli O103:H25 str.
CVM9340]
gi|388339183|gb|EIL05569.1| 23S rRNA methyltransferase J [Escherichia coli O111:H11 str.
CVM9534]
gi|388345569|gb|EIL11339.1| 23S rRNA methyltransferase J [Escherichia coli O103:H2 str.
CVM9450]
gi|388358350|gb|EIL22817.1| 23S rRNA methyltransferase J [Escherichia coli O111:H11 str.
CVM9545]
gi|388368846|gb|EIL32467.1| 23S rRNA methyltransferase J [Escherichia coli O26:H11 str.
CVM9942]
gi|388372705|gb|EIL36118.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
O26:H11 str. CVM10026]
gi|388389170|gb|EIL50706.1| 23S rRNA methyltransferase J [Escherichia coli KD1]
gi|388396000|gb|EIL57134.1| 23S rRNA methyltransferase J [Escherichia coli 541-15]
gi|388405440|gb|EIL65870.1| 23S rRNA methyltransferase J [Escherichia coli 576-1]
gi|388407054|gb|EIL67430.1| 23S rRNA methyltransferase J [Escherichia coli 541-1]
gi|388407734|gb|EIL68098.1| 23S rRNA methyltransferase J [Escherichia coli 75]
gi|388413535|gb|EIL73527.1| 23S rRNA methyltransferase J [Escherichia coli HM605]
gi|388422121|gb|EIL81710.1| 23S rRNA methyltransferase J [Escherichia coli CUMT8]
gi|390639039|gb|EIN18527.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK1996]
gi|390640555|gb|EIN20007.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FDA517]
gi|390640763|gb|EIN20208.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FDA505]
gi|390658294|gb|EIN36091.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK1985]
gi|390658385|gb|EIN36180.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
93-001]
gi|390661373|gb|EIN39031.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK1990]
gi|390675353|gb|EIN51504.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA3]
gi|390678676|gb|EIN54622.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA5]
gi|390682290|gb|EIN58060.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA9]
gi|390693930|gb|EIN68543.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA10]
gi|390698297|gb|EIN72682.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA14]
gi|390699016|gb|EIN73384.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA15]
gi|390712871|gb|EIN85815.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA22]
gi|390719670|gb|EIN92388.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA25]
gi|390721370|gb|EIN94065.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA24]
gi|390725543|gb|EIN98045.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA28]
gi|390739028|gb|EIO10221.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA31]
gi|390739720|gb|EIO10881.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA32]
gi|390743159|gb|EIO14144.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA33]
gi|390756820|gb|EIO26321.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA40]
gi|390763751|gb|EIO32978.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA39]
gi|390764934|gb|EIO34124.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA41]
gi|390766538|gb|EIO35657.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA42]
gi|390780236|gb|EIO47936.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW06591]
gi|390787415|gb|EIO54900.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW07945]
gi|390788937|gb|EIO56402.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW10246]
gi|390794756|gb|EIO62046.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW11039]
gi|390802521|gb|EIO69557.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW09098]
gi|390805772|gb|EIO72708.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW09109]
gi|390814682|gb|EIO81246.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW10119]
gi|390823912|gb|EIO89927.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4203]
gi|390825882|gb|EIO91770.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW09195]
gi|390828725|gb|EIO94362.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4196]
gi|390843288|gb|EIP07094.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW14313]
gi|390844021|gb|EIP07783.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW14301]
gi|390848864|gb|EIP12317.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4421]
gi|390859177|gb|EIP21531.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4422]
gi|390863736|gb|EIP25867.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4013]
gi|390868401|gb|EIP30152.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4402]
gi|390876525|gb|EIP37510.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4439]
gi|390881968|gb|EIP42520.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4436]
gi|390891702|gb|EIP51324.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4437]
gi|390893636|gb|EIP53176.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC4448]
gi|390898936|gb|EIP58197.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1738]
gi|390907362|gb|EIP66231.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1734]
gi|390917193|gb|EIP75626.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1863]
gi|390918197|gb|EIP76608.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1845]
gi|391246556|gb|EIQ05817.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
2850-71]
gi|391247617|gb|EIQ06864.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-1770]
gi|391248100|gb|EIQ07344.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
CCH060]
gi|391259364|gb|EIQ18438.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-315]
gi|391263845|gb|EIQ22845.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
K-404]
gi|391267319|gb|EIQ26256.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
965-58]
gi|391274971|gb|EIQ33770.1| ribosomal RNA large subunit methyltransferase J [Shigella boydii
4444-74]
gi|391278608|gb|EIQ37309.1| ribosomal RNA large subunit methyltransferase J [Shigella sonnei
3226-85]
gi|391282406|gb|EIQ41038.1| ribosomal RNA large subunit methyltransferase J [Shigella sonnei
3233-85]
gi|391292711|gb|EIQ51032.1| ribosomal RNA large subunit methyltransferase J [Shigella sonnei
4822-66]
gi|391298810|gb|EIQ56801.1| ribosomal RNA large subunit methyltransferase J [Shigella
dysenteriae 225-75]
gi|391303223|gb|EIQ61064.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EPECa12]
gi|391310973|gb|EIQ68623.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EPEC C342-62]
gi|391311581|gb|EIQ69216.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
1235-66]
gi|394380410|gb|EJE58154.1| 23S rRNA methyltransferase J [Escherichia coli O26:H11 str.
CVM10224]
gi|394400996|gb|EJE76857.1| 23S rRNA methyltransferase J [Escherichia coli O26:H11 str.
CVM10021]
gi|394417853|gb|EJE91565.1| 23S rRNA methyltransferase J [Escherichia coli O111:H11 str.
CVM9553]
gi|394420584|gb|EJE94106.1| 23S rRNA methyltransferase J [Escherichia coli O26:H11 str.
CVM9952]
gi|394423893|gb|EJE97104.1| 23S rRNA methyltransferase J [Escherichia coli O111:H11 str.
CVM9455]
gi|394432983|gb|EJF05046.1| 23S rRNA methyltransferase J [Escherichia coli O26:H11 str.
CVM10030]
gi|397783913|gb|EJK94770.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
STEC_O31]
gi|397895283|gb|EJL11715.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
6603-63]
gi|397896330|gb|EJL12749.1| ribosomal RNA large subunit methyltransferase J [Shigella sonnei
str. Moseley]
gi|404336561|gb|EJZ63021.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
1485-80]
gi|406775913|gb|AFS55337.1| 23S rRNA methyltransferase J [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407052487|gb|AFS72538.1| 23S rRNA methyltransferase J [Escherichia coli O104:H4 str.
2011C-3493]
gi|407067188|gb|AFS88235.1| 23S rRNA methyltransferase J [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408063111|gb|EKG97610.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA7]
gi|408065325|gb|EKG99800.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK920]
gi|408067690|gb|EKH02120.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA34]
gi|408077584|gb|EKH11783.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FDA506]
gi|408081044|gb|EKH15078.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FDA507]
gi|408089613|gb|EKH22917.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FDA504]
gi|408095820|gb|EKH28784.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK1999]
gi|408102314|gb|EKH34729.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK1997]
gi|408106727|gb|EKH38820.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
NE1487]
gi|408113492|gb|EKH45082.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
NE037]
gi|408119585|gb|EKH50645.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK2001]
gi|408125801|gb|EKH56391.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA4]
gi|408135764|gb|EKH65534.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA23]
gi|408138379|gb|EKH68048.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA49]
gi|408144813|gb|EKH74027.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA45]
gi|408153113|gb|EKH81517.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TT12B]
gi|408158217|gb|EKH86341.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
MA6]
gi|408162198|gb|EKH90113.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
5905]
gi|408171473|gb|EKH98588.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
CB7326]
gi|408178237|gb|EKI04958.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC96038]
gi|408181519|gb|EKI08074.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
5412]
gi|408191026|gb|EKI16646.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW15901]
gi|408199061|gb|EKI24270.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
ARS4.2123]
gi|408199762|gb|EKI24952.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
TW00353]
gi|408210945|gb|EKI35501.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3006]
gi|408211523|gb|EKI36069.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
07798]
gi|408214962|gb|EKI39368.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA38]
gi|408225164|gb|EKI48853.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1735]
gi|408226348|gb|EKI49995.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
N1]
gi|408236244|gb|EKI59148.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1736]
gi|408240072|gb|EKI62785.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1737]
gi|408244586|gb|EKI67006.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1846]
gi|408253341|gb|EKI74939.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1847]
gi|408257249|gb|EKI78572.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1848]
gi|408263808|gb|EKI84636.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1849]
gi|408272395|gb|EKI92485.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1850]
gi|408275394|gb|EKI95356.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1856]
gi|408283664|gb|EKJ02812.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1862]
gi|408289655|gb|EKJ08411.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1864]
gi|408294595|gb|EKJ12977.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1865]
gi|408305531|gb|EKJ22924.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1868]
gi|408306071|gb|EKJ23448.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1866]
gi|408316950|gb|EKJ33200.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1869]
gi|408322550|gb|EKJ38529.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
EC1870]
gi|408324807|gb|EKJ40728.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
NE098]
gi|408334995|gb|EKJ49860.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
FRIK523]
gi|408341785|gb|EKJ56223.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
0.1288]
gi|408344355|gb|EKJ58725.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
0.1304]
gi|408459930|gb|EKJ83710.1| 23S rRNA methyltransferase J [Escherichia coli AD30]
gi|408547074|gb|EKK24473.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
5.2239]
gi|408547218|gb|EKK24616.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3.4870]
gi|408548634|gb|EKK26016.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
6.0172]
gi|408565291|gb|EKK41378.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
8.0566]
gi|408565600|gb|EKK41683.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
8.0586]
gi|408566621|gb|EKK42688.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
8.0569]
gi|408577380|gb|EKK52955.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
10.0833]
gi|408579648|gb|EKK55100.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
8.2524]
gi|408589527|gb|EKK64037.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
10.0869]
gi|408595052|gb|EKK69320.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
88.0221]
gi|408599749|gb|EKK73638.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
8.0416]
gi|408610455|gb|EKK83826.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
10.0821]
gi|412964562|emb|CCK48491.1| cell division protein [Escherichia coli chi7122]
gi|412971150|emb|CCJ45805.1| cell division protein [Escherichia coli]
gi|421944526|gb|EKU01778.1| 23S rRNA methyltransferase J [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421947489|gb|EKU04561.1| 23S rRNA methyltransferase J [Escherichia coli O26:H11 str.
CFSAN001629]
gi|427202543|gb|EKV72867.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
88.1042]
gi|427203651|gb|EKV73950.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
89.0511]
gi|427206454|gb|EKV76666.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
88.1467]
gi|427218858|gb|EKV87838.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
90.0091]
gi|427222469|gb|EKV91252.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
90.2281]
gi|427225619|gb|EKV94244.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
90.0039]
gi|427239659|gb|EKW07137.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
93.0056]
gi|427240046|gb|EKW07513.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
93.0055]
gi|427243916|gb|EKW11264.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
94.0618]
gi|427258382|gb|EKW24472.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
95.0183]
gi|427259275|gb|EKW25334.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
95.0943]
gi|427261897|gb|EKW27813.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
95.1288]
gi|427274542|gb|EKW39190.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0428]
gi|427277200|gb|EKW41742.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0427]
gi|427281527|gb|EKW45837.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0939]
gi|427289954|gb|EKW53453.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0932]
gi|427297024|gb|EKW60068.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0107]
gi|427298793|gb|EKW61787.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
97.0003]
gi|427309725|gb|EKW72022.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
97.1742]
gi|427312957|gb|EKW75093.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
97.0007]
gi|427317282|gb|EKW79188.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0672]
gi|427326135|gb|EKW87561.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0678]
gi|427327508|gb|EKW88895.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0713]
gi|429251932|gb|EKY36494.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
96.0109]
gi|429253388|gb|EKY37876.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
97.0010]
gi|429346589|gb|EKY83368.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02092]
gi|429356568|gb|EKY93243.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429357443|gb|EKY94116.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02030]
gi|429372735|gb|EKZ09284.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02093]
gi|429374676|gb|EKZ11215.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02281]
gi|429378358|gb|EKZ14872.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02318]
gi|429388538|gb|EKZ24963.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-02913]
gi|429391307|gb|EKZ27711.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-03439]
gi|429392316|gb|EKZ28717.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-03943]
gi|429402805|gb|EKZ39095.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. 11-04080]
gi|429404001|gb|EKZ40281.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-9990]
gi|429407664|gb|EKZ43915.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-9450]
gi|429415111|gb|EKZ51281.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-4984]
gi|429418565|gb|EKZ54708.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-4986]
gi|429424832|gb|EKZ60930.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-4987]
gi|429429022|gb|EKZ65093.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-4988]
gi|429433685|gb|EKZ69716.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-5603]
gi|429435229|gb|EKZ71248.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-6006]
gi|429440971|gb|EKZ76945.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-5604]
gi|429445909|gb|EKZ81848.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429455674|gb|EKZ91529.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec12-0466]
gi|429459389|gb|EKZ95208.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
O104:H4 str. Ec11-9941]
gi|430873413|gb|ELB96987.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE2]
gi|430874672|gb|ELB98228.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE4]
gi|430884192|gb|ELC07163.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE5]
gi|430891975|gb|ELC14496.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE10]
gi|430893939|gb|ELC16241.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE11]
gi|430896479|gb|ELC18714.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE12]
gi|430904410|gb|ELC26119.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE16]
gi|430905969|gb|ELC27577.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE15]
gi|430913738|gb|ELC34859.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE25]
gi|430915449|gb|ELC36528.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE21]
gi|430923946|gb|ELC44679.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE26]
gi|430928259|gb|ELC48810.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE28]
gi|430933933|gb|ELC54324.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE39]
gi|430937094|gb|ELC57356.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE44]
gi|430942902|gb|ELC63033.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE178]
gi|430951581|gb|ELC70801.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE187]
gi|430952482|gb|ELC71546.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE181]
gi|430961219|gb|ELC79266.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE188]
gi|430964874|gb|ELC82320.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE189]
gi|430971761|gb|ELC88770.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE191]
gi|430977853|gb|ELC94676.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE193]
gi|430980519|gb|ELC97279.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE201]
gi|430986455|gb|ELD03026.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE204]
gi|430996316|gb|ELD12602.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE206]
gi|431002746|gb|ELD18253.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE208]
gi|431005015|gb|ELD20224.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE210]
gi|431014634|gb|ELD28342.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE212]
gi|431019012|gb|ELD32442.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE213]
gi|431021862|gb|ELD35183.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE214]
gi|431026659|gb|ELD39730.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE216]
gi|431036200|gb|ELD47576.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE220]
gi|431039183|gb|ELD50069.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE224]
gi|431048618|gb|ELD58594.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE228]
gi|431049164|gb|ELD59128.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE230]
gi|431058606|gb|ELD67999.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE234]
gi|431060996|gb|ELD70316.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE233]
gi|431067396|gb|ELD76001.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE235]
gi|431072263|gb|ELD80015.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE236]
gi|431078017|gb|ELD85076.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE237]
gi|431082600|gb|ELD88914.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE47]
gi|431089167|gb|ELD94991.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE49]
gi|431091075|gb|ELD96825.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE51]
gi|431098303|gb|ELE03626.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE53]
gi|431105963|gb|ELE10297.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE55]
gi|431113282|gb|ELE16952.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE56]
gi|431118922|gb|ELE21941.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE58]
gi|431126782|gb|ELE29129.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE60]
gi|431129302|gb|ELE31478.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE62]
gi|431136320|gb|ELE38189.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE67]
gi|431138316|gb|ELE40152.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE66]
gi|431147373|gb|ELE48796.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE72]
gi|431152184|gb|ELE53142.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE75]
gi|431157152|gb|ELE57806.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE76]
gi|431161144|gb|ELE61629.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE77]
gi|431168186|gb|ELE68440.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE80]
gi|431169129|gb|ELE69358.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE81]
gi|431178484|gb|ELE78393.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE83]
gi|431179205|gb|ELE79112.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE86]
gi|431188506|gb|ELE87948.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE87]
gi|431188878|gb|ELE88319.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE93]
gi|431197469|gb|ELE96318.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE111]
gi|431198427|gb|ELE97250.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE116]
gi|431208506|gb|ELF06719.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE119]
gi|431211855|gb|ELF09809.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE142]
gi|431218077|gb|ELF15561.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE143]
gi|431219987|gb|ELF17375.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE156]
gi|431232127|gb|ELF27803.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE162]
gi|431236504|gb|ELF31710.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE161]
gi|431241182|gb|ELF35629.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE169]
gi|431241704|gb|ELF36140.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE171]
gi|431253890|gb|ELF47368.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE8]
gi|431255957|gb|ELF49035.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE6]
gi|431261137|gb|ELF53228.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE9]
gi|431263585|gb|ELF55571.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE17]
gi|431271830|gb|ELF62949.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE18]
gi|431272845|gb|ELF63944.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE45]
gi|431280128|gb|ELF71057.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE42]
gi|431282079|gb|ELF72977.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE23]
gi|431290276|gb|ELF81001.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE43]
gi|431294830|gb|ELF85009.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE29]
gi|431300389|gb|ELF89942.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE22]
gi|431306330|gb|ELF94643.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE46]
gi|431308123|gb|ELF96411.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE48]
gi|431316429|gb|ELG04239.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE54]
gi|431322716|gb|ELG10301.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE50]
gi|431325437|gb|ELG12825.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE59]
gi|431328309|gb|ELG15629.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE63]
gi|431336187|gb|ELG23316.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE65]
gi|431338474|gb|ELG25561.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE78]
gi|431346694|gb|ELG33598.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE84]
gi|431350059|gb|ELG36887.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE79]
gi|431353883|gb|ELG40636.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE91]
gi|431360651|gb|ELG47253.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE101]
gi|431361954|gb|ELG48533.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE115]
gi|431366411|gb|ELG52909.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE118]
gi|431378602|gb|ELG63593.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE123]
gi|431382888|gb|ELG67031.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE136]
gi|431383670|gb|ELG67794.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE135]
gi|431387620|gb|ELG71444.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE140]
gi|431393738|gb|ELG77302.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE141]
gi|431398738|gb|ELG82158.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE144]
gi|431402848|gb|ELG86153.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE146]
gi|431409612|gb|ELG92787.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE147]
gi|431414940|gb|ELG97491.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE158]
gi|431418355|gb|ELH00759.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE154]
gi|431424182|gb|ELH06279.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE192]
gi|431429276|gb|ELH11206.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE194]
gi|431431681|gb|ELH13456.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE165]
gi|431436840|gb|ELH18354.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE190]
gi|431437223|gb|ELH18736.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE173]
gi|431442122|gb|ELH23229.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE175]
gi|431451380|gb|ELH31856.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE184]
gi|431455877|gb|ELH36232.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE196]
gi|431461477|gb|ELH41745.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE183]
gi|431465410|gb|ELH45520.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE197]
gi|431468957|gb|ELH48890.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE203]
gi|431472213|gb|ELH52105.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE202]
gi|431479885|gb|ELH59618.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE207]
gi|431487453|gb|ELH67098.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE209]
gi|431489878|gb|ELH69503.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE211]
gi|431492554|gb|ELH72155.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE217]
gi|431496289|gb|ELH75873.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE215]
gi|431503742|gb|ELH82477.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE218]
gi|431505860|gb|ELH84465.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE223]
gi|431511458|gb|ELH89590.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE227]
gi|431522413|gb|ELH99648.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE229]
gi|431527375|gb|ELI04091.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE104]
gi|431528648|gb|ELI05355.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE105]
gi|431532448|gb|ELI09004.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE106]
gi|431541778|gb|ELI17217.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE109]
gi|431547811|gb|ELI22106.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE112]
gi|431549427|gb|ELI23508.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE113]
gi|431554468|gb|ELI28349.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE117]
gi|431563004|gb|ELI36247.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE120]
gi|431566994|gb|ELI40009.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE124]
gi|431567695|gb|ELI40688.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE122]
gi|431579334|gb|ELI51918.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE125]
gi|431580555|gb|ELI53114.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE128]
gi|431594574|gb|ELI64854.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE131]
gi|431598647|gb|ELI68435.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE133]
gi|431602743|gb|ELI72173.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE137]
gi|431608217|gb|ELI77565.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE138]
gi|431613576|gb|ELI82772.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE139]
gi|431617050|gb|ELI86072.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE145]
gi|431625033|gb|ELI93627.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE148]
gi|431626287|gb|ELI94839.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE150]
gi|431632261|gb|ELJ00564.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE153]
gi|431641624|gb|ELJ09359.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE160]
gi|431644477|gb|ELJ12139.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE163]
gi|431654449|gb|ELJ21504.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE166]
gi|431657191|gb|ELJ24158.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE167]
gi|431658998|gb|ELJ25905.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE168]
gi|431668171|gb|ELJ34703.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE174]
gi|431671469|gb|ELJ37750.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE176]
gi|431675075|gb|ELJ41221.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE177]
gi|431684934|gb|ELJ50539.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE179]
gi|431686424|gb|ELJ51990.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE180]
gi|431689841|gb|ELJ55336.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE232]
gi|431698558|gb|ELJ63585.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE82]
gi|431703155|gb|ELJ67844.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE88]
gi|431713931|gb|ELJ78139.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE90]
gi|431717323|gb|ELJ81422.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE95]
gi|431718463|gb|ELJ82537.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE94]
gi|431728662|gb|ELJ92335.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE97]
gi|431732701|gb|ELJ96151.1| ribosomal RNA large subunit methyltransferase E [Escherichia coli
KTE99]
gi|432346195|gb|ELL40685.1| 23S rRNA methyltransferase J [Escherichia coli J96]
gi|441607166|emb|CCP96407.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441654406|emb|CCQ00955.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|441713865|emb|CCQ06192.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Escherichia coli Nissle 1917]
gi|443423760|gb|AGC88664.1| 23S rRNA methyltransferase J [Escherichia coli APEC O78]
gi|444536139|gb|ELV16171.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0814]
gi|444537890|gb|ELV17798.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
09BKT078844]
gi|444546317|gb|ELV25070.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0815]
gi|444555773|gb|ELV33217.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0839]
gi|444556097|gb|ELV33528.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0816]
gi|444561146|gb|ELV38278.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0848]
gi|444570354|gb|ELV46885.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.1753]
gi|444574267|gb|ELV50585.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.1775]
gi|444590781|gb|ELV66080.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA11]
gi|444591015|gb|ELV66312.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
ATCC 700728]
gi|444591834|gb|ELV67096.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.1805]
gi|444604599|gb|ELV79264.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA13]
gi|444605646|gb|ELV80287.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA19]
gi|444613788|gb|ELV88038.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA2]
gi|444621465|gb|ELV95441.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA47]
gi|444622063|gb|ELV96028.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA48]
gi|444628294|gb|ELW02038.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA8]
gi|444636341|gb|ELW09742.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
7.1982]
gi|444638837|gb|ELW12162.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.1781]
gi|444643347|gb|ELW16505.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.1762]
gi|444652806|gb|ELW25555.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
PA35]
gi|444658137|gb|ELW30599.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
3.4880]
gi|444661246|gb|ELW33573.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
95.0083]
gi|444668278|gb|ELW40300.1| ribosomal RNA large subunit methyltransferase J [Escherichia coli
99.0670]
gi|449314707|gb|EMD04869.1| 23S rRNA methyltransferase J [Escherichia coli O08]
gi|449316005|gb|EMD06130.1| 23S rRNA methyltransferase J [Escherichia coli S17]
gi|449317790|gb|EMD07874.1| 23S rRNA methyltransferase J [Escherichia coli SEPT362]
Length = 209
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 25/222 (11%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG
Sbjct: 4 KKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPG 63
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT--- 130
WSQ V + KG +++ D LP+ PI G DF Q D +D LV
Sbjct: 64 GWSQYVVTQIGG--------KGRIIACDLLPMDPIVG------VDFLQGDFRDELVMKAL 109
Query: 131 --ILKDDKLDVVLSDMAPNATGMREMD---HDLITQLAIAVIRFAVTYSKPGADCLIKIW 185
+ D K+ VV+SDMAPN +G +D + +LA+ + R + PG ++K++
Sbjct: 110 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA---PGGSFVVKVF 166
Query: 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
G + I +++VK+ KP SSR+ S E++++ G K
Sbjct: 167 QGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK 208
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,675,799,154
Number of Sequences: 23463169
Number of extensions: 139991218
Number of successful extensions: 389218
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2641
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 383116
Number of HSP's gapped (non-prelim): 3062
length of query: 229
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 91
effective length of database: 9,121,278,045
effective search space: 830036302095
effective search space used: 830036302095
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 74 (33.1 bits)