BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1489
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VDT6|RRMJ1_DROME Putative ribosomal RNA methyltransferase CG11447 OS=Drosophila
melanogaster GN=CG11447 PE=2 SV=1
Length = 250
Score = 237 bits (604), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 114/215 (53%), Positives = 146/215 (67%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS WL RQ ADPYV+KA+ NYRCRSAFKLLEID K LRPG VL+CGAAPG
Sbjct: 32 KGRSKSSQEWLTRQLADPYVEKARMMNYRCRSAFKLLEIDDKYGILRPGDTVLECGAAPG 91
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
SW+QVAV+ N++G + P+G V S+D L + + GA + DFT Q RL L+
Sbjct: 92 SWTQVAVERTNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSSLAQKRLREALQ 151
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K++ VLSDMAPNATG+R +D + IT L V+RFA+ S P A ++K+WD + P+L
Sbjct: 152 DRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVVKVWDNGDVPKL 211
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
E + RFY +VK +KP +SR SAE FL+ R FKG
Sbjct: 212 ERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFKG 246
>sp|Q9CPY0|RRMJ2_MOUSE Putative ribosomal RNA methyltransferase 2 OS=Mus musculus GN=Ftsj2
PE=2 SV=1
Length = 246
Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 143/215 (66%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + HLWL R DP+V+ AK E+YRCRSAFKLLE++ K + LRPGL+VLDCGAAPG
Sbjct: 25 RGRTGAEHLWLTRHLKDPFVKAAKVESYRCRSAFKLLEMNEKHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G DS P G VL VD L I+P+ GA L D T P +++ +L
Sbjct: 85 AWSQVAVQRVNATGADSSSPVGFVLGVDLLHIFPLAGATFLCPADVTDPRTFQKILELLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG+R++DHD + L + ++ AV PG L K W G L
Sbjct: 145 SRRADVILSDMAPNATGIRDLDHDKLISLCLTLVDMAVDILHPGGTLLCKTWAGSKSHLL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
++ +T+ + +++KP +SR S+E++LL ++G
Sbjct: 205 QKRLTQEFQSTRVVKPEASRKESSEVYLLATQYRG 239
>sp|Q9UI43|RRMJ2_HUMAN Putative ribosomal RNA methyltransferase 2 OS=Homo sapiens GN=FTSJ2
PE=1 SV=1
Length = 246
Score = 215 bits (548), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 139/216 (64%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
K + + HLWL R DP+V+ AK E+YRCRSAFKLLE++ + + LRPGL+VLDCGAAPG
Sbjct: 25 KNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPG 84
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
+WSQVAV+ VN+ G D P G VL VD L I+P++GA L D T P R++ +L
Sbjct: 85 AWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFLCPADVTDPRTSQRILEVLP 144
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DV+LSDMAPNATG R++DHD + L + ++ +PG L K W G +L
Sbjct: 145 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRL 204
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +T + V+I+KP +SR S+E++ L + G+
Sbjct: 205 QRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 240
>sp|A7IDJ5|RLME_XANP2 Ribosomal RNA large subunit methyltransferase E OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=rlmE PE=3
SV=1
Length = 254
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 134/216 (62%), Gaps = 7/216 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV +AK+E +R R+AFKL+E+D K + L+ G++++D GAAPG
Sbjct: 21 RGRTTSSQKWLQRQLNDPYVARAKREGWRSRAAFKLIEMDEKARLLKRGMRIVDLGAAPG 80
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA K + ++ G ++++D L I PI G V ++ DF PD +RL+ +L
Sbjct: 81 GWSQVAAKKIG-----LEEGLGKIVAIDLLEIEPIPG-VAFAQMDFLAPDAPERLIAML- 133
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ D+V+SDMA NATG ++ DH I L + FA PG L K+ G L
Sbjct: 134 GGQADLVMSDMAANATGHKKTDHLRIVGLVELAVEFARQVLAPGGTFLAKVIQGGMEATL 193
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++QV+ +KP +SR+ SAEL++L GF+G+
Sbjct: 194 LADLKRDFTQVRHVKPAASRADSAELYVLATGFRGE 229
>sp|A8II77|RLME_AZOC5 Ribosomal RNA large subunit methyltransferase E OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=rlmE PE=3 SV=1
Length = 240
Score = 166 bits (421), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 7/215 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+ + SS WL+RQ DPYV +AK+E +R R+AFKL+E+D K+ L+ G++++D GAAPG
Sbjct: 21 RTRSSSSQKWLQRQLNDPYVARAKREGWRSRAAFKLIEMDEKLHVLKRGMRIVDLGAAPG 80
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
WSQVA K + + + +G ++++D L + + G V+ ++ DF P +RL +L
Sbjct: 81 GWSQVAAKKIG-----AAEGQGKIVAIDLLEMDAVTG-VMFAQMDFLDPTAPERLFAML- 133
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D K D+V+SDMA N TG ++ DH I L FA PG + K++ G L
Sbjct: 134 DGKADLVMSDMAANTTGHKKTDHLKIIALVELAADFARQVLAPGGAFIAKVFQGGTEGTL 193
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ R Y+QV+ LKP +SR+ SAEL+L+ GF+G
Sbjct: 194 LADLKRDYAQVRHLKPAASRADSAELYLVATGFRG 228
>sp|Q164M8|RLME_ROSDO Ribosomal RNA large subunit methyltransferase E OS=Roseobacter
denitrificans (strain ATCC 33942 / OCh 114) GN=rlmE PE=3
SV=1
Length = 240
Score = 165 bits (417), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 132/219 (60%), Gaps = 2/219 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+A+K+LE+D + +FL PG +V+D G
Sbjct: 23 KTARGRKLSSTRWLQRQLNDPYVKRARSEGYRGRAAYKILELDDRFRFLVPGARVVDLGC 82
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAVK VN+ G + + +G VL VD + PI GA L + DF D D V
Sbjct: 83 APGGWCQVAVKRVNALGERTSKAQGSVLGVDLQEMEPIAGA-TLYQLDFMADDA-DEQVR 140
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
+ K DVV+SDMA +++G ++ DH I L A FA + G + K+ G
Sbjct: 141 VWLGGKADVVMSDMAASSSGHKQTDHLRIIALCEAAAYFAFDVLEEGGTFVAKVLAGGAE 200
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+L++ + + +++V +KPP+SR S+E F++ GF+ K
Sbjct: 201 GELQKLLKQRFAKVANIKPPASRQDSSEKFVVATGFRAK 239
>sp|A1B962|RLME_PARDP Ribosomal RNA large subunit methyltransferase E OS=Paracoccus
denitrificans (strain Pd 1222) GN=rlmE PE=3 SV=1
Length = 256
Score = 164 bits (414), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 130/216 (60%), Gaps = 2/216 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS LWL+RQ DPYV +AK+E YR R+A+K+LE+D K +FL PG +V+D G APG
Sbjct: 29 KGRKLSSTLWLERQLNDPYVARAKREGYRGRAAYKILELDDKYRFLVPGARVVDLGCAPG 88
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV VN+ G S + G VL VD + PI GA + + DF +++ L
Sbjct: 89 GWCQVAVARVNALGDKSGKKVGRVLGVDLQEVDPIPGAEI-HQLDFLSEGADEQVKAWL- 146
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVV+SDMA ++G + DH I L A + A +PG + K+ G ++
Sbjct: 147 GGRADVVMSDMAAASSGHKGTDHLRIVALVEAAAQLAFDVLEPGGTFVAKVLAGGAENEM 206
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + R + +V +KPP+SRS S+E F++ +GF+G+
Sbjct: 207 QAMLKRNFRKVANVKPPASRSDSSEKFVVAQGFRGR 242
>sp|A7HSA5|RLME_PARL1 Ribosomal RNA large subunit methyltransferase E OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=rlmE PE=3 SV=1
Length = 254
Score = 163 bits (413), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 127/216 (58%), Gaps = 4/216 (1%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SS WL+RQ DPYV AK+E YR R+AFKL EID K +FL+PG +V+D G APG W
Sbjct: 32 RSNSSTRWLQRQLNDPYVHAAKREGYRSRAAFKLAEIDDKYRFLKPGGRVVDLGCAPGGW 91
Query: 76 SQVAVKLVNSHGYD--SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
QVAV V + G D ++ G V+ +D L + P+ GA +L + DF D++ +L
Sbjct: 92 CQVAVARVKAEGGDAGAEGRHGRVIGLDYLEMDPVPGATIL-QLDFLSEGADDQVKELLA 150
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVVLSDMA TG ++ DH I L FA PG L K+ G +L
Sbjct: 151 GEA-DVVLSDMAAPTTGHKQTDHMRIMSLCEIAAHFATEVLAPGGTFLAKVLRGGTENEL 209
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + V+ +KP +SR+ SAE+++L +GFKG+
Sbjct: 210 LVLLKQHFKTVRHVKPKASRADSAEMYVLAQGFKGR 245
>sp|Q3J2Q5|RLME_RHOS4 Ribosomal RNA large subunit methyltransferase E OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=rlmE PE=3 SV=1
Length = 244
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 2/216 (0%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS LWL+RQ DPYV +AKKE YR R+A+K+LE+D K FL+PG +V+D G APG
Sbjct: 22 KGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDDKFGFLKPGGRVVDLGCAPG 81
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVAV+ VN+ G +P+G VL VD + PI GA + + DF D +++ L
Sbjct: 82 GWCQVAVERVNALGQKKNKPEGTVLGVDLQEVEPISGAEI-HQLDFLSDDADEKVKGWL- 139
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+ DVV+SDMA A+G + DH I L A FA + G + K+ G +L
Sbjct: 140 GGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEEGGTFVAKVLAGGAENEL 199
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + + +++V +KPP+SR+ S+E F++ GF+G+
Sbjct: 200 QALLKKNFTKVANVKPPASRADSSEKFVVAMGFRGR 235
>sp|A3PJK8|RLME_RHOS1 Ribosomal RNA large subunit methyltransferase E OS=Rhodobacter
sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rlmE PE=3
SV=1
Length = 244
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 132/218 (60%), Gaps = 2/218 (0%)
Query: 12 VPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAA 71
KG+ SS LWL+RQ DPYV +AKKE YR R+A+K+LE+D K FL+PG +V+D G A
Sbjct: 20 TAKGRKLSSTLWLERQLNDPYVIRAKKEGYRGRAAYKILELDDKFGFLKPGGRVVDLGCA 79
Query: 72 PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTI 131
PG W QVAV+ VN+ G +P+G VL VD + PI GA + + DF D +++
Sbjct: 80 PGGWCQVAVERVNALGQRKNKPEGTVLGVDLQEVEPISGAEI-HQLDFLSDDADEKVKGW 138
Query: 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191
L + DVV+SDMA A+G + DH I L A FA + G + K+ G
Sbjct: 139 L-GGRADVVMSDMAAAASGHKGTDHLRIIALCEAAAAFAFDVLEEGGTFVAKVLAGGAEN 197
Query: 192 QLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+L+ + + +++V +KPP+SR+ S+E F++ GF+G+
Sbjct: 198 ELQALLKKNFTKVANVKPPASRADSSEKFVVAMGFRGR 235
>sp|Q5LSB0|RLME_RUEPO Ribosomal RNA large subunit methyltransferase E OS=Ruegeria
pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
GN=rlmE PE=3 SV=1
Length = 233
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 130/218 (59%), Gaps = 2/218 (0%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ +G+ SS WL+RQ DPYV++A+ E YR R+AFK+LE+D K +FL PG +V+D G
Sbjct: 18 KTARGRKLSSTRWLQRQLNDPYVKRAQAEGYRGRAAFKILELDEKYRFLVPGARVVDLGC 77
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVT 130
APG W QVAVK VN+ G S + G VL +D + PI GA + + DF DR+
Sbjct: 78 APGGWCQVAVKRVNALGERSDKRVGRVLGIDLQEVEPIAGAEI-HQLDFLDDGADDRIKE 136
Query: 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190
L K DVV+SDMA +++G ++ DH I L A A + G + K+ G
Sbjct: 137 WL-GGKADVVMSDMAASSSGHKQTDHMRIIALCEAAAYLAFDVLEEGGTFVAKVLAGGAE 195
Query: 191 PQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
L++ + + +++V +KPP+SRS S+E F++ GF+G
Sbjct: 196 GDLQKLLKQKFTKVANVKPPASRSDSSEKFVVATGFRG 233
>sp|Q5FNQ1|RLME_GLUOX Ribosomal RNA large subunit methyltransferase E OS=Gluconobacter
oxydans (strain 621H) GN=rlmE PE=3 SV=1
Length = 268
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 124/214 (57%), Gaps = 12/214 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ + WL RQ DPYV A+K+ +R R+AFKL+EID + K + G +++D GAAPG
Sbjct: 56 RGRTTAQQRWLNRQLNDPYVAAARKQGWRSRAAFKLIEIDDRFKLIGEGTRIIDLGAAPG 115
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QVAVK H V+ +D LP+ P+ GA ++ + DFT P++ DRL +L
Sbjct: 116 GWTQVAVKRGAKH----------VVGLDLLPVDPVAGAEII-EGDFTDPEMPDRLKDML- 163
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+V+SDMAPN TG DH I LA + FA G + K++ G + +
Sbjct: 164 GGPADLVMSDMAPNTTGHAATDHMRIMGLAEGALDFAFQVLAEGGSFIAKVFQGGSEKDM 223
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +S VK +KPP+SR S+EL+++ GF+
Sbjct: 224 LALMKTAFSSVKHVKPPASRKESSELYVIATGFR 257
>sp|A1URN3|RLME_BARBK Ribosomal RNA large subunit methyltransferase E OS=Bartonella
bacilliformis (strain ATCC 35685 / KC583) GN=rlmE PE=3
SV=1
Length = 239
Score = 160 bits (405), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 123/211 (58%), Gaps = 7/211 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV ++K + YR R+A+KL+EI+ + K L+ G K++D GAAPG W QV
Sbjct: 34 SSRRWLERHLNDPYVHQSKADGYRSRAAYKLIEINERYKILKKGQKIIDLGAAPGGWCQV 93
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A +LV S Y+ V+ +D L + P+ G +L + DF D L++ L K D
Sbjct: 94 AARLVESKDYNPS-----VVGIDYLHMEPLPGVAIL-EMDFFHEDAPQELISTL-GSKPD 146
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA TG R+ DH L A + F+++ KPG L K + G L ++
Sbjct: 147 VVLSDMAAPTTGHRQTDHLRTIALCEAAVHFSISVLKPGGHFLTKTFQGGAEGNLLATLK 206
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ + +V +KPP+SR+ S EL+LL FKGK
Sbjct: 207 QNFKKVHHVKPPASRAESVELYLLALQFKGK 237
>sp|Q11L51|RLME_MESSB Ribosomal RNA large subunit methyltransferase E OS=Mesorhizobium
sp. (strain BNC1) GN=rlmE PE=3 SV=1
Length = 235
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 122/216 (56%), Gaps = 7/216 (3%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G SS WL+R DPYV++A E R R+A+KL+EID K L PG+KV+D GAAPG
Sbjct: 22 RGLKSSSRRWLERHLNDPYVRRANSEGMRSRAAYKLIEIDDKHHILAPGMKVIDLGAAPG 81
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVA V S D +P V+ +D L + P+ GA VL + DF DRL+ +L
Sbjct: 82 GWCQVAAASVKS---DPAKPS--VVGIDYLEMDPVPGAAVL-QMDFLDDAAPDRLIEVLG 135
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
DVVLSDMA TG R DH QL A FA++ K G + L K + G +L
Sbjct: 136 GSP-DVVLSDMAAPTTGHRRTDHLRTMQLCEAAADFAISVLKTGGNFLAKTFQGGTEGEL 194
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R + V +KPP+SR S EL++L + FKG+
Sbjct: 195 LSLLKRNFRSVHHVKPPASRDESVELYILAKDFKGR 230
>sp|B3QFD2|RLME_RHOPT Ribosomal RNA large subunit methyltransferase E OS=Rhodopseudomonas
palustris (strain TIE-1) GN=rlmE PE=3 SV=1
Length = 237
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 120/210 (57%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ YR R+A+KL EID K + L+ G+ V+D GAAPG WSQV
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKSGMAVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + +G V+++D L + + G V ++ DF P +RL +L D
Sbjct: 82 AAKKVGAA-----DGRGKVVAIDLLEMGEVPG-VTFAQLDFLDPSAPERLREMLGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N TG R+ D I L FA KPG L K++ L +
Sbjct: 135 IVMSDMAANTTGHRKTDQLRIVGLVETAAMFASEVLKPGGTFLAKVFQSGADASLMTELK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R Y+ VK +KP +SR S+E +LL GF+G
Sbjct: 195 RDYASVKHVKPAASRKDSSERYLLATGFRG 224
>sp|Q6N7Q9|RLME_RHOPA Ribosomal RNA large subunit methyltransferase E OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=rlmE PE=3
SV=1
Length = 237
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 120/210 (57%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ YR R+A+KL EID K + L+ G+ V+D GAAPG WSQV
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKSGMAVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + +G V+++D L + + G V ++ DF P +RL +L D
Sbjct: 82 AAKKVGAA-----DGRGKVVAIDLLEMGEVPG-VTFAQLDFLDPSAPERLREMLGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA N TG R+ D I L FA KPG L K++ L +
Sbjct: 135 IVMSDMAANTTGHRKTDQLRIVGLVETAAMFASEVLKPGGTFLAKVFQSGADASLMTELK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R Y+ VK +KP +SR S+E +LL GF+G
Sbjct: 195 RDYASVKHVKPAASRKDSSERYLLATGFRG 224
>sp|Q07LH9|RLME_RHOP5 Ribosomal RNA large subunit methyltransferase E OS=Rhodopseudomonas
palustris (strain BisA53) GN=rlmE PE=3 SV=1
Length = 235
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 125/210 (59%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ YR R+A+KLLEID K FL+PG V+D GAAPG WSQ+
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLLEIDDKHHFLKPGASVVDLGAAPGGWSQI 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + + KG V+++D L + I G V ++ DF P ++L+ ++ ++D
Sbjct: 82 AAKRVG-----ATEGKGKVVAIDLLEMPEIVG-VTFAQLDFLSPAAPEKLLAMI-GGRVD 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG R+ D I L FA KPG + K++ L +
Sbjct: 135 VVMSDMAANTTGHRKTDQLRIVGLVEDAAAFACDVLKPGGTFVAKVFQSGADATLMTQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ VK LKP +SR S+E ++L GF+G
Sbjct: 195 RDFASVKHLKPQASRKDSSERYVLALGFRG 224
>sp|Q4KIG3|RLME_PSEF5 Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=rlmE PE=3
SV=1
Length = 209
Score = 158 bits (399), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 127/214 (59%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +SH WLK F DP+V+ A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 3 RSKTSHNWLKEHFNDPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFT+ + +++ + +
Sbjct: 63 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTEDAVLAQILEAVGNS 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
++D+V+SDMAPN +G+ +D L + A +PG D LIKI+ G + +
Sbjct: 114 EVDLVISDMAPNMSGLAAVDMPRAMFLCELALDLAGRVLRPGGDFLIKIFQGEGFDEYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
S+ + + +V++ KP SSR S E +LLGRGF+G+
Sbjct: 174 SVRQMFEKVQMRKPSSSRDRSREQYLLGRGFRGR 207
>sp|A4YSS3|RLME_BRASO Ribosomal RNA large subunit methyltransferase E OS=Bradyrhizobium
sp. (strain ORS278) GN=rlmE PE=3 SV=1
Length = 231
Score = 157 bits (398), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 130/227 (57%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV +AK++ YR R+ +KL+EID K L+P
Sbjct: 5 TTGRMHVQVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGYRSRATYKLIEIDDKYHMLKP 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A + V ++ KG V+++D L + I G V ++ DF
Sbjct: 65 GMTVVDLGAAPGGWSQIAARRVG-----AEAGKGKVVAIDLLEMGEIPG-VTFAQLDFHA 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
D ++L T++ + DVV+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 QDAPEKLRTMI-GGRADVVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + +L + R Y+ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKTFQSGADAELLAQLKRDYATVRHVKPAASRQDSSERYVLAMGFRG 224
>sp|C3MGQ4|RLME_RHISN Ribosomal RNA large subunit methyltransferase E OS=Rhizobium sp.
(strain NGR234) GN=rlmE PE=3 SV=1
Length = 245
Score = 157 bits (397), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 129/227 (56%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
+G KL ++V KGK SS WL+R DPYVQ+A+ E YR R+AFKLLEID K K L
Sbjct: 11 SGRKLGQKVKKGKLKASSRRWLERHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILAGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ NS D + V ++D L + PI G L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTNSTDADPR-----VAAIDFLEMDPIPGVRFL-QLDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+ ++L + D+VLSDMA TG R+ DH L FAV G L
Sbjct: 125 EAPEKLKEAIGGTP-DLVLSDMAAPTTGHRQTDHLRTMHLCEVAAHFAVDVLAKGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + +SQV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLNMLKQNFSQVIHVKPASSRTESVEMFLLAKGFKGR 230
>sp|A5EHP2|RLME_BRASB Ribosomal RNA large subunit methyltransferase E OS=Bradyrhizobium
sp. (strain BTAi1 / ATCC BAA-1182) GN=rlmE PE=3 SV=1
Length = 231
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 129/227 (56%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV +AK++ YR R+ +KL+EID K L+P
Sbjct: 5 TTGRMHVQVKTGGKRKLSSKLWLERQLNDPYVAQAKRDGYRSRATYKLIEIDDKYHLLKP 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A + V ++ KG V+++D L + + G V ++ DF
Sbjct: 65 GMTVVDLGAAPGGWSQIAARRVG-----AEAGKGKVIAIDLLEMGEVPG-VTFTQMDFHA 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
D ++L +L + DVV+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 QDAPEKLRAML-GGRADVVMSDMAANTTGHRKTDQLRIVGLVELAAHFAGEVLKPGGSFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + +L + R Y+ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKTFQSGADAELLAQLKRDYATVRHVKPAASRQDSSERYVLAMGFRG 224
>sp|Q2IV68|RLME_RHOP2 Ribosomal RNA large subunit methyltransferase E OS=Rhodopseudomonas
palustris (strain HaA2) GN=rlmE PE=3 SV=1
Length = 236
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 120/210 (57%), Gaps = 6/210 (2%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL RQ DPYV +AK++ YR R+A+KL EID K FL+ G V+D GAAPG WSQV
Sbjct: 22 SSKLWLDRQLNDPYVAQAKRDGYRSRAAYKLTEIDDKYHFLKSGQAVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K + S +G ++++D L + I G V ++ DF D+L +L D D
Sbjct: 82 AAKRIG-----SANGRGKLIAIDLLEMGEIPG-VTFAQLDFLDSAAPDKLREMLGGDGAD 135
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG R+ D I L + +FA KPG + K++ L +
Sbjct: 136 VVMSDMAGNTTGHRKTDQLRIVGLVESAAQFASEVLKPGGIFVAKVFQSGADATLMNQLK 195
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ VK +KP +SR S+E ++L GF+G
Sbjct: 196 RDFATVKHVKPAASRKDSSERYVLAMGFRG 225
>sp|B8GNX9|RLME_THISH Ribosomal RNA large subunit methyltransferase E OS=Thioalkalivibrio
sp. (strain HL-EbGR7) GN=rlmE PE=3 SV=1
Length = 207
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 121/212 (57%), Gaps = 9/212 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SSH WLK F D YV++A++E YR R+ +KL EI + + LR G+ V+D GAAPG W
Sbjct: 3 RSKSSHRWLKEHFDDEYVKRAQQEGYRSRAVYKLQEIQERDRLLRQGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
+Q A LV HG V++ D LP+ P+ G V + + DF + ++ +RL+ +L +
Sbjct: 63 TQYAAGLVGKHGR--------VVASDILPMDPLPG-VTIVEGDFREAEVLERLLAVLGEG 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
D+V+SDMAPN +GM +D LA A T KPG D L+K++ G +
Sbjct: 114 GADLVMSDMAPNMSGMDAVDQPRAMYLAELAAELARTVLKPGGDFLVKLFQGAEFDEYVR 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ Y +V I KP +SR S E++ + RG K
Sbjct: 174 MLRTEYDKVSIRKPKASRPRSREVYAVARGRK 205
>sp|Q0BT08|RLME_GRABC Ribosomal RNA large subunit methyltransferase E OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rlmE
PE=3 SV=1
Length = 230
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 130/227 (57%), Gaps = 16/227 (7%)
Query: 5 TGPKLKEV----PKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLR 60
TGP+ K V + + +S WL RQ DPYV AK + +R R+AFKL+E+D K +
Sbjct: 10 TGPRGKVVMLKTARKRSVASQRWLTRQLNDPYVAAAKAQGWRSRAAFKLIELDDKFGLIS 69
Query: 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFT 120
G +V+D GAAPG W+QVA+ K+ +V+ VD LP+ P+ GA ++ + DF
Sbjct: 70 KGSRVIDLGAAPGGWTQVAM----------KRGAAVVVGVDLLPVDPVPGATLI-QGDFN 118
Query: 121 QPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADC 180
D+ RL +++ K D+V+SDMAPN TG DH I L + FA PG
Sbjct: 119 DDDMPARLSSLM-GGKADLVMSDMAPNTTGHAATDHMRIIALTELALHFAFDALAPGGAF 177
Query: 181 LIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ K++ G + QL E + + ++ V+ KP SSR S+EL+++ +GF+
Sbjct: 178 VAKVFQGGSEKQLLEPMKQRFASVRHAKPASSRKESSELYVVAKGFR 224
>sp|Q92RT9|RLME_RHIME Ribosomal RNA large subunit methyltransferase E OS=Rhizobium
meliloti (strain 1021) GN=rlmE PE=3 SV=1
Length = 245
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 127/227 (55%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
+G KL ++V KGK SS W++R DPYVQ+A+ E YR R+AFKLLEID K K L
Sbjct: 11 SGRKLGQKVKKGKLKASSRRWIERHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILAGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ NS D + V ++D L + PI G L + DF P
Sbjct: 71 KRIIDLGAAPGSWSQIAAKVTNSTDADPR-----VAAIDFLEMDPIPGVRFL-QMDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+ + L + D+VLSDMA TG R+ DH L FAV G L
Sbjct: 125 EAPENLKQAIGGAP-DIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAKGFKGR 230
>sp|Q2W0P2|RLME_MAGSA Ribosomal RNA large subunit methyltransferase E OS=Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264) GN=rlmE PE=3
SV=1
Length = 244
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 124/212 (58%), Gaps = 9/212 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK+ YR R+AFK++++D + L+PGL+V+D GAAPG W+QV
Sbjct: 37 SSTLWLQRQLNDPYVHEAKRLGYRSRAAFKMIQLDERFHILKPGLRVVDLGAAPGGWTQV 96
Query: 79 AVKLVNSHGYDSKQPK--GLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDK 136
AV+ V + +PK G V+ +D L P+ GA+ L + DF D DRL L
Sbjct: 97 AVEKVG-----ALKPKGGGKVVGMDILEWDPLPGAITL-QGDFLADDAPDRLKEAL-GGP 149
Query: 137 LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES 196
DVVLSDMA TG DH I L + FA+ PG + K++ G L +
Sbjct: 150 ADVVLSDMAAPTTGHPSTDHLRIIGLVEVALHFALEVLTPGGTFVAKVFQGGTEKTLLDQ 209
Query: 197 ITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + ++ V+ KPP+SR SAE +++ GF+G
Sbjct: 210 LKKNFTTVRHAKPPASRQGSAETYVVATGFRG 241
>sp|Q138J5|RLME_RHOPS Ribosomal RNA large subunit methyltransferase E OS=Rhodopseudomonas
palustris (strain BisB5) GN=rlmE PE=3 SV=1
Length = 235
Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 121/210 (57%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ YR R+A+KLLEID K FL+ GL V D GAAPG WSQ+
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGYRSRAAYKLLEIDDKYHFLKSGLAVADLGAAPGGWSQI 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + +G V+++D L + I G V ++ DF DRL +L D
Sbjct: 82 AAKRVG-----APDGRGKVIAIDLLEMGEIPG-VTFAQLDFLDDAAPDRLREMLGGGA-D 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VV+SDMA N TG R+ D I L + +FA KPG + K++ L +
Sbjct: 135 VVMSDMAANTTGHRKTDQLRIVGLVESAAQFASEVLKPGGTFVAKVFQSGADATLMTQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R ++ VK +KP +SR S+E ++L GF+G
Sbjct: 195 RDFATVKHVKPAASRKDSSERYVLAMGFRG 224
>sp|B0VEE9|RLME_ACIBY Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
baumannii (strain AYE) GN=rlmE PE=3 SV=1
Length = 216
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 124/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D LP+ + L + DF + + ++L+ IL ++D
Sbjct: 73 AGKLVGS--------KGLVIASDILPMDALPDVTFL-QGDFREEAVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLVGQGRK 212
>sp|A3M851|RLME_ACIBT Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
baumannii (strain ATCC 17978 / NCDC KC 755) GN=rlmE PE=3
SV=2
Length = 216
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 124/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D LP+ + L + DF + + ++L+ IL ++D
Sbjct: 73 AGKLVGS--------KGLVIASDILPMDALPDVTFL-QGDFREEAVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLVGQGRK 212
>sp|B0VSM4|RLME_ACIBS Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
baumannii (strain SDF) GN=rlmE PE=3 SV=1
Length = 216
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 124/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D LP+ + L + DF + + ++L+ IL ++D
Sbjct: 73 AGKLVGS--------KGLVIASDILPMDALPDVTFL-QGDFREEAVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLVGQGRK 212
>sp|B2HXD3|RLME_ACIBC Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
baumannii (strain ACICU) GN=rlmE PE=3 SV=1
Length = 216
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 124/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D LP+ + L + DF + + ++L+ IL ++D
Sbjct: 73 AGKLVGS--------KGLVIASDILPMDALPDVTFL-QGDFREEAVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLVGQGRK 212
>sp|B7I636|RLME_ACIB5 Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
baumannii (strain AB0057) GN=rlmE PE=3 SV=1
Length = 216
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 124/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D LP+ + L + DF + + ++L+ IL ++D
Sbjct: 73 AGKLVGS--------KGLVIASDILPMDALPDVTFL-QGDFREEAVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLVGQGRK 212
>sp|B7GY18|RLME_ACIB3 Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
baumannii (strain AB307-0294) GN=rlmE PE=3 SV=1
Length = 216
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 124/209 (59%), Gaps = 9/209 (4%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS W++ DP+V+KA+KE YR R+A+KLLEI K K ++PG+ V+D GAAPGSWSQ+
Sbjct: 13 SSRAWMREHLDDPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQI 72
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A KLV S KGLV++ D LP+ + L + DF + + ++L+ IL ++D
Sbjct: 73 AGKLVGS--------KGLVIASDILPMDALPDVTFL-QGDFREEAVFEKLLNILNGRQVD 123
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMAPN +G R +D L + FA P ++K++ G + + +
Sbjct: 124 IVISDMAPNTSGNRAVDQPRQIYLCELALDFAQKVLGPNGQFVVKVFQGAGFDEFRKQVV 183
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFK 227
+ +K KP +SR+ S E+FL+G+G K
Sbjct: 184 DSFDVLKTAKPAASRARSKEVFLVGQGRK 212
>sp|B1J262|RLME_PSEPW Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
putida (strain W619) GN=rlmE PE=3 SV=1
Length = 208
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 123/213 (57%), Gaps = 9/213 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ SS WL+ F DP+V++A+K+ YR R+++KLLEI K + +RPG+ V+D GAAPG W
Sbjct: 4 RSKSSANWLREHFNDPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGW 63
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +L+ G + +L +D +P V + DFTQ ++ +++ + D
Sbjct: 64 SQVTSRLIGGQG---RLIASDILEMDSIP------DVTFIQGDFTQDEVLQQILDAVGDS 114
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G E+D L + A KPG D LIKI+ G +
Sbjct: 115 HVDLVISDMAPNMSGTPEVDMPRAMFLCELALDLATRVLKPGGDFLIKIFQGEGFDMYLK 174
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V++ KP SSR S E +LLG+GFKG
Sbjct: 175 DVRTKFDKVQMRKPSSSRDRSREQYLLGKGFKG 207
>sp|Q0AQH3|RLME_MARMM Ribosomal RNA large subunit methyltransferase E OS=Maricaulis maris
(strain MCS10) GN=rlmE PE=3 SV=1
Length = 279
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 122/215 (56%), Gaps = 12/215 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
+G+ SS WL+RQ DPYV+KA+ E YR R+A+KLL++D + K L+PG++V+D G+APG
Sbjct: 77 RGRKSSSTRWLQRQLNDPYVKKAQMEGYRSRAAYKLLQLDERFKLLKPGMRVVDLGSAPG 136
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W QVA+K S V+ +D L + I GA +L K DFT D LV
Sbjct: 137 GWVQVALKSGASE----------VVGIDLLEMEAIAGATLLEK-DFTDADAPS-LVKAEM 184
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D V+SD+AP TG + DH I LA FAV KPG + K++ G + L
Sbjct: 185 GGAADAVVSDLAPWTTGHKTTDHLRIVALAELAAHFAVETLKPGGFFIAKVFQGGSDSDL 244
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + +V+ KP +SRS SAE F++ GFKG
Sbjct: 245 LNFLKANFEKVRHFKPDASRSESAETFVVAMGFKG 279
>sp|Q3SJR5|RLME_THIDA Ribosomal RNA large subunit methyltransferase E OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=rlmE PE=3 SV=1
Length = 220
Score = 154 bits (388), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 10/216 (4%)
Query: 9 LKEVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDC 68
+ + PK + S W+ D YV+KA+++ +R R+A+KLLEIDS+ L PG+ V+D
Sbjct: 1 MAQKPK-RTKSGSAWMHEHVTDAYVKKAQQDGFRSRAAYKLLEIDSRDHLLHPGMTVVDL 59
Query: 69 GAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRL 128
GAAPGSW QVAV+ + G VL++D LP+ P+ G L + DFT PD L
Sbjct: 60 GAAPGSWCQVAVQKMKRQGR--------VLAIDLLPVAPLPGVEAL-QGDFTAPDTLAWL 110
Query: 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188
L+ ++D+VLSDMAPN +G+ D +L + FAV + KP L+K++ G
Sbjct: 111 ENTLQAARVDLVLSDMAPNMSGVMLRDQARHYELCELALDFAVNWLKPDGAFLVKVFQGS 170
Query: 189 NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGR 224
++ R + QV I KP +SR S+E++LLGR
Sbjct: 171 GFEDFRNAMRRAFDQVVIRKPDASRDRSSEVYLLGR 206
>sp|O62251|RRMJ2_CAEEL Putative ribosomal RNA methyltransferase F45G2.9 OS=Caenorhabditis
elegans GN=F45G2.9 PE=3 SV=1
Length = 214
Score = 154 bits (388), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 119/212 (56%), Gaps = 15/212 (7%)
Query: 21 HLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAV 80
H +++RQ D + KA++ NYR RSAFKL+EI+ K KFL+P V+D G APGSW QV V
Sbjct: 12 HKYIQRQSTDEFAVKAREHNYRARSAFKLIEINEKFKFLKPESTVIDIGCAPGSWLQVVV 71
Query: 81 KLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVV 140
+ K P G VD + PI GA +LS D T P ++ ++ L ++DVV
Sbjct: 72 Q---------KCPNGYASGVDLQNVLPIRGADILSLSDITDPAVKLKIREKLAHRQVDVV 122
Query: 141 LSDMAPNATGMREMDHDLITQLAIAVIRF-----AVTYSKPGADCLIKIWDGRNRPQLEE 195
LSDMAPN TG DH + +L +V R + K G L KIWDG R +
Sbjct: 123 LSDMAPNPTGDNATDHLRLIELCRSVFRLFSVENEIELVKNGV-YLCKIWDGSARAEFVR 181
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFK 227
++ +S VK +KP + R +SAEL+L R FK
Sbjct: 182 ELSDRFSTVKTVKPTACRDNSAELYLFCRNFK 213
>sp|Q3SQN7|RLME_NITWN Ribosomal RNA large subunit methyltransferase E OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=rlmE PE=3
SV=1
Length = 230
Score = 153 bits (387), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ +R R++FKL+E+D K +FL+PG+ V+D GAAPG WSQV
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGWRSRASFKLIEMDDKHRFLKPGMTVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K V + + KG V+++D L + I G V ++ DF D+L+ ++ D D
Sbjct: 82 AAKRVG-----AAEGKGRVIAIDLLEMPEIVG-VTFARLDFLDDSAPDKLLAMM-DGAAD 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
VVLSDMA N TG R+ D I L + F +PG + K++ L +
Sbjct: 135 VVLSDMAANTTGHRKTDQLRIVGLVESAAAFTSDVLRPGGTFIAKVFQSGADAGLLVQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R + V+ +KP +SR S+E +++ GF+G
Sbjct: 195 RDFQTVRHVKPAASRQDSSERYVMATGFRG 224
>sp|Q1QKB6|RLME_NITHX Ribosomal RNA large subunit methyltransferase E OS=Nitrobacter
hamburgensis (strain X14 / DSM 10229) GN=rlmE PE=3 SV=1
Length = 228
Score = 153 bits (387), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS LWL+RQ DPYV +AK++ +R R+A+KL+E+D K FL+PGL V+D GAAPG WSQV
Sbjct: 22 SSKLWLERQLNDPYVAQAKRDGWRSRAAYKLIEMDDKYHFLKPGLAVVDLGAAPGGWSQV 81
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A + V + KG V+++D L + I G V ++ DF D ++L+ ++ + D
Sbjct: 82 AARRVG-----AVDGKGKVVAIDLLEMPEIVG-VTFARLDFLDADAPEKLIAMM-EGGAD 134
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+VLSDMA N TG R+ D I L + FA +PG + K++ L +
Sbjct: 135 IVLSDMAANTTGHRKTDQLRIIGLVESAAAFAADVLRPGGTFIAKVFQSGADADLLVQLK 194
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
R + V+ +KP SSR S+E +++ GF+G
Sbjct: 195 RDFRTVRHVKPASSRQDSSERYVMATGFRG 224
>sp|Q89N72|RLME_BRAJA Ribosomal RNA large subunit methyltransferase E OS=Bradyrhizobium
japonicum (strain USDA 110) GN=rlmE PE=3 SV=1
Length = 228
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 124/227 (54%), Gaps = 9/227 (3%)
Query: 4 TTGPKLKEVPKG--KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRP 61
TTG +V G + SS LWL+RQ DPYV KAK YR R+AFKLLEID K + L+
Sbjct: 5 TTGRLHVQVKTGGKRKLSSKLWLERQLNDPYVAKAKAAGYRSRAAFKLLEIDDKFRLLKH 64
Query: 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQ 121
G+ V+D GAAPG WSQ+A K V S KG V+++D L + I G V ++ DF
Sbjct: 65 GMAVVDLGAAPGGWSQIAAKRVG-----SVDGKGKVVAIDLLEMPEIAG-VEFAQLDFMD 118
Query: 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181
D +L +L DVV+SDMA N TG R+ D I L FA KPG L
Sbjct: 119 NDAPAKLTAMLGGGA-DVVMSDMAANTTGHRKTDQLRIVGLIETAAAFACDVLKPGGTFL 177
Query: 182 IKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
K + L + R ++ V+ +KP +SR S+E ++L GF+G
Sbjct: 178 AKTFQSGADADLLAQLKRDFATVRHVKPAASRQDSSERYVLATGFRG 224
>sp|Q5GS59|RLME_WOLTR Ribosomal RNA large subunit methyltransferase E OS=Wolbachia sp.
subsp. Brugia malayi (strain TRS) GN=rlmE PE=3 SV=1
Length = 216
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 121/219 (55%), Gaps = 21/219 (9%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+ KG+ SS WL R D YVQK K++YR RSA+KL+EID+K K L+ G K++D GA
Sbjct: 9 KTAKGRKLSSTRWLHRHLNDQYVQKTNKDSYRSRSAYKLIEIDNKFKLLQAGQKIVDLGA 68
Query: 71 APGSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPIYPIDGAVVLSKCDFTQPDIQ--DR 127
+PG WSQVA KG+ V+++D P+ I G + Q DI +
Sbjct: 69 SPGGWSQVA------------SQKGVKVVAIDIKPVNTISG------VKYIQYDINELET 110
Query: 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187
L KD K DV+LSDMAP + G++ +DH I L A + FA + G ++KI+ G
Sbjct: 111 LRERFKDQKFDVILSDMAPESCGLKSLDHIRIMLLCEAALNFAKHFLNYGGKFVVKIFQG 170
Query: 188 RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226
+ + + + VK KP SSRS S E++L+G GF
Sbjct: 171 ESDKDFYNELKKMFKIVKYFKPKSSRSESTEMYLVGLGF 209
>sp|P95454|RLME_PSEAE Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rlmE PE=3 SV=2
Length = 207
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 121/214 (56%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+++ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ G + +L +D +P V + DFT+ + R++ + D
Sbjct: 63 SQVTSRVIGDRG---RLIASDILEMDSIP------DVTFIQGDFTEDAVFARILEAIGDH 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G Q +
Sbjct: 114 PVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +V++ KP SSR S E +LL RGF+G+
Sbjct: 174 QAREMFDKVQMRKPLSSRDRSREQYLLARGFRGE 207
>sp|Q02FS0|RLME_PSEAB Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=rlmE PE=3 SV=1
Length = 207
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 121/214 (56%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+++ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ G + +L +D +P V + DFT+ + R++ + D
Sbjct: 63 SQVTSRVIGDRG---RLIASDILEMDSIP------DVTFIQGDFTEDAVFARILEAIGDH 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G Q +
Sbjct: 114 PVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +V++ KP SSR S E +LL RGF+G+
Sbjct: 174 QAREMFDKVQMRKPLSSRDRSREQYLLARGFRGE 207
>sp|B7V1G4|RLME_PSEA8 Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
aeruginosa (strain LESB58) GN=rlmE PE=3 SV=1
Length = 207
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 121/214 (56%), Gaps = 9/214 (4%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSW 75
+ +S WLK F DPYV+ A+++ YR R+++KLLEI K + LRPG+ V+D GAAPG W
Sbjct: 3 RSKTSQRWLKEHFDDPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGW 62
Query: 76 SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD 135
SQV +++ G + +L +D +P V + DFT+ + R++ + D
Sbjct: 63 SQVTSRVIGDRG---RLIASDILEMDSIP------DVTFIQGDFTEDAVFARILEAIGDH 113
Query: 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
+D+V+SDMAPN +G+R D L + A +PG D LIKI+ G Q +
Sbjct: 114 PVDLVISDMAPNMSGVRAADQPRAMYLCELALDLAGRVLRPGGDFLIKIFQGEGFDQYHK 173
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ +V++ KP SSR S E +LL RGF+G+
Sbjct: 174 QAREMFDKVQMRKPLSSRDRSREQYLLARGFRGE 207
>sp|A5VUZ8|RLME_BRUO2 Ribosomal RNA large subunit methyltransferase E OS=Brucella ovis
(strain ATCC 25840 / 63/290 / NCTC 10512) GN=rlmE PE=3
SV=2
Length = 240
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + P+ V+ +D L + P+ G V+L + DF + +L+ L DK D
Sbjct: 98 AARIV---GSTDENPQ--VVGIDYLHVDPLPG-VILLEMDFLDDEAPQKLMDAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FAV+ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 211 QKFRSVHHVKPPASRAESVELYLLARDFKG 240
>sp|A6X5L4|RLME_OCHA4 Ribosomal RNA large subunit methyltransferase E OS=Ochrobactrum
anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
GN=rlmE PE=3 SV=1
Length = 240
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 122/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLQRHLNDPYVHKSRQDGYRSRAAYKLIEINDRYDLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A K+V G + P V+ +D L + P+ G VVL + DF + +L+ L DK D
Sbjct: 98 AAKIV---GSTDENPH--VVGIDYLHVDPLPG-VVLLEMDFLDDEAPQKLMDAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FA++ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAISVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 211 QKFRSVHHVKPPASRAESVELYLLARDFKG 240
>sp|A5VFI9|RLME_SPHWW Ribosomal RNA large subunit methyltransferase E OS=Sphingomonas
wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rlmE
PE=3 SV=1
Length = 229
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 122/216 (56%), Gaps = 11/216 (5%)
Query: 14 KGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPG 73
KG+ SS W++RQ DPYV+KA+ E YR R+A+KL+E+D + FLR +V+D G APG
Sbjct: 16 KGRSASSIKWIQRQLNDPYVRKAQAEGYRSRAAYKLIELDERFHFLRGAKRVIDLGIAPG 75
Query: 74 SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK 133
W+QV ++ P+ ++ +D LP PIDGA++L + DF + +L L
Sbjct: 76 GWTQVVRRVC---------PQAAIVGIDLLPTDPIDGAIIL-QMDFMSDEAPAQLAEAL- 124
Query: 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
D+VLSDMA N G ++ DH L A FA +PG + K+ G L
Sbjct: 125 GGPADIVLSDMAANTVGHQQTDHLRTMALVEAGCLFASEVLRPGGTYVAKVLAGGADHGL 184
Query: 194 EESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R ++ VK KPP+SR S+E +++ +GFKG+
Sbjct: 185 VAELKRLFTTVKHAKPPASRKDSSEWYVIAQGFKGR 220
>sp|A6U6F0|RLME_SINMW Ribosomal RNA large subunit methyltransferase E OS=Sinorhizobium
medicae (strain WSM419) GN=rlmE PE=3 SV=1
Length = 245
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 126/227 (55%), Gaps = 9/227 (3%)
Query: 5 TGPKL-KEVPKGK-DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
+G KL ++V KGK SS W++R DPYVQ+A+ E YR R+AFKLLEID K K L
Sbjct: 11 SGRKLGQKVKKGKLKASSRRWIERHINDPYVQRAQLEGYRARAAFKLLEIDEKHKILAGA 70
Query: 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQP 122
+++D GAAPGSWSQ+A K+ NS D + V ++D L + I G L + DF P
Sbjct: 71 RRIIDLGAAPGSWSQIAAKVTNSTDTDPR-----VAAIDFLEMDAIPGVSFL-QMDFLDP 124
Query: 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
++L + D+VLSDMA TG R+ DH L FAV G L
Sbjct: 125 QAPEKLKEAI-GGAPDIVLSDMAAPTTGHRQTDHIRTMHLCEVAAHFAVEVLAEGGHFLA 183
Query: 183 KIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
K + G L + + + QV +KP SSR+ S E+FLL +GFKG+
Sbjct: 184 KTFQGGTERDLLNMLKQNFRQVVHVKPASSRAESVEMFLLAKGFKGR 230
>sp|Q8FVY1|RLME_BRUSU Ribosomal RNA large subunit methyltransferase E OS=Brucella suis
biovar 1 (strain 1330) GN=rlmE PE=3 SV=2
Length = 240
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + P+ V+ +D L + P+ G V+L + DF + +L+ L DK D
Sbjct: 98 AARIV---GSTDENPQ--VVGIDYLHVDPLPG-VILLEMDFLDDEAPQKLMDAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FAV+ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 211 QKFRSVHHVKPPASRAESVELYLLARDFKG 240
>sp|A9WYY2|RLME_BRUSI Ribosomal RNA large subunit methyltransferase E OS=Brucella suis
(strain ATCC 23445 / NCTC 10510) GN=rlmE PE=3 SV=1
Length = 240
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 123/210 (58%), Gaps = 7/210 (3%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+R DPYV K++++ YR R+A+KL+EI+ + L+ G K++D GAAPG WSQ+
Sbjct: 38 SSRRWLERHLNDPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQI 97
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
A ++V G + P+ V+ +D L + P+ G V+L + DF + +L+ L DK D
Sbjct: 98 AARIV---GSTDENPQ--VVGIDYLHVDPLPG-VILLEMDFLDDEAPQKLMDAL-GDKPD 150
Query: 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198
+V+SDMA TG R DH L FAV+ KPG L K + G +L +
Sbjct: 151 LVISDMAAPTTGHRRTDHLRTVHLCEVAADFAVSVLKPGGHFLTKTFQGGTENELLALLK 210
Query: 199 RFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
+ + V +KPP+SR+ S EL+LL R FKG
Sbjct: 211 QKFRSVHHVKPPASRAESVELYLLARDFKG 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,717,717
Number of Sequences: 539616
Number of extensions: 3414093
Number of successful extensions: 11050
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 10052
Number of HSP's gapped (non-prelim): 485
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)