Query psy1489
Match_columns 229
No_of_seqs 214 out of 1770
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 23:25:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4589|consensus 100.0 2.8E-51 6.1E-56 316.8 19.2 206 15-229 23-229 (232)
2 COG0293 FtsJ 23S rRNA methylas 100.0 1.3E-49 2.9E-54 316.8 22.1 203 18-229 2-204 (205)
3 PRK11188 rrmJ 23S rRNA methylt 100.0 4.5E-44 9.7E-49 291.4 22.6 203 17-228 7-209 (209)
4 KOG1099|consensus 100.0 3.9E-43 8.4E-48 279.3 16.4 200 26-226 6-205 (294)
5 PF01728 FtsJ: FtsJ-like methy 100.0 2.8E-38 6E-43 252.0 9.6 177 41-226 1-181 (181)
6 KOG1098|consensus 100.0 3.7E-35 8.1E-40 260.6 11.2 194 27-229 10-203 (780)
7 TIGR00438 rrmJ cell division p 100.0 1.4E-31 2.9E-36 214.8 22.2 188 30-226 1-188 (188)
8 KOG3673|consensus 99.7 2.4E-17 5.1E-22 145.6 9.5 192 25-227 215-445 (845)
9 COG2226 UbiE Methylase involve 99.6 5.7E-16 1.2E-20 127.5 8.9 110 60-198 50-170 (238)
10 PF01209 Ubie_methyltran: ubiE 99.6 1.5E-16 3.4E-21 131.4 4.7 116 59-202 45-171 (233)
11 PTZ00146 fibrillarin; Provisio 99.6 2.1E-13 4.6E-18 115.1 17.5 138 59-225 130-286 (293)
12 COG4123 Predicted O-methyltran 99.6 4.2E-14 9E-19 116.6 11.2 155 55-227 38-212 (248)
13 KOG3674|consensus 99.5 2.2E-14 4.9E-19 125.6 8.9 188 41-229 109-321 (696)
14 PF05175 MTS: Methyltransferas 99.5 5.4E-14 1.2E-18 111.0 9.3 120 61-208 31-161 (170)
15 PLN02233 ubiquinone biosynthes 99.5 2.8E-14 6.1E-19 120.0 7.9 103 59-189 71-187 (261)
16 PRK14902 16S rRNA methyltransf 99.5 1.9E-13 4.1E-18 123.3 12.7 132 59-206 248-406 (444)
17 PRK14901 16S rRNA methyltransf 99.5 3.6E-13 7.8E-18 121.1 13.8 154 59-226 250-431 (434)
18 TIGR02752 MenG_heptapren 2-hep 99.5 2.8E-13 6E-18 111.7 12.0 104 59-190 43-157 (231)
19 PRK14103 trans-aconitate 2-met 99.5 9.9E-14 2.1E-18 116.3 8.2 120 29-185 4-127 (255)
20 PF12847 Methyltransf_18: Meth 99.5 2.7E-13 5.9E-18 99.0 9.3 96 61-183 1-110 (112)
21 PRK04266 fibrillarin; Provisio 99.5 2.1E-12 4.5E-17 106.4 15.4 137 59-225 70-225 (226)
22 PRK10901 16S rRNA methyltransf 99.5 1.3E-12 2.8E-17 117.3 14.9 149 59-224 242-423 (427)
23 KOG1540|consensus 99.5 6.2E-13 1.3E-17 108.7 10.5 122 60-204 99-234 (296)
24 PRK10258 biotin biosynthesis p 99.4 9.9E-13 2.1E-17 109.9 11.0 107 61-198 42-154 (251)
25 TIGR00446 nop2p NOL1/NOP2/sun 99.4 2E-12 4.3E-17 109.0 12.8 110 59-185 69-200 (264)
26 TIGR00563 rsmB ribosomal RNA s 99.4 3.3E-12 7.1E-17 114.6 14.7 125 59-199 236-386 (426)
27 PRK01683 trans-aconitate 2-met 99.4 5.7E-13 1.2E-17 111.7 8.8 96 59-184 29-130 (258)
28 PRK14903 16S rRNA methyltransf 99.4 3.5E-12 7.6E-17 114.5 13.7 112 59-186 235-368 (431)
29 COG2230 Cfa Cyclopropane fatty 99.4 1.1E-12 2.3E-17 110.2 9.4 108 48-187 60-179 (283)
30 COG4106 Tam Trans-aconitate me 99.4 7E-13 1.5E-17 106.0 7.3 120 29-185 5-130 (257)
31 PRK08287 cobalt-precorrin-6Y C 99.4 4.5E-12 9.8E-17 101.4 11.9 114 59-206 29-154 (187)
32 COG2813 RsmC 16S RNA G1207 met 99.4 5.9E-12 1.3E-16 106.1 12.8 130 62-227 159-299 (300)
33 PRK00121 trmB tRNA (guanine-N( 99.4 1.3E-12 2.9E-17 105.8 8.3 122 61-200 40-172 (202)
34 PRK15001 SAM-dependent 23S rib 99.4 3.2E-12 6.9E-17 112.3 11.1 118 62-207 229-360 (378)
35 PTZ00098 phosphoethanolamine N 99.4 4.2E-12 9.2E-17 107.0 11.1 105 52-185 44-157 (263)
36 TIGR00138 gidB 16S rRNA methyl 99.4 5.1E-12 1.1E-16 100.7 10.8 104 61-199 42-156 (181)
37 PLN02244 tocopherol O-methyltr 99.4 2.9E-12 6.3E-17 111.8 9.9 96 60-185 117-224 (340)
38 PRK15451 tRNA cmo(5)U34 methyl 99.4 5.6E-12 1.2E-16 105.2 11.0 99 59-184 54-164 (247)
39 PF13847 Methyltransf_31: Meth 99.4 1.2E-12 2.7E-17 101.1 6.5 100 60-186 2-112 (152)
40 PRK14904 16S rRNA methyltransf 99.4 1E-11 2.2E-16 112.0 13.3 124 59-200 248-396 (445)
41 PRK00377 cbiT cobalt-precorrin 99.4 7.1E-12 1.5E-16 101.2 10.7 126 59-214 38-175 (198)
42 PRK11873 arsM arsenite S-adeno 99.3 7E-12 1.5E-16 106.0 10.7 97 59-183 75-182 (272)
43 PRK00107 gidB 16S rRNA methylt 99.3 1.2E-11 2.7E-16 98.9 11.4 105 59-198 43-158 (187)
44 PF02353 CMAS: Mycolic acid cy 99.3 3.4E-12 7.5E-17 107.9 8.7 106 49-186 51-168 (273)
45 TIGR03534 RF_mod_PrmC protein- 99.3 2.5E-11 5.4E-16 101.0 13.3 133 61-213 87-246 (251)
46 TIGR02469 CbiT precorrin-6Y C5 99.3 1.2E-11 2.7E-16 91.5 10.3 95 59-184 17-122 (124)
47 PF08241 Methyltransf_11: Meth 99.3 1.4E-12 3E-17 91.8 4.5 87 66-182 1-95 (95)
48 TIGR00537 hemK_rel_arch HemK-r 99.3 2.9E-11 6.3E-16 96.0 12.6 125 61-207 19-163 (179)
49 PRK11207 tellurite resistance 99.3 9.2E-12 2E-16 100.5 9.7 92 61-182 30-132 (197)
50 PLN02490 MPBQ/MSBQ methyltrans 99.3 6.1E-12 1.3E-16 109.1 9.1 121 59-208 111-256 (340)
51 COG1189 Predicted rRNA methyla 99.3 7.1E-11 1.5E-15 96.1 14.4 157 38-224 56-241 (245)
52 PRK14966 unknown domain/N5-glu 99.3 6.1E-11 1.3E-15 104.8 14.9 146 59-226 249-419 (423)
53 TIGR00740 methyltransferase, p 99.3 1.6E-11 3.6E-16 101.8 10.8 99 59-184 51-161 (239)
54 TIGR00091 tRNA (guanine-N(7)-) 99.3 4.7E-12 1E-16 102.0 7.2 122 61-200 16-148 (194)
55 PRK15068 tRNA mo(5)U34 methylt 99.3 2E-11 4.4E-16 105.6 11.4 118 61-209 122-275 (322)
56 PRK11933 yebU rRNA (cytosine-C 99.3 6.1E-11 1.3E-15 107.0 14.6 110 59-184 111-242 (470)
57 TIGR00452 methyltransferase, p 99.3 3.4E-11 7.5E-16 103.5 12.4 106 47-184 108-225 (314)
58 TIGR00406 prmA ribosomal prote 99.3 2.4E-11 5.3E-16 103.6 11.3 113 59-206 157-281 (288)
59 PRK11760 putative 23S rRNA C24 99.3 2.4E-11 5.2E-16 104.2 11.1 119 40-194 183-317 (357)
60 COG2227 UbiG 2-polyprenyl-3-me 99.3 2.9E-12 6.3E-17 104.4 4.8 99 61-186 59-163 (243)
61 PRK09328 N5-glutamine S-adenos 99.3 8E-11 1.7E-15 99.4 13.7 132 60-211 107-265 (275)
62 TIGR02072 BioC biotin biosynth 99.3 4E-11 8.7E-16 98.6 11.0 99 61-188 34-139 (240)
63 PRK09489 rsmC 16S ribosomal RN 99.3 1.7E-10 3.7E-15 100.5 14.7 116 62-207 197-323 (342)
64 TIGR00536 hemK_fam HemK family 99.3 1.1E-10 2.3E-15 99.5 13.0 131 63-213 116-274 (284)
65 PRK14967 putative methyltransf 99.3 8.2E-11 1.8E-15 96.7 11.7 122 59-200 34-175 (223)
66 TIGR00477 tehB tellurite resis 99.3 3.8E-11 8.2E-16 96.8 9.5 94 61-184 30-133 (195)
67 PRK14968 putative methyltransf 99.2 3.6E-10 7.8E-15 89.8 14.7 120 60-200 22-164 (188)
68 PF13659 Methyltransf_26: Meth 99.2 9.9E-12 2.1E-16 91.4 5.2 103 62-184 1-115 (117)
69 PLN02396 hexaprenyldihydroxybe 99.2 1.9E-11 4E-16 105.6 7.6 94 61-185 131-236 (322)
70 PF14314 Methyltrans_Mon: Viru 99.2 1.7E-10 3.8E-15 106.6 14.2 182 28-228 291-503 (675)
71 PRK11036 putative S-adenosyl-L 99.2 2.1E-11 4.6E-16 102.2 7.4 97 60-186 43-151 (255)
72 PRK11088 rrmA 23S rRNA methylt 99.2 4.2E-11 9E-16 101.4 9.1 102 61-195 85-192 (272)
73 PRK13942 protein-L-isoaspartat 99.2 4.4E-11 9.6E-16 97.7 8.7 92 59-184 74-176 (212)
74 TIGR00080 pimt protein-L-isoas 99.2 4.9E-11 1.1E-15 97.5 8.9 93 59-185 75-178 (215)
75 TIGR03587 Pse_Me-ase pseudamin 99.2 1.4E-10 3.1E-15 94.1 11.4 97 59-185 41-143 (204)
76 TIGR03533 L3_gln_methyl protei 99.2 3.5E-10 7.6E-15 96.3 14.2 119 61-200 121-265 (284)
77 TIGR03704 PrmC_rel_meth putati 99.2 1.5E-10 3.3E-15 96.9 11.7 122 62-200 87-231 (251)
78 TIGR01177 conserved hypothetic 99.2 9.8E-11 2.1E-15 101.7 10.9 111 59-191 180-301 (329)
79 PLN02336 phosphoethanolamine N 99.2 3.5E-11 7.5E-16 109.4 8.1 98 59-186 264-371 (475)
80 PRK08317 hypothetical protein; 99.2 9.1E-11 2E-15 96.4 9.2 98 59-184 17-124 (241)
81 PRK05785 hypothetical protein; 99.2 6.8E-11 1.5E-15 97.5 8.3 88 60-177 50-140 (226)
82 PF13489 Methyltransf_23: Meth 99.2 1E-11 2.2E-16 96.0 2.7 98 59-187 20-118 (161)
83 PRK11705 cyclopropane fatty ac 99.2 1.2E-10 2.7E-15 103.0 10.0 96 59-185 165-268 (383)
84 PF13649 Methyltransf_25: Meth 99.2 2.3E-11 5E-16 87.5 4.4 91 65-178 1-101 (101)
85 PRK01544 bifunctional N5-gluta 99.2 3.2E-10 6.9E-15 103.7 12.7 132 62-213 139-298 (506)
86 PRK06922 hypothetical protein; 99.2 1.3E-10 2.9E-15 107.2 10.0 108 61-184 418-537 (677)
87 PF07021 MetW: Methionine bios 99.2 1.3E-10 2.8E-15 92.1 8.4 96 58-184 10-109 (193)
88 PF08242 Methyltransf_12: Meth 99.2 2.1E-11 4.5E-16 87.3 3.6 88 66-180 1-99 (99)
89 PRK13944 protein-L-isoaspartat 99.2 1.7E-10 3.6E-15 93.7 9.2 92 59-184 70-173 (205)
90 PRK14121 tRNA (guanine-N(7)-)- 99.2 1.4E-10 3E-15 101.8 9.3 116 61-197 122-248 (390)
91 COG0144 Sun tRNA and rRNA cyto 99.1 6.6E-10 1.4E-14 97.4 12.7 128 59-200 154-307 (355)
92 PRK07402 precorrin-6B methylas 99.1 5.2E-10 1.1E-14 90.1 10.7 122 59-212 38-171 (196)
93 PRK00517 prmA ribosomal protei 99.1 5.2E-10 1.1E-14 93.6 10.9 114 59-204 117-234 (250)
94 TIGR00478 tly hemolysin TlyA f 99.1 1.8E-10 3.9E-15 94.8 7.9 112 40-184 54-171 (228)
95 PF06325 PrmA: Ribosomal prote 99.1 2.3E-10 4.9E-15 97.5 8.5 108 59-202 159-277 (295)
96 COG2242 CobL Precorrin-6B meth 99.1 2.1E-09 4.6E-14 84.8 13.1 108 59-200 32-151 (187)
97 PRK12335 tellurite resistance 99.1 2.7E-10 5.9E-15 97.2 8.8 91 62-183 121-222 (287)
98 PRK04457 spermidine synthase; 99.1 1.2E-09 2.5E-14 92.0 12.3 124 60-207 65-202 (262)
99 PRK11805 N5-glutamine S-adenos 99.1 5.4E-10 1.2E-14 96.2 10.2 105 63-186 135-265 (307)
100 COG2264 PrmA Ribosomal protein 99.1 7.8E-10 1.7E-14 93.7 10.7 120 59-208 160-288 (300)
101 PF05401 NodS: Nodulation prot 99.1 2.6E-10 5.7E-15 90.6 7.2 117 62-208 44-179 (201)
102 TIGR03438 probable methyltrans 99.1 2.5E-09 5.5E-14 91.8 13.6 126 40-186 40-179 (301)
103 KOG1270|consensus 99.1 5.4E-10 1.2E-14 92.0 8.0 90 62-185 90-196 (282)
104 PHA03411 putative methyltransf 99.1 1.9E-09 4E-14 90.5 11.2 120 61-200 64-205 (279)
105 COG2890 HemK Methylase of poly 99.1 3.1E-09 6.7E-14 90.3 12.4 125 64-209 113-264 (280)
106 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 5.6E-10 1.2E-14 91.0 7.5 101 60-188 38-147 (223)
107 smart00828 PKS_MT Methyltransf 99.0 7.4E-10 1.6E-14 90.8 8.1 93 63-185 1-105 (224)
108 PRK00216 ubiE ubiquinone/menaq 99.0 1.9E-09 4E-14 88.8 10.3 100 60-187 50-161 (239)
109 PRK00811 spermidine synthase; 99.0 2.4E-09 5.1E-14 91.2 11.0 141 60-224 75-236 (283)
110 PRK15128 23S rRNA m(5)C1962 me 99.0 3.2E-09 6.9E-14 94.3 12.0 123 60-200 219-356 (396)
111 PLN02336 phosphoethanolamine N 99.0 6.5E-10 1.4E-14 101.1 7.6 98 60-184 36-142 (475)
112 COG2519 GCD14 tRNA(1-methylade 99.0 2.3E-09 4.9E-14 88.2 9.6 136 59-228 92-253 (256)
113 PRK11783 rlmL 23S rRNA m(2)G24 99.0 1.1E-08 2.4E-13 97.2 15.2 108 60-185 537-657 (702)
114 TIGR03840 TMPT_Se_Te thiopurin 99.0 1.2E-09 2.5E-14 89.3 7.4 98 60-185 33-153 (213)
115 PF03848 TehB: Tellurite resis 99.0 4.9E-10 1.1E-14 89.6 5.0 123 55-208 25-166 (192)
116 KOG4300|consensus 99.0 6.2E-10 1.3E-14 88.7 5.4 110 63-201 78-199 (252)
117 PF08003 Methyltransf_9: Prote 99.0 4.9E-09 1.1E-13 88.6 10.5 133 45-209 100-268 (315)
118 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.0 1.9E-09 4.1E-14 91.7 8.1 133 59-207 83-244 (283)
119 PRK00312 pcm protein-L-isoaspa 99.0 3.6E-09 7.8E-14 86.2 9.4 90 59-185 76-176 (212)
120 smart00138 MeTrc Methyltransfe 99.0 1.4E-09 3.1E-14 91.6 7.1 101 61-183 99-241 (264)
121 PLN03075 nicotianamine synthas 99.0 2.8E-09 6.1E-14 90.5 8.8 128 61-218 123-269 (296)
122 PRK13943 protein-L-isoaspartat 99.0 3.4E-09 7.3E-14 91.6 9.3 92 59-184 78-180 (322)
123 TIGR02716 C20_methyl_CrtF C-20 99.0 1.7E-09 3.6E-14 93.1 7.1 98 59-185 147-255 (306)
124 PHA03412 putative methyltransf 98.9 3.4E-09 7.4E-14 87.1 8.0 103 61-179 49-158 (241)
125 PLN02672 methionine S-methyltr 98.9 3.5E-09 7.5E-14 103.3 9.2 129 62-210 119-305 (1082)
126 PRK06202 hypothetical protein; 98.9 6.2E-09 1.3E-13 86.0 8.7 103 60-187 59-169 (232)
127 PF01135 PCMT: Protein-L-isoas 98.9 7.7E-10 1.7E-14 90.0 2.8 94 59-186 70-174 (209)
128 TIGR02081 metW methionine bios 98.9 4E-09 8.6E-14 84.8 6.7 70 59-145 11-84 (194)
129 KOG1122|consensus 98.9 2.7E-08 5.8E-13 86.9 12.0 133 59-207 239-396 (460)
130 PF06460 NSP13: Coronavirus NS 98.9 1.8E-08 3.9E-13 82.7 10.1 150 59-229 59-212 (299)
131 PRK13255 thiopurine S-methyltr 98.9 9E-09 1.9E-13 84.4 8.5 95 60-182 36-153 (218)
132 KOG1271|consensus 98.9 7.1E-09 1.5E-13 81.1 7.2 123 63-207 69-204 (227)
133 COG1092 Predicted SAM-dependen 98.9 2.8E-08 6E-13 87.6 11.7 121 61-199 217-352 (393)
134 COG4976 Predicted methyltransf 98.9 7.1E-09 1.5E-13 83.9 6.9 115 44-186 109-227 (287)
135 COG2521 Predicted archaeal met 98.8 3.9E-08 8.5E-13 79.8 11.0 123 60-207 133-276 (287)
136 PF08704 GCD14: tRNA methyltra 98.8 1E-08 2.2E-13 85.3 7.5 119 59-207 38-170 (247)
137 PLN02781 Probable caffeoyl-CoA 98.8 1.3E-08 2.8E-13 84.3 8.1 99 60-183 67-177 (234)
138 PLN02366 spermidine synthase 98.8 9.8E-08 2.1E-12 82.1 13.0 123 60-205 90-232 (308)
139 COG2518 Pcm Protein-L-isoaspar 98.8 3.5E-08 7.5E-13 79.5 9.1 90 59-185 70-170 (209)
140 KOG1975|consensus 98.8 1.1E-08 2.3E-13 86.6 6.3 151 26-200 74-250 (389)
141 TIGR00417 speE spermidine synt 98.8 1.9E-07 4E-12 79.1 12.9 141 61-225 72-232 (270)
142 PF02390 Methyltransf_4: Putat 98.7 1E-08 2.2E-13 82.7 4.6 119 63-199 19-148 (195)
143 cd02440 AdoMet_MTases S-adenos 98.7 9.6E-08 2.1E-12 66.9 8.7 92 64-183 1-103 (107)
144 KOG2904|consensus 98.7 1E-07 2.3E-12 79.1 9.8 136 62-214 149-320 (328)
145 TIGR01983 UbiG ubiquinone bios 98.7 1E-07 2.2E-12 78.0 9.8 95 61-185 45-150 (224)
146 TIGR02021 BchM-ChlM magnesium 98.7 4.9E-08 1.1E-12 79.9 7.7 90 60-181 54-155 (219)
147 smart00650 rADc Ribosomal RNA 98.7 8.7E-08 1.9E-12 75.4 8.6 68 59-146 11-87 (169)
148 PRK03612 spermidine synthase; 98.7 8.9E-08 1.9E-12 88.1 9.6 119 60-201 296-437 (521)
149 PRK01581 speE spermidine synth 98.7 3.2E-07 7E-12 79.9 11.7 125 61-208 150-296 (374)
150 KOG1541|consensus 98.7 2.3E-08 4.9E-13 80.6 4.1 139 62-223 51-201 (270)
151 COG1041 Predicted DNA modifica 98.7 2.1E-07 4.5E-12 80.2 10.2 136 59-221 195-343 (347)
152 PRK05134 bifunctional 3-demeth 98.7 1.4E-07 3E-12 77.8 8.9 97 60-186 47-153 (233)
153 PRK10909 rsmD 16S rRNA m(2)G96 98.6 1.1E-07 2.5E-12 76.7 7.7 100 60-187 52-162 (199)
154 PLN02476 O-methyltransferase 98.6 2.6E-07 5.6E-12 78.1 9.6 99 60-183 117-227 (278)
155 PF10672 Methyltrans_SAM: S-ad 98.6 1.2E-07 2.7E-12 80.4 7.4 127 60-207 122-265 (286)
156 PF01269 Fibrillarin: Fibrilla 98.6 7.7E-08 1.7E-12 77.9 5.6 99 59-184 71-178 (229)
157 KOG1499|consensus 98.6 1.1E-07 2.4E-12 81.6 6.7 93 61-181 60-164 (346)
158 PF05148 Methyltransf_8: Hypot 98.6 3E-07 6.5E-12 73.9 8.5 104 60-200 71-176 (219)
159 KOG3010|consensus 98.6 1.2E-07 2.6E-12 77.4 6.0 95 61-182 32-135 (261)
160 KOG2361|consensus 98.5 9.3E-08 2E-12 78.0 4.8 110 64-194 74-193 (264)
161 PRK13168 rumA 23S rRNA m(5)U19 98.5 5.3E-07 1.2E-11 81.5 10.0 95 59-185 295-401 (443)
162 KOG3191|consensus 98.5 2.7E-06 5.9E-11 66.7 12.2 128 62-207 44-191 (209)
163 PRK07580 Mg-protoporphyrin IX 98.5 4.6E-07 9.9E-12 74.4 7.8 63 60-145 62-136 (230)
164 PF03291 Pox_MCEL: mRNA cappin 98.5 2.7E-07 5.8E-12 80.1 6.4 114 61-199 62-198 (331)
165 TIGR00095 RNA methyltransferas 98.5 5.1E-07 1.1E-11 72.4 7.5 100 61-186 49-161 (189)
166 KOG2198|consensus 98.5 2.3E-06 5.1E-11 74.0 11.4 142 59-207 153-322 (375)
167 PLN02585 magnesium protoporphy 98.5 9.4E-07 2E-11 76.3 8.9 33 61-104 144-176 (315)
168 PRK11727 23S rRNA mA1618 methy 98.5 2.8E-06 6.1E-11 73.4 11.8 149 61-227 114-308 (321)
169 PF01596 Methyltransf_3: O-met 98.4 1.3E-07 2.9E-12 76.7 2.9 98 61-183 45-154 (205)
170 KOG1500|consensus 98.4 1.2E-06 2.7E-11 74.8 8.2 92 61-181 177-279 (517)
171 PRK13256 thiopurine S-methyltr 98.4 5.4E-07 1.2E-11 74.1 5.9 101 60-186 42-165 (226)
172 COG2263 Predicted RNA methylas 98.4 1E-06 2.3E-11 69.6 6.8 66 61-148 45-120 (198)
173 COG0220 Predicted S-adenosylme 98.4 1.1E-06 2.4E-11 72.3 7.2 105 63-186 50-166 (227)
174 KOG3045|consensus 98.4 3.3E-06 7.1E-11 69.8 9.6 102 60-200 179-282 (325)
175 PF00891 Methyltransf_2: O-met 98.4 6.3E-07 1.4E-11 74.4 5.4 96 59-184 98-199 (241)
176 KOG1596|consensus 98.3 8.7E-07 1.9E-11 72.4 5.7 99 59-184 154-261 (317)
177 COG3963 Phospholipid N-methylt 98.3 2.7E-06 5.8E-11 65.9 8.0 107 59-186 46-158 (194)
178 PF05219 DREV: DREV methyltran 98.3 1.1E-06 2.4E-11 72.9 6.4 91 61-184 94-188 (265)
179 PLN02823 spermine synthase 98.3 8.9E-06 1.9E-10 70.8 12.2 126 61-208 103-250 (336)
180 PF10294 Methyltransf_16: Puta 98.3 3.4E-06 7.5E-11 66.6 8.7 116 59-199 43-172 (173)
181 TIGR00479 rumA 23S rRNA (uraci 98.3 6.2E-06 1.3E-10 74.3 11.3 70 59-145 290-371 (431)
182 COG1889 NOP1 Fibrillarin-like 98.3 3.2E-05 7E-10 61.8 13.9 97 59-183 74-179 (231)
183 PRK03522 rumB 23S rRNA methylu 98.3 3.2E-06 7E-11 73.1 9.1 66 61-145 173-249 (315)
184 PRK01544 bifunctional N5-gluta 98.3 1.5E-06 3.1E-11 79.8 7.1 106 61-186 347-464 (506)
185 PRK00050 16S rRNA m(4)C1402 me 98.3 2.6E-06 5.6E-11 72.7 7.5 72 59-145 17-99 (296)
186 COG4122 Predicted O-methyltran 98.2 1.4E-06 3E-11 71.1 4.8 95 60-183 58-165 (219)
187 PRK14896 ksgA 16S ribosomal RN 98.2 2.3E-06 5E-11 71.9 6.2 67 59-147 27-102 (258)
188 PF03602 Cons_hypoth95: Conser 98.2 5.1E-07 1.1E-11 72.0 2.1 100 61-187 42-156 (183)
189 PLN02589 caffeoyl-CoA O-methyl 98.2 5.4E-06 1.2E-10 69.1 8.0 95 61-183 79-189 (247)
190 KOG2899|consensus 98.2 2.9E-06 6.3E-11 69.5 5.8 34 62-104 59-92 (288)
191 PF01170 UPF0020: Putative RNA 98.2 1.6E-05 3.6E-10 63.1 10.0 97 59-176 26-143 (179)
192 PTZ00338 dimethyladenosine tra 98.2 1.7E-06 3.8E-11 74.0 4.4 67 59-147 34-112 (294)
193 PRK00274 ksgA 16S ribosomal RN 98.2 1.5E-06 3.2E-11 73.7 3.8 68 59-146 40-115 (272)
194 PF05185 PRMT5: PRMT5 arginine 98.2 4.7E-07 1E-11 81.6 0.7 93 62-181 187-294 (448)
195 TIGR00755 ksgA dimethyladenosi 98.1 1E-05 2.2E-10 67.8 7.7 66 59-146 27-104 (253)
196 PF05724 TPMT: Thiopurine S-me 98.0 1.3E-05 2.9E-10 65.6 6.8 121 59-207 35-189 (218)
197 COG0742 N6-adenine-specific me 98.0 2.9E-05 6.2E-10 61.7 8.3 102 61-187 43-157 (187)
198 TIGR02085 meth_trns_rumB 23S r 98.0 2.3E-05 5.1E-10 69.3 8.6 91 61-184 233-334 (374)
199 PRK04338 N(2),N(2)-dimethylgua 98.0 2.5E-05 5.4E-10 69.3 8.5 90 62-184 58-158 (382)
200 PF02475 Met_10: Met-10+ like- 98.0 7.1E-06 1.5E-10 66.3 4.4 88 59-180 99-198 (200)
201 KOG2940|consensus 98.0 9.1E-06 2E-10 66.2 4.9 112 56-197 67-187 (325)
202 TIGR03439 methyl_EasF probable 98.0 0.00068 1.5E-08 58.7 16.4 130 40-185 53-198 (319)
203 PLN02232 ubiquinone biosynthes 98.0 7.7E-06 1.7E-10 63.8 3.7 60 110-189 27-86 (160)
204 PF06080 DUF938: Protein of un 97.9 1.4E-05 3.1E-10 64.3 5.2 107 59-184 22-141 (204)
205 COG2520 Predicted methyltransf 97.9 9.3E-05 2E-09 64.3 10.4 131 59-224 186-335 (341)
206 PRK04148 hypothetical protein; 97.9 4E-05 8.6E-10 57.8 6.5 94 61-189 16-114 (134)
207 KOG1663|consensus 97.9 8.6E-05 1.9E-09 60.5 8.3 98 61-183 73-182 (237)
208 COG0357 GidB Predicted S-adeno 97.9 0.00025 5.5E-09 57.8 11.1 87 62-182 68-166 (215)
209 KOG1661|consensus 97.8 4.9E-05 1.1E-09 61.1 6.1 93 59-185 80-194 (237)
210 PRK00536 speE spermidine synth 97.8 0.00015 3.2E-09 61.0 9.3 109 60-207 71-198 (262)
211 COG0421 SpeE Spermidine syntha 97.8 0.00039 8.5E-09 59.1 11.8 119 63-205 78-215 (282)
212 KOG3420|consensus 97.8 2.2E-05 4.8E-10 59.6 3.7 67 61-146 48-124 (185)
213 PF02384 N6_Mtase: N-6 DNA Met 97.8 4.3E-05 9.3E-10 65.8 6.1 132 59-199 44-203 (311)
214 KOG2915|consensus 97.8 0.00011 2.3E-09 61.4 8.0 72 59-145 103-186 (314)
215 TIGR02143 trmA_only tRNA (urac 97.8 0.00013 2.9E-09 64.0 8.8 70 62-145 198-288 (353)
216 PF09445 Methyltransf_15: RNA 97.8 3.9E-05 8.5E-10 59.9 4.8 117 63-200 1-135 (163)
217 KOG0820|consensus 97.8 0.00011 2.3E-09 61.4 7.5 76 50-148 48-135 (315)
218 PRK05031 tRNA (uracil-5-)-meth 97.8 3.5E-05 7.6E-10 67.9 5.0 70 62-145 207-297 (362)
219 PF01564 Spermine_synth: Sperm 97.8 7.7E-05 1.7E-09 62.3 6.7 125 61-208 76-219 (246)
220 COG0030 KsgA Dimethyladenosine 97.7 0.00011 2.3E-09 61.6 7.2 70 59-147 28-106 (259)
221 COG4076 Predicted RNA methylas 97.7 5.9E-05 1.3E-09 59.7 5.2 88 63-181 34-132 (252)
222 PF08123 DOT1: Histone methyla 97.7 0.00025 5.3E-09 57.6 9.0 100 55-182 37-156 (205)
223 PF13578 Methyltransf_24: Meth 97.7 2.2E-05 4.9E-10 56.6 2.5 91 66-183 1-104 (106)
224 PF02527 GidB: rRNA small subu 97.7 3.6E-05 7.9E-10 61.4 3.8 90 64-189 51-151 (184)
225 PF11968 DUF3321: Putative met 97.6 0.00061 1.3E-08 55.3 9.7 127 63-225 53-192 (219)
226 PF04989 CmcI: Cephalosporin h 97.6 0.00029 6.4E-09 56.9 7.1 107 59-184 31-147 (206)
227 TIGR00308 TRM1 tRNA(guanine-26 97.5 0.00022 4.8E-09 63.1 6.6 90 63-183 46-146 (374)
228 PF03141 Methyltransf_29: Puta 97.5 5.8E-05 1.2E-09 68.0 2.9 98 63-185 119-220 (506)
229 KOG1331|consensus 97.5 0.00034 7.5E-09 58.8 7.2 99 59-187 43-146 (293)
230 TIGR02987 met_A_Alw26 type II 97.3 0.002 4.3E-08 59.6 10.7 43 61-104 31-73 (524)
231 COG2933 Predicted SAM-dependen 97.3 0.00066 1.4E-08 56.5 6.7 85 40-145 183-279 (358)
232 COG2265 TrmA SAM-dependent met 97.3 0.00032 7E-09 63.1 5.3 70 59-145 291-371 (432)
233 COG4798 Predicted methyltransf 97.3 0.00037 8E-09 55.5 4.6 38 59-104 46-83 (238)
234 PRK10611 chemotaxis methyltran 97.2 0.00079 1.7E-08 57.4 6.5 41 134-183 221-261 (287)
235 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.0032 6.9E-08 60.3 11.0 112 60-182 189-345 (702)
236 KOG2187|consensus 97.1 0.00079 1.7E-08 60.8 5.5 55 55-121 377-442 (534)
237 PRK11524 putative methyltransf 97.1 0.0067 1.4E-07 51.7 11.0 91 112-210 10-108 (284)
238 PF05958 tRNA_U5-meth_tr: tRNA 97.1 0.00025 5.3E-09 62.4 2.2 71 63-145 198-287 (352)
239 PF01739 CheR: CheR methyltran 97.1 0.0011 2.4E-08 53.5 5.7 100 62-183 32-174 (196)
240 PF09243 Rsm22: Mitochondrial 97.1 0.0012 2.7E-08 55.9 6.3 46 50-104 23-68 (274)
241 KOG0024|consensus 97.1 0.003 6.6E-08 54.2 8.4 101 59-186 167-275 (354)
242 PF12147 Methyltransf_20: Puta 97.1 0.0024 5.2E-08 54.1 7.7 101 62-183 136-248 (311)
243 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.0 0.0014 3.1E-08 54.9 5.8 81 136-224 158-255 (256)
244 PF06962 rRNA_methylase: Putat 97.0 0.0014 3.1E-08 49.7 5.1 117 96-223 1-138 (140)
245 PF03141 Methyltransf_29: Puta 97.0 0.0021 4.6E-08 58.1 7.0 132 63-225 367-506 (506)
246 COG0275 Predicted S-adenosylme 96.9 0.017 3.6E-07 49.3 11.4 75 59-145 21-105 (314)
247 COG1063 Tdh Threonine dehydrog 96.9 0.0073 1.6E-07 53.0 9.8 101 60-188 167-273 (350)
248 KOG1269|consensus 96.9 0.00021 4.6E-09 62.8 -0.1 97 59-185 108-216 (364)
249 PRK13699 putative methylase; P 96.9 0.014 3E-07 48.2 10.4 84 128-212 12-103 (227)
250 PF00398 RrnaAD: Ribosomal RNA 96.9 0.0016 3.4E-08 54.9 4.9 69 60-145 29-106 (262)
251 KOG2671|consensus 96.8 0.0055 1.2E-07 53.0 7.4 108 57-183 204-353 (421)
252 COG1352 CheR Methylase of chem 96.7 0.0085 1.8E-07 50.6 7.9 40 134-182 200-239 (268)
253 TIGR00006 S-adenosyl-methyltra 96.7 0.006 1.3E-07 52.4 6.8 74 59-145 18-101 (305)
254 PRK10742 putative methyltransf 96.6 0.014 2.9E-07 48.7 8.4 69 59-146 84-174 (250)
255 COG0500 SmtA SAM-dependent met 96.6 0.013 2.8E-07 43.0 7.5 93 65-186 52-157 (257)
256 COG3897 Predicted methyltransf 96.6 0.0023 5E-08 51.1 3.4 91 61-186 79-179 (218)
257 PF04672 Methyltransf_19: S-ad 96.5 0.011 2.4E-07 49.7 7.3 108 63-188 70-194 (267)
258 PF13679 Methyltransf_32: Meth 96.4 0.0038 8.2E-08 47.5 3.9 40 60-104 24-63 (141)
259 TIGR01444 fkbM_fam methyltrans 96.4 0.0031 6.8E-08 47.6 3.3 32 64-104 1-32 (143)
260 KOG3115|consensus 96.4 0.012 2.5E-07 47.5 6.2 32 63-103 62-93 (249)
261 KOG3987|consensus 96.3 0.0008 1.7E-08 54.2 -0.4 90 62-184 113-207 (288)
262 PF05891 Methyltransf_PK: AdoM 96.3 0.0034 7.3E-08 51.1 2.9 94 62-184 56-161 (218)
263 PRK09424 pntA NAD(P) transhydr 95.8 0.037 8E-07 51.0 7.7 103 60-184 163-285 (509)
264 KOG1709|consensus 95.8 0.049 1.1E-06 44.4 7.4 95 59-181 99-203 (271)
265 cd08283 FDH_like_1 Glutathione 95.7 0.085 1.8E-06 46.7 9.5 113 59-183 182-305 (386)
266 TIGR03451 mycoS_dep_FDH mycoth 95.7 0.07 1.5E-06 46.6 8.8 97 59-184 174-276 (358)
267 KOG3178|consensus 95.6 0.039 8.5E-07 47.9 6.7 92 62-185 178-276 (342)
268 KOG2730|consensus 95.6 0.019 4.1E-07 46.8 4.4 70 61-146 94-175 (263)
269 COG0116 Predicted N6-adenine-s 95.5 0.077 1.7E-06 46.9 8.0 109 60-183 190-343 (381)
270 COG1064 AdhP Zn-dependent alco 95.4 0.061 1.3E-06 46.9 7.2 92 59-186 164-261 (339)
271 COG4262 Predicted spermidine s 95.3 0.058 1.3E-06 47.3 6.6 102 60-185 288-408 (508)
272 cd08281 liver_ADH_like1 Zinc-d 95.3 0.098 2.1E-06 46.0 8.4 97 59-184 189-290 (371)
273 COG0286 HsdM Type I restrictio 95.2 0.081 1.8E-06 48.6 7.7 118 60-186 185-328 (489)
274 COG3510 CmcI Cephalosporin hyd 94.9 0.6 1.3E-05 37.5 10.8 104 62-183 70-179 (237)
275 cd08239 THR_DH_like L-threonin 94.9 0.14 2.9E-06 44.3 8.0 96 59-183 161-261 (339)
276 COG5459 Predicted rRNA methyla 94.6 0.018 3.8E-07 50.1 1.7 23 166-188 207-229 (484)
277 COG4627 Uncharacterized protei 94.5 0.025 5.5E-07 43.6 2.2 47 130-185 41-87 (185)
278 cd08237 ribitol-5-phosphate_DH 94.2 0.18 3.9E-06 43.9 7.2 95 59-184 161-256 (341)
279 PF07942 N2227: N2227-like pro 94.2 0.2 4.4E-06 42.3 7.1 33 61-104 56-88 (270)
280 PF01795 Methyltransf_5: MraW 94.1 0.053 1.2E-06 46.7 3.6 75 59-145 18-102 (310)
281 cd08254 hydroxyacyl_CoA_DH 6-h 94.0 0.27 5.9E-06 42.0 7.9 95 59-183 163-262 (338)
282 TIGR03366 HpnZ_proposed putati 93.9 0.32 7E-06 40.9 8.0 95 60-184 119-218 (280)
283 PLN02740 Alcohol dehydrogenase 93.9 0.48 1.1E-05 41.8 9.4 95 59-183 196-299 (381)
284 PRK08177 short chain dehydroge 93.6 1.6 3.4E-05 35.2 11.3 73 64-145 3-80 (225)
285 cd08285 NADP_ADH NADP(H)-depen 93.6 0.51 1.1E-05 40.9 8.9 96 59-182 164-264 (351)
286 PF03059 NAS: Nicotianamine sy 93.6 0.24 5.2E-06 42.0 6.6 119 63-210 122-259 (276)
287 PF01555 N6_N4_Mtase: DNA meth 93.6 0.29 6.4E-06 39.3 6.9 50 137-186 1-58 (231)
288 PF00107 ADH_zinc_N: Zinc-bind 93.5 0.064 1.4E-06 39.5 2.6 86 73-187 3-92 (130)
289 PF10354 DUF2431: Domain of un 93.4 1.1 2.5E-05 35.0 9.7 56 133-188 72-129 (166)
290 PLN02827 Alcohol dehydrogenase 93.4 0.79 1.7E-05 40.5 9.9 95 59-183 191-294 (378)
291 PRK09880 L-idonate 5-dehydroge 93.4 0.35 7.7E-06 41.9 7.6 94 60-184 168-266 (343)
292 PRK10309 galactitol-1-phosphat 93.4 0.49 1.1E-05 41.0 8.4 96 59-184 158-260 (347)
293 PRK06398 aldose dehydrogenase; 93.3 2.7 5.8E-05 34.8 12.4 76 61-146 5-82 (258)
294 TIGR03201 dearomat_had 6-hydro 93.2 0.41 9E-06 41.6 7.7 36 59-104 164-200 (349)
295 KOG1209|consensus 93.1 1.8 4E-05 35.5 10.5 80 62-149 7-94 (289)
296 KOG2360|consensus 93.0 0.11 2.5E-06 45.6 3.7 80 60-154 212-302 (413)
297 PF06016 Reovirus_L2: Reovirus 92.9 0.14 2.9E-06 51.3 4.5 92 131-226 564-657 (1289)
298 KOG4022|consensus 92.9 3.7 8E-05 32.3 11.7 112 63-183 4-128 (236)
299 KOG2651|consensus 92.9 0.18 3.9E-06 44.5 4.7 36 59-104 151-186 (476)
300 PRK07533 enoyl-(acyl carrier p 92.8 3.4 7.4E-05 34.1 12.4 78 61-146 9-98 (258)
301 cd08238 sorbose_phosphate_red 92.7 0.7 1.5E-05 41.3 8.6 100 59-183 173-287 (410)
302 cd05188 MDR Medium chain reduc 92.6 1.1 2.3E-05 36.7 9.1 97 57-183 130-231 (271)
303 PF11599 AviRa: RRNA methyltra 92.6 1.4 3E-05 36.1 9.1 111 62-186 52-215 (246)
304 KOG2352|consensus 92.6 0.7 1.5E-05 42.0 8.2 106 60-185 46-162 (482)
305 cd00401 AdoHcyase S-adenosyl-L 92.4 0.47 1E-05 42.7 7.0 86 57-183 197-288 (413)
306 PLN03154 putative allyl alcoho 92.4 0.71 1.5E-05 40.2 8.1 94 59-183 156-257 (348)
307 PF12692 Methyltransf_17: S-ad 92.3 0.59 1.3E-05 35.8 6.3 99 63-182 30-132 (160)
308 PF04816 DUF633: Family of unk 92.2 0.24 5.2E-06 40.2 4.5 102 65-200 1-115 (205)
309 TIGR02819 fdhA_non_GSH formald 92.2 0.9 2E-05 40.5 8.6 110 59-184 183-299 (393)
310 cd05278 FDH_like Formaldehyde 92.2 1.4 3.1E-05 37.8 9.7 95 59-182 165-265 (347)
311 PLN02586 probable cinnamyl alc 92.2 0.53 1.1E-05 41.3 7.0 91 59-183 181-277 (360)
312 PF04445 SAM_MT: Putative SAM- 92.1 0.11 2.4E-06 42.9 2.5 69 59-146 71-161 (234)
313 cd08233 butanediol_DH_like (2R 92.1 1 2.2E-05 39.0 8.7 97 59-183 170-271 (351)
314 TIGR02818 adh_III_F_hyde S-(hy 92.0 1.3 2.9E-05 38.8 9.4 97 59-184 183-287 (368)
315 PRK06179 short chain dehydroge 92.0 6.1 0.00013 32.6 13.3 76 62-146 4-83 (270)
316 PF03269 DUF268: Caenorhabditi 92.0 0.96 2.1E-05 35.3 7.2 113 62-188 2-115 (177)
317 cd00315 Cyt_C5_DNA_methylase C 92.0 0.27 5.9E-06 41.7 4.7 65 64-146 2-72 (275)
318 TIGR02822 adh_fam_2 zinc-bindi 91.8 0.58 1.3E-05 40.4 6.7 36 59-104 163-199 (329)
319 cd08230 glucose_DH Glucose deh 91.8 0.42 9E-06 41.6 5.8 91 60-184 171-269 (355)
320 TIGR02825 B4_12hDH leukotriene 91.6 0.86 1.9E-05 39.0 7.6 94 59-183 136-236 (325)
321 cd08300 alcohol_DH_class_III c 91.6 1.9 4.1E-05 37.8 9.8 96 59-184 184-288 (368)
322 PRK07889 enoyl-(acyl carrier p 91.5 6.3 0.00014 32.5 12.5 78 61-146 6-95 (256)
323 PF06859 Bin3: Bicoid-interact 91.4 0.28 6E-06 35.6 3.5 22 163-184 23-44 (110)
324 cd08277 liver_alcohol_DH_like 91.0 1.8 4E-05 37.8 9.2 95 59-183 182-285 (365)
325 PRK05476 S-adenosyl-L-homocyst 91.0 2.3 5E-05 38.5 9.7 125 60-227 210-343 (425)
326 PRK06079 enoyl-(acyl carrier p 90.8 8.1 0.00018 31.7 12.5 77 61-145 6-92 (252)
327 cd08261 Zn_ADH7 Alcohol dehydr 90.7 1.9 4.1E-05 37.0 8.9 94 59-182 157-256 (337)
328 PLN02494 adenosylhomocysteinas 90.7 5.1 0.00011 36.7 11.7 127 57-227 249-387 (477)
329 TIGR01202 bchC 2-desacetyl-2-h 90.7 0.69 1.5E-05 39.6 6.0 86 61-184 144-231 (308)
330 PF02254 TrkA_N: TrkA-N domain 90.5 1 2.2E-05 32.4 6.0 90 70-186 4-98 (116)
331 KOG3201|consensus 90.5 0.61 1.3E-05 36.5 4.8 119 61-201 29-158 (201)
332 cd08294 leukotriene_B4_DH_like 90.3 2 4.3E-05 36.5 8.6 93 59-182 141-239 (329)
333 KOG0022|consensus 90.3 1 2.2E-05 38.9 6.5 74 59-142 190-268 (375)
334 PRK07806 short chain dehydroge 90.2 4.1 9E-05 33.1 10.1 112 62-182 6-132 (248)
335 KOG0023|consensus 90.2 1.9 4.2E-05 37.3 8.1 94 60-185 180-280 (360)
336 COG0604 Qor NADPH:quinone redu 90.2 3.5 7.6E-05 35.8 10.0 98 59-186 140-243 (326)
337 TIGR02622 CDP_4_6_dhtase CDP-g 90.1 8.9 0.00019 33.2 12.6 73 61-145 3-84 (349)
338 PHA01634 hypothetical protein 90.1 0.44 9.6E-06 35.7 3.7 34 61-104 28-61 (156)
339 TIGR00936 ahcY adenosylhomocys 90.1 8 0.00017 34.8 12.3 126 57-227 190-326 (406)
340 PF07757 AdoMet_MTase: Predict 90.0 0.26 5.7E-06 35.6 2.3 33 61-104 58-90 (112)
341 PF01861 DUF43: Protein of unk 89.9 3.6 7.9E-05 34.2 9.2 97 61-187 44-151 (243)
342 PF05206 TRM13: Methyltransfer 89.8 0.66 1.4E-05 39.1 5.0 52 49-104 6-57 (259)
343 cd08301 alcohol_DH_plants Plan 89.6 3 6.4E-05 36.5 9.3 97 59-185 185-290 (369)
344 cd08231 MDR_TM0436_like Hypoth 89.5 4.1 8.9E-05 35.3 10.1 99 57-182 173-278 (361)
345 cd08293 PTGR2 Prostaglandin re 89.2 2.2 4.7E-05 36.7 8.0 92 59-182 150-252 (345)
346 PRK06196 oxidoreductase; Provi 89.2 5.7 0.00012 33.9 10.6 77 61-146 25-109 (315)
347 KOG1562|consensus 89.1 2.2 4.8E-05 36.6 7.6 121 61-204 121-260 (337)
348 cd08278 benzyl_alcohol_DH Benz 89.1 2.6 5.6E-05 36.9 8.5 94 59-182 184-283 (365)
349 cd05285 sorbitol_DH Sorbitol d 89.0 2.8 6E-05 36.1 8.6 94 59-183 160-264 (343)
350 cd08265 Zn_ADH3 Alcohol dehydr 88.9 2 4.3E-05 37.9 7.7 100 59-183 201-306 (384)
351 PRK09987 dTDP-4-dehydrorhamnos 88.6 5.9 0.00013 33.7 10.2 63 64-146 2-64 (299)
352 cd08263 Zn_ADH10 Alcohol dehyd 88.2 2.4 5.2E-05 37.0 7.7 97 59-183 185-286 (367)
353 PRK07578 short chain dehydroge 88.1 11 0.00024 29.5 11.1 100 64-182 2-109 (199)
354 PRK05993 short chain dehydroge 88.0 8.8 0.00019 32.0 10.8 76 62-146 4-86 (277)
355 cd08236 sugar_DH NAD(P)-depend 87.9 4.1 8.8E-05 35.0 8.9 95 59-183 157-257 (343)
356 TIGR00692 tdh L-threonine 3-de 87.8 3 6.6E-05 35.8 8.0 96 59-183 159-260 (340)
357 TIGR00561 pntA NAD(P) transhyd 87.7 2.6 5.6E-05 39.0 7.7 34 61-104 163-197 (511)
358 cd08295 double_bond_reductase_ 87.6 3 6.6E-05 35.9 7.9 93 59-183 149-250 (338)
359 cd08240 6_hydroxyhexanoate_dh_ 87.5 4.2 9.2E-05 35.0 8.8 95 59-182 173-272 (350)
360 PLN02178 cinnamyl-alcohol dehy 87.5 1.4 3E-05 39.0 5.7 90 60-183 177-272 (375)
361 KOG2920|consensus 87.3 0.59 1.3E-05 39.6 3.1 36 59-104 114-149 (282)
362 TIGR03589 PseB UDP-N-acetylglu 87.2 14 0.0003 31.8 11.7 73 62-146 4-84 (324)
363 cd08286 FDH_like_ADH2 formalde 87.1 4.5 9.7E-05 34.8 8.7 93 59-182 164-264 (345)
364 PRK05786 fabG 3-ketoacyl-(acyl 86.7 13 0.00029 29.8 10.9 115 61-184 4-135 (238)
365 cd05281 TDH Threonine dehydrog 86.7 3.8 8.2E-05 35.3 8.0 95 59-183 161-261 (341)
366 PRK08594 enoyl-(acyl carrier p 86.6 17 0.00036 30.0 13.5 77 61-145 6-96 (257)
367 PRK07326 short chain dehydroge 86.2 11 0.00023 30.4 10.0 77 61-146 5-92 (237)
368 cd08279 Zn_ADH_class_III Class 86.2 4.5 9.7E-05 35.2 8.3 95 59-182 180-280 (363)
369 PRK06523 short chain dehydroge 86.1 17 0.00037 29.7 12.3 76 61-145 8-86 (260)
370 COG1255 Uncharacterized protei 85.9 7.4 0.00016 28.6 7.7 93 63-189 15-107 (129)
371 PRK08265 short chain dehydroge 85.7 19 0.0004 29.7 12.1 77 61-146 5-90 (261)
372 PLN02989 cinnamyl-alcohol dehy 85.1 21 0.00046 30.3 11.8 72 61-146 4-87 (325)
373 PF07091 FmrO: Ribosomal RNA m 85.0 0.67 1.5E-05 38.7 2.3 40 56-104 100-139 (251)
374 PRK07984 enoyl-(acyl carrier p 84.9 21 0.00046 29.6 13.1 78 61-146 5-94 (262)
375 cd08291 ETR_like_1 2-enoyl thi 84.9 6.8 0.00015 33.4 8.6 92 61-184 142-242 (324)
376 COG2384 Predicted SAM-dependen 84.8 21 0.00045 29.4 11.1 110 58-200 13-134 (226)
377 PRK05396 tdh L-threonine 3-deh 84.7 5.7 0.00012 34.1 8.1 97 60-184 162-263 (341)
378 PRK08415 enoyl-(acyl carrier p 84.4 23 0.0005 29.6 12.3 78 61-146 4-93 (274)
379 PRK06505 enoyl-(acyl carrier p 84.3 23 0.00049 29.5 12.3 78 61-146 6-95 (271)
380 COG2910 Putative NADH-flavin r 84.3 6.5 0.00014 31.5 7.4 65 69-146 6-72 (211)
381 PRK06182 short chain dehydroge 84.3 14 0.00031 30.5 10.2 76 62-146 3-84 (273)
382 PRK07454 short chain dehydroge 84.1 17 0.00037 29.3 10.4 76 61-145 5-92 (241)
383 PRK01747 mnmC bifunctional tRN 84.0 3 6.5E-05 39.8 6.6 106 62-183 58-205 (662)
384 PLN02702 L-idonate 5-dehydroge 83.9 9.3 0.0002 33.2 9.2 99 59-183 179-284 (364)
385 KOG2352|consensus 83.8 4.3 9.4E-05 37.0 7.0 128 61-201 295-435 (482)
386 PRK08159 enoyl-(acyl carrier p 83.8 24 0.00052 29.4 12.8 78 61-146 9-98 (272)
387 PLN02240 UDP-glucose 4-epimera 83.7 27 0.00059 30.0 12.4 72 62-145 5-90 (352)
388 PF01555 N6_N4_Mtase: DNA meth 83.7 0.93 2E-05 36.4 2.6 35 59-104 189-223 (231)
389 PF10237 N6-adenineMlase: Prob 83.7 19 0.00041 28.1 11.0 124 61-214 25-149 (162)
390 cd08284 FDH_like_2 Glutathione 83.6 3.7 8E-05 35.2 6.5 93 59-182 165-264 (344)
391 cd05279 Zn_ADH1 Liver alcohol 83.3 11 0.00023 33.0 9.3 95 59-183 181-284 (365)
392 KOG0822|consensus 83.3 1.6 3.4E-05 40.3 4.0 95 63-183 369-477 (649)
393 cd05286 QOR2 Quinone oxidoredu 83.3 7.7 0.00017 32.2 8.2 94 59-182 134-233 (320)
394 PRK07576 short chain dehydroge 83.2 24 0.00053 29.0 11.3 76 61-145 8-95 (264)
395 cd08296 CAD_like Cinnamyl alco 83.2 7.8 0.00017 33.2 8.3 93 59-183 161-258 (333)
396 PTZ00075 Adenosylhomocysteinas 83.2 15 0.00031 33.8 10.2 126 60-227 252-386 (476)
397 PLN02657 3,8-divinyl protochlo 83.2 31 0.00067 30.6 12.3 75 61-145 59-145 (390)
398 PRK06603 enoyl-(acyl carrier p 83.1 25 0.00053 29.0 12.7 77 61-145 7-95 (260)
399 cd08297 CAD3 Cinnamyl alcohol 83.0 9.8 0.00021 32.6 8.9 96 59-183 163-264 (341)
400 PRK05693 short chain dehydroge 82.9 25 0.00055 29.0 11.1 74 64-146 3-82 (274)
401 PRK07370 enoyl-(acyl carrier p 82.6 26 0.00056 28.9 12.2 78 61-146 5-97 (258)
402 cd08256 Zn_ADH2 Alcohol dehydr 82.5 9.7 0.00021 32.8 8.7 96 59-182 172-272 (350)
403 PRK06181 short chain dehydroge 82.5 17 0.00038 29.7 9.9 75 63-146 2-88 (263)
404 cd08287 FDH_like_ADH3 formalde 82.3 10 0.00022 32.5 8.7 97 59-183 166-267 (345)
405 cd08243 quinone_oxidoreductase 82.3 9.1 0.0002 32.0 8.3 91 59-182 140-236 (320)
406 cd08282 PFDH_like Pseudomonas 82.2 3.7 7.9E-05 36.1 6.0 105 59-182 174-283 (375)
407 cd08235 iditol_2_DH_like L-idi 82.2 8.1 0.00018 33.0 8.0 95 59-183 163-264 (343)
408 PRK08267 short chain dehydroge 82.1 25 0.00054 28.7 10.7 74 64-146 3-87 (260)
409 COG1062 AdhC Zn-dependent alco 82.0 14 0.00031 32.4 9.1 99 59-186 183-287 (366)
410 cd08241 QOR1 Quinone oxidoredu 81.8 9.4 0.0002 31.8 8.2 94 59-183 137-237 (323)
411 PRK12428 3-alpha-hydroxysteroi 81.8 8.9 0.00019 31.3 7.8 83 95-182 10-94 (241)
412 PRK08324 short chain dehydroge 81.7 21 0.00045 34.3 11.3 76 61-145 421-507 (681)
413 PRK07985 oxidoreductase; Provi 81.7 31 0.00067 29.1 12.7 76 61-145 48-137 (294)
414 PRK07814 short chain dehydroge 81.5 21 0.00045 29.4 10.0 76 61-145 9-96 (263)
415 cd05284 arabinose_DH_like D-ar 81.4 15 0.00032 31.3 9.4 95 59-183 165-265 (340)
416 cd08292 ETR_like_2 2-enoyl thi 81.2 14 0.00029 31.2 9.0 94 59-183 137-237 (324)
417 PRK08264 short chain dehydroge 81.2 26 0.00057 28.0 12.1 75 61-146 5-83 (238)
418 PRK06128 oxidoreductase; Provi 81.0 33 0.00071 29.0 13.0 113 61-182 54-189 (300)
419 TIGR00675 dcm DNA-methyltransf 80.9 11 0.00023 32.6 8.2 63 65-146 1-69 (315)
420 cd08264 Zn_ADH_like2 Alcohol d 80.7 7.6 0.00016 33.0 7.3 90 59-183 160-252 (325)
421 PLN02653 GDP-mannose 4,6-dehyd 80.7 32 0.0007 29.5 11.3 74 61-146 5-93 (340)
422 cd08234 threonine_DH_like L-th 80.4 9.7 0.00021 32.4 7.9 93 59-183 157-256 (334)
423 PRK12481 2-deoxy-D-gluconate 3 80.4 24 0.00051 28.9 9.9 77 61-146 7-93 (251)
424 PRK09422 ethanol-active dehydr 80.2 12 0.00026 31.9 8.4 95 59-183 160-260 (338)
425 cd08260 Zn_ADH6 Alcohol dehydr 79.9 12 0.00027 32.0 8.5 93 59-182 163-262 (345)
426 PF03686 UPF0146: Uncharacteri 79.5 5.1 0.00011 29.9 5.0 93 62-189 14-107 (127)
427 PRK11524 putative methyltransf 79.2 1.8 3.9E-05 36.8 2.9 34 60-104 207-240 (284)
428 PRK12744 short chain dehydroge 79.1 33 0.00072 27.9 12.3 77 61-146 7-99 (257)
429 KOG2793|consensus 78.9 10 0.00022 31.7 7.1 33 62-104 87-119 (248)
430 KOG1501|consensus 78.9 1.9 4.2E-05 39.0 3.0 30 64-103 69-98 (636)
431 cd08269 Zn_ADH9 Alcohol dehydr 78.8 14 0.0003 31.0 8.2 96 59-183 127-228 (312)
432 PRK10083 putative oxidoreducta 78.8 14 0.00031 31.5 8.4 96 59-183 158-258 (339)
433 cd08274 MDR9 Medium chain dehy 78.6 6.4 0.00014 33.8 6.2 92 59-182 175-271 (350)
434 PRK06940 short chain dehydroge 78.1 25 0.00054 29.3 9.5 72 64-146 4-86 (275)
435 PRK06997 enoyl-(acyl carrier p 78.0 38 0.00081 27.9 12.1 78 61-146 5-94 (260)
436 PTZ00354 alcohol dehydrogenase 77.9 17 0.00037 30.6 8.6 95 59-183 138-239 (334)
437 PLN02514 cinnamyl-alcohol dehy 77.8 4.4 9.5E-05 35.4 5.0 93 57-183 176-274 (357)
438 PRK06953 short chain dehydroge 77.7 34 0.00073 27.2 12.5 74 64-146 3-80 (222)
439 PRK12742 oxidoreductase; Provi 77.7 34 0.00074 27.3 11.6 74 62-146 6-85 (237)
440 KOG2078|consensus 77.6 1.2 2.5E-05 40.1 1.3 37 57-104 245-281 (495)
441 PLN02695 GDP-D-mannose-3',5'-e 77.6 15 0.00033 32.3 8.4 86 46-145 5-94 (370)
442 cd05288 PGDH Prostaglandin deh 77.4 19 0.00041 30.5 8.7 93 59-183 143-243 (329)
443 cd08232 idonate-5-DH L-idonate 77.2 15 0.00032 31.4 8.1 90 61-183 165-261 (339)
444 PLN02668 indole-3-acetate carb 76.9 2.1 4.5E-05 38.2 2.6 19 62-80 64-82 (386)
445 COG1748 LYS9 Saccharopine dehy 76.8 16 0.00036 32.6 8.2 70 63-146 2-78 (389)
446 cd08255 2-desacetyl-2-hydroxye 76.6 4.2 9.1E-05 33.7 4.4 92 59-183 95-189 (277)
447 COG0451 WcaG Nucleoside-diphos 76.5 43 0.00094 27.9 11.5 70 64-146 2-74 (314)
448 PRK07523 gluconate 5-dehydroge 76.2 26 0.00056 28.5 9.0 77 61-146 9-97 (255)
449 PLN03209 translocon at the inn 75.8 40 0.00088 31.8 10.8 72 60-145 78-168 (576)
450 KOG1197|consensus 75.5 30 0.00065 29.4 8.8 96 59-182 144-243 (336)
451 cd08244 MDR_enoyl_red Possible 75.4 19 0.00041 30.3 8.2 95 59-183 140-240 (324)
452 cd08276 MDR7 Medium chain dehy 75.4 20 0.00044 30.2 8.4 93 59-183 158-258 (336)
453 PRK15181 Vi polysaccharide bio 75.4 53 0.0012 28.4 11.1 71 61-145 14-99 (348)
454 PRK10754 quinone oxidoreductas 75.3 17 0.00036 30.9 7.8 94 59-183 138-238 (327)
455 cd08258 Zn_ADH4 Alcohol dehydr 75.2 31 0.00066 29.2 9.4 98 59-185 162-265 (306)
456 cd08289 MDR_yhfp_like Yhfp put 75.1 25 0.00054 29.7 8.9 94 59-184 144-243 (326)
457 TIGR00006 S-adenosyl-methyltra 75.0 5.4 0.00012 34.4 4.6 28 162-189 218-245 (305)
458 COG0677 WecC UDP-N-acetyl-D-ma 75.0 15 0.00032 33.0 7.3 57 136-197 84-142 (436)
459 KOG3924|consensus 74.6 19 0.00041 32.2 7.8 96 59-181 190-305 (419)
460 cd08266 Zn_ADH_like1 Alcohol d 73.8 24 0.00052 29.7 8.5 95 59-183 164-264 (342)
461 cd08246 crotonyl_coA_red croto 73.6 30 0.00064 30.4 9.2 36 59-104 191-228 (393)
462 COG0270 Dcm Site-specific DNA 73.5 6.4 0.00014 34.2 4.8 68 63-146 4-77 (328)
463 PRK06180 short chain dehydroge 73.4 52 0.0011 27.3 10.4 76 62-146 4-88 (277)
464 PRK07904 short chain dehydroge 72.8 31 0.00067 28.3 8.6 78 60-145 6-96 (253)
465 PRK13699 putative methylase; P 72.7 3.6 7.7E-05 33.9 2.9 35 59-104 161-195 (227)
466 PLN02572 UDP-sulfoquinovose sy 72.5 57 0.0012 29.5 10.9 73 61-145 46-145 (442)
467 PF05971 Methyltransf_10: Prot 72.5 3.9 8.4E-05 35.2 3.1 69 62-146 103-187 (299)
468 PRK08213 gluconate 5-dehydroge 72.3 41 0.00088 27.4 9.3 76 61-145 11-98 (259)
469 PRK00050 16S rRNA m(4)C1402 me 71.9 7.1 0.00015 33.6 4.6 28 162-189 214-241 (296)
470 cd08253 zeta_crystallin Zeta-c 71.9 39 0.00084 28.0 9.2 96 59-182 142-241 (325)
471 PRK07109 short chain dehydroge 71.8 39 0.00086 29.2 9.4 77 61-146 7-95 (334)
472 PRK03659 glutathione-regulated 71.7 22 0.00047 33.7 8.2 95 64-186 402-500 (601)
473 TIGR01472 gmd GDP-mannose 4,6- 71.6 65 0.0014 27.6 10.8 71 64-146 2-88 (343)
474 cd08245 CAD Cinnamyl alcohol d 71.5 23 0.00049 30.1 7.8 91 59-183 160-255 (330)
475 cd05282 ETR_like 2-enoyl thioe 71.4 33 0.00072 28.8 8.8 94 59-182 136-235 (323)
476 PRK08261 fabG 3-ketoacyl-(acyl 70.7 68 0.0015 28.8 11.0 76 61-145 209-293 (450)
477 PLN02260 probable rhamnose bio 69.9 1E+02 0.0023 29.4 12.8 76 61-146 5-90 (668)
478 TIGR01832 kduD 2-deoxy-D-gluco 69.9 56 0.0012 26.3 10.1 77 61-146 4-90 (248)
479 PRK06198 short chain dehydroge 69.8 50 0.0011 26.8 9.2 77 61-146 5-94 (260)
480 PRK06138 short chain dehydroge 69.4 58 0.0013 26.2 9.6 77 61-146 4-91 (252)
481 PRK12384 sorbitol-6-phosphate 69.4 60 0.0013 26.4 10.9 75 62-145 2-90 (259)
482 PRK07666 fabG 3-ketoacyl-(acyl 69.0 58 0.0013 26.1 9.5 76 62-146 7-94 (239)
483 KOG1227|consensus 68.9 1.5 3.2E-05 37.7 -0.2 35 61-104 194-228 (351)
484 PLN02427 UDP-apiose/xylose syn 68.6 81 0.0018 27.6 11.8 71 62-145 14-95 (386)
485 PRK08219 short chain dehydroge 68.5 56 0.0012 25.7 10.4 72 63-146 4-81 (227)
486 COG1087 GalE UDP-glucose 4-epi 68.4 38 0.00083 29.3 8.1 82 64-157 2-88 (329)
487 PRK05650 short chain dehydroge 68.4 66 0.0014 26.4 10.7 74 64-146 2-87 (270)
488 PRK08217 fabG 3-ketoacyl-(acyl 68.3 34 0.00075 27.5 7.9 76 61-145 4-91 (253)
489 PRK06701 short chain dehydroge 68.3 71 0.0015 26.8 12.3 76 61-145 45-133 (290)
490 PRK10537 voltage-gated potassi 67.7 52 0.0011 29.5 9.3 95 64-186 242-338 (393)
491 TIGR01751 crot-CoA-red crotony 67.5 46 0.001 29.4 9.1 36 59-104 187-224 (398)
492 PRK05884 short chain dehydroge 67.2 64 0.0014 25.8 10.2 72 64-145 2-78 (223)
493 PRK05717 oxidoreductase; Valid 67.0 68 0.0015 26.0 12.0 77 61-146 9-94 (255)
494 PF02636 Methyltransf_28: Puta 66.9 16 0.00034 30.3 5.7 41 62-104 19-60 (252)
495 PLN02253 xanthoxin dehydrogena 66.0 75 0.0016 26.2 12.4 77 61-146 17-104 (280)
496 PF03492 Methyltransf_7: SAM d 65.9 4.8 0.00011 35.1 2.4 117 60-185 15-184 (334)
497 PRK12829 short chain dehydroge 65.8 23 0.00051 28.8 6.5 77 61-146 10-96 (264)
498 PF01795 Methyltransf_5: MraW 65.8 4.4 9.5E-05 35.0 2.1 29 161-189 218-246 (310)
499 PRK08993 2-deoxy-D-gluconate 3 65.6 72 0.0016 25.9 11.3 76 61-145 9-94 (253)
500 PRK09186 flagellin modificatio 65.5 39 0.00084 27.3 7.8 76 61-145 3-92 (256)
No 1
>KOG4589|consensus
Probab=100.00 E-value=2.8e-51 Score=316.76 Aligned_cols=206 Identities=49% Similarity=0.803 Sum_probs=199.7
Q ss_pred CCCCCchhHhhhccCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCC
Q psy1489 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPK 94 (229)
Q Consensus 15 ~~~~~~~~w~~~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~ 94 (229)
.++++.+.|+.|+..|+|.+.++.++||+|++|||+||+++|.+++|+++|||+||+||.|++.+.++.+ |+
T Consensus 23 ~rs~s~~~wl~Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~--------p~ 94 (232)
T KOG4589|consen 23 YRSKSLHRWLTRQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVN--------PN 94 (232)
T ss_pred cccccHHHHHHHhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhC--------CC
Confidence 5778999999999999999999999999999999999999999999999999999999999999999987 89
Q ss_pred cEEEEEeCCCCCCCCCCeEEecC-CCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHc
Q psy1489 95 GLVLSVDKLPIYPIDGAVVLSKC-DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTY 173 (229)
Q Consensus 95 ~~v~gvD~~~~~~~~~~~~~~~~-D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~ 173 (229)
|.|+|||+.++.+++++.++ ++ |++++.+..+|.+.++...+|+|+|||.|+++|++..||...+++|..++..+...
T Consensus 95 g~v~gVDllh~~p~~Ga~~i-~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~ 173 (232)
T KOG4589|consen 95 GMVLGVDLLHIEPPEGATII-QGNDVTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTL 173 (232)
T ss_pred ceEEEEeeeeccCCCCcccc-cccccCCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999 65 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCCC
Q psy1489 174 SKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229 (229)
Q Consensus 174 LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~~ 229 (229)
++|+|.|++|+|.+.+...+...|...|..|+.+||.+||.+|+|.|+||++|||.
T Consensus 174 ~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~ 229 (232)
T KOG4589|consen 174 LIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFKGN 229 (232)
T ss_pred cCCCcEEEEEEecCCchHHHHHHHHHHhhhcEeeCCccccccccceeeeeeeccCc
Confidence 99999999999999999999999999999999999999999999999999999973
No 2
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-49 Score=316.75 Aligned_cols=203 Identities=44% Similarity=0.787 Sum_probs=196.5
Q ss_pred CCchhHhhhccCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEE
Q psy1489 18 HSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLV 97 (229)
Q Consensus 18 ~~~~~w~~~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v 97 (229)
.+++.|+.+++.|+|++.++.++|++|++|||+||++++.++++|+.|+||||.||+|+++++++++ +.+.|
T Consensus 2 ~~s~~wl~~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~--------~~~~i 73 (205)
T COG0293 2 GSSQRWLAEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLG--------AGGKI 73 (205)
T ss_pred cchHHHHHHhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhC--------CCCcE
Confidence 5678999999999999999999999999999999999999999999999999999999999999987 56679
Q ss_pred EEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC
Q psy1489 98 LSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG 177 (229)
Q Consensus 98 ~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg 177 (229)
+|+|+.||.+++++.++ ++|+++.++...|.+.+....+|+|+|||+|+.+|.+..||...+.++..++..+..+|+||
T Consensus 74 vavDi~p~~~~~~V~~i-q~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~ 152 (205)
T COG0293 74 VAVDILPMKPIPGVIFL-QGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPG 152 (205)
T ss_pred EEEECcccccCCCceEE-eeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCC
Confidence 99999999999999999 99999999999999999888899999999999999999999999999999999999999999
Q ss_pred CEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCCC
Q psy1489 178 ADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229 (229)
Q Consensus 178 G~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~~ 229 (229)
|.|++++|++.+.++++..++++|..|+++||.+||++|.|+|+||++|+++
T Consensus 153 G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~~ 204 (205)
T COG0293 153 GSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKGK 204 (205)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEeccccC
Confidence 9999999999999999999999999999999999999999999999999974
No 3
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=100.00 E-value=4.5e-44 Score=291.39 Aligned_cols=203 Identities=37% Similarity=0.607 Sum_probs=187.4
Q ss_pred CCCchhHhhhccCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcE
Q psy1489 17 DHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGL 96 (229)
Q Consensus 17 ~~~~~~w~~~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~ 96 (229)
+.++.+|+.++..|+|+..++..+|++|++||+.+++.++.+++++.+|||||||||.|++.++++.+ +.++
T Consensus 7 ~~~~~~~~~~~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~--------~~~~ 78 (209)
T PRK11188 7 SASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIG--------DKGR 78 (209)
T ss_pred ccchHHHHHHhhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcC--------CCce
Confidence 66889999999999999999999999999999999999999889999999999999999999999875 5679
Q ss_pred EEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccC
Q psy1489 97 VLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKP 176 (229)
Q Consensus 97 v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp 176 (229)
|+|||+++|.+.+++.++ ++|+++..+.+.+...+.++.||+|+||++|...+.+..|......+...++.++.++|+|
T Consensus 79 V~aVDi~~~~~~~~v~~i-~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp 157 (209)
T PRK11188 79 VIACDILPMDPIVGVDFL-QGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP 157 (209)
T ss_pred EEEEecccccCCCCcEEE-ecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999998888899999 9999998877777777778899999999998888877666666666678899999999999
Q ss_pred CCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCC
Q psy1489 177 GADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228 (229)
Q Consensus 177 gG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~ 228 (229)
||.|++++|.+....++++.++.+|..+++.||.+||..|.|+|+||+||+|
T Consensus 158 GG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~~~ 209 (209)
T PRK11188 158 GGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKL 209 (209)
T ss_pred CCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEEEeecccC
Confidence 9999999999999999999999999999999999999999999999999986
No 4
>KOG1099|consensus
Probab=100.00 E-value=3.9e-43 Score=279.31 Aligned_cols=200 Identities=34% Similarity=0.559 Sum_probs=184.7
Q ss_pred hccCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC
Q psy1489 26 RQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI 105 (229)
Q Consensus 26 ~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~ 105 (229)
++.+|-|++.+++++||+|++|||+++++.|++++.-.+|+|||++||.|+++|++++........+...++++||+++|
T Consensus 6 kDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M 85 (294)
T KOG1099|consen 6 KDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM 85 (294)
T ss_pred chhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC
Confidence 45689999999999999999999999999999998889999999999999999999885311001111225999999999
Q ss_pred CCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 106 YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 106 ~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
.+++++..+ ++||+.+.+.+.|.+++.+++.|+|+||++|+++|+|++|.+...+++.++|..+..+|+|||.||-|+|
T Consensus 86 aPI~GV~ql-q~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 86 APIEGVIQL-QGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred CccCceEEe-ecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489 186 DGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226 (229)
Q Consensus 186 ~~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~ 226 (229)
.+.+...+...|+.+|.+|.+.||.+||++|.|.|+||.+|
T Consensus 165 Rg~~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~ 205 (294)
T KOG1099|consen 165 RGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGY 205 (294)
T ss_pred ccCchHHHHHHHHHHhhceeeecCCccccccceeeeeeccc
Confidence 99999999999999999999999999999999999999998
No 5
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=100.00 E-value=2.8e-38 Score=252.02 Aligned_cols=177 Identities=43% Similarity=0.731 Sum_probs=152.6
Q ss_pred ccchhhhhhHhhhhhcCccCCC--CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCC
Q psy1489 41 YRCRSAFKLLEIDSKIKFLRPG--LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD 118 (229)
Q Consensus 41 ~~~r~~~kl~~i~~~~~~~~~g--~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D 118 (229)
|++|+++||.|++++|.++.++ .+||||||+||+|+++++++.+ +.++|+|+|+.++.+.+++..+ ++|
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~--------~~~~v~avDl~~~~~~~~~~~i-~~d 71 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGG--------PAGRVVAVDLGPMDPLQNVSFI-QGD 71 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTT--------TEEEEEEEESSSTGS-TTEEBT-TGG
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeeccc--------ccceEEEEeccccccccceeee-ecc
Confidence 7899999999999999977764 9999999999999999998863 4679999999998888899999 999
Q ss_pred CCChhHHHHHHHHhCC--CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHH
Q psy1489 119 FTQPDIQDRLVTILKD--DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES 196 (229)
Q Consensus 119 ~~~~~~~~~i~~~~~~--~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~ 196 (229)
+++......+...+.+ +.+|+|+||++++++|.+..|+...++++..++..+..+|+|||+||+++|......++++.
T Consensus 72 ~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~ 151 (181)
T PF01728_consen 72 ITNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYL 151 (181)
T ss_dssp GEEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHH
T ss_pred cchhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHH
Confidence 9988777777776654 78999999999999999999999999999999999999999999999999998777799999
Q ss_pred HHhhCCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489 197 ITRFYSQVKILKPPSSRSHSAELFLLGRGF 226 (229)
Q Consensus 197 l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~ 226 (229)
++.+|+.|.++||.+||++|+|+|+||+||
T Consensus 152 l~~~F~~v~~~Kp~~sr~~s~E~Ylv~~~f 181 (181)
T PF01728_consen 152 LKRCFSKVKIVKPPSSRSESSEEYLVCRGF 181 (181)
T ss_dssp HHHHHHHEEEEE-TTSBTTCBEEEEESEEE
T ss_pred HHhCCeEEEEEECcCCCCCccEEEEEEcCC
Confidence 999999999999999999999999999997
No 6
>KOG1098|consensus
Probab=100.00 E-value=3.7e-35 Score=260.60 Aligned_cols=194 Identities=36% Similarity=0.505 Sum_probs=183.5
Q ss_pred ccCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC
Q psy1489 27 QFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY 106 (229)
Q Consensus 27 ~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~ 106 (229)
.+.|.||+.|++.||++|++|||++|+.+|.++.++..||||||+||+|.+++++.++ ..+.|+|||+-|+.
T Consensus 10 ~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~p--------v~slivGvDl~pik 81 (780)
T KOG1098|consen 10 GRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMP--------VGSLIVGVDLVPIK 81 (780)
T ss_pred ccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCC--------CCceEEEeeeeecc
Confidence 4689999999999999999999999999999999999999999999999999999986 56789999999999
Q ss_pred CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 107 PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 107 ~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
+++++..+ +.||+...+...+...+.--+.|+|++|++|++.+.|..|.+....+...+++.|...|+.||+|+.++|.
T Consensus 82 p~~~c~t~-v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr 160 (780)
T KOG1098|consen 82 PIPNCDTL-VEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR 160 (780)
T ss_pred cCCccchh-hhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc
Confidence 99999888 99999888777777777777789999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCCC
Q psy1489 187 GRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229 (229)
Q Consensus 187 ~~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~~ 229 (229)
..+...++..+.+.|..|...||++||+.|.|+|+||.||++|
T Consensus 161 s~dy~~ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~~l~P 203 (780)
T KOG1098|consen 161 SEDYNGLLRVFGQLFKKVEATKPAASRSESAEIFVVCLGYLAP 203 (780)
T ss_pred CCcchHHHHHHHHHHHHHHhcCChhhhhhccceeeeeecccCc
Confidence 9999999999999999999999999999999999999999975
No 7
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=100.00 E-value=1.4e-31 Score=214.75 Aligned_cols=188 Identities=40% Similarity=0.701 Sum_probs=165.8
Q ss_pred cHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCC
Q psy1489 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPID 109 (229)
Q Consensus 30 d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~ 109 (229)
|.|++.++++++++|.+|++.++++++..+++|.+|||+|||||+++..++++.. +.++|+|+|++++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~--------~~~~v~~vDis~~~~~~ 72 (188)
T TIGR00438 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVG--------GKGRVIAVDLQPMKPIE 72 (188)
T ss_pred CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhC--------CCceEEEEeccccccCC
Confidence 4678888999999999999999999999999999999999999999999998764 45789999999955556
Q ss_pred CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489 110 GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189 (229)
Q Consensus 110 ~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~ 189 (229)
++.++ ++|+.+......+.+.++++.||+|++|+++...|.+..++....+....++..+.++|+|||++++.++....
T Consensus 73 ~i~~~-~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~ 151 (188)
T TIGR00438 73 NVDFI-RGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEE 151 (188)
T ss_pred CceEE-EeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCcc
Confidence 78888 89998866555555556777899999998877777787888777777788999999999999999998888888
Q ss_pred hHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489 190 RPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGF 226 (229)
Q Consensus 190 ~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~ 226 (229)
..+++..++..|..+++.+|..||..|+|.|+||++|
T Consensus 152 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T TIGR00438 152 IDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAKRF 188 (188)
T ss_pred HHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEecC
Confidence 8999999988999999999999999999999999987
No 8
>KOG3673|consensus
Probab=99.72 E-value=2.4e-17 Score=145.57 Aligned_cols=192 Identities=20% Similarity=0.287 Sum_probs=146.3
Q ss_pred hhccCcHHHHHHHhcCccchhhhhhHhhhhhcCcc-C-C----C-----------CeeEeecCCCCchHHHHHHHHhccC
Q psy1489 25 KRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFL-R-P----G-----------LKVLDCGAAPGSWSQVAVKLVNSHG 87 (229)
Q Consensus 25 ~~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~-~-~----g-----------~~VLDlGcGpG~~s~~la~~~~~~~ 87 (229)
.|.++.+|- ..+..-+..|++.|+..++..++.+ . | | ....|+|+|||+|+.|++.+-.+
T Consensus 215 ARtRaNPyE-tIrs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~w-- 291 (845)
T KOG3673|consen 215 ARTRANPYE-TIRSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKFW-- 291 (845)
T ss_pred HhhcCChHH-HHHHHHHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhhh--
Confidence 356788884 4456668899999999887776531 1 0 1 24568999999999999876532
Q ss_pred CCCCCCCcEEEEEeCCC----------------CCCCCCCeEEecCCCCChhHHHHHHHHhC----CCCccEEEeCCCCC
Q psy1489 88 YDSKQPKGLVLSVDKLP----------------IYPIDGAVVLSKCDFTQPDIQDRLVTILK----DDKLDVVLSDMAPN 147 (229)
Q Consensus 88 ~~~~~~~~~v~gvD~~~----------------~~~~~~~~~~~~~D~~~~~~~~~i~~~~~----~~~~D~V~sd~~~~ 147 (229)
.++-.|.-+.- .....++. ..||++++..++.+.+++. +..+++.++|+.+.
T Consensus 292 ------~AKGFGfTL~G~nDFKLekF~aaS~e~FetfYG~k--~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFS 363 (845)
T KOG3673|consen 292 ------NAKGFGFTLAGKNDFKLEKFTAASQEFFETFYGTK--DDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFS 363 (845)
T ss_pred ------ccccceeEeccCCccchhhhhhcCHHhhhcccccc--CCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCcc
Confidence 22334443321 01122332 2689999887776666543 35689999999999
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--CChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEecc
Q psy1489 148 ATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRG 225 (229)
Q Consensus 148 ~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~ 225 (229)
+.|..+.+.+.+-++.+..+-.+...+++||.|++++|.- +...-++++|+-||..|.++||.+||+.+||.|+||+|
T Consensus 364 VEGQeNiQEILSKqLyLCQfL~aL~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKg 443 (845)
T KOG3673|consen 364 VEGQENIQEILSKQLYLCQFLVALCIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKG 443 (845)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHheeeecCCeEEEeeecccCcchhhHHHHHHHHHHHhhcccCCCCCCCCCceeEEecc
Confidence 9998888888888888888888999999999999999873 55688999999999999999999999999999999999
Q ss_pred CC
Q psy1489 226 FK 227 (229)
Q Consensus 226 ~~ 227 (229)
.+
T Consensus 444 lr 445 (845)
T KOG3673|consen 444 LR 445 (845)
T ss_pred hh
Confidence 87
No 9
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=5.7e-16 Score=127.45 Aligned_cols=110 Identities=22% Similarity=0.333 Sum_probs=86.3
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC----------CCCCeEEecCCCCChhHHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP----------IDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~----------~~~~~~~~~~D~~~~~~~~~i 128 (229)
.+|.+|||+|||||-++..+++.. +.++|+|+|+|+ |.. ..+++++ .+|+.+.+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~---------g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv-~~dAe~LP----- 114 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSV---------GTGEVVGLDISESMLEVAREKLKKKGVQNVEFV-VGDAENLP----- 114 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhc---------CCceEEEEECCHHHHHHHHHHhhccCccceEEE-EechhhCC-----
Confidence 379999999999999999999987 468999999997 421 2237888 99988742
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~ 198 (229)
+++++||+|.+.. |+++.. ....+|+++.|+|||||++++-.+..+....+...+.
T Consensus 115 ---f~D~sFD~vt~~f-----glrnv~------d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~ 170 (238)
T COG2226 115 ---FPDNSFDAVTISF-----GLRNVT------DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYI 170 (238)
T ss_pred ---CCCCccCEEEeee-----hhhcCC------CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHH
Confidence 8899999999965 334433 3568999999999999999988787765544444443
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.64 E-value=1.5e-16 Score=131.42 Aligned_cols=116 Identities=24% Similarity=0.399 Sum_probs=74.9
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
.++|.+|||+|||||.++..++++.+ +.++|+|+|+|+ |. ...+++++ ++|..+.+
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~--------~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v-~~da~~lp---- 111 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVG--------PNGKVVGVDISPGMLEVARKKLKREGLQNIEFV-QGDAEDLP---- 111 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS-----------EEEEEES-HHHHHHHHHHHHHTT--SEEEE-E-BTTB------
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCC--------CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEE-EcCHHHhc----
Confidence 46789999999999999999998876 678999999997 42 23478899 99998843
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCC
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~ 202 (229)
+++++||+|++.. |+++.. ....+++++.|+|||||++++-.|..+....+...+..+|.
T Consensus 112 ----~~d~sfD~v~~~f-----glrn~~------d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~ 171 (233)
T PF01209_consen 112 ----FPDNSFDAVTCSF-----GLRNFP------DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFK 171 (233)
T ss_dssp ----S-TT-EEEEEEES------GGG-S------SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---
T ss_pred ----CCCCceeEEEHHh-----hHHhhC------CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeec
Confidence 6789999999955 344332 24578999999999999999877877764444444444443
No 11
>PTZ00146 fibrillarin; Provisional
Probab=99.57 E-value=2.1e-13 Score=115.14 Aligned_cols=138 Identities=23% Similarity=0.247 Sum_probs=93.9
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----C----CCCCCeEEecCCCCChhHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----Y----PIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----~----~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
++++++|||||||||.|+.++++.++ +.++|+|||+++ | . ..+++.++ .+|++.+.. +.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG--------~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I-~~Da~~p~~---y~ 197 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVG--------PEGVVYAVEFSHRSGRDLTNMAKKRPNIVPI-IEDARYPQK---YR 197 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhC--------CCCEEEEEECcHHHHHHHHHHhhhcCCCEEE-ECCccChhh---hh
Confidence 57899999999999999999999987 678999999996 1 1 23578888 899876431 11
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec-----CCCChHHH----HHHHHhh
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW-----DGRNRPQL----EESITRF 200 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~-----~~~~~~~~----~~~l~~~ 200 (229)
.....||+|++|++. .|+ ...++.++.++|||||.|++++- .++..+++ ++.|+..
T Consensus 198 --~~~~~vDvV~~Dva~-------pdq------~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~ 262 (293)
T PTZ00146 198 --MLVPMVDVIFADVAQ-------PDQ------ARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKE 262 (293)
T ss_pred --cccCCCCEEEEeCCC-------cch------HHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHc
Confidence 123479999999852 222 23445568999999999998542 22333343 3556665
Q ss_pred -CCeeEEEcCCCCCCCCceEEEEecc
Q psy1489 201 -YSQVKILKPPSSRSHSAELFLLGRG 225 (229)
Q Consensus 201 -F~~v~~~kp~~sr~~s~E~Y~v~~~ 225 (229)
|..++.+.. ..-+.....+|++.
T Consensus 263 GF~~~e~v~L--~Py~~~h~~v~~~~ 286 (293)
T PTZ00146 263 GLKPKEQLTL--EPFERDHAVVIGVY 286 (293)
T ss_pred CCceEEEEec--CCccCCcEEEEEEE
Confidence 887777653 22244445555543
No 12
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=4.2e-14 Score=116.63 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=107.7
Q ss_pred hcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCCh
Q psy1489 55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQP 122 (229)
Q Consensus 55 ~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~ 122 (229)
.|.......+|||||||.|..+..++++. +..+|+|||+++ +. +. ++++++ ++|+.+
T Consensus 38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~---------~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~-~~Di~~- 106 (248)
T COG4123 38 AFAPVPKKGRILDLGAGNGALGLLLAQRT---------EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI-EADIKE- 106 (248)
T ss_pred hhcccccCCeEEEecCCcCHHHHHHhccC---------CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEe-hhhHHH-
Confidence 44444557899999999999999999986 448999999997 21 11 357788 888776
Q ss_pred hHHHHHHHHhCCCCccEEEeCCCCCCCCCC-cccHHHH------HHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHH
Q psy1489 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMR-EMDHDLI------TQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195 (229)
Q Consensus 123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~-~~d~~~~------~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~ 195 (229)
+.......+||+|+||++....+.. ..+.... .-..++.++.+.+.|||||.+.+ +.......++++
T Consensus 107 -----~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-V~r~erl~ei~~ 180 (248)
T COG4123 107 -----FLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-VHRPERLAEIIE 180 (248)
T ss_pred -----hhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-EecHHHHHHHHH
Confidence 2233444579999999986554443 2222111 11345788999999999999998 566677889999
Q ss_pred HHHhh-CCeeEEEcCCCCCCCCceEEEEeccCC
Q psy1489 196 SITRF-YSQVKILKPPSSRSHSAELFLLGRGFK 227 (229)
Q Consensus 196 ~l~~~-F~~v~~~kp~~sr~~s~E~Y~v~~~~~ 227 (229)
.++++ |. .+..++..+|.+..-..++-.+.|
T Consensus 181 ~l~~~~~~-~k~i~~V~p~~~k~A~~vLv~~~k 212 (248)
T COG4123 181 LLKSYNLE-PKRIQFVYPKIGKAANRVLVEAIK 212 (248)
T ss_pred HHHhcCCC-ceEEEEecCCCCCcceEEEEEEec
Confidence 99885 43 344446666766555555555444
No 13
>KOG3674|consensus
Probab=99.54 E-value=2.2e-14 Score=125.60 Aligned_cols=188 Identities=16% Similarity=0.163 Sum_probs=128.9
Q ss_pred ccchhhhhhHhhhhhcCccC-CCC--eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------
Q psy1489 41 YRCRSAFKLLEIDSKIKFLR-PGL--KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y---------- 106 (229)
Q Consensus 41 ~~~r~~~kl~~i~~~~~~~~-~g~--~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~---------- 106 (229)
....++.|+-|+...|.+.. ++. .-+.||-|||+|...+-..+.+.. .+...-.+=.+.-++|- +
T Consensus 109 ~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s~r-~k~~~~W~W~anTLNPY~E~n~~~~mi~D 187 (696)
T KOG3674|consen 109 NVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMSSR-GKNMSYWKWGANTLNPYFENNSCFDMIID 187 (696)
T ss_pred HHHHHHHHHHHHHHhcCccccccccccceeeecCccHHHHHHHHHHHhcc-CCccceeeeccCccCcccccchHHHHhcc
Confidence 35577889999998987643 443 568999999999877666553211 11111112233444431 0
Q ss_pred -----CCCCCeEEe---cCCCCChhHHHHHHHHh-CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC
Q psy1489 107 -----PIDGAVVLS---KCDFTQPDIQDRLVTIL-KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG 177 (229)
Q Consensus 107 -----~~~~~~~~~---~~D~~~~~~~~~i~~~~-~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg 177 (229)
+.-.-++.+ .||+.+......+.+.+ -.+.+|+|.+|++.++.|.+.-.......+...-...|.+.|+.|
T Consensus 188 Dr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~~~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L~~g 267 (696)
T KOG3674|consen 188 DRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVKLAGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALKLLRRG 267 (696)
T ss_pred chhhhccccceeeCCCCCccHHHHHHHHHHHHHHHhhceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 000122331 34554432222232211 146899999999999999887766555556666777899999999
Q ss_pred CEEEEeecCCC--ChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCCC
Q psy1489 178 ADCLIKIWDGR--NRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229 (229)
Q Consensus 178 G~~v~~~~~~~--~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~~ 229 (229)
|+|++|+|... -...+++.|.-.|+.|+++||.+||++++|.|+||.+|||+
T Consensus 268 G~filKmft~fe~cS~~lmylLnc~F~~Vh~fKPatSk~GnSEvYVvCl~yK~~ 321 (696)
T KOG3674|consen 268 GRFILKMFTFFEKCSRDLMYLLNCNFSSVHAFKPATSKPGNSEVYVVCLGYKDH 321 (696)
T ss_pred CeehHHHHHHHHHhhHHHHHHHHhhHhhhhccccccCCCCCceEEEEecccCCC
Confidence 99999998743 35778888988999999999999999999999999999986
No 14
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.52 E-value=5.4e-14 Score=110.96 Aligned_cols=120 Identities=28% Similarity=0.368 Sum_probs=84.4
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
++.+|||+|||+|.++..++++. +..+|+++|+++. ..++++.++ ..|+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~---------~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~-~~d~~~~------- 93 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRG---------PDAKVTAVDINPDALELAKRNAERNGLENVEVV-QSDLFEA------- 93 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTS---------TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEE-ESSTTTT-------
T ss_pred cCCeEEEecCChHHHHHHHHHhC---------CCCEEEEEcCCHHHHHHHHHHHHhcCccccccc-ccccccc-------
Confidence 57899999999999999999875 5668999999972 123447788 8887762
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEc
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILK 208 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~k 208 (229)
+++.+||+|++|++....+ .........++..+.++|+|||.+++..-.......+ +++.|..+++.+
T Consensus 94 --~~~~~fD~Iv~NPP~~~~~------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~~~ 161 (170)
T PF05175_consen 94 --LPDGKFDLIVSNPPFHAGG------DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEVVA 161 (170)
T ss_dssp --CCTTCEEEEEE---SBTTS------HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EEEE
T ss_pred --ccccceeEEEEccchhccc------ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEEEE
Confidence 4468999999997642111 1123455688999999999999998755444444444 777788888764
No 15
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.52 E-value=2.8e-14 Score=120.05 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=79.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-------------CCCCeEEecCCCCChhH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-------------IDGAVVLSKCDFTQPDI 124 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-------------~~~~~~~~~~D~~~~~~ 124 (229)
++++.+|||+|||+|.++..++++.+ +.++|+|+|+++ |.. .+++.++ .+|+.+.+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~--------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~-~~d~~~lp- 140 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVG--------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWI-EGDATDLP- 140 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEE-EcccccCC-
Confidence 46789999999999999999988765 567999999997 311 2357788 88877632
Q ss_pred HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189 (229)
Q Consensus 125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~ 189 (229)
+++++||+|++.... +..+ ....++.++.++|||||.+++..+..+.
T Consensus 141 -------~~~~sfD~V~~~~~l-----~~~~------d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 141 -------FDDCYFDAITMGYGL-----RNVV------DRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred -------CCCCCEeEEEEeccc-----ccCC------CHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 567889999996643 2221 2357899999999999999988777554
No 16
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.51 E-value=1.9e-13 Score=123.27 Aligned_cols=132 Identities=20% Similarity=0.278 Sum_probs=89.4
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~ 127 (229)
+.++.+|||+|||||+++..+++..+ +.++|+|+|+++. ..+.++.++ .+|+.+..
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~--------~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~-~~D~~~~~---- 314 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLK--------NTGKVVALDIHEHKLKLIEENAKRLGLTNIETK-ALDARKVH---- 314 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE-eCCccccc----
Confidence 35788999999999999999999875 5689999999961 123457788 88877621
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCc-----------ccHHHHHHHHHHHHHHHHHcccCCCEEEEe---ecCCCChHHH
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMRE-----------MDHDLITQLAIAVIRFAVTYSKPGADCLIK---IWDGRNRPQL 193 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~-----------~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~---~~~~~~~~~~ 193 (229)
..++ +.||+|++|++....|... .+......++..++..+.++|||||.++.. ++...+...+
T Consensus 315 --~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv 391 (444)
T PRK14902 315 --EKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVI 391 (444)
T ss_pred --chhc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHH
Confidence 1122 6799999998754444311 111223345668899999999999999853 3333444445
Q ss_pred HHHHHhh--CCeeEE
Q psy1489 194 EESITRF--YSQVKI 206 (229)
Q Consensus 194 ~~~l~~~--F~~v~~ 206 (229)
.+.++.+ |+.+.+
T Consensus 392 ~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 392 EAFLEEHPEFELVPL 406 (444)
T ss_pred HHHHHhCCCcEEecc
Confidence 5566652 544443
No 17
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.50 E-value=3.6e-13 Score=121.06 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=101.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~ 127 (229)
.++|++|||+|||||+.+.++++.++ +.++|+|+|+++ + ..+.++.++ .+|..+....
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~--------~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~-~~D~~~~~~~-- 318 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMG--------DQGEIWAVDRSASRLKKLQENAQRLGLKSIKIL-AADSRNLLEL-- 318 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhC--------CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEE-eCChhhcccc--
Confidence 35789999999999999999999875 567999999996 2 123457777 8887652100
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcc--c---------HHHHHHHHHHHHHHHHHcccCCCEEEEeecC---CCChHHH
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREM--D---------HDLITQLAIAVIRFAVTYSKPGADCLIKIWD---GRNRPQL 193 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~--d---------~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~---~~~~~~~ 193 (229)
. ....+.||.|++|+++...|.... + ......++..+|..+.++|||||+++..+.. ..+...+
T Consensus 319 -~-~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v 396 (434)
T PRK14901 319 -K-PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQI 396 (434)
T ss_pred -c-ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH
Confidence 0 012467999999998654444211 1 1122334678999999999999999865432 3444555
Q ss_pred HHHHHhhCCeeEEEcCC---CCCCCCceEEEEeccC
Q psy1489 194 EESITRFYSQVKILKPP---SSRSHSAELFLLGRGF 226 (229)
Q Consensus 194 ~~~l~~~F~~v~~~kp~---~sr~~s~E~Y~v~~~~ 226 (229)
.+.++.+ ..+++..+. ..+.+..+.+|+|+=.
T Consensus 397 ~~~l~~~-~~~~~~~~~~~~~P~~~~~dGfF~a~l~ 431 (434)
T PRK14901 397 EQFLARH-PDWKLEPPKQKIWPHRQDGDGFFMAVLR 431 (434)
T ss_pred HHHHHhC-CCcEecCCCCccCCCCCCCCcEEEEEEE
Confidence 5666653 333333222 2234567899998643
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.50 E-value=2.8e-13 Score=111.70 Aligned_cols=104 Identities=17% Similarity=0.267 Sum_probs=76.4
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
++++.+|||+|||+|.++..+++..+ +.++|+|+|+++ +. ..++++++ .+|+.+..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~~---- 109 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVG--------PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELV-HGNAMELP---- 109 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEE-EechhcCC----
Confidence 46789999999999999999998875 567999999996 21 23467777 88876521
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCCh
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~ 190 (229)
+++++||+|+++.... ..+ ....++.++.++|+|||.+++.....+..
T Consensus 110 ----~~~~~fD~V~~~~~l~-----~~~------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 157 (231)
T TIGR02752 110 ----FDDNSFDYVTIGFGLR-----NVP------DYMQVLREMYRVVKPGGKVVCLETSQPTI 157 (231)
T ss_pred ----CCCCCccEEEEecccc-----cCC------CHHHHHHHHHHHcCcCeEEEEEECCCCCC
Confidence 4567899999965431 111 12367888999999999998765544443
No 19
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=9.9e-14 Score=116.26 Aligned_cols=120 Identities=21% Similarity=0.271 Sum_probs=83.0
Q ss_pred CcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-
Q psy1489 29 ADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY- 106 (229)
Q Consensus 29 ~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~- 106 (229)
.+.|.+.+.. +.+....+++ .+. ..++.+|||+|||+|.++..++++. |.++|+|+|+++ |.
T Consensus 4 ~~~y~~~~~~---~~~~~~~ll~---~l~-~~~~~~vLDlGcG~G~~~~~l~~~~---------p~~~v~gvD~s~~~~~ 67 (255)
T PRK14103 4 PDVYLAFADH---RGRPFYDLLA---RVG-AERARRVVDLGCGPGNLTRYLARRW---------PGAVIEALDSSPEMVA 67 (255)
T ss_pred HHHHHHHHhH---hhCHHHHHHH---hCC-CCCCCEEEEEcCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHH
Confidence 4556544322 3344444444 333 3567899999999999999999875 567999999997 32
Q ss_pred --CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 107 --PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 107 --~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
...++.++ .+|+.+. .++++||+|+++.... .+.....++..+.++|||||.+++.+
T Consensus 68 ~a~~~~~~~~-~~d~~~~---------~~~~~fD~v~~~~~l~-----------~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 68 AARERGVDAR-TGDVRDW---------KPKPDTDVVVSNAALQ-----------WVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred HHHhcCCcEE-EcChhhC---------CCCCCceEEEEehhhh-----------hCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 22467788 8876541 2356899999977531 11123567888999999999999865
Q ss_pred c
Q psy1489 185 W 185 (229)
Q Consensus 185 ~ 185 (229)
+
T Consensus 127 ~ 127 (255)
T PRK14103 127 P 127 (255)
T ss_pred C
Confidence 4
No 20
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.48 E-value=2.7e-13 Score=98.97 Aligned_cols=96 Identities=25% Similarity=0.289 Sum_probs=71.8
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------CCCCCeEEecCCC-CChhHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------PIDGAVVLSKCDF-TQPDIQDR 127 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~~~~~~~~~~~D~-~~~~~~~~ 127 (229)
|+.+|||||||+|.++..++++. +..+|+|+|+++ |. ..+++.++ ++|+ ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~-~~d~~~~~----- 65 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF---------PGARVVGVDISPEMLEIARERAAEEGLSDRITFV-QGDAEFDP----- 65 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH---------TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEE-ESCCHGGT-----
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEE-ECccccCc-----
Confidence 57899999999999999999954 568999999997 21 23578899 9998 221
Q ss_pred HHHHhCCCCccEEEeCC-CCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 128 LVTILKDDKLDVVLSDM-APNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~-~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
-....||+|+++. .. +..-+. +....+++.+.+.|+|||++++.
T Consensus 66 ----~~~~~~D~v~~~~~~~-----~~~~~~---~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 66 ----DFLEPFDLVICSGFTL-----HFLLPL---DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp ----TTSSCEEEEEECSGSG-----GGCCHH---HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----ccCCCCCEEEECCCcc-----ccccch---hHHHHHHHHHHHhcCCCcEEEEE
Confidence 1245699999976 21 101111 44567889999999999999985
No 21
>PRK04266 fibrillarin; Provisional
Probab=99.48 E-value=2.1e-12 Score=106.35 Aligned_cols=137 Identities=21% Similarity=0.261 Sum_probs=92.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
+++|.+|||+|||||.++.++++.+ +.++|+|+|+++ | ....++.++ .+|+.++....
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v---------~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i-~~D~~~~~~~~--- 136 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIV---------EEGVVYAVEFAPRPMRELLEVAEERKNIIPI-LADARKPERYA--- 136 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhc---------CCCeEEEEECCHHHHHHHHHHhhhcCCcEEE-ECCCCCcchhh---
Confidence 5689999999999999999999886 347999999997 2 123578888 89987642111
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee------cCCCC---hHHHHHHHHhh
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI------WDGRN---RPQLEESITRF 200 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~------~~~~~---~~~~~~~l~~~ 200 (229)
.+. +.||+|+++++. .. ....++.++.++|||||.+++.+ +.... ..+.++.++..
T Consensus 137 -~l~-~~~D~i~~d~~~---------p~----~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~a 201 (226)
T PRK04266 137 -HVV-EKVDVIYQDVAQ---------PN----QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEG 201 (226)
T ss_pred -hcc-ccCCEEEECCCC---------hh----HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHc
Confidence 122 459999998642 11 12346788999999999999842 22221 12344566554
Q ss_pred -CCeeEEEcCCCCCCCCceEEEEecc
Q psy1489 201 -YSQVKILKPPSSRSHSAELFLLGRG 225 (229)
Q Consensus 201 -F~~v~~~kp~~sr~~s~E~Y~v~~~ 225 (229)
|..+..... +.-..-++++|++.
T Consensus 202 GF~~i~~~~l--~p~~~~h~~~v~~~ 225 (226)
T PRK04266 202 GFEILEVVDL--EPYHKDHAAVVARK 225 (226)
T ss_pred CCeEEEEEcC--CCCcCCeEEEEEEc
Confidence 776666643 22334577777764
No 22
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=1.3e-12 Score=117.30 Aligned_cols=149 Identities=22% Similarity=0.294 Sum_probs=97.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CC----CCCeEEecCCCCChhHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PI----DGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~----~~~~~~~~~D~~~~~~~~~i 128 (229)
..+|++|||+|||||+++..++++. +.++|+|+|+++ +. .. ..+.++ .+|..+..
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~---------~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~-~~D~~~~~----- 306 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELA---------PQAQVVALDIDAQRLERVRENLQRLGLKATVI-VGDARDPA----- 306 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHc---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEE-EcCcccch-----
Confidence 3578999999999999999999876 347999999997 21 01 125677 88887631
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcc-----------cHHHHHHHHHHHHHHHHHcccCCCEEEEee---cCCCChHHHH
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREM-----------DHDLITQLAIAVIRFAVTYSKPGADCLIKI---WDGRNRPQLE 194 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~-----------d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~---~~~~~~~~~~ 194 (229)
..+.+++||.|++|+++...|.... +......++..++..+.++|||||.++..+ +...+...+.
T Consensus 307 -~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~ 385 (427)
T PRK10901 307 -QWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIK 385 (427)
T ss_pred -hhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHH
Confidence 1234568999999998755543211 111223456689999999999999999654 3345555555
Q ss_pred HHHHhhCCeeEEEcCC---------CCCCCCceEEEEec
Q psy1489 195 ESITRFYSQVKILKPP---------SSRSHSAELFLLGR 224 (229)
Q Consensus 195 ~~l~~~F~~v~~~kp~---------~sr~~s~E~Y~v~~ 224 (229)
..++++ ..+++..+. .......+.+++|+
T Consensus 386 ~~l~~~-~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~ 423 (427)
T PRK10901 386 AFLARH-PDAELLDTGTPQQPGRQLLPGEEDGDGFFYAL 423 (427)
T ss_pred HHHHhC-CCCEEecCCCCCCCceEECCCCCCCCCeEEEE
Confidence 666553 222333221 11233567788875
No 23
>KOG1540|consensus
Probab=99.45 E-value=6.2e-13 Score=108.68 Aligned_cols=122 Identities=21% Similarity=0.279 Sum_probs=93.6
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC---CCCeEEecCCCCChhHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI---DGAVVLSKCDFTQPDIQ 125 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~---~~~~~~~~~D~~~~~~~ 125 (229)
.++++|||+|||||-++..+.+.+.++ ......+|+.+|++| |. ++ ..+.|+ .+|..+.+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~---~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~-~~dAE~Lp-- 172 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQ---FGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWV-EGDAEDLP-- 172 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccc---cCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEE-eCCcccCC--
Confidence 467999999999999999999988521 111237999999998 41 11 237788 88888743
Q ss_pred HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCee
Q psy1489 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV 204 (229)
Q Consensus 126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v 204 (229)
+++..||..++.. |+++.-+ .++++++|+|+|||||+|.+-.|+..+...+....++++.+|
T Consensus 173 ------Fdd~s~D~yTiaf-----GIRN~th------~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 173 ------FDDDSFDAYTIAF-----GIRNVTH------IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred ------CCCCcceeEEEec-----ceecCCC------HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 7889999999854 5666554 468999999999999999988888877566667777776666
No 24
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.43 E-value=9.9e-13 Score=109.87 Aligned_cols=107 Identities=20% Similarity=0.193 Sum_probs=77.1
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
++.+|||+|||+|.++..+++. ..+|+|+|+++ |. ......++ .+|+.+.. +++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~-----------~~~v~~~D~s~~~l~~a~~~~~~~~~~-~~d~~~~~--------~~~ 101 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER-----------GSQVTALDLSPPMLAQARQKDAADHYL-AGDIESLP--------LAT 101 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc-----------CCeEEEEECCHHHHHHHHhhCCCCCEE-EcCcccCc--------CCC
Confidence 5679999999999999888754 26999999997 31 12234566 78876521 456
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~ 198 (229)
++||+|+++.+.. .......++.++.++|+|||.+++..+......++...+.
T Consensus 102 ~~fD~V~s~~~l~-----------~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~ 154 (251)
T PRK10258 102 ATFDLAWSNLAVQ-----------WCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQ 154 (251)
T ss_pred CcEEEEEECchhh-----------hcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHH
Confidence 7899999976531 1122457889999999999999998777665555554443
No 25
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.43 E-value=2e-12 Score=109.01 Aligned_cols=110 Identities=23% Similarity=0.215 Sum_probs=79.2
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~ 127 (229)
+++|.+|||+|||||+++..+++.++ +.+.|+|+|+++ + ..+.++.++ ..|..+.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~--------~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~-~~D~~~~----- 134 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMK--------NEGAIVANEFSKSRTKVLIANINRCGVLNVAVT-NFDGRVF----- 134 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcC--------CCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEe-cCCHHHh-----
Confidence 46889999999999999999999875 457999999996 1 123456677 7775431
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHH-----------HHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHD-----------LITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~-----------~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
.. ....||.|++|+++...|....+.. ....++..+|..+.++|||||.++..+.
T Consensus 135 -~~--~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 135 -GA--AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred -hh--hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 11 1346999999998765554332211 1223556799999999999999986653
No 26
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.43 E-value=3.3e-12 Score=114.64 Aligned_cols=125 Identities=20% Similarity=0.246 Sum_probs=84.1
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CC--CC--CeE--EecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PI--DG--AVV--LSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~--~~--~~~--~~~~D~~~~~~~~ 126 (229)
+.+|.+|||+|||||+.+.++++.+ +.++|+|+|+++ +. .+ .+ +.+ . .+|..+..
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~---------~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~-~~d~~~~~--- 302 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELA---------PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETK-DGDGRGPS--- 302 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHc---------CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEe-cccccccc---
Confidence 4578999999999999999999876 457999999997 21 01 12 222 4 55544321
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcc-----------cHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC---CChHH
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREM-----------DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG---RNRPQ 192 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~-----------d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~---~~~~~ 192 (229)
...+.+.||.|++|+++..+|.... +......++..+|..+.++|||||.++..+.+- .+...
T Consensus 303 ---~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~ 379 (426)
T TIGR00563 303 ---QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQ 379 (426)
T ss_pred ---ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHH
Confidence 1123568999999998766664211 112334466789999999999999999766443 34444
Q ss_pred HHHHHHh
Q psy1489 193 LEESITR 199 (229)
Q Consensus 193 ~~~~l~~ 199 (229)
+...+++
T Consensus 380 v~~~l~~ 386 (426)
T TIGR00563 380 IKAFLQE 386 (426)
T ss_pred HHHHHHh
Confidence 4455554
No 27
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=5.7e-13 Score=111.71 Aligned_cols=96 Identities=18% Similarity=0.298 Sum_probs=73.3
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-----CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-----YPIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-----~~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+.++.+|||+|||+|.++..+++.. +.++|+|+|+++ | ...+++.++ .+|+.+. .
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~---------~~~~v~gvD~s~~~i~~a~~~~~~~~~~-~~d~~~~---------~ 89 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERW---------PAARITGIDSSPAMLAEARSRLPDCQFV-EADIASW---------Q 89 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHhCCCCeEE-ECchhcc---------C
Confidence 3568899999999999999999876 567999999997 2 134567788 8886541 2
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
++.+||+|+++..... ..+ ...++..+.++|+|||.+++.+
T Consensus 90 ~~~~fD~v~~~~~l~~----~~d-------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 PPQALDLIFANASLQW----LPD-------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCCCccEEEEccChhh----CCC-------HHHHHHHHHHhcCCCcEEEEEC
Confidence 3568999999875421 112 2467888999999999999865
No 28
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=3.5e-12 Score=114.45 Aligned_cols=112 Identities=22% Similarity=0.323 Sum_probs=82.1
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
+++|.+|||+|||||+.+.++++.++ +.++|+|+|+++ +. .+.+++++ .+|..+..
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~--------~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~-~~Da~~l~---- 301 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMK--------DQGKILAVDISREKIQLVEKHAKRLKLSSIEIK-IADAERLT---- 301 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEE-ECchhhhh----
Confidence 46789999999999999999999875 568999999997 11 23346677 78866521
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccH-----------HHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDH-----------DLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~-----------~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
. ..++.||.|++|+++...|....+. .....++.++|..+.++|||||.++..+.+
T Consensus 302 --~-~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 302 --E-YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred --h-hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1 1245799999999876666532211 122345678899999999999999876644
No 29
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=1.1e-12 Score=110.16 Aligned_cols=108 Identities=22% Similarity=0.263 Sum_probs=80.8
Q ss_pred hhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-CCeEEe
Q psy1489 48 KLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-GAVVLS 115 (229)
Q Consensus 48 kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~~~~~~ 115 (229)
|+..+.+++. +++|++|||+|||.|+.+.++|++.+ .+|+|+++|+ + ..++ ++++.
T Consensus 60 k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~----------v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~- 127 (283)
T COG2230 60 KLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYG----------VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR- 127 (283)
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcC----------CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE-
Confidence 4445555666 68999999999999999999999875 7999999996 1 1233 57777
Q ss_pred cCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489 116 KCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187 (229)
Q Consensus 116 ~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~ 187 (229)
..|..+ + .+.||-|+|-.+....|... ....+..+.++|+|||.+++.....
T Consensus 128 l~d~rd----------~-~e~fDrIvSvgmfEhvg~~~---------~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 128 LQDYRD----------F-EEPFDRIVSVGMFEHVGKEN---------YDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred eccccc----------c-ccccceeeehhhHHHhCccc---------HHHHHHHHHhhcCCCceEEEEEecC
Confidence 777776 2 24599999977654444322 3467888999999999999876544
No 30
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.40 E-value=7e-13 Score=105.99 Aligned_cols=120 Identities=21% Similarity=0.348 Sum_probs=90.8
Q ss_pred CcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--
Q psy1489 29 ADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-- 105 (229)
Q Consensus 29 ~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-- 105 (229)
.+.|.+... -|+|.+..|+. +.. +.+-.+|.|||||||.-+..|+++. |...|+|+|.|+ |
T Consensus 5 p~~Yl~F~~---eRtRPa~dLla---~Vp-~~~~~~v~DLGCGpGnsTelL~~Rw---------P~A~i~GiDsS~~Mla 68 (257)
T COG4106 5 PDQYLQFED---ERTRPARDLLA---RVP-LERPRRVVDLGCGPGNSTELLARRW---------PDAVITGIDSSPAMLA 68 (257)
T ss_pred HHHHHHHHH---hccCcHHHHHh---hCC-ccccceeeecCCCCCHHHHHHHHhC---------CCCeEeeccCCHHHHH
Confidence 677765433 37888877765 433 3345799999999999999999998 789999999998 5
Q ss_pred ---CCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 106 ---YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 106 ---~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
..++++.|. .+|+.+ +-++..+|++++|+... +-.||. ..|......|.|||.+.+
T Consensus 69 ~Aa~rlp~~~f~-~aDl~~---------w~p~~~~dllfaNAvlq----WlpdH~-------~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 69 KAAQRLPDATFE-EADLRT---------WKPEQPTDLLFANAVLQ----WLPDHP-------ELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred HHHHhCCCCcee-cccHhh---------cCCCCccchhhhhhhhh----hccccH-------HHHHHHHHhhCCCceEEE
Confidence 246888888 888654 45677899999998752 233442 455567778999999998
Q ss_pred eec
Q psy1489 183 KIW 185 (229)
Q Consensus 183 ~~~ 185 (229)
.+-
T Consensus 128 QmP 130 (257)
T COG4106 128 QMP 130 (257)
T ss_pred ECC
Confidence 764
No 31
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.39 E-value=4.5e-12 Score=101.38 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=81.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
+.++.+|||+|||+|.++..++++. +.++|+++|+++ +. .+.+++++ .+|...
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~---------~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~-~~d~~~------ 92 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQF---------PSLQVTAIERNPDALRLIKENRQRFGCGNIDII-PGEAPI------ 92 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEE-ecCchh------
Confidence 3578899999999999999998875 568999999997 21 12456777 676532
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEE
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKI 206 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~ 206 (229)
.+ .+.||+|+++... .. ....+..+.++|+|||.+++......+..++...+++. |..+.+
T Consensus 93 ---~~-~~~~D~v~~~~~~--------~~------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 93 ---EL-PGKADAIFIGGSG--------GN------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred ---hc-CcCCCEEEECCCc--------cC------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence 12 3579999996532 01 23467789999999999988665556677777777664 554443
No 32
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5.9e-12 Score=106.06 Aligned_cols=130 Identities=25% Similarity=0.345 Sum_probs=92.9
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
+.+|||||||.|.++..+++.. |..+++-+|++.+. ..++..+. ..|+.+.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~---------p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~-~s~~~~~-------- 220 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKS---------PQAKLTLVDVNARAVESARKNLAANGVENTEVW-ASNLYEP-------- 220 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhC---------CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEE-Eeccccc--------
Confidence 4599999999999999999986 77899999999631 23443455 5665552
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCC
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPP 210 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~ 210 (229)
..+ +||+|+||+++.. | ......+..+.++.|.+.|++||.+.+.+-. ...+...|.+.|.+|++..
T Consensus 221 -v~~-kfd~IisNPPfh~-G-----~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~---~l~y~~~L~~~Fg~v~~la-- 287 (300)
T COG2813 221 -VEG-KFDLIISNPPFHA-G-----KAVVHSLAQEIIAAAARHLKPGGELWIVANR---HLPYEKKLKELFGNVEVLA-- 287 (300)
T ss_pred -ccc-cccEEEeCCCccC-C-----cchhHHHHHHHHHHHHHhhccCCEEEEEEcC---CCChHHHHHHhcCCEEEEE--
Confidence 333 8999999997642 2 1223345668899999999999999887763 3445567778899888774
Q ss_pred CCCCCCceEEEEeccCC
Q psy1489 211 SSRSHSAELFLLGRGFK 227 (229)
Q Consensus 211 ~sr~~s~E~Y~v~~~~~ 227 (229)
....|.|-+.+|
T Consensus 288 -----~~~gf~Vl~a~k 299 (300)
T COG2813 288 -----KNGGFKVLRAKK 299 (300)
T ss_pred -----eCCCEEEEEEec
Confidence 233455555544
No 33
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.38 E-value=1.3e-12 Score=105.81 Aligned_cols=122 Identities=13% Similarity=0.085 Sum_probs=80.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
++.+|||+|||+|.++..+++.. +..+|+|+|+++ +. ..+++.++ ++|+.+ .+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~---------p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~-~~d~~~-----~l~ 104 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN---------PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLL-CGDAVE-----VLL 104 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC---------CCccEEEEEechHHHHHHHHHHHHcCCCCEEEE-ecCHHH-----HHH
Confidence 57899999999999999998875 567999999997 21 23567888 888621 133
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~ 200 (229)
..++++.||+|+++.+..... . .+.........+++.+.++|+|||.|++.........++++.++..
T Consensus 105 ~~~~~~~~D~V~~~~~~p~~~--~-~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 172 (202)
T PRK00121 105 DMFPDGSLDRIYLNFPDPWPK--K-RHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAE 172 (202)
T ss_pred HHcCccccceEEEECCCCCCC--c-cccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhC
Confidence 335577899999976421100 0 0000001234678899999999999998654333344555555543
No 34
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.38 E-value=3.2e-12 Score=112.33 Aligned_cols=118 Identities=13% Similarity=0.138 Sum_probs=83.1
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CC---CCCeEEecCCCCChhHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PI---DGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~---~~~~~~~~~D~~~~~~~~~ 127 (229)
+.+|||||||+|.++..++++. |..+|+++|++++. .. .+++++ ..|...
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~---------P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~-~~D~l~------ 292 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN---------PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM-INNALS------ 292 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE-Eccccc------
Confidence 4699999999999999999875 67899999999731 11 235666 666543
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEE
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKIL 207 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~ 207 (229)
.+++.+||+|+||++... +.. .. .....+.+..+.++|+|||.|++..... ..+...|++.|..+++.
T Consensus 293 ---~~~~~~fDlIlsNPPfh~-~~~-~~----~~ia~~l~~~a~~~LkpGG~L~iV~nr~---l~y~~~L~~~fg~~~~v 360 (378)
T PRK15001 293 ---GVEPFRFNAVLCNPPFHQ-QHA-LT----DNVAWEMFHHARRCLKINGELYIVANRH---LDYFHKLKKIFGNCTTI 360 (378)
T ss_pred ---cCCCCCEEEEEECcCccc-Ccc-CC----HHHHHHHHHHHHHhcccCCEEEEEEecC---cCHHHHHHHHcCCceEE
Confidence 133568999999887532 111 11 1234577889999999999999865333 33556677788888765
No 35
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.38 E-value=4.2e-12 Score=106.96 Aligned_cols=105 Identities=22% Similarity=0.175 Sum_probs=74.7
Q ss_pred hhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCCh
Q psy1489 52 IDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQP 122 (229)
Q Consensus 52 i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~ 122 (229)
+..... +.++.+|||+|||+|..+..+++.. .++|+|+|+++ |. ...++.+. .+|+.+.
T Consensus 44 ~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~----------~~~v~giD~s~~~~~~a~~~~~~~~~i~~~-~~D~~~~ 111 (263)
T PTZ00098 44 ILSDIE-LNENSKVLDIGSGLGGGCKYINEKY----------GAHVHGVDICEKMVNIAKLRNSDKNKIEFE-ANDILKK 111 (263)
T ss_pred HHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc----------CCEEEEEECCHHHHHHHHHHcCcCCceEEE-ECCcccC
Confidence 333443 4678999999999999999988754 36999999997 21 12357777 8887752
Q ss_pred hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
.+++++||+|++..... + ........+++.+.++|||||.|++..+
T Consensus 112 --------~~~~~~FD~V~s~~~l~--------h-~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 112 --------DFPENTFDMIYSRDAIL--------H-LSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred --------CCCCCCeEEEEEhhhHH--------h-CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 25577899999943210 0 0012345789999999999999998654
No 36
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.37 E-value=5.1e-12 Score=100.71 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=75.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
++.+|||+|||+|.++..++... +.++|+|+|+++ |. .+++++++ ++|+.+.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~---------~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i-~~d~~~~------- 104 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR---------PELKLTLLESNHKKVAFLREVKAELGLNNVEIV-NGRAEDF------- 104 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC---------CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEE-ecchhhc-------
Confidence 37899999999999999988653 567999999997 21 23467888 8887652
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR 199 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~ 199 (229)
..+++||+|+++.. ......+..+.++|+|||.+++.. ......++....++
T Consensus 105 --~~~~~fD~I~s~~~---------------~~~~~~~~~~~~~LkpgG~lvi~~-~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 105 --QHEEQFDVITSRAL---------------ASLNVLLELTLNLLKVGGYFLAYK-GKKYLDEIEEAKRK 156 (181)
T ss_pred --cccCCccEEEehhh---------------hCHHHHHHHHHHhcCCCCEEEEEc-CCCcHHHHHHHHHh
Confidence 12568999999641 112345677899999999999853 33445666665555
No 37
>PLN02244 tocopherol O-methyltransferase
Probab=99.37 E-value=2.9e-12 Score=111.77 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=73.1
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~ 127 (229)
.++.+|||+|||+|.++..++++.+ ++|+|+|+++ |. .. +++.++ .+|+.+..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g----------~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~-~~D~~~~~---- 181 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG----------ANVKGITLSPVQAARANALAAAQGLSDKVSFQ-VADALNQP---- 181 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE-EcCcccCC----
Confidence 5678999999999999999998753 6999999997 21 12 357888 88887632
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
++++.||+|++.... .+. .....++.++.++|||||.|++..+
T Consensus 182 ----~~~~~FD~V~s~~~~----~h~-------~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 182 ----FEDGQFDLVWSMESG----EHM-------PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ----CCCCCccEEEECCch----hcc-------CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 567899999995532 111 1234688899999999999998654
No 38
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.36 E-value=5.6e-12 Score=105.25 Aligned_cols=99 Identities=14% Similarity=0.262 Sum_probs=70.8
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~ 126 (229)
+.++.+|||+|||+|..+..+++.... +.++|+|+|+++ |. .. .++.++ .+|+.+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~-------~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~-~~d~~~----- 120 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHH-------DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVI-EGDIRD----- 120 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEE-eCChhh-----
Confidence 457889999999999999888875310 567999999997 32 11 257788 888765
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
++...+|+|++.... +..+ ......++.++.+.|+|||.|++..
T Consensus 121 -----~~~~~~D~vv~~~~l-----~~l~----~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 121 -----IAIENASMVVLNFTL-----QFLE----PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred -----CCCCCCCEEehhhHH-----HhCC----HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 223458999986532 1111 1224578899999999999998754
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.36 E-value=1.2e-12 Score=101.10 Aligned_cols=100 Identities=21% Similarity=0.294 Sum_probs=75.1
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i 128 (229)
+.+.+|||+|||+|.++..+++..+ +.++++|+|+++ | ...++++++ ++|+.+.+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~--------~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~-~~d~~~l~----- 67 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN--------PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFI-QGDIEDLP----- 67 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST--------TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEE-ESBTTCGC-----
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC--------CCCEEEEEECcHHHHHHhhcccccccccccceE-Eeehhccc-----
Confidence 3578999999999999999997655 678999999997 2 135578999 99998832
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
..++ +.||+|+++... +. ......++..+.++|++||.+++..+.
T Consensus 68 -~~~~-~~~D~I~~~~~l-----~~------~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 68 -QELE-EKFDIIISNGVL-----HH------FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -GCSS-TTEEEEEEESTG-----GG------TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -cccC-CCeeEEEEcCch-----hh------ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 1122 689999997643 11 112346788999999999999987665
No 40
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.36 E-value=1e-11 Score=111.99 Aligned_cols=124 Identities=25% Similarity=0.319 Sum_probs=86.6
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
..+|.+|||+|||||+.+.++++.++ +.++|+|+|+++ +. .+.++.++ .+|..+.
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~--------~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~-~~Da~~~----- 313 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQ--------NRGQITAVDRYPQKLEKIRSHASALGITIIETI-EGDARSF----- 313 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhC--------CCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEE-eCccccc-----
Confidence 35789999999999999999998875 457999999997 21 23356777 7887652
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcc--------cH---HHHHHHHHHHHHHHHHcccCCCEEEEeecCC---CChHHH
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREM--------DH---DLITQLAIAVIRFAVTYSKPGADCLIKIWDG---RNRPQL 193 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~--------d~---~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~---~~~~~~ 193 (229)
.++..||+|++|+++...|.... .. .....+...+|..+.++|+|||.++..+.+- .+...+
T Consensus 314 ----~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v 389 (445)
T PRK14904 314 ----SPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQI 389 (445)
T ss_pred ----ccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHH
Confidence 23567999999988655554211 11 1122345678999999999999999876543 233334
Q ss_pred HHHHHhh
Q psy1489 194 EESITRF 200 (229)
Q Consensus 194 ~~~l~~~ 200 (229)
...++.+
T Consensus 390 ~~~l~~~ 396 (445)
T PRK14904 390 EAFLQRH 396 (445)
T ss_pred HHHHHhC
Confidence 4555554
No 41
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.35 E-value=7.1e-12 Score=101.22 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=87.2
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------C-CCCCeEEecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------P-IDGAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~-~~~~~~~~~~D~~~~~~~~ 126 (229)
+.++.+|||+|||+|.++..++...+ +.++|+++|+++ +. . ..++.++ .+|..+.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~--------~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~-~~d~~~~---- 104 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVG--------ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLI-KGEAPEI---- 104 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEE-Eechhhh----
Confidence 45789999999999999999988765 567999999996 21 1 2456677 6775441
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEE
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKI 206 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~ 206 (229)
+.. + ...||+|+++... .....++..+.++|+|||.+++.........++...++.....+++
T Consensus 105 -l~~-~-~~~~D~V~~~~~~--------------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 105 -LFT-I-NEKFDRIFIGGGS--------------EKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEI 167 (198)
T ss_pred -Hhh-c-CCCCCEEEECCCc--------------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEE
Confidence 111 2 3579999995421 1124678889999999999987554444556777777654225666
Q ss_pred EcCCCCCC
Q psy1489 207 LKPPSSRS 214 (229)
Q Consensus 207 ~kp~~sr~ 214 (229)
.....+|.
T Consensus 168 ~~~~~~~~ 175 (198)
T PRK00377 168 TEVIIAKG 175 (198)
T ss_pred EEEehhhc
Confidence 66655554
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.35 E-value=7e-12 Score=105.97 Aligned_cols=97 Identities=29% Similarity=0.391 Sum_probs=72.6
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
+++|.+|||+|||+|.++..+++..+ +.++|+|+|+++ |. .+.++.+. .+|+.+..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g--------~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~-~~d~~~l~---- 141 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVG--------PTGKVIGVDMTPEMLAKARANARKAGYTNVEFR-LGEIEALP---- 141 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhC--------CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEE-EcchhhCC----
Confidence 56899999999999999888888776 567999999986 21 13466777 78765521
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
++++.||+|+++..... ..+ ...++.++.++|||||+|++.
T Consensus 142 ----~~~~~fD~Vi~~~v~~~----~~d-------~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 142 ----VADNSVDVIISNCVINL----SPD-------KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred ----CCCCceeEEEEcCcccC----CCC-------HHHHHHHHHHHcCCCcEEEEE
Confidence 44678999999765321 111 236788999999999999875
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.34 E-value=1.2e-11 Score=98.92 Aligned_cols=105 Identities=22% Similarity=0.211 Sum_probs=75.3
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
++++.+|||+|||+|..+..++... +.++|+|+|+++ |. .+.+++++ .+|+.+..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~---------~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~-~~d~~~~~---- 108 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIAR---------PELKVTLVDSLGKKIAFLREVAAELGLKNVTVV-HGRAEEFG---- 108 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHC---------CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEE-eccHhhCC----
Confidence 5568999999999999999988764 568999999996 21 23457788 88766521
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~ 198 (229)
. +++||+|+++... .....+..+.++|+|||.+++.... .....+.+...
T Consensus 109 ----~-~~~fDlV~~~~~~---------------~~~~~l~~~~~~LkpGG~lv~~~~~-~~~~~l~~~~~ 158 (187)
T PRK00107 109 ----Q-EEKFDVVTSRAVA---------------SLSDLVELCLPLLKPGGRFLALKGR-DPEEEIAELPK 158 (187)
T ss_pred ----C-CCCccEEEEcccc---------------CHHHHHHHHHHhcCCCeEEEEEeCC-ChHHHHHHHHH
Confidence 2 5689999995411 1246778899999999999986543 23344444444
No 44
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.34 E-value=3.4e-12 Score=107.85 Aligned_cols=106 Identities=23% Similarity=0.216 Sum_probs=68.7
Q ss_pred hHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEec
Q psy1489 49 LLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSK 116 (229)
Q Consensus 49 l~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~ 116 (229)
+..+.++.+ +++|++|||||||.|+++.+++++.+ ++|+|+.+|+- ..++ .+++. .
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g----------~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~-~ 118 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYG----------CHVTGITLSEEQAEYARERIREAGLEDRVEVR-L 118 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH------------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEE-E
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcC----------cEEEEEECCHHHHHHHHHHHHhcCCCCceEEE-E
Confidence 444455555 68999999999999999999999875 79999999961 1222 46677 7
Q ss_pred CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
.|..+ + +.+||.|+|-.+..-.|. ......++.+.++|+|||.+++..+.
T Consensus 119 ~D~~~----------~-~~~fD~IvSi~~~Ehvg~---------~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 119 QDYRD----------L-PGKFDRIVSIEMFEHVGR---------KNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp S-GGG--------------S-SEEEEESEGGGTCG---------GGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred eeccc----------c-CCCCCEEEEEechhhcCh---------hHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 77665 2 238999999554321111 12346788899999999999987654
No 45
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.34 E-value=2.5e-11 Score=101.03 Aligned_cols=133 Identities=23% Similarity=0.258 Sum_probs=90.3
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
.+.+|||+|||+|.++..+++.. +..+++|+|+++ + ..+.++.++ .+|+.+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~---------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~-~~d~~~~------- 149 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER---------PDARVTAVDISPEALAVARKNAARLGLDNVTFL-QSDWFEP------- 149 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEE-ECchhcc-------
Confidence 35689999999999999999875 557999999986 2 123357777 8887652
Q ss_pred HHhCCCCccEEEeCCCCCCCCCC-ccc-HH-------------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMR-EMD-HD-------------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~-~~d-~~-------------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~ 194 (229)
+++++||+|++|++....+.. ... .. ........++..+.++|+|||.+++.+- .....++.
T Consensus 150 --~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-~~~~~~~~ 226 (251)
T TIGR03534 150 --LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-YDQGEAVR 226 (251)
T ss_pred --CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-ccHHHHHH
Confidence 346789999998764321110 000 00 0122335778899999999999998652 23345666
Q ss_pred HHHHhh-CCeeEEEcCCCCC
Q psy1489 195 ESITRF-YSQVKILKPPSSR 213 (229)
Q Consensus 195 ~~l~~~-F~~v~~~kp~~sr 213 (229)
+.++.. |..+.+.++...+
T Consensus 227 ~~l~~~gf~~v~~~~d~~~~ 246 (251)
T TIGR03534 227 ALFEAAGFADVETRKDLAGK 246 (251)
T ss_pred HHHHhCCCCceEEEeCCCCC
Confidence 666653 8888888875543
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.34 E-value=1.2e-11 Score=91.47 Aligned_cols=95 Identities=24% Similarity=0.345 Sum_probs=69.5
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
+.++.+|||+|||+|.++..++++. +.++|+|+|+++ +. ..++++++ .+|+.+..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~---------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~---- 82 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLV---------PNGRVYAIERNPEALRLIERNARRFGVSNIVIV-EGDAPEAL---- 82 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHC---------CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEE-eccccccC----
Confidence 3567899999999999999999876 457999999986 11 13456777 67755310
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
. ....+||+|+++..+ .....+++.+.++|+|||.|++.+
T Consensus 83 --~-~~~~~~D~v~~~~~~--------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 --E-DSLPEPDRVFIGGSG--------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred --h-hhcCCCCEEEECCcc--------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 0 113589999996532 112477899999999999999864
No 47
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.33 E-value=1.4e-12 Score=91.81 Aligned_cols=87 Identities=23% Similarity=0.269 Sum_probs=63.7
Q ss_pred EeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-------CCCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-------YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL 137 (229)
Q Consensus 66 LDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~ 137 (229)
||+|||+|..+..++++ +...|+|+|+++ + ....++.+. .+|+++.. +++++|
T Consensus 1 LdiG~G~G~~~~~l~~~----------~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~--------~~~~sf 61 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR----------GGASVTGIDISEEMLEQARKRLKNEGVSFR-QGDAEDLP--------FPDNSF 61 (95)
T ss_dssp EEET-TTSHHHHHHHHT----------TTCEEEEEES-HHHHHHHHHHTTTSTEEEE-ESBTTSSS--------S-TT-E
T ss_pred CEecCcCCHHHHHHHhc----------cCCEEEEEeCCHHHHHHHHhcccccCchhe-eehHHhCc--------cccccc
Confidence 89999999999999987 247999999997 2 122345577 88888842 668899
Q ss_pred cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 138 D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
|+|++.... ..++....+++++.|+|||||.+++
T Consensus 62 D~v~~~~~~-----------~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 62 DVVFSNSVL-----------HHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEESHG-----------GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccce-----------eeccCHHHHHHHHHHHcCcCeEEeC
Confidence 999996543 1114456899999999999999975
No 48
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.33 E-value=2.9e-11 Score=96.01 Aligned_cols=125 Identities=16% Similarity=0.044 Sum_probs=83.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC---------CCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP---------IDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~---------~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
++.+|||+|||+|.++..+++.. .+|+|+|+++ +.. -.+++++ .+|+.+.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~-----------~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~d~~~~-------- 78 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG-----------KCILTTDINPFAVKELRENAKLNNVGLDVV-MTDLFKG-------- 78 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC-----------CEEEEEECCHHHHHHHHHHHHHcCCceEEE-Ecccccc--------
Confidence 46789999999999999988753 2899999997 210 0135666 7776551
Q ss_pred HhCCCCccEEEeCCCCCCCC-CCcccHHH---------HHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489 131 ILKDDKLDVVLSDMAPNATG-MREMDHDL---------ITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g-~~~~d~~~---------~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~ 200 (229)
. .++||+|+++.+..... ....+... ........+..+.++|+|||.+++......+..++++.+++.
T Consensus 79 -~-~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~ 156 (179)
T TIGR00537 79 -V-RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDER 156 (179)
T ss_pred -c-CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhC
Confidence 2 35899999987642111 00000100 122356789999999999999998766555578888888776
Q ss_pred CCeeEEE
Q psy1489 201 YSQVKIL 207 (229)
Q Consensus 201 F~~v~~~ 207 (229)
--.+++.
T Consensus 157 gf~~~~~ 163 (179)
T TIGR00537 157 GFRYEIV 163 (179)
T ss_pred CCeEEEE
Confidence 3334444
No 49
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.32 E-value=9.2e-12 Score=100.54 Aligned_cols=92 Identities=25% Similarity=0.196 Sum_probs=66.1
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
++.+|||+|||+|.++.+++++ + .+|+|+|+|+ +. .+.++++. ..|+.+..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g----------~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~-~~d~~~~~------ 91 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-G----------FDVTAWDKNPMSIANLERIKAAENLDNLHTA-VVDLNNLT------ 91 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-C----------CEEEEEeCCHHHHHHHHHHHHHcCCCcceEE-ecChhhCC------
Confidence 5689999999999999999875 2 5999999997 21 22346666 67765421
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+ ++.||+|++.... ++.........+..+.++|+|||.+++
T Consensus 92 --~-~~~fD~I~~~~~~---------~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 92 --F-DGEYDFILSTVVL---------MFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred --c-CCCcCEEEEecch---------hhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2 4579999997643 111122356788999999999999654
No 50
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.32 E-value=6.1e-12 Score=109.08 Aligned_cols=121 Identities=21% Similarity=0.135 Sum_probs=84.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
..++.+|||||||+|.++..+++.. +..+|+++|+++ |. ...++.++ .+|+.+..
T Consensus 111 ~~~~~~VLDLGcGtG~~~l~La~~~---------~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i-~gD~e~lp------- 173 (340)
T PLN02490 111 SDRNLKVVDVGGGTGFTTLGIVKHV---------DAKNVTILDQSPHQLAKAKQKEPLKECKII-EGDAEDLP------- 173 (340)
T ss_pred CCCCCEEEEEecCCcHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHhhhccCCeEE-eccHHhCC-------
Confidence 3567899999999999999988876 346899999986 31 12456777 77765521
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC----------------CCChHHHH
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD----------------GRNRPQLE 194 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~----------------~~~~~~~~ 194 (229)
++++.||+|++...... . .....+++++.++|+|||.+++.... ....+++.
T Consensus 174 -~~~~sFDvVIs~~~L~~-----~------~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~ 241 (340)
T PLN02490 174 -FPTDYADRYVSAGSIEY-----W------PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYI 241 (340)
T ss_pred -CCCCceeEEEEcChhhh-----C------CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHH
Confidence 45678999999654311 1 11246789999999999998764211 12346777
Q ss_pred HHHHhh-CCeeEEEc
Q psy1489 195 ESITRF-YSQVKILK 208 (229)
Q Consensus 195 ~~l~~~-F~~v~~~k 208 (229)
+.+++. |..+++..
T Consensus 242 ~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 242 EWFTKAGFKDVKLKR 256 (340)
T ss_pred HHHHHCCCeEEEEEE
Confidence 778776 87776654
No 51
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=7.1e-11 Score=96.06 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=107.4
Q ss_pred hcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C----CCCCCC
Q psy1489 38 KENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I----YPIDGA 111 (229)
Q Consensus 38 ~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~----~~~~~~ 111 (229)
...|.||+++||....+.|.+..+|..+||+|+.||+|+..++++ ++.+|+|+|... + ..-+++
T Consensus 56 ~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~----------gAk~VyavDVG~~Ql~~kLR~d~rV 125 (245)
T COG1189 56 EQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR----------GAKHVYAVDVGYGQLHWKLRNDPRV 125 (245)
T ss_pred CcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc----------CCcEEEEEEccCCccCHhHhcCCcE
Confidence 457999999999999999999889999999999999999999987 457999999986 2 223455
Q ss_pred eEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC----
Q psy1489 112 VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG---- 187 (229)
Q Consensus 112 ~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~---- 187 (229)
...+..|+.... .+.+. +..|++++|.++ .+ ...+|..+..+++|+|.++.-+=+.
T Consensus 126 ~~~E~tN~r~l~-----~~~~~-~~~d~~v~DvSF-----------IS---L~~iLp~l~~l~~~~~~~v~LvKPQFEag 185 (245)
T COG1189 126 IVLERTNVRYLT-----PEDFT-EKPDLIVIDVSF-----------IS---LKLILPALLLLLKDGGDLVLLVKPQFEAG 185 (245)
T ss_pred EEEecCChhhCC-----HHHcc-cCCCeEEEEeeh-----------hh---HHHHHHHHHHhcCCCceEEEEecchhhhh
Confidence 555456655432 11232 378999998864 22 2356777888899999887644110
Q ss_pred ------------CC-----hHHHHHHHHhh-CCeeEEEc-CCCCCCCCceEEEEec
Q psy1489 188 ------------RN-----RPQLEESITRF-YSQVKILK-PPSSRSHSAELFLLGR 224 (229)
Q Consensus 188 ------------~~-----~~~~~~~l~~~-F~~v~~~k-p~~sr~~s~E~Y~v~~ 224 (229)
+. ...+...+... |.-..+.+ |......|.|.++-.+
T Consensus 186 r~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~~GNiE~l~~~~ 241 (245)
T COG1189 186 REQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGGKGNIEFLLLLK 241 (245)
T ss_pred hhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCCCCcEeeeeeee
Confidence 00 23344444444 54444443 6666677777665443
No 52
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.31 E-value=6.1e-11 Score=104.81 Aligned_cols=146 Identities=15% Similarity=0.146 Sum_probs=96.8
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC--------C-CCCeEEecCCCCChhHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP--------I-DGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~--------~-~~~~~~~~~D~~~~~~~~~i 128 (229)
++++.+|||+|||+|.++..++... +..+|+|+|+|+ +.. . .++.++ ++|+.+.. +
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~---------p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi-~gDl~e~~----l 314 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALER---------PDAFVRASDISPPALETARKNAADLGARVEFA-HGSWFDTD----M 314 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEE-Ecchhccc----c
Confidence 3456799999999999999988765 567999999997 210 1 147788 88876531 0
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcc-------cHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREM-------DHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~-------d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~ 194 (229)
..+++||+|+||++.-..+.... ++. .-++....++..+.++|+|||.+++.+-. .....+.
T Consensus 315 ---~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~ 390 (423)
T PRK14966 315 ---PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVR 390 (423)
T ss_pred ---ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHH
Confidence 11357999999986322211111 000 11223457888899999999999987643 3346677
Q ss_pred HHHHhh-CCeeEEEcCCCCCCCCceEEEEeccC
Q psy1489 195 ESITRF-YSQVKILKPPSSRSHSAELFLLGRGF 226 (229)
Q Consensus 195 ~~l~~~-F~~v~~~kp~~sr~~s~E~Y~v~~~~ 226 (229)
+.+... |..+++.|.-+.+ +.+++++..
T Consensus 391 ~ll~~~Gf~~v~v~kDl~G~----dR~v~~~~~ 419 (423)
T PRK14966 391 GVLAENGFSGVETLPDLAGL----DRVTLGKYM 419 (423)
T ss_pred HHHHHCCCcEEEEEEcCCCC----cEEEEEEEh
Confidence 777664 7888888774443 556666543
No 53
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.31 E-value=1.6e-11 Score=101.82 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=71.3
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------C---CCCCeEEecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------P---IDGAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~---~~~~~~~~~~D~~~~~~~~ 126 (229)
+.++.+|||+|||+|.++..++++... +.++++|+|+++ |. . ..++.++ .+|+.+.
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~-------p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~-~~d~~~~---- 118 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQ-------PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEIL-CNDIRHV---- 118 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCC-------CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEE-ECChhhC----
Confidence 357789999999999999999887421 467999999996 31 1 1246778 8887662
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
+...+|+|++.... ++........++.++.++|+|||.|++..
T Consensus 119 ------~~~~~d~v~~~~~l---------~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 119 ------EIKNASMVILNFTL---------QFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ------CCCCCCEEeeecch---------hhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 23458999986643 11111234578899999999999998864
No 54
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.31 E-value=4.7e-12 Score=101.97 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=82.5
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
...+|||+|||+|.++..++++. |...|+|+|+++ + ..+.++.++ ++|+.+. ..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~---------p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i-~~d~~~~-----~~ 80 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN---------PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVL-CGDANEL-----LD 80 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC---------CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEE-ccCHHHH-----HH
Confidence 45699999999999999999875 678999999986 2 124578888 8887652 22
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~ 200 (229)
..++++.+|.|+++.+...... .+....-.....+.++.++|||||.|++.+........+++.+...
T Consensus 81 ~~~~~~~~d~v~~~~pdpw~k~---~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 81 KFFPDGSLSKVFLNFPDPWPKK---RHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred hhCCCCceeEEEEECCCcCCCC---CccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 2345668999999864211110 0100001124678899999999999988765544445555666554
No 55
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.31 E-value=2e-11 Score=105.65 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=81.1
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------CCCCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------PIDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~~~~~~~~~~~D~~~~~~~~~i 128 (229)
+|.+|||+|||+|.++..++... ...|+|+|+++ |. ...++.++ .+|+.+..
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g----------~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~-~~d~e~lp----- 185 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAG----------AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLL-PLGIEQLP----- 185 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcC----------CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEE-eCCHHHCC-----
Confidence 57899999999999999988763 24799999987 21 01357777 77765521
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC--C-------------------
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD--G------------------- 187 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~--~------------------- 187 (229)
+ ++.||+|+|.... .+.......+..+.+.|+|||.|++..+. +
T Consensus 186 ---~-~~~FD~V~s~~vl-----------~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~ 250 (322)
T PRK15068 186 ---A-LKAFDTVFSMGVL-----------YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY 250 (322)
T ss_pred ---C-cCCcCEEEECChh-----------hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce
Confidence 2 5689999995432 11122356789999999999999976421 0
Q ss_pred --CChHHHHHHHHhh-CCeeEEEcC
Q psy1489 188 --RNRPQLEESITRF-YSQVKILKP 209 (229)
Q Consensus 188 --~~~~~~~~~l~~~-F~~v~~~kp 209 (229)
+....+...|++. |..+++...
T Consensus 251 ~lps~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 251 FIPSVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred eCCCHHHHHHHHHHcCCceEEEEeC
Confidence 1234566666665 887777644
No 56
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.30 E-value=6.1e-11 Score=107.01 Aligned_cols=110 Identities=22% Similarity=0.221 Sum_probs=81.1
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~ 127 (229)
.++|.+|||+|||||+.|.+++..++ ..+.|+++|+++- ..+.++.+. ..|....
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~--------~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~-~~D~~~~----- 176 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMN--------NQGAIVANEYSASRVKVLHANISRCGVSNVALT-HFDGRVF----- 176 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE-eCchhhh-----
Confidence 36899999999999999999999886 5689999999861 123456666 6665542
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccH-----------HHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDH-----------DLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~-----------~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
...+ ...||.|+.|+++...|..-.+. .....++..+|..|.++|||||++|-.+
T Consensus 177 -~~~~-~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 177 -GAAL-PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred -hhhc-hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 1222 35799999999987666643332 1233466789999999999999997554
No 57
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.30 E-value=3.4e-11 Score=103.55 Aligned_cols=106 Identities=11% Similarity=0.040 Sum_probs=69.8
Q ss_pred hhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------CCCCCeEE
Q psy1489 47 FKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------PIDGAVVL 114 (229)
Q Consensus 47 ~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~~~~~~~~ 114 (229)
.+...+..... ..+|.+|||+|||+|.++..++... ...|+|+|+++ |. ....+.+.
T Consensus 108 ~~~~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g----------~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~ 176 (314)
T TIGR00452 108 IKWDRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHG----------AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILE 176 (314)
T ss_pred HHHHHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcC----------CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 33333333333 2457899999999999988877652 34899999997 31 11234555
Q ss_pred ecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 115 SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 115 ~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
..++.+. -....||+|+|.... .+.......|.++.+.|+|||.|++..
T Consensus 177 -~~~ie~l---------p~~~~FD~V~s~gvL-----------~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 177 -PLGIEQL---------HELYAFDTVFSMGVL-----------YHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred -ECCHHHC---------CCCCCcCEEEEcchh-----------hccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 5554431 113479999996542 111223568899999999999999764
No 58
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.30 E-value=2.4e-11 Score=103.65 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=78.2
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CCC-CCeEEecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PID-GAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~~-~~~~~~~~D~~~~~~~~ 126 (229)
..++.+|||+|||+|.++..+++. +..+|+|+|+++. . .+. .+.+. .++...
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~----------g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~-~~~~~~----- 220 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL----------GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVK-LIYLEQ----- 220 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc----------CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEE-eccccc-----
Confidence 346899999999999999887754 3468999999972 1 111 12333 333111
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEE
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKI 206 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~ 206 (229)
..+++||+|+++... +....++..+.++|+|||.+++..+......++.+.+++.|..+.+
T Consensus 221 -----~~~~~fDlVvan~~~--------------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~ 281 (288)
T TIGR00406 221 -----PIEGKADVIVANILA--------------EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEI 281 (288)
T ss_pred -----ccCCCceEEEEecCH--------------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeE
Confidence 235689999997631 1224577889999999999999877666677788877776655544
No 59
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=99.30 E-value=2.4e-11 Score=104.20 Aligned_cols=119 Identities=24% Similarity=0.327 Sum_probs=83.2
Q ss_pred CccchhhhhhHhhhhhcC-------ccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC----C
Q psy1489 40 NYRCRSAFKLLEIDSKIK-------FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP----I 108 (229)
Q Consensus 40 ~~~~r~~~kl~~i~~~~~-------~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~----~ 108 (229)
+.+||+++||.++...|. .+.+|.++|||||+||+|+..++++. .+|+|||..+|.+ .
T Consensus 183 ~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG-----------~~V~AVD~g~l~~~L~~~ 251 (357)
T PRK11760 183 DAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRG-----------MFVTAVDNGPMAQSLMDT 251 (357)
T ss_pred CCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcC-----------CEEEEEechhcCHhhhCC
Confidence 678999999999855553 46789999999999999999999862 4999999988753 3
Q ss_pred CCCeEEecCCCCChhHHHHHHHHhC-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC--CEEE--Ee
Q psy1489 109 DGAVVLSKCDFTQPDIQDRLVTILK-DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG--ADCL--IK 183 (229)
Q Consensus 109 ~~~~~~~~~D~~~~~~~~~i~~~~~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg--G~~v--~~ 183 (229)
+++... .+|.... .+ .+.+|+|+|||... ...+...+.++|..| ..+| +|
T Consensus 252 ~~V~h~-~~d~fr~---------~p~~~~vDwvVcDmve~---------------P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 252 GQVEHL-RADGFKF---------RPPRKNVDWLVCDMVEK---------------PARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred CCEEEE-eccCccc---------CCCCCCCCEEEEecccC---------------HHHHHHHHHHHHhcCcccEEEEEEE
Confidence 567777 6654431 22 56899999999631 234556677777665 3444 34
Q ss_pred ecCCCChHHHH
Q psy1489 184 IWDGRNRPQLE 194 (229)
Q Consensus 184 ~~~~~~~~~~~ 194 (229)
.....+..++.
T Consensus 307 lpmk~r~~~v~ 317 (357)
T PRK11760 307 LPMKKRYEEVR 317 (357)
T ss_pred cCCCCCHHHHH
Confidence 33334444433
No 60
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.29 E-value=2.9e-12 Score=104.40 Aligned_cols=99 Identities=25% Similarity=0.367 Sum_probs=66.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCC--CCe----EEecCCCCChhHHHHHHHHhCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPID--GAV----VLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~--~~~----~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
+|.+|||+|||-|.++..+|+. | ..|+|+|+++ .+++ ..+ .+ ..|....... ++. ..+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-G----------a~VtgiD~se-~~I~~Ak~ha~e~gv-~i~y~~~~~e-dl~--~~~ 122 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-G----------ASVTGIDASE-KPIEVAKLHALESGV-NIDYRQATVE-DLA--SAG 122 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-C----------CeeEEecCCh-HHHHHHHHhhhhccc-cccchhhhHH-HHH--hcC
Confidence 6899999999999999999975 2 6999999997 1221 100 01 1122111111 121 123
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
++||+|+| ++-..+......+++.+.+++||||.+++....
T Consensus 123 ~~FDvV~c-----------mEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 123 GQFDVVTC-----------MEVLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred CCccEEEE-----------hhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 79999999 233344445667899999999999999887643
No 61
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.29 E-value=8e-11 Score=99.45 Aligned_cols=132 Identities=21% Similarity=0.229 Sum_probs=89.7
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i 128 (229)
.++.+|||+|||+|.++..++... +..+|+|+|+++ + ....++.++ .+|+.+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~---------~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~-~~d~~~~------ 170 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKER---------PDAEVTAVDISPEALAVARRNAKHGLGARVEFL-QGDWFEP------ 170 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEE-EccccCc------
Confidence 356799999999999999999876 567999999996 1 012357777 8887552
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCc-c-cHH-------------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHH
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMRE-M-DHD-------------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~-~-d~~-------------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~ 193 (229)
+.+++||+|++|++....+... . ... ..+.....++..+.++|+|||.+++.+-. .....+
T Consensus 171 ---~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-~~~~~~ 246 (275)
T PRK09328 171 ---LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-DQGEAV 246 (275)
T ss_pred ---CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc-hHHHHH
Confidence 2246899999987632211100 0 000 12344567888999999999999986532 233456
Q ss_pred HHHHHhh-CCeeEEEcCCC
Q psy1489 194 EESITRF-YSQVKILKPPS 211 (229)
Q Consensus 194 ~~~l~~~-F~~v~~~kp~~ 211 (229)
...+... |..+.+.++..
T Consensus 247 ~~~l~~~gf~~v~~~~d~~ 265 (275)
T PRK09328 247 RALLAAAGFADVETRKDLA 265 (275)
T ss_pred HHHHHhCCCceeEEecCCC
Confidence 6666553 77888887644
No 62
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.27 E-value=4e-11 Score=98.63 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=73.0
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----C-CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----P-IDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~-~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
++.+|||+|||+|.++..+++.. +..+++++|+++ +. . .+++.++ .+|+.+.. ++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~-~~d~~~~~--------~~ 95 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF---------PQAEFIALDISAGMLAQAKTKLSENVQFI-CGDAEKLP--------LE 95 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC---------CCCcEEEEeChHHHHHHHHHhcCCCCeEE-ecchhhCC--------CC
Confidence 34789999999999999998875 567899999986 21 1 1356777 78876521 35
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~ 188 (229)
+++||+|+++.... .......++..+.++|+|||.+++..+...
T Consensus 96 ~~~fD~vi~~~~l~-----------~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 96 DSSFDLIVSNLALQ-----------WCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred CCceeEEEEhhhhh-----------hccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 67899999976431 111234688899999999999998776543
No 63
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.26 E-value=1.7e-10 Score=100.54 Aligned_cols=116 Identities=21% Similarity=0.236 Sum_probs=80.5
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
..+|||||||+|.++..++++. +..+|+++|++++ . .+ ..+++ ..|+...
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~---------p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~-~~D~~~~-------- 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHS---------PKIRLTLSDVSAAALESSRATLAANGL-EGEVF-ASNVFSD-------- 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEE-Ecccccc--------
Confidence 4589999999999999999875 5679999999962 1 11 23455 5665431
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEE
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKIL 207 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~ 207 (229)
. ++.||+|+||++... +.. .........+..+.++|+|||.+++..-...... ..+.+.|..+++.
T Consensus 258 -~-~~~fDlIvsNPPFH~-g~~-----~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~---~~l~~~Fg~~~~l 323 (342)
T PRK09489 258 -I-KGRFDMIISNPPFHD-GIQ-----TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP---DLLDETFGSHEVL 323 (342)
T ss_pred -c-CCCccEEEECCCccC-Ccc-----ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH---HHHHHHcCCeEEE
Confidence 2 468999999886521 111 1123456789999999999999988664433333 4555668777765
No 64
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.26 E-value=1.1e-10 Score=99.53 Aligned_cols=131 Identities=18% Similarity=0.254 Sum_probs=88.8
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-CCeEEecCCCCChhHHHHHHH
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-GAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.+|||+|||+|.++..++... +..+|+|+|+++ +. ... ++.++ ++|+.+.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~---------~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~-~~d~~~~-------- 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF---------PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFI-QSNLFEP-------- 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-ECchhcc--------
Confidence 689999999999999999875 557999999997 11 122 37788 8887652
Q ss_pred HhCCCCccEEEeCCCCCCCCC-------CcccHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHH
Q psy1489 131 ILKDDKLDVVLSDMAPNATGM-------REMDHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES 196 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~-------~~~d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~ 196 (229)
+++.+||+|++|++.-.... ...+.. .-+.....++..+.++|+|||.+++.+... ....+.+.
T Consensus 178 -~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-q~~~~~~~ 255 (284)
T TIGR00536 178 -LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-QQKSLKEL 255 (284)
T ss_pred -CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-HHHHHHHH
Confidence 33447999999876321110 000000 112356678899999999999999977542 23455566
Q ss_pred HHh--hCCeeEEEcCCCCC
Q psy1489 197 ITR--FYSQVKILKPPSSR 213 (229)
Q Consensus 197 l~~--~F~~v~~~kp~~sr 213 (229)
+.. -|..+.+.|.-+.+
T Consensus 256 ~~~~~~~~~~~~~~D~~g~ 274 (284)
T TIGR00536 256 LRIKFTWYDVENGRDLNGK 274 (284)
T ss_pred HHhcCCCceeEEecCCCCC
Confidence 653 37888888874443
No 65
>PRK14967 putative methyltransferase; Provisional
Probab=99.25 E-value=8.2e-11 Score=96.74 Aligned_cols=122 Identities=18% Similarity=0.129 Sum_probs=79.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-------C--CCCeEEecCCCCChhHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-------I--DGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-------~--~~~~~~~~~D~~~~~~~~~i 128 (229)
+.++.+|||+|||+|.++..+++. +..+|+++|+++ +.. . .++.++ .+|+.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~----------~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~-~~d~~~------- 95 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA----------GAGSVTAVDISRRAVRSARLNALLAGVDVDVR-RGDWAR------- 95 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc----------CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEE-ECchhh-------
Confidence 457889999999999999988864 235899999997 211 1 135566 677654
Q ss_pred HHHhCCCCccEEEeCCCCCCCCC---CcccHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGM---REMDHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~---~~~d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~ 198 (229)
.++++.||+|++|++...... ...... ........++..+.++|+|||.+++..-......+++..++
T Consensus 96 --~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~ 173 (223)
T PRK14967 96 --AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLS 173 (223)
T ss_pred --hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHH
Confidence 134678999999975321110 000000 11233467888999999999999874433335566777776
Q ss_pred hh
Q psy1489 199 RF 200 (229)
Q Consensus 199 ~~ 200 (229)
..
T Consensus 174 ~~ 175 (223)
T PRK14967 174 EA 175 (223)
T ss_pred HC
Confidence 53
No 66
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.25 E-value=3.8e-11 Score=96.80 Aligned_cols=94 Identities=19% Similarity=0.138 Sum_probs=63.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-------CCC--CeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-------IDG--AVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-------~~~--~~~~~~~D~~~~~~~~~i~~ 130 (229)
++.+|||+|||+|.++.+++++ + .+|+|+|+++ |.. ..+ +.+. ..|+...
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~-g----------~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~-~~d~~~~-------- 89 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA-G----------YDVRAWDHNPASIASVLDMKARENLPLRTD-AYDINAA-------- 89 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC-C----------CeEEEEECCHHHHHHHHHHHHHhCCCceeE-eccchhc--------
Confidence 3579999999999999999975 2 5999999997 211 012 3444 4554331
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
.+ +.+||+|++..... .. ........++.+.++|+|||.+++..
T Consensus 90 ~~-~~~fD~I~~~~~~~-----~~----~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 90 AL-NEDYDFIFSTVVFM-----FL----QAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred cc-cCCCCEEEEecccc-----cC----CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 12 35799999966431 11 11234577899999999999965543
No 67
>PRK14968 putative methyltransferase; Provisional
Probab=99.24 E-value=3.6e-10 Score=89.81 Aligned_cols=120 Identities=25% Similarity=0.303 Sum_probs=81.0
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCC--CeEEecCCCCChhHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDG--AVVLSKCDFTQPDIQD 126 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~--~~~~~~~D~~~~~~~~ 126 (229)
.++.+|||+|||+|.++..++.+ + .+|+|+|+++ +. ...+ +.++ .+|+.+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~----------~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~-~~d~~~~---- 85 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-G----------KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVI-RSDLFEP---- 85 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-c----------ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEE-ecccccc----
Confidence 56789999999999999998876 3 6999999997 21 1122 6677 7776542
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCC-Cccc---HH------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHH
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGM-REMD---HD------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEES 196 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~-~~~d---~~------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~ 196 (229)
+.+..||+|+++.+....+. .... .. .........+..+.++|+|||.+++.+........+.+.
T Consensus 86 -----~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~ 160 (188)
T PRK14968 86 -----FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEY 160 (188)
T ss_pred -----ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHH
Confidence 33458999999865322110 0000 00 012334577899999999999998866555556677777
Q ss_pred HHhh
Q psy1489 197 ITRF 200 (229)
Q Consensus 197 l~~~ 200 (229)
+...
T Consensus 161 ~~~~ 164 (188)
T PRK14968 161 LEKL 164 (188)
T ss_pred HHHC
Confidence 7765
No 68
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.24 E-value=9.9e-12 Score=91.45 Aligned_cols=103 Identities=24% Similarity=0.285 Sum_probs=69.8
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CC-CCCeEEecCCCCChhHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PI-DGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~-~~~~~~~~~D~~~~~~~~~i~ 129 (229)
|.+|||+|||+|.++..+++.. ..+++|+|+++.. .. ..++++ .+|+.+ ..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~----------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~-~~D~~~------~~ 63 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG----------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVI-VGDARD------LP 63 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC----------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEE-ESHHHH------HH
T ss_pred CCEEEEcCcchHHHHHHHHHHC----------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEE-ECchhh------ch
Confidence 5799999999999999988874 3699999999721 11 356788 887654 22
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
..+.+++||+|++|++.... ..+......+....++.+.++|+|||.+++.+
T Consensus 64 ~~~~~~~~D~Iv~npP~~~~---~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 64 EPLPDGKFDLIVTNPPYGPR---SGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp HTCTTT-EEEEEE--STTSB---TT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhccCceeEEEEECCCCccc---cccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 34667899999999875221 11111111134577889999999999998754
No 69
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.24 E-value=1.9e-11 Score=105.58 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=67.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-----------CCCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-----------IDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-----------~~~~~~~~~~D~~~~~~~~~i 128 (229)
++.+|||+|||+|.++..+++. .++|+|||+++ |.. ..++.++ .+|+.+ +
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-----------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~-~~dae~------l 192 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-----------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYL-CTTAEK------L 192 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-----------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEE-ecCHHH------h
Confidence 5779999999999999988763 26999999996 210 1246666 666544 2
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
. +.+++||+|++.. .+.++.....++.++.++|||||.+++.++
T Consensus 193 ~--~~~~~FD~Vi~~~-----------vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 193 A--DEGRKFDAVLSLE-----------VIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred h--hccCCCCEEEEhh-----------HHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 1 3457899999943 222233345788999999999999998753
No 70
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=99.24 E-value=1.7e-10 Score=106.57 Aligned_cols=182 Identities=15% Similarity=0.252 Sum_probs=125.9
Q ss_pred cCcHHHHHHHhcCccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC---
Q psy1489 28 FADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--- 104 (229)
Q Consensus 28 ~~d~y~~~~~~~~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--- 104 (229)
..+|-..-.+..-+..-|.||+..|...+++.. .-.|-.|-|+|+.+..+++.. |.++++=.-+.+
T Consensus 291 ~qnPlISGLR~~Q~ATGAHYKlRsIL~~~~i~~--~d~l~~GDGSGGita~lLR~~---------p~sr~iFNSLL~~~~ 359 (675)
T PF14314_consen 291 IQNPLISGLRLFQLATGAHYKLRSILKNLNIKY--RDALCGGDGSGGITACLLRMN---------PTSRGIFNSLLELDG 359 (675)
T ss_pred ccCcchhhhhhhcccccchhhHHHHHHhcCCCc--ceeEEEecCchHHHHHHHHhC---------cccceeeeccccccC
Confidence 344443333333456778899999998888543 345788999999999999876 344443322211
Q ss_pred -----------------------CCCCCCCeEEecCCCCChhHHHHHHHHhC--CCCccEEEeCCCCCCCCCCcccHHHH
Q psy1489 105 -----------------------IYPIDGAVVLSKCDFTQPDIQDRLVTILK--DDKLDVVLSDMAPNATGMREMDHDLI 159 (229)
Q Consensus 105 -----------------------~~~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~~~D~V~sd~~~~~~g~~~~d~~~~ 159 (229)
+.....++-. ..|+.++.+++.+..... .-++|+|++||-. .|....
T Consensus 360 ~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~-pSDLs~~~TW~YF~~l~~~~~~~idLiv~DmEV-------~d~~~~ 431 (675)
T PF14314_consen 360 SDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEH-PSDLSDPETWKYFVSLKKQHNLSIDLIVMDMEV-------RDDSII 431 (675)
T ss_pred CCCCCCCCCCcHHHhccCcccceeecchhhhcC-ccccCCccHHHHHHHHHhhcCCcccEEEEecee-------cChHHH
Confidence 1112234444 789999988887766433 3469999999942 233222
Q ss_pred HHHHHHHHHHHHHcccCCCEEEEeecCC---CChHHHHHHHHhhCCeeEEEcCCCCCCCCceEEEEeccCCC
Q psy1489 160 TQLAIAVIRFAVTYSKPGADCLIKIWDG---RNRPQLEESITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~~v~~~~~~---~~~~~~~~~l~~~F~~v~~~kp~~sr~~s~E~Y~v~~~~~~ 228 (229)
...-..+...+..+|.++|++|+|+|-. .....++..+-++|..|+.+.+..|-+.++|+|+||++++.
T Consensus 432 ~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~ 503 (675)
T PF14314_consen 432 RKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKK 503 (675)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhhcCceEEEECCCCCCCceEEEEEEecccC
Confidence 2222334456778889999999998754 22336788888999999999999999999999999999874
No 71
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=2.1e-11 Score=102.15 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=69.9
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------C-CCCCeEEecCCCCChhHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------P-IDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~-~~~~~~~~~~D~~~~~~~~~ 127 (229)
.++.+|||+|||+|.++..+++.. .+|+|+|+++ |. . .+++.++ ++|+.+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g-----------~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~-~~d~~~l----- 105 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG-----------HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFI-HCAAQDI----- 105 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC-----------CEEEEEECCHHHHHHHHHHHHhcCCccceEEE-EcCHHHH-----
Confidence 456899999999999999998752 5899999997 31 1 1356777 7776552
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
.. +.++.||+|++.... ..+.....++..+.++|||||.+++..+.
T Consensus 106 -~~-~~~~~fD~V~~~~vl-----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 106 -AQ-HLETPVDLILFHAVL-----------EWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred -hh-hcCCCCCEEEehhHH-----------HhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 11 335789999995532 22223357889999999999999875544
No 72
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.23 E-value=4.2e-11 Score=101.37 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=72.0
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
++.+|||+|||+|.++..+++..+. .....|+|+|+++ |. ..+++.+. .+|+.+.. +++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~------~~~~~v~giD~s~~~l~~A~~~~~~~~~~-~~d~~~lp--------~~~ 149 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPE------ITTMQLFGLDISKVAIKYAAKRYPQVTFC-VASSHRLP--------FAD 149 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhccc------ccCCeEEEECCCHHHHHHHHHhCCCCeEE-EeecccCC--------CcC
Confidence 4578999999999999999887530 0123799999997 21 23567788 88877632 557
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHH
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~ 195 (229)
+.||+|++...+ ..+.++.++|||||.|++.........++.+
T Consensus 150 ~sfD~I~~~~~~------------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~ 192 (272)
T PRK11088 150 QSLDAIIRIYAP------------------CKAEELARVVKPGGIVITVTPGPRHLFELKG 192 (272)
T ss_pred CceeEEEEecCC------------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHH
Confidence 789999985542 1235688999999999986654444444433
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=4.4e-11 Score=97.65 Aligned_cols=92 Identities=23% Similarity=0.356 Sum_probs=68.4
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
++++++|||+|||+|.++..+++..+ +.++|+++|+++ +. ...++.++ .+|....
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~--------~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~-~gd~~~~----- 139 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVG--------KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVI-VGDGTLG----- 139 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEE-ECCcccC-----
Confidence 46899999999999999999998875 567999999996 21 23467888 8887652
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
..+...||+|+++... + .+...+.+.|+|||++++-+
T Consensus 140 ---~~~~~~fD~I~~~~~~-----~------------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 ---YEENAPYDRIYVTAAG-----P------------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ---CCcCCCcCEEEECCCc-----c------------cchHHHHHhhCCCcEEEEEE
Confidence 1235689999997642 1 11123566899999998854
No 74
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.22 E-value=4.9e-11 Score=97.53 Aligned_cols=93 Identities=26% Similarity=0.372 Sum_probs=68.4
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
++++.+|||+|||+|.++..+++..+ +.++|+++|+++ +. .+.+++++ .+|..+..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~--------~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~-~~d~~~~~---- 141 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVG--------RDGLVVSIERIPELAEKAERRLRKLGLDNVIVI-VGDGTQGW---- 141 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEE-ECCcccCC----
Confidence 46889999999999999999998865 457899999996 21 23567888 88876521
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
.....||+|+++.... .+...+.+.|+|||++++-+-
T Consensus 142 ----~~~~~fD~Ii~~~~~~-----------------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 142 ----EPLAPYDRIYVTAAGP-----------------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ----cccCCCCEEEEcCCcc-----------------cccHHHHHhcCcCcEEEEEEc
Confidence 1235899999976431 122346778999999998543
No 75
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.22 E-value=1.4e-10 Score=94.10 Aligned_cols=97 Identities=20% Similarity=0.160 Sum_probs=68.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-----CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-----YPIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-----~~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+.++.+|||+|||+|.++..+++.. +..+++|+|+|+ | ...+++.+. ++|+.++ +
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~---------~~~~v~giDiS~~~l~~A~~~~~~~~~~-~~d~~~~---------~ 101 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLL---------PFKHIYGVEINEYAVEKAKAYLPNINII-QGSLFDP---------F 101 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHhhCCCCcEE-EeeccCC---------C
Confidence 4567899999999999999998765 457999999997 2 124567777 7887652 4
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
++++||+|++..... |. .......+++++.+++ ++.+++..+
T Consensus 102 ~~~sfD~V~~~~vL~--------hl-~p~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 102 KDNFFDLVLTKGVLI--------HI-NPDNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred CCCCEEEEEECChhh--------hC-CHHHHHHHHHHHHhhc--CcEEEEEEe
Confidence 577999999966431 11 1133457788888887 455555443
No 76
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.22 E-value=3.5e-10 Score=96.32 Aligned_cols=119 Identities=17% Similarity=0.215 Sum_probs=80.7
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~i 128 (229)
++.+|||+|||+|.++..+++.. +..+|+|+|+++ +. .+ .++.++ .+|+.+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~---------~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~-~~D~~~~------ 184 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAF---------PEAEVDAVDISPDALAVAEINIERHGLEDRVTLI-QSDLFAA------ 184 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-ECchhhc------
Confidence 45789999999999999999875 567999999996 21 12 246778 8886541
Q ss_pred HHHhCCCCccEEEeCCCCCCCCC-Ccc------cHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGM-REM------DHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~-~~~------d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~ 194 (229)
+++.+||+|++|++....+. ... +.. .-+.....++..+.++|+|||.+++.+.. ....+.
T Consensus 185 ---~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--~~~~v~ 259 (284)
T TIGR03533 185 ---LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--SMEALE 259 (284)
T ss_pred ---cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--CHHHHH
Confidence 34557999999976321111 000 000 11234567889999999999999998754 224566
Q ss_pred HHHHhh
Q psy1489 195 ESITRF 200 (229)
Q Consensus 195 ~~l~~~ 200 (229)
..+...
T Consensus 260 ~~~~~~ 265 (284)
T TIGR03533 260 EAYPDV 265 (284)
T ss_pred HHHHhC
Confidence 666553
No 77
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.22 E-value=1.5e-10 Score=96.86 Aligned_cols=122 Identities=20% Similarity=0.171 Sum_probs=81.9
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------PIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+.+|||+|||+|.++..+++.. +..+|+|+|+++ +. ...+.+++ ++|+.+. +...+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~---------~~~~v~~vDis~~al~~A~~N~~~~~~~~~-~~D~~~~-----l~~~~- 150 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL---------DGIELHAADIDPAAVRCARRNLADAGGTVH-EGDLYDA-----LPTAL- 150 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHHHHcCCEEE-Eeechhh-----cchhc-
Confidence 4589999999999999998875 456899999997 21 11245777 8887652 11112
Q ss_pred CCCccEEEeCCCCCCCCCC-cccH-------H-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489 134 DDKLDVVLSDMAPNATGMR-EMDH-------D-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~-~~d~-------~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~ 198 (229)
.+.||+|++|++....+.. ..+. . .-++....++..+.++|+|||.+++.+.. .+..++...++
T Consensus 151 ~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~-~~~~~v~~~l~ 229 (251)
T TIGR03704 151 RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE-RQAPLAVEAFA 229 (251)
T ss_pred CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-chHHHHHHHHH
Confidence 3579999999875332210 0000 0 11334567888899999999999987643 44567777776
Q ss_pred hh
Q psy1489 199 RF 200 (229)
Q Consensus 199 ~~ 200 (229)
.+
T Consensus 230 ~~ 231 (251)
T TIGR03704 230 RA 231 (251)
T ss_pred HC
Confidence 64
No 78
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.21 E-value=9.8e-11 Score=101.74 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=76.8
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
.++|.+|||.|||+|+++..++.. + .+++|+|+++ |. ..+++.+. .+|+.+..
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~-~----------~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~-~~D~~~l~---- 243 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM-G----------AKVIGCDIDWKMVAGARINLEHYGIEDFFVK-RGDATKLP---- 243 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh-C----------CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEE-ecchhcCC----
Confidence 467899999999999998876543 3 6899999997 31 23446777 88877632
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChH
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRP 191 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~ 191 (229)
+.++.||+|++|++.........+ ....+...++.++.++|+|||++++.+....+..
T Consensus 244 ----~~~~~~D~Iv~dPPyg~~~~~~~~--~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~ 301 (329)
T TIGR01177 244 ----LSSESVDAIATDPPYGRSTTAAGD--GLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLE 301 (329)
T ss_pred ----cccCCCCEEEECCCCcCcccccCC--chHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHH
Confidence 235789999999875221110011 1224456889999999999999988665444433
No 79
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.21 E-value=3.5e-11 Score=109.45 Aligned_cols=98 Identities=26% Similarity=0.259 Sum_probs=72.8
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CC-CCCeEEecCCCCChhHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PI-DGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~-~~~~~~~~~D~~~~~~~~~i 128 (229)
+.++.+|||+|||+|.++..+++..+ ++|+|+|+|+ +. .. ..+.+. .+|+.+..
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~----------~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~-~~d~~~~~----- 327 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFD----------VHVVGIDLSVNMISFALERAIGRKCSVEFE-VADCTKKT----- 327 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcC----------CEEEEEECCHHHHHHHHHHhhcCCCceEEE-EcCcccCC-----
Confidence 46788999999999999999887643 6899999996 21 11 246777 88877632
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
+++++||+|+|..... +. .....++.++.++|+|||.+++..+.
T Consensus 328 ---~~~~~fD~I~s~~~l~----h~-------~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 328 ---YPDNSFDVIYSRDTIL----HI-------QDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred ---CCCCCEEEEEECCccc----cc-------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 4567899999965431 11 12357889999999999999987543
No 80
>PRK08317 hypothetical protein; Provisional
Probab=99.19 E-value=9.1e-11 Score=96.37 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=72.6
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i 128 (229)
+.++.+|||+|||+|.++..++...+ +.++++|+|+++ +. ...++.+. ..|+.+..
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~--------~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~-~~d~~~~~----- 82 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVG--------PEGRVVGIDRSEAMLALAKERAAGLGPNVEFV-RGDADGLP----- 82 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC--------CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEE-ecccccCC-----
Confidence 46789999999999999999998875 567999999996 11 12356677 77776522
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
++++.||+|++..... .+.....++..+.++|+|||.+++..
T Consensus 83 ---~~~~~~D~v~~~~~~~-----------~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 83 ---FPDGSFDAVRSDRVLQ-----------HLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ---CCCCCceEEEEechhh-----------ccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 4467899999965431 11123467888999999999998754
No 81
>PRK05785 hypothetical protein; Provisional
Probab=99.19 E-value=6.8e-11 Score=97.48 Aligned_cols=88 Identities=23% Similarity=0.184 Sum_probs=63.1
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCC--CCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPI--DGAVVLSKCDFTQPDIQDRLVTILKDDK 136 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~--~~~~~~~~~D~~~~~~~~~i~~~~~~~~ 136 (229)
.++.+|||+|||||.++..+++..+ ++|+|+|+|+ |... .....+ ++|+.+. .+++++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~----------~~v~gvD~S~~Ml~~a~~~~~~~-~~d~~~l--------p~~d~s 110 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFK----------YYVVALDYAENMLKMNLVADDKV-VGSFEAL--------PFRDKS 110 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcC----------CEEEEECCCHHHHHHHHhccceE-EechhhC--------CCCCCC
Confidence 3578999999999999999887632 5999999998 4221 122345 6776552 256889
Q ss_pred ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC
Q psy1489 137 LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG 177 (229)
Q Consensus 137 ~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg 177 (229)
||+|++.... +.. .....+++++.++|||.
T Consensus 111 fD~v~~~~~l-----~~~------~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 111 FDVVMSSFAL-----HAS------DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred EEEEEecChh-----hcc------CCHHHHHHHHHHHhcCc
Confidence 9999996643 211 23467899999999993
No 82
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.18 E-value=1e-11 Score=96.01 Aligned_cols=98 Identities=23% Similarity=0.287 Sum_probs=67.6
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL 137 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~ 137 (229)
..++.+|||+|||+|.++..+++. + .+++|+|+++ +.....+... ..+... ...+++.|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~----------~~~~g~D~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~f 79 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-G----------FEVTGVDISPQMIEKRNVVFD-NFDAQD--------PPFPDGSF 79 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-T----------SEEEEEESSHHHHHHTTSEEE-EEECHT--------HHCHSSSE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-C----------CEEEEEECCHHHHhhhhhhhh-hhhhhh--------hhccccch
Confidence 467899999999999999998654 2 4999999997 2111222222 221112 11346799
Q ss_pred cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187 (229)
Q Consensus 138 D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~ 187 (229)
|+|+|..... + +.....++..+.++|||||.+++.....
T Consensus 80 D~i~~~~~l~--------~---~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 80 DLIICNDVLE--------H---LPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEEEESSGG--------G---SSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhHhhHHHHh--------h---cccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 9999966431 1 1135678999999999999999987654
No 83
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.18 E-value=1.2e-10 Score=102.96 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=68.1
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCC--CCeEEecCCCCChhHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PID--GAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~--~~~~~~~~D~~~~~~~~~i~~ 130 (229)
+++|.+|||+|||+|.++..+++..+ ++|+|+|+++ +. ... .+++. ..|..+
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g----------~~V~giDlS~~~l~~A~~~~~~l~v~~~-~~D~~~--------- 224 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYG----------VSVVGVTISAEQQKLAQERCAGLPVEIR-LQDYRD--------- 224 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHHHhccCeEEEE-ECchhh---------
Confidence 46889999999999999999988643 6999999997 21 111 24555 555433
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
+ +++||+|++.......+. ......+..+.++|||||.+++..+
T Consensus 225 -l-~~~fD~Ivs~~~~ehvg~---------~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 225 -L-NGQFDRIVSVGMFEHVGP---------KNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred -c-CCCCCEEEEeCchhhCCh---------HHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 2 468999998654321111 1234678889999999999998654
No 84
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.18 E-value=2.3e-11 Score=87.49 Aligned_cols=91 Identities=22% Similarity=0.354 Sum_probs=61.7
Q ss_pred eEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------PIDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 65 VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------~~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
|||+|||+|..+..+++... ..+..+++|+|+++ |. .-..++++ ++|+.+.. ..+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~------~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~-~~D~~~l~--------~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFD------AGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFV-QADARDLP--------FSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------SEEEEEES-HHHHHHHHHHSHHTTTTSEEE-ESCTTCHH--------HHS
T ss_pred CEEeecCCcHHHHHHHHHhh------hcccceEEEEECCHHHHHHHHHhchhcCCceEEE-ECCHhHCc--------ccC
Confidence 79999999999999998751 00447999999997 21 11378899 99998832 236
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCC
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA 178 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG 178 (229)
++||+|++.+.. ..+ ...+....+++.+.++|+|||
T Consensus 66 ~~~D~v~~~~~~-------~~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 66 GKFDLVVCSGLS-------LHH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSEEEEEE-TTG-------GGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEcCCc-------cCC-CCHHHHHHHHHHHHHHhCCCC
Confidence 799999995431 111 222345688999999999998
No 85
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.17 E-value=3.2e-10 Score=103.73 Aligned_cols=132 Identities=14% Similarity=0.204 Sum_probs=88.6
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~i~ 129 (229)
+.+|||+|||+|.++..++... +..+|+|+|+++ +. .+ .++.++ ++|+.+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~---------p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~-~~D~~~-------- 200 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL---------PNANVIATDISLDAIEVAKSNAIKYEVTDRIQII-HSNWFE-------- 200 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC---------CCCeEEEEECCHHHHHHHHHHHHHcCCccceeee-ecchhh--------
Confidence 4689999999999999998875 567999999996 21 11 246667 777543
Q ss_pred HHhCCCCccEEEeCCCCCCCCCC--------cccHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMR--------EMDHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~--------~~d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~ 194 (229)
.+++++||+|+||++.-..... ..+.. .-++....++..+.++|+|||.+++.+-. .....+.
T Consensus 201 -~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-~q~~~v~ 278 (506)
T PRK01544 201 -NIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-KQEEAVT 278 (506)
T ss_pred -hCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-chHHHHH
Confidence 1345689999998763211110 00110 12234557788899999999999987633 3345566
Q ss_pred HHHHhh-CCeeEEEcCCCCC
Q psy1489 195 ESITRF-YSQVKILKPPSSR 213 (229)
Q Consensus 195 ~~l~~~-F~~v~~~kp~~sr 213 (229)
..+... |..+.+.|.-+.+
T Consensus 279 ~~~~~~g~~~~~~~~D~~g~ 298 (506)
T PRK01544 279 QIFLDHGYNIESVYKDLQGH 298 (506)
T ss_pred HHHHhcCCCceEEEecCCCC
Confidence 666553 7778888876655
No 86
>PRK06922 hypothetical protein; Provisional
Probab=99.17 E-value=1.3e-10 Score=107.19 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=72.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-------C--CCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-------I--DGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-------~--~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
++.+|||+|||+|.++..+++.. +.++|+|+|+++ |.. . .++.++ ++|..+ +..
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~---------P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I-~gDa~d------Lp~ 481 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET---------EDKRIYGIDISENVIDTLKKKKQNEGRSWNVI-KGDAIN------LSS 481 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEE-EcchHh------Ccc
Confidence 57899999999999998888875 678999999997 311 1 234556 677654 222
Q ss_pred HhCCCCccEEEeCCCCCC--CCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 131 ILKDDKLDVVLSDMAPNA--TGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~--~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
.+++++||+|+++..... ..++..+.......+..+++.+.++|||||.+++..
T Consensus 482 ~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 482 SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 356788999998653210 000000000012345688999999999999999864
No 87
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.17 E-value=1.3e-10 Score=92.15 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=71.1
Q ss_pred ccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 58 FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 58 ~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
.+++|.+|||||||.|.+..+|.+. .+...+|+|+++-. ...++.++ ++|+.+. + ..++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~----------k~v~g~GvEid~~~v~~cv~rGv~Vi-q~Dld~g-----L-~~f~ 72 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDE----------KQVDGYGVEIDPDNVAACVARGVSVI-QGDLDEG-----L-ADFP 72 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHh----------cCCeEEEEecCHHHHHHHHHcCCCEE-ECCHHHh-----H-hhCC
Confidence 4679999999999999999888875 34789999999721 12578888 9998762 2 3488
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
+++||.|+.+- ....+.....+|.++ |+-|...++..
T Consensus 73 d~sFD~VIlsq-----------tLQ~~~~P~~vL~Em---lRVgr~~IVsF 109 (193)
T PF07021_consen 73 DQSFDYVILSQ-----------TLQAVRRPDEVLEEM---LRVGRRAIVSF 109 (193)
T ss_pred CCCccEEehHh-----------HHHhHhHHHHHHHHH---HHhcCeEEEEe
Confidence 99999999843 344455566777777 45566766644
No 88
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.16 E-value=2.1e-11 Score=87.28 Aligned_cols=88 Identities=23% Similarity=0.267 Sum_probs=49.1
Q ss_pred EeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-C-------C--CCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-I-------D--GAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 66 LDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-~-------~--~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
||+|||+|.++..+++.. +..+++|+|+|+ |.. . . ..... ..+..+ +......
T Consensus 1 LdiGcG~G~~~~~l~~~~---------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------PDARYTGVDISPSMLERARERLAELGNDNFERL-RFDVLD------LFDYDPP 64 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------EEEEEEEESSSSTTSTTCCCHHHCT---EEEE-E--SSS---------CCC-
T ss_pred CEeCccChHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEE-EeecCC------hhhcccc
Confidence 799999999999999885 557999999998 321 1 1 11222 222222 1111122
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEE
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADC 180 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~ 180 (229)
++||+|++.... .+. .....+++.+.++|+|||.|
T Consensus 65 ~~fD~V~~~~vl--------~~l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVL--------HHL---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TT--------S-----S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhH--------hhh---hhHHHHHHHHHHHcCCCCCC
Confidence 589999996543 122 34557899999999999986
No 89
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.16 E-value=1.7e-10 Score=93.73 Aligned_cols=92 Identities=22% Similarity=0.281 Sum_probs=67.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-CCeEEecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-GAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-~~~~~~~~D~~~~~~~~ 126 (229)
+.++++|||+|||+|..+..+++..+ +.++|+|+|+++ +. ... +++++ .+|..+..
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~--------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~-~~d~~~~~--- 137 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIE--------RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVY-HGDGKRGL--- 137 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-ECCcccCC---
Confidence 46789999999999999999998874 467999999996 21 122 36777 78876521
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
....+||+|+++.... + ...++.+.|+|||.+++-+
T Consensus 138 -----~~~~~fD~Ii~~~~~~--------~---------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 -----EKHAPFDAIIVTAAAS--------T---------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred -----ccCCCccEEEEccCcc--------h---------hhHHHHHhcCcCcEEEEEE
Confidence 1245899999976421 1 1235778899999998855
No 90
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.16 E-value=1.4e-10 Score=101.83 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=81.6
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
.+..+||||||+|.++..+|++. |...++|+|+++ + ..+.++.++ ++|+.. +.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~---------P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i-~~DA~~------ll 185 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNN---------PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLII-NYDARL------LL 185 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhC---------CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEE-ECCHHH------hh
Confidence 46799999999999999999986 678999999985 2 235678888 888654 33
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHH
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l 197 (229)
..++++.+|.|++..+..+.. ..| +. -.....+.++.++|+|||.+.+.+....-....++.+
T Consensus 186 ~~~~~~s~D~I~lnFPdPW~K---krH-RR-lv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~ 248 (390)
T PRK14121 186 ELLPSNSVEKIFVHFPVPWDK---KPH-RR-VISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELF 248 (390)
T ss_pred hhCCCCceeEEEEeCCCCccc---cch-hh-ccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHH
Confidence 447788999999976421111 111 11 1235789999999999999998775433333333333
No 91
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=6.6e-10 Score=97.38 Aligned_cols=128 Identities=25% Similarity=0.367 Sum_probs=87.8
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC---------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY---------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~---------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
.++|.+|||+|++||+-|.++++.+. +..+.|+++|+++ +. .+.++..+ ..|....
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~-------~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~-~~d~~~~----- 220 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELME-------NEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVV-NKDARRL----- 220 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcC-------CCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEE-ecccccc-----
Confidence 56899999999999999999999874 1235679999997 11 23455555 6664431
Q ss_pred HHHHhC-CCCccEEEeCCCCCCCCCCcc-----------cHHHHHHHHHHHHHHHHHcccCCCEEEEee---cCCCChHH
Q psy1489 128 LVTILK-DDKLDVVLSDMAPNATGMREM-----------DHDLITQLAIAVIRFAVTYSKPGADCLIKI---WDGRNRPQ 192 (229)
Q Consensus 128 i~~~~~-~~~~D~V~sd~~~~~~g~~~~-----------d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~---~~~~~~~~ 192 (229)
..... ..+||.|+.|+++..+|..-. +......++.++|..+.++|||||.++-.+ ...++...
T Consensus 221 -~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~v 299 (355)
T COG0144 221 -AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEV 299 (355)
T ss_pred -cccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHH
Confidence 11122 236999999999877776422 222345567799999999999999998554 33344444
Q ss_pred HHHHHHhh
Q psy1489 193 LEESITRF 200 (229)
Q Consensus 193 ~~~~l~~~ 200 (229)
+...+++.
T Consensus 300 V~~~L~~~ 307 (355)
T COG0144 300 VERFLERH 307 (355)
T ss_pred HHHHHHhC
Confidence 55666664
No 92
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.13 E-value=5.2e-10 Score=90.11 Aligned_cols=122 Identities=18% Similarity=0.261 Sum_probs=80.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
+.++.+|||+|||+|.++..+++.. +.++|+++|+++ +. .+.+++++ .+|+.+.
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~---------~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~-~~d~~~~----- 102 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLC---------PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVI-EGSAPEC----- 102 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE-ECchHHH-----
Confidence 4578999999999999999988654 567999999997 21 23457777 7776431
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEE
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKI 206 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~ 206 (229)
+. .+ ...+|.++.+... + ...++..+.++|+|||.|++..........+.+.++.. ...+++
T Consensus 103 ~~-~~-~~~~d~v~~~~~~--------~-------~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (196)
T PRK07402 103 LA-QL-APAPDRVCIEGGR--------P-------IKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEV 165 (196)
T ss_pred Hh-hC-CCCCCEEEEECCc--------C-------HHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceE
Confidence 11 12 2346777775310 1 24678889999999999998776543334444555443 345555
Q ss_pred EcCCCC
Q psy1489 207 LKPPSS 212 (229)
Q Consensus 207 ~kp~~s 212 (229)
+....+
T Consensus 166 ~~~~~~ 171 (196)
T PRK07402 166 VQAAVN 171 (196)
T ss_pred EEEEhh
Confidence 554433
No 93
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.13 E-value=5.2e-10 Score=93.59 Aligned_cols=114 Identities=21% Similarity=0.220 Sum_probs=72.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC--CCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP--IDGAVVLSKCDFTQPDIQDRLVTILKDD 135 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~--~~~~~~~~~~D~~~~~~~~~i~~~~~~~ 135 (229)
..++.+|||+|||+|..+..+++. + ..+|+|+|+++ +.. ..++. ..++.+. +.-...+.
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g---------~~~v~giDis~~~l~~A~~n~~---~~~~~~~-----~~~~~~~~ 178 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G---------AKKVLAVDIDPQAVEAARENAE---LNGVELN-----VYLPQGDL 178 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C---------CCeEEEEECCHHHHHHHHHHHH---HcCCCce-----EEEccCCC
Confidence 357899999999999988876654 2 34799999997 211 01110 0111000 00000112
Q ss_pred CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCee
Q psy1489 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQV 204 (229)
Q Consensus 136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v 204 (229)
+||+|+++... +.....+..+.++|+|||.+++..+.......+...+... |..+
T Consensus 179 ~fD~Vvani~~--------------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 179 KADVIVANILA--------------NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLD 234 (250)
T ss_pred CcCEEEEcCcH--------------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEE
Confidence 69999997531 1234567889999999999999766666667777777775 5433
No 94
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.13 E-value=1.8e-10 Score=94.78 Aligned_cols=112 Identities=18% Similarity=0.155 Sum_probs=74.5
Q ss_pred CccchhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-C----CCCCCeE
Q psy1489 40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-Y----PIDGAVV 113 (229)
Q Consensus 40 ~~~~r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-~----~~~~~~~ 113 (229)
.|++|+++||.++...+.+..++.+|||+|||||+|+..+++. +..+|+|+|+++ | . ..+.+..
T Consensus 54 ~~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~----------ga~~v~avD~~~~~l~~~l~~~~~v~~ 123 (228)
T TIGR00478 54 LFVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK----------GAKEVYGVDVGYNQLAEKLRQDERVKV 123 (228)
T ss_pred chhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc----------CCCEEEEEeCCHHHHHHHHhcCCCeeE
Confidence 3899999999999999886667899999999999999999986 346999999998 2 2 1223322
Q ss_pred EecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 114 LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 114 ~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
....|+..... ..+. .+-..+|++++.. ..++..+...|+| |.+++-+
T Consensus 124 ~~~~ni~~~~~-~~~~--~d~~~~DvsfiS~-------------------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 124 LERTNIRYVTP-ADIF--PDFATFDVSFISL-------------------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred eecCCcccCCH-hHcC--CCceeeeEEEeeh-------------------HhHHHHHHHHhCc-CeEEEEc
Confidence 22556653221 1111 0112456555522 1245667788888 8776543
No 95
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.12 E-value=2.3e-10 Score=97.53 Aligned_cols=108 Identities=19% Similarity=0.315 Sum_probs=71.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
..+|.+|||+|||+|.+++.+++. | +.+|+|+|++|.. .+.. .+. .....+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-G---------A~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~-v~~~~~------ 220 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-G---------AKKVVAIDIDPLAVEAARENAELNGVED-RIE-VSLSED------ 220 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-T---------BSEEEEEESSCHHHHHHHHHHHHTT-TT-CEE-ESCTSC------
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-C---------CCeEEEecCCHHHHHHHHHHHHHcCCCe-eEE-EEEecc------
Confidence 457899999999999999997764 3 4699999999831 1222 121 111111
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCC
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~ 202 (229)
....+||+|++|... ..+...+..+.++|+|||.++++-.-......+.+.+.+-|.
T Consensus 221 ----~~~~~~dlvvANI~~--------------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~ 277 (295)
T PF06325_consen 221 ----LVEGKFDLVVANILA--------------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFE 277 (295)
T ss_dssp ----TCCS-EEEEEEES-H--------------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEE
T ss_pred ----cccccCCEEEECCCH--------------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCE
Confidence 224789999997631 223345566788999999999987666667778877765343
No 96
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.12 E-value=2.1e-09 Score=84.75 Aligned_cols=108 Identities=21% Similarity=0.290 Sum_probs=82.8
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~ 127 (229)
+++|+.++|+|||+|..+..++ +.+ |.++|+|+|.++- ...++++++ .+|.-+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a-~~~--------p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv-~g~Ap~------ 95 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWA-LAG--------PSGRVIAIERDEEALELIERNAARFGVDNLEVV-EGDAPE------ 95 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHH-HhC--------CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEE-eccchH------
Confidence 5789999999999999999999 566 8899999998761 125678888 777544
Q ss_pred HHHHhCCC-CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489 128 LVTILKDD-KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200 (229)
Q Consensus 128 i~~~~~~~-~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~ 200 (229)
.+++. .+|.|+..+.- . ...+++.+...|||||++|+..-.-+.....++.+++.
T Consensus 96 ---~L~~~~~~daiFIGGg~------~---------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 96 ---ALPDLPSPDAIFIGGGG------N---------IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred ---hhcCCCCCCEEEECCCC------C---------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 23333 69999996641 1 24678889999999999999876666666777777765
No 97
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.11 E-value=2.7e-10 Score=97.15 Aligned_cols=91 Identities=23% Similarity=0.170 Sum_probs=64.4
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
+.+|||+|||+|..+.++++. + .+|+|+|+++ +. .+ ++.+. ..|+....
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~-g----------~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~-~~D~~~~~------- 180 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL-G----------FDVTAVDINQQSLENLQEIAEKENL-NIRTG-LYDINSAS------- 180 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC-C----------CEEEEEECCHHHHHHHHHHHHHcCC-ceEEE-Eechhccc-------
Confidence 459999999999999999875 2 5999999997 21 11 45555 66655421
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+ +++||+|++.+.. ++...+....++..+.++|+|||.+++.
T Consensus 181 -~-~~~fD~I~~~~vl---------~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 181 -I-QEEYDFILSTVVL---------MFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred -c-cCCccEEEEcchh---------hhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 5689999997643 1111123457889999999999996653
No 98
>PRK04457 spermidine synthase; Provisional
Probab=99.11 E-value=1.2e-09 Score=92.05 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=86.3
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------C----CCCCeEEecCCCCChhHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------P----IDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~----~~~~~~~~~~D~~~~~~~~~ 127 (229)
.++.+|||||||.|.++..+++.. |..+|++||+++ +. . .++++++ .+|..+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~---------p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~-~~Da~~~----- 129 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL---------PDTRQTAVEINPQVIAVARNHFELPENGERFEVI-EADGAEY----- 129 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEE-ECCHHHH-----
Confidence 456899999999999999998876 678999999987 21 1 2457777 7775541
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC-ChHHHHHHHHhhCCe-eE
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR-NRPQLEESITRFYSQ-VK 205 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~-~~~~~~~~l~~~F~~-v~ 205 (229)
+. .. .++||+|++|.... .+.. .+. .....+..+.+.|+|||.+++..+... ....+++.++..|.. +.
T Consensus 130 l~-~~-~~~yD~I~~D~~~~-~~~~--~~l----~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~ 200 (262)
T PRK04457 130 IA-VH-RHSTDVILVDGFDG-EGII--DAL----CTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVL 200 (262)
T ss_pred HH-hC-CCCCCEEEEeCCCC-CCCc--ccc----CcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEE
Confidence 21 12 35799999986321 1111 111 124678889999999999998766543 356778888888975 44
Q ss_pred EE
Q psy1489 206 IL 207 (229)
Q Consensus 206 ~~ 207 (229)
++
T Consensus 201 ~~ 202 (262)
T PRK04457 201 EL 202 (262)
T ss_pred EE
Confidence 44
No 99
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.10 E-value=5.4e-10 Score=96.15 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=73.2
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHHHHH
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.+|||+|||+|.++..++... +..+|+|+|+++ +. .+ .++.++ .+|+.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~---------p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~-~~D~~~--------- 195 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF---------PDAEVDAVDISPDALAVAEINIERHGLEDRVTLI-ESDLFA--------- 195 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEE-ECchhh---------
Confidence 689999999999999999875 567999999997 11 12 247778 888654
Q ss_pred HhCCCCccEEEeCCCCCCCCC-CcccH------H-------HHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 131 ILKDDKLDVVLSDMAPNATGM-REMDH------D-------LITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~-~~~d~------~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
.+++.+||+|++|++.-.... ..... . .-+.....++..+.++|+|||.+++.+..
T Consensus 196 ~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 196 ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 134567999999875321110 00000 0 11345567889999999999999997654
No 100
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=7.8e-10 Score=93.72 Aligned_cols=120 Identities=21% Similarity=0.312 Sum_probs=76.4
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.++|.+|||+|||+|.+++.+++. +...|+|+|+.|.. ...++....+.-..+ ...
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL----------GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~------~~~ 223 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL----------GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFL------LLE 223 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc----------CCceEEEecCCHHHHHHHHHHHHHcCCchhhhccccc------chh
Confidence 358899999999999999997765 35789999999831 112222000000011 111
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh-hCCeeEEEc
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR-FYSQVKILK 208 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~-~F~~v~~~k 208 (229)
....++||+|++|.- .+........+.+.|||||+++++-.-....+.+.+.+.+ -|.-+.+..
T Consensus 224 ~~~~~~~DvIVANIL--------------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 224 VPENGPFDVIVANIL--------------AEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred hcccCcccEEEehhh--------------HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEe
Confidence 123469999999652 1223456677899999999999875444445667766633 466555543
No 101
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.09 E-value=2.6e-10 Score=90.64 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=81.9
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC---------CCCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP---------IYPIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~---------~~~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
-.++||+|||.|.++..|+.+. .+++++|+++ +...+++.++ +.|+.+ ..
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC-----------d~LlavDis~~Al~~Ar~Rl~~~~~V~~~-~~dvp~---------~~ 102 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC-----------DRLLAVDISPRALARARERLAGLPHVEWI-QADVPE---------FW 102 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE-----------EEEEEEES-HHHHHHHHHHTTT-SSEEEE-ES-TTT-----------
T ss_pred cceeEecCCCccHHHHHHHHhh-----------CceEEEeCCHHHHHHHHHhcCCCCCeEEE-ECcCCC---------CC
Confidence 4689999999999999999885 3899999996 2345789999 999866 25
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHH-HHHHHHHHHHHHHHcccCCCEEEEeecC---------CCChHHHHHHHHhhCC
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDL-ITQLAIAVIRFAVTYSKPGADCLIKIWD---------GRNRPQLEESITRFYS 202 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~-~~~~~~~~l~~~~~~LkpgG~~v~~~~~---------~~~~~~~~~~l~~~F~ 202 (229)
+++.||+|+..... .+. ..+....++..+...|+|||.+|+-.+. ....+.+.++++..|.
T Consensus 103 P~~~FDLIV~SEVl---------YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~ 173 (201)
T PF05401_consen 103 PEGRFDLIVLSEVL---------YYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLT 173 (201)
T ss_dssp -SS-EEEEEEES-G---------GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred CCCCeeEEEEehHh---------HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhh
Confidence 68899999985422 111 1234557788899999999999987754 2246788899999998
Q ss_pred eeEEEc
Q psy1489 203 QVKILK 208 (229)
Q Consensus 203 ~v~~~k 208 (229)
+|....
T Consensus 174 ~~~~~~ 179 (201)
T PF05401_consen 174 EVERVE 179 (201)
T ss_dssp EEEEEE
T ss_pred heeEEE
Confidence 887764
No 102
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.09 E-value=2.5e-09 Score=91.82 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=75.7
Q ss_pred CccchhhhhhHhhhhh--cCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----C----
Q psy1489 40 NYRCRSAFKLLEIDSK--IKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----P---- 107 (229)
Q Consensus 40 ~~~~r~~~kl~~i~~~--~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~---- 107 (229)
-|..|.-..+++-... ...+.++.+|||||||+|.++..+++... ...+|+|+|+|+ |. .
T Consensus 40 Yy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~--------~~~~~~~iDiS~~mL~~a~~~l~~~ 111 (301)
T TIGR03438 40 YYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALR--------QPARYVPIDISADALKESAAALAAD 111 (301)
T ss_pred cccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhc--------cCCeEEEEECCHHHHHHHHHHHHhh
Confidence 3566665555432111 12245678999999999999999998762 136899999997 31 1
Q ss_pred CCC--CeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 108 IDG--AVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 108 ~~~--~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
.++ +.++ ++|+.+... +..........+++++.+. ...+. +.....|+.+.++|+|||.|++-+.
T Consensus 112 ~p~~~v~~i-~gD~~~~~~---~~~~~~~~~~~~~~~gs~~-----~~~~~----~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 112 YPQLEVHGI-CADFTQPLA---LPPEPAAGRRLGFFPGSTI-----GNFTP----EEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred CCCceEEEE-EEcccchhh---hhcccccCCeEEEEecccc-----cCCCH----HHHHHHHHHHHHhcCCCCEEEEecc
Confidence 233 4557 888876310 1110111122334443221 11221 2345788999999999999998664
Q ss_pred C
Q psy1489 186 D 186 (229)
Q Consensus 186 ~ 186 (229)
.
T Consensus 179 ~ 179 (301)
T TIGR03438 179 L 179 (301)
T ss_pred C
Confidence 3
No 103
>KOG1270|consensus
Probab=99.06 E-value=5.4e-10 Score=92.01 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=64.1
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC-C-----CeEEecCCCCChhH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID-G-----AVVLSKCDFTQPDI 124 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~-~-----~~~~~~~D~~~~~~ 124 (229)
|++|||+|||.|-+++.||+. | ..|+|||+++ | .|.. . +.+. ..|...
T Consensus 90 g~~ilDvGCGgGLLSepLArl-g----------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~-~~~~E~--- 154 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-G----------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYE-DTDVEG--- 154 (282)
T ss_pred CceEEEeccCccccchhhHhh-C----------CeeEeecccHHHHHHHHHhhhcCchhccccceeeehh-hcchhh---
Confidence 488999999999999999976 3 6999999996 2 1111 1 1222 222221
Q ss_pred HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
+ .+.||.|+|. +...+...+...+..+.++|||||.+++...
T Consensus 155 -------~-~~~fDaVvcs-----------evleHV~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 155 -------L-TGKFDAVVCS-----------EVLEHVKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred -------c-ccccceeeeH-----------HHHHHHhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 2 2459999993 3455556677889999999999999988653
No 104
>PHA03411 putative methyltransferase; Provisional
Probab=99.06 E-value=1.9e-09 Score=90.48 Aligned_cols=120 Identities=16% Similarity=0.093 Sum_probs=80.7
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PIDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
.+.+|||+|||+|.++..++.+. +..+|+|+|+++ |. ..+++.++ .+|+.+. ..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~---------~~~~V~gVDisp~al~~Ar~n~~~v~~v-~~D~~e~---------~~~ 124 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRC---------KPEKIVCVELNPEFARIGKRLLPEAEWI-TSDVFEF---------ESN 124 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhC---------CCCEEEEEECCHHHHHHHHHhCcCCEEE-ECchhhh---------ccc
Confidence 45799999999999999888764 346999999997 21 24568888 8887652 224
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHH-------H--HHHHHHHHHHHcccCCCEEEEeecCCC-------ChHHHHHHHH
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLIT-------Q--LAIAVIRFAVTYSKPGADCLIKIWDGR-------NRPQLEESIT 198 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~-------~--~~~~~l~~~~~~LkpgG~~v~~~~~~~-------~~~~~~~~l~ 198 (229)
..||+|++|++.......+....... + .....+.....+|+|+|.+.+. +.+. ...++...++
T Consensus 125 ~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~y~~sl~~~~y~~~l~ 203 (279)
T PHA03411 125 EKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPYYDGTMKSNKYLKWSK 203 (279)
T ss_pred CCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-EeccccccccCCHHHHHHHHH
Confidence 68999999987643222222111111 0 1356777788899999987764 3321 3566777776
Q ss_pred hh
Q psy1489 199 RF 200 (229)
Q Consensus 199 ~~ 200 (229)
+.
T Consensus 204 ~~ 205 (279)
T PHA03411 204 QT 205 (279)
T ss_pred hc
Confidence 64
No 105
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=3.1e-09 Score=90.28 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=82.7
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+|||||||+|..+..++... +...|+|+|+|+- ..+.++.++ ++|+.+. +
T Consensus 113 ~ilDlGTGSG~iai~la~~~---------~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~-~~dlf~~---------~ 173 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---------PDAEVIAVDISPDALALARENAERNGLVRVLVV-QSDLFEP---------L 173 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---------cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEE-eeecccc---------c
Confidence 79999999999999999886 6789999999971 012234455 5565552 3
Q ss_pred CCCCccEEEeCCCCCCCC-CCc------ccHH-------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHH
Q psy1489 133 KDDKLDVVLSDMAPNATG-MRE------MDHD-------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESIT 198 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g-~~~------~d~~-------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~ 198 (229)
.++||+|+||++--... ... .+.. .-++....++..+.++|+|||.+++.+-... ...+.+.+.
T Consensus 174 -~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q-~~~v~~~~~ 251 (280)
T COG2890 174 -RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ-GEAVKALFE 251 (280)
T ss_pred -CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc-HHHHHHHHH
Confidence 23899999998732111 000 0111 1244666889999999999999998774333 355556555
Q ss_pred hh--CCeeEEEcC
Q psy1489 199 RF--YSQVKILKP 209 (229)
Q Consensus 199 ~~--F~~v~~~kp 209 (229)
.. |..+...|.
T Consensus 252 ~~~~~~~v~~~~d 264 (280)
T COG2890 252 DTGFFEIVETLKD 264 (280)
T ss_pred hcCCceEEEEEec
Confidence 43 455666654
No 106
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.04 E-value=5.6e-10 Score=90.95 Aligned_cols=101 Identities=21% Similarity=0.210 Sum_probs=71.9
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.++.+|||+|||+|.++..+++..+ ..++++++|+++ +. ...++.+. .+|+.+..
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~--------~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~-~~d~~~~~------- 101 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAP--------DRGKVTGVDFSSEMLEVAKKKSELPLNIEFI-QADAEALP------- 101 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcC--------CCceEEEEECCHHHHHHHHHHhccCCCceEE-ecchhcCC-------
Confidence 3688999999999999999998763 226899999986 21 11346777 77776521
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~ 188 (229)
++++.||+|++.... +.. .....+++.+.++|+|||.+++..+...
T Consensus 102 -~~~~~~D~i~~~~~~-----~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 102 -FEDNSFDAVTIAFGL-----RNV------TDIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred -CCCCcEEEEEEeeee-----CCc------ccHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 345689999986532 111 1234678899999999999987665443
No 107
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.04 E-value=7.4e-10 Score=90.80 Aligned_cols=93 Identities=15% Similarity=0.075 Sum_probs=66.3
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHHHHH
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
++|||+|||+|.++..+++.. +..+|+|+|+++ +. .+ ..+.++ ..|+.+..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~---------~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~-~~d~~~~~------- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH---------PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIF-YRDSAKDP------- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEE-ecccccCC-------
Confidence 379999999999999999876 457999999986 21 01 235677 77775421
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
+ .+.||+|++.... .........+..+.++|+|||.+++..+
T Consensus 64 -~-~~~fD~I~~~~~l-----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 64 -F-PDTYDLVFGFEVI-----------HHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred -C-CCCCCEeehHHHH-----------HhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 2 3579999985432 1112234788899999999999987653
No 108
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.04 E-value=1.9e-09 Score=88.78 Aligned_cols=100 Identities=23% Similarity=0.270 Sum_probs=71.1
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----C------CCCCeEEecCCCCChhHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----P------IDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~------~~~~~~~~~~D~~~~~~~~~ 127 (229)
.++.+|||+|||+|.++..++...+ +..+++++|+++ +. . ...+.+. .+|+.+..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~--------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~---- 116 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVG--------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFV-QGDAEALP---- 116 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcC--------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEE-ecccccCC----
Confidence 3678999999999999999988763 257999999986 20 1 1346677 77776631
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~ 187 (229)
++.+.||+|+++... +... .....+..+.++|+|||.+++..+..
T Consensus 117 ----~~~~~~D~I~~~~~l-----~~~~------~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 117 ----FPDNSFDAVTIAFGL-----RNVP------DIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ----CCCCCccEEEEeccc-----ccCC------CHHHHHHHHHHhccCCcEEEEEEecC
Confidence 345689999986532 1111 13467888999999999998765543
No 109
>PRK00811 spermidine synthase; Provisional
Probab=99.03 E-value=2.4e-09 Score=91.22 Aligned_cols=141 Identities=10% Similarity=0.046 Sum_probs=91.0
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---------------CCCCCeEEecCCCCChh
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------------PIDGAVVLSKCDFTQPD 123 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------------~~~~~~~~~~~D~~~~~ 123 (229)
+...+||+||||.|..+..++++. +..+|++||+++ +. .-++++++ .+|...
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~---------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~-~~Da~~-- 142 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP---------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELV-IGDGIK-- 142 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC---------CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEE-ECchHH--
Confidence 346799999999999999988753 346899999997 21 12356666 676544
Q ss_pred HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC----CChHHHHHHHHh
Q psy1489 124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG----RNRPQLEESITR 199 (229)
Q Consensus 124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~----~~~~~~~~~l~~ 199 (229)
.+.. .+++||+|++|..... +. ..+. .....++.+.+.|+|||.+++..... .....+...++.
T Consensus 143 ---~l~~--~~~~yDvIi~D~~dp~-~~--~~~l----~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~ 210 (283)
T PRK00811 143 ---FVAE--TENSFDVIIVDSTDPV-GP--AEGL----FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKE 210 (283)
T ss_pred ---HHhh--CCCcccEEEECCCCCC-Cc--hhhh----hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 1221 3568999999975321 11 1111 12467788999999999998753221 124556677888
Q ss_pred hCCeeEEEcC-CCCCCCCceEEEEec
Q psy1489 200 FYSQVKILKP-PSSRSHSAELFLLGR 224 (229)
Q Consensus 200 ~F~~v~~~kp-~~sr~~s~E~Y~v~~ 224 (229)
.|..|..+.. ..+-+...-.|++|-
T Consensus 211 ~F~~v~~~~~~vp~~~~~~w~f~~as 236 (283)
T PRK00811 211 VFPIVRPYQAAIPTYPSGLWSFTFAS 236 (283)
T ss_pred HCCCEEEEEeECCcccCchheeEEee
Confidence 8988887763 233333334556654
No 110
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.02 E-value=3.2e-09 Score=94.27 Aligned_cols=123 Identities=20% Similarity=0.166 Sum_probs=78.2
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCC--CCeEEecCCCCChhHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPID--GAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~--~~~~~~~~D~~~~~~~~ 126 (229)
.+|.+|||+|||+|+++..++.. +..+|++||+++ + ..+. +++++ ++|+.+.
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~----------ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i-~~D~~~~---- 283 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG----------GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV-RDDVFKL---- 283 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEE-EccHHHH----
Confidence 46889999999999998876542 345999999996 1 1232 46778 8887552
Q ss_pred HHHHHh-CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-CChHHHHHHHHhh
Q psy1489 127 RLVTIL-KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-RNRPQLEESITRF 200 (229)
Q Consensus 127 ~i~~~~-~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-~~~~~~~~~l~~~ 200 (229)
+.... .+++||+|++|++.....-. ...........++..+.++|+|||.+++...++ -..+++.+.+...
T Consensus 284 -l~~~~~~~~~fDlVilDPP~f~~~k~--~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~a 356 (396)
T PRK15128 284 -LRTYRDRGEKFDVIVMDPPKFVENKS--QLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADA 356 (396)
T ss_pred -HHHHHhcCCCCCEEEECCCCCCCChH--HHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHH
Confidence 22211 24689999999875222110 111112234466778999999999998754332 2445566655443
No 111
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.02 E-value=6.5e-10 Score=101.13 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=71.2
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.++.+|||+|||+|.++..+++.. .+|+|+|+++ |. ..+++.++ .+|+.+.. .
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~-----------~~v~giD~s~~~l~~a~~~~~~~~~i~~~-~~d~~~~~------~ 97 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKA-----------GQVIALDFIESVIKKNESINGHYKNVKFM-CADVTSPD------L 97 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhC-----------CEEEEEeCCHHHHHHHHHHhccCCceEEE-Eecccccc------c
Confidence 356799999999999999999863 4899999997 21 12457777 88876421 1
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
.+++++||+|+++.+.. .........++.++.++|+|||.+++..
T Consensus 98 ~~~~~~fD~I~~~~~l~---------~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 98 NISDGSVDLIFSNWLLM---------YLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CCCCCCEEEEehhhhHH---------hCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 14567899999976431 1111224578899999999999998864
No 112
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=2.3e-09 Score=88.25 Aligned_cols=136 Identities=15% Similarity=0.282 Sum_probs=97.2
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCC-CeEEecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDG-AVVLSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~-~~~~~~~D~~~~~~~~ 126 (229)
+.+|++|+|.|.|+|.++.+|+..++ +.|+|+.+|+.+ .. .+.+ +++. .+|+.+.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg--------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~-~~Dv~~~---- 158 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVG--------PEGHVTTYEIREDFAKTARENLSEFGLGDRVTLK-LGDVREG---- 158 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhC--------CCceEEEEEecHHHHHHHHHHHHHhccccceEEE-ecccccc----
Confidence 56899999999999999999999887 889999999986 10 1222 6666 7777763
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeE
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVK 205 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~ 205 (229)
..+..||.|+.|++- + ..++..+.+.|+|||.+++....-.+.....+.|+.. |-+++
T Consensus 159 -----~~~~~vDav~LDmp~---------P-------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 159 -----IDEEDVDAVFLDLPD---------P-------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred -----ccccccCEEEEcCCC---------h-------HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 334589999999952 2 2567778999999999988665555556666666655 43222
Q ss_pred E---------EcCCCCCCC----CceEEEEeccCCC
Q psy1489 206 I---------LKPPSSRSH----SAELFLLGRGFKG 228 (229)
Q Consensus 206 ~---------~kp~~sr~~----s~E~Y~v~~~~~~ 228 (229)
. +++...|+. -+-.|+|...+.+
T Consensus 218 ~~E~l~R~~~v~~~~~RP~~~~v~HTgyivf~R~~~ 253 (256)
T COG2519 218 AVETLVRRWEVRKEATRPETRMVGHTGYIVFARKLG 253 (256)
T ss_pred hheeeeheeeecccccCcccccccceeEEEEEeecc
Confidence 2 335566664 5667888776653
No 113
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.00 E-value=1.1e-08 Score=97.21 Aligned_cols=108 Identities=18% Similarity=0.102 Sum_probs=73.9
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCC--CCCeEEecCCCCChhHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPI--DGAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~--~~~~~~~~~D~~~~~~~~ 126 (229)
.+|.+|||||||+|+++..++.. +..+|++||+++ + ..+ .+++++ ++|+.+.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~----------Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i-~~D~~~~---- 601 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG----------GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLI-QADCLAW---- 601 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC----------CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEE-EccHHHH----
Confidence 35889999999999999998874 345899999996 1 122 246778 8886541
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
+.. + +++||+|++|++.....-...+..........++..+.++|+|||.+++..-
T Consensus 602 -l~~-~-~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 602 -LKE-A-REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred -HHH-c-CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 211 2 4689999999874332211112223334455678889999999999987653
No 114
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.00 E-value=1.2e-09 Score=89.30 Aligned_cols=98 Identities=16% Similarity=0.067 Sum_probs=67.9
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C------CC---------------CCCeEEec
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y------PI---------------DGAVVLSK 116 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~------~~---------------~~~~~~~~ 116 (229)
.++.+|||+|||.|..+..||++ | ..|+|+|+|+. . .+ .++++. +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G----------~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~ 100 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G----------HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIF-C 100 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C----------CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEE-E
Confidence 56789999999999999999975 3 58999999972 1 11 146667 8
Q ss_pred CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
+|+.+... ...+.||.|+...... + ...+.....+..+.++|+|||++++..+
T Consensus 101 ~D~~~~~~-------~~~~~fD~i~D~~~~~--------~-l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 101 GDFFALTA-------ADLGPVDAVYDRAALI--------A-LPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred ccCCCCCc-------ccCCCcCEEEechhhc--------c-CCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 88877321 0124689998754321 0 1113345678889999999998766554
No 115
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.99 E-value=4.9e-10 Score=89.61 Aligned_cols=123 Identities=21% Similarity=0.235 Sum_probs=76.5
Q ss_pred hcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC------CC--CCeEEecCCCCChhH
Q psy1489 55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP------ID--GAVVLSKCDFTQPDI 124 (229)
Q Consensus 55 ~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~------~~--~~~~~~~~D~~~~~~ 124 (229)
....++ +.++||||||.|..+.+||++ | ..|+|+|.++. .. .. .++.. ..|+.+..
T Consensus 25 a~~~~~-~g~~LDlgcG~GRNalyLA~~-G----------~~VtAvD~s~~al~~l~~~a~~~~l~i~~~-~~Dl~~~~- 90 (192)
T PF03848_consen 25 AVPLLK-PGKALDLGCGEGRNALYLASQ-G----------FDVTAVDISPVALEKLQRLAEEEGLDIRTR-VADLNDFD- 90 (192)
T ss_dssp HCTTS--SSEEEEES-TTSHHHHHHHHT-T-----------EEEEEESSHHHHHHHHHHHHHTT-TEEEE-E-BGCCBS-
T ss_pred HHhhcC-CCcEEEcCCCCcHHHHHHHHC-C----------CeEEEEECCHHHHHHHHHHHhhcCceeEEE-Eecchhcc-
Confidence 344454 569999999999999999986 3 58999999972 11 11 25566 77877632
Q ss_pred HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC-CCC-----hHHHH---H
Q psy1489 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD-GRN-----RPQLE---E 195 (229)
Q Consensus 125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~-~~~-----~~~~~---~ 195 (229)
+ ++.||+|+|.... .+...+....++..+...++|||.+++..+. ..+ ..++. .
T Consensus 91 -------~-~~~yD~I~st~v~---------~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~ 153 (192)
T PF03848_consen 91 -------F-PEEYDFIVSTVVF---------MFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPG 153 (192)
T ss_dssp ---------TTTEEEEEEESSG---------GGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TT
T ss_pred -------c-cCCcCEEEEEEEe---------ccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHH
Confidence 3 3579999986432 1122233456788899999999998875542 111 11111 4
Q ss_pred HHHhhCCeeEEEc
Q psy1489 196 SITRFYSQVKILK 208 (229)
Q Consensus 196 ~l~~~F~~v~~~k 208 (229)
+|..+|..+++.+
T Consensus 154 EL~~~y~dW~il~ 166 (192)
T PF03848_consen 154 ELREYYADWEILK 166 (192)
T ss_dssp HHHHHTTTSEEEE
T ss_pred HHHHHhCCCeEEE
Confidence 5667777777654
No 116
>KOG4300|consensus
Probab=98.99 E-value=6.2e-10 Score=88.65 Aligned_cols=110 Identities=13% Similarity=0.079 Sum_probs=69.8
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC----------CCCCe-EEecCCCCChhHHHHHHH
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP----------IDGAV-VLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~----------~~~~~-~~~~~D~~~~~~~~~i~~ 130 (229)
..||++|||||..-.+.-. .|...|+++|.++ |.. .+.+. ++ .++..+. .+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~----------~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fv-va~ge~l------~~ 140 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW----------KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFV-VADGENL------PQ 140 (252)
T ss_pred cceEEecccCCCCcccccC----------CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEE-eechhcC------cc
Confidence 3579999999987555332 2667999999997 421 22444 55 5665552 21
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhC
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY 201 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F 201 (229)
+++.++|.|++.... -+. +.+.++|.+..++|||||++++-..-.....-+...+++++
T Consensus 141 -l~d~s~DtVV~TlvL-----CSv------e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ 199 (252)
T KOG4300|consen 141 -LADGSYDTVVCTLVL-----CSV------EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVA 199 (252)
T ss_pred -cccCCeeeEEEEEEE-----ecc------CCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHh
Confidence 468899999986532 111 23467899999999999998863322222333334444443
No 117
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.97 E-value=4.9e-09 Score=88.56 Aligned_cols=133 Identities=19% Similarity=0.247 Sum_probs=82.8
Q ss_pred hhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCC-Ce
Q psy1489 45 SAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDG-AV 112 (229)
Q Consensus 45 ~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~-~~ 112 (229)
+.+|...+.....-+ .|.+|||+|||.|.++..++.+ ++..|+|+|.++.. .... +.
T Consensus 100 Sd~KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~----------GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~ 168 (315)
T PF08003_consen 100 SDWKWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGR----------GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVF 168 (315)
T ss_pred ccchHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhc----------CCCEEEEECCChHHHHHHHHHHHHhCCCccEE
Confidence 334444443333212 5899999999999999998876 34689999998621 0111 11
Q ss_pred EEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC--C---
Q psy1489 113 VLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD--G--- 187 (229)
Q Consensus 113 ~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~--~--- 187 (229)
.+ ...+.+ +.. .+.||+|+|-+-. + |- ......|.+....|+|||.+|+.+.- +
T Consensus 169 ~l-plgvE~------Lp~---~~~FDtVF~MGVL---Y-Hr-------r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 169 EL-PLGVED------LPN---LGAFDTVFSMGVL---Y-HR-------RSPLDHLKQLKDSLRPGGELVLETLVIDGDEN 227 (315)
T ss_pred Ec-Ccchhh------ccc---cCCcCEEEEeeeh---h-cc-------CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc
Confidence 11 111111 211 4689999994432 1 11 22346777888999999999987531 1
Q ss_pred ------------------CChHHHHHHHHhh-CCeeEEEcC
Q psy1489 188 ------------------RNRPQLEESITRF-YSQVKILKP 209 (229)
Q Consensus 188 ------------------~~~~~~~~~l~~~-F~~v~~~kp 209 (229)
+....+...++++ |.+|+++--
T Consensus 228 ~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 228 TVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred eEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecC
Confidence 1256677777776 998888753
No 118
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.97 E-value=1.9e-09 Score=91.72 Aligned_cols=133 Identities=23% Similarity=0.340 Sum_probs=89.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C---------CCCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I---------YPIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~---------~~~~~~~~~~~~D~~~~~~~~~ 127 (229)
..+|..|||+|+|||+.+.++++.+. ..+.|+++|+++ + ....++... ..|.+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~--------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~-~~D~~~------ 147 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMG--------NKGEIVANDISPKRLKRLKENLKRLGVFNVIVI-NADARK------ 147 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTT--------TTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEE-ESHHHH------
T ss_pred ccccccccccccCCCCceeeeeeccc--------chhHHHHhccCHHHHHHHHHHHHhcCCceEEEE-eecccc------
Confidence 46789999999999999999999986 578999999996 1 123445555 444333
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCccc-----------HHHHHHHHHHHHHHHHHcc----cCCCEEEEee---cCCCC
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMD-----------HDLITQLAIAVIRFAVTYS----KPGADCLIKI---WDGRN 189 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d-----------~~~~~~~~~~~l~~~~~~L----kpgG~~v~~~---~~~~~ 189 (229)
+........||.|+.|++....|....+ ......++.++|+.+.+.+ +|||++|-.+ ...++
T Consensus 148 ~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eEN 227 (283)
T PF01189_consen 148 LDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEEN 227 (283)
T ss_dssp HHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGT
T ss_pred ccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHH
Confidence 2112334579999999987665542221 2233446678999999999 9999998654 33344
Q ss_pred hHHHHHHHHhhCCeeEEE
Q psy1489 190 RPQLEESITRFYSQVKIL 207 (229)
Q Consensus 190 ~~~~~~~l~~~F~~v~~~ 207 (229)
...+...+++ +..++..
T Consensus 228 E~vV~~fl~~-~~~~~l~ 244 (283)
T PF01189_consen 228 EEVVEKFLKR-HPDFELV 244 (283)
T ss_dssp HHHHHHHHHH-STSEEEE
T ss_pred HHHHHHHHHh-CCCcEEE
Confidence 4444455555 4444444
No 119
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.97 E-value=3.6e-09 Score=86.21 Aligned_cols=90 Identities=23% Similarity=0.263 Sum_probs=64.9
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
++++.+|||+|||+|.++..+++.. ++|+++|+++ +. .+.++.+. .+|..+.
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-----------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~-~~d~~~~----- 138 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-----------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVR-HGDGWKG----- 138 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-----------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEE-ECCcccC-----
Confidence 4678999999999999998877764 4899999986 21 23457777 8886542
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
....++||+|+++.+.. .....+.+.|+|||.+++.+.
T Consensus 139 ---~~~~~~fD~I~~~~~~~-----------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 ---WPAYAPFDRILVTAAAP-----------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ---CCcCCCcCEEEEccCch-----------------hhhHHHHHhcCCCcEEEEEEc
Confidence 11236899999976431 112346788999999998765
No 120
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.97 E-value=1.4e-09 Score=91.61 Aligned_cols=101 Identities=11% Similarity=0.145 Sum_probs=66.3
Q ss_pred CCCeeEeecCCCCc----hHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CC----------------------
Q psy1489 61 PGLKVLDCGAAPGS----WSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PI---------------------- 108 (229)
Q Consensus 61 ~g~~VLDlGcGpG~----~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~---------------------- 108 (229)
++.+|+|+|||+|. ++..+++..+. ......+|+|+|+++ |. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~----~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~ 174 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPK----AREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVE 174 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhh----cCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCC
Confidence 45799999999996 45556655420 001246899999997 21 11
Q ss_pred ----------CCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCC
Q psy1489 109 ----------DGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA 178 (229)
Q Consensus 109 ----------~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG 178 (229)
..+.+. +.|+.+.. .+.++||+|+|.... ++........++..+.+.|+|||
T Consensus 175 ~~~~v~~~ir~~V~F~-~~dl~~~~--------~~~~~fD~I~crnvl---------~yf~~~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 175 DKYRVKPELKERVRFA-KHNLLAES--------PPLGDFDLIFCRNVL---------IYFDEPTQRKLLNRFAEALKPGG 236 (264)
T ss_pred CeEEEChHHhCcCEEe-eccCCCCC--------CccCCCCEEEechhH---------HhCCHHHHHHHHHHHHHHhCCCe
Confidence 135666 77777632 236789999994422 11111345678999999999999
Q ss_pred EEEEe
Q psy1489 179 DCLIK 183 (229)
Q Consensus 179 ~~v~~ 183 (229)
.+++-
T Consensus 237 ~L~lg 241 (264)
T smart00138 237 YLFLG 241 (264)
T ss_pred EEEEE
Confidence 99874
No 121
>PLN03075 nicotianamine synthase; Provisional
Probab=98.96 E-value=2.8e-09 Score=90.51 Aligned_cols=128 Identities=17% Similarity=0.150 Sum_probs=83.0
Q ss_pred CCCeeEeecCCCCchHHH-HHHHHhccCCCCCCCCcEEEEEeCCC-CC-----------CC-CCCeEEecCCCCChhHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQV-AVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----------PI-DGAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~-la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----------~~-~~~~~~~~~D~~~~~~~~ 126 (229)
+..+|+|+|||||.++.. ++.... ++++++|+|+++ +. .+ +++.|. .+|+.+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~--------p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~-~~Da~~~~--- 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHL--------PTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFH-TADVMDVT--- 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcC--------CCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEE-ECchhhcc---
Confidence 568999999999987544 444444 778999999997 11 11 358888 88877621
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHH-----HHHhhC
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE-----SITRFY 201 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~-----~l~~~F 201 (229)
-..+.||+|++++.. .++. .....+++.+.+.|+|||.+++....+. ..+++ ..-+-|
T Consensus 191 -----~~l~~FDlVF~~ALi------~~dk----~~k~~vL~~l~~~LkPGG~Lvlr~~~G~--r~~LYp~v~~~~~~gf 253 (296)
T PLN03075 191 -----ESLKEYDVVFLAALV------GMDK----EEKVKVIEHLGKHMAPGALLMLRSAHGA--RAFLYPVVDPCDLRGF 253 (296)
T ss_pred -----cccCCcCEEEEeccc------cccc----ccHHHHHHHHHHhcCCCcEEEEecccch--HhhcCCCCChhhCCCe
Confidence 113679999997421 1111 1235788899999999999998763322 22221 111248
Q ss_pred CeeEEEcCCCCCCCCce
Q psy1489 202 SQVKILKPPSSRSHSAE 218 (229)
Q Consensus 202 ~~v~~~kp~~sr~~s~E 218 (229)
+...++.|.. ...|+=
T Consensus 254 ~~~~~~~P~~-~v~Nsv 269 (296)
T PLN03075 254 EVLSVFHPTD-EVINSV 269 (296)
T ss_pred EEEEEECCCC-CceeeE
Confidence 8888888843 344443
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.96 E-value=3.4e-09 Score=91.57 Aligned_cols=92 Identities=26% Similarity=0.328 Sum_probs=65.4
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~ 127 (229)
++++++|||+|||+|.++..+++..+ ..++|+++|+++ + ....++.++ .+|..+.
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~--------~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i-~gD~~~~----- 143 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVG--------EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFV-CGDGYYG----- 143 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEE-eCChhhc-----
Confidence 45789999999999999999998764 346899999997 2 123457777 7875541
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
+ .....||+|+++... . .....+.+.|+|||.+++.+
T Consensus 144 ~---~~~~~fD~Ii~~~g~-----~------------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 V---PEFAPYDVIFVTVGV-----D------------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred c---cccCCccEEEECCch-----H------------HhHHHHHHhcCCCCEEEEEe
Confidence 1 123579999996532 1 11223567899999998754
No 123
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.95 E-value=1.7e-09 Score=93.08 Aligned_cols=98 Identities=19% Similarity=0.136 Sum_probs=69.8
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PI-DGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~-~~~~~~~~~D~~~~~~~~~ 127 (229)
+.++.+|||+|||+|.++..++++. |..+++++|+.++. .+ .+++++ .+|+.+..
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~---------p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~-~~d~~~~~---- 212 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF---------PELDSTILNLPGAIDLVNENAAEKGVADRMRGI-AVDIYKES---- 212 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC---------CCCEEEEEecHHHHHHHHHHHHhCCccceEEEE-ecCccCCC----
Confidence 4677899999999999999999886 67899999974321 11 246788 88876521
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
++ .+|+|+..... +.++. +.+..+++.+.+.|+|||++++..+
T Consensus 213 ----~~--~~D~v~~~~~l-----h~~~~----~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 213 ----YP--EADAVLFCRIL-----YSANE----QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred ----CC--CCCEEEeEhhh-----hcCCh----HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 22 36988764321 11211 3456789999999999999987643
No 124
>PHA03412 putative methyltransferase; Provisional
Probab=98.94 E-value=3.4e-09 Score=87.05 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=67.5
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C-----CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I-----YPIDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~-----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
.+.+|||+|||+|.++..+++++.. .+...|+|+|+++ + ...+++.++ .+|+.+.. + +
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~------~~~~~V~aVEID~~Al~~Ar~n~~~~~~~-~~D~~~~~--------~-~ 112 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMY------AKPREIVCVELNHTYYKLGKRIVPEATWI-NADALTTE--------F-D 112 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhccc------CCCcEEEEEECCHHHHHHHHhhccCCEEE-Ecchhccc--------c-c
Confidence 3679999999999999998886421 0245899999997 2 134567888 88876521 2 4
Q ss_pred CCccEEEeCCCCCCCCCCcc-cHHHHHHHHHHHHHHHHHcccCCCE
Q psy1489 135 DKLDVVLSDMAPNATGMREM-DHDLITQLAIAVIRFAVTYSKPGAD 179 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~-d~~~~~~~~~~~l~~~~~~LkpgG~ 179 (229)
.+||+|++|++.......+. ...........++..+.+++++|+.
T Consensus 113 ~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 113 TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 58999999998643222111 0011123345677888886666654
No 125
>PLN02672 methionine S-methyltransferase
Probab=98.93 E-value=3.5e-09 Score=103.29 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=86.9
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CC----------------CCCeEE
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PI----------------DGAVVL 114 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~----------------~~~~~~ 114 (229)
+.+|||||||+|.++..+++.. +..+|+|+|+++. . .+ .+++++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~---------~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~ 189 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW---------LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFY 189 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEE
Confidence 4689999999999999999876 5679999999971 0 01 246778
Q ss_pred ecCCCCChhHHHHHHHHhCC--CCccEEEeCCCCCCCCC--------Cccc---------------H----HHHHHHHHH
Q psy1489 115 SKCDFTQPDIQDRLVTILKD--DKLDVVLSDMAPNATGM--------REMD---------------H----DLITQLAIA 165 (229)
Q Consensus 115 ~~~D~~~~~~~~~i~~~~~~--~~~D~V~sd~~~~~~g~--------~~~d---------------~----~~~~~~~~~ 165 (229)
++|+.+. +.+ .+||+|+||++--..+. ...+ . ..-+.....
T Consensus 190 -~sDl~~~---------~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~ 259 (1082)
T PLN02672 190 -ESDLLGY---------CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIAR 259 (1082)
T ss_pred -ECchhhh---------ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHH
Confidence 8887652 212 36999999986211110 0000 0 122345578
Q ss_pred HHHHHHHcccCCCEEEEeecCCCChHHHH-HHHHhh-CCeeEEEcCC
Q psy1489 166 VIRFAVTYSKPGADCLIKIWDGRNRPQLE-ESITRF-YSQVKILKPP 210 (229)
Q Consensus 166 ~l~~~~~~LkpgG~~v~~~~~~~~~~~~~-~~l~~~-F~~v~~~kp~ 210 (229)
++..+.++|+|||.+++++-.... +.+. +.+.+. |..+++++-.
T Consensus 260 i~~~a~~~L~pgG~l~lEiG~~q~-~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 260 AVEEGISVIKPMGIMIFNMGGRPG-QAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred HHHHHHHhccCCCEEEEEECccHH-HHHHHHHHHHCCCCeeEEeeeh
Confidence 899999999999999998854432 4455 355443 7777777654
No 126
>PRK06202 hypothetical protein; Provisional
Probab=98.91 E-value=6.2e-09 Score=85.98 Aligned_cols=103 Identities=16% Similarity=0.143 Sum_probs=64.9
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------PIDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
.++.+|||+|||+|.++..+++..... .+..+|+|+|+++ |. ...++.+. ..+.... .
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~-----g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~l------~-- 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRD-----GLRLEVTAIDPDPRAVAFARANPRRPGVTFR-QAVSDEL------V-- 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhC-----CCCcEEEEEcCCHHHHHHHHhccccCCCeEE-EEecccc------c--
Confidence 456899999999999999988754200 0345999999997 31 11345554 4443331 1
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~ 187 (229)
..+++||+|+++... +..+. .....+++++.++++ |.+++..+..
T Consensus 125 ~~~~~fD~V~~~~~l-----hh~~d----~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 125 AEGERFDVVTSNHFL-----HHLDD----AEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred ccCCCccEEEECCee-----ecCCh----HHHHHHHHHHHHhcC--eeEEEecccc
Confidence 246789999997653 11111 123468888999998 4555544443
No 127
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.90 E-value=7.7e-10 Score=89.97 Aligned_cols=94 Identities=28% Similarity=0.389 Sum_probs=65.9
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
+++|++|||+|||+|..+..++...+ +.++|++||+.+ +. .+.++.++ .+|.....
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg--------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~-~gdg~~g~---- 136 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVG--------PVGRVVSVERDPELAERARRNLARLGIDNVEVV-VGDGSEGW---- 136 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHS--------TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEE-ES-GGGTT----
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcC--------ccceEEEECccHHHHHHHHHHHHHhccCceeEE-Ecchhhcc----
Confidence 68999999999999999999999987 677999999986 11 24578888 88865421
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
-...+||.|++.++. +... ....+.|++||++|+-+-.
T Consensus 137 ----~~~apfD~I~v~~a~-----~~ip------------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 137 ----PEEAPFDRIIVTAAV-----PEIP------------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp ----GGG-SEEEEEESSBB-----SS--------------HHHHHTEEEEEEEEEEESS
T ss_pred ----ccCCCcCEEEEeecc-----chHH------------HHHHHhcCCCcEEEEEEcc
Confidence 224589999997753 1111 2266779999999986543
No 128
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.89 E-value=4e-09 Score=84.82 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=50.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---PIDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---~~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
++++.+|||+|||+|.++..+++.. ...++|+|+++ +. ...++.++ .+|+.+. +. .+++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~----------~~~~~giD~s~~~i~~a~~~~~~~~-~~d~~~~-----l~-~~~~ 73 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK----------QVRGYGIEIDQDGVLACVARGVNVI-QGDLDEG-----LE-AFPD 73 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc----------CCcEEEEeCCHHHHHHHHHcCCeEE-EEEhhhc-----cc-ccCC
Confidence 4578899999999999998887653 24789999997 21 12456777 7776541 10 1446
Q ss_pred CCccEEEeCCC
Q psy1489 135 DKLDVVLSDMA 145 (229)
Q Consensus 135 ~~~D~V~sd~~ 145 (229)
++||+|++..+
T Consensus 74 ~sfD~Vi~~~~ 84 (194)
T TIGR02081 74 KSFDYVILSQT 84 (194)
T ss_pred CCcCEEEEhhH
Confidence 78999999654
No 129
>KOG1122|consensus
Probab=98.88 E-value=2.7e-08 Score=86.91 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=90.2
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C---------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y---------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~---------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
.++|.||||+|++||+-+.++|..+. ..|.|+|.|.+.- . ...+..+. ..|.....
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMk--------n~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~-n~D~~ef~---- 305 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMK--------NTGVIFANDSNENRLKSLKANLHRLGVTNTIVS-NYDGREFP---- 305 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHc--------CCceEEecccchHHHHHHHHHHHHhCCCceEEE-ccCccccc----
Confidence 46899999999999999999999887 6789999998751 0 12344455 55544310
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCccc-----------HHHHHHHHHHHHHHHHHcccCCCEEEEee---cCCCChHHH
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMD-----------HDLITQLAIAVIRFAVTYSKPGADCLIKI---WDGRNRPQL 193 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d-----------~~~~~~~~~~~l~~~~~~LkpgG~~v~~~---~~~~~~~~~ 193 (229)
...++. +||-|+.|+++..+|+-..+ ......++.+.|..|.+++++||.+|-.+ ....+...+
T Consensus 306 -~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV 383 (460)
T KOG1122|consen 306 -EKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVV 383 (460)
T ss_pred -ccccCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHH
Confidence 012444 89999999998776664433 22334577789999999999999998544 333443334
Q ss_pred HHHHHhhCCeeEEE
Q psy1489 194 EESITRFYSQVKIL 207 (229)
Q Consensus 194 ~~~l~~~F~~v~~~ 207 (229)
-+.|.. |-.+++.
T Consensus 384 ~yaL~K-~p~~kL~ 396 (460)
T KOG1122|consen 384 DYALKK-RPEVKLV 396 (460)
T ss_pred HHHHHh-CCceEec
Confidence 455554 4445444
No 130
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=98.88 E-value=1.8e-08 Score=82.75 Aligned_cols=150 Identities=21% Similarity=0.259 Sum_probs=83.3
Q ss_pred cCCCCeeEeecCCC--Cch--HHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 59 LRPGLKVLDCGAAP--GSW--SQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 59 ~~~g~~VLDlGcGp--G~~--s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
++..++||.||+|+ |.- +..|.+.++ .++.++-.|+.+.....+..+ .+|... ...+
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP--------~~ailvDnDi~d~vSDa~~~~--~~Dc~t---------~~~~ 119 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLP--------EDAILVDNDIRDYVSDADQSI--VGDCRT---------YMPP 119 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS---------TT-EEEEEESS--B-SSSEEE--ES-GGG---------EEES
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCC--------CCcEEEecchhhhccccCCce--eccccc---------cCCC
Confidence 34579999999876 321 456667764 456888999987433333333 466544 2446
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCCC
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRS 214 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~ 214 (229)
.+||+|+|||--.....-+.+.........-+...+...|+-||.+.+|+-......++.+ +-++|+.+++|.. +-..
T Consensus 120 ~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lye-l~~~F~~wt~FcT-~VNt 197 (299)
T PF06460_consen 120 DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYE-LMGYFSWWTCFCT-AVNT 197 (299)
T ss_dssp S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHH-HHTTEEEEEEEEE-GGGT
T ss_pred CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHH-HHhhcccEEEEec-ccCc
Confidence 7899999999521111111111111122334566678889999999999977776455555 5567999999964 6678
Q ss_pred CCceEEEEeccCCCC
Q psy1489 215 HSAELFLLGRGFKGK 229 (229)
Q Consensus 215 ~s~E~Y~v~~~~~~~ 229 (229)
+|||.++||.++.|.
T Consensus 198 SSSEaFLigiNYLg~ 212 (299)
T PF06460_consen 198 SSSEAFLIGINYLGK 212 (299)
T ss_dssp TSS-EEEEEEEE-SS
T ss_pred cccceeEEeeeccCc
Confidence 999999999999874
No 131
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.88 E-value=9e-09 Score=84.38 Aligned_cols=95 Identities=15% Similarity=0.051 Sum_probs=64.9
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C------CC---------------CCCeEEec
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y------PI---------------DGAVVLSK 116 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~------~~---------------~~~~~~~~ 116 (229)
.++.+|||+|||.|..+..||++ | ..|+|||+++. . .+ ..+++. +
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~-G----------~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~-~ 103 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ-G----------HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIY-C 103 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC-C----------CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEE-E
Confidence 46789999999999999999975 3 59999999962 1 11 235666 7
Q ss_pred CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+|+.+... -....||+|+.-... +....+.....+..+.++|+|||++++
T Consensus 104 ~D~~~l~~-------~~~~~fd~v~D~~~~---------~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 104 GDFFALTA-------ADLADVDAVYDRAAL---------IALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CcccCCCc-------ccCCCeeEEEehHhH---------hhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 88776321 012478999864322 011123445778889999999997544
No 132
>KOG1271|consensus
Probab=98.87 E-value=7.1e-09 Score=81.14 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=81.1
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCC-CeEEecCCCCChhHHHHHHH
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDG-AVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~-~~~~~~~D~~~~~~~~~i~~ 130 (229)
.+|||||||.|.+...|++.- -.+.++|||.++- ...++ +++. +.||+++.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg---------f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~-q~DI~~~~------- 131 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG---------FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQ-QLDITDPD------- 131 (227)
T ss_pred cceeeccCCchHHHHHHHHhc---------CCCCccccccCHHHHHHHHHHHHhcCCCcceeEE-EeeccCCc-------
Confidence 499999999999988888763 3456999999971 11233 7888 99999863
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-CCeeEEE
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-YSQVKIL 207 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~~ 207 (229)
+..++||+|+--+..++-+.+....... +..-+....++|+|||.|+|. -+....+++.+.+... |..+..+
T Consensus 132 -~~~~qfdlvlDKGT~DAisLs~d~~~~r---~~~Y~d~v~~ll~~~gifvIt-SCN~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 132 -FLSGQFDLVLDKGTLDAISLSPDGPVGR---LVVYLDSVEKLLSPGGIFVIT-SCNFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred -ccccceeEEeecCceeeeecCCCCcccc---eeeehhhHhhccCCCcEEEEE-ecCccHHHHHHHHhcCCeEEEEee
Confidence 4467899988655443322221111000 112345577889999999984 3445568888888765 6555444
No 133
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.86 E-value=2.8e-08 Score=87.63 Aligned_cols=121 Identities=19% Similarity=0.133 Sum_probs=80.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCC--CCCeEEecCCCCChhHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPI--DGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~--~~~~~~~~~D~~~~~~~~~ 127 (229)
.|++||||.|-||+||.++|.. ++.+|++||+|.- +.+ ....++ ++|+.+ .
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g----------GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i-~~Dvf~-----~ 280 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG----------GASEVTSVDLSKRALEWARENAELNGLDGDRHRFI-VGDVFK-----W 280 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc----------CCCceEEEeccHHHHHHHHHHHHhcCCCccceeee-hhhHHH-----H
Confidence 3899999999999999998864 4569999999961 122 224677 777554 2
Q ss_pred HHHHh-CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-CChHHHHHHHHh
Q psy1489 128 LVTIL-KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-RNRPQLEESITR 199 (229)
Q Consensus 128 i~~~~-~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-~~~~~~~~~l~~ 199 (229)
+.... .+.+||+|+.|++.-..+-.. .+.........+..+.++|+|||++++..-.. .....+.+.+..
T Consensus 281 l~~~~~~g~~fDlIilDPPsF~r~k~~--~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~ 352 (393)
T COG1092 281 LRKAERRGEKFDLIILDPPSFARSKKQ--EFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIAR 352 (393)
T ss_pred HHHHHhcCCcccEEEECCcccccCccc--chhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHH
Confidence 33322 245899999998743222111 23444455678888999999999998866433 345555555543
No 134
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.85 E-value=7.1e-09 Score=83.92 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=74.2
Q ss_pred hhhhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCCCCCeEEecCCCCCh
Q psy1489 44 RSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPIDGAVVLSKCDFTQP 122 (229)
Q Consensus 44 r~~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~~~~~~~~~~D~~~~ 122 (229)
+...+|.++..+.+. .+=.++||||||||-.+..+..+. .+++|||+|. |..... ..++.+.
T Consensus 109 ~vP~~l~emI~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a-----------~~ltGvDiS~nMl~kA~-----eKg~YD~ 171 (287)
T COG4976 109 SVPELLAEMIGKADL-GPFRRMLDLGCGTGLTGEALRDMA-----------DRLTGVDISENMLAKAH-----EKGLYDT 171 (287)
T ss_pred ccHHHHHHHHHhccC-CccceeeecccCcCcccHhHHHHH-----------hhccCCchhHHHHHHHH-----hccchHH
Confidence 334445554444331 123689999999999999988876 4899999998 422211 1112221
Q ss_pred hHHHHHH---HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 123 DIQDRLV---TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 123 ~~~~~i~---~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
-.+.... +...+++||+|.+ .|....+..++.++-.+..+|+|||.|.+++-+
T Consensus 172 L~~Aea~~Fl~~~~~er~DLi~A-----------aDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 172 LYVAEAVLFLEDLTQERFDLIVA-----------ADVLPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred HHHHHHHHHhhhccCCcccchhh-----------hhHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 1122222 2234678999998 344555566778888999999999999988743
No 135
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.85 E-value=3.9e-08 Score=79.85 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=85.3
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-------CCC------CCCeEEecCCCCChhHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-------YPI------DGAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-------~~~------~~~~~~~~~D~~~~~~~~ 126 (229)
+.|.+|||.|.|=|..++..+++ ++-+|+.++.+|. +|. .+++++ .+|+.+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r----------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~ii-lGD~~e----- 196 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER----------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKII-LGDAYE----- 196 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc----------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEe-cccHHH-----
Confidence 45999999999999999998876 3358999988871 111 146778 888665
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC------CCC-hHHHHHHHHh
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD------GRN-RPQLEESITR 199 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~------~~~-~~~~~~~l~~ 199 (229)
+.+.+++++||+|+.|++-- ..... --.+...++.+|+|||||.+.-.+-. +.+ ...+.+.|++
T Consensus 197 -~V~~~~D~sfDaIiHDPPRf-------S~Age-LYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 197 -VVKDFDDESFDAIIHDPPRF-------SLAGE-LYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR 267 (287)
T ss_pred -HHhcCCccccceEeeCCCcc-------chhhh-HhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence 44558899999999998520 01110 11347789999999999999765532 222 3456677777
Q ss_pred h-CCeeEEE
Q psy1489 200 F-YSQVKIL 207 (229)
Q Consensus 200 ~-F~~v~~~ 207 (229)
. |..|...
T Consensus 268 vGF~~v~~~ 276 (287)
T COG2521 268 VGFEVVKKV 276 (287)
T ss_pred cCceeeeee
Confidence 6 7766554
No 136
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.83 E-value=1e-08 Score=85.30 Aligned_cols=119 Identities=21% Similarity=0.297 Sum_probs=81.3
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCC-CCCeEEecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPI-DGAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~-~~~~~~~~~D~~~~~~~~ 126 (229)
+.||.+||+-|.|+|.++.+|+..++ |.|+|+..|..+- ..+ .++.+. ..|+.+...
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~--------p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~-~~Dv~~~g~-- 106 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVG--------PTGHVYTYEFREDRAEKARKNFERHGLDDNVTVH-HRDVCEEGF-- 106 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHT--------TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEE-ES-GGCG----
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhC--------CCeEEEccccCHHHHHHHHHHHHHcCCCCCceeE-ecceecccc--
Confidence 57999999999999999999999998 8999999999851 123 357777 888865321
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcc-cCCCEEEEeecCCCChHHHHHHHHhh-CCee
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS-KPGADCLIKIWDGRNRPQLEESITRF-YSQV 204 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~L-kpgG~~v~~~~~~~~~~~~~~~l~~~-F~~v 204 (229)
.+.+ +..+|.|+.|++- + ..++..+.+.| ++||.+++-..+-.......+.|+.. |..+
T Consensus 107 --~~~~-~~~~DavfLDlp~---------P-------w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i 167 (247)
T PF08704_consen 107 --DEEL-ESDFDAVFLDLPD---------P-------WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDI 167 (247)
T ss_dssp --STT--TTSEEEEEEESSS---------G-------GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEE
T ss_pred --cccc-cCcccEEEEeCCC---------H-------HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeee
Confidence 0111 3679999999963 1 13566688899 89999988665555566677777664 6555
Q ss_pred EEE
Q psy1489 205 KIL 207 (229)
Q Consensus 205 ~~~ 207 (229)
+++
T Consensus 168 ~~~ 170 (247)
T PF08704_consen 168 ETV 170 (247)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 137
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.83 E-value=1.3e-08 Score=84.33 Aligned_cols=99 Identities=13% Similarity=0.116 Sum_probs=68.9
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~ 127 (229)
.+..+|||+|||+|.-+..++..++ ++++|+++|+++ +. .+ ..++++ .+|+.+. ...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~--------~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~-~gda~~~--L~~ 135 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALP--------EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFI-QSDALSA--LDQ 135 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-EccHHHH--HHH
Confidence 4578999999999998888887765 578999999997 11 12 246777 8886652 111
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+....+.++||+|+.|+.. ......+..+.++|+|||.+++.
T Consensus 136 l~~~~~~~~fD~VfiDa~k--------------~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDADK--------------PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHhCCCCCCCCEEEECCCH--------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 2111124689999998742 11224567788999999998863
No 138
>PLN02366 spermidine synthase
Probab=98.81 E-value=9.8e-08 Score=82.09 Aligned_cols=123 Identities=12% Similarity=0.045 Sum_probs=80.2
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C--------------CCCCCeEEecCCCCChhH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y--------------PIDGAVVLSKCDFTQPDI 124 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~--------------~~~~~~~~~~~D~~~~~~ 124 (229)
++..+||++|||.|+.+..+++.. +..+|+.||+++. . .-++++++ .+|....
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~---------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi-~~Da~~~-- 157 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS---------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLH-IGDGVEF-- 157 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC---------CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEE-EChHHHH--
Confidence 456899999999999999888652 3468999999872 1 12357777 7765431
Q ss_pred HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee---cC-CCChHHHHHHHHhh
Q psy1489 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI---WD-GRNRPQLEESITRF 200 (229)
Q Consensus 125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~---~~-~~~~~~~~~~l~~~ 200 (229)
+. ..+++.||+|++|.... .+. ..+. .....++.+.+.|+|||.+++.. |. ......+...++..
T Consensus 158 ---l~-~~~~~~yDvIi~D~~dp-~~~--~~~L----~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~ 226 (308)
T PLN02366 158 ---LK-NAPEGTYDAIIVDSSDP-VGP--AQEL----FEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRET 226 (308)
T ss_pred ---Hh-hccCCCCCEEEEcCCCC-CCc--hhhh----hHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHH
Confidence 11 13356899999997531 111 1111 12467788999999999998643 21 22345667778888
Q ss_pred C-CeeE
Q psy1489 201 Y-SQVK 205 (229)
Q Consensus 201 F-~~v~ 205 (229)
| ..+.
T Consensus 227 F~~~v~ 232 (308)
T PLN02366 227 FKGSVN 232 (308)
T ss_pred CCCcee
Confidence 8 4453
No 139
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.5e-08 Score=79.48 Aligned_cols=90 Identities=24% Similarity=0.395 Sum_probs=67.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~ 127 (229)
++++++||++|||+|..+..+++.. ++|+++|+.+ + ..+.++.+. ++|-..-
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~-----------~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~-~gDG~~G----- 132 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV-----------GRVVSIERIEELAEQARRNLETLGYENVTVR-HGDGSKG----- 132 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh-----------CeEEEEEEcHHHHHHHHHHHHHcCCCceEEE-ECCcccC-----
Confidence 6789999999999999999999886 4999999985 1 134578888 8887652
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
+-+..+||.|+..++.. ... +...+.|++||++++-+-
T Consensus 133 ---~~~~aPyD~I~Vtaaa~-----~vP------------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 133 ---WPEEAPYDRIIVTAAAP-----EVP------------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ---CCCCCCcCEEEEeeccC-----CCC------------HHHHHhcccCCEEEEEEc
Confidence 12347899999877531 111 125567999999998765
No 140
>KOG1975|consensus
Probab=98.79 E-value=1.1e-08 Score=86.64 Aligned_cols=151 Identities=19% Similarity=0.161 Sum_probs=95.1
Q ss_pred hccCcHHHHHHHhcCccchhhhhhHhhhhhc---------CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcE
Q psy1489 26 RQFADPYVQKAKKENYRCRSAFKLLEIDSKI---------KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGL 96 (229)
Q Consensus 26 ~~~~d~y~~~~~~~~~~~r~~~kl~~i~~~~---------~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~ 96 (229)
+..+++|.+. ...++..|..-+++.+-.-- .+.+++..++|||||-|+-..---+. .-+.
T Consensus 74 ~~Va~HYN~~-~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA----------gI~~ 142 (389)
T KOG1975|consen 74 SEVAEHYNER-TEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA----------GIGE 142 (389)
T ss_pred HHHHHHHHHH-HHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhh----------cccc
Confidence 4466777654 33345555433332221111 12467899999999999875443321 3468
Q ss_pred EEEEeCCCCC------------CC-----CCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHH
Q psy1489 97 VLSVDKLPIY------------PI-----DGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLI 159 (229)
Q Consensus 97 v~gvD~~~~~------------~~-----~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~ 159 (229)
++|+||.... .. -.+.++ .+|.+.......+. .++.+||+|-|-.+... .+..
T Consensus 143 ~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~-~~Dc~~~~l~d~~e--~~dp~fDivScQF~~HY-------aFet 212 (389)
T KOG1975|consen 143 YIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFI-AADCFKERLMDLLE--FKDPRFDIVSCQFAFHY-------AFET 212 (389)
T ss_pred eEeeehhhccHHHHHHHHHHHHhhhhcccceeEEE-EeccchhHHHHhcc--CCCCCcceeeeeeeEee-------eecc
Confidence 9999998621 11 136788 88887755433322 24455999998665421 2344
Q ss_pred HHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489 160 TQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200 (229)
Q Consensus 160 ~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~ 200 (229)
.+....+|..+.+.|+|||.||..+ ++...+++.|+..
T Consensus 213 ee~ar~~l~Nva~~LkpGG~FIgTi---Pdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 213 EESARIALRNVAKCLKPGGVFIGTI---PDSDVIIKRLRAG 250 (389)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEec---CcHHHHHHHHHhc
Confidence 4567788999999999999998744 5667788888764
No 141
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.75 E-value=1.9e-07 Score=79.07 Aligned_cols=141 Identities=11% Similarity=0.042 Sum_probs=85.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------C------CCCCeEEecCCCCChhHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------P------IDGAVVLSKCDFTQPDIQ 125 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~------~~~~~~~~~~D~~~~~~~ 125 (229)
...+||+||||.|+.+..+++.. +..+++++|+++ +. . .++++++ .+|..+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~---------~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~-~~D~~~---- 137 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK---------SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQ-IDDGFK---- 137 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC---------CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEE-ECchHH----
Confidence 45699999999999988887653 346899999996 21 0 1234555 444322
Q ss_pred HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC----ChHHHHHHHHhhC
Q psy1489 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR----NRPQLEESITRFY 201 (229)
Q Consensus 126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~----~~~~~~~~l~~~F 201 (229)
.+.. .+++||+|++|..... +. .... .....++.+.+.|+|||.+++..-... ....+...++..|
T Consensus 138 -~l~~--~~~~yDvIi~D~~~~~-~~--~~~l----~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F 207 (270)
T TIGR00417 138 -FLAD--TENTFDVIIVDSTDPV-GP--AETL----FTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAF 207 (270)
T ss_pred -HHHh--CCCCccEEEEeCCCCC-Cc--ccch----hHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHC
Confidence 1221 1468999999875211 11 1110 124677889999999999998532211 1344455677789
Q ss_pred CeeEEEcCC-CCCCCCceEEEEecc
Q psy1489 202 SQVKILKPP-SSRSHSAELFLLGRG 225 (229)
Q Consensus 202 ~~v~~~kp~-~sr~~s~E~Y~v~~~ 225 (229)
..+..+... .+-....-.|++|.+
T Consensus 208 ~~v~~~~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 208 PITEYYTANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred CCeEEEEEEcCccccchhEEEEEEC
Confidence 888766532 222233346777754
No 142
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.74 E-value=1e-08 Score=82.66 Aligned_cols=119 Identities=12% Similarity=0.125 Sum_probs=79.7
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C---------CCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I---------YPIDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~---------~~~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
..+||||||.|.+...+|+.. |+..++|+|+.. + ..+.|+.++ ++|.... +...
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~---------Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~-~~da~~~-----l~~~ 83 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN---------PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFL-RGDAREL-----LRRL 83 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS---------TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEE-ES-CTTH-----HHHH
T ss_pred CeEEEecCCCCHHHHHHHHHC---------CCCCEEEEecchHHHHHHHHHHHhhcccceEEE-EccHHHH-----Hhhc
Confidence 489999999999999999986 788999999985 1 256899999 9998873 4455
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHh
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR 199 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~ 199 (229)
++++++|-|....+--... ..|....-.....+....+.|+|||.+.+.+....-....++.+..
T Consensus 84 ~~~~~v~~i~i~FPDPWpK---~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 84 FPPGSVDRIYINFPDPWPK---KRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp STTTSEEEEEEES-----S---GGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred ccCCchheEEEeCCCCCcc---cchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 7778999999876521111 0111111122467888999999999998877554334445555555
No 143
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.72 E-value=9.6e-08 Score=66.90 Aligned_cols=92 Identities=26% Similarity=0.303 Sum_probs=65.6
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C------CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y------PIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~------~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+|+|+|||+|.++..+++ . +..+++++|+++. . ....+.+. ..|+.+... .
T Consensus 1 ~ildig~G~G~~~~~~~~-~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~ 62 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G---------PGARVTGVDISPVALELARKAAAALLADNVEVL-KGDAEELPP-------E 62 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C---------CCCEEEEEeCCHHHHHHHHHHHhcccccceEEE-EcChhhhcc-------c
Confidence 589999999999988887 2 4579999999861 0 12345666 777666321 2
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
....+|+|+++.+.... .......+..+.+.|+|||.+++.
T Consensus 63 ~~~~~d~i~~~~~~~~~----------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 63 ADESFDVIISDPPLHHL----------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cCCceEEEEEccceeeh----------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 35679999998754211 234457788899999999999874
No 144
>KOG2904|consensus
Probab=98.72 E-value=1e-07 Score=79.08 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=80.9
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCC-CeEEecCCCCChhHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDG-AVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~-~~~~~~~D~~~~~~~~~i~ 129 (229)
+..+||+|||+|+++..++.-+ +++.|+|+|.|+.+ .+.+ +.++ ..+.+. +... .
T Consensus 149 ~~~ildlgtGSGaIslsll~~L---------~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~-~~~me~-d~~~--~ 215 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGL---------PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI-HNIMES-DASD--E 215 (328)
T ss_pred cceEEEecCCccHHHHHHHhcC---------CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE-eccccc-cccc--c
Confidence 4579999999999999999877 67899999999721 1222 3333 222211 1100 0
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHH-------------------HHHHHHHHHHHHHHHcccCCCEEEEeecCCCCh
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHD-------------------LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR 190 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~-------------------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~ 190 (229)
..+.+++.|+++||++- +...|.. .-+......+..+.|+|+|||.+.+..-..+.-
T Consensus 216 ~~l~~~~~dllvsNPPY----I~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 216 HPLLEGKIDLLVSNPPY----IRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred cccccCceeEEecCCCc----ccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence 11456899999998762 2222211 002233356778999999999999876533322
Q ss_pred HHHH-HH----HHhhCCeeEEEcCCCCCC
Q psy1489 191 PQLE-ES----ITRFYSQVKILKPPSSRS 214 (229)
Q Consensus 191 ~~~~-~~----l~~~F~~v~~~kp~~sr~ 214 (229)
..+. .. ...++..+.++..-+.|+
T Consensus 292 ~~lv~~~m~s~~~d~~~~~~v~~Df~~~~ 320 (328)
T KOG2904|consen 292 SYLVRIWMISLKDDSNGKAAVVSDFAGRP 320 (328)
T ss_pred cHHHHHHHHhchhhccchhheeecccCCc
Confidence 2222 22 233456666666555443
No 145
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.71 E-value=1e-07 Score=78.00 Aligned_cols=95 Identities=22% Similarity=0.157 Sum_probs=63.8
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
.+.+|||+|||+|.++..+++.. .+++++|+++ +. ...++.+. ..|+.+. .
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~-----------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~-~~d~~~~------~ 106 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG-----------ANVTGIDASEENIEVAKLHAKKDPLLKIEYR-CTSVEDL------A 106 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC-----------CeEEEEeCCHHHHHHHHHHHHHcCCCceEEE-eCCHHHh------h
Confidence 47899999999999998887642 4799999986 21 11135555 5554331 1
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
. ...++||+|++.... ........++..+.++|+|||.+++...
T Consensus 107 ~-~~~~~~D~i~~~~~l-----------~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 107 E-KGAKSFDVVTCMEVL-----------EHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred c-CCCCCccEEEehhHH-----------HhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 0 113689999995432 1122234678889999999999887654
No 146
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.71 E-value=4.9e-08 Score=79.90 Aligned_cols=90 Identities=19% Similarity=0.132 Sum_probs=60.5
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~ 127 (229)
.++.+|||+|||+|.++..++... .+|+|+|+++ |. .. .++.+. .+|+.+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~-----------~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~-~~d~~~------ 115 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRG-----------AIVKAVDISEQMVQMARNRAQGRDVAGNVEFE-VNDLLS------ 115 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCC-----------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE-ECChhh------
Confidence 457899999999999999988642 5899999997 31 11 256777 777665
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v 181 (229)
++ ++||+|++.... .+. .......++..+.+++++++.+.
T Consensus 116 ----~~-~~fD~ii~~~~l--------~~~-~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 116 ----LC-GEFDIVVCMDVL--------IHY-PASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred ----CC-CCcCEEEEhhHH--------HhC-CHHHHHHHHHHHHHHhCCCEEEE
Confidence 22 689999984321 010 01224467777888887665444
No 147
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.70 E-value=8.7e-08 Score=75.36 Aligned_cols=68 Identities=24% Similarity=0.326 Sum_probs=52.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
+.++.+|||+|||+|.++..++++. ++|+|+|+++ +. ...+++++ .+|+.+..
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~-----------~~v~~vE~~~~~~~~~~~~~~~~~~v~ii-~~D~~~~~------ 72 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERA-----------ARVTAIEIDPRLAPRLREKFAAADNLTVI-HGDALKFD------ 72 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcC-----------CeEEEEECCHHHHHHHHHHhccCCCEEEE-ECchhcCC------
Confidence 3567899999999999999998862 5899999997 21 12467888 88887632
Q ss_pred HHhCCCCccEEEeCCCC
Q psy1489 130 TILKDDKLDVVLSDMAP 146 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~ 146 (229)
+++..||.|++|.+.
T Consensus 73 --~~~~~~d~vi~n~Py 87 (169)
T smart00650 73 --LPKLQPYKVVGNLPY 87 (169)
T ss_pred --ccccCCCEEEECCCc
Confidence 234469999998764
No 148
>PRK03612 spermidine synthase; Provisional
Probab=98.69 E-value=8.9e-08 Score=88.12 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=75.3
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----C-------------CCCCeEEecCCCCC
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----P-------------IDGAVVLSKCDFTQ 121 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----~-------------~~~~~~~~~~D~~~ 121 (229)
++..+|||+|||+|..+..++++ + +..+|++||+++ +. . .++++++ .+|..+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~--------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi-~~Da~~ 365 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-P--------DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVV-NDDAFN 365 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-C--------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEE-EChHHH
Confidence 45689999999999999888864 2 236999999986 21 1 1345666 666543
Q ss_pred hhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC----CCChHHHHHHH
Q psy1489 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD----GRNRPQLEESI 197 (229)
Q Consensus 122 ~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~----~~~~~~~~~~l 197 (229)
.+.. .+++||+|++|.+. ..+ ....+ -...+.++.+.+.|+|||.+++..-. .....++.+.+
T Consensus 366 -----~l~~--~~~~fDvIi~D~~~-~~~-~~~~~----L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l 432 (521)
T PRK03612 366 -----WLRK--LAEKFDVIIVDLPD-PSN-PALGK----LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATL 432 (521)
T ss_pred -----HHHh--CCCCCCEEEEeCCC-CCC-cchhc----cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHH
Confidence 1221 24689999999642 111 00001 01235678899999999999985422 22244566667
Q ss_pred Hhh-C
Q psy1489 198 TRF-Y 201 (229)
Q Consensus 198 ~~~-F 201 (229)
++. |
T Consensus 433 ~~~gf 437 (521)
T PRK03612 433 EAAGL 437 (521)
T ss_pred HHcCC
Confidence 666 6
No 149
>PRK01581 speE spermidine synthase; Validated
Probab=98.66 E-value=3.2e-07 Score=79.93 Aligned_cols=125 Identities=15% Similarity=0.065 Sum_probs=77.3
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----C-------------CCCCeEEecCCCCCh
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----P-------------IDGAVVLSKCDFTQP 122 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----~-------------~~~~~~~~~~D~~~~ 122 (229)
...+||++|||.|+.+..+++.. +..+|++||+++ |. . .++++++ .+|..+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~---------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vv-i~Da~~- 218 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE---------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVH-VCDAKE- 218 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC---------CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEE-ECcHHH-
Confidence 45799999999999887777652 456999999997 21 1 1345555 555443
Q ss_pred hHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC----hHHHHHHHH
Q psy1489 123 DIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN----RPQLEESIT 198 (229)
Q Consensus 123 ~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~----~~~~~~~l~ 198 (229)
.+.. .++.||+|++|.+. ..+.. ... -.....+..+.+.|+|||.|++-.-.... ...+...++
T Consensus 219 ----fL~~--~~~~YDVIIvDl~D-P~~~~-~~~----LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~ 286 (374)
T PRK01581 219 ----FLSS--PSSLYDVIIIDFPD-PATEL-LST----LYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIE 286 (374)
T ss_pred ----HHHh--cCCCccEEEEcCCC-ccccc-hhh----hhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHH
Confidence 1221 24679999999642 11110 001 11246788899999999999875322211 133456677
Q ss_pred hhCCeeEEEc
Q psy1489 199 RFYSQVKILK 208 (229)
Q Consensus 199 ~~F~~v~~~k 208 (229)
..|..+..+.
T Consensus 287 ~af~~v~~y~ 296 (374)
T PRK01581 287 HAGLTVKSYH 296 (374)
T ss_pred HhCCceEEEE
Confidence 7676555443
No 150
>KOG1541|consensus
Probab=98.66 E-value=2.3e-08 Score=80.56 Aligned_cols=139 Identities=16% Similarity=0.219 Sum_probs=80.3
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC------CCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP------IDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~------~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
+.-|||+|||+|--+..+.+. ....+|+|+|+ |.. ++ -.++ .+|.-.. + .+.+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~-----------Gh~wiGvDiSpsML~~a~~~e~e-gdli-l~DMG~G-----l--pfrp 110 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS-----------GHQWIGVDISPSMLEQAVERELE-GDLI-LCDMGEG-----L--PFRP 110 (270)
T ss_pred CcEEEEeccCCCcchheeccC-----------CceEEeecCCHHHHHHHHHhhhh-cCee-eeecCCC-----C--CCCC
Confidence 568999999999888876653 36899999998 532 22 2344 5555432 1 2668
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHH----HhhCC-eeEEEcC
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI----TRFYS-QVKILKP 209 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l----~~~F~-~v~~~kp 209 (229)
+.||-+||-.+..+.-.-+.........+...+...+..|++|++.++..+...+ .++-..+ ..=|. .+.+--|
T Consensus 111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~-~q~d~i~~~a~~aGF~GGlvVd~P 189 (270)
T KOG1541|consen 111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE-AQIDMIMQQAMKAGFGGGLVVDWP 189 (270)
T ss_pred CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccch-HHHHHHHHHHHhhccCCceeeecc
Confidence 8999999865532211111111111123346677788899999999996655432 3322222 22253 3444445
Q ss_pred CCCCCCCceEEEEe
Q psy1489 210 PSSRSHSAELFLLG 223 (229)
Q Consensus 210 ~~sr~~s~E~Y~v~ 223 (229)
.+.|+ ..-|+|-
T Consensus 190 es~k~--kK~yLVL 201 (270)
T KOG1541|consen 190 ESTKN--KKYYLVL 201 (270)
T ss_pred ccccc--ceeEEEE
Confidence 55443 3455553
No 151
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.66 E-value=2.1e-07 Score=80.21 Aligned_cols=136 Identities=21% Similarity=0.189 Sum_probs=87.8
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecC-CCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKC-DFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~-D~~~~~~~~ 126 (229)
.++|+.|||==||||++...+. .+| .+++|+|++. |. .++...+. .. |+++.+
T Consensus 195 v~~G~~vlDPFcGTGgiLiEag-l~G----------~~viG~Did~~mv~gak~Nl~~y~i~~~~~~-~~~Da~~lp--- 259 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAG-LMG----------ARVIGSDIDERMVRGAKINLEYYGIEDYPVL-KVLDATNLP--- 259 (347)
T ss_pred cccCCEeecCcCCccHHHHhhh-hcC----------ceEeecchHHHHHhhhhhhhhhhCcCceeEE-EecccccCC---
Confidence 6789999999999999988855 444 6999999986 31 13344455 44 777743
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCc-ccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeE
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMRE-MDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVK 205 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~-~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~ 205 (229)
+++..+|.|++|++- |... .......++...+++.+.++|++||.+++-.. ....-+.....|.-+.
T Consensus 260 -----l~~~~vdaIatDPPY---Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p----~~~~~~~~~~~f~v~~ 327 (347)
T COG1041 260 -----LRDNSVDAIATDPPY---GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP----RDPRHELEELGFKVLG 327 (347)
T ss_pred -----CCCCccceEEecCCC---CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC----CcchhhHhhcCceEEE
Confidence 666679999999975 2222 11112346778999999999999999987554 1222233334465555
Q ss_pred EEcCCCCCCCCceEEE
Q psy1489 206 ILKPPSSRSHSAELFL 221 (229)
Q Consensus 206 ~~kp~~sr~~s~E~Y~ 221 (229)
.+.--.-++=...+|+
T Consensus 328 ~~~~~~H~sLtR~i~v 343 (347)
T COG1041 328 RFTMRVHGSLTRVIYV 343 (347)
T ss_pred EEEEeecCceEEEEEE
Confidence 5433222223444553
No 152
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.65 E-value=1.4e-07 Score=77.78 Aligned_cols=97 Identities=19% Similarity=0.152 Sum_probs=64.7
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC---------CCCCeEEecCCCCChhHHHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP---------IDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~---------~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
.++.+|||+|||+|.++..+++. + .+++++|+++ +.. -..+.+. ..|+.+ +.
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~-~----------~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~------~~ 108 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL-G----------ADVTGIDASEENIEVARLHALESGLKIDYR-QTTAEE------LA 108 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-C----------CeEEEEcCCHHHHHHHHHHHHHcCCceEEE-ecCHHH------hh
Confidence 46789999999999999888765 2 5899999986 210 0124455 555433 11
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
. ..++.||+|++...... ......++..+.++|+|||.+++..+.
T Consensus 109 ~-~~~~~fD~Ii~~~~l~~-----------~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 109 A-EHPGQFDVVTCMEMLEH-----------VPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred h-hcCCCccEEEEhhHhhc-----------cCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 1 23578999998543211 111245788899999999999986543
No 153
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.64 E-value=1.1e-07 Score=76.74 Aligned_cols=100 Identities=15% Similarity=0.073 Sum_probs=63.2
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i 128 (229)
.++.+|||||||+|.++..++.+. ..+|+++|+++- ..+.++.++ .+|+.+. +
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~----------a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~-~~D~~~~-----l 115 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY----------AAGATLLEMDRAVAQQLIKNLATLKAGNARVV-NTNALSF-----L 115 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC----------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEE-EchHHHH-----H
Confidence 357899999999999998655542 369999999861 123456777 7775431 2
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~ 187 (229)
.. ....||+|++|++.. .| . .......+.. ..+|+|+|.+++.....
T Consensus 116 ~~--~~~~fDlV~~DPPy~-~g---~-----~~~~l~~l~~-~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 116 AQ--PGTPHNVVFVDPPFR-KG---L-----LEETINLLED-NGWLADEALIYVESEVE 162 (199)
T ss_pred hh--cCCCceEEEECCCCC-CC---h-----HHHHHHHHHH-CCCcCCCcEEEEEecCC
Confidence 11 235699999998731 11 1 1111222222 24589999998876543
No 154
>PLN02476 O-methyltransferase
Probab=98.61 E-value=2.6e-07 Score=78.12 Aligned_cols=99 Identities=8% Similarity=0.102 Sum_probs=69.4
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCC-CCCeEEecCCCCChhHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPI-DGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~-~~~~~~~~~D~~~~~~~~~ 127 (229)
.+..+|||+|+++|..+..++..++ +.++|+++|.++. ..+ ..++++ .+|..+. ...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~--------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li-~GdA~e~--L~~ 185 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLP--------ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVK-HGLAAES--LKS 185 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-EcCHHHH--HHH
Confidence 3568999999999999999998765 5689999999971 112 256777 7775541 111
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+......+.||+|+.|+.. ......+..+.++|+|||.+++.
T Consensus 186 l~~~~~~~~FD~VFIDa~K--------------~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDADK--------------RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHhcccCCCCCEEEECCCH--------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence 1111123589999998853 11235667788999999999864
No 155
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.60 E-value=1.2e-07 Score=80.39 Aligned_cols=127 Identities=21% Similarity=0.179 Sum_probs=76.3
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CC--CCCCeEEecCCCCChhHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YP--IDGAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~--~~~~~~~~~~D~~~~~~~~ 126 (229)
..|.+|||+-|-||+|+.+++.- ++.+|+.||.|.- +. ...++++ ++|+.+. ..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g----------GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~-~~Dvf~~--l~ 188 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG----------GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFI-QGDVFKF--LK 188 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT----------TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEE-ES-HHHH--HH
T ss_pred cCCCceEEecCCCCHHHHHHHHC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEE-ecCHHHH--HH
Confidence 35899999999999999997642 4568999999951 12 2356778 8876552 12
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC-CChHHHHHHHHhh---CC
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG-RNRPQLEESITRF---YS 202 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~-~~~~~~~~~l~~~---F~ 202 (229)
.+. ..++||+|++|++.-..+.... ......++..+.++|+|||.+++..-+. -..+.+++.+... +.
T Consensus 189 ~~~---~~~~fD~IIlDPPsF~k~~~~~-----~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~ 260 (286)
T PF10672_consen 189 RLK---KGGRFDLIILDPPSFAKSKFDL-----ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVE 260 (286)
T ss_dssp HHH---HTT-EEEEEE--SSEESSTCEH-----HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCE
T ss_pred HHh---cCCCCCEEEECCCCCCCCHHHH-----HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccce
Confidence 222 2568999999998544343222 1234467788999999999988655433 2344555555443 44
Q ss_pred eeEEE
Q psy1489 203 QVKIL 207 (229)
Q Consensus 203 ~v~~~ 207 (229)
-++..
T Consensus 261 ~~~~~ 265 (286)
T PF10672_consen 261 FIERL 265 (286)
T ss_dssp EEEEE
T ss_pred Eeeee
Confidence 44444
No 156
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.59 E-value=7.7e-08 Score=77.94 Aligned_cols=99 Identities=30% Similarity=0.439 Sum_probs=73.1
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC-------CCCCCeEEecCCCCChhHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY-------PIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~-------~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
+++|.+||-||+++|....+++..++ +.|.|+||+.++ +. ..+|+..+ .+|.+.+.....+
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg--------~~G~VYaVEfs~r~~rdL~~la~~R~NIiPI-l~DAr~P~~Y~~l- 140 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVG--------PDGVVYAVEFSPRSMRDLLNLAKKRPNIIPI-LEDARHPEKYRML- 140 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHT--------TTSEEEEEESSHHHHHHHHHHHHHSTTEEEE-ES-TTSGGGGTTT-
T ss_pred CCCCCEEEEecccCCCccchhhhccC--------CCCcEEEEEecchhHHHHHHHhccCCceeee-eccCCChHHhhcc-
Confidence 57899999999999999999999997 789999999997 22 34788878 8999987644322
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
-+.+|+|++|.+- .++ .+.++..+..+||+||.+++.+
T Consensus 141 ----v~~VDvI~~DVaQ-------p~Q------a~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 141 ----VEMVDVIFQDVAQ-------PDQ------ARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp ----S--EEEEEEE-SS-------TTH------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----cccccEEEecCCC-------hHH------HHHHHHHHHhhccCCcEEEEEE
Confidence 2389999998752 122 3456677889999999998765
No 157
>KOG1499|consensus
Probab=98.59 E-value=1.1e-07 Score=81.56 Aligned_cols=93 Identities=24% Similarity=0.287 Sum_probs=66.3
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------CCCC-CeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------PIDG-AVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~~~~-~~~~~~~D~~~~~~~~~i~ 129 (229)
++..|||+|||+|.+++..|+. ++.+|+|||-+.+. ...+ ++++ ++.+.+..
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA----------GA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi-~gkvEdi~------ 122 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA----------GARKVYAVEASSIADFARKIVKDNGLEDVITVI-KGKVEDIE------ 122 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh----------CcceEEEEechHHHHHHHHHHHhcCccceEEEe-ecceEEEe------
Confidence 5899999999999999998875 45799999999742 1233 6677 88777742
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHH-HHHHHHHHHHHcccCCCEEE
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQ-LAIAVIRFAVTYSKPGADCL 181 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~-~~~~~l~~~~~~LkpgG~~v 181 (229)
+|.+++|+|+|.- .| .....+ .+..+|-.=-++|+|||.++
T Consensus 123 --LP~eKVDiIvSEW----MG-----y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 123 --LPVEKVDIIVSEW----MG-----YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred --cCccceeEEeehh----hh-----HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 5567999999932 12 333322 34455655667999999864
No 158
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.58 E-value=3e-07 Score=73.91 Aligned_cols=104 Identities=23% Similarity=0.222 Sum_probs=62.5
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccE
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV 139 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~ 139 (229)
+++..|.|+|||-+.++..+.. ..+|...|+-+. -+ .++ .+|+.+.+ ++++.+|+
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~------------~~~V~SfDLva~--n~--~Vt-acdia~vP--------L~~~svDv 125 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN------------KHKVHSFDLVAP--NP--RVT-ACDIANVP--------LEDESVDV 125 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S---------------EEEEESS-S--ST--TEE-ES-TTS-S----------TT-EEE
T ss_pred CCCEEEEECCCchHHHHHhccc------------CceEEEeeccCC--CC--CEE-EecCccCc--------CCCCceeE
Confidence 4567999999999988754322 237999999763 22 355 78998743 66889999
Q ss_pred EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC--CCChHHHHHHHHhh
Q psy1489 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD--GRNRPQLEESITRF 200 (229)
Q Consensus 140 V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~--~~~~~~~~~~l~~~ 200 (229)
++.-.+. .|. .....+.+|.|+|||||.+.+..-. ..+...+.+.+..+
T Consensus 126 ~VfcLSL--MGT----------n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~ 176 (219)
T PF05148_consen 126 AVFCLSL--MGT----------NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKL 176 (219)
T ss_dssp EEEES-----SS-----------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCT
T ss_pred EEEEhhh--hCC----------CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHC
Confidence 9985543 221 1246789999999999999875432 24678888888776
No 159
>KOG3010|consensus
Probab=98.57 E-value=1.2e-07 Score=77.45 Aligned_cols=95 Identities=11% Similarity=0.117 Sum_probs=57.9
Q ss_pred CCC-eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC----CCCCeEE-ecCCCCChhHHHHHHHH-h
Q psy1489 61 PGL-KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP----IDGAVVL-SKCDFTQPDIQDRLVTI-L 132 (229)
Q Consensus 61 ~g~-~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~----~~~~~~~-~~~D~~~~~~~~~i~~~-~ 132 (229)
++. .++|+|||+|.-++.+++.. .+|+|+|+++ |.. -+++... ...-+.+.+ +..+ -
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~-----------k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~----~v~L~g 96 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHY-----------KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDE----MVDLLG 96 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhh-----------hhheeecCCHHHHHHhhcCCCcccccCCccccccc----cccccC
Confidence 444 78999999998888888876 3899999997 321 1111111 000011111 1111 1
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCC-EEEE
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA-DCLI 182 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG-~~v~ 182 (229)
.++++|+|++.- .+|..| .+..+.++.++||+.| .+++
T Consensus 97 ~e~SVDlI~~Aq-----a~HWFd-------le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 97 GEESVDLITAAQ-----AVHWFD-------LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred CCcceeeehhhh-----hHHhhc-------hHHHHHHHHHHcCCCCCEEEE
Confidence 267999999943 233333 4578889999998877 5443
No 160
>KOG2361|consensus
Probab=98.54 E-value=9.3e-08 Score=78.02 Aligned_cols=110 Identities=20% Similarity=0.215 Sum_probs=74.5
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--------CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--------PIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--------~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
++|++|||-|.....+++... +++-.|+++|.+|- . ....+... ..|++.+. +.....
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~-------n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~af-v~Dlt~~~----~~~~~~ 141 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSP-------NNRLKVYACDFSPRAIELVKKSSGYDESRVEAF-VWDLTSPS----LKEPPE 141 (264)
T ss_pred hheeeccCCCcccchhhhcCC-------CCCeEEEEcCCChHHHHHHHhccccchhhhccc-ceeccchh----ccCCCC
Confidence 799999999999989887652 13368999999981 1 01233444 56777654 334456
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHH
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE 194 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~ 194 (229)
.+.+|+|++-....+ + ..+....++..+.++|||||.+++..|...+...+.
T Consensus 142 ~~svD~it~IFvLSA--i-------~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR 193 (264)
T KOG2361|consen 142 EGSVDIITLIFVLSA--I-------HPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR 193 (264)
T ss_pred cCccceEEEEEEEec--c-------ChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh
Confidence 788998887543211 1 112335788999999999999999877655544443
No 161
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.54 E-value=5.3e-07 Score=81.47 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=63.8
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
..++.+|||+|||+|.++..+++.. .+|+|+|+++ |. .+.+++++ .+|+.+.
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-----------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~-~~d~~~~----- 357 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-----------AEVVGVEGVEAMVERARENARRNGLDNVTFY-HANLEED----- 357 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEE-EeChHHh-----
Confidence 3567899999999999999998763 5899999997 21 23467888 8887542
Q ss_pred HHH-HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 128 LVT-ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 128 i~~-~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
+.. .+.+..||+|++|++-. |. ...+..+ .-++|++.+++..-
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~--g~------------~~~~~~l-~~~~~~~ivyvSCn 401 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRA--GA------------AEVMQAL-AKLGPKRIVYVSCN 401 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCc--Ch------------HHHHHHH-HhcCCCeEEEEEeC
Confidence 111 13346799999988531 11 1122222 23688888777653
No 162
>KOG3191|consensus
Probab=98.52 E-value=2.7e-06 Score=66.73 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=87.1
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------CCC--CCeEEecCCCCChhHHHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------PID--GAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------~~~--~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
...+|++|||+|..+..|++..+ +.....+.|++|.+ ... ++..+ +.|+.+ -
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~--------~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V-~tdl~~---------~ 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG--------PQALYLATDINPEALEATLETARCNRVHIDVV-RTDLLS---------G 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC--------CCceEEEecCCHHHHHHHHHHHHhcCCcccee-ehhHHh---------h
Confidence 57899999999999999999887 77889999999821 112 34555 666444 2
Q ss_pred hCCCCccEEEeCCCCCCCCCCcc-cHHH---------HHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhC
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREM-DHDL---------ITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY 201 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~-d~~~---------~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F 201 (229)
+..+++|+++-|.+.-++..... ++.. -.+...+.+...-.+|.|.|.|.+........+++++.++..=
T Consensus 106 l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g 185 (209)
T KOG3191|consen 106 LRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKG 185 (209)
T ss_pred hccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcc
Confidence 34589999999886432222111 1111 1223446677777889999999998777777888999887763
Q ss_pred CeeEEE
Q psy1489 202 SQVKIL 207 (229)
Q Consensus 202 ~~v~~~ 207 (229)
..+++.
T Consensus 186 ~~~~~~ 191 (209)
T KOG3191|consen 186 YGVRIA 191 (209)
T ss_pred cceeEE
Confidence 334333
No 163
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.49 E-value=4.6e-07 Score=74.37 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=45.7
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CC-CCCeEEecCCCCChhHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PI-DGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~-~~~~~~~~~D~~~~~~~~~ 127 (229)
.++.+|||+|||+|.++..+++.. ..|+|+|+++ |. .. ..+.+. .+|+..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~-----------~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~-~~d~~~------ 123 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG-----------AKVVASDISPQMVEEARERAPEAGLAGNITFE-VGDLES------ 123 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC-----------CEEEEEECCHHHHHHHHHHHHhcCCccCcEEE-EcCchh------
Confidence 467899999999999999988753 4799999986 21 11 246677 777322
Q ss_pred HHHHhCCCCccEEEeCCC
Q psy1489 128 LVTILKDDKLDVVLSDMA 145 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~ 145 (229)
.++.||+|++...
T Consensus 124 -----~~~~fD~v~~~~~ 136 (230)
T PRK07580 124 -----LLGRFDTVVCLDV 136 (230)
T ss_pred -----ccCCcCEEEEcch
Confidence 2467999998543
No 164
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.48 E-value=2.7e-07 Score=80.13 Aligned_cols=114 Identities=21% Similarity=0.117 Sum_probs=70.6
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC---------------CCCeEEecCCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI---------------DGAVVLSKCDF 119 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~---------------~~~~~~~~~D~ 119 (229)
++.+|||||||-|+-..--... .-.+++|+|++.. . .. -.+.++ .+|.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~----------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~-~~D~ 130 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA----------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFI-AADC 130 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT----------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEE-ESTT
T ss_pred CCCeEEEecCCCchhHHHHHhc----------CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhhee-cccc
Confidence 7899999999999965443332 3469999999851 0 00 134567 7887
Q ss_pred CChhHHHHHHHHhCCC--CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHH
Q psy1489 120 TQPDIQDRLVTILKDD--KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197 (229)
Q Consensus 120 ~~~~~~~~i~~~~~~~--~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l 197 (229)
.... +...+... .||+|-|-.+... .+.+.+..+..|..+...|+|||.||..+.. ...+.+.|
T Consensus 131 f~~~----l~~~~~~~~~~FDvVScQFalHY-------~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d---~~~i~~~l 196 (331)
T PF03291_consen 131 FSES----LREKLPPRSRKFDVVSCQFALHY-------AFESEEKARQFLKNVSSLLKPGGYFIGTTPD---SDEIVKRL 196 (331)
T ss_dssp CCSH----HHCTSSSTTS-EEEEEEES-GGG-------GGSSHHHHHHHHHHHHHTEEEEEEEEEEEE----HHHHHCCH
T ss_pred ccch----hhhhccccCCCcceeehHHHHHH-------hcCCHHHHHHHHHHHHHhcCCCCEEEEEecC---HHHHHHHH
Confidence 7643 34444444 8999999665311 1233345667899999999999999986654 45555555
Q ss_pred Hh
Q psy1489 198 TR 199 (229)
Q Consensus 198 ~~ 199 (229)
+.
T Consensus 197 ~~ 198 (331)
T PF03291_consen 197 RE 198 (331)
T ss_dssp HC
T ss_pred Hh
Confidence 44
No 165
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.48 E-value=5.1e-07 Score=72.41 Aligned_cols=100 Identities=13% Similarity=-0.016 Sum_probs=62.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~~D~~~~~~~~~i 128 (229)
+|.+||||+||+|.++..++.+. ..+|++||.++- .... +++++ .+|+.+ .+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg----------a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~-~~D~~~-----~l 112 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG----------AKVAFLEEDDRKANQTLKENLALLKSGEQAEVV-RNSALR-----AL 112 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC----------CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEE-ehhHHH-----HH
Confidence 57899999999999999998873 358999999961 0122 35666 776533 12
Q ss_pred HHHhCC-CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 129 VTILKD-DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 129 ~~~~~~-~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
...... ..||+|+.|++... .. . ..+...+.. ..+|+++|.++++...
T Consensus 113 ~~~~~~~~~~dvv~~DPPy~~----~~-~----~~~l~~l~~-~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 113 KFLAKKPTFDNVIYLDPPFFN----GA-L----QALLELCEN-NWILEDTVLIVVEEDR 161 (189)
T ss_pred HHhhccCCCceEEEECcCCCC----Cc-H----HHHHHHHHH-CCCCCCCeEEEEEecC
Confidence 222222 34899999887521 11 1 111122222 3578999988887654
No 166
>KOG2198|consensus
Probab=98.46 E-value=2.3e-06 Score=73.98 Aligned_cols=142 Identities=22% Similarity=0.266 Sum_probs=82.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------C--CCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------Y--PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~--~~~~~~~~~~~D~~~~~~~~~ 127 (229)
++||++|||+|++||+-+..+.+.+-. ....|.|++.|.++. . +.+...+. ..|+..-....
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~-----~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~-~~~~~~~p~~~- 225 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHK-----DPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVT-NHDASLFPNIY- 225 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhc-----CCCCCeeEecccCHHHHHHHHHHHhccCCcceeee-cccceeccccc-
Confidence 578999999999999999888876521 112469999999851 1 12233333 33332211000
Q ss_pred HHH--HhCCCCccEEEeCCCCCCCCC--CcccHH----------HHHHHHHHHHHHHHHcccCCCEEEEeecCCC---Ch
Q psy1489 128 LVT--ILKDDKLDVVLSDMAPNATGM--REMDHD----------LITQLAIAVIRFAVTYSKPGADCLIKIWDGR---NR 190 (229)
Q Consensus 128 i~~--~~~~~~~D~V~sd~~~~~~g~--~~~d~~----------~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~---~~ 190 (229)
+.. ......||-|++|.++..-|. ++.+.+ ....++..+|....++||+||++|-.+-+.. +.
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNE 305 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENE 305 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhH
Confidence 000 012347999999997532221 111111 1123556889999999999999987664432 22
Q ss_pred HHHHHHHHhhCCeeEEE
Q psy1489 191 PQLEESITRFYSQVKIL 207 (229)
Q Consensus 191 ~~~~~~l~~~F~~v~~~ 207 (229)
..+-+.|+.....+.++
T Consensus 306 aVV~~~L~~~~~~~~lv 322 (375)
T KOG2198|consen 306 AVVQEALQKVGGAVELV 322 (375)
T ss_pred HHHHHHHHHhcCcccce
Confidence 22335556665444443
No 167
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.45 E-value=9.4e-07 Score=76.27 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=29.3
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
++.+|||+|||+|.++..++++ + .+|+|+|+++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g----------~~V~gvD~S~ 176 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-G----------AIVSASDISA 176 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-C----------CEEEEEECCH
Confidence 5789999999999999999875 2 5899999997
No 168
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.45 E-value=2.8e-06 Score=73.37 Aligned_cols=149 Identities=13% Similarity=0.078 Sum_probs=85.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------C-CCC-CCeEEecCCCCChhHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------Y-PID-GAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~-~~~-~~~~~~~~D~~~~~~~~~ 127 (229)
++.+|||||||+|.+...++.+. +..+++|+|+++. . .+. .+.+..+.|..+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~---------~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~------ 178 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE---------YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA------ 178 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC---------CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh------
Confidence 45799999999999988888765 4579999999972 1 122 233320222221
Q ss_pred HHHH--hCCCCccEEEeCCCCCCCCCCcc----cHHHH--------------------------HHHHHHHHHHHHHccc
Q psy1489 128 LVTI--LKDDKLDVVLSDMAPNATGMREM----DHDLI--------------------------TQLAIAVIRFAVTYSK 175 (229)
Q Consensus 128 i~~~--~~~~~~D~V~sd~~~~~~g~~~~----d~~~~--------------------------~~~~~~~l~~~~~~Lk 175 (229)
+... .+++.||+|+||++...+..... +.... ...+...+.+...+++
T Consensus 179 i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~ 258 (321)
T PRK11727 179 IFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAK 258 (321)
T ss_pred hhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHh
Confidence 1111 13568999999987543322100 00000 0112245555566666
Q ss_pred CCCEEEEeecCCCChHHHHHHHHhh-CCeeEEEcCCCCCCCCceEEEEeccCC
Q psy1489 176 PGADCLIKIWDGRNRPQLEESITRF-YSQVKILKPPSSRSHSAELFLLGRGFK 227 (229)
Q Consensus 176 pgG~~v~~~~~~~~~~~~~~~l~~~-F~~v~~~kp~~sr~~s~E~Y~v~~~~~ 227 (229)
..|+|.+-+-...+...+++.|+.. ...+++. ....++.-..+||=.|.
T Consensus 259 ~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~---e~~qG~~~~~~vaWsf~ 308 (321)
T PRK11727 259 QVLWFTSLVSKKENLPPLYRALKKVGAVEVKTI---EMAQGQKQSRFIAWTFL 308 (321)
T ss_pred hCcEEEEEeeccCCHHHHHHHHHHcCCceEEEE---EEeCCCeeeEEEEeecC
Confidence 6666665455566788888888775 3344443 33344555566765553
No 169
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.43 E-value=1.3e-07 Score=76.66 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=67.5
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CC-CCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PI-DGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~-~~~~~~~~~D~~~~~~~~~i 128 (229)
...+||++||+.|.-+..+++.++ ++++|+.+|+++. . .+ ..++++ .+|..+ ....+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~--------~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~-~gda~~--~l~~l 113 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALP--------EDGKITTIEIDPERAEIARENFRKAGLDDRIEVI-EGDALE--VLPEL 113 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTST--------TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEE-ES-HHH--HHHHH
T ss_pred CCceEEEeccccccHHHHHHHhhc--------ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEE-EeccHh--hHHHH
Confidence 457999999999999999998775 5689999999971 1 12 256777 776554 22222
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
....+.++||+|+.|+.. +. ....+..+.++|+|||.+++.
T Consensus 114 ~~~~~~~~fD~VFiDa~K--------~~------y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 114 ANDGEEGQFDFVFIDADK--------RN------YLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHTTTTTSEEEEEEESTG--------GG------HHHHHHHHHHHEEEEEEEEEE
T ss_pred HhccCCCceeEEEEcccc--------cc------hhhHHHHHhhhccCCeEEEEc
Confidence 221223579999999853 11 224566677899999999875
No 170
>KOG1500|consensus
Probab=98.40 E-value=1.2e-06 Score=74.76 Aligned_cols=92 Identities=23% Similarity=0.291 Sum_probs=64.4
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-----------CCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-----------IDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-----------~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
.+..|||+|||+|.++..+++. ++.+|++|+.+.|.. ..++.++ .|-+.+.+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA----------GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI-~GKiEdie------ 239 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA----------GAKKVYAVEASEMAQYARKLVASNNLADRITVI-PGKIEDIE------ 239 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh----------CcceEEEEehhHHHHHHHHHHhcCCccceEEEc-cCcccccc------
Confidence 4789999999999999988875 457999999998742 1346677 77776632
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v 181 (229)
+ .+++|+|+|.++ |.--. . +...+..-.|.++|+|.|.+.
T Consensus 240 --L-PEk~DviISEPM----G~mL~-N----ERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 240 --L-PEKVDVIISEPM----GYMLV-N----ERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred --C-chhccEEEeccc----hhhhh-h----HHHHHHHHHHHhhcCCCCccc
Confidence 3 468999999543 21111 1 222333445789999999875
No 171
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.40 E-value=5.4e-07 Score=74.06 Aligned_cols=101 Identities=10% Similarity=-0.048 Sum_probs=69.1
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC---------------------CCCCeEEec
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP---------------------IDGAVVLSK 116 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~---------------------~~~~~~~~~ 116 (229)
.++.+||+.|||.|.-+..|+.+ | ..|+|+|+|+. .. -..+++. +
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~-G----------~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~-~ 109 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK-G----------VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIY-V 109 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC-C----------CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEE-E
Confidence 45789999999999999999876 3 58999999962 10 0146777 8
Q ss_pred CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
+|+.+..... -..+.||+|+--++... ...++..+....+.++|+|||.+++..+.
T Consensus 110 gD~f~l~~~~-----~~~~~fD~VyDra~~~A---------lpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 110 ADIFNLPKIA-----NNLPVFDIWYDRGAYIA---------LPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ccCcCCCccc-----cccCCcCeeeeehhHhc---------CCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 9988732100 01247999886544311 11133456677789999999998876654
No 172
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1e-06 Score=69.57 Aligned_cols=66 Identities=27% Similarity=0.271 Sum_probs=51.0
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C-----CC----CCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y-----PI----DGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~-----~~----~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.|.+|+|||||||.++..++.. +..+|+|||+.+- . +. -++.++ .+|+.+.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l----------Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~-~~dv~~~-------- 105 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL----------GASRVLAVDIDPEALEIARANAEELLGDVEFV-VADVSDF-------- 105 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc----------CCcEEEEEecCHHHHHHHHHHHHhhCCceEEE-Ecchhhc--------
Confidence 5789999999999999887654 3579999999971 1 11 257888 8888772
Q ss_pred HhCCCCccEEEeCCCCCC
Q psy1489 131 ILKDDKLDVVLSDMAPNA 148 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~ 148 (229)
...+|.|+.|+++..
T Consensus 106 ---~~~~dtvimNPPFG~ 120 (198)
T COG2263 106 ---RGKFDTVIMNPPFGS 120 (198)
T ss_pred ---CCccceEEECCCCcc
Confidence 467999999988743
No 173
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=72.30 Aligned_cols=105 Identities=16% Similarity=0.149 Sum_probs=74.4
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C---------CCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I---------YPIDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~---------~~~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
..+||||||.|.+...+|++. |+..++|||+.. + ..+.|+.++ +.|.... +..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n---------P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~-~~DA~~~-----l~~~ 114 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN---------PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLL-CGDAVEV-----LDYL 114 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC---------CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEE-cCCHHHH-----HHhc
Confidence 489999999999999999986 788999999985 1 234578888 8876652 3344
Q ss_pred hCCCCccEEEeCCCC-CCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 132 LKDDKLDVVLSDMAP-NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
.++++.|-|..+.+- .... .|....-.....+....+.|+|||.+.+++..
T Consensus 115 ~~~~sl~~I~i~FPDPWpKk----RH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 115 IPDGSLDKIYINFPDPWPKK----RHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCCeeEEEEECCCCCCCc----cccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 455599999987652 1111 12111112346788899999999999887653
No 174
>KOG3045|consensus
Probab=98.37 E-value=3.3e-06 Score=69.78 Aligned_cols=102 Identities=20% Similarity=0.256 Sum_probs=69.3
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccE
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV 139 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~ 139 (229)
+....|.|+|||-+-++. . ....|...|+-+ .+-+++ .+|+.+.. ++++++|+
T Consensus 179 ~~~~vIaD~GCGEakiA~----~----------~~~kV~SfDL~a----~~~~V~-~cDm~~vP--------l~d~svDv 231 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----S----------ERHKVHSFDLVA----VNERVI-ACDMRNVP--------LEDESVDV 231 (325)
T ss_pred cCceEEEecccchhhhhh----c----------cccceeeeeeec----CCCcee-eccccCCc--------CccCcccE
Confidence 345789999999997765 1 235899999866 233455 78888843 67899999
Q ss_pred EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--CChHHHHHHHHhh
Q psy1489 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--RNRPQLEESITRF 200 (229)
Q Consensus 140 V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~~~~~~~~~l~~~ 200 (229)
++.-.+. .| ......+.+|.|+|++||.+.+..-.. .+...|...+..+
T Consensus 232 aV~CLSL--Mg----------tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~l 282 (325)
T KOG3045|consen 232 AVFCLSL--MG----------TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKL 282 (325)
T ss_pred EEeeHhh--hc----------ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHc
Confidence 9973332 12 123567899999999999998754332 3444455555443
No 175
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.36 E-value=6.3e-07 Score=74.36 Aligned_cols=96 Identities=22% Similarity=0.255 Sum_probs=70.3
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
+.+..+|||||+|.|.++..+++.. |+.+++..|+-... ..++++++ .+|+.++ ++.
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~---------P~l~~~v~Dlp~v~~~~~~~~rv~~~-~gd~f~~---------~P~ 158 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY---------PNLRATVFDLPEVIEQAKEADRVEFV-PGDFFDP---------LPV 158 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS---------TTSEEEEEE-HHHHCCHHHTTTEEEE-ES-TTTC---------CSS
T ss_pred ccCccEEEeccCcchHHHHHHHHHC---------CCCcceeeccHhhhhccccccccccc-cccHHhh---------hcc
Confidence 4566799999999999999999887 78899999984321 24678999 9998853 444
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC--CEEEEee
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG--ADCLIKI 184 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg--G~~v~~~ 184 (229)
+|+++..-.. +++. -+.+..+|+.+.+.|+|| |++++..
T Consensus 159 --~D~~~l~~vL-----h~~~----d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 159 --ADVYLLRHVL-----HDWS----DEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp --ESEEEEESSG-----GGS-----HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred --ccceeeehhh-----hhcc----hHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 9999984322 2222 255778999999999999 9988754
No 176
>KOG1596|consensus
Probab=98.35 E-value=8.7e-07 Score=72.37 Aligned_cols=99 Identities=28% Similarity=0.339 Sum_probs=75.2
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------YPIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
++||.+||=||++.|.--.+++..++ |.+.|++|+.++- ...+|+.-+ ..|.+.+.-..++
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVG--------peG~VYAVEfs~rsGRdL~nmAkkRtNiiPI-iEDArhP~KYRml- 223 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVG--------PEGCVYAVEFSHRSGRDLINMAKKRTNIIPI-IEDARHPAKYRML- 223 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccC--------CCceEEEEEecccchHHHHHHhhccCCceee-eccCCCchheeee-
Confidence 68999999999999999999999988 8999999999862 134577777 7888876433222
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
-..+|+|++|.++ .|.. ..+.-.|..+||+||.|++.+
T Consensus 224 ----VgmVDvIFaDvaq-------pdq~------RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 224 ----VGMVDVIFADVAQ-------PDQA------RIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ----eeeEEEEeccCCC-------chhh------hhhhhhhhhhhccCCeEEEEE
Confidence 2378999999864 1222 233345888999999999876
No 177
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.34 E-value=2.7e-06 Score=65.94 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=77.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC------CCCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP------IYPIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~------~~~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
...|.-||++|.|+|.++..++.+.- +...+++++.++ +...+++.++ .+|..+.++. + ...
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv--------~~~~L~~iE~~~dF~~~L~~~~p~~~ii-~gda~~l~~~--l-~e~ 113 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGV--------RPESLTAIEYSPDFVCHLNQLYPGVNII-NGDAFDLRTT--L-GEH 113 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCC--------CccceEEEEeCHHHHHHHHHhCCCcccc-ccchhhHHHH--H-hhc
Confidence 35678999999999999999887643 556899999997 2345778888 9998875532 1 224
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
.+..||.|+|..+.. +. .++...++|+.+...|.+||-++.-.+.
T Consensus 114 ~gq~~D~viS~lPll-----~~----P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 114 KGQFFDSVISGLPLL-----NF----PMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCCeeeeEEeccccc-----cC----cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 567899999965431 11 1223346788889999999999875554
No 178
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.34 E-value=1.1e-06 Score=72.88 Aligned_cols=91 Identities=22% Similarity=0.238 Sum_probs=64.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC---CCCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---PIDGAVVLSKCDFTQPDIQDRLVTILKDDK 136 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~ 136 (229)
...++||||+|-|+.+..++.... +|++.|.|+ |. .-.+..++...|+.+ .+.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~-----------~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~-----------~~~~ 151 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK-----------EVYATEASPPMRWRLSKKGFTVLDIDDWQQ-----------TDFK 151 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc-----------eEEeecCCHHHHHHHHhCCCeEEehhhhhc-----------cCCc
Confidence 357899999999999999998763 899999998 53 124555551222221 2468
Q ss_pred ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 137 LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 137 ~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
||+|.|-- -......+...|+.+.+.|+|+|.+++.+
T Consensus 152 fDvIscLN-----------vLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 152 FDVISCLN-----------VLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred eEEEeehh-----------hhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999822 22222345578888999999999998765
No 179
>PLN02823 spermine synthase
Probab=98.33 E-value=8.9e-06 Score=70.80 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=80.6
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------C-------CCCCeEEecCCCCChhHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------P-------IDGAVVLSKCDFTQPDIQ 125 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~-------~~~~~~~~~~D~~~~~~~ 125 (229)
...+||.||+|.|+.+..+++.. +..+|+.||+++ +. + -++++++ .+|..+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~---------~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~-~~Da~~---- 168 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK---------TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI-INDARA---- 168 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC---------CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE-EChhHH----
Confidence 45799999999999988877653 346899999997 10 1 2456666 666544
Q ss_pred HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHH-HHHHcccCCCEEEEeecCC------CChHHHHHHHH
Q psy1489 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIR-FAVTYSKPGADCLIKIWDG------RNRPQLEESIT 198 (229)
Q Consensus 126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~-~~~~~LkpgG~~v~~~~~~------~~~~~~~~~l~ 198 (229)
.+. ..+++||+|+.|......+.. ..++ .....++ .+.+.|+|||.+++..-.. .....+...++
T Consensus 169 -~L~--~~~~~yDvIi~D~~dp~~~~~-~~~L----yt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~ 240 (336)
T PLN02823 169 -ELE--KRDEKFDVIIGDLADPVEGGP-CYQL----YTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLR 240 (336)
T ss_pred -HHh--hCCCCccEEEecCCCccccCc-chhh----ccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHH
Confidence 122 125689999999642111000 0011 1124565 6889999999998754221 11355677788
Q ss_pred hhCCeeEEEc
Q psy1489 199 RFYSQVKILK 208 (229)
Q Consensus 199 ~~F~~v~~~k 208 (229)
+.|..|..+.
T Consensus 241 ~vF~~v~~y~ 250 (336)
T PLN02823 241 QVFKYVVPYT 250 (336)
T ss_pred HhCCCEEEEE
Confidence 8898887765
No 180
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.33 E-value=3.4e-06 Score=66.65 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=64.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-------------CCCCCeEEecCCCCChhHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-------------PIDGAVVLSKCDFTQPDIQ 125 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-------------~~~~~~~~~~~D~~~~~~~ 125 (229)
..++.+||+||||+|..+..++... +..+|+..|..+.. ....+.+. .-|+.+...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~---------~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~-~L~Wg~~~~- 111 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF---------GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVR-PLDWGDELD- 111 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT----------T-SEEEEEE-S-HHHHHHHHHHTT--------EEE-E--TTS-HH-
T ss_pred hcCCceEEEECCccchhHHHHHhcc---------CCceEEEeccchhhHHHHHHHHhccccccccccCc-EEEecCccc-
Confidence 3467899999999999888888763 34699999988621 11345565 667766321
Q ss_pred HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC-CCChHHHHHHHHh
Q psy1489 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD-GRNRPQLEESITR 199 (229)
Q Consensus 126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~-~~~~~~~~~~l~~ 199 (229)
...+....||+|++.-.. .. .+.....+..+.++|+|+|.+++..-. ......|++.+++
T Consensus 112 ---~~~~~~~~~D~IlasDv~---Y~--------~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 112 ---SDLLEPHSFDVILASDVL---YD--------EELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp ---HHHHS-SSBSEEEEES-----S---------GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH--
T ss_pred ---ccccccccCCEEEEeccc---ch--------HHHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhhh
Confidence 223456789999963221 11 123345667788899999987665432 3345667776654
No 181
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.32 E-value=6.2e-06 Score=74.29 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=51.8
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~ 127 (229)
+.++.+|||+|||+|.++..+++.. .+|+|+|+++ + ..+.+++++ .+|+.+.
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~-----------~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~-~~d~~~~----- 352 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA-----------KSVVGIEVVPESVEKAQQNAELNGIANVEFL-AGTLETV----- 352 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC-----------CEEEEEEcCHHHHHHHHHHHHHhCCCceEEE-eCCHHHH-----
Confidence 3467899999999999999998763 4899999996 2 124578888 8887542
Q ss_pred HHHH-hCCCCccEEEeCCC
Q psy1489 128 LVTI-LKDDKLDVVLSDMA 145 (229)
Q Consensus 128 i~~~-~~~~~~D~V~sd~~ 145 (229)
+... ..+..||+|+.|++
T Consensus 353 l~~~~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 353 LPKQPWAGQIPDVLLLDPP 371 (431)
T ss_pred HHHHHhcCCCCCEEEECcC
Confidence 1111 23457999999886
No 182
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=3.2e-05 Score=61.78 Aligned_cols=97 Identities=27% Similarity=0.346 Sum_probs=74.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C-------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I-------YPIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~-------~~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
+++|.+||=||+.+|.-..+++... +.|.++||+.++ | ...+|+--+ .+|.+.++....+.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv---------~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PI-L~DA~~P~~Y~~~V 143 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIV---------GEGRIYAVEFSPRPMRELLDVAEKRPNIIPI-LEDARKPEKYRHLV 143 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhcc---------CCCcEEEEEecchhHHHHHHHHHhCCCceee-ecccCCcHHhhhhc
Confidence 5789999999999999999999987 568999999997 2 134677778 89998876554333
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+.+|+|+.|.+- .+ ..+-+...+..+|++||.+++.
T Consensus 144 -----e~VDviy~DVAQ-------p~------Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 144 -----EKVDVIYQDVAQ-------PN------QAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred -----ccccEEEEecCC-------ch------HHHHHHHHHHHhcccCCeEEEE
Confidence 369999998752 11 1345667899999999966543
No 183
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.32 E-value=3.2e-06 Score=73.06 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=49.1
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
++.+|||+|||+|.++..+++.. .+|+|+|+++ + ..+.+++++ ++|+.+. .
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-----------~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~-~~D~~~~------~ 234 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-----------MQLTGIEISAEAIACAKQSAAELGLTNVQFQ-ALDSTQF------A 234 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEE-EcCHHHH------H
Confidence 46899999999999999998742 5899999996 2 123467888 8886542 1
Q ss_pred HHhCCCCccEEEeCCC
Q psy1489 130 TILKDDKLDVVLSDMA 145 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~ 145 (229)
.. ..+.||+|++|++
T Consensus 235 ~~-~~~~~D~Vv~dPP 249 (315)
T PRK03522 235 TA-QGEVPDLVLVNPP 249 (315)
T ss_pred Hh-cCCCCeEEEECCC
Confidence 11 2347999999965
No 184
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.31 E-value=1.5e-06 Score=79.84 Aligned_cols=106 Identities=11% Similarity=0.070 Sum_probs=75.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
.+..+||+|||.|.+...+|... |+..++|+|+..- ..+.|+.++ .+|+. .+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~---------p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~-~~~~~------~~~ 410 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN---------PDALFIGVEVYLNGVANVLKLAGEQNITNFLLF-PNNLD------LIL 410 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC---------CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEE-cCCHH------HHH
Confidence 46789999999999999999886 7889999999851 235577777 66532 244
Q ss_pred HHhCCCCccEEEeCCCC-CCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 130 TILKDDKLDVVLSDMAP-NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
..++++++|.|+.+.+- .+..- |....-.....+....++|+|||.+.+++..
T Consensus 411 ~~~~~~sv~~i~i~FPDPWpKkr----h~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 411 NDLPNNSLDGIYILFPDPWIKNK----QKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred HhcCcccccEEEEECCCCCCCCC----CccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 55788899999987752 21111 1111112346788899999999999887654
No 185
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.28 E-value=2.6e-06 Score=72.73 Aligned_cols=72 Identities=22% Similarity=0.441 Sum_probs=54.6
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
+.+|..+||++||.|+.+..+++.++ +.++|+|+|.++ +. ...++.++ ++|+.+. .
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~--------~~g~VigiD~D~~al~~ak~~L~~~~ri~~i-~~~f~~l------~ 81 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLG--------PKGRLIAIDRDPDAIAAAKDRLKPFGRFTLV-HGNFSNL------K 81 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCC--------CCCEEEEEcCCHHHHHHHHHhhccCCcEEEE-eCCHHHH------H
Confidence 46788999999999999999999874 568999999997 21 12367888 8887773 2
Q ss_pred HHhCC--CCccEEEeCCC
Q psy1489 130 TILKD--DKLDVVLSDMA 145 (229)
Q Consensus 130 ~~~~~--~~~D~V~sd~~ 145 (229)
..+++ ..+|.|+.|..
T Consensus 82 ~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 82 EVLAEGLGKVDGILLDLG 99 (296)
T ss_pred HHHHcCCCccCEEEECCC
Confidence 22322 27999999874
No 186
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.25 E-value=1.4e-06 Score=71.14 Aligned_cols=95 Identities=18% Similarity=0.172 Sum_probs=68.5
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------CCC-CCeEEec-CCCCChhHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------PID-GAVVLSK-CDFTQPDIQD 126 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~~~-~~~~~~~-~D~~~~~~~~ 126 (229)
....+||++|++.|.-+..+|.-++ .+++++.+|+++ +. .+. .+..+ . +|..+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~--------~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~-~~gdal~----- 123 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALP--------DDGRLTTIERDEERAEIARENLAEAGVDDRIELL-LGGDALD----- 123 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCC--------CCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEE-ecCcHHH-----
Confidence 4578999999999999999998874 378999999997 21 122 24555 4 34333
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.+.. ...++||+|+.|.... .....+..+.++|+|||.+++.
T Consensus 124 ~l~~-~~~~~fDliFIDadK~--------------~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 124 VLSR-LLDGSFDLVFIDADKA--------------DYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHHh-ccCCCccEEEEeCChh--------------hCHHHHHHHHHHhCCCcEEEEe
Confidence 2333 3468999999988541 1235677788999999999874
No 187
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.24 E-value=2.3e-06 Score=71.91 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=51.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
+.++.+|||+|||+|.++..++++. .+|+|+|+++ |. ...++.++ .+|+.+..
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-----------~~v~~vEid~~~~~~l~~~~~~~~~v~ii-~~D~~~~~------ 88 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-----------KKVYAIELDPRLAEFLRDDEIAAGNVEII-EGDALKVD------ 88 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-----------CEEEEEECCHHHHHHHHHHhccCCCEEEE-EeccccCC------
Confidence 3568999999999999999999873 5899999996 21 13468888 89987632
Q ss_pred HHhCCCCccEEEeCCCCC
Q psy1489 130 TILKDDKLDVVLSDMAPN 147 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~ 147 (229)
-..||.|++|.+..
T Consensus 89 ----~~~~d~Vv~NlPy~ 102 (258)
T PRK14896 89 ----LPEFNKVVSNLPYQ 102 (258)
T ss_pred ----chhceEEEEcCCcc
Confidence 23479999988753
No 188
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.23 E-value=5.1e-07 Score=72.02 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=60.7
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C---------CCC-CCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y---------PID-GAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~---------~~~-~~~~~~~~D~~~~~~~~~i 128 (229)
+|.+||||.||+|.++..++.+ ++.+|+.||.++. . ... .+.++ .+|... .+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR----------GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~-~~d~~~-----~l 105 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR----------GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVI-KGDAFK-----FL 105 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT----------T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEE-ESSHHH-----HH
T ss_pred CCCeEEEcCCccCccHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeee-ccCHHH-----HH
Confidence 6899999999999999998877 3579999999861 0 112 35566 666433 12
Q ss_pred HHH-hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHH--HHcccCCCEEEEeecCC
Q psy1489 129 VTI-LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFA--VTYSKPGADCLIKIWDG 187 (229)
Q Consensus 129 ~~~-~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~--~~~LkpgG~~v~~~~~~ 187 (229)
... ....+||+|+.|++... +.. ...++..+ ..+|+++|.++++....
T Consensus 106 ~~~~~~~~~fDiIflDPPY~~------~~~-----~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 106 LKLAKKGEKFDIIFLDPPYAK------GLY-----YEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHCTS-EEEEEE--STTS------CHH-----HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HhhcccCCCceEEEECCCccc------chH-----HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 221 24678999999986421 111 12233333 37899999999987654
No 189
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.22 E-value=5.4e-06 Score=69.12 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=67.7
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------C-CCCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------P-IDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~-~~~~~~~~~~D~~~~~~~~~i 128 (229)
...+||++|++.|.-+..++.-++ +.++|+.+|.++. . . ...++++ .+|..+ .+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~--------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~-~G~a~e-----~L 144 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP--------EDGKILAMDINRENYELGLPVIQKAGVAHKIDFR-EGPALP-----VL 144 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC--------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE-eccHHH-----HH
Confidence 457999999999999999998765 6789999999871 0 1 1357777 777544 23
Q ss_pred HHHhC----CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 129 VTILK----DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 129 ~~~~~----~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
..... .++||+|+.|+.. . .....+..+.++|+|||.+++.
T Consensus 145 ~~l~~~~~~~~~fD~iFiDadK----------~----~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDADK----------D----NYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHhccccCCcccEEEecCCH----------H----HhHHHHHHHHHhcCCCeEEEEc
Confidence 33222 2589999998843 1 1234556678899999998864
No 190
>KOG2899|consensus
Probab=98.20 E-value=2.9e-06 Score=69.47 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=30.1
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
+..+||+||..|..++.+++..+ ...|+|+||.+
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~---------~r~iLGvDID~ 92 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFG---------PRRILGVDIDP 92 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhc---------cceeeEeeccH
Confidence 57899999999999999999885 34799999985
No 191
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.19 E-value=1.6e-05 Score=63.13 Aligned_cols=97 Identities=21% Similarity=0.184 Sum_probs=64.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcE---------EEEEeCCC-CC----------CCC-CCeEEecC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGL---------VLSVDKLP-IY----------PID-GAVVLSKC 117 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~---------v~gvD~~~-~~----------~~~-~~~~~~~~ 117 (229)
.+++..|||-.||+|.+.+.++.... ... ++|+|+++ +. .+. .+.+. +.
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~---------~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~-~~ 95 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGA---------NIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI-QW 95 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHT---------TTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE-E-
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhh---------CcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE-ec
Confidence 46789999999999999988776642 233 89999996 11 122 25666 78
Q ss_pred CCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccC
Q psy1489 118 DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKP 176 (229)
Q Consensus 118 D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp 176 (229)
|+++.. +.++.+|.|++|++. |.+.........+...+++++.++|++
T Consensus 96 D~~~l~--------~~~~~~d~IvtnPPy---G~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 96 DARELP--------LPDGSVDAIVTNPPY---GRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -GGGGG--------GTTSBSCEEEEE--S---TTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred chhhcc--------cccCCCCEEEECcch---hhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 887732 346789999999975 555554444556677889999999999
No 192
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.18 E-value=1.7e-06 Score=73.98 Aligned_cols=67 Identities=19% Similarity=0.365 Sum_probs=51.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------C-CCCCeEEecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY----------P-IDGAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~----------~-~~~~~~~~~~D~~~~~~~~ 126 (229)
+.++++|||+|||+|.++..+++.. .+|+|+|+++ |. . ..+++++ .+|+.+.+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~-----------~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii-~~Dal~~~--- 98 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLA-----------KKVIAIEIDPRMVAELKKRFQNSPLASKLEVI-EGDALKTE--- 98 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhC-----------CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEE-ECCHhhhc---
Confidence 4578999999999999999998763 5899999996 21 1 3468888 89876622
Q ss_pred HHHHHhCCCCccEEEeCCCCC
Q psy1489 127 RLVTILKDDKLDVVLSDMAPN 147 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~ 147 (229)
...||.|++|.+.+
T Consensus 99 -------~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 99 -------FPYFDVCVANVPYQ 112 (294)
T ss_pred -------ccccCEEEecCCcc
Confidence 23689999998754
No 193
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.18 E-value=1.5e-06 Score=73.67 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=50.8
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-----CC--CCCeEEecCCCCChhHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-----PI--DGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-----~~--~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
+.++.+|||+|||+|.++..++++. .+|+|+|+++ |. .. ++++++ .+|+.+.+..
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~-----------~~v~avE~d~~~~~~~~~~~~~~~v~~i-~~D~~~~~~~----- 102 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERA-----------AKVTAVEIDRDLAPILAETFAEDNLTII-EGDALKVDLS----- 102 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhC-----------CcEEEEECCHHHHHHHHHhhccCceEEE-EChhhcCCHH-----
Confidence 4578899999999999999999873 3899999997 21 11 468888 8998874311
Q ss_pred HhCCCCccEEEeCCCC
Q psy1489 131 ILKDDKLDVVLSDMAP 146 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~ 146 (229)
+-.+|.|++|.+.
T Consensus 103 ---~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ---ELQPLKVVANLPY 115 (272)
T ss_pred ---HcCcceEEEeCCc
Confidence 1116899998764
No 194
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.17 E-value=4.7e-07 Score=81.61 Aligned_cols=93 Identities=27% Similarity=0.358 Sum_probs=60.1
Q ss_pred CCeeEeecCCCCchHHHHHHH---HhccCCCCCCCCcEEEEEeCCCCC-----------CC-CCCeEEecCCCCChhHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKL---VNSHGYDSKQPKGLVLSVDKLPIY-----------PI-DGAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~---~~~~~~~~~~~~~~v~gvD~~~~~-----------~~-~~~~~~~~~D~~~~~~~~ 126 (229)
+..|||+|||+|-++..+++. .+ .+.+|+||+-+++. .. ..++++ ++|+++..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~--------~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi-~~d~r~v~--- 254 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAG--------GAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVI-HGDMREVE--- 254 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHC--------CESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEE-ES-TTTSC---
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhC--------CCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEE-eCcccCCC---
Confidence 578999999999998665543 22 34699999999731 11 358899 99998843
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v 181 (229)
+ +.++|+|+|-.. |. ..++ ++..+.|..+.++|||||.++
T Consensus 255 -----l-pekvDIIVSElL----Gs-fg~n----El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 255 -----L-PEKVDIIVSELL----GS-FGDN----ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -----H-SS-EEEEEE-------BT-TBTT----TSHHHHHHHGGGGEEEEEEEE
T ss_pred -----C-CCceeEEEEecc----CC-cccc----ccCHHHHHHHHhhcCCCCEEe
Confidence 2 458999999543 21 1122 122345777889999999886
No 195
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.12 E-value=1e-05 Score=67.78 Aligned_cols=66 Identities=20% Similarity=0.259 Sum_probs=49.2
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CCCCCeEEecCCCCChhHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
..++.+|||+|||+|.++..++++. ..|+++|+++ +. ...++.++ .+|+.+....
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~-----------~~v~~iE~d~~~~~~l~~~~~~~~~v~v~-~~D~~~~~~~---- 90 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRA-----------KKVTAIEIDPRLAEILRKLLSLYERLEVI-EGDALKVDLP---- 90 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhC-----------CcEEEEECCHHHHHHHHHHhCcCCcEEEE-ECchhcCChh----
Confidence 3467899999999999999999874 3699999987 21 12467788 8888774311
Q ss_pred HHhCCCCcc---EEEeCCCC
Q psy1489 130 TILKDDKLD---VVLSDMAP 146 (229)
Q Consensus 130 ~~~~~~~~D---~V~sd~~~ 146 (229)
.+| +|+++.+.
T Consensus 91 ------~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 ------DFPKQLKVVSNLPY 104 (253)
T ss_pred ------HcCCcceEEEcCCh
Confidence 244 99998754
No 196
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.04 E-value=1.3e-05 Score=65.64 Aligned_cols=121 Identities=18% Similarity=0.171 Sum_probs=75.3
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C------C-------C--------CCCeEEe
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y------P-------I--------DGAVVLS 115 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~------~-------~--------~~~~~~~ 115 (229)
..++.+||+.|||.|.-...|+++ | ..|+|+|+++. . . . .++++.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~-G----------~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~- 102 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ-G----------HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY- 102 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT-T----------EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE-
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC-C----------CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE-
Confidence 456789999999999999999986 3 59999999962 0 1 1 135677
Q ss_pred cCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE--EeecC-----CC
Q psy1489 116 KCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL--IKIWD-----GR 188 (229)
Q Consensus 116 ~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v--~~~~~-----~~ 188 (229)
++|+.+... -..++||+|+--.+..+ ++. ++..+-.+.+.++|+|||.++ +-.+. ++
T Consensus 103 ~gDfF~l~~-------~~~g~fD~iyDr~~l~A--lpp-------~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GP 166 (218)
T PF05724_consen 103 CGDFFELPP-------EDVGKFDLIYDRTFLCA--LPP-------EMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGP 166 (218)
T ss_dssp ES-TTTGGG-------SCHHSEEEEEECSSTTT--S-G-------GGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSS
T ss_pred EcccccCCh-------hhcCCceEEEEeccccc--CCH-------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCc
Confidence 899988431 11247999997554321 111 223455667899999999943 32232 11
Q ss_pred ----ChHHHHHHHHhhCCeeEEE
Q psy1489 189 ----NRPQLEESITRFYSQVKIL 207 (229)
Q Consensus 189 ----~~~~~~~~l~~~F~~v~~~ 207 (229)
...++.+.+...|+-..+.
T Consensus 167 Pf~v~~~ev~~l~~~~f~i~~l~ 189 (218)
T PF05724_consen 167 PFSVTEEEVRELFGPGFEIEELE 189 (218)
T ss_dssp S----HHHHHHHHTTTEEEEEEE
T ss_pred CCCCCHHHHHHHhcCCcEEEEEe
Confidence 2466667776666544443
No 197
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.04 E-value=2.9e-05 Score=61.73 Aligned_cols=102 Identities=23% Similarity=0.199 Sum_probs=64.7
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------C-CCCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------P-IDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~-~~~~~~~~~~D~~~~~~~~~i 128 (229)
.|.+||||-+|+|+.+..++.+ .+.+++.||.+.-. . -.++.++ ..|... .+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR----------GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~-~~da~~-----~L 106 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR----------GAARVVFVEKDRKAVKILKENLKALGLEGEARVL-RNDALR-----AL 106 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC----------CCceEEEEecCHHHHHHHHHHHHHhCCccceEEE-eecHHH-----HH
Confidence 5899999999999999998887 35799999998510 1 1245555 555441 12
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHH-HHHHHHHHcccCCCEEEEeecCC
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAI-AVIRFAVTYSKPGADCLIKIWDG 187 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~-~~l~~~~~~LkpgG~~v~~~~~~ 187 (229)
...-..+.||+|+.|++.. .+. ..... ..+..-..+|+|+|.++++.-..
T Consensus 107 ~~~~~~~~FDlVflDPPy~-~~l--------~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYA-KGL--------LDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HhcCCCCcccEEEeCCCCc-cch--------hhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2211122499999999763 111 11011 11122457899999999976544
No 198
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.03 E-value=2.3e-05 Score=69.35 Aligned_cols=91 Identities=10% Similarity=0.065 Sum_probs=59.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
++.+|||||||+|.++..++.. ...|+|||+++. ..+.++.++ .+|+.+. +.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~-----------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~-~~d~~~~-----~~ 295 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP-----------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFA-ALDSAKF-----AT 295 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc-----------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEE-ECCHHHH-----HH
Confidence 4679999999999999998854 258999999961 123467788 8886542 11
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
. . ...||+|+.|++-. |. +. .++..+ ..++|++.+++..
T Consensus 296 ~-~-~~~~D~vi~DPPr~--G~---~~--------~~l~~l-~~~~p~~ivyvsc 334 (374)
T TIGR02085 296 A-Q-MSAPELVLVNPPRR--GI---GK--------ELCDYL-SQMAPKFILYSSC 334 (374)
T ss_pred h-c-CCCCCEEEECCCCC--CC---cH--------HHHHHH-HhcCCCeEEEEEe
Confidence 1 1 24599999997531 21 11 222222 2378988777764
No 199
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.02 E-value=2.5e-05 Score=69.26 Aligned_cols=90 Identities=22% Similarity=0.103 Sum_probs=62.5
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
+.+|||++||+|.++..++... +..+|+++|+++- ..+.++++. .+|+... +..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~---------~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~-~~Da~~~-----l~~ 122 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALET---------GVEKVTLNDINPDAVELIKKNLELNGLENEKVF-NKDANAL-----LHE 122 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEE-hhhHHHH-----Hhh
Confidence 4689999999999999998765 3358999999961 123344566 6665331 111
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
...||+|+.|+. |.. ...+..+.+.+++||.+.+..
T Consensus 123 ---~~~fD~V~lDP~----Gs~-----------~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 123 ---ERKFDVVDIDPF----GSP-----------APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---cCCCCEEEECCC----CCc-----------HHHHHHHHHHhcCCCEEEEEe
Confidence 457999999863 221 135566777889999998764
No 200
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.00 E-value=7.1e-06 Score=66.26 Aligned_cols=88 Identities=25% Similarity=0.297 Sum_probs=56.4
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCC-CeEEecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDG-AVVLSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~-~~~~~~~D~~~~~~~~ 126 (229)
+.+|+.|+|+.||-|.|+..+|+.. ....|+|+|++|. ..+.+ +..+ .+|..+.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~---------~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~-~~D~~~~---- 164 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG---------KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVI-NGDAREF---- 164 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT----------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEE-ES-GGG-----
T ss_pred CCcceEEEEccCCccHHHHHHhhhc---------CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEE-cCCHHHh----
Confidence 6789999999999999999999853 4468999999972 12333 5677 8887652
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEE
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADC 180 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~ 180 (229)
.+...+|.|+++.+.. ....|..+..++++||.+
T Consensus 165 -----~~~~~~drvim~lp~~---------------~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 165 -----LPEGKFDRVIMNLPES---------------SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp -------TT-EEEEEE--TSS---------------GGGGHHHHHHHEEEEEEE
T ss_pred -----cCccccCEEEECChHH---------------HHHHHHHHHHHhcCCcEE
Confidence 2267899999977541 123556688889998875
No 201
>KOG2940|consensus
Probab=98.00 E-value=9.1e-06 Score=66.17 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=73.4
Q ss_pred cCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC------CCCCCe--EEecCCCCChhHHH
Q psy1489 56 IKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY------PIDGAV--VLSKCDFTQPDIQD 126 (229)
Q Consensus 56 ~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~------~~~~~~--~~~~~D~~~~~~~~ 126 (229)
|..-+....++|+||+-|..+.++..+ .-.+++-+|.|. |. ..+.+. .. .+|=..
T Consensus 67 fD~kk~fp~a~diGcs~G~v~rhl~~e----------~vekli~~DtS~~M~~s~~~~qdp~i~~~~~-v~DEE~----- 130 (325)
T KOG2940|consen 67 FDCKKSFPTAFDIGCSLGAVKRHLRGE----------GVEKLIMMDTSYDMIKSCRDAQDPSIETSYF-VGDEEF----- 130 (325)
T ss_pred HHHhhhCcceeecccchhhhhHHHHhc----------chhheeeeecchHHHHHhhccCCCceEEEEE-ecchhc-----
Confidence 333344568999999999999988765 235899999986 31 113332 22 343222
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHH
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l 197 (229)
+. +.++++|+|++.++. ++.++ +-..+..+...|||.|.|+-.++.+...-++.-.+
T Consensus 131 -Ld--f~ens~DLiisSlsl-----HW~Nd------LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~sl 187 (325)
T KOG2940|consen 131 -LD--FKENSVDLIISSLSL-----HWTND------LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSL 187 (325)
T ss_pred -cc--ccccchhhhhhhhhh-----hhhcc------CchHHHHHHHhcCCCccchhHHhccccHHHHHHHh
Confidence 11 668899999998754 22211 22345568889999999999888877666655433
No 202
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.98 E-value=0.00068 Score=58.65 Aligned_cols=130 Identities=10% Similarity=0.038 Sum_probs=78.1
Q ss_pred CccchhhhhhHhh--hhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------C
Q psy1489 40 NYRCRSAFKLLEI--DSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------Y 106 (229)
Q Consensus 40 ~~~~r~~~kl~~i--~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~ 106 (229)
-|..|.-..+++- .+....+.++..++|||||.|..+..|++.+... ....+.+++|+|. + .
T Consensus 53 YYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~-----~~~~~Y~plDIS~~~L~~a~~~L~~~ 127 (319)
T TIGR03439 53 YYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQ-----KKSVDYYALDVSRSELQRTLAELPLG 127 (319)
T ss_pred cCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhc-----CCCceEEEEECCHHHHHHHHHhhhhc
Confidence 4677777666542 1112235677899999999999999888766310 0235789999995 1 1
Q ss_pred CCCCCeE--EecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHH-cccCCCEEEEe
Q psy1489 107 PIDGAVV--LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVT-YSKPGADCLIK 183 (229)
Q Consensus 107 ~~~~~~~--~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~-~LkpgG~~v~~ 183 (229)
..+.+.+ + .+|+++.- ..+..........+++.-++. +-+.+. ......|+.+.+ .|+|||.|++-
T Consensus 128 ~~p~l~v~~l-~gdy~~~l--~~l~~~~~~~~~r~~~flGSs----iGNf~~----~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 128 NFSHVRCAGL-LGTYDDGL--AWLKRPENRSRPTTILWLGSS----IGNFSR----PEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cCCCeEEEEE-EecHHHHH--hhcccccccCCccEEEEeCcc----ccCCCH----HHHHHHHHHHHHhhCCCCCEEEEe
Confidence 2345544 5 77777631 101110012345777764431 223333 224466777888 99999999986
Q ss_pred ec
Q psy1489 184 IW 185 (229)
Q Consensus 184 ~~ 185 (229)
+.
T Consensus 197 ~D 198 (319)
T TIGR03439 197 LD 198 (319)
T ss_pred cC
Confidence 54
No 203
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.95 E-value=7.7e-06 Score=63.78 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=43.9
Q ss_pred CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489 110 GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189 (229)
Q Consensus 110 ~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~ 189 (229)
+++++ ++|+.+.. +++++||+|++.... +.. .....+++++.++|||||.|++..+..++
T Consensus 27 ~i~~~-~~d~~~lp--------~~~~~fD~v~~~~~l-----~~~------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 86 (160)
T PLN02232 27 CIEWI-EGDAIDLP--------FDDCEFDAVTMGYGL-----RNV------VDRLRAMKEMYRVLKPGSRVSILDFNKSN 86 (160)
T ss_pred ceEEE-EechhhCC--------CCCCCeeEEEecchh-----hcC------CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 57888 88877632 557789999996532 211 23457899999999999999987776543
No 204
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.95 E-value=1.4e-05 Score=64.34 Aligned_cols=107 Identities=15% Similarity=0.046 Sum_probs=63.5
Q ss_pred cCCCC-eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCe-EEecCCCCChhHH
Q psy1489 59 LRPGL-KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAV-VLSKCDFTQPDIQ 125 (229)
Q Consensus 59 ~~~g~-~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~-~~~~~D~~~~~~~ 125 (229)
+++.. +||+||||||.-+.++++.+. .-+-.-.|..+- ...+++. -+ .-|++.....
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP---------~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~-~lDv~~~~w~ 91 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALP---------HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPL-ALDVSAPPWP 91 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCC---------CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCe-EeecCCCCCc
Confidence 34444 599999999999999999883 333333444331 0112211 12 3344443110
Q ss_pred HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
-.....+....||.|++.-.. |+.....++..+..+.++|++||.|++.-
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~l---------HI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINML---------HISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred cccccccCCCCcceeeehhHH---------HhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 000001234689999984332 44444566788999999999999998763
No 205
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.94 E-value=9.3e-05 Score=64.28 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=83.6
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCC-CeEEecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDG-AVVLSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~-~~~~~~~D~~~~~~~~ 126 (229)
..+|.+|||+=||-|.|+..+|... ...|+|+|++|- +.+.+ +..+ .+|..+.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g----------~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i-~gD~rev---- 250 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG----------RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPI-LGDAREV---- 250 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC----------CceEEEEecCHHHHHHHHHHHHhcCccceeeEE-eccHHHh----
Confidence 4569999999999999999999863 345999999981 12344 6677 8887662
Q ss_pred HHHHHhCC-CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCCh------HHHHHHHHh
Q psy1489 127 RLVTILKD-DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR------PQLEESITR 199 (229)
Q Consensus 127 ~i~~~~~~-~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~------~~~~~~l~~ 199 (229)
.+. ..+|-|+++.+.. ....+..|.+.+++||.+....+...+. ..+......
T Consensus 251 -----~~~~~~aDrIim~~p~~---------------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~ 310 (341)
T COG2520 251 -----APELGVADRIIMGLPKS---------------AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARK 310 (341)
T ss_pred -----hhccccCCEEEeCCCCc---------------chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhh
Confidence 112 6799999977541 1245666888899999988766654332 222333333
Q ss_pred hCCeeEEEcCCCCCCCCceEEEEec
Q psy1489 200 FYSQVKILKPPSSRSHSAELFLLGR 224 (229)
Q Consensus 200 ~F~~v~~~kp~~sr~~s~E~Y~v~~ 224 (229)
.-.++.+..--.-|+-+...|-||-
T Consensus 311 ~~~~~~v~~~r~VksysP~v~hv~v 335 (341)
T COG2520 311 GGYKVEVLKVRRVKSYSPGVYHVVV 335 (341)
T ss_pred ccCcceEEEEEEecccCCCeeEEEE
Confidence 2112333333334455555666653
No 206
>PRK04148 hypothetical protein; Provisional
Probab=97.89 E-value=4e-05 Score=57.81 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=63.0
Q ss_pred CCCeeEeecCCCCc-hHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489 61 PGLKVLDCGAAPGS-WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILKDD 135 (229)
Q Consensus 61 ~g~~VLDlGcGpG~-~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~~ 135 (229)
++.+|||+|||+|. .+..|++. | ..|+|+|+++.. .-..+.++ .+|+++++.. + -+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~-G----------~~ViaIDi~~~aV~~a~~~~~~~v-~dDlf~p~~~-----~--y~ 76 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES-G----------FDVIVIDINEKAVEKAKKLGLNAF-VDDLFNPNLE-----I--YK 76 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC-C----------CEEEEEECCHHHHHHHHHhCCeEE-ECcCCCCCHH-----H--Hh
Confidence 46899999999996 87777753 3 699999999821 11356788 9999987521 1 24
Q ss_pred CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189 (229)
Q Consensus 136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~ 189 (229)
.+|+|.+--+| . ++...+++.+.+ -|..++++.+.+..
T Consensus 77 ~a~liysirpp---------~----el~~~~~~la~~---~~~~~~i~~l~~e~ 114 (134)
T PRK04148 77 NAKLIYSIRPP---------R----DLQPFILELAKK---INVPLIIKPLSGEE 114 (134)
T ss_pred cCCEEEEeCCC---------H----HHHHHHHHHHHH---cCCCEEEEcCCCCC
Confidence 69999996554 1 223344444432 36778887776654
No 207
>KOG1663|consensus
Probab=97.86 E-value=8.6e-05 Score=60.51 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=68.0
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------CC----CCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------PI----DGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------~~----~~~~~~~~~D~~~~~~~~~i 128 (229)
...++||||.=||.-+...|..++ ++|+|+++|+++-. .. ..+.++ +++..+ ..+.+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp--------~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i-~g~a~e--sLd~l 141 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALP--------EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFI-EGPALE--SLDEL 141 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcC--------CCceEEEEecChHHHHHhHHHHHhccccceeeee-ecchhh--hHHHH
Confidence 458999999999999999888886 67899999998611 11 134555 554333 23333
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
....+.+.||.++.|.-- +. ...-+..+.++||+||.+++.
T Consensus 142 ~~~~~~~tfDfaFvDadK--------~n------Y~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 142 LADGESGTFDFAFVDADK--------DN------YSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HhcCCCCceeEEEEccch--------HH------HHHHHHHHHhhcccccEEEEe
Confidence 333456789999997621 11 124566788999999998864
No 208
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.86 E-value=0.00025 Score=57.77 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=62.5
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
+.+++|+|+|.|.=+..+|-.. |+.+|+=+|...- ..+++++++ .+.+.+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~---------p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~-~~RaE~~-------- 129 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF---------PDLKVTLLESLGKKIAFLREVKKELGLENVEIV-HGRAEEF-------- 129 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc---------cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEe-hhhHhhc--------
Confidence 5899999999999999988433 6778999998751 245778888 7755542
Q ss_pred HhCCCC-ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 131 ILKDDK-LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 131 ~~~~~~-~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
-.+.. ||+|+|-+.- ........+..++++||.++.
T Consensus 130 -~~~~~~~D~vtsRAva---------------~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 130 -GQEKKQYDVVTSRAVA---------------SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -ccccccCcEEEeehcc---------------chHHHHHHHHHhcccCCcchh
Confidence 22223 9999995421 123456778899999998764
No 209
>KOG1661|consensus
Probab=97.82 E-value=4.9e-05 Score=61.08 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=62.4
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCc-EEEEEeCCC-CC-----C---------------CCCCeEEec
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKG-LVLSVDKLP-IY-----P---------------IDGAVVLSK 116 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~-~v~gvD~~~-~~-----~---------------~~~~~~~~~ 116 (229)
++||.+.||+|.|+|.++..++..++ +.+ .+.|||.-+ +. . ...+.++ .
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg--------~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv-v 150 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVG--------ATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV-V 150 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhc--------CCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE-e
Confidence 67999999999999999999998887 334 348998765 10 0 1134445 5
Q ss_pred CCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
+|..... -+..+||.|.+.++- ....+.....|++||.+++-+-
T Consensus 151 GDgr~g~--------~e~a~YDaIhvGAaa-----------------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 151 GDGRKGY--------AEQAPYDAIHVGAAA-----------------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CCccccC--------CccCCcceEEEccCc-----------------cccHHHHHHhhccCCeEEEeec
Confidence 5554421 224679999986532 1223446677999999987554
No 210
>PRK00536 speE spermidine synthase; Provisional
Probab=97.81 E-value=0.00015 Score=60.98 Aligned_cols=109 Identities=15% Similarity=0.020 Sum_probs=72.2
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C--------------CCCCCeEEecCCCCChhH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y--------------PIDGAVVLSKCDFTQPDI 124 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~--------------~~~~~~~~~~~D~~~~~~ 124 (229)
+..++||-+|-|-|+.+..++++ + .+|+-||+++. . .-|+++++ .
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh----------~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~-~-------- 130 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY----------D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHA-K-------- 130 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc----------C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEe-e--------
Confidence 34589999999999999998876 3 39999999872 1 11233333 1
Q ss_pred HHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC----CCChHHHHHHHHhh
Q psy1489 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD----GRNRPQLEESITRF 200 (229)
Q Consensus 125 ~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~----~~~~~~~~~~l~~~ 200 (229)
.+.+ ...++||+|+.|..+. ...++.+.+.|+|||.+++..-+ ......+...++..
T Consensus 131 --~~~~-~~~~~fDVIIvDs~~~----------------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~ 191 (262)
T PRK00536 131 --QLLD-LDIKKYDLIICLQEPD----------------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDF 191 (262)
T ss_pred --hhhh-ccCCcCCEEEEcCCCC----------------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhh
Confidence 0111 1236899999996531 23456689999999999985422 12245566777777
Q ss_pred CCeeEEE
Q psy1489 201 YSQVKIL 207 (229)
Q Consensus 201 F~~v~~~ 207 (229)
|..|..+
T Consensus 192 F~~v~~y 198 (262)
T PRK00536 192 FSIAMPF 198 (262)
T ss_pred CCceEEE
Confidence 8766544
No 211
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.80 E-value=0.00039 Score=59.10 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=74.2
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C-------C-------CCCCeEEecCCCCChhHHHH
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y-------P-------IDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~-------~-------~~~~~~~~~~D~~~~~~~~~ 127 (229)
.+||-+|-|.|+++..+++.. +..+++.||+++. . + -+++.++ .+|..+ .
T Consensus 78 k~VLiiGgGdG~tlRevlkh~---------~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~-i~Dg~~-----~ 142 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL---------PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII-IDDGVE-----F 142 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC---------CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEE-eccHHH-----H
Confidence 599999999999999999875 4568999999961 0 1 1445555 454333 1
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC---C-CChHHHHHHHHhhCCe
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD---G-RNRPQLEESITRFYSQ 203 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~---~-~~~~~~~~~l~~~F~~ 203 (229)
+.+ . ..+||+|+.|..... |.. +.+ .....++.+.+.|+++|.++...-+ . .........+...|..
T Consensus 143 v~~-~-~~~fDvIi~D~tdp~-gp~--~~L----ft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~ 213 (282)
T COG0421 143 LRD-C-EEKFDVIIVDSTDPV-GPA--EAL----FTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSI 213 (282)
T ss_pred HHh-C-CCcCCEEEEcCCCCC-Ccc--ccc----CCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccc
Confidence 222 2 338999999986421 210 000 1236778899999999999986211 1 1123344445555654
Q ss_pred eE
Q psy1489 204 VK 205 (229)
Q Consensus 204 v~ 205 (229)
+.
T Consensus 214 ~~ 215 (282)
T COG0421 214 VP 215 (282)
T ss_pred cc
Confidence 43
No 212
>KOG3420|consensus
Probab=97.80 E-value=2.2e-05 Score=59.55 Aligned_cols=67 Identities=24% Similarity=0.244 Sum_probs=48.5
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------CCC----CCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------PID----GAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~~~----~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.|+.++|||||.|-++...+- . ..-.|+|+|+.|.. +.+ ++.++ ++|+.++.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~---------~~e~vlGfDIdpeALEIf~rNaeEfEvqidlL-qcdildle------- 109 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-P---------KNESVLGFDIDPEALEIFTRNAEEFEVQIDLL-QCDILDLE------- 109 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-C---------CCceEEeeecCHHHHHHHhhchHHhhhhhhee-eeeccchh-------
Confidence 589999999999999855442 2 34589999999721 111 34677 88888743
Q ss_pred HhCCCCccEEEeCCCC
Q psy1489 131 ILKDDKLDVVLSDMAP 146 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~ 146 (229)
+..+.||.++.|.++
T Consensus 110 -~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 110 -LKGGIFDTAVINPPF 124 (185)
T ss_pred -ccCCeEeeEEecCCC
Confidence 345789999999876
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.80 E-value=4.3e-05 Score=65.77 Aligned_cols=132 Identities=17% Similarity=0.253 Sum_probs=68.1
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C----------CC--CCCeEEecCCCCChhHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y----------PI--DGAVVLSKCDFTQPDIQ 125 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~----------~~--~~~~~~~~~D~~~~~~~ 125 (229)
..++.+|+|-+||+|++...+.+++... ........++|+|+++. . .. ....+. .+|......
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~--~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~-~~d~l~~~~- 119 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEK--RNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINII-QGDSLENDK- 119 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTC--HHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEE-ES-TTTSHS-
T ss_pred ccccceeechhhhHHHHHHHHHHhhccc--ccccccceeEeecCcHHHHHHHHhhhhhhcccccccccc-ccccccccc-
Confidence 4567899999999999998887754100 00003468999999861 0 11 122355 677554221
Q ss_pred HHHHHHhCCCCccEEEeCCCCCCCCCCcccH-----HH-----HHHHHHHHHHHHHHcccCCCEEEEeecC-----CCCh
Q psy1489 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDH-----DL-----ITQLAIAVIRFAVTYSKPGADCLIKIWD-----GRNR 190 (229)
Q Consensus 126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~-----~~-----~~~~~~~~l~~~~~~LkpgG~~v~~~~~-----~~~~ 190 (229)
......||+|+++++........... +. ....-...+..+.+.|++||++++-+.. ....
T Consensus 120 -----~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~ 194 (311)
T PF02384_consen 120 -----FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSE 194 (311)
T ss_dssp -----CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHH
T ss_pred -----cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchH
Confidence 01246899999998764331100000 00 0001113667789999999998765532 2223
Q ss_pred HHHHHHHHh
Q psy1489 191 PQLEESITR 199 (229)
Q Consensus 191 ~~~~~~l~~ 199 (229)
..+++.|-.
T Consensus 195 ~~iR~~ll~ 203 (311)
T PF02384_consen 195 KKIRKYLLE 203 (311)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 556655533
No 214
>KOG2915|consensus
Probab=97.80 E-value=0.00011 Score=61.42 Aligned_cols=72 Identities=29% Similarity=0.435 Sum_probs=55.9
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CC-CCCeEEecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PI-DGAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~-~~~~~~~~~D~~~~~~~~ 126 (229)
++||.+||+-|.|+|+++-++++.++ |.|+++..|..+.. .+ .++++. ..|+......
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~--------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~-hrDVc~~GF~- 172 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVA--------PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVT-HRDVCGSGFL- 172 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhC--------cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEE-EeecccCCcc-
Confidence 57999999999999999999999998 88999999997521 12 256666 6776653311
Q ss_pred HHHHHhCCCCccEEEeCCC
Q psy1489 127 RLVTILKDDKLDVVLSDMA 145 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~ 145 (229)
..+..+|.|+.|++
T Consensus 173 -----~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 173 -----IKSLKADAVFLDLP 186 (314)
T ss_pred -----ccccccceEEEcCC
Confidence 22678999999986
No 215
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.77 E-value=0.00013 Score=64.05 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=47.8
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
+.+|||||||+|.++..+++.. .+|+|||+++ + ..+.++.++ .+|+.+.- .....
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~-----------~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~-~~d~~~~~--~~~~~ 263 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF-----------RRVLATEIAKPSVNAAQYNIAANNIDNVQII-RMSAEEFT--QAMNG 263 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC-----------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEE-EcCHHHHH--HHHhh
Confidence 3579999999999999888764 4899999996 2 134467788 88875421 11000
Q ss_pred --Hh---C-----CCCccEEEeCCC
Q psy1489 131 --IL---K-----DDKLDVVLSDMA 145 (229)
Q Consensus 131 --~~---~-----~~~~D~V~sd~~ 145 (229)
.+ . ...||+|+.|++
T Consensus 264 ~~~~~~~~~~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 264 VREFRRLKGIDLKSYNCSTIFVDPP 288 (353)
T ss_pred ccccccccccccccCCCCEEEECCC
Confidence 01 1 124899999986
No 216
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.77 E-value=3.9e-05 Score=59.85 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=57.1
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------C-CCCCeEEecCCCCChhHHHHHHH
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------P-IDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~-~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
..|+|++||-|+-+..+|+.. .+|+|||+++.. . ..+++++ .+|+.+. ..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~-----------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i-~gD~~~~------~~ 62 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF-----------DRVIAIDIDPERLECAKHNAEVYGVADNIDFI-CGDFFEL------LK 62 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT------------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEE-ES-HHHH------GG
T ss_pred CEEEEeccCcCHHHHHHHHhC-----------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEE-eCCHHHH------Hh
Confidence 369999999999999999874 489999999721 1 2368899 9997762 11
Q ss_pred HhCCCC-ccEEEeCCC---CCCCCCCcccHHHHHH--HHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489 131 ILKDDK-LDVVLSDMA---PNATGMREMDHDLITQ--LAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200 (229)
Q Consensus 131 ~~~~~~-~D~V~sd~~---~~~~g~~~~d~~~~~~--~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~ 200 (229)
.+.... +|+|+.+++ |+.......|-...+. ....+++.+.++ ...+++......+..++.+.....
T Consensus 63 ~~~~~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~---t~nv~l~LPRn~dl~ql~~~~~~l 135 (163)
T PF09445_consen 63 RLKSNKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKI---TPNVVLFLPRNSDLNQLSQLTREL 135 (163)
T ss_dssp GB------SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH----S-EEEEEETTB-HHHHHHT----
T ss_pred hccccccccEEEECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhh---CCCEEEEeCCCCCHHHHHHHhccc
Confidence 122222 899999875 1111111111100000 112333333322 245666666666777777665443
No 217
>KOG0820|consensus
Probab=97.76 E-value=0.00011 Score=61.41 Aligned_cols=76 Identities=22% Similarity=0.272 Sum_probs=56.9
Q ss_pred HhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC--------CC---CCCeEEecC
Q psy1489 50 LEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY--------PI---DGAVVLSKC 117 (229)
Q Consensus 50 ~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~--------~~---~~~~~~~~~ 117 (229)
.+|.++.. +++++.||++|.|||.++..+.+.. .+|+|+++++ |. .. ...+++ .+
T Consensus 48 ~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~-----------kkVvA~E~Dprmvael~krv~gtp~~~kLqV~-~g 114 (315)
T KOG0820|consen 48 DQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG-----------KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL-HG 114 (315)
T ss_pred HHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc-----------CeEEEEecCcHHHHHHHHHhcCCCccceeeEE-ec
Confidence 34444444 5789999999999999999999863 5999999998 42 11 246778 89
Q ss_pred CCCChhHHHHHHHHhCCCCccEEEeCCCCCC
Q psy1489 118 DFTQPDIQDRLVTILKDDKLDVVLSDMAPNA 148 (229)
Q Consensus 118 D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~ 148 (229)
|+... +.-.||.+++|.+++.
T Consensus 115 D~lK~----------d~P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 115 DFLKT----------DLPRFDGCVSNLPYQI 135 (315)
T ss_pred ccccC----------CCcccceeeccCCccc
Confidence 88763 2347999999887643
No 218
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.76 E-value=3.5e-05 Score=67.91 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=48.1
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
+.+||||+||+|.++..+++.. .+|+|||+++ + ..+.++.++ .+|+.+. ...+..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~-----------~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~-~~d~~~~--l~~~~~ 272 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF-----------RRVLATEISKPSVAAAQYNIAANGIDNVQII-RMSAEEF--TQAMNG 272 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC-----------CEEEEEECCHHHHHHHHHHHHHhCCCcEEEE-ECCHHHH--HHHHhh
Confidence 3579999999999999888753 4899999996 2 123467788 8887542 111111
Q ss_pred Hh----------CCCCccEEEeCCC
Q psy1489 131 IL----------KDDKLDVVLSDMA 145 (229)
Q Consensus 131 ~~----------~~~~~D~V~sd~~ 145 (229)
.. ....||+|+.|++
T Consensus 273 ~~~~~~~~~~~~~~~~~D~v~lDPP 297 (362)
T PRK05031 273 VREFNRLKGIDLKSYNFSTIFVDPP 297 (362)
T ss_pred cccccccccccccCCCCCEEEECCC
Confidence 00 0225899999986
No 219
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.75 E-value=7.7e-05 Score=62.30 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=78.7
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------------CCCCCeEEecCCCCChhHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------------PIDGAVVLSKCDFTQPDIQ 125 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------------~~~~~~~~~~~D~~~~~~~ 125 (229)
+..+||-||-|.|+.+..+++.. +..+|+.||+++. . .-++++++ .+|...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~---------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~-~~Dg~~---- 141 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP---------PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRII-IGDGRK---- 141 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST---------T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEE-ESTHHH----
T ss_pred CcCceEEEcCCChhhhhhhhhcC---------CcceEEEEecChHHHHHHHHhchhhccccCCCceEEE-EhhhHH----
Confidence 56899999999999988887653 3468999999972 0 12467777 676433
Q ss_pred HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC----ChHHHHHHHHhhC
Q psy1489 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR----NRPQLEESITRFY 201 (229)
Q Consensus 126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~----~~~~~~~~l~~~F 201 (229)
.+.+ ..+.+||+|+.|... ..+... . -.....++.+.+.|+|||.+++..-... ....+...++..|
T Consensus 142 -~l~~-~~~~~yDvIi~D~~d-p~~~~~--~----l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F 212 (246)
T PF01564_consen 142 -FLKE-TQEEKYDVIIVDLTD-PDGPAP--N----LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVF 212 (246)
T ss_dssp -HHHT-SSST-EEEEEEESSS-TTSCGG--G----GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTS
T ss_pred -HHHh-ccCCcccEEEEeCCC-CCCCcc--c----ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhC
Confidence 1222 222389999999864 111111 1 1124677889999999999998653222 2344556777788
Q ss_pred CeeEEEc
Q psy1489 202 SQVKILK 208 (229)
Q Consensus 202 ~~v~~~k 208 (229)
..|..+.
T Consensus 213 ~~v~~~~ 219 (246)
T PF01564_consen 213 PQVKPYT 219 (246)
T ss_dssp SEEEEEE
T ss_pred CceEEEE
Confidence 8666543
No 220
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00011 Score=61.57 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=54.2
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
+.+++.||++|+|.|++|..|+++. .+|+++++++ + ....+++++ .+|+...+....
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~-----------~~v~aiEiD~~l~~~L~~~~~~~~n~~vi-~~DaLk~d~~~l-- 93 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERA-----------ARVTAIEIDRRLAEVLKERFAPYDNLTVI-NGDALKFDFPSL-- 93 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhc-----------CeEEEEEeCHHHHHHHHHhcccccceEEE-eCchhcCcchhh--
Confidence 3458999999999999999999985 4899999986 2 124578899 999887542211
Q ss_pred HHhCCCCccEEEeCCCCC
Q psy1489 130 TILKDDKLDVVLSDMAPN 147 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~ 147 (229)
. .++.|++|.+-+
T Consensus 94 --~---~~~~vVaNlPY~ 106 (259)
T COG0030 94 --A---QPYKVVANLPYN 106 (259)
T ss_pred --c---CCCEEEEcCCCc
Confidence 1 689999998754
No 221
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.73 E-value=5.9e-05 Score=59.69 Aligned_cols=88 Identities=25% Similarity=0.305 Sum_probs=65.3
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------C-----CCCCeEEecCCCCChhHHHHHHHH
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------P-----IDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~-----~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
+.+.|||+|+|.++..+++.. .+|++++.+|.. . ..+++++ .+|..+.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A-----------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv-~gDA~~y~-------- 93 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA-----------ERVIAIEKDPKRARLAEENLHVPGDVNWEVV-VGDARDYD-------- 93 (252)
T ss_pred hceeeccCCcchHHHHHHhhh-----------ceEEEEecCcHHHHHhhhcCCCCCCcceEEE-eccccccc--------
Confidence 789999999999999988763 599999999821 1 2357778 88887743
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v 181 (229)
+ +..|+|+|-| .|.....+-+-.++..+..+||..++++
T Consensus 94 f--e~ADvvicEm---------lDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 94 F--ENADVVICEM---------LDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred c--cccceeHHHH---------hhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 2 4689999965 3343333444467788888999999986
No 222
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.72 E-value=0.00025 Score=57.60 Aligned_cols=100 Identities=22% Similarity=0.273 Sum_probs=55.8
Q ss_pred hcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------------------CCCCCeEE
Q psy1489 55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------------------PIDGAVVL 114 (229)
Q Consensus 55 ~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------------------~~~~~~~~ 114 (229)
..+ +.+++.++|||||.|.....++...+ -.+++||++.+.. ....+.+.
T Consensus 37 ~~~-l~~~dvF~DlGSG~G~~v~~aal~~~---------~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~ 106 (205)
T PF08123_consen 37 ELN-LTPDDVFYDLGSGVGNVVFQAALQTG---------CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI 106 (205)
T ss_dssp HTT---TT-EEEEES-TTSHHHHHHHHHH-----------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE
T ss_pred HhC-CCCCCEEEECCCCCCHHHHHHHHHcC---------CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee
Confidence 444 56789999999999999887776653 3469999998610 12246677
Q ss_pred ecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 115 SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 115 ~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
++|+.+.+....+ + ...|+|+++... .+... ...|.....-||+|-++|.
T Consensus 107 -~gdfl~~~~~~~~---~--s~AdvVf~Nn~~-------F~~~l-----~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 107 -HGDFLDPDFVKDI---W--SDADVVFVNNTC-------FDPDL-----NLALAELLLELKPGARIIS 156 (205)
T ss_dssp -CS-TTTHHHHHHH---G--HC-SEEEE--TT-------T-HHH-----HHHHHHHHTTS-TT-EEEE
T ss_pred -ccCccccHhHhhh---h--cCCCEEEEeccc-------cCHHH-----HHHHHHHHhcCCCCCEEEE
Confidence 9999987644433 2 247999996532 22221 2334556667888877664
No 223
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.71 E-value=2.2e-05 Score=56.57 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=40.3
Q ss_pred EeecCCCCchHHHHHHHHhccCCCCCCCC--cEEEEEeCCCC---C-------C-CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 66 LDCGAAPGSWSQVAVKLVNSHGYDSKQPK--GLVLSVDKLPI---Y-------P-IDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 66 LDlGcGpG~~s~~la~~~~~~~~~~~~~~--~~v~gvD~~~~---~-------~-~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
|++|+..|..+..+++.+. +. ++++++|..+. . . ..+++++ +++..+ ... . +
T Consensus 1 lEiG~~~G~st~~l~~~~~--------~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~--~l~---~-~ 65 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALR--------DNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFI-QGDSPD--FLP---S-L 65 (106)
T ss_dssp ----------------------------------EEEESS------------GGG-BTEEEE-ES-THH--HHH---H-H
T ss_pred Ccccccccccccccccccc--------ccccCCEEEEECCCcccccchhhhhcCCCCeEEEE-EcCcHH--HHH---H-c
Confidence 6899999999988887664 23 38999999872 1 0 1257777 787643 222 2 2
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
++.++|+|+.|+... .+.....+..+...|+|||.+++.
T Consensus 66 ~~~~~dli~iDg~H~------------~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 66 PDGPIDLIFIDGDHS------------YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp HH--EEEEEEES---------------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCEEEEEECCCCC------------HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 256899999998421 133456788899999999988763
No 224
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.70 E-value=3.6e-05 Score=61.40 Aligned_cols=90 Identities=21% Similarity=0.227 Sum_probs=64.0
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+++|+|+|.|.=+..++-.. |+.+++-+|...- ..+++++++ .+.+.+ ..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~---------p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~-~~R~E~---------~~ 111 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR---------PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVI-NGRAEE---------PE 111 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH----------TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE-ES-HHH---------TT
T ss_pred eEEecCCCCCChhHHHHHhC---------CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE-Eeeecc---------cc
Confidence 89999999999999988765 7789999998851 145788888 665443 13
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~ 189 (229)
....||+|++-+.- . ....+..+..+|++||.+++ +.++.
T Consensus 112 ~~~~fd~v~aRAv~---------~------l~~l~~~~~~~l~~~G~~l~--~KG~~ 151 (184)
T PF02527_consen 112 YRESFDVVTARAVA---------P------LDKLLELARPLLKPGGRLLA--YKGPD 151 (184)
T ss_dssp TTT-EEEEEEESSS---------S------HHHHHHHHGGGEEEEEEEEE--EESS-
T ss_pred cCCCccEEEeehhc---------C------HHHHHHHHHHhcCCCCEEEE--EcCCC
Confidence 46789999996531 1 23567779999999999875 44443
No 225
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.62 E-value=0.00061 Score=55.26 Aligned_cols=127 Identities=20% Similarity=0.198 Sum_probs=75.7
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEe
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~s 142 (229)
-++||+||-........... -.|+.||+++ .-+++ . +.|+++.... . .+++.||+|.+
T Consensus 53 lrlLEVGals~~N~~s~~~~------------fdvt~IDLns--~~~~I--~-qqDFm~rplp----~-~~~e~FdvIs~ 110 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW------------FDVTRIDLNS--QHPGI--L-QQDFMERPLP----K-NESEKFDVISL 110 (219)
T ss_pred ceEEeecccCCCCcccccCc------------eeeEEeecCC--CCCCc--e-eeccccCCCC----C-CcccceeEEEE
Confidence 69999999855433222222 3699999987 23333 3 7787773211 0 23678999999
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCE-----EEEeecC-------CCChHHHHHHHHhh-CCeeEEEcC
Q psy1489 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGAD-----CLIKIWD-------GRNRPQLEESITRF-YSQVKILKP 209 (229)
Q Consensus 143 d~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~-----~v~~~~~-------~~~~~~~~~~l~~~-F~~v~~~kp 209 (229)
.+..+..+ ++ ....+.+..+.++|+|+|. +.+.... .-....+.+.|... |..++..
T Consensus 111 SLVLNfVP----~p----~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~-- 180 (219)
T PF11968_consen 111 SLVLNFVP----DP----KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK-- 180 (219)
T ss_pred EEEEeeCC----CH----HHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE--
Confidence 77543321 12 1234567779999999999 6653321 11345666777776 7666553
Q ss_pred CCCCCCCceEEEEecc
Q psy1489 210 PSSRSHSAELFLLGRG 225 (229)
Q Consensus 210 ~~sr~~s~E~Y~v~~~ 225 (229)
....=+|++++.
T Consensus 181 ----~~~Kl~y~l~r~ 192 (219)
T PF11968_consen 181 ----KSKKLAYWLFRK 192 (219)
T ss_pred ----ecCeEEEEEEee
Confidence 334445666553
No 226
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.55 E-value=0.00029 Score=56.88 Aligned_cols=107 Identities=19% Similarity=0.260 Sum_probs=62.3
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC-------C-CCCCeEEecCCCCChhHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY-------P-IDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~-------~-~~~~~~~~~~D~~~~~~~~~i 128 (229)
++| +.|+++|..-||-+...|..+... ++.++|+|||+.. .. + .++++++ +||..++++...+
T Consensus 31 ~kP-d~IIE~Gi~~GGSli~~A~ml~~~-----~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i-~Gds~d~~~~~~v 103 (206)
T PF04989_consen 31 LKP-DLIIETGIAHGGSLIFWASMLELL-----GGKGKVIGIDIDIRPHNRKAIESHPMSPRITFI-QGDSIDPEIVDQV 103 (206)
T ss_dssp H---SEEEEE--TTSHHHHHHHHHHHHT-----T---EEEEEES-GTT--S-GGGG----TTEEEE-ES-SSSTHHHHTS
T ss_pred hCC-CeEEEEecCCCchHHHHHHHHHHh-----CCCceEEEEeCCcchhchHHHhhccccCceEEE-ECCCCCHHHHHHH
Confidence 344 799999999999887776544210 1568999999942 11 1 1579999 9999998877666
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
..........+|+-|... ..+| +...|.....++.+|+.+|+.-
T Consensus 104 ~~~~~~~~~vlVilDs~H------~~~h------vl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 104 RELASPPHPVLVILDSSH------THEH------VLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp GSS----SSEEEEESS----------SS------HHHHHHHHHHT--TT-EEEETS
T ss_pred HHhhccCCceEEEECCCc------cHHH------HHHHHHHhCccCCCCCEEEEEe
Confidence 554444567799998742 1122 4466777889999999998753
No 227
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.53 E-value=0.00022 Score=63.06 Aligned_cols=90 Identities=18% Similarity=0.121 Sum_probs=63.1
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
-+|||+.||+|..++.++.+.+ +..+|+++|+++- ..+.+++++ ++|.... +..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~--------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~-~~Da~~~-----l~~- 110 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIE--------GVREVFANDINPKAVESIKNNVEYNSVENIEVP-NEDAANV-----LRY- 110 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCC--------CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-chhHHHH-----HHH-
Confidence 5899999999999999988752 2358999999971 122345666 6664431 221
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
. ...||+|..|+ + |. ....+..+.+.+++||.+.+.
T Consensus 111 ~-~~~fDvIdlDP-f---Gs-----------~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 111 R-NRKFHVIDIDP-F---GT-----------PAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred h-CCCCCEEEeCC-C---CC-----------cHHHHHHHHHhcccCCEEEEE
Confidence 1 35799999987 3 21 124566788889999998876
No 228
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.53 E-value=5.8e-05 Score=67.95 Aligned_cols=98 Identities=11% Similarity=-0.016 Sum_probs=53.8
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-CCCeEEecCCCCChhHHHH---HHHHhCCCCcc
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-DGAVVLSKCDFTQPDIQDR---LVTILKDDKLD 138 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-~~~~~~~~~D~~~~~~~~~---i~~~~~~~~~D 138 (229)
..+||+|||.|.|+.+|.++. |+.+-+.+-..- ..+++. ..-- -+..... -+-.++++.||
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~-------------V~t~s~a~~d~~~~qvqfa-leRG-vpa~~~~~~s~rLPfp~~~fD 183 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERN-------------VTTMSFAPNDEHEAQVQFA-LERG-VPAMIGVLGSQRLPFPSNAFD 183 (506)
T ss_pred EEEEeccceeehhHHHHhhCC-------------ceEEEcccccCCchhhhhh-hhcC-cchhhhhhccccccCCccchh
Confidence 468999999999999988762 333333221000 111111 0000 0000000 01126789999
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 139 ~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
+|.|.-+.. ..... . ...|-++-|+|||||.|+....
T Consensus 184 mvHcsrc~i----~W~~~----~--g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 184 MVHCSRCLI----PWHPN----D--GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhhcccccc----cchhc----c--cceeehhhhhhccCceEEecCC
Confidence 999965431 11111 0 1356678999999999987654
No 229
>KOG1331|consensus
Probab=97.52 E-value=0.00034 Score=58.76 Aligned_cols=99 Identities=21% Similarity=0.335 Sum_probs=67.9
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC---CCCC-eEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP---IDGA-VVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~---~~~~-~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
...|..++|.|||-|-.... . |.+.++|.|++. +.. ..+. ... .+|+.. ....
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~--------p~~~~ig~D~c~~l~~~ak~~~~~~~~-~ad~l~--------~p~~ 100 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----N--------PLCLIIGCDLCTGLLGGAKRSGGDNVC-RADALK--------LPFR 100 (293)
T ss_pred cCCcceeeecccCCcccCcC-----C--------CcceeeecchhhhhccccccCCCceee-hhhhhc--------CCCC
Confidence 44689999999999965322 1 567899999986 111 1122 233 444443 2355
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~ 187 (229)
+..||.+++-. ...|+........++++..+.|+|||...+.+|..
T Consensus 101 ~~s~d~~lsia--------vihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 101 EESFDAALSIA--------VIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred CCccccchhhh--------hhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 77899988843 23455556667789999999999999998888764
No 230
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.34 E-value=0.002 Score=59.63 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=30.1
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
.+.+|||.|||+|++...++.+....... ....-.++|+|+++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~-~~~~~~i~g~DId~ 73 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYF-KEVELNIYFADIDK 73 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCc-ccceeeeeeechhH
Confidence 45699999999999999988876311100 00124789999986
No 231
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.34 E-value=0.00066 Score=56.51 Aligned_cols=85 Identities=31% Similarity=0.384 Sum_probs=59.5
Q ss_pred CccchhhhhhHhhhhhc-------CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC----
Q psy1489 40 NYRCRSAFKLLEIDSKI-------KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI---- 108 (229)
Q Consensus 40 ~~~~r~~~kl~~i~~~~-------~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~---- 108 (229)
...||+..||.|.--.| .-+.+|+..+|||+.||+|+-.|.++. -.|++||--+|.+.
T Consensus 183 dAPSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~-----------m~V~aVDng~ma~sL~dt 251 (358)
T COG2933 183 DAPSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRN-----------MRVYAVDNGPMAQSLMDT 251 (358)
T ss_pred CCCchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcc-----------eEEEEeccchhhhhhhcc
Confidence 35788888888742222 124579999999999999999988763 59999999887531
Q ss_pred CCCeEEecCCCCChhHHHHHHHHhC-CCCccEEEeCCC
Q psy1489 109 DGAVVLSKCDFTQPDIQDRLVTILK-DDKLDVVLSDMA 145 (229)
Q Consensus 109 ~~~~~~~~~D~~~~~~~~~i~~~~~-~~~~D~V~sd~~ 145 (229)
..++.. ..|-.. +-+ ....|-.+|||.
T Consensus 252 g~v~h~-r~DGfk---------~~P~r~~idWmVCDmV 279 (358)
T COG2933 252 GQVTHL-REDGFK---------FRPTRSNIDWMVCDMV 279 (358)
T ss_pred cceeee-eccCcc---------cccCCCCCceEEeehh
Confidence 234444 444333 112 567999999995
No 232
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00032 Score=63.11 Aligned_cols=70 Identities=27% Similarity=0.220 Sum_probs=52.2
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~ 127 (229)
..++++|+|+=||.|.|++.+|++. .+|+|+|+++- ..+.++.+. .++..+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~~-----------~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~-~~~ae~~----- 353 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKRV-----------KKVHGVEISPEAVEAAQENAAANGIDNVEFI-AGDAEEF----- 353 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhcccC-----------CEEEEEecCHHHHHHHHHHHHHcCCCcEEEE-eCCHHHH-----
Confidence 3467899999999999999999764 59999999961 235567777 7765542
Q ss_pred HHHHhCCCCccEEEeCCC
Q psy1489 128 LVTILKDDKLDVVLSDMA 145 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~ 145 (229)
+.....+..+|.|+.|++
T Consensus 354 ~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred hhhccccCCCCEEEECCC
Confidence 222223568999999985
No 233
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.30 E-value=0.00037 Score=55.52 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=33.9
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
+++|++|+|+=.|.|.|+..++..++ +.|.|+++=..+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vg--------p~G~Vy~~~p~e 83 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVG--------PKGKVYAYVPAE 83 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcC--------CceeEEEecchh
Confidence 68999999999999999999999998 888999885544
No 234
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.25 E-value=0.00079 Score=57.40 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=28.4
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.+.||+|+|-... .+...+....++....+.|+|||.|++-
T Consensus 221 ~~~fD~I~cRNvl---------iyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 221 PGPFDAIFCRNVM---------IYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred CCCcceeeHhhHH---------hcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4689999993221 1111234568899999999999988763
No 235
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.22 E-value=0.0032 Score=60.29 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=64.8
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhc-----cCC--------------------C--------CCCCCcEEEEEeCCC-C
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNS-----HGY--------------------D--------SKQPKGLVLSVDKLP-I 105 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~-----~~~--------------------~--------~~~~~~~v~gvD~~~-~ 105 (229)
+++..++|-+||+|.+.+.++..... .+. + ......+++|+|+++ +
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 46789999999999999887764210 000 0 001234799999997 2
Q ss_pred ----------CCCC-CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcc
Q psy1489 106 ----------YPID-GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS 174 (229)
Q Consensus 106 ----------~~~~-~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~L 174 (229)
..+. .+.+. ++|+.+.. .....+.+|+|++|++. |.+..+.....++- ..+....+..
T Consensus 269 v~~A~~N~~~~g~~~~i~~~-~~D~~~~~------~~~~~~~~d~IvtNPPY---g~r~~~~~~l~~lY-~~lg~~lk~~ 337 (702)
T PRK11783 269 IQAARKNARRAGVAELITFE-VKDVADLK------NPLPKGPTGLVISNPPY---GERLGEEPALIALY-SQLGRRLKQQ 337 (702)
T ss_pred HHHHHHHHHHcCCCcceEEE-eCChhhcc------cccccCCCCEEEECCCC---cCccCchHHHHHHH-HHHHHHHHHh
Confidence 1222 36677 88877632 11223579999999865 33322222222222 2234445555
Q ss_pred cCCCEEEE
Q psy1489 175 KPGADCLI 182 (229)
Q Consensus 175 kpgG~~v~ 182 (229)
.+|+.+++
T Consensus 338 ~~g~~~~l 345 (702)
T PRK11783 338 FGGWNAAL 345 (702)
T ss_pred CCCCeEEE
Confidence 58888765
No 236
>KOG2187|consensus
Probab=97.13 E-value=0.00079 Score=60.82 Aligned_cols=55 Identities=18% Similarity=0.139 Sum_probs=41.5
Q ss_pred hcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCC
Q psy1489 55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQ 121 (229)
Q Consensus 55 ~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~ 121 (229)
....+..+..+||++||||.++..+++.. .+|+||++++- ..+.+++|+ .+-..+
T Consensus 377 e~~~l~~~k~llDv~CGTG~iglala~~~-----------~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi-~gqaE~ 442 (534)
T KOG2187|consen 377 EWAGLPADKTLLDVCCGTGTIGLALARGV-----------KRVIGVEISPDAVEDAEKNAQINGISNATFI-VGQAED 442 (534)
T ss_pred HHhCCCCCcEEEEEeecCCceehhhhccc-----------cceeeeecChhhcchhhhcchhcCccceeee-ecchhh
Confidence 33345677899999999999999999865 59999999972 124577888 773333
No 237
>PRK11524 putative methyltransferase; Provisional
Probab=97.13 E-value=0.0067 Score=51.71 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=52.7
Q ss_pred eEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCC-----CCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 112 VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATG-----MREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 112 ~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g-----~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
.++ ++|..+ +...+++++||+|++|++..... ....+...........+.++.++|||||.|++.. .
T Consensus 10 ~i~-~gD~~~------~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~-~ 81 (284)
T PRK11524 10 TII-HGDALT------ELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN-S 81 (284)
T ss_pred EEE-eccHHH------HHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc-C
Confidence 455 676554 22346788999999998753211 0111122334456788999999999999998742 2
Q ss_pred CCChHHHHHHHHhhC---CeeEEEcCC
Q psy1489 187 GRNRPQLEESITRFY---SQVKILKPP 210 (229)
Q Consensus 187 ~~~~~~~~~~l~~~F---~~v~~~kp~ 210 (229)
......+...++..| ..+.+.|+.
T Consensus 82 ~~~~~~~~~~~~~~f~~~~~iiW~k~~ 108 (284)
T PRK11524 82 TENMPFIDLYCRKLFTIKSRIVWSYDS 108 (284)
T ss_pred chhhhHHHHHHhcCcceEEEEEEEeCC
Confidence 222222223333323 445566653
No 238
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.12 E-value=0.00025 Score=62.36 Aligned_cols=71 Identities=27% Similarity=0.221 Sum_probs=40.8
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChh-HHH----
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPD-IQD---- 126 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~-~~~---- 126 (229)
..||||.||.|.++..+|... .+|+|||+++ + ..+.+++++ .++..+.. ...
T Consensus 198 ~~vlDlycG~G~fsl~la~~~-----------~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~-~~~~~~~~~~~~~~r~ 265 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA-----------KKVIGVEIVEEAVEDARENAKLNGIDNVEFI-RGDAEDFAKALAKARE 265 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS-----------SEEEEEES-HHHHHHHHHHHHHTT--SEEEE-E--SHHCCCHHCCS-G
T ss_pred CcEEEEeecCCHHHHHHHhhC-----------CeEEEeeCCHHHHHHHHHHHHHcCCCcceEE-EeeccchhHHHHhhHH
Confidence 389999999999999999764 5999999985 1 246778887 65543210 000
Q ss_pred --HHHH-HhCCCCccEEEeCCC
Q psy1489 127 --RLVT-ILKDDKLDVVLSDMA 145 (229)
Q Consensus 127 --~i~~-~~~~~~~D~V~sd~~ 145 (229)
.+.. .+....+|+|+.|++
T Consensus 266 ~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 266 FNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp GTTGGGS-GGCTTESEEEE---
T ss_pred HHhhhhhhhhhcCCCEEEEcCC
Confidence 0000 022346899999985
No 239
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.11 E-value=0.0011 Score=53.47 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=53.4
Q ss_pred CCeeEeecCCCCc--hH--HHHHHHHhccCCCCCCCCcEEEEEeCCCC---------------CCC--------------
Q psy1489 62 GLKVLDCGAAPGS--WS--QVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------------YPI-------------- 108 (229)
Q Consensus 62 g~~VLDlGcGpG~--~s--~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------------~~~-------------- 108 (229)
.-+|...||++|. +| ..+.+.... ......+|+|.|+++. ..+
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~----~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~ 107 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPG----ALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDG 107 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-----TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-C
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcc----cCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCC
Confidence 4689999999995 33 333342210 0001358999999951 011
Q ss_pred ----------CCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCC
Q psy1489 109 ----------DGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGA 178 (229)
Q Consensus 109 ----------~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG 178 (229)
..+.|. +.|+.+. ....+.||+|+|--.. .+-..+....+++...+.|+|||
T Consensus 108 ~~~~v~~~lr~~V~F~-~~NL~~~--------~~~~~~fD~I~CRNVl---------IYF~~~~~~~vl~~l~~~L~pgG 169 (196)
T PF01739_consen 108 GGYRVKPELRKMVRFR-RHNLLDP--------DPPFGRFDLIFCRNVL---------IYFDPETQQRVLRRLHRSLKPGG 169 (196)
T ss_dssp CCTTE-HHHHTTEEEE-E--TT-S--------------EEEEEE-SSG---------GGS-HHHHHHHHHHHGGGEEEEE
T ss_pred CceeEChHHcCceEEE-ecccCCC--------CcccCCccEEEecCEE---------EEeCHHHHHHHHHHHHHHcCCCC
Confidence 124555 6665551 1224689999994321 22223456788999999999999
Q ss_pred EEEEe
Q psy1489 179 DCLIK 183 (229)
Q Consensus 179 ~~v~~ 183 (229)
.|++-
T Consensus 170 ~L~lG 174 (196)
T PF01739_consen 170 YLFLG 174 (196)
T ss_dssp EEEE-
T ss_pred EEEEe
Confidence 99874
No 240
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.11 E-value=0.0012 Score=55.93 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=31.3
Q ss_pred HhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 50 LEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 50 ~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
.|+..+..-++| .+|||+|||||.-+-.+.+..+ ....++++|.|+
T Consensus 23 ~El~~r~p~f~P-~~vLD~GsGpGta~wAa~~~~~--------~~~~~~~vd~s~ 68 (274)
T PF09243_consen 23 SELRKRLPDFRP-RSVLDFGSGPGTALWAAREVWP--------SLKEYTCVDRSP 68 (274)
T ss_pred HHHHHhCcCCCC-ceEEEecCChHHHHHHHHHHhc--------CceeeeeecCCH
Confidence 344444332443 6899999999987666666553 234799999997
No 241
>KOG0024|consensus
Probab=97.10 E-value=0.003 Score=54.17 Aligned_cols=101 Identities=23% Similarity=0.294 Sum_probs=64.7
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCC--Ch-hHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFT--QP-DIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~--~~-~~~~~i~~ 130 (229)
+++|.+||-+|+|| |-.+...|+-+ +..+|+.+|+.+- ..--+++.+ ..+-. .+ .....+..
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~---------GA~~VVi~d~~~~Rle~Ak~~Ga~~~-~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAM---------GASDVVITDLVANRLELAKKFGATVT-DPSSHKSSPQELAELVEK 236 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHc---------CCCcEEEeecCHHHHHHHHHhCCeEE-eeccccccHHHHHHHHHh
Confidence 56799999999999 77777777776 4679999999871 111244433 11111 12 22334444
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
.+....+|+.+. ++|. ...++.+...++.||++++..+.
T Consensus 237 ~~g~~~~d~~~d-----CsG~------------~~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 237 ALGKKQPDVTFD-----CSGA------------EVTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred hccccCCCeEEE-----ccCc------------hHHHHHHHHHhccCCEEEEeccC
Confidence 555567898886 3342 23455678889999998776554
No 242
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.10 E-value=0.0024 Score=54.11 Aligned_cols=101 Identities=16% Similarity=0.097 Sum_probs=68.2
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----------CCCCC-eEEecCCCCChhHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----------PIDGA-VVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----------~~~~~-~~~~~~D~~~~~~~~~i~ 129 (229)
.-+|||++||+|..-.-+.+..+ . ....|.-.|.++.. .+.++ +|. ++|..+......+
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~------~-~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~-~~dAfd~~~l~~l- 206 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHP------E-RPDSILLRDYSPINVEKGRALIAERGLEDIARFE-QGDAFDRDSLAAL- 206 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCC------C-CCceEEEEeCCHHHHHHHHHHHHHcCCccceEEE-ecCCCCHhHhhcc-
Confidence 46899999999998777666542 1 12478889999731 24555 888 9999986543322
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.-..++++..+-... +..-.++...+.-+.+.|.|||.+|..
T Consensus 207 ----~p~P~l~iVsGL~El--------F~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311)
T PF12147_consen 207 ----DPAPTLAIVSGLYEL--------FPDNDLVRRSLAGLARALEPGGYLIYT 248 (311)
T ss_pred ----CCCCCEEEEecchhh--------CCcHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 235788887554321 111234566788889999999999764
No 243
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.03 E-value=0.0014 Score=54.90 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=44.1
Q ss_pred CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC---------------ChHHHHHHHHhh
Q psy1489 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR---------------NRPQLEESITRF 200 (229)
Q Consensus 136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~---------------~~~~~~~~l~~~ 200 (229)
+||+|++...... ...+ .+.-..+++.+.++|||||.|++...-.. +...+.+.++..
T Consensus 158 ~~D~v~s~fcLE~-a~~d------~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~a 230 (256)
T PF01234_consen 158 KFDCVISSFCLES-ACKD------LDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEA 230 (256)
T ss_dssp SEEEEEEESSHHH-H-SS------HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHT
T ss_pred chhhhhhhHHHHH-HcCC------HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHc
Confidence 5999998664210 0011 22345789999999999999997542111 245566677665
Q ss_pred -CCeeEEEcCCCCCCCCceE-EEEec
Q psy1489 201 -YSQVKILKPPSSRSHSAEL-FLLGR 224 (229)
Q Consensus 201 -F~~v~~~kp~~sr~~s~E~-Y~v~~ 224 (229)
|.-....+ .........+ |++|+
T Consensus 231 G~~i~~~~~-~~~~~d~~~~~f~~a~ 255 (256)
T PF01234_consen 231 GFDIEDLEK-QSKVSDYEGMFFLVAR 255 (256)
T ss_dssp TEEEEEEEG--TTTB---EEEEEEEE
T ss_pred CCEEEeccc-ccCcCCCCcEEEEEEe
Confidence 54344443 3444444444 44444
No 244
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.01 E-value=0.0014 Score=49.71 Aligned_cols=117 Identities=14% Similarity=0.213 Sum_probs=60.9
Q ss_pred EEEEEeCCCCC-----------CC-CCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHH
Q psy1489 96 LVLSVDKLPIY-----------PI-DGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLA 163 (229)
Q Consensus 96 ~v~gvD~~~~~-----------~~-~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~ 163 (229)
+|+|.|+++.. .. .++.++ ..+-.+ +.+.++++++|+++.|..-.+.|.+.. ....+..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li-~~sHe~------l~~~i~~~~v~~~iFNLGYLPggDk~i--~T~~~TT 71 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLI-LDSHEN------LDEYIPEGPVDAAIFNLGYLPGGDKSI--TTKPETT 71 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEE-ES-GGG------GGGT--S--EEEEEEEESB-CTS-TTS--B--HHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEE-ECCHHH------HHhhCccCCcCEEEEECCcCCCCCCCC--CcCcHHH
Confidence 58999998620 11 246666 554333 334455568999999876544454433 2333445
Q ss_pred HHHHHHHHHcccCCCEEEEeecCCCC-----hHHHHHHHHhh----CCeeEEEcCCCCCCCCceEEEEe
Q psy1489 164 IAVIRFAVTYSKPGADCLIKIWDGRN-----RPQLEESITRF----YSQVKILKPPSSRSHSAELFLLG 223 (229)
Q Consensus 164 ~~~l~~~~~~LkpgG~~v~~~~~~~~-----~~~~~~~l~~~----F~~v~~~kp~~sr~~s~E~Y~v~ 223 (229)
..+++.+.++|+|||.+++.++.+.. ...+.+.+... | .|..+.+ .-|.++....++.
T Consensus 72 l~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~-~V~~~~~-~N~~~~pp~l~~i 138 (140)
T PF06962_consen 72 LKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEF-NVLKYQF-INQKNNPPLLVII 138 (140)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTE-EEEEEEE-SS-SS---EEEEE
T ss_pred HHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceE-EEEEEEc-cCCCCCCCEEEEE
Confidence 67899999999999999998988653 23334444332 3 2444434 4445555544443
No 245
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.00 E-value=0.0021 Score=58.09 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=74.9
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---CC-----CCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---PI-----DGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---~~-----~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
..|+|+.+|.|+|+..|... + |.-.-.-|.. .+ .++.-+ .-|+.+. +.. + +
T Consensus 367 RNVMDMnAg~GGFAAAL~~~----------~---VWVMNVVP~~~~ntL~vIydRGLIG~-yhDWCE~-----fsT-Y-P 425 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD----------P---VWVMNVVPVSGPNTLPVIYDRGLIGV-YHDWCEA-----FST-Y-P 425 (506)
T ss_pred eeeeeecccccHHHHHhccC----------C---ceEEEecccCCCCcchhhhhcccchh-ccchhhc-----cCC-C-C
Confidence 57999999999999887653 2 2222222211 01 122222 2333331 111 1 5
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCCC
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRS 214 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~ 214 (229)
..||+|.++.-+.. +...-....++-++-|+|+|||.+++... ..-..++...+..+-=++.++.. ...+
T Consensus 426 RTYDLlHA~~lfs~--------~~~rC~~~~illEmDRILRP~G~~iiRD~-~~vl~~v~~i~~~lrW~~~~~d~-e~g~ 495 (506)
T PF03141_consen 426 RTYDLLHADGLFSL--------YKDRCEMEDILLEMDRILRPGGWVIIRDT-VDVLEKVKKIAKSLRWEVRIHDT-EDGP 495 (506)
T ss_pred cchhheehhhhhhh--------hcccccHHHHHHHhHhhcCCCceEEEecc-HHHHHHHHHHHHhCcceEEEEec-CCCC
Confidence 68999999765421 11112345788889999999999988532 12234444555554334555533 4445
Q ss_pred CCceEEEEecc
Q psy1489 215 HSAELFLLGRG 225 (229)
Q Consensus 215 ~s~E~Y~v~~~ 225 (229)
...|..+||++
T Consensus 496 ~~~EkiL~~~K 506 (506)
T PF03141_consen 496 DGPEKILICQK 506 (506)
T ss_pred CCCceEEEEEC
Confidence 66899999975
No 246
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.017 Score=49.29 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=53.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------C-CCCCeEEecCCCCChhHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------P-IDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------~-~~~~~~~~~~D~~~~~~~~~i 128 (229)
.+++...+|.--|-|+.+..+++.++ +.++++|+|..+- . + -.++.++ ++++.+....
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~--------~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v-~~~F~~l~~~--- 88 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLP--------DLGRLIGIDRDPQAIAIAKERLKEFDGRVTLV-HGNFANLAEA--- 88 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCC--------CCCeEEEEcCCHHHHHHHHHHhhccCCcEEEE-eCcHHHHHHH---
Confidence 45778999999999999999999986 5678999999871 1 1 2367788 7876663221
Q ss_pred HHHhCCCCccEEEeCCC
Q psy1489 129 VTILKDDKLDVVLSDMA 145 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~ 145 (229)
.....-+++|-|+.|..
T Consensus 89 l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 89 LKELGIGKVDGILLDLG 105 (314)
T ss_pred HHhcCCCceeEEEEecc
Confidence 11223457888888753
No 247
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.94 E-value=0.0073 Score=53.02 Aligned_cols=101 Identities=27% Similarity=0.355 Sum_probs=63.1
Q ss_pred CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----C-CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----Y-PIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~-~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+++.+|+-+|||| |.++..+++.. +..+|+.+|.++- . ..-+...+ ...-.+ +....+.+...
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~---------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~-~~~~~~-~~~~~~~~~t~ 235 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLL---------GASVVIVVDRSPERLELAKEAGGADVV-VNPSED-DAGAEILELTG 235 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---------CCceEEEeCCCHHHHHHHHHhCCCeEe-ecCccc-cHHHHHHHHhC
Confidence 3455999999999 77777777776 4679999999871 1 11233322 111111 22333434444
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~ 188 (229)
+..+|+|+- ++|. ..++..+.+.++|||++++.-..+.
T Consensus 236 g~g~D~vie-----~~G~------------~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 236 GRGADVVIE-----AVGS------------PPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCCCCEEEE-----CCCC------------HHHHHHHHHHhcCCCEEEEEeccCC
Confidence 457999996 2231 1367779999999999987654433
No 248
>KOG1269|consensus
Probab=96.92 E-value=0.00021 Score=62.79 Aligned_cols=97 Identities=25% Similarity=0.238 Sum_probs=66.3
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----C-------CC-CCeEEecCCCCChhHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----P-------ID-GAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~-------~~-~~~~~~~~D~~~~~~~~ 126 (229)
..++..++|+|||-|..+.+++... ...++|+|.++-. . +. ...++ .+|+.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~----------~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~-~~~~~~----- 171 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFK----------KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFV-VADFGK----- 171 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhc----------cCCccCCCcCHHHHHHHHHHHHHHHhhhhccee-hhhhhc-----
Confidence 3567799999999999999998864 3689999998621 0 11 11123 344443
Q ss_pred HHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 127 RLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 127 ~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
..+++..||.+.+.-. .........++.++.++++|||.++++.|
T Consensus 172 ---~~fedn~fd~v~~ld~-----------~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 172 ---MPFEDNTFDGVRFLEV-----------VCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred ---CCCCccccCcEEEEee-----------cccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 2366788999887321 11122235788999999999999998765
No 249
>PRK13699 putative methylase; Provisional
Probab=96.88 E-value=0.014 Score=48.16 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=51.0
Q ss_pred HHHHhCCCCccEEEeCCCCCCC--C--CCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh-C-
Q psy1489 128 LVTILKDDKLDVVLSDMAPNAT--G--MREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF-Y- 201 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~--g--~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~-F- 201 (229)
+...++++++|+|+.|++-... . ..........+.....+.++.++|||||.+++- ........+...++.. |
T Consensus 12 ~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if-~~~~~~~~~~~al~~~GF~ 90 (227)
T PRK13699 12 VMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF-YGWNRVDRFMAAWKNAGFS 90 (227)
T ss_pred HHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE-eccccHHHHHHHHHHCCCE
Confidence 3345889999999999876421 0 000111122345668899999999999988752 1222234555555543 3
Q ss_pred --CeeEEEcCCCC
Q psy1489 202 --SQVKILKPPSS 212 (229)
Q Consensus 202 --~~v~~~kp~~s 212 (229)
..+.+.|+...
T Consensus 91 l~~~IiW~K~~~~ 103 (227)
T PRK13699 91 VVGHLVFTKNYTS 103 (227)
T ss_pred EeeEEEEECCCCC
Confidence 45677787544
No 250
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.88 E-value=0.0016 Score=54.86 Aligned_cols=69 Identities=25% Similarity=0.363 Sum_probs=51.1
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C--------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I--------YPIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~--------~~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.++..|||+|+|+|.+|..+++.. .+|+++|+++ + ...++++++ .+|+.+.+....
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~-----------~~v~~vE~d~~~~~~L~~~~~~~~~~~vi-~~D~l~~~~~~~--- 93 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG-----------KRVIAVEIDPDLAKHLKERFASNPNVEVI-NGDFLKWDLYDL--- 93 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS-----------SEEEEEESSHHHHHHHHHHCTTCSSEEEE-ES-TTTSCGGGH---
T ss_pred CCCCEEEEeCCCCccchhhHhccc-----------CcceeecCcHhHHHHHHHHhhhcccceee-ecchhccccHHh---
Confidence 478999999999999999999874 5999999986 1 124678999 999887442211
Q ss_pred HhCCCCccEEEeCCC
Q psy1489 131 ILKDDKLDVVLSDMA 145 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~ 145 (229)
+ ......|+++.+
T Consensus 94 -~-~~~~~~vv~NlP 106 (262)
T PF00398_consen 94 -L-KNQPLLVVGNLP 106 (262)
T ss_dssp -C-SSSEEEEEEEET
T ss_pred -h-cCCceEEEEEec
Confidence 1 345678888765
No 251
>KOG2671|consensus
Probab=96.78 E-value=0.0055 Score=52.96 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=74.2
Q ss_pred CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-CC------------------CCeEEec
Q psy1489 57 KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-ID------------------GAVVLSK 116 (229)
Q Consensus 57 ~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-~~------------------~~~~~~~ 116 (229)
...++|+.|.|==-|||++....|.. | +.|+|-||+- +.. -. =+.++ .
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~F-G----------a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl-~ 271 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHF-G----------AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVL-T 271 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhh-c----------ceeeccccchheeecccCCCcchhHhHHHhCCcchhhhee-e
Confidence 34689999999999999998887765 4 6999999985 211 00 13345 6
Q ss_pred CCCCChhHHHHHHHHhCCCCccEEEeCCCCCC---------------C-------CCCcccHHHHHHHHHHHHHHHHHcc
Q psy1489 117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAPNA---------------T-------GMREMDHDLITQLAIAVIRFAVTYS 174 (229)
Q Consensus 117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~---------------~-------g~~~~d~~~~~~~~~~~l~~~~~~L 174 (229)
+|.+++..+. ...||.|+||++-.+ + -.+...+.....+.-..|..+.+.|
T Consensus 272 ~D~sn~~~rs-------n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L 344 (421)
T KOG2671|consen 272 ADFSNPPLRS-------NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL 344 (421)
T ss_pred ecccCcchhh-------cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh
Confidence 7777765332 347999999987310 0 0112234444556668899999999
Q ss_pred cCCCEEEEe
Q psy1489 175 KPGADCLIK 183 (229)
Q Consensus 175 kpgG~~v~~ 183 (229)
..||++++-
T Consensus 345 ~~ggrlv~w 353 (421)
T KOG2671|consen 345 VDGGRLVFW 353 (421)
T ss_pred hcCceEEEe
Confidence 999999864
No 252
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.69 E-value=0.0085 Score=50.59 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=28.2
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
.+.||+|+|--.. ...|. .....++...+..|+|||.|++
T Consensus 200 ~~~fD~IfCRNVL-----IYFd~----~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 200 LGKFDLIFCRNVL-----IYFDE----ETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred cCCCCEEEEcceE-----EeeCH----HHHHHHHHHHHHHhCCCCEEEE
Confidence 4679999993221 11222 3456788889999999999986
No 253
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.66 E-value=0.006 Score=52.42 Aligned_cols=74 Identities=22% Similarity=0.361 Sum_probs=53.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---------C-CCCCeEEecCCCCChhHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---------P-IDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---------~-~~~~~~~~~~D~~~~~~~~~i 128 (229)
+++|..++|.=+|-|+.|..+++.++ .++|+|+|.++.. . ..++.++ ++++.+.. ..+
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~---------~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i-~~nF~~l~--~~l 85 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLG---------TGRLIGIDRDPQAIAFAKERLSDFEGRVVLI-HDNFANFF--EHL 85 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCC---------CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEE-eCCHHHHH--HHH
Confidence 46788999999999999999998873 4899999999721 1 1357788 88777632 111
Q ss_pred HHHhCCCCccEEEeCCC
Q psy1489 129 VTILKDDKLDVVLSDMA 145 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~ 145 (229)
......++|.|+.|..
T Consensus 86 -~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 86 -DELLVTKIDGILVDLG 101 (305)
T ss_pred -HhcCCCcccEEEEecc
Confidence 1123457999999864
No 254
>PRK10742 putative methyltransferase; Provisional
Probab=96.60 E-value=0.014 Score=48.67 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=47.2
Q ss_pred cCCCC--eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---------C----------C-CCCeEEec
Q psy1489 59 LRPGL--KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---------P----------I-DGAVVLSK 116 (229)
Q Consensus 59 ~~~g~--~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---------~----------~-~~~~~~~~ 116 (229)
+++|. +|||+-+|.|..+..++.+ | +.|+++|.++.. . + .+++++ .
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~-G----------~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~-~ 151 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASV-G----------CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI-H 151 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHc-C----------CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE-e
Confidence 45677 8999999999999999976 3 579999999720 1 0 123344 4
Q ss_pred CCCCChhHHHHHHHHhCCCCccEEEeCCCC
Q psy1489 117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAP 146 (229)
Q Consensus 117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~ 146 (229)
+|..+ .+.. . ...||+|+.|++.
T Consensus 152 ~da~~-----~L~~-~-~~~fDVVYlDPMf 174 (250)
T PRK10742 152 ASSLT-----ALTD-I-TPRPQVVYLDPMF 174 (250)
T ss_pred CcHHH-----HHhh-C-CCCCcEEEECCCC
Confidence 44322 2332 2 3379999999875
No 255
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.57 E-value=0.013 Score=42.98 Aligned_cols=93 Identities=23% Similarity=0.309 Sum_probs=55.2
Q ss_pred eEeecCCCCchHHHHHHHHhccCCCCCCCC-cEEEEEeCCC-CCC-----C--CC---CeEEecCCCCChhHHHHHHHHh
Q psy1489 65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPK-GLVLSVDKLP-IYP-----I--DG---AVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 65 VLDlGcGpG~~s~~la~~~~~~~~~~~~~~-~~v~gvD~~~-~~~-----~--~~---~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
++|+|||+|..+ .++... +. ..++|+|+++ +.. . .. +.+. ..|.... ...+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~---------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~ 114 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLG---------GRGAYVVGVDLSPEMLALARARAEGAGLGLVDFV-VADALGG------VLPF 114 (257)
T ss_pred eEEecCCcCHHH-HHHHhC---------CCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEE-EeccccC------CCCC
Confidence 999999999987 444433 22 3889999986 110 0 11 3444 4554431 0013
Q ss_pred CC-CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 133 KD-DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 133 ~~-~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
.. ..||++.+.... ...+ ....+..+.+.|+|+|.+++....
T Consensus 115 ~~~~~~d~~~~~~~~-----~~~~-------~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 115 EDSASFDLVISLLVL-----HLLP-------PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred CCCCceeEEeeeeeh-----hcCC-------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 33 378998332211 0011 346778899999999999887654
No 256
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.56 E-value=0.0023 Score=51.10 Aligned_cols=91 Identities=22% Similarity=0.240 Sum_probs=54.5
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCCC------CC--CeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYPI------DG--AVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~~------~~--~~~~~~~D~~~~~~~~~i~~ 130 (229)
.|++|||+|+|+|--++..+.. ++..|++.|+.| +..+ .+ +.+. ..|+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a----------GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~-~~d~~---------- 137 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA----------GAAEVVAADIDPWLEQAIRLNAAANGVSILFT-HADLI---------- 137 (218)
T ss_pred ccceeeecccccChHHHHHHHh----------hhHHHHhcCCChHHHHHhhcchhhccceeEEe-ecccc----------
Confidence 5899999999999988886654 346788888876 2211 12 2333 33322
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
..+..||+|+..--. .++. .....+. +.+.|+..|.-|+ +++
T Consensus 138 -g~~~~~Dl~LagDlf-------y~~~----~a~~l~~-~~~~l~~~g~~vl-vgd 179 (218)
T COG3897 138 -GSPPAFDLLLAGDLF-------YNHT----EADRLIP-WKDRLAEAGAAVL-VGD 179 (218)
T ss_pred -CCCcceeEEEeecee-------cCch----HHHHHHH-HHHHHHhCCCEEE-EeC
Confidence 235679999973211 1221 1223344 6666777777666 444
No 257
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.52 E-value=0.011 Score=49.73 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=58.5
Q ss_pred CeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------CCCCC--CeEEecCCCCChhHHH---
Q psy1489 63 LKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------YPIDG--AVVLSKCDFTQPDIQD--- 126 (229)
Q Consensus 63 ~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~~~~~--~~~~~~~D~~~~~~~~--- 126 (229)
..+||||||= -+..-.+++... |.++|+=||..|+ ...++ ..++ ++|+++++..-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~--------P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v-~aD~r~p~~iL~~p 140 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVA--------PDARVVYVDNDPVVLAHARALLADNPRGRTAYV-QADLRDPEAILAHP 140 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH---------TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEE-E--TT-HHHHHCSH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhC--------CCceEEEECCCchHHHHHHhhhcCCCCccEEEE-eCCCCCHHHHhcCH
Confidence 6799999995 234455677766 8899999999983 12344 6788 99999976432
Q ss_pred HHHHHhC-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489 127 RLVTILK-DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188 (229)
Q Consensus 127 ~i~~~~~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~ 188 (229)
.....++ ++.+-+++....... .+. +....++....+.|.||..+++......
T Consensus 141 ~~~~~lD~~rPVavll~~vLh~v---~D~------~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 141 EVRGLLDFDRPVAVLLVAVLHFV---PDD------DDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp HHHCC--TTS--EEEECT-GGGS----CG------CTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred HHHhcCCCCCCeeeeeeeeeccC---CCc------cCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 2222332 345555555432211 111 1245678889999999999999887654
No 258
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.45 E-value=0.0038 Score=47.48 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=31.9
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
.+...|+|+|||-|.++..++..+.. ..+..+|+|||.++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~-----~~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCN-----SSPNLRVLGIDCNE 63 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHh-----cCCCCeEEEEECCc
Confidence 46789999999999999999984420 01457999999987
No 259
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.41 E-value=0.0031 Score=47.55 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=28.0
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
.|+|+|||.|.++..+++.. +.++|+++|.++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~---------~~~~v~~~E~~~ 32 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG---------AEGRVIAFEPLP 32 (143)
T ss_pred CEEEccCCccHHHHHHHHhC---------CCCEEEEEecCH
Confidence 48999999999999988764 556999999997
No 260
>KOG3115|consensus
Probab=96.35 E-value=0.012 Score=47.47 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=28.2
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCC
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL 103 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~ 103 (229)
-.+.|||||-|++...|+... |+.-++|.+|.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f---------PdtLiLGmEIR 93 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF---------PDTLILGMEIR 93 (249)
T ss_pred ceEEeeccCccchhhhccccC---------ccceeeeehhh
Confidence 468999999999999998876 78899999986
No 261
>KOG3987|consensus
Probab=96.33 E-value=0.0008 Score=54.19 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=56.0
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-C--CCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-I--DGAVVLSKCDFTQPDIQDRLVTILKDDKL 137 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-~--~~~~~~~~~D~~~~~~~~~i~~~~~~~~~ 137 (229)
..++||||+|-|.++..++.... +|+|.++|. |.. + .+..+++..++. -.+-++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe-----------evyATElS~tMr~rL~kk~ynVl~~~ew~-----------~t~~k~ 170 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE-----------EVYATELSWTMRDRLKKKNYNVLTEIEWL-----------QTDVKL 170 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH-----------HHHHHHhhHHHHHHHhhcCCceeeehhhh-----------hcCcee
Confidence 47999999999999999887763 688888886 421 1 122222111111 124468
Q ss_pred cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccC-CCEEEEee
Q psy1489 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKP-GADCLIKI 184 (229)
Q Consensus 138 D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp-gG~~v~~~ 184 (229)
|+|.|-- -..........|.-++.+|+| +|++|+..
T Consensus 171 dli~clN-----------lLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 171 DLILCLN-----------LLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred ehHHHHH-----------HHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 9888711 111122234667778889999 79887653
No 262
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.29 E-value=0.0034 Score=51.11 Aligned_cols=94 Identities=17% Similarity=0.131 Sum_probs=54.5
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC-------C-CCC-CeEEecCCCCChhHHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY-------P-IDG-AVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~-------~-~~~-~~~~~~~D~~~~~~~~~i~~ 130 (229)
..+.||.|||-|..|..++..+ -.+|--||..+ .. . ... ..+. +..+. +
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~----------f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~-~~gLQ---------~ 115 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV----------FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFY-CVGLQ---------D 115 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-----------SEEEEEES-HHHHHHHHHHTCCGGCCEEEEE-ES-GG---------G
T ss_pred cceEEecccccchhHHHHHHHh----------cCEeEEeccCHHHHHHHHHHhcccCCCcceEE-ecCHh---------h
Confidence 4799999999999998765332 13777788765 10 0 111 1222 22222 2
Q ss_pred HhC-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 131 ILK-DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 131 ~~~-~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
+.| +.+||+|++- |..-|+.. +.+...|..+...|+|+|.+++|.
T Consensus 116 f~P~~~~YDlIW~Q--------W~lghLTD-~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 116 FTPEEGKYDLIWIQ--------WCLGHLTD-EDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp ----TT-EEEEEEE--------S-GGGS-H-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCcEeEEEeh--------HhhccCCH-HHHHHHHHHHHHhCcCCcEEEEEe
Confidence 233 3689999992 22323222 344578889999999999999985
No 263
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.80 E-value=0.037 Score=50.97 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=59.5
Q ss_pred CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCC-------------
Q psy1489 60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQ------------- 121 (229)
Q Consensus 60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~------------- 121 (229)
.++.+|+-+|||+ |..+...++.+| +.|+++|.++. + ..-++++. .-|..+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG----------A~V~a~D~~~~rle~aeslGA~~v-~i~~~e~~~~~~gya~~~s 231 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG----------AIVRAFDTRPEVAEQVESMGAEFL-ELDFEEEGGSGDGYAKVMS 231 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHHcCCeEE-Eeccccccccccchhhhcc
Confidence 3689999999999 667777787765 48999999861 1 11244433 222211
Q ss_pred hhHHHHHHHHhCC--CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 122 PDIQDRLVTILKD--DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 122 ~~~~~~i~~~~~~--~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
.+..+...+.+.+ ..+|+|+.-.. ...... ...+.+++.+.+||||.++.--
T Consensus 232 ~~~~~~~~~~~~~~~~gaDVVIetag-----~pg~~a------P~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 232 EEFIKAEMALFAEQAKEVDIIITTAL-----IPGKPA------PKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred hhHHHHHHHHHHhccCCCCEEEECCC-----CCcccC------cchHHHHHHHhcCCCCEEEEEc
Confidence 1111112222222 46999998442 211100 0112467889999999987543
No 264
>KOG1709|consensus
Probab=95.79 E-value=0.049 Score=44.35 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=62.2
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-----CC-----CCCCCeEEecCCCCChhHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-----IY-----PIDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-----~~-----~~~~~~~~~~~D~~~~~~~~~i 128 (229)
..+|.+||.+|-|-|.....+-++- |.-+. -|+..| |. ..+++.++ .+-+.+ .
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~---------p~~H~-IiE~hp~V~krmr~~gw~ek~nViil-~g~WeD------v 161 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAP---------PDEHW-IIEAHPDVLKRMRDWGWREKENVIIL-EGRWED------V 161 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcC---------CcceE-EEecCHHHHHHHHhcccccccceEEE-ecchHh------h
Confidence 3579999999999998777655442 44444 355554 11 12456666 565544 3
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v 181 (229)
...++++.||-|+-|.-. ...+......+-+.++|||+|.|-
T Consensus 162 l~~L~d~~FDGI~yDTy~-----------e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 162 LNTLPDKHFDGIYYDTYS-----------ELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred hccccccCcceeEeechh-----------hHHHHHHHHHHHHhhhcCCCceEE
Confidence 334778899999997631 222344556667999999999874
No 265
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.72 E-value=0.085 Score=46.71 Aligned_cols=113 Identities=21% Similarity=0.308 Sum_probs=63.0
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----CCCCCCeEEecCCCCCh-hHHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----YPIDGAVVLSKCDFTQP-DIQDRLVTI 131 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----~~~~~~~~~~~~D~~~~-~~~~~i~~~ 131 (229)
+.+|.+||.+|||+ |..+..+++..+ ..+|+++|.++ . ....++.++ +..+. .....+...
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g---------~~~vi~~~~~~~~~~~~~~~~~~~vi---~~~~~~~~~~~l~~~ 249 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLG---------AERVIAIDRVPERLEMARSHLGAETI---NFEEVDDVVEALREL 249 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHHcCCcEEE---cCCcchHHHHHHHHH
Confidence 46789999999988 778888888763 34699999876 1 111133333 22222 233445554
Q ss_pred hCCCCccEEEeCCCCCCCCCCcc---cH-HHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREM---DH-DLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~---d~-~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
..+..+|+|+............. .+ +.........+..+.+.|+++|++++.
T Consensus 250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 55557999987331100000000 00 000000124567788899999999864
No 266
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.68 E-value=0.07 Score=46.63 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=57.5
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAV-VLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~-~~~~~D~~~~~~~~~i~~~~ 132 (229)
+++|++||-.|||+ |..+..+++..+ ..+|+++|.++.. .--++. ++ |..+.+....+....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G---------~~~Vi~~~~~~~~~~~~~~~Ga~~~i---~~~~~~~~~~i~~~~ 241 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAG---------ASKIIAVDIDDRKLEWAREFGATHTV---NSSGTDPVEAIRALT 241 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHcCCceEE---cCCCcCHHHHHHHHh
Confidence 56799999999866 555566666543 2359999887611 111222 22 223333344455444
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
.+..+|+|+--. |. ...+..+.+.|++||++++.-
T Consensus 242 ~~~g~d~vid~~-----g~------------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 242 GGFGADVVIDAV-----GR------------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCCCCEEEECC-----CC------------HHHHHHHHHHhccCCEEEEEC
Confidence 455799998622 21 123455778899999998643
No 267
>KOG3178|consensus
Probab=95.64 E-value=0.039 Score=47.89 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=62.3
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--C----CCC-CCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--I----YPI-DGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~----~~~-~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
-...+|+|.|.|..+..+..+. | +|-+++... . ..+ ++++.+ .+|..+. .|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f---------p--~ik~infdlp~v~~~a~~~~~gV~~v-~gdmfq~---------~P- 235 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY---------P--HIKGINFDLPFVLAAAPYLAPGVEHV-AGDMFQD---------TP- 235 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC---------C--CCceeecCHHHHHhhhhhhcCCccee-ccccccc---------CC-
Confidence 3789999999999998888865 3 455555542 1 123 667777 7776652 33
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
+-|+|+.-= +.+.+ .-+.|.++|+.+..-|+|||.++++..
T Consensus 236 -~~daI~mkW---iLhdw------tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 236 -KGDAIWMKW---ILHDW------TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred -CcCeEEEEe---ecccC------ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 346888711 11222 224578999999999999999998754
No 268
>KOG2730|consensus
Probab=95.62 E-value=0.019 Score=46.84 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=48.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----C-------CC-CCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----Y-------PI-DGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~-------~~-~~~~~~~~~D~~~~~~~~~i 128 (229)
.-..|+|.-||-||-+...+.+. ..|++||++|. . .+ ..++++ +||+.+.-.-.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~-----------~~VisIdiDPikIa~AkhNaeiYGI~~rItFI-~GD~ld~~~~lq- 160 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG-----------PYVIAIDIDPVKIACARHNAEVYGVPDRITFI-CGDFLDLASKLK- 160 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC-----------CeEEEEeccHHHHHHHhccceeecCCceeEEE-echHHHHHHHHh-
Confidence 34689999999999888888764 59999999982 1 12 258899 999887432111
Q ss_pred HHHhCCCCccEEEeCCCC
Q psy1489 129 VTILKDDKLDVVLSDMAP 146 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~ 146 (229)
+....+|+|+..+++
T Consensus 161 ---~~K~~~~~vf~sppw 175 (263)
T KOG2730|consen 161 ---ADKIKYDCVFLSPPW 175 (263)
T ss_pred ---hhhheeeeeecCCCC
Confidence 223347888886654
No 269
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.46 E-value=0.077 Score=46.85 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=69.0
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCC---------------------------------CCCCcEEEEEeCCC-C
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDS---------------------------------KQPKGLVLSVDKLP-I 105 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~---------------------------------~~~~~~v~gvD~~~-~ 105 (229)
+++..++|-=||+|.+.+.+|.... + -+| .+.. .++|+|+++ +
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~-n-iAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~-~~~G~Did~r~ 266 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAA-N-IAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP-IIYGSDIDPRH 266 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhcc-c-cCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc-eEEEecCCHHH
Confidence 3567899999999999999886541 0 000 0011 577999997 2
Q ss_pred C----------CCC-CCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcc
Q psy1489 106 Y----------PID-GAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS 174 (229)
Q Consensus 106 ~----------~~~-~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~L 174 (229)
. .+. -++|. ++|+++. ...+ +.+|+|+||++- |.+-.++.....+-......+.+.+
T Consensus 267 i~~Ak~NA~~AGv~d~I~f~-~~d~~~l------~~~~--~~~gvvI~NPPY---GeRlg~~~~v~~LY~~fg~~lk~~~ 334 (381)
T COG0116 267 IEGAKANARAAGVGDLIEFK-QADATDL------KEPL--EEYGVVISNPPY---GERLGSEALVAKLYREFGRTLKRLL 334 (381)
T ss_pred HHHHHHHHHhcCCCceEEEE-EcchhhC------CCCC--CcCCEEEeCCCc---chhcCChhhHHHHHHHHHHHHHHHh
Confidence 1 122 36777 8988772 2212 589999999864 5554444222225556666777888
Q ss_pred cCCCEEEEe
Q psy1489 175 KPGADCLIK 183 (229)
Q Consensus 175 kpgG~~v~~ 183 (229)
+.-+.+|+.
T Consensus 335 ~~ws~~v~t 343 (381)
T COG0116 335 AGWSRYVFT 343 (381)
T ss_pred cCCceEEEE
Confidence 777777663
No 270
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.40 E-value=0.061 Score=46.89 Aligned_cols=92 Identities=17% Similarity=0.233 Sum_probs=56.8
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAV-VLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~-~~~~~D~~~~~~~~~i~~~~ 132 (229)
++||++|+-.|+|- |..+..+|+.++ .+|+++|.++- ..--+++ ++ +..+.+....+.+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g----------a~Via~~~~~~K~e~a~~lGAd~~i---~~~~~~~~~~~~~-- 228 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG----------AEVIAITRSEEKLELAKKLGADHVI---NSSDSDALEAVKE-- 228 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC----------CeEEEEeCChHHHHHHHHhCCcEEE---EcCCchhhHHhHh--
Confidence 46899999999981 334555565543 79999999971 0111232 33 2224333333322
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
.||+|+.-.++ ..+..+.+.|++||++++.-..
T Consensus 229 ---~~d~ii~tv~~------------------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 229 ---IADAIIDTVGP------------------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---hCcEEEECCCh------------------hhHHHHHHHHhcCCEEEEECCC
Confidence 39999984421 2456688899999999875443
No 271
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.29 E-value=0.058 Score=47.30 Aligned_cols=102 Identities=21% Similarity=0.156 Sum_probs=65.8
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC-----------------CCCCeEEecCCCCC
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP-----------------IDGAVVLSKCDFTQ 121 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~-----------------~~~~~~~~~~D~~~ 121 (229)
+.-.+||-||-|-|--...+.+.- ...+|+-||++| |.. .++++++ ..|..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP---------~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv-~dDAf~ 357 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYP---------QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVV-NDDAFQ 357 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCC---------CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEE-eccHHH
Confidence 445789999999998877777652 257999999998 321 1345555 555443
Q ss_pred hhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHH-HHHHHHHHHHHcccCCCEEEEeec
Q psy1489 122 PDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQ-LAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 122 ~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~-~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
-++. ..+.||.|+.|..- + +....-. -.......+.+.|+++|.+++..-
T Consensus 358 -----wlr~--a~~~fD~vIVDl~D-P------~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 358 -----WLRT--AADMFDVVIVDLPD-P------STPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred -----HHHh--hcccccEEEEeCCC-C------CCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 1221 24589999998752 1 1111111 123567789999999999998653
No 272
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.29 E-value=0.098 Score=45.98 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=56.8
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+++|++||=+|+|+ |..+..+++..+ ..+|+++|.++- ..--++..+ -|..+.+....+.....
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G---------~~~Vi~~~~~~~r~~~a~~~Ga~~~--i~~~~~~~~~~i~~~~~ 257 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAG---------ASQVVAVDLNEDKLALARELGATAT--VNAGDPNAVEQVRELTG 257 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCcEEEEcCCHHHHHHHHHcCCceE--eCCCchhHHHHHHHHhC
Confidence 56789999999876 555566666543 236999998761 011122211 12233333444544443
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
+ .+|+|+-.. |. ...+..+.+.|+++|++++.-
T Consensus 258 ~-g~d~vid~~-----G~------------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 258 G-GVDYAFEMA-----GS------------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred C-CCCEEEECC-----CC------------hHHHHHHHHHHhcCCEEEEEc
Confidence 3 799999622 11 124556788899999988643
No 273
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.19 E-value=0.081 Score=48.62 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=66.6
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCC-CCeEEecCCCCChhHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPID-GAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~-~~~~~~~~D~~~~~~~~~ 127 (229)
.+..+|.|-+||+|++.....+.++... ....++|.|+++. ..++ .+... .+|-...+....
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~-----~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~-~~dtl~~~~~~~ 258 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQ-----DEIFIYGQEINDTTYRLAKMNLILHGIEGDANIR-HGDTLSNPKHDD 258 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhc-----cceeEEEEeCCHHHHHHHHHHHHHhCCCcccccc-ccccccCCcccc
Confidence 5678999999999999888888875211 0367899998751 1122 12222 333221111000
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCccc------H----H---HHHHHH-HHHHHHHHHcccCCCEEEEeecC
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMD------H----D---LITQLA-IAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d------~----~---~~~~~~-~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
....+.||.|+++++....+..... . . ..-.-. ...+..+...|+|||+..+.+..
T Consensus 259 ---~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 259 ---KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred ---cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 1234679999999986422211110 0 0 000011 35677888999999977665543
No 274
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.94 E-value=0.6 Score=37.50 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=69.8
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC----CCCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY----PIDGAVVLSKCDFTQPDIQDRLVTILKDD 135 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~~ 135 (229)
...|++.|..-|+-+...|...-+.| ...+|+++|++- .. ..+++.++ +++-+++.+...+...-.+.
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~G-----q~~kvl~vdIdi~~~~p~a~e~p~i~f~-egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIG-----QPFKVLGVDIDIKPLDPAAREVPDILFI-EGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcC-----CCceEEEEecccCcCChhhhcCCCeEEE-eCCCCCHHHHHHHHHHhcCC
Confidence 36899999999998888776442111 235899999874 21 25789999 99999998877776543222
Q ss_pred CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+-=+|+.|. .++++..++.|+....+|..|-.+++.
T Consensus 144 ~kIfvilDs------------dHs~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 144 PKIFVILDS------------DHSMEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred CcEEEEecC------------CchHHHHHHHHHHhhhHhhcCceEEEe
Confidence 212222322 233445667788888888888888765
No 275
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.90 E-value=0.14 Score=44.26 Aligned_cols=96 Identities=21% Similarity=0.195 Sum_probs=54.7
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+.+|++||=+|+|+ |.++..+++..+ ..+|+++|.++. .. --++..+ -|..+.+ ...+.+...
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G---------~~~vi~~~~~~~~~~~~~~~ga~~~--i~~~~~~-~~~~~~~~~ 228 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALG---------AEDVIGVDPSPERLELAKALGADFV--INSGQDD-VQEIRELTS 228 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHhCCCEE--EcCCcch-HHHHHHHhC
Confidence 45789999998765 445555566543 223899987751 00 0122211 1222322 333444445
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+..+|+|+..... ...+..+.+.|+++|++++-
T Consensus 229 ~~~~d~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 229 GAGADVAIECSGN-----------------TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCCCEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence 5579999963211 12345577889999999864
No 276
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.61 E-value=0.018 Score=50.13 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=16.8
Q ss_pred HHHHHHHcccCCCEEEEeecCCC
Q psy1489 166 VIRFAVTYSKPGADCLIKIWDGR 188 (229)
Q Consensus 166 ~l~~~~~~LkpgG~~v~~~~~~~ 188 (229)
.++....++.|||.+|+..-..+
T Consensus 207 ~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 207 NIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred HHHHHHHhccCCCeEEEEeCCCc
Confidence 45667888999999998654333
No 277
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.55 E-value=0.025 Score=43.60 Aligned_cols=47 Identities=13% Similarity=0.322 Sum_probs=35.3
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
..+.++++|+|++ .+.++|+.. +.-..++++++++|||||.+-+.+.
T Consensus 41 ~~F~dns~d~iya--------eHvlEHlt~-~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 41 SMFEDNSVDAIYA--------EHVLEHLTY-DEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred ccCCCcchHHHHH--------HHHHHHHhH-HHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 3477889999998 344555444 3345789999999999999988764
No 278
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.25 E-value=0.18 Score=43.85 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=52.6
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL 137 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~ 137 (229)
.++|++||-+|||+ |.++..++++.. ...+|+++|.++ ..++-+... ..+... +.+ ..+..+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~--------g~~~vi~~~~~~-~k~~~a~~~-~~~~~~----~~~---~~~~g~ 223 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIY--------PESKLVVFGKHQ-EKLDLFSFA-DETYLI----DDI---PEDLAV 223 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhc--------CCCcEEEEeCcH-hHHHHHhhc-Cceeeh----hhh---hhccCC
Confidence 46799999999987 545555565431 235899999876 111111101 111000 011 112258
Q ss_pred cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 138 D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
|+|+-.. |-.. ....+..+.+.|++||++++.-
T Consensus 224 d~viD~~-----G~~~---------~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 224 DHAFECV-----GGRG---------SQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred cEEEECC-----CCCc---------cHHHHHHHHHhCcCCcEEEEEe
Confidence 9998522 2110 0235667889999999998643
No 279
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.16 E-value=0.2 Score=42.34 Aligned_cols=33 Identities=21% Similarity=0.105 Sum_probs=26.6
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
...+||-=|||-|.++-.+|.+ | -.+.|+|.|-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G----------~~~~gnE~S~ 88 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-G----------YAVQGNEFSY 88 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-c----------ceEEEEEchH
Confidence 3578999999999999998876 3 4777888773
No 280
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.13 E-value=0.053 Score=46.69 Aligned_cols=75 Identities=24% Similarity=0.390 Sum_probs=47.3
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CC----CCCCeEEecCCCCChhHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YP----IDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~----~~~~~~~~~~D~~~~~~~~~i 128 (229)
.+++..++|.=.|.||.|..+++.. +.++|+|+|.++. .. -.++.++ .+++.+... .+
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~---------~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~-~~~F~~l~~--~l 85 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKL---------PNGRLIGIDRDPEALERAKERLKKFDDRFIFI-HGNFSNLDE--YL 85 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT----------TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEE-ES-GGGHHH--HH
T ss_pred cCCCceEEeecCCcHHHHHHHHHhC---------CCCeEEEecCCHHHHHHHHHHHhhccceEEEE-eccHHHHHH--HH
Confidence 4678899999999999999999987 4599999999871 11 2467788 888777432 22
Q ss_pred HHHhCCCCccEEEeCCC
Q psy1489 129 VTILKDDKLDVVLSDMA 145 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~ 145 (229)
.....-..+|.|+.|..
T Consensus 86 ~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 86 KELNGINKVDGILFDLG 102 (310)
T ss_dssp HHTTTTS-EEEEEEE-S
T ss_pred HHccCCCccCEEEEccc
Confidence 22213458999999874
No 281
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.04 E-value=0.27 Score=41.99 Aligned_cols=95 Identities=20% Similarity=0.171 Sum_probs=55.9
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
++++.+||..|+|+ |..+..+++..+ .+|++++.++- ..+ .++..+ ..+ .+......+ ....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G----------~~V~~~~~s~~~~~~~~~~g~~~~-~~~-~~~~~~~~~-~~~~ 229 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMG----------AAVIAVDIKEEKLELAKELGADEV-LNS-LDDSPKDKK-AAGL 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC----------CEEEEEcCCHHHHHHHHHhCCCEE-EcC-CCcCHHHHH-HHhc
Confidence 56788999987764 666666676654 57889887751 000 122222 111 121222223 3355
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+..+|+|+..... ...+..+.+.|+++|+++..
T Consensus 230 ~~~~D~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDFVGT-----------------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCCceEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence 6789999863211 13456688999999999864
No 282
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.93 E-value=0.32 Score=40.93 Aligned_cols=95 Identities=22% Similarity=0.196 Sum_probs=54.5
Q ss_pred CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
.+|++||-+|+|+ |..+..+++..+ ..+|+++|.++.. .--++... -|..+. ...+.+...+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G---------~~~Vi~~~~~~~r~~~a~~~Ga~~~--i~~~~~--~~~~~~~~~~ 185 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAG---------AARVVAADPSPDRRELALSFGATAL--AEPEVL--AERQGGLQNG 185 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHcCCcEe--cCchhh--HHHHHHHhCC
Confidence 4789999998876 555555666543 2358888877511 01122221 121121 2223333344
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
..+|+|+--. |. ...+..+.+.|+++|++++.-
T Consensus 186 ~g~d~vid~~-----G~------------~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 186 RGVDVALEFS-----GA------------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCCEEEECC-----CC------------hHHHHHHHHHhcCCCEEEEec
Confidence 5799998732 11 134566888999999998644
No 283
>PLN02740 Alcohol dehydrogenase-like
Probab=93.88 E-value=0.48 Score=41.80 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=54.8
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCC--hhHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQ--PDIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~--~~~~~~i~~ 130 (229)
+++|++||-+|+|+ |..+..+++..+ ..+|+++|.++. . .--++. ++ |..+ .+....+.+
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G---------~~~Vi~~~~~~~r~~~a~~~Ga~~~i---~~~~~~~~~~~~v~~ 263 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARG---------ASKIIGVDINPEKFEKGKEMGITDFI---NPKDSDKPVHERIRE 263 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC---------CCcEEEEcCChHHHHHHHHcCCcEEE---ecccccchHHHHHHH
Confidence 56799999999876 556666666653 236999998761 1 001222 22 2222 122333444
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEe
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIK 183 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~ 183 (229)
...+ .+|+|+--. |. ...+..+...+++| |++++.
T Consensus 264 ~~~~-g~dvvid~~-----G~------------~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 264 MTGG-GVDYSFECA-----GN------------VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred HhCC-CCCEEEECC-----CC------------hHHHHHHHHhhhcCCCEEEEE
Confidence 3333 799998732 21 12455677788897 988764
No 284
>PRK08177 short chain dehydrogenase; Provisional
Probab=93.64 E-value=1.6 Score=35.23 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=49.7
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----CCCCCeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D 138 (229)
+||=.|+ +|+++..+++++.. ...+|++++.++.. ...++.+. ..|+.+.+....+.+.+.++.+|
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~D~~d~~~~~~~~~~~~~~~id 73 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLE-------RGWQVTATVRGPQQDTALQALPGVHIE-KLDMNDPASLDQLLQRLQGQRFD 73 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHh-------CCCEEEEEeCCCcchHHHHhccccceE-EcCCCCHHHHHHHHHHhhcCCCC
Confidence 5666666 57777777776642 22489999987621 12356677 89999987666565556556899
Q ss_pred EEEeCCC
Q psy1489 139 VVLSDMA 145 (229)
Q Consensus 139 ~V~sd~~ 145 (229)
+|+.+..
T Consensus 74 ~vi~~ag 80 (225)
T PRK08177 74 LLFVNAG 80 (225)
T ss_pred EEEEcCc
Confidence 9998764
No 285
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.63 E-value=0.51 Score=40.91 Aligned_cols=96 Identities=20% Similarity=0.289 Sum_probs=55.5
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+++|++||-.|+|+ |..+..+++..+ ...|+++|.++. ..--++..+ -|..+.+....+.....
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G---------~~~v~~~~~~~~~~~~~~~~g~~~~--v~~~~~~~~~~i~~~~~ 232 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRG---------AGRIIAVGSRPNRVELAKEYGATDI--VDYKNGDVVEQILKLTG 232 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHcCCceE--ecCCCCCHHHHHHHHhC
Confidence 56789999998765 455555666553 236888888751 001122211 12222233334444455
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+..+|+|+.... . ...+..+.+.|+++|+++.
T Consensus 233 ~~~~d~vld~~g-----~------------~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 233 GKGVDAVIIAGG-----G------------QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred CCCCcEEEECCC-----C------------HHHHHHHHHHhhcCCEEEE
Confidence 567999996321 0 1245667888999999885
No 286
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.62 E-value=0.24 Score=42.02 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=58.5
Q ss_pred CeeEeecCCCCchH-HHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------C-----CCCCeEEecCCCCChhHHHHH
Q psy1489 63 LKVLDCGAAPGSWS-QVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------P-----IDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 63 ~~VLDlGcGpG~~s-~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------~-----~~~~~~~~~~D~~~~~~~~~i 128 (229)
.+|+=|||||==+| +.++++.+ +...|+++|+++-. . -.++.++ .+|..+..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~--------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~-~~d~~~~~----- 187 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHG--------PGARVHNIDIDPEANELARRLVASDLGLSKRMSFI-TADVLDVT----- 187 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HT--------T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEE-ES-GGGG------
T ss_pred ceEEEEcCCCcchHHHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEE-ecchhccc-----
Confidence 59999999996555 55555554 45689999999721 1 1356788 88876532
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHH-H----hhCCe
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI-T----RFYSQ 203 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l-~----~~F~~ 203 (229)
.+-..||+|+..+.. |. +. +.-.+++....+.++||..+++.--.+- ..+++-. . .-|+.
T Consensus 188 ---~dl~~~DvV~lAalV---g~---~~----e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl--R~~LYp~vd~~~l~gf~~ 252 (276)
T PF03059_consen 188 ---YDLKEYDVVFLAALV---GM---DA----EPKEEILEHLAKHMAPGARLVVRSAHGL--RSFLYPVVDPEDLRGFEV 252 (276)
T ss_dssp ---GG----SEEEE-TT----S-----------SHHHHHHHHHHHS-TTSEEEEEE--GG--GGGSS----TGGGTTEEE
T ss_pred ---cccccCCEEEEhhhc---cc---cc----chHHHHHHHHHhhCCCCcEEEEecchhh--HHHcCCCCChHHCCCeEE
Confidence 112479999985532 11 11 1124678889999999999988743322 1111111 1 13777
Q ss_pred eEEEcCC
Q psy1489 204 VKILKPP 210 (229)
Q Consensus 204 v~~~kp~ 210 (229)
..++.|.
T Consensus 253 ~~~~hP~ 259 (276)
T PF03059_consen 253 LAVVHPT 259 (276)
T ss_dssp EEEE---
T ss_pred EEEECCC
Confidence 7777775
No 287
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.56 E-value=0.29 Score=39.32 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=32.1
Q ss_pred ccEEEeCCCCCCCCC--------CcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 137 LDVVLSDMAPNATGM--------REMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 137 ~D~V~sd~~~~~~g~--------~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
+|+|+.|++-+.... ...+....+..+...+.++.++|||||.+++.+-.
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecc
Confidence 488999887543222 11224455667788999999999999999886643
No 288
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.46 E-value=0.064 Score=39.47 Aligned_cols=86 Identities=19% Similarity=0.241 Sum_probs=56.0
Q ss_pred CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCC
Q psy1489 73 GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNA 148 (229)
Q Consensus 73 G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~ 148 (229)
|.++..+++..| .+|+++|.++- . .--++..+ .|..+.+..+.+.+..++..+|+|+--.
T Consensus 3 G~~a~q~ak~~G----------~~vi~~~~~~~k~~~~~~~Ga~~~--~~~~~~~~~~~i~~~~~~~~~d~vid~~---- 66 (130)
T PF00107_consen 3 GLMAIQLAKAMG----------AKVIATDRSEEKLELAKELGADHV--IDYSDDDFVEQIRELTGGRGVDVVIDCV---- 66 (130)
T ss_dssp HHHHHHHHHHTT----------SEEEEEESSHHHHHHHHHTTESEE--EETTTSSHHHHHHHHTTTSSEEEEEESS----
T ss_pred HHHHHHHHHHcC----------CEEEEEECCHHHHHHHHhhccccc--ccccccccccccccccccccceEEEEec----
Confidence 567777787763 79999999861 1 11122222 2333444566677777667899999733
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489 149 TGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187 (229)
Q Consensus 149 ~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~ 187 (229)
|. ...+..+...|+++|++++.-...
T Consensus 67 -g~------------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 67 -GS------------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -SS------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred -Cc------------HHHHHHHHHHhccCCEEEEEEccC
Confidence 21 246677889999999998865544
No 289
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.43 E-value=1.1 Score=34.99 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=40.1
Q ss_pred CCCCccEEEeCCCCCCCCCCcc--cHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489 133 KDDKLDVVLSDMAPNATGMREM--DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~--d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~ 188 (229)
....||.|+-+.+....+..+. +...+.+++...+..|..+|+++|.+.+....+.
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~ 129 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ 129 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 5678999999987543222221 1223445778899999999999999998876653
No 290
>PLN02827 Alcohol dehydrogenase-like
Probab=93.41 E-value=0.79 Score=40.49 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=54.6
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCC--hhHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQ--PDIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~--~~~~~~i~~ 130 (229)
+++|++||-.|+|+ |..+..+++..+ ...|+++|.++- . .--++. ++ |..+ .+....+.+
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G---------~~~vi~~~~~~~~~~~a~~lGa~~~i---~~~~~~~~~~~~v~~ 258 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRG---------ASQIIGVDINPEKAEKAKTFGVTDFI---NPNDLSEPIQQVIKR 258 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEECCCHHHHHHHHHcCCcEEE---cccccchHHHHHHHH
Confidence 56799999998866 555555666543 236888887651 0 111232 22 2222 123333444
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEe
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIK 183 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~ 183 (229)
.... .+|+|+-.. |. ...+..+.+.|++| |++++.
T Consensus 259 ~~~~-g~d~vid~~-----G~------------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 259 MTGG-GADYSFECV-----GD------------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred HhCC-CCCEEEECC-----CC------------hHHHHHHHHhhccCCCEEEEE
Confidence 4433 799999632 21 12455678889998 999763
No 291
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.40 E-value=0.35 Score=41.91 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=53.1
Q ss_pred CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
.+|++||-.|||+ |..+..+++..+ ..+|+++|.++- . .--++..+ -|..+.+.. .+.. ..
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G---------~~~Vi~~~~~~~~~~~a~~lGa~~v--i~~~~~~~~-~~~~--~~ 233 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLG---------AAEIVCADVSPRSLSLAREMGADKL--VNPQNDDLD-HYKA--EK 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEEeCCHHHHHHHHHcCCcEE--ecCCcccHH-HHhc--cC
Confidence 3689999999876 556666666553 237899998761 1 01123221 122222211 1211 12
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
+.+|+|+... |. ...+..+.+.|++||++++.-
T Consensus 234 g~~D~vid~~-----G~------------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 234 GYFDVSFEVS-----GH------------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred CCCCEEEECC-----CC------------HHHHHHHHHHhhcCCEEEEEc
Confidence 3599998732 21 123456788899999998743
No 292
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=93.39 E-value=0.49 Score=41.00 Aligned_cols=96 Identities=18% Similarity=0.228 Sum_probs=54.2
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~~~~~~~i~~~~ 132 (229)
..+|++||=+|+|+ |..+..+++..+ ...|+++|.++. . .--++. ++ |..+.. ...+....
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G---------~~~v~~~~~~~~~~~~~~~~Ga~~~i---~~~~~~-~~~~~~~~ 224 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALG---------AKSVTAIDINSEKLALAKSLGAMQTF---NSREMS-APQIQSVL 224 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEECCCHHHHHHHHHcCCceEe---cCcccC-HHHHHHHh
Confidence 45789999999876 555566666653 234788887651 0 001222 22 211211 22344445
Q ss_pred CCCCcc-EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 133 KDDKLD-VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 133 ~~~~~D-~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
.+..+| +|+- .. |. ...+..+.+.|++||++++.-
T Consensus 225 ~~~~~d~~v~d-~~----G~------------~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 225 RELRFDQLILE-TA----GV------------PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred cCCCCCeEEEE-CC----CC------------HHHHHHHHHHhhcCCEEEEEc
Confidence 556788 5543 21 21 134566888999999998753
No 293
>PRK06398 aldose dehydrogenase; Validated
Probab=93.28 E-value=2.7 Score=34.77 Aligned_cols=76 Identities=9% Similarity=0.121 Sum_probs=49.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhC--CCCcc
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILK--DDKLD 138 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~--~~~~D 138 (229)
.|+++|-.|+ +|+++..+++.+.. ...+|+.++.++ .....+.++ +.|+.++.....+.+.+. -+.+|
T Consensus 5 ~gk~vlItGa-s~gIG~~ia~~l~~-------~G~~Vi~~~r~~-~~~~~~~~~-~~D~~~~~~i~~~~~~~~~~~~~id 74 (258)
T PRK06398 5 KDKVAIVTGG-SQGIGKAVVNRLKE-------EGSNVINFDIKE-PSYNDVDYF-KVDVSNKEQVIKGIDYVISKYGRID 74 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-------CCCeEEEEeCCc-cccCceEEE-EccCCCHHHHHHHHHHHHHHcCCCC
Confidence 3678888885 56677777766642 235888888765 223357778 899999765443332221 14689
Q ss_pred EEEeCCCC
Q psy1489 139 VVLSDMAP 146 (229)
Q Consensus 139 ~V~sd~~~ 146 (229)
+++.++..
T Consensus 75 ~li~~Ag~ 82 (258)
T PRK06398 75 ILVNNAGI 82 (258)
T ss_pred EEEECCCC
Confidence 99987653
No 294
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.21 E-value=0.41 Score=41.59 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=27.1
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
+++|++||-+|||+ |..+..+++..+ .+|+++|.++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G----------~~vi~~~~~~ 200 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMG----------AAVVAIDIDP 200 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----------CeEEEEcCCH
Confidence 46789999999966 666666666653 4789998876
No 295
>KOG1209|consensus
Probab=93.12 E-value=1.8 Score=35.49 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=54.9
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCC--CCCCCC---CCeEEecCCCCChhHHHHHHH---HhC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL--PIYPID---GAVVLSKCDFTQPDIQDRLVT---ILK 133 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~--~~~~~~---~~~~~~~~D~~~~~~~~~i~~---~~~ 133 (229)
...||-.||..|+++-.+++.... ....|++.-.+ +|..+. ++... .-|+.+++-...... ..+
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~-------~G~~V~AtaR~~e~M~~L~~~~gl~~~-kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFAR-------NGYLVYATARRLEPMAQLAIQFGLKPY-KLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHh-------CCeEEEEEccccchHhhHHHhhCCeeE-EeccCChHHHHHHHHHHhhCC
Confidence 468999999999999999987652 23578887654 355443 56666 788887653322221 246
Q ss_pred CCCccEEEeCCCCCCC
Q psy1489 134 DDKLDVVLSDMAPNAT 149 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~ 149 (229)
+++.|+.+.|+.-.|+
T Consensus 79 ~Gkld~L~NNAG~~C~ 94 (289)
T KOG1209|consen 79 DGKLDLLYNNAGQSCT 94 (289)
T ss_pred CCceEEEEcCCCCCcc
Confidence 7899999998864443
No 296
>KOG2360|consensus
Probab=92.98 E-value=0.11 Score=45.62 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=56.0
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------CCCCCCeEEecCCCCChhHHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~~~~~~~~~~~~D~~~~~~~~~i 128 (229)
.+|.+|+|.||.||.-+.+++.... ..+++.|.|.++- .....++.. .+|++...+..
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~--------n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~-~~df~~t~~~~-- 280 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMR--------NQGKIYAFERDAKRAATLRKLLKIAGVSIVESV-EGDFLNTATPE-- 280 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhh--------ccCCcchhhhhhHHHHHHHHHHHHcCCCccccc-cccccCCCCcc--
Confidence 4689999999999999999998775 5789999999861 112334444 56666521111
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcc
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREM 154 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~ 154 (229)
.=..+..|++|.+...+|++..
T Consensus 281 ----~~~~v~~iL~DpscSgSgm~~r 302 (413)
T KOG2360|consen 281 ----KFRDVTYILVDPSCSGSGMVSR 302 (413)
T ss_pred ----cccceeEEEeCCCCCCCccccc
Confidence 1134678999998877777654
No 297
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=92.94 E-value=0.14 Score=51.33 Aligned_cols=92 Identities=21% Similarity=0.311 Sum_probs=56.3
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee-cCCCC-hHHHHHHHHhhCCeeEEEc
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI-WDGRN-RPQLEESITRFYSQVKILK 208 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~-~~~~~-~~~~~~~l~~~F~~v~~~k 208 (229)
.++.+.|.+|.||.---..|..+.+ ..-+.....+..+..+..+||.+++|+ |.... +..+...+..+|..+.+.|
T Consensus 564 p~pTGtf~fVYSDVDQV~dg~~dl~--As~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~vW~~if~~~s~~~~~~~ivK 641 (1289)
T PF06016_consen 564 PFPTGTFTFVYSDVDQVQDGGDDLV--ASNRAAISQLDVALQMTTAGGSTVVKINFPTRAVWTQIFRQYSPRFTSYHIVK 641 (1289)
T ss_dssp --S---EEEEEEE-----SSTTTHH--HHHHHHHHHHHHHHHHEEEEEEEEEEESS--CCHHHHHHHHCCCCECEEEEEE
T ss_pred CCCCCceEEEEecchhhccCCcchh--hhhHHHHHHHHHHHHhhcCCceEEEEEcCCChHHHHHHHHHhccccceeeEec
Confidence 3778899999998743222322322 223445577888999999999999998 44433 3445555666789999999
Q ss_pred CCCCCCCCceEEEEeccC
Q psy1489 209 PPSSRSHSAELFLLGRGF 226 (229)
Q Consensus 209 p~~sr~~s~E~Y~v~~~~ 226 (229)
|- -.+|.|.|+|.-+.
T Consensus 642 Pl--I~NNvEvflv~~~~ 657 (1289)
T PF06016_consen 642 PL--IVNNVEVFLVFGGR 657 (1289)
T ss_dssp EE--SSSS--EEEEECEC
T ss_pred ce--eecceEEEEEEEee
Confidence 84 46899999996554
No 298
>KOG4022|consensus
Probab=92.93 E-value=3.7 Score=32.25 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=60.7
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCC--CCCh--hHHHHHHHHhCCCCcc
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD--FTQP--DIQDRLVTILKDDKLD 138 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D--~~~~--~~~~~i~~~~~~~~~D 138 (229)
.+|+-.| |-|.+.....+.... .+.-|..||+++-+....-.++ .+| +++. .+..+.-+.+.++++|
T Consensus 4 grVivYG-GkGALGSacv~~Fka-------nnywV~siDl~eNe~Ad~sI~V-~~~~swtEQe~~v~~~vg~sL~gekvD 74 (236)
T KOG4022|consen 4 GRVIVYG-GKGALGSACVEFFKA-------NNYWVLSIDLSENEQADSSILV-DGNKSWTEQEQSVLEQVGSSLQGEKVD 74 (236)
T ss_pred ceEEEEc-CcchHhHHHHHHHHh-------cCeEEEEEeecccccccceEEe-cCCcchhHHHHHHHHHHHHhhcccccc
Confidence 3566554 778888777776542 3457999999873322211122 222 2221 1223344457789999
Q ss_pred EEEeCCCCCCCCCCc-ccHHHHHHHH--------HHHHHHHHHcccCCCEEEEe
Q psy1489 139 VVLSDMAPNATGMRE-MDHDLITQLA--------IAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 139 ~V~sd~~~~~~g~~~-~d~~~~~~~~--------~~~l~~~~~~LkpgG~~v~~ 183 (229)
.|+|-+.-...|.-. .|-....++. ...-..+..+|||||.+-+.
T Consensus 75 av~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~Lt 128 (236)
T KOG4022|consen 75 AVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLT 128 (236)
T ss_pred eEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeec
Confidence 999966433323211 1211111111 12235577899999998653
No 299
>KOG2651|consensus
Probab=92.88 E-value=0.18 Score=44.45 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=30.3
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
+.+-+.|+|+|+|+|.++..++-.++ -.|.|||-+.
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~----------lsV~aIegsq 186 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYG----------LSVKAIEGSQ 186 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccC----------ceEEEeccch
Confidence 44557999999999999999987764 5899999984
No 300
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.80 E-value=3.4 Score=34.14 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=50.5
Q ss_pred CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C----CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y----PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~----~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.|+.+|-.|+++ ++++..+++.+.. ...+|+.++.+.- . .+..+.++ +.|+.+.+....+.+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~-------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA-------LGAELAVTYLNDKARPYVEPLAEELDAPIFL-PLDVREPGQLEAVFA 80 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-------cCCEEEEEeCChhhHHHHHHHHHhhccceEE-ecCcCCHHHHHHHHH
Confidence 478899999998 4888888877642 2247777776631 0 12234567 899998765544333
Q ss_pred HhC--CCCccEEEeCCCC
Q psy1489 131 ILK--DDKLDVVLSDMAP 146 (229)
Q Consensus 131 ~~~--~~~~D~V~sd~~~ 146 (229)
.+. -+..|+++.++..
T Consensus 81 ~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHHcCCCCEEEEcCcc
Confidence 221 1478999998753
No 301
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=92.73 E-value=0.7 Score=41.28 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=56.6
Q ss_pred cCCCCeeEeec-CCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----CCC-C------CCeEEecCCCCC-hh
Q psy1489 59 LRPGLKVLDCG-AAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----YPI-D------GAVVLSKCDFTQ-PD 123 (229)
Q Consensus 59 ~~~g~~VLDlG-cGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~~~-~------~~~~~~~~D~~~-~~ 123 (229)
+++|++||=+| +|+ |..+..+++..+. ...+|+++|.++. ..+ . ++... .-|..+ .+
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~-------g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~-~i~~~~~~~ 244 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPI-------GPSLLVVTDVNDERLARAQRLFPPEAASRGIELL-YVNPATIDD 244 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhccc-------CCceEEEEcCCHHHHHHHHHhccccccccCceEE-EECCCcccc
Confidence 46789999997 576 6666666766420 1237999998751 111 0 33211 112222 22
Q ss_pred HHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 124 ~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
....+.+...+..+|+|+.... . ...+..+.+.|+++|.+++.
T Consensus 245 ~~~~v~~~t~g~g~D~vid~~g-----~------------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 245 LHATLMELTGGQGFDDVFVFVP-----V------------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHHHHHhCCCCCCEEEEcCC-----C------------HHHHHHHHHHhccCCeEEEE
Confidence 3333444445567999887321 0 13456678889999987653
No 302
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.63 E-value=1.1 Score=36.66 Aligned_cols=97 Identities=23% Similarity=0.312 Sum_probs=54.9
Q ss_pred CccCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHH
Q psy1489 57 KFLRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 57 ~~~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
..+.++.+||..|+|+ |.....+++..+ .+|++++.++- ..+ .+...+ -|..+......+. .
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~-~ 196 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG----------ARVIVTDRSDEKLELAKELGADHV--IDYKEEDLEEELR-L 196 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC----------CeEEEEcCCHHHHHHHHHhCCcee--ccCCcCCHHHHHH-H
Confidence 3346789999999987 444455555442 68899988751 000 111111 1222222222232 3
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.....+|+|+..... . ..+..+.+.|+++|+++.-
T Consensus 197 ~~~~~~d~vi~~~~~---------~--------~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 197 TGGGGADVVIDAVGG---------P--------ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred hcCCCCCEEEECCCC---------H--------HHHHHHHHhcccCCEEEEE
Confidence 445679999974321 0 2344567788999999863
No 303
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.62 E-value=1.4 Score=36.09 Aligned_cols=111 Identities=12% Similarity=0.008 Sum_probs=57.6
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC----------------------------------
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY---------------------------------- 106 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~---------------------------------- 106 (229)
.-++-|=|||.|.+...+.-..+. .-..|+|.|+++ +.
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~-------~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~ 124 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRR-------RLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSH 124 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGG-------GEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhH-------HHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchH
Confidence 458899999999988777654320 124799999985 10
Q ss_pred ------------------CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHH
Q psy1489 107 ------------------PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIR 168 (229)
Q Consensus 107 ------------------~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~ 168 (229)
...-.... +.|++++....... .....|+|+.|.+-.-.-.|..+ ..-.-....|.
T Consensus 125 ~eAl~sA~RL~~~l~~~g~~~p~~~~-~aDvf~~~~~~~~~---~~~~~diViTDlPYG~~t~W~g~--~~~~p~~~ml~ 198 (246)
T PF11599_consen 125 AEALESADRLRERLAAEGGDEPHAIF-RADVFDPSPLAVLD---AGFTPDIVITDLPYGEMTSWQGE--GSGGPVAQMLN 198 (246)
T ss_dssp HHHHHHHHHHHHHHHHTTSS--EEEE-E--TT-HHHHHHHH---TT---SEEEEE--CCCSSSTTS-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhhe-eecccCCchhhhhc---cCCCCCEEEecCCCcccccccCC--CCCCcHHHHHH
Confidence 00112355 88999987655443 23457999999875222222221 22233456778
Q ss_pred HHHHcccCCCEEEEeecC
Q psy1489 169 FAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 169 ~~~~~LkpgG~~v~~~~~ 186 (229)
....+| |+..+|+....
T Consensus 199 ~l~~vL-p~~sVV~v~~k 215 (246)
T PF11599_consen 199 SLAPVL-PERSVVAVSDK 215 (246)
T ss_dssp HHHCCS--TT-EEEEEES
T ss_pred HHHhhC-CCCcEEEEecC
Confidence 888999 66666654433
No 304
>KOG2352|consensus
Probab=92.57 E-value=0.7 Score=42.02 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=67.7
Q ss_pred CCCC-eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C-----CCCCCeEEecCCCCChhHHHHH
Q psy1489 60 RPGL-KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y-----PIDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 60 ~~g~-~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~-----~~~~~~~~~~~D~~~~~~~~~i 128 (229)
.+-. ++|-+|||-=.++..+-+- +-..|+-+|+|+. . ..+...+. ..|++..
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~----------G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~-~~d~~~l------ 108 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKN----------GFEDITNIDSSSVVVAAMQVRNAKERPEMQMV-EMDMDQL------ 108 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhc----------CCCCceeccccHHHHHHHHhccccCCcceEEE-Eecchhc------
Confidence 3444 8999999988776664432 2347999999972 1 12334555 6776653
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
.+++++||+|+.-+..+..-..+.+.+. ......-+.+..++|++||+++...+
T Consensus 109 --~fedESFdiVIdkGtlDal~~de~a~~~-~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 109 --VFEDESFDIVIDKGTLDALFEDEDALLN-TAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred --cCCCcceeEEEecCccccccCCchhhhh-hHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 2778999999986654332211222221 13445678889999999999876554
No 305
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.43 E-value=0.47 Score=42.68 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=51.1
Q ss_pred CccCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489 57 KFLRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 57 ~~~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
++.-+|++|+-+|||+ |.....+++..| .+|+.+|.++.. ...++... .. .+.
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~G----------a~ViV~d~d~~R~~~A~~~G~~~~------~~------~e~ 254 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQG----------ARVIVTEVDPICALQAAMEGYEVM------TM------EEA 254 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEECChhhHHHHHhcCCEEc------cH------HHH
Confidence 4445799999999999 544455555543 589999998721 11233222 11 112
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHH-HHHcccCCCEEEEe
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRF-AVTYSKPGADCLIK 183 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~-~~~~LkpgG~~v~~ 183 (229)
+ ..+|+|+.. +|. ..++.. ..+.+++||.++..
T Consensus 255 v--~~aDVVI~a-----tG~------------~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 255 V--KEGDIFVTT-----TGN------------KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred H--cCCCEEEEC-----CCC------------HHHHHHHHHhcCCCCcEEEEe
Confidence 2 257999972 231 123333 37789999998764
No 306
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.41 E-value=0.71 Score=40.25 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=55.6
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCC---CCCCeEEecCCCCC-hhHHHHHHH
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYP---IDGAVVLSKCDFTQ-PDIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~---~~~~~~~~~~D~~~-~~~~~~i~~ 130 (229)
+++|++||=.|+ |+ |.++..+++..| .+|++++.++ ... --++..+ -|..+ .+....+..
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G----------~~Vi~~~~~~~k~~~~~~~lGa~~v--i~~~~~~~~~~~i~~ 223 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHG----------CYVVGSAGSSQKVDLLKNKLGFDEA--FNYKEEPDLDAALKR 223 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC----------CEEEEEcCCHHHHHHHHHhcCCCEE--EECCCcccHHHHHHH
Confidence 568999999998 43 667777777654 5788888765 111 1123221 12221 123333444
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.. ++.+|+|+... | ...+..+.+.|++||++++.
T Consensus 224 ~~-~~gvD~v~d~v-----G-------------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 224 YF-PEGIDIYFDNV-----G-------------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HC-CCCcEEEEECC-----C-------------HHHHHHHHHHhccCCEEEEE
Confidence 33 35799999622 1 02345678889999999864
No 307
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=92.34 E-value=0.59 Score=35.85 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=54.0
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCC---CCCCeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYP---IDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~---~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D 138 (229)
.-|||||-|.|.---+|.+.+ |+..|+..|..- ..+ .+.-.++ ++|+.+. ...+ ..+ +...-
T Consensus 30 G~VlElGLGNGRTydHLRe~~---------p~R~I~vfDR~l~~hp~~~P~~~~~i-lGdi~~t--l~~~-~~~-g~~a~ 95 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIF---------PDRRIYVFDRALACHPSSTPPEEDLI-LGDIRET--LPAL-ARF-GAGAA 95 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH-----------SS-EEEEESS--S-GGG---GGGEE-ES-HHHH--HHHH-HHH--S-EE
T ss_pred CceEEeccCCCccHHHHHHhC---------CCCeEEEEeeecccCCCCCCchHhee-eccHHHH--hHHH-Hhc-CCceE
Confidence 579999999999999999988 678999999753 111 1234566 8887652 2222 223 56678
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 139 ~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
++.+|... |.++. .......+-..+..+|.|||.++-
T Consensus 96 laHaD~G~---g~~~~----d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 96 LAHADIGT---GDKEK----DDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp EEEE-------S-HHH----HHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEeecCC---CCcch----hHHHHHhhhHHHHHHhcCCcEEEe
Confidence 88888743 33222 222233344557789999998874
No 308
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.22 E-value=0.24 Score=40.19 Aligned_cols=102 Identities=18% Similarity=0.131 Sum_probs=59.4
Q ss_pred eEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC---------C-CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY---------P-IDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 65 VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~---------~-~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
|.|+||--|.+..+|++.. ...+++++|+++ +. . ...+++. .+|-.+. +
T Consensus 1 vaDIGtDHgyLpi~L~~~~---------~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~r-lgdGL~~---------l 61 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG---------KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVR-LGDGLEV---------L 61 (205)
T ss_dssp EEEET-STTHHHHHHHHTT---------SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEE-E-SGGGG----------
T ss_pred CceeccchhHHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEE-ECCcccc---------c
Confidence 6899999999999999874 445899999996 21 1 1246666 6664331 2
Q ss_pred CCC-CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489 133 KDD-KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200 (229)
Q Consensus 133 ~~~-~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~ 200 (229)
+.+ ..|.|+..++ | - .+...+|......++..-.||+.- ......++..|...
T Consensus 62 ~~~e~~d~ivIAGM----G-----G----~lI~~ILe~~~~~~~~~~~lILqP--~~~~~~LR~~L~~~ 115 (205)
T PF04816_consen 62 KPGEDVDTIVIAGM----G-----G----ELIIEILEAGPEKLSSAKRLILQP--NTHAYELRRWLYEN 115 (205)
T ss_dssp -GGG---EEEEEEE----------H----HHHHHHHHHTGGGGTT--EEEEEE--SS-HHHHHHHHHHT
T ss_pred CCCCCCCEEEEecC----C-----H----HHHHHHHHhhHHHhccCCeEEEeC--CCChHHHHHHHHHC
Confidence 232 3676664332 1 1 234567777777777667787642 24456777777665
No 309
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=92.20 E-value=0.9 Score=40.46 Aligned_cols=110 Identities=19% Similarity=0.271 Sum_probs=58.0
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+.+|++||-.|+|+ |..+..+++..+ ...|+.+|.++- ..--++..+ .. -.+.+....+.+...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~G---------a~~vi~~d~~~~r~~~a~~~Ga~~v-~~-~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLG---------AAVVIVGDLNPARLAQARSFGCETV-DL-SKDATLPEQIEQILG 251 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CceEEEeCCCHHHHHHHHHcCCeEE-ec-CCcccHHHHHHHHcC
Confidence 46788998888877 555566666653 234666677641 011133322 11 111223333444444
Q ss_pred CCCccEEEeCCCCCCCCCCccc--HHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 134 DDKLDVVLSDMAPNATGMREMD--HDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d--~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
...+|+|+--. |....+ +..........+..+.+++++||++++.-
T Consensus 252 ~~g~Dvvid~~-----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 252 EPEVDCAVDCV-----GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred CCCCcEEEECC-----CCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 55799998632 211000 00000111246788899999999998743
No 310
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=92.18 E-value=1.4 Score=37.77 Aligned_cols=95 Identities=20% Similarity=0.344 Sum_probs=53.4
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----PIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
++++.+||..|+|. |..+..+++..+ ...+++++.++.. ......++ +..+......+....
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g---------~~~v~~~~~~~~~~~~~~~~g~~~vi---~~~~~~~~~~i~~~~ 232 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLG---------AARIIAVDSNPERLDLAKEAGATDII---NPKNGDIVEQILELT 232 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEeCCHHHHHHHHHhCCcEEE---cCCcchHHHHHHHHc
Confidence 46789999977643 445555566542 2378888765411 11111222 222333334454445
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+++.+|+|+..... ...+..+.+.|+++|+++.
T Consensus 233 ~~~~~d~vld~~g~-----------------~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 233 GGRGVDCVIEAVGF-----------------EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred CCCCCcEEEEccCC-----------------HHHHHHHHHHhhcCCEEEE
Confidence 55679999963211 0245667788999999875
No 311
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=92.15 E-value=0.53 Score=41.28 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=52.7
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-----CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-----IDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-----~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+++|++||-.|+|+ |.++..+++..+ .+|++++.++-.. --++..+ . +..+. ..+....
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G----------a~vi~~~~~~~~~~~~~~~~Ga~~v-i-~~~~~---~~~~~~~ 245 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG----------LKVTVISSSSNKEDEAINRLGADSF-L-VSTDP---EKMKAAI 245 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEeCCcchhhhHHHhCCCcEE-E-cCCCH---HHHHhhc
Confidence 46789999999876 666666666654 4788887765111 1133221 1 11221 1233322
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+.+|+|+--. |. ...+..+.+.|++||++++.
T Consensus 246 --~~~D~vid~~-----g~------------~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 246 --GTMDYIIDTV-----SA------------VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred --CCCCEEEECC-----CC------------HHHHHHHHHHhcCCcEEEEe
Confidence 2589998622 21 12455678889999998864
No 312
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=92.14 E-value=0.11 Score=42.90 Aligned_cols=69 Identities=26% Similarity=0.344 Sum_probs=40.2
Q ss_pred cCCCC--eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-C--------------CC-----CCCeEEec
Q psy1489 59 LRPGL--KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-Y--------------PI-----DGAVVLSK 116 (229)
Q Consensus 59 ~~~g~--~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~--------------~~-----~~~~~~~~ 116 (229)
+++|. +|||.=+|-|.-+..++. +| ++|++++.+|. . .. .+++++ .
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~-~G----------~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~-~ 138 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLAS-LG----------CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI-H 138 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHH-HT------------EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE-E
T ss_pred CCCCCCCEEEECCCcchHHHHHHHc-cC----------CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE-c
Confidence 45553 899999999999999885 45 68999999972 1 11 246777 8
Q ss_pred CCCCChhHHHHHHHHhCCCCccEEEeCCCC
Q psy1489 117 CDFTQPDIQDRLVTILKDDKLDVVLSDMAP 146 (229)
Q Consensus 117 ~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~ 146 (229)
+|..+. + . .++.+||+|..|+++
T Consensus 139 ~d~~~~-----L-~-~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 139 GDALEY-----L-R-QPDNSFDVVYFDPMF 161 (234)
T ss_dssp S-CCCH-----C-C-CHSS--SEEEE--S-
T ss_pred CCHHHH-----H-h-hcCCCCCEEEECCCC
Confidence 887762 1 1 336789999999875
No 313
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=92.13 E-value=1 Score=39.00 Aligned_cols=97 Identities=20% Similarity=0.251 Sum_probs=54.5
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+++|.+||=.|+|+ |..+..+++..+ ..+|++++.++-. .-.++..+ -|..+.+....+.+...
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G---------~~~v~~~~~~~~~~~~~~~~ga~~~--i~~~~~~~~~~l~~~~~ 238 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAG---------ASKIIVSEPSEARRELAEELGATIV--LDPTEVDVVAEVRKLTG 238 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHhCCCEE--ECCCccCHHHHHHHHhC
Confidence 46789999888643 334444454432 2278888876410 00122221 13333334444555555
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+..+|+|+..... ...+..+.+.|+++|+++.-
T Consensus 239 ~~~~d~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 239 GGGVDVSFDCAGV-----------------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCCCCEEEECCCC-----------------HHHHHHHHHhccCCCEEEEE
Confidence 5669999973311 12345677889999998864
No 314
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=92.03 E-value=1.3 Score=38.81 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=55.2
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCC--ChhHHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFT--QPDIQDRLVTI 131 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~--~~~~~~~i~~~ 131 (229)
+++|++||-.|||+ |..+..+|+..+ ..+|+++|.++.. .--++... -|.. +......+.+.
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G---------~~~Vi~~~~~~~~~~~a~~~Ga~~~--i~~~~~~~~~~~~v~~~ 251 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAK---------ASRIIAIDINPAKFELAKKLGATDC--VNPNDYDKPIQEVIVEI 251 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHhCCCeE--EcccccchhHHHHHHHH
Confidence 56799999999876 556666666653 2379999987610 00122211 1222 12223334443
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEee
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIKI 184 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~~ 184 (229)
.. +.+|+|+--. |. ...+..+.+.+++| |++++.-
T Consensus 252 ~~-~g~d~vid~~-----G~------------~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 252 TD-GGVDYSFECI-----GN------------VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred hC-CCCCEEEECC-----CC------------HHHHHHHHHHhhcCCCeEEEEe
Confidence 33 3799998632 11 12455677788886 9987643
No 315
>PRK06179 short chain dehydrogenase; Provisional
Probab=92.00 E-value=6.1 Score=32.61 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=50.9
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCCCCCCeEEecCCCCChhHHHHHHHHh--CCCCc
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYPIDGAVVLSKCDFTQPDIQDRLVTIL--KDDKL 137 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~~~~~~~~~~~D~~~~~~~~~i~~~~--~~~~~ 137 (229)
+..||-.| |+|+++..+++++.. ...+|++++.++ .....+++++ ++|+++.+....+.+.. .-+.+
T Consensus 4 ~~~vlVtG-asg~iG~~~a~~l~~-------~g~~V~~~~r~~~~~~~~~~~~~~-~~D~~d~~~~~~~~~~~~~~~g~~ 74 (270)
T PRK06179 4 SKVALVTG-ASSGIGRATAEKLAR-------AGYRVFGTSRNPARAAPIPGVELL-ELDVTDDASVQAAVDEVIARAGRI 74 (270)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHH-------CCCEEEEEeCChhhccccCCCeeE-EeecCCHHHHHHHHHHHHHhCCCC
Confidence 45788888 467888888877642 235788888775 2334577888 99999976544333221 12468
Q ss_pred cEEEeCCCC
Q psy1489 138 DVVLSDMAP 146 (229)
Q Consensus 138 D~V~sd~~~ 146 (229)
|+++.+...
T Consensus 75 d~li~~ag~ 83 (270)
T PRK06179 75 DVLVNNAGV 83 (270)
T ss_pred CEEEECCCC
Confidence 999998764
No 316
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.00 E-value=0.96 Score=35.29 Aligned_cols=113 Identities=15% Similarity=0.064 Sum_probs=58.3
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEE
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVL 141 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~ 141 (229)
|++++-+|.. =-|...+|-.. ++.+|+.||.+++.--+..+-. ...+...+....... . .++||.+.
T Consensus 2 ~~~g~V~GS~-~PwvEv~aL~~---------GA~~iltveyn~L~i~~~~~dr-~ssi~p~df~~~~~~-y-~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSM-QPWVEVMALQH---------GAAKILTVEYNKLEIQEEFRDR-LSSILPVDFAKNWQK-Y-AGSFDFAA 68 (177)
T ss_pred CceEEEEecC-CchhhHHHHHc---------CCceEEEEeecccccCcccccc-cccccHHHHHHHHHH-h-hccchhhh
Confidence 5677888877 34666666555 4578999998763211111000 111111122211211 1 45799988
Q ss_pred eCCCCCCCCC-CcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC
Q psy1489 142 SDMAPNATGM-REMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR 188 (229)
Q Consensus 142 sd~~~~~~g~-~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~ 188 (229)
|-.+..-.|. +..|+...... ...+..+.++|||||.|.+.+.-+.
T Consensus 69 s~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred eechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEeecCC
Confidence 7444322221 11111111111 2456778899999999998775443
No 317
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=91.96 E-value=0.27 Score=41.67 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=43.7
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhCCCCc
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL 137 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~ 137 (229)
+|+||.||.|+++..+... | -..|.++|+++. ...+.. .+ .+|+.+....+ + ...+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G---------~~~v~a~e~~~~a~~~~~~N~~~~-~~-~~Di~~~~~~~-----~-~~~~ 63 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G---------FEIVAANEIDKSAAETYEANFPNK-LI-EGDITKIDEKD-----F-IPDI 63 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C---------CEEEEEEeCCHHHHHHHHHhCCCC-Cc-cCccccCchhh-----c-CCCC
Confidence 6999999999998886653 2 247889999872 122332 44 67887743211 1 3469
Q ss_pred cEEEeCCCC
Q psy1489 138 DVVLSDMAP 146 (229)
Q Consensus 138 D~V~sd~~~ 146 (229)
|+++.+.++
T Consensus 64 D~l~~gpPC 72 (275)
T cd00315 64 DLLTGGFPC 72 (275)
T ss_pred CEEEeCCCC
Confidence 999998764
No 318
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.78 E-value=0.58 Score=40.44 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=25.6
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
+++|++||-.|+|+ |..+..+++..+ .+|++++.++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G----------~~vi~~~~~~ 199 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQG----------ATVHVMTRGA 199 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCC----------CeEEEEeCCh
Confidence 56899999999865 444455555543 4788998876
No 319
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.77 E-value=0.42 Score=41.64 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=52.9
Q ss_pred CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCC---C--CC--CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489 60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL---P--IY--PIDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~---~--~~--~~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
++|.+||-+|+|+ |.++..+++..+ .+|++++.+ + .. .--++..+ +..+.+..+ ..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G----------~~vi~~~~~~~~~~~~~~~~~~Ga~~v---~~~~~~~~~-~~-- 234 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRG----------FEVYVLNRRDPPDPKADIVEELGATYV---NSSKTPVAE-VK-- 234 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC----------CeEEEEecCCCCHHHHHHHHHcCCEEe---cCCccchhh-hh--
Confidence 5789999999876 666666666653 489999873 2 00 01133333 222211111 11
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
....+|+|+--. |. ...+..+.+.|++||++++.-
T Consensus 235 -~~~~~d~vid~~-----g~------------~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 235 -LVGEFDLIIEAT-----GV------------PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred -hcCCCCEEEECc-----CC------------HHHHHHHHHHccCCcEEEEEe
Confidence 134699999732 21 124566888899999987643
No 320
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.61 E-value=0.86 Score=39.00 Aligned_cols=94 Identities=17% Similarity=0.120 Sum_probs=52.7
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCCh-hHHHHHHHH
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQP-DIQDRLVTI 131 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~-~~~~~i~~~ 131 (229)
+++|++||=.|+ |+ |..+..+++..| .+|++++.++- ..+ -++..+ -|..+. .....+..
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G----------~~Vi~~~~s~~~~~~~~~lGa~~v--i~~~~~~~~~~~~~~- 202 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKG----------CKVVGAAGSDEKVAYLKKLGFDVA--FNYKTVKSLEETLKK- 202 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHcCCCEE--EeccccccHHHHHHH-
Confidence 568999999885 33 666666676653 57888887651 101 122211 111221 12222222
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
..++.+|+|+... |. ..+..+.+.|+++|++++.
T Consensus 203 ~~~~gvdvv~d~~-----G~-------------~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 203 ASPDGYDCYFDNV-----GG-------------EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred hCCCCeEEEEECC-----CH-------------HHHHHHHHHhCcCcEEEEe
Confidence 3345799999622 10 1235578889999999863
No 321
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=91.59 E-value=1.9 Score=37.78 Aligned_cols=96 Identities=22% Similarity=0.246 Sum_probs=54.3
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCe-EEecCCCCCh--hHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAV-VLSKCDFTQP--DIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~-~~~~~D~~~~--~~~~~i~~ 130 (229)
+++|++||=+|+|+ |..+..+++..+ ..+|+++|.++. .. --++. ++ |..+. +....+.+
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G---------~~~vi~~~~~~~~~~~~~~lGa~~~i---~~~~~~~~~~~~v~~ 251 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAG---------ASRIIGIDINPDKFELAKKFGATDCV---NPKDHDKPIQQVLVE 251 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHcCCCEEE---cccccchHHHHHHHH
Confidence 56799999998765 445555565543 237999998761 10 01222 22 22221 23333444
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEee
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIKI 184 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~~ 184 (229)
... +.+|+|+--. |. ...+..+.+.|+++ |++++.-
T Consensus 252 ~~~-~g~d~vid~~-----g~------------~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 252 MTD-GGVDYTFECI-----GN------------VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred HhC-CCCcEEEECC-----CC------------hHHHHHHHHhhccCCCeEEEEc
Confidence 333 4799999722 21 12455677889887 9988643
No 322
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.54 E-value=6.3 Score=32.53 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=50.5
Q ss_pred CCCeeEeecCC-CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CC-------CC-CCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAA-PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IY-------PI-DGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcG-pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~-------~~-~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.++.+|-.|+| +++++..+++.+.. ...+|+.++.+. .. .+ ..+.++ +.|+.+.+....+.+
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~-------~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~i~~~~~ 77 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQE-------QGAEVVLTGFGRALRLTERIAKRLPEPAPVL-ELDVTNEEHLASLAD 77 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHH-------CCCEEEEecCccchhHHHHHHHhcCCCCcEE-eCCCCCHHHHHHHHH
Confidence 36789999996 68888888877642 234787777543 11 11 135677 899999865544433
Q ss_pred HhC--CCCccEEEeCCCC
Q psy1489 131 ILK--DDKLDVVLSDMAP 146 (229)
Q Consensus 131 ~~~--~~~~D~V~sd~~~ 146 (229)
... -+.+|+++.++..
T Consensus 78 ~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 78 RVREHVDGLDGVVHSIGF 95 (256)
T ss_pred HHHHHcCCCcEEEEcccc
Confidence 221 2579999998754
No 323
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.42 E-value=0.28 Score=35.64 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcccCCCEEEEee
Q psy1489 163 AIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 163 ~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
+...++.+.+.|+|||.||++-
T Consensus 23 l~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 23 LKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE-
T ss_pred HHHHHHHHHHhhCCCCEEEEeC
Confidence 3467888999999999999975
No 324
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.99 E-value=1.8 Score=37.79 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=52.9
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCe-EEecCCCCC--hhHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAV-VLSKCDFTQ--PDIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~-~~~~~D~~~--~~~~~~i~~ 130 (229)
+++|++||-+|+|+ |..+..+++..+ ..+|+++|.++. . .--++. ++ |..+ ......+.+
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G---------~~~Vi~~~~~~~~~~~~~~~ga~~~i---~~~~~~~~~~~~~~~ 249 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAG---------ASRIIGVDINEDKFEKAKEFGATDFI---NPKDSDKPVSEVIRE 249 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHcCCCcEe---ccccccchHHHHHHH
Confidence 56899999998765 445555566543 237999988751 0 001221 22 1111 112233444
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEe
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIK 183 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~ 183 (229)
... ..+|+|+.-. |. ...+..+.+.|+++ |++++.
T Consensus 250 ~~~-~g~d~vid~~-----g~------------~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 250 MTG-GGVDYSFECT-----GN------------ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred HhC-CCCCEEEECC-----CC------------hHHHHHHHHhcccCCCEEEEE
Confidence 343 5799999622 11 12455677889886 988764
No 325
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.96 E-value=2.3 Score=38.46 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=65.7
Q ss_pred CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC----CCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI----DGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~----~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
-.|++|+-+|+|+ |......++..+ .+|+.+|.++.... .+..+ .+ +.+.+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G----------a~ViV~d~dp~ra~~A~~~G~~v------~~------l~eal-- 265 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG----------ARVIVTEVDPICALQAAMDGFRV------MT------MEEAA-- 265 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC----------CEEEEEcCCchhhHHHHhcCCEe------cC------HHHHH--
Confidence 4689999999987 333333333332 58999998873211 12221 11 11222
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHH-HHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCC
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIR-FAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSR 213 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~-~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr 213 (229)
..+|+|+... |.. .++. .....+|+|+.++..- ......++-. |...-....-++|..-+
T Consensus 266 ~~aDVVI~aT-----G~~------------~vI~~~~~~~mK~GailiNvG-~~d~Eid~~~-L~~~~~~~~~v~~~v~~ 326 (425)
T PRK05476 266 ELGDIFVTAT-----GNK------------DVITAEHMEAMKDGAILANIG-HFDNEIDVAA-LEELAVKWREIKPQVDE 326 (425)
T ss_pred hCCCEEEECC-----CCH------------HHHHHHHHhcCCCCCEEEEcC-CCCCccChHH-HhhcCcceeecCCCceE
Confidence 2589998732 211 1232 4677899999877532 2221111111 22221233444564322
Q ss_pred ---CCCceEEEEeccCC
Q psy1489 214 ---SHSAELFLLGRGFK 227 (229)
Q Consensus 214 ---~~s~E~Y~v~~~~~ 227 (229)
++...+|+++.|+.
T Consensus 327 y~~~~g~~i~lLa~Grl 343 (425)
T PRK05476 327 YTLPDGKRIILLAEGRL 343 (425)
T ss_pred EEeCCCCEEEEEeCCcc
Confidence 34567999998875
No 326
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.80 E-value=8.1 Score=31.74 Aligned_cols=77 Identities=17% Similarity=0.292 Sum_probs=49.7
Q ss_pred CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489 61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----YPI--DGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----~~~--~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
.++.+|-.|.+. ++++..+++.+.. ...+|+.++.+. . ..+ ..+.++ +.|+++.+....+.+.+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~-------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~v~~~~~~~ 77 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKD-------QGATVIYTYQNDRMKKSLQKLVDEEDLLV-ECDVASDESIERAFATI 77 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHH-------CCCEEEEecCchHHHHHHHhhccCceeEE-eCCCCCHHHHHHHHHHH
Confidence 467899999886 6888888877642 234787776542 0 111 246677 89999876544333322
Q ss_pred C--CCCccEEEeCCC
Q psy1489 133 K--DDKLDVVLSDMA 145 (229)
Q Consensus 133 ~--~~~~D~V~sd~~ 145 (229)
. -+.+|+++.++.
T Consensus 78 ~~~~g~iD~lv~nAg 92 (252)
T PRK06079 78 KERVGKIDGIVHAIA 92 (252)
T ss_pred HHHhCCCCEEEEccc
Confidence 1 157999999875
No 327
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=90.75 E-value=1.9 Score=37.01 Aligned_cols=94 Identities=24% Similarity=0.238 Sum_probs=54.3
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCC-eEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGA-VVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~-~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+.+|.+||..|+|. |..+..+++..+ .+|+++..++- ..+ .++ +++ +..+......+....
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g----------~~v~~~~~s~~~~~~~~~~g~~~v~---~~~~~~~~~~l~~~~ 223 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARG----------ARVIVVDIDDERLEFARELGADDTI---NVGDEDVAARLRELT 223 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----------CeEEEECCCHHHHHHHHHhCCCEEe---cCcccCHHHHHHHHh
Confidence 56789999997653 445555566543 57888865541 000 111 222 222333334455555
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
++..+|+++..... ...+..+.+.|+++|+++.
T Consensus 224 ~~~~vd~vld~~g~-----------------~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 224 DGEGADVVIDATGN-----------------PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCCCEEEECCCC-----------------HHHHHHHHHHHhcCCEEEE
Confidence 56679999983210 1234567888999999875
No 328
>PLN02494 adenosylhomocysteinase
Probab=90.69 E-value=5.1 Score=36.70 Aligned_cols=127 Identities=19% Similarity=0.216 Sum_probs=68.2
Q ss_pred CccCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC----CCCeEEecCCCCChhHHHHHHHH
Q psy1489 57 KFLRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI----DGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 57 ~~~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~----~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
++.-.|++|+-+|+|+ |......++..| .+|+.+|.++.... .+..+. . +.+.
T Consensus 249 ~i~LaGKtVvViGyG~IGr~vA~~aka~G----------a~VIV~e~dp~r~~eA~~~G~~vv------~------leEa 306 (477)
T PLN02494 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAG----------ARVIVTEIDPICALQALMEGYQVL------T------LEDV 306 (477)
T ss_pred CCccCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEeCCchhhHHHHhcCCeec------c------HHHH
Confidence 3334689999999998 433333333332 58999998873211 122211 1 1122
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--CChHHHHHH--HHh--hCCeeE
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--RNRPQLEES--ITR--FYSQVK 205 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~~~~~~~~~--l~~--~F~~v~ 205 (229)
+ ...|+|+.. +|... .+.......+|+||.++..-... -+...+.+. +.. ....+.
T Consensus 307 l--~~ADVVI~t-----TGt~~-----------vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~~~vd 368 (477)
T PLN02494 307 V--SEADIFVTT-----TGNKD-----------IIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTD 368 (477)
T ss_pred H--hhCCEEEEC-----CCCcc-----------chHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccCCCce
Confidence 2 247999972 22211 11245777899999988643211 234444433 211 123344
Q ss_pred EEcCCCCCCC-CceEEEEeccCC
Q psy1489 206 ILKPPSSRSH-SAELFLLGRGFK 227 (229)
Q Consensus 206 ~~kp~~sr~~-s~E~Y~v~~~~~ 227 (229)
.+.- ++ ...+|+++.|..
T Consensus 369 ~y~~----~d~g~~i~ll~eGrl 387 (477)
T PLN02494 369 RWVF----PDTGSGIIVLAEGRL 387 (477)
T ss_pred EEEc----CCCCCEEEEEeCCcc
Confidence 4432 33 577999999875
No 329
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.67 E-value=0.69 Score=39.56 Aligned_cols=86 Identities=16% Similarity=0.099 Sum_probs=49.7
Q ss_pred CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCC-CCChhHHHHHHHHhCCCCcc
Q psy1489 61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD-FTQPDIQDRLVTILKDDKLD 138 (229)
Q Consensus 61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D-~~~~~~~~~i~~~~~~~~~D 138 (229)
++++||-+|||+ |.++..+++..+ ...|+++|..+. .+..+ ..+ +.+.. . .....+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G---------~~~v~~~~~~~~-rl~~a----~~~~~i~~~------~-~~~~g~D 202 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG---------GSPPAVWETNPR-RRDGA----TGYEVLDPE------K-DPRRDYR 202 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC---------CceEEEeCCCHH-HHHhh----hhccccChh------h-ccCCCCC
Confidence 578899999887 666676777653 235777777651 11111 010 01110 0 0234689
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 139 VVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 139 ~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
+|+-.. |. ...+..+.+.|+++|++++.-
T Consensus 203 vvid~~-----G~------------~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 203 AIYDAS-----GD------------PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EEEECC-----CC------------HHHHHHHHHhhhcCcEEEEEe
Confidence 998632 21 124556788899999998644
No 330
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.50 E-value=1 Score=32.38 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=57.1
Q ss_pred CCCCchHHHHHHHHhccCCCCCCCCc-EEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCC
Q psy1489 70 AAPGSWSQVAVKLVNSHGYDSKQPKG-LVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDM 144 (229)
Q Consensus 70 cGpG~~s~~la~~~~~~~~~~~~~~~-~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~ 144 (229)
||.|.++..+++.+. ..+ .|+.+|.++- . .-.++.++ .+|.+++.+.... .-..+|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~--------~~~~~vvvid~d~~~~~~~~~~~~~~i-~gd~~~~~~l~~a----~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLK--------EGGIDVVVIDRDPERVEELREEGVEVI-YGDATDPEVLERA----GIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHH--------HTTSEEEEEESSHHHHHHHHHTTSEEE-ES-TTSHHHHHHT----TGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHH--------hCCCEEEEEECCcHHHHHHHhcccccc-cccchhhhHHhhc----CccccCEEEEcc
Confidence 566788888888775 335 7999999861 1 12468888 9999998765432 234788888844
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 145 APNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 145 ~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
. +.... ..+....+-+.|...++.....
T Consensus 71 ~---------~d~~n-----~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 71 D---------DDEEN-----LLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp S---------SHHHH-----HHHHHHHHHHTTTSEEEEEESS
T ss_pred C---------CHHHH-----HHHHHHHHHHCCCCeEEEEECC
Confidence 2 12222 1233345667788888887654
No 331
>KOG3201|consensus
Probab=90.48 E-value=0.61 Score=36.47 Aligned_cols=119 Identities=12% Similarity=0.137 Sum_probs=61.1
Q ss_pred CCCeeEeecCCCCchH-HHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEE---------ecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWS-QVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVL---------SKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s-~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~---------~~~D~~~~~~~~~i~~ 130 (229)
.|.+||+||.|-=+++ ..+|... +...|.-.|-++. .+++++-+ ...-...-.... -..
T Consensus 29 rg~~ilelgggft~laglmia~~a---------~~~~v~ltdgne~-svrnv~ki~~~n~~s~~tsc~vlrw~~~~-aqs 97 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKA---------PDSSVWLTDGNEE-SVRNVEKIRNSNMASSLTSCCVLRWLIWG-AQS 97 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeec---------CCceEEEecCCHH-HHHHHHHHHhcccccccceehhhHHHHhh-hHH
Confidence 3689999998864443 4444443 5567777777651 11111000 000000000000 011
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC-CCChHHHHHHHHhhC
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD-GRNRPQLEESITRFY 201 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~-~~~~~~~~~~l~~~F 201 (229)
......||+|++.-+. ..+ +.-....+.+.++|+|.|.-++-... +...+.|..+.....
T Consensus 98 q~eq~tFDiIlaADCl------Ffd-----E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~g 158 (201)
T KOG3201|consen 98 QQEQHTFDIILAADCL------FFD-----EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVG 158 (201)
T ss_pred HHhhCcccEEEeccch------hHH-----HHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhce
Confidence 1234589999984432 111 22345667799999999986543222 345666666665543
No 332
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=90.33 E-value=2 Score=36.54 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=53.8
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+++|++||=.|+ |+ |..+..+++..| .+|++++.++- ..+ -++..+ -|..+.+....+....
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G----------~~vi~~~~s~~~~~~l~~~Ga~~v--i~~~~~~~~~~v~~~~ 208 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKG----------CKVIGCAGSDDKVAWLKELGFDAV--FNYKTVSLEEALKEAA 208 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHcCCCEE--EeCCCccHHHHHHHHC
Confidence 568899998884 33 556666676654 57888887651 000 122221 1222333333444433
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+..+|+|+.-. | ...+..+.+.|+++|+++.
T Consensus 209 -~~gvd~vld~~-----g-------------~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 209 -PDGIDCYFDNV-----G-------------GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred -CCCcEEEEECC-----C-------------HHHHHHHHHhhccCCEEEE
Confidence 35799999622 1 0234567888999999875
No 333
>KOG0022|consensus
Probab=90.29 E-value=1 Score=38.93 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=45.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCC-CeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDG-AVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~-~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+++|.+|.-+|+|.=+++...-.+.. .+.+++|||+++- . .--+ .+++...|..+ .+++.|.+..
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~--------GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~-~i~evi~EmT- 259 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAA--------GASRIIGVDINPDKFEKAKEFGATEFINPKDLKK-PIQEVIIEMT- 259 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhc--------CcccEEEEecCHHHHHHHHhcCcceecChhhccc-cHHHHHHHHh-
Confidence 46788898899888666655544444 5679999999971 1 1112 22331224444 3555666644
Q ss_pred CCCccEEEe
Q psy1489 134 DDKLDVVLS 142 (229)
Q Consensus 134 ~~~~D~V~s 142 (229)
++.+|.-+-
T Consensus 260 dgGvDysfE 268 (375)
T KOG0022|consen 260 DGGVDYSFE 268 (375)
T ss_pred cCCceEEEE
Confidence 577888773
No 334
>PRK07806 short chain dehydrogenase; Provisional
Probab=90.24 E-value=4.1 Score=33.09 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=59.2
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-------C----CCCeEEecCCCCChhHHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-------I----DGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-------~----~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
+.++|-.|+ +|+++..+++.+.. ...+|++++.+.... + ..+.++ .+|+++++....+.+
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~-------~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAG-------AGAHVVVNYRQKAPRANKVVAEIEAAGGRASAV-GADLTDEESVAALMD 76 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHH-------CCCEEEEEeCCchHhHHHHHHHHHhcCCceEEE-EcCCCCHHHHHHHHH
Confidence 578888885 56777777776642 224788877653110 0 235677 899999765443332
Q ss_pred HhC--CCCccEEEeCCCCCCCCCCcccHH--HHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 131 ILK--DDKLDVVLSDMAPNATGMREMDHD--LITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 131 ~~~--~~~~D~V~sd~~~~~~g~~~~d~~--~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
.+. -+.+|+|+.++..........+.. ....-...+++.+...++.+|+++.
T Consensus 77 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~ 132 (248)
T PRK07806 77 TAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF 132 (248)
T ss_pred HHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence 211 136899887764321111011100 0011122344556666666777664
No 335
>KOG0023|consensus
Probab=90.18 E-value=1.9 Score=37.34 Aligned_cols=94 Identities=22% Similarity=0.159 Sum_probs=59.9
Q ss_pred CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---CC--CCCeEEecCCCC-ChhHHHHHHHHh
Q psy1489 60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---PI--DGAVVLSKCDFT-QPDIQDRLVTIL 132 (229)
Q Consensus 60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---~~--~~~~~~~~~D~~-~~~~~~~i~~~~ 132 (229)
.||++|--+|.|- |.++..+|+.+| .+|+++|-+.-. .+ -+++.+ -|.+ +++....+...+
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG----------~rV~vis~~~~kkeea~~~LGAd~f--v~~~~d~d~~~~~~~~~ 247 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMG----------MRVTVISTSSKKKEEAIKSLGADVF--VDSTEDPDIMKAIMKTT 247 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhC----------cEEEEEeCCchhHHHHHHhcCccee--EEecCCHHHHHHHHHhh
Confidence 4889988888655 888888888876 699999998511 11 234433 2334 666555555433
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
+.-.|.|.+- ....+..+..+||++|++|+.-.
T Consensus 248 -dg~~~~v~~~-------------------a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 248 -DGGIDTVSNL-------------------AEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred -cCcceeeeec-------------------cccchHHHHHHhhcCCEEEEEeC
Confidence 3345555531 12345558889999999987543
No 336
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=90.15 E-value=3.5 Score=35.81 Aligned_cols=98 Identities=22% Similarity=0.227 Sum_probs=61.2
Q ss_pred cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC--CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY--PIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~--~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+++|++||-.|++. |.++..+++..+ ..++++-.++ .. .--++... -|..+.+..+.+.+..
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G----------~~~v~~~~s~~k~~~~~~lGAd~v--i~y~~~~~~~~v~~~t 207 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALG----------ATVVAVVSSSEKLELLKELGADHV--INYREEDFVEQVRELT 207 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC----------CcEEEEecCHHHHHHHHhcCCCEE--EcCCcccHHHHHHHHc
Confidence 57799999998544 567777787763 2555555543 11 11122222 2344444556677767
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
.+..+|+|+.... ...+..+.+.|+++|+++..-..
T Consensus 208 ~g~gvDvv~D~vG------------------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 208 GGKGVDVVLDTVG------------------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCCCceEEEECCC------------------HHHHHHHHHHhccCCEEEEEecC
Confidence 6778999998432 13455578889999999875443
No 337
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=90.11 E-value=8.9 Score=33.19 Aligned_cols=73 Identities=16% Similarity=0.029 Sum_probs=47.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC------C---CCCeEEecCCCCChhHHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP------I---DGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~------~---~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
.|++||-.| |+|..+.++++.+-. ...+|+++|.++... . ..+.++ .+|+++..... ..
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~---~~ 70 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLE-------LGAEVYGYSLDPPTSPNLFELLNLAKKIEDH-FGDIRDAAKLR---KA 70 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHH-------CCCEEEEEeCCCccchhHHHHHhhcCCceEE-EccCCCHHHHH---HH
Confidence 467888877 677888888876641 224899998765211 1 135567 89999865433 33
Q ss_pred hCCCCccEEEeCCC
Q psy1489 132 LKDDKLDVVLSDMA 145 (229)
Q Consensus 132 ~~~~~~D~V~sd~~ 145 (229)
+.+..+|.|+..+.
T Consensus 71 ~~~~~~d~vih~A~ 84 (349)
T TIGR02622 71 IAEFKPEIVFHLAA 84 (349)
T ss_pred HhhcCCCEEEECCc
Confidence 33446899997665
No 338
>PHA01634 hypothetical protein
Probab=90.10 E-value=0.44 Score=35.67 Aligned_cols=34 Identities=18% Similarity=0.037 Sum_probs=30.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
.+.+|+|+|++-|.-+++++.+ ++..|++++.++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~----------GAK~Vva~E~~~ 61 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR----------GASFVVQYEKEE 61 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc----------CccEEEEeccCH
Confidence 5899999999999999999876 457999999987
No 339
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.07 E-value=8 Score=34.78 Aligned_cols=126 Identities=22% Similarity=0.200 Sum_probs=68.7
Q ss_pred CccCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC----CCCCeEEecCCCCChhHHHHHHHH
Q psy1489 57 KFLRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP----IDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 57 ~~~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~----~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
++...|++|+-+|+|+ |......++..+ .+|+++|.++... ..+..+. +. .+.
T Consensus 190 ~~~l~Gk~VvViG~G~IG~~vA~~ak~~G----------a~ViV~d~dp~r~~~A~~~G~~v~---~l---------eea 247 (406)
T TIGR00936 190 NLLIAGKTVVVAGYGWCGKGIAMRARGMG----------ARVIVTEVDPIRALEAAMDGFRVM---TM---------EEA 247 (406)
T ss_pred CCCCCcCEEEEECCCHHHHHHHHHHhhCc----------CEEEEEeCChhhHHHHHhcCCEeC---CH---------HHH
Confidence 3345789999999999 444344444433 5899999887321 1222221 11 112
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHH-HHHHcccCCCEEEEee-cCC-CChHHHHHHHHh---hCCeeE
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIR-FAVTYSKPGADCLIKI-WDG-RNRPQLEESITR---FYSQVK 205 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~-~~~~~LkpgG~~v~~~-~~~-~~~~~~~~~l~~---~F~~v~ 205 (229)
+ ...|+|++.. |. ..++. .....+|+|+.++..- +.. -+...+.+.+.. .-..+.
T Consensus 248 l--~~aDVVItaT-----G~------------~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~ 308 (406)
T TIGR00936 248 A--KIGDIFITAT-----GN------------KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVD 308 (406)
T ss_pred H--hcCCEEEECC-----CC------------HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceE
Confidence 2 2479988722 21 12222 3667889999887532 221 244555554422 123333
Q ss_pred EEcCCCCCCCCceEEEEeccCC
Q psy1489 206 ILKPPSSRSHSAELFLLGRGFK 227 (229)
Q Consensus 206 ~~kp~~sr~~s~E~Y~v~~~~~ 227 (229)
.+. -++...+|+++.|..
T Consensus 309 ~~~----~~~g~~i~ll~~Grl 326 (406)
T TIGR00936 309 EYI----LKDGRRIYLLAEGRL 326 (406)
T ss_pred EEE----eCCCCEEEEEeCCce
Confidence 333 244568999998864
No 340
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=89.97 E-value=0.26 Score=35.63 Aligned_cols=33 Identities=12% Similarity=-0.036 Sum_probs=24.6
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
+-...+|||||.|-+.-.|... | ..-.|+|...
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-G----------y~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-G----------YPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-C----------CCcccccccc
Confidence 4567999999999887776654 2 3557899765
No 341
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=89.85 E-value=3.6 Score=34.18 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=44.1
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-C----------CCCCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-I----------YPIDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~----------~~~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
.|.+||=|| -.-++..++...+ +..+|+.+|+.+ + ..++ ++.. ..|+.++ ++
T Consensus 44 ~gk~il~lG--DDDLtSlA~al~~--------~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~-~~DlR~~-----LP 106 (243)
T PF01861_consen 44 EGKRILFLG--DDDLTSLALALTG--------LPKRITVVDIDERLLDFINRVAEEEGLP-IEAV-HYDLRDP-----LP 106 (243)
T ss_dssp TT-EEEEES---TT-HHHHHHHHT----------SEEEEE-S-HHHHHHHHHHHHHHT---EEEE----TTS--------
T ss_pred cCCEEEEEc--CCcHHHHHHHhhC--------CCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEE-Eeccccc-----CC
Confidence 478899766 4444433333344 456999999986 1 1233 6777 8888874 33
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG 187 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~ 187 (229)
+.+ .++||+++.|++-.. +-..-.+..+...||.-|..+.-.+..
T Consensus 107 ~~~-~~~fD~f~TDPPyT~------------~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 107 EEL-RGKFDVFFTDPPYTP------------EGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp TTT-SS-BSEEEE---SSH------------HHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred HHH-hcCCCEEEeCCCCCH------------HHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 323 368999999986311 112334566777887766443323433
No 342
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.83 E-value=0.66 Score=39.05 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=39.1
Q ss_pred hHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 49 LLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 49 l~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
|+......+++.+...++|+|||.|.++.++++.+... ..+...++.||...
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~----~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQED----KPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhc----ccCCccEEEEecCc
Confidence 55555677888888899999999999999999877411 11235788899864
No 343
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=89.64 E-value=3 Score=36.47 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=53.6
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCe-EEecCCCCC--hhHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAV-VLSKCDFTQ--PDIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~-~~~~~D~~~--~~~~~~i~~ 130 (229)
+++|++||-.|+|+ |..+..+++..+ ..+|+++|.++- .. --++. ++ |..+ ......+.+
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G---------~~~vi~~~~~~~~~~~~~~~Ga~~~i---~~~~~~~~~~~~v~~ 252 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRG---------ASRIIGVDLNPSKFEQAKKFGVTEFV---NPKDHDKPVQEVIAE 252 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHcCCceEE---cccccchhHHHHHHH
Confidence 46899999998765 445555565543 237999988751 00 01222 22 2111 223333444
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCC-CEEEEeec
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPG-ADCLIKIW 185 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg-G~~v~~~~ 185 (229)
... +.+|+|+--. |. ...+..+.+.+++| |++++.-.
T Consensus 253 ~~~-~~~d~vid~~-----G~------------~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 253 MTG-GGVDYSFECT-----GN------------IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred HhC-CCCCEEEECC-----CC------------hHHHHHHHHHhhcCCCEEEEECc
Confidence 333 3799988622 11 12445577788996 99876433
No 344
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=89.52 E-value=4.1 Score=35.35 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=52.2
Q ss_pred CccCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--CC--CCCe-EEecCCCC-ChhHHHHHH
Q psy1489 57 KFLRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--PI--DGAV-VLSKCDFT-QPDIQDRLV 129 (229)
Q Consensus 57 ~~~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~~--~~~~-~~~~~D~~-~~~~~~~i~ 129 (229)
....+|.+||=.|+|. |..+..+++..+ ..+|++++.++.. .+ -++. ++ ..+-. .......+.
T Consensus 173 ~~~~~g~~vlI~g~g~vG~~~~~lak~~G---------~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~i~ 242 (361)
T cd08231 173 GPVGAGDTVVVQGAGPLGLYAVAAAKLAG---------ARRVIVIDGSPERLELAREFGADATI-DIDELPDPQRRAIVR 242 (361)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHcCCCeEE-cCcccccHHHHHHHH
Confidence 3345788999988644 334444555543 2278888876510 00 1221 22 11111 111112344
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+...+..+|+|+... |. ...+..+.+.|+++|+++.
T Consensus 243 ~~~~~~~~d~vid~~-----g~------------~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 243 DITGGRGADVVIEAS-----GH------------PAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred HHhCCCCCcEEEECC-----CC------------hHHHHHHHHHhccCCEEEE
Confidence 444556799999632 10 1234567788999999975
No 345
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=89.21 E-value=2.2 Score=36.74 Aligned_cols=92 Identities=15% Similarity=0.280 Sum_probs=52.6
Q ss_pred cCCC--CeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCc-EEEEEeCCCC--C---CCCCCe-EEecCCCCChhHHHH
Q psy1489 59 LRPG--LKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKG-LVLSVDKLPI--Y---PIDGAV-VLSKCDFTQPDIQDR 127 (229)
Q Consensus 59 ~~~g--~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~-~v~gvD~~~~--~---~~~~~~-~~~~~D~~~~~~~~~ 127 (229)
+++| ++||=.|+ |+ |..+..+++..| . +|++++.++- . .--++. ++ |..+.+..+.
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G----------~~~Vi~~~~s~~~~~~~~~~lGa~~vi---~~~~~~~~~~ 216 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLG----------CSRVVGICGSDEKCQLLKSELGFDAAI---NYKTDNVAER 216 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcC----------CCEEEEEcCCHHHHHHHHHhcCCcEEE---ECCCCCHHHH
Confidence 3455 89999987 33 556666666653 4 7999887651 1 101222 22 2222233344
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+.+.. +..+|+|+... |. ..+..+.+.|+++|+++.
T Consensus 217 i~~~~-~~gvd~vid~~-----g~-------------~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 217 LRELC-PEGVDVYFDNV-----GG-------------EISDTVISQMNENSHIIL 252 (345)
T ss_pred HHHHC-CCCceEEEECC-----Cc-------------HHHHHHHHHhccCCEEEE
Confidence 44433 35799999622 10 123457788999999886
No 346
>PRK06196 oxidoreductase; Provisional
Probab=89.18 E-value=5.7 Score=33.90 Aligned_cols=77 Identities=13% Similarity=0.215 Sum_probs=50.8
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhC-
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILK- 133 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~- 133 (229)
.+.+||-.|+ +|+++..+++.+.. ...+|+.++.++- ..+.++.++ .+|+.+......+...+.
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~-------~G~~Vv~~~R~~~~~~~~~~~l~~v~~~-~~Dl~d~~~v~~~~~~~~~ 95 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQ-------AGAHVIVPARRPDVAREALAGIDGVEVV-MLDLADLESVRAFAERFLD 95 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHhhhCeEE-EccCCCHHHHHHHHHHHHh
Confidence 4678888885 57788888876642 2348888887641 123347788 999999765544333221
Q ss_pred -CCCccEEEeCCCC
Q psy1489 134 -DDKLDVVLSDMAP 146 (229)
Q Consensus 134 -~~~~D~V~sd~~~ 146 (229)
.+..|+++.++..
T Consensus 96 ~~~~iD~li~nAg~ 109 (315)
T PRK06196 96 SGRRIDILINNAGV 109 (315)
T ss_pred cCCCCCEEEECCCC
Confidence 2578999998753
No 347
>KOG1562|consensus
Probab=89.13 E-value=2.2 Score=36.55 Aligned_cols=121 Identities=12% Similarity=-0.023 Sum_probs=71.4
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-------------C--CCCCeEEecCCCCChhHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-------------P--IDGAVVLSKCDFTQPDIQ 125 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-------------~--~~~~~~~~~~D~~~~~~~ 125 (229)
..++||-+|-|-|++....+++ . .-+.+.-+|+..+. . -+.+..+ -||-..
T Consensus 121 npkkvlVVgggDggvlrevikH-~--------~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~-iGDG~~---- 186 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-K--------SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLL-IGDGFL---- 186 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-c--------cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEE-eccHHH----
Confidence 4579999999999998777665 2 23466666666420 1 1345566 565332
Q ss_pred HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC----hHHHHHHHHhhC
Q psy1489 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN----RPQLEESITRFY 201 (229)
Q Consensus 126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~----~~~~~~~l~~~F 201 (229)
+.+..+.++||+|+.|-+- ...+.... .....+....+.||++|.+++..-+..- ..+.+...+..|
T Consensus 187 --fl~~~~~~~~dVii~dssd-----pvgpa~~l--f~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f 257 (337)
T KOG1562|consen 187 --FLEDLKENPFDVIITDSSD-----PVGPACAL--FQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIF 257 (337)
T ss_pred --HHHHhccCCceEEEEecCC-----ccchHHHH--HHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhc
Confidence 3444667899999987642 11111111 1235667788899999998875422221 233334444446
Q ss_pred Cee
Q psy1489 202 SQV 204 (229)
Q Consensus 202 ~~v 204 (229)
..+
T Consensus 258 ~~t 260 (337)
T KOG1562|consen 258 DLT 260 (337)
T ss_pred Ccc
Confidence 543
No 348
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=89.12 E-value=2.6 Score=36.87 Aligned_cols=94 Identities=26% Similarity=0.303 Sum_probs=54.3
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAV-VLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~-~~~~~D~~~~~~~~~i~~~~ 132 (229)
++++++||-.|+|. |..+..+++..| ..+++++|.++.. .--++. ++ +..+.+....+....
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G---------~~~v~~~~~~~~k~~~~~~~g~~~~i---~~~~~~~~~~v~~~~ 251 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAG---------CTTIIAVDIVDSRLELAKELGATHVI---NPKEEDLVAAIREIT 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHcCCcEEe---cCCCcCHHHHHHHHh
Confidence 45789999988755 555555666553 2369999887510 001222 22 222222333344444
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+..+|+|+... |. ...+..+.+.|+++|+++.
T Consensus 252 -~~~~d~vld~~-----g~------------~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 252 -GGGVDYALDTT-----GV------------PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred -CCCCcEEEECC-----CC------------cHHHHHHHHHhccCCEEEE
Confidence 56799999632 11 0234567888999999886
No 349
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.04 E-value=2.8 Score=36.14 Aligned_cols=94 Identities=26% Similarity=0.410 Sum_probs=52.9
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcE-EEEEeCCCC-----CCCCCC-eEEecCCCCChhH---HHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPI-----YPIDGA-VVLSKCDFTQPDI---QDR 127 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~~-----~~~~~~-~~~~~~D~~~~~~---~~~ 127 (229)
+++|.+||-.|+|. |..+..+++..| .+ |++++.++- ... ++ .++ +..+... ...
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G----------~~~v~~~~~~~~~~~~~~~~-g~~~vi---~~~~~~~~~~~~~ 225 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFG----------ATKVVVTDIDPSRLEFAKEL-GATHTV---NVRTEDTPESAEK 225 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----------CcEEEEECCCHHHHHHHHHc-CCcEEe---ccccccchhHHHH
Confidence 57889999887654 445555555543 34 778776541 011 22 222 2222221 333
Q ss_pred HHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 128 LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+.....+..+|+|+..... ...+..+.+.|+++|+++..
T Consensus 226 ~~~~~~~~~~d~vld~~g~-----------------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 226 IAELLGGKGPDVVIECTGA-----------------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred HHHHhCCCCCCEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence 4445556679999973311 12345678889999998753
No 350
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=88.92 E-value=2 Score=37.90 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=53.1
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCC-eEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGA-VVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~-~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+++|++||=.|+|+ |..+..+++..| ..+|++++.++-. .--++ .++...+..+......+....
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G---------~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~ 271 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAG---------ASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVT 271 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhc
Confidence 56788998887654 334444555442 2278888876410 00122 122011110112333455556
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.+..+|+|+... |.. ...+..+.+.|+++|+++..
T Consensus 272 ~g~gvDvvld~~-----g~~-----------~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 272 KGWGADIQVEAA-----GAP-----------PATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCCCEEEECC-----CCc-----------HHHHHHHHHHHHcCCEEEEE
Confidence 566799999632 110 12345577788999999863
No 351
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=88.63 E-value=5.9 Score=33.66 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=42.0
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeC
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD 143 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd 143 (229)
+||-.| |+|.++.++++.+. ..++|+++|... ..+ .+|+++.+.... .+.+..+|+|+.-
T Consensus 2 ~iLVtG-~~GfiGs~l~~~L~--------~~g~V~~~~~~~-------~~~-~~Dl~d~~~~~~---~~~~~~~D~Vih~ 61 (299)
T PRK09987 2 NILLFG-KTGQVGWELQRALA--------PLGNLIALDVHS-------TDY-CGDFSNPEGVAE---TVRKIRPDVIVNA 61 (299)
T ss_pred eEEEEC-CCCHHHHHHHHHhh--------ccCCEEEecccc-------ccc-cCCCCCHHHHHH---HHHhcCCCEEEEC
Confidence 567666 67888888888764 334788988653 124 689998764433 3334468999975
Q ss_pred CCC
Q psy1489 144 MAP 146 (229)
Q Consensus 144 ~~~ 146 (229)
++.
T Consensus 62 Aa~ 64 (299)
T PRK09987 62 AAH 64 (299)
T ss_pred Ccc
Confidence 543
No 352
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=88.23 E-value=2.4 Score=36.99 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=51.6
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+.++.+||-.|+|+ |..+..+++..+ ...|++++.++-. .-.++..+ -+..+......+.....
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G---------~~~vi~~~~s~~~~~~~~~~g~~~v--~~~~~~~~~~~l~~~~~ 253 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFG---------ASPIIAVDVRDEKLAKAKELGATHT--VNAAKEDAVAAIREITG 253 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHhCCceE--ecCCcccHHHHHHHHhC
Confidence 46788888776543 334444444432 2238888766410 00122211 12222233334545555
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+..+|+|+.-... . ..+..+.+.|+++|+++..
T Consensus 254 ~~~~d~vld~vg~---------~--------~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 254 GRGVDVVVEALGK---------P--------ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCCCCEEEEeCCC---------H--------HHHHHHHHHHhcCCEEEEE
Confidence 6779999973211 0 1345577889999998864
No 353
>PRK07578 short chain dehydrogenase; Provisional
Probab=88.11 E-value=11 Score=29.53 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=57.2
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeC
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSD 143 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd 143 (229)
++|-.|. +|+++..+++.+.. . .+|++++.++ ..+ +.|+.+.+....+.+.+ +.+|+++.+
T Consensus 2 ~vlItGa-s~giG~~la~~l~~-------~-~~vi~~~r~~-------~~~-~~D~~~~~~~~~~~~~~--~~id~lv~~ 62 (199)
T PRK07578 2 KILVIGA-SGTIGRAVVAELSK-------R-HEVITAGRSS-------GDV-QVDITDPASIRALFEKV--GKVDAVVSA 62 (199)
T ss_pred eEEEEcC-CcHHHHHHHHHHHh-------c-CcEEEEecCC-------Cce-EecCCChHHHHHHHHhc--CCCCEEEEC
Confidence 5677774 57788888877641 2 5788887654 134 78998876554444333 368999987
Q ss_pred CCCCC-CCCCcccH--HH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489 144 MAPNA-TGMREMDH--DL-ITQ----LAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 144 ~~~~~-~g~~~~d~--~~-~~~----~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+.... ....+.+. +. .++ -....++.+...++++|.+++
T Consensus 63 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~ 109 (199)
T PRK07578 63 AGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTL 109 (199)
T ss_pred CCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 75321 11111111 11 111 112345556666778888775
No 354
>PRK05993 short chain dehydrogenase; Provisional
Probab=88.00 E-value=8.8 Score=31.99 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=49.2
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCeEEecCCCCChhHHHHHHHHh---CC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAVVLSKCDFTQPDIQDRLVTIL---KD 134 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~~~~~~D~~~~~~~~~i~~~~---~~ 134 (229)
+.+||-.|+ +|+++..+++.+.. ...+|++++.++- .. -.++.++ ..|+++......+.+.. ..
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~-------~G~~Vi~~~r~~~~~~~l~~~~~~~~-~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQS-------DGWRVFATCRKEEDVAALEAEGLEAF-QLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHCCceEE-EccCCCHHHHHHHHHHHHHHcC
Confidence 567888886 57788887776642 2358999887751 11 1356778 89999976444333222 12
Q ss_pred CCccEEEeCCCC
Q psy1489 135 DKLDVVLSDMAP 146 (229)
Q Consensus 135 ~~~D~V~sd~~~ 146 (229)
+..|+|+.++..
T Consensus 75 g~id~li~~Ag~ 86 (277)
T PRK05993 75 GRLDALFNNGAY 86 (277)
T ss_pred CCccEEEECCCc
Confidence 478999998653
No 355
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=87.90 E-value=4.1 Score=34.96 Aligned_cols=95 Identities=20% Similarity=0.259 Sum_probs=53.2
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCC-eEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGA-VVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~-~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+.++.+||-.|+|. |..+..+++..+ ...|++++.++. ..+ .++ .++ +..+.. ...+....
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G---------~~~v~~~~~~~~~~~~l~~~g~~~~~---~~~~~~-~~~~~~~~ 223 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILG---------AKRVIAVDIDDEKLAVARELGADDTI---NPKEED-VEKVRELT 223 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHHcCCCEEe---cCcccc-HHHHHHHh
Confidence 46788999997644 445555555543 123888876541 000 122 222 222222 33455555
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.+..+|+|+..... ...+..+.+.|+++|+++..
T Consensus 224 ~~~~~d~vld~~g~-----------------~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 224 EGRGADLVIEAAGS-----------------PATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCCCCEEEECCCC-----------------HHHHHHHHHHhhcCCEEEEE
Confidence 55679999973211 12345678889999998764
No 356
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=87.76 E-value=3 Score=35.85 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=51.3
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcE-EEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
..+|.+||-.|+|+ |..+..+++..+ .+ |++++.++.. .-.++..+ -|..+......+....
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G----------~~~v~~~~~~~~~~~~~~~~g~~~~--v~~~~~~~~~~l~~~~ 226 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASG----------AYPVIVSDPNEYRLELAKKMGATYV--VNPFKEDVVKEVADLT 226 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----------CcEEEEECCCHHHHHHHHHhCCcEE--EcccccCHHHHHHHhc
Confidence 45788888866542 333344444432 34 7888665410 00122211 1222233334454445
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.+..+|+|+..... ...+..+.+.|+++|+++.-
T Consensus 227 ~~~~~d~vld~~g~-----------------~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 227 DGEGVDVFLEMSGA-----------------PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCCCCEEEECCCC-----------------HHHHHHHHHhhcCCCEEEEE
Confidence 56679999973210 12355678889999998764
No 357
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.71 E-value=2.6 Score=39.00 Aligned_cols=34 Identities=32% Similarity=0.346 Sum_probs=26.4
Q ss_pred CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
++.+|+-+|||+ |..+..+++.+| +.|+++|.++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG----------A~V~v~d~~~ 197 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG----------AIVRAFDTRP 197 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEeCCH
Confidence 468999999999 556666666654 5799999886
No 358
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.60 E-value=3 Score=35.86 Aligned_cols=93 Identities=14% Similarity=0.190 Sum_probs=53.2
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCCC---CCCe-EEecCCCCC-hhHHHHHH
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYPI---DGAV-VLSKCDFTQ-PDIQDRLV 129 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~~---~~~~-~~~~~D~~~-~~~~~~i~ 129 (229)
+++|++||=.|+ |. |..+..+++..| .+|++++.++ ...+ -++. ++ |..+ .+....+.
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G----------~~Vi~~~~~~~~~~~~~~~lGa~~vi---~~~~~~~~~~~i~ 215 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKG----------CYVVGSAGSDEKVDLLKNKLGFDDAF---NYKEEPDLDAALK 215 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHhcCCceeE---EcCCcccHHHHHH
Confidence 578999999887 33 556666666654 5788887664 1111 1222 22 1111 12233344
Q ss_pred HHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 130 TILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 130 ~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
... +..+|+|+... | ...+..+.+.|+++|+++..
T Consensus 216 ~~~-~~gvd~v~d~~-----g-------------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 216 RYF-PNGIDIYFDNV-----G-------------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred HhC-CCCcEEEEECC-----C-------------HHHHHHHHHHhccCcEEEEe
Confidence 433 35799998622 1 02345578889999999853
No 359
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=87.46 E-value=4.2 Score=35.05 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=51.9
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--CC--CCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--PI--DGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~~--~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+.++.+||-+|+|+ |..+..+++..+ ..+|+.++.++-. .+ -++..+ -+-.+......+.....
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G---------~~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~ 241 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALG---------PANIIVVDIDEAKLEAAKAAGADVV--VNGSDPDAAKRIIKAAG 241 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHhCCcEE--ecCCCccHHHHHHHHhC
Confidence 44788999987644 444444555543 2368888766410 00 122221 12222233333444444
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+ .+|+|+..... ...+..+.+.|+++|+++.
T Consensus 242 ~-~~d~vid~~g~-----------------~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 242 G-GVDAVIDFVNN-----------------SATASLAFDILAKGGKLVL 272 (350)
T ss_pred C-CCcEEEECCCC-----------------HHHHHHHHHHhhcCCeEEE
Confidence 4 79999973210 1245668888999999885
No 360
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=87.45 E-value=1.4 Score=38.99 Aligned_cols=90 Identities=11% Similarity=0.042 Sum_probs=52.0
Q ss_pred CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-----CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-----IDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-----~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
++|++||-.|+|+ |..+..+|+..| .+|+++|.++-.. --++..+ -|..+. ..+.+..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G----------a~Vi~~~~~~~~~~~~a~~lGa~~~--i~~~~~---~~v~~~~- 240 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG----------LRVTVISRSSEKEREAIDRLGADSF--LVTTDS---QKMKEAV- 240 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC----------CeEEEEeCChHHhHHHHHhCCCcEE--EcCcCH---HHHHHhh-
Confidence 5789999999876 555566666654 4788888764110 1133221 122221 2233333
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
..+|+|+--. |. ...+..+.+.|++||+++..
T Consensus 241 -~~~D~vid~~-----G~------------~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 241 -GTMDFIIDTV-----SA------------EHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred -CCCcEEEECC-----Cc------------HHHHHHHHHhhcCCCEEEEE
Confidence 2589998622 21 12455678889999999864
No 361
>KOG2920|consensus
Probab=87.28 E-value=0.59 Score=39.59 Aligned_cols=36 Identities=19% Similarity=-0.016 Sum_probs=27.5
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
.-.|++|||||||+|--.+.+... ....+...|.+.
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~----------~~~~~~fqD~na 149 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVK----------GAVSVHFQDFNA 149 (282)
T ss_pred EecCceeEecCCcccccchhhhhh----------ccceeeeEecch
Confidence 346899999999999888887654 235677777775
No 362
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=87.21 E-value=14 Score=31.82 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=46.4
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------PIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
|.+||-.|+ +|.++..+++.+...+ ...+|+++|.++.. ...++.++ .+|+++...... .+.
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g-----~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v-~~Dl~d~~~l~~---~~~ 73 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENY-----NPKKIIIYSRDELKQWEMQQKFPAPCLRFF-IGDVRDKERLTR---ALR 73 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhC-----CCcEEEEEcCChhHHHHHHHHhCCCcEEEE-EccCCCHHHHHH---HHh
Confidence 678887775 6888888887664110 12478888765421 11357788 899999764433 232
Q ss_pred CCCccEEEeCCCC
Q psy1489 134 DDKLDVVLSDMAP 146 (229)
Q Consensus 134 ~~~~D~V~sd~~~ 146 (229)
.+|+|+..+..
T Consensus 74 --~iD~Vih~Ag~ 84 (324)
T TIGR03589 74 --GVDYVVHAAAL 84 (324)
T ss_pred --cCCEEEECccc
Confidence 48999987653
No 363
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=87.12 E-value=4.5 Score=34.77 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=50.9
Q ss_pred cCCCCeeEeecCCCCchHHH---HHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCe-EEecCCCCChhHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQV---AVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAV-VLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~---la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~-~~~~~D~~~~~~~~~i~~ 130 (229)
+.++.+||=.|+ |..+.. +++..+ ..+|++++.++.. .--++. ++ |..+.+....+..
T Consensus 164 ~~~g~~vlI~g~--g~~g~~~~~~a~~~G---------~~~v~~~~~~~~~~~~~~~~g~~~~v---~~~~~~~~~~i~~ 229 (345)
T cd08286 164 VKPGDTVAIVGA--GPVGLAALLTAQLYS---------PSKIIMVDLDDNRLEVAKKLGATHTV---NSAKGDAIEQVLE 229 (345)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcC---------CCeEEEEcCCHHHHHHHHHhCCCcee---ccccccHHHHHHH
Confidence 467888888775 454444 444432 2478888876511 001221 22 2222223333444
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
...+..+|+|+.-. +. ...+..+.+.|+++|+++.
T Consensus 230 ~~~~~~~d~vld~~-----g~------------~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 230 LTDGRGVDVVIEAV-----GI------------PATFELCQELVAPGGHIAN 264 (345)
T ss_pred HhCCCCCCEEEECC-----CC------------HHHHHHHHHhccCCcEEEE
Confidence 55566799999622 10 1234557788999999975
No 364
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.73 E-value=13 Score=29.77 Aligned_cols=115 Identities=9% Similarity=0.056 Sum_probs=62.8
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------PIDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------~~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
.+++||-.|++ |+++..+++.+.. ...+|++++.++- . ...++.++ .+|+.+.+....+.+.
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALK-------EGAQVCINSRNENKLKRMKKTLSKYGNIHYV-VGDVSSTESARNVIEK 74 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEE-ECCCCCHHHHHHHHHH
Confidence 36789999985 7777777776631 2348999988651 0 11246778 8999987644433222
Q ss_pred hC--CCCccEEEeCCCCCCC-CCCcccHHHH-HH----HHHHHHHHHHHcccCCCEEEEee
Q psy1489 132 LK--DDKLDVVLSDMAPNAT-GMREMDHDLI-TQ----LAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 132 ~~--~~~~D~V~sd~~~~~~-g~~~~d~~~~-~~----~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
.. -+.+|.++........ ...+.+.+.. ++ -....++.....++++|.+++..
T Consensus 75 ~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 11 1357988876642111 1111111100 00 11123455556677888887643
No 365
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.66 E-value=3.8 Score=35.26 Aligned_cols=95 Identities=24% Similarity=0.273 Sum_probs=51.6
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCc-EEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKG-LVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~-~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
..+|.+||-.|+|. |..+..+++..+ . +|++++-++.. .-.++..+ -+....+.. .+....
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G----------~~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~ 227 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAG----------ASLVIASDPNPYRLELAKKMGADVV--INPREEDVV-EVKSVT 227 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----------CcEEEEECCCHHHHHHHHHhCccee--eCcccccHH-HHHHHc
Confidence 35788998877643 444555555543 3 67777654310 00122111 122222222 344555
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+++.+|+|+..... ...+..+.+.|+++|+++..
T Consensus 228 ~~~~vd~vld~~g~-----------------~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 228 DGTGVDVVLEMSGN-----------------PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCCCCCEEEECCCC-----------------HHHHHHHHHHhccCCEEEEE
Confidence 56789999973310 12345577889999998753
No 366
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.59 E-value=17 Score=30.01 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=49.7
Q ss_pred CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-----CC----CC--CCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-----IY----PI--DGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-----~~----~~--~~~~~~~~~D~~~~~~~~~i 128 (229)
.++.+|-.|+++ ++++..+++.+.. ...+|+.++.+. +. .+ ..+.++ +.|+.+.+....+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~-------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~d~~~v~~~ 77 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHN-------AGAKLVFTYAGERLEKEVRELADTLEGQESLLL-PCDVTSDEEITAC 77 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH-------CCCEEEEecCcccchHHHHHHHHHcCCCceEEE-ecCCCCHHHHHHH
Confidence 467899999984 8888888887752 224777765432 10 11 235677 8999998655444
Q ss_pred HHHhCC--CCccEEEeCCC
Q psy1489 129 VTILKD--DKLDVVLSDMA 145 (229)
Q Consensus 129 ~~~~~~--~~~D~V~sd~~ 145 (229)
.+.+.+ +.+|+++.++.
T Consensus 78 ~~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred HHHHHHhCCCccEEEECcc
Confidence 332221 57999998764
No 367
>PRK07326 short chain dehydrogenase; Provisional
Probab=86.25 E-value=11 Score=30.35 Aligned_cols=77 Identities=14% Similarity=0.076 Sum_probs=48.8
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC---CCCeEEecCCCCChhHHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI---DGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~---~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
.+.+||-.| |+|+++..+++++.. ...+|++++.++- . .+ ..+.++ ++|+.+..........
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~-------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLA-------EGYKVAITARDQKELEEAAAELNNKGNVLGL-AADVRDEADVQRAVDA 75 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHH-------CCCEEEEeeCCHHHHHHHHHHHhccCcEEEE-EccCCCHHHHHHHHHH
Confidence 357888888 578888888876642 2357899887651 0 11 356777 8999987644332221
Q ss_pred h-C-CCCccEEEeCCCC
Q psy1489 132 L-K-DDKLDVVLSDMAP 146 (229)
Q Consensus 132 ~-~-~~~~D~V~sd~~~ 146 (229)
+ . -+.+|.|+..+..
T Consensus 76 ~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 76 IVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 1 1 1368999987653
No 368
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=86.21 E-value=4.5 Score=35.24 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=52.3
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCC-eEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGA-VVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~-~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+.++.+||-.|+|. |..+..+++..+ ...|++++.++- . .--++ .++ +.........+....
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G---------~~~Vi~~~~~~~~~~~~~~~g~~~vv---~~~~~~~~~~l~~~~ 247 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAG---------ASRIIAVDPVPEKLELARRFGATHTV---NASEDDAVEAVRDLT 247 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCcEEEEcCCHHHHHHHHHhCCeEEe---CCCCccHHHHHHHHc
Confidence 46788999887643 444455555543 224888876641 0 00122 222 222222333454445
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
++..+|+++..... ...+..+.+.|+++|+++.
T Consensus 248 ~~~~vd~vld~~~~-----------------~~~~~~~~~~l~~~G~~v~ 280 (363)
T cd08279 248 DGRGADYAFEAVGR-----------------AATIRQALAMTRKGGTAVV 280 (363)
T ss_pred CCCCCCEEEEcCCC-----------------hHHHHHHHHHhhcCCeEEE
Confidence 55679999863211 1234567888999999875
No 369
>PRK06523 short chain dehydrogenase; Provisional
Probab=86.12 E-value=17 Score=29.66 Aligned_cols=76 Identities=12% Similarity=0.178 Sum_probs=48.3
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC-CCCeEEecCCCCChhHHHHHHHHh-C-CCCc
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI-DGAVVLSKCDFTQPDIQDRLVTIL-K-DDKL 137 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~-~~~~~~~~~D~~~~~~~~~i~~~~-~-~~~~ 137 (229)
+|++||-.|+ +|+++..+++.+.. ...+|+.++.++-... ..+.++ ++|+.+.+....+...+ . -+.+
T Consensus 8 ~~k~vlItGa-s~gIG~~ia~~l~~-------~G~~v~~~~r~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~~~~~~i 78 (260)
T PRK06523 8 AGKRALVTGG-TKGIGAATVARLLE-------AGARVVTTARSRPDDLPEGVEFV-AADLTTAEGCAAVARAVLERLGGV 78 (260)
T ss_pred CCCEEEEECC-CCchhHHHHHHHHH-------CCCEEEEEeCChhhhcCCceeEE-ecCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678998885 45677777766542 2358888887652222 246677 89999976544332221 1 1468
Q ss_pred cEEEeCCC
Q psy1489 138 DVVLSDMA 145 (229)
Q Consensus 138 D~V~sd~~ 145 (229)
|+|+.+..
T Consensus 79 d~vi~~ag 86 (260)
T PRK06523 79 DILVHVLG 86 (260)
T ss_pred CEEEECCc
Confidence 99998764
No 370
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.87 E-value=7.4 Score=28.61 Aligned_cols=93 Identities=27% Similarity=0.287 Sum_probs=57.6
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEe
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~s 142 (229)
.+|+++|-|- +... |+++.. ....|+++|+.+.....++.+. ..|+++++.. .. ...|+|.|
T Consensus 15 gkVvEVGiG~--~~~V-A~~L~e-------~g~dv~atDI~~~~a~~g~~~v-~DDitnP~~~-----iY--~~A~lIYS 76 (129)
T COG1255 15 GKVVEVGIGF--FLDV-AKRLAE-------RGFDVLATDINEKTAPEGLRFV-VDDITNPNIS-----IY--EGADLIYS 76 (129)
T ss_pred CcEEEEccch--HHHH-HHHHHH-------cCCcEEEEecccccCcccceEE-EccCCCccHH-----Hh--hCccceee
Confidence 4899998653 3333 333331 1258999999985444789999 9999998632 12 35899999
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189 (229)
Q Consensus 143 d~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~ 189 (229)
--+| . ++...+++.+.. -|-.++++-+.+..
T Consensus 77 iRpp---------p----El~~~ildva~a---Vga~l~I~pL~Ge~ 107 (129)
T COG1255 77 IRPP---------P----ELQSAILDVAKA---VGAPLYIKPLTGEP 107 (129)
T ss_pred cCCC---------H----HHHHHHHHHHHh---hCCCEEEEecCCCC
Confidence 5544 1 223344444432 35667777666554
No 371
>PRK08265 short chain dehydrogenase; Provisional
Probab=85.66 E-value=19 Score=29.66 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=47.3
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------CC-CCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------PI-DGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~~-~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
.+.++|-.|+ +|+++..+++.+.. ...+|+.+|.++-. .. ..+.++ ++|+.+.+....+.+...
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 5 AGKVAIVTGG-ATLIGAAVARALVA-------AGARVAIVDIDADNGAAVAASLGERARFI-ATDITDDAAIERAVATVV 75 (261)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHhCCeeEEE-EecCCCHHHHHHHHHHHH
Confidence 3567888885 56677777766542 23488888887510 11 246677 899998764433322111
Q ss_pred --CCCccEEEeCCCC
Q psy1489 134 --DDKLDVVLSDMAP 146 (229)
Q Consensus 134 --~~~~D~V~sd~~~ 146 (229)
-+..|+++.++..
T Consensus 76 ~~~g~id~lv~~ag~ 90 (261)
T PRK08265 76 ARFGRVDILVNLACT 90 (261)
T ss_pred HHhCCCCEEEECCCC
Confidence 1468999987653
No 372
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=85.05 E-value=21 Score=30.30 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=46.3
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC----------CCCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP----------IDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~----------~~~~~~~~~~D~~~~~~~~~i 128 (229)
.+++||-.| |+|.++..+++++-. ...+|++++.++. .. ..++.++ .+|+++......
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~d~~~~~~- 73 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLF-------RGYTINATVRDPKDRKKTDHLLALDGAKERLKLF-KADLLDEGSFEL- 73 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHH-------CCCEEEEEEcCCcchhhHHHHHhccCCCCceEEE-eCCCCCchHHHH-
Confidence 467888888 678888888887642 2246766654431 00 1246778 899998764333
Q ss_pred HHHhCCCCccEEEeCCCC
Q psy1489 129 VTILKDDKLDVVLSDMAP 146 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~ 146 (229)
.+. .+|+|+..+..
T Consensus 74 --~~~--~~d~vih~A~~ 87 (325)
T PLN02989 74 --AID--GCETVFHTASP 87 (325)
T ss_pred --HHc--CCCEEEEeCCC
Confidence 232 48999987764
No 373
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=85.05 E-value=0.67 Score=38.67 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=25.4
Q ss_pred cCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 56 IKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 56 ~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
|..+.+..+|+|||||-==++....... +...++|+|++.
T Consensus 100 f~~~~~p~sVlDigCGlNPlalp~~~~~---------~~a~Y~a~DID~ 139 (251)
T PF07091_consen 100 FGRIPPPDSVLDIGCGLNPLALPWMPEA---------PGATYIAYDIDS 139 (251)
T ss_dssp CCCS---SEEEEET-TTCHHHHHTTTSS---------TT-EEEEEESBH
T ss_pred HhcCCCCchhhhhhccCCceehhhcccC---------CCcEEEEEeCCH
Confidence 4455567899999999876666543221 456999999986
No 374
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.94 E-value=21 Score=29.64 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=49.7
Q ss_pred CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---------CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---------YPIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---------~~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
+++.+|=.|++. ++++..+++.+.. ...+|+.++.+.- ...+.+.++ ..|+.+.+....+..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~-------~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHR-------EGAELAFTYQNDKLKGRVEEFAAQLGSDIVL-PCDVAEDASIDAMFA 76 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHH-------CCCEEEEEecchhHHHHHHHHHhccCCceEe-ecCCCCHHHHHHHHH
Confidence 467889999987 4888887877642 2247777765420 012335567 899999775554433
Q ss_pred HhCC--CCccEEEeCCCC
Q psy1489 131 ILKD--DKLDVVLSDMAP 146 (229)
Q Consensus 131 ~~~~--~~~D~V~sd~~~ 146 (229)
...+ +.+|+++.++..
T Consensus 77 ~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 77 ELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred HHHhhcCCCCEEEECCcc
Confidence 2211 468999998753
No 375
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=84.87 E-value=6.8 Score=33.41 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=48.8
Q ss_pred CCCeeEee--cCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----CCCCCC-eEEecCCCCChhHHHHHHHH
Q psy1489 61 PGLKVLDC--GAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----YPIDGA-VVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 61 ~g~~VLDl--GcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~~~~~~-~~~~~~D~~~~~~~~~i~~~ 131 (229)
++..+|=+ |+|+ |..+..+++..+ .+|++++.++- ..+ ++ .++ |..+.+....+.+.
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G----------~~vi~~~~~~~~~~~~~~~-g~~~~i---~~~~~~~~~~v~~~ 207 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG----------IKVINIVRRKEQVDLLKKI-GAEYVL---NSSDPDFLEDLKEL 207 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHc-CCcEEE---ECCCccHHHHHHHH
Confidence 34555554 4444 445555565543 57888887651 111 22 222 22223333445555
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
..+..+|+|+... |. .....+.+.|+++|++++.-
T Consensus 208 ~~~~~~d~vid~~-----g~-------------~~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 208 IAKLNATIFFDAV-----GG-------------GLTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred hCCCCCcEEEECC-----Cc-------------HHHHHHHHhhCCCCEEEEEE
Confidence 5556799999622 21 11223566789999987643
No 376
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.77 E-value=21 Score=29.39 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=66.6
Q ss_pred ccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC----------CCCCCeEEecCCCCChhHH
Q psy1489 58 FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY----------PIDGAVVLSKCDFTQPDIQ 125 (229)
Q Consensus 58 ~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~----------~~~~~~~~~~~D~~~~~~~ 125 (229)
+++.+.++.|+||--+.+..+|.+.. +...++++|+++ .. ..+.++.. .+|-..
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~~---------~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr-~~dgl~---- 78 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKNN---------PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVR-LGDGLA---- 78 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhcC---------CcceEEEeecccCHHHHHHHHHHhcCCcceEEEe-ccCCcc----
Confidence 35567789999999999999998865 667899999997 10 01223333 444322
Q ss_pred HHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhh
Q psy1489 126 DRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200 (229)
Q Consensus 126 ~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~ 200 (229)
.+-.+..+|+|+..++- | .+...+|.+..+.|+.=-++|+ -+-.+...+++.+...
T Consensus 79 ----~l~~~d~~d~ivIAGMG---G----------~lI~~ILee~~~~l~~~~rlIL--QPn~~~~~LR~~L~~~ 134 (226)
T COG2384 79 ----VLELEDEIDVIVIAGMG---G----------TLIREILEEGKEKLKGVERLIL--QPNIHTYELREWLSAN 134 (226)
T ss_pred ----ccCccCCcCEEEEeCCc---H----------HHHHHHHHHhhhhhcCcceEEE--CCCCCHHHHHHHHHhC
Confidence 11224468877754321 1 2344666777777764445554 2233456666666554
No 377
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=84.67 E-value=5.7 Score=34.10 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=53.6
Q ss_pred CCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 60 RPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 60 ~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
.+|++||-.|+|. |..+..+++..+ ..+|++++.++.. .--+++.+ -+..+.+....+.....+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G---------~~~v~~~~~~~~~~~~~~~lg~~~~--~~~~~~~~~~~~~~~~~~ 230 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVG---------ARHVVITDVNEYRLELARKMGATRA--VNVAKEDLRDVMAELGMT 230 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC---------CCEEEEEcCCHHHHHHHHHhCCcEE--ecCccccHHHHHHHhcCC
Confidence 4788998877654 444455555543 2267777655410 00122211 133333334445444555
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
..+|+|+.-... ...+..+.+.|+++|+++..-
T Consensus 231 ~~~d~v~d~~g~-----------------~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 231 EGFDVGLEMSGA-----------------PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CCCCEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEEe
Confidence 679999972210 124555778899999998753
No 378
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.42 E-value=23 Score=29.63 Aligned_cols=78 Identities=21% Similarity=0.139 Sum_probs=49.4
Q ss_pred CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-----CC----CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-----IY----PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-----~~----~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.++.+|-.|++. ++++..+++.+.. ...+|+.++.+. .. .......+ +.|+.+.+....+.+
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~-------~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~-~~Dv~d~~~v~~~~~ 75 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFE-------QGAELAFTYLNEALKKRVEPIAQELGSDYVY-ELDVSKPEHFKSLAE 75 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHH-------CCCEEEEEecCHHHHHHHHHHHHhcCCceEE-EecCCCHHHHHHHHH
Confidence 367889999874 6888888877652 224787777652 11 11111466 899999765544433
Q ss_pred HhC--CCCccEEEeCCCC
Q psy1489 131 ILK--DDKLDVVLSDMAP 146 (229)
Q Consensus 131 ~~~--~~~~D~V~sd~~~ 146 (229)
.+. -+.+|+++.++..
T Consensus 76 ~i~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 76 SLKKDLGKIDFIVHSVAF 93 (274)
T ss_pred HHHHHcCCCCEEEECCcc
Confidence 221 2579999998753
No 379
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.34 E-value=23 Score=29.54 Aligned_cols=78 Identities=21% Similarity=0.157 Sum_probs=48.1
Q ss_pred CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C----CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y----PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~----~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.++.+|-.|++. ++++..+++.+.. ...+|+.++.+.- . .......+ +.|+.+.+....+.+
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~-------~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~-~~Dv~d~~~v~~~~~ 77 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAA-------QGAELAFTYQGEALGKRVKPLAESLGSDFVL-PCDVEDIASVDAVFE 77 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHh-------CCCEEEEecCchHHHHHHHHHHHhcCCceEE-eCCCCCHHHHHHHHH
Confidence 467899999886 4777777776642 2247777765430 0 11223456 899999764443332
Q ss_pred HhC--CCCccEEEeCCCC
Q psy1489 131 ILK--DDKLDVVLSDMAP 146 (229)
Q Consensus 131 ~~~--~~~~D~V~sd~~~ 146 (229)
.+. -+..|+++.++..
T Consensus 78 ~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 78 ALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred HHHHHhCCCCEEEECCcc
Confidence 221 1579999998753
No 380
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=84.34 E-value=6.5 Score=31.54 Aligned_cols=65 Identities=17% Similarity=0.098 Sum_probs=43.8
Q ss_pred cCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCC
Q psy1489 69 GAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAP 146 (229)
Q Consensus 69 GcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~ 146 (229)
=|.+|..+..+++.... ....|+++=.++ +...+++.++ +.|+.++..... .+ ..||+|++....
T Consensus 6 IgAsG~~Gs~i~~EA~~-------RGHeVTAivRn~~K~~~~~~~~i~-q~Difd~~~~a~---~l--~g~DaVIsA~~~ 72 (211)
T COG2910 6 IGASGKAGSRILKEALK-------RGHEVTAIVRNASKLAARQGVTIL-QKDIFDLTSLAS---DL--AGHDAVISAFGA 72 (211)
T ss_pred EecCchhHHHHHHHHHh-------CCCeeEEEEeChHhccccccceee-cccccChhhhHh---hh--cCCceEEEeccC
Confidence 35678777777765421 345899998877 4444778888 999999754322 22 369999996644
No 381
>PRK06182 short chain dehydrogenase; Validated
Probab=84.26 E-value=14 Score=30.49 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=49.1
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCC--CCCCeEEecCCCCChhHHHHHHHHh--CCC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYP--IDGAVVLSKCDFTQPDIQDRLVTIL--KDD 135 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~--~~~~~~~~~~D~~~~~~~~~i~~~~--~~~ 135 (229)
+.++|=.|+ +|+++..+++.+.. ...+|++++.++ ... -.++.++ .+|+++.+....+.+.+ ..+
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~-------~G~~V~~~~r~~~~l~~~~~~~~~~~-~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAA-------QGYTVYGAARRVDKMEDLASLGVHPL-SLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHhCCCeEE-EeeCCCHHHHHHHHHHHHHhcC
Confidence 567887785 56788888876641 235888888765 111 1357788 89999976554433221 124
Q ss_pred CccEEEeCCCC
Q psy1489 136 KLDVVLSDMAP 146 (229)
Q Consensus 136 ~~D~V~sd~~~ 146 (229)
.+|+++.++..
T Consensus 74 ~id~li~~ag~ 84 (273)
T PRK06182 74 RIDVLVNNAGY 84 (273)
T ss_pred CCCEEEECCCc
Confidence 68999998754
No 382
>PRK07454 short chain dehydrogenase; Provisional
Probab=84.11 E-value=17 Score=29.27 Aligned_cols=76 Identities=13% Similarity=0.026 Sum_probs=49.0
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--C--------CCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--P--------IDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~--------~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.+.++|-.|+ +|+++..+++++.. ...+|+.++.++-. . -.++.++ .+|+++.+....+.+
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~ 75 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAK-------AGWDLALVARSQDALEALAAELRSTGVKAAAY-SIDLSNPEAIAPGIA 75 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEE-EccCCCHHHHHHHHH
Confidence 4567888884 78888888887742 23489999887510 0 1246678 899999765433322
Q ss_pred HhC--CCCccEEEeCCC
Q psy1489 131 ILK--DDKLDVVLSDMA 145 (229)
Q Consensus 131 ~~~--~~~~D~V~sd~~ 145 (229)
.+. -+..|+|+.++.
T Consensus 76 ~~~~~~~~id~lv~~ag 92 (241)
T PRK07454 76 ELLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 211 146899998764
No 383
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.03 E-value=3 Score=39.80 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=59.2
Q ss_pred CCeeEeecCCCCchHHHHHHHHhc-cCCCC--CCCCcEEEEEeCCCCCC---------------------------CCCC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNS-HGYDS--KQPKGLVLSVDKLPIYP---------------------------IDGA 111 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~-~~~~~--~~~~~~v~gvD~~~~~~---------------------------~~~~ 111 (229)
.-+|+|+|-|+|.....+.+.... ....+ ....-+++++|..|+.. ++++
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 478999999999876666654310 00001 00124899999765310 1222
Q ss_pred ------------eEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCE
Q psy1489 112 ------------VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGAD 179 (229)
Q Consensus 112 ------------~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~ 179 (229)
+.. .+|+.+ .+.+ + ...||+++.|+.. +...+++ ....++..+.++++|||+
T Consensus 138 ~~~~~~~~~~~l~l~-~gd~~~-----~~~~-~-~~~~d~~~lD~Fs-P~~np~~-------W~~~~~~~l~~~~~~~~~ 201 (662)
T PRK01747 138 HRLLFDDGRVTLDLW-FGDANE-----LLPQ-L-DARADAWFLDGFA-PAKNPDM-------WSPNLFNALARLARPGAT 201 (662)
T ss_pred eEEEecCCcEEEEEE-ecCHHH-----HHHh-c-cccccEEEeCCCC-CccChhh-------ccHHHHHHHHHHhCCCCE
Confidence 122 344332 2222 2 2469999999742 1111111 124678889999999999
Q ss_pred EEEe
Q psy1489 180 CLIK 183 (229)
Q Consensus 180 ~v~~ 183 (229)
|+..
T Consensus 202 ~~t~ 205 (662)
T PRK01747 202 LATF 205 (662)
T ss_pred EEEe
Confidence 9853
No 384
>PLN02702 L-idonate 5-dehydrogenase
Probab=83.94 E-value=9.3 Score=33.23 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=51.6
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHH--
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTI-- 131 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~-- 131 (229)
+.++.+||-+|+|+ |..+..+++..+ ...|+++|.++. ... -++...-.-+-.+.+....+...
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G---------~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFG---------APRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhh
Confidence 45788999887644 444455555543 235788887641 100 12221101111112222223222
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.....+|+|+..... ...+..+.+.|+++|+++..
T Consensus 250 ~~~~~~d~vid~~g~-----------------~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 250 AMGGGIDVSFDCVGF-----------------NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred hcCCCCCEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence 224579999973210 12456688889999998753
No 385
>KOG2352|consensus
Probab=83.81 E-value=4.3 Score=37.03 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=72.7
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCCC--CCeEEecCCCCChh------HHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPID--GAVVLSKCDFTQPD------IQDRLVTI 131 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~~--~~~~~~~~D~~~~~------~~~~i~~~ 131 (229)
.+..+|-+|-|.|++...+-... |..++++|++.| |..+. ...+. +.|-.+.. ...+....
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~---------p~~~i~~ve~dP~~l~va~q~f~f~-q~~r~~V~i~dGl~~~~~~~k~ 364 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSL---------PKFQITAVEIDPEMLEVATQYFGFM-QSDRNKVHIADGLDFLQRTAKS 364 (482)
T ss_pred ccCcEEEEecCCCccccceeeec---------CccceeEEEEChhHhhccHhhhchh-hhhhhhhhHhhchHHHHHHhhc
Confidence 35678888999999988876655 567999999998 32221 22222 22211111 11111111
Q ss_pred -hCCCCccEEEeCCCC-CCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCC--CChHHHHHHHHhhC
Q psy1489 132 -LKDDKLDVVLSDMAP-NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDG--RNRPQLEESITRFY 201 (229)
Q Consensus 132 -~~~~~~D~V~sd~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~--~~~~~~~~~l~~~F 201 (229)
-.+..||+++-|... +..|..-... ..+...+|..+...|.|-|.|++..-.. .-..++..-|...|
T Consensus 365 ~~~~~~~dvl~~dvds~d~~g~~~pp~---~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf 435 (482)
T KOG2352|consen 365 QQEDICPDVLMVDVDSKDSHGMQCPPP---AFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVF 435 (482)
T ss_pred cccccCCcEEEEECCCCCcccCcCCch---HHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhh
Confidence 135689999987632 2222222222 2344577888899999999998865332 22344445454444
No 386
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.81 E-value=24 Score=29.40 Aligned_cols=78 Identities=21% Similarity=0.149 Sum_probs=49.1
Q ss_pred CCCeeEeecCC-CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-----C----CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAA-PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-----I----YPIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcG-pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-----~----~~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.++.+|-.|++ .++++..+++.+.. ...+|+.++.+. . ..+.....+ +.|+.+.+....+..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~-------~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~v~~~~~ 80 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRA-------AGAELAFTYQGDALKKRVEPLAAELGAFVAG-HCDVTDEASIDAVFE 80 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHH-------CCCEEEEEcCchHHHHHHHHHHHhcCCceEE-ecCCCCHHHHHHHHH
Confidence 46788989997 58888888887752 224776665432 0 112234567 899999765544433
Q ss_pred HhC--CCCccEEEeCCCC
Q psy1489 131 ILK--DDKLDVVLSDMAP 146 (229)
Q Consensus 131 ~~~--~~~~D~V~sd~~~ 146 (229)
.+. -+..|+++.++..
T Consensus 81 ~~~~~~g~iD~lv~nAG~ 98 (272)
T PRK08159 81 TLEKKWGKLDFVVHAIGF 98 (272)
T ss_pred HHHHhcCCCcEEEECCcc
Confidence 222 2468999998753
No 387
>PLN02240 UDP-glucose 4-epimerase
Probab=83.72 E-value=27 Score=29.96 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=47.0
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--------------CCCCCeEEecCCCCChhHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--------------PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--------------~~~~~~~~~~~D~~~~~~~~~ 127 (229)
+.+||-.| |+|.++.++++.+.. ...+|+++|...-. ...++.++ .+|+++......
T Consensus 5 ~~~vlItG-atG~iG~~l~~~L~~-------~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~l~~ 75 (352)
T PLN02240 5 GRTILVTG-GAGYIGSHTVLQLLL-------AGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFH-KVDLRDKEALEK 75 (352)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHH-------CCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEE-ecCcCCHHHHHH
Confidence 56888888 678888888877642 22479998753210 01256778 899998754433
Q ss_pred HHHHhCCCCccEEEeCCC
Q psy1489 128 LVTILKDDKLDVVLSDMA 145 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~ 145 (229)
.+....+|.|+....
T Consensus 76 ---~~~~~~~d~vih~a~ 90 (352)
T PLN02240 76 ---VFASTRFDAVIHFAG 90 (352)
T ss_pred ---HHHhCCCCEEEEccc
Confidence 233346899988654
No 388
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=83.72 E-value=0.93 Score=36.35 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=24.8
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
..+|+.|||--||+|.-+.++. .++ -+.+|+|+++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~-~l~----------R~~ig~E~~~ 223 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAE-ELG----------RRYIGIEIDE 223 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHH-HTT-----------EEEEEESSH
T ss_pred hccceeeehhhhccChHHHHHH-HcC----------CeEEEEeCCH
Confidence 3579999999999998776644 443 4799999986
No 389
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=83.70 E-value=19 Score=28.08 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=63.7
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-CCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccE
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-IYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV 139 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~ 139 (229)
++.+|+=|||=+-... +.+... +..+++-.|... .....+-.+. .=|...+. .+...+ .++||+
T Consensus 25 ~~~~iaclstPsl~~~--l~~~~~--------~~~~~~Lle~D~RF~~~~~~~F~-fyD~~~p~---~~~~~l-~~~~d~ 89 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEA--LKKESK--------PRIQSFLLEYDRRFEQFGGDEFV-FYDYNEPE---ELPEEL-KGKFDV 89 (162)
T ss_pred CCCEEEEEeCcHHHHH--HHhhcC--------CCccEEEEeecchHHhcCCcceE-ECCCCChh---hhhhhc-CCCceE
Confidence 4678998876544332 222111 445777777765 2222211355 56776653 244445 579999
Q ss_pred EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCChHHHHHHHHhhCCeeEEEcCCCCCC
Q psy1489 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRS 214 (229)
Q Consensus 140 V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F~~v~~~kp~~sr~ 214 (229)
|++|++.. ..+........+..++++++.+++.. +....+++..+- =-+...++|...+.
T Consensus 90 vv~DPPFl-----------~~ec~~k~a~ti~~L~k~~~kii~~T--g~~~~~~~~~ll--~~~~~~f~p~h~~~ 149 (162)
T PF10237_consen 90 VVIDPPFL-----------SEECLTKTAETIRLLLKPGGKIILCT--GEEMEELIKKLL--GLRMCDFQPEHPNN 149 (162)
T ss_pred EEECCCCC-----------CHHHHHHHHHHHHHHhCccceEEEec--HHHHHHHHHHHh--CeeEEeEEeccccC
Confidence 99999751 11112233333444457778876532 222233332222 12344566766654
No 390
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=83.64 E-value=3.7 Score=35.22 Aligned_cols=93 Identities=23% Similarity=0.316 Sum_probs=50.6
Q ss_pred cCCCCeeEeecCCCCchHHH---HHHHHhccCCCCCCCCcEEEEEeCCCCC--C--CCCCeEEecCCCCChhHHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWSQV---AVKLVNSHGYDSKQPKGLVLSVDKLPIY--P--IDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~---la~~~~~~~~~~~~~~~~v~gvD~~~~~--~--~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
+.++.+||=.|+ |..+.. +++..+ ..+|++++.++.. . --++..+ .. ........+.+.
T Consensus 165 ~~~~~~vlI~g~--g~vg~~~~~~a~~~g---------~~~v~~~~~~~~~~~~~~~~g~~~~-~~--~~~~~~~~l~~~ 230 (344)
T cd08284 165 VRPGDTVAVIGC--GPVGLCAVLSAQVLG---------AARVFAVDPVPERLERAAALGAEPI-NF--EDAEPVERVREA 230 (344)
T ss_pred CccCCEEEEECC--cHHHHHHHHHHHHcC---------CceEEEEcCCHHHHHHHHHhCCeEE-ec--CCcCHHHHHHHH
Confidence 457889988865 455544 444432 1268888665410 0 0122222 12 122233345555
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
.+++.+|+|+..... ...+..+.+.|+++|+++.
T Consensus 231 ~~~~~~dvvid~~~~-----------------~~~~~~~~~~l~~~g~~v~ 264 (344)
T cd08284 231 TEGRGADVVLEAVGG-----------------AAALDLAFDLVRPGGVISS 264 (344)
T ss_pred hCCCCCCEEEECCCC-----------------HHHHHHHHHhcccCCEEEE
Confidence 556679999972210 1245567888999999875
No 391
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=83.34 E-value=11 Score=33.01 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=51.6
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCC-eEEecCCCCCh--hHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGA-VVLSKCDFTQP--DIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~-~~~~~~D~~~~--~~~~~i~~ 130 (229)
+.+|.+||=.|+|+ |..+..+++..+ ...|++++.++- ... -++ .++ +..+. +....+..
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G---------~~~v~~~~~~~~~~~~~~~~g~~~~v---~~~~~~~~~~~~l~~ 248 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAG---------ASRIIAVDINKDKFEKAKQLGATECI---NPRDQDKPIVEVLTE 248 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCeEEEEeCCHHHHHHHHHhCCCeec---ccccccchHHHHHHH
Confidence 56789999887655 444444555543 235788886541 000 122 222 22222 23333444
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHccc-CCCEEEEe
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSK-PGADCLIK 183 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lk-pgG~~v~~ 183 (229)
.. ++.+|+|+.-. |. ...+..+.+.|+ ++|+++..
T Consensus 249 ~~-~~~~d~vid~~-----g~------------~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 249 MT-DGGVDYAFEVI-----GS------------ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred Hh-CCCCcEEEECC-----CC------------HHHHHHHHHHhccCCCEEEEE
Confidence 44 46799999622 10 124556778898 99998853
No 392
>KOG0822|consensus
Probab=83.26 E-value=1.6 Score=40.30 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=58.3
Q ss_pred CeeEeecCCCCchHHHHHH---HHhccCCCCCCCCcEEEEEeCCCCC--CC---------CCCeEEecCCCCChhHHHHH
Q psy1489 63 LKVLDCGAAPGSWSQVAVK---LVNSHGYDSKQPKGLVLSVDKLPIY--PI---------DGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~---~~~~~~~~~~~~~~~v~gvD~~~~~--~~---------~~~~~~~~~D~~~~~~~~~i 128 (229)
..|+-+|+|.|-+.....+ ... ..-++++|+-+|-+ .+ ..++++ ..|.+.-.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~--------RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii-~~DMR~w~----- 434 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETD--------RKVKLYAVEKNPNAIVTLQNRNFECWDNRVTII-SSDMRKWN----- 434 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhc--------CceEEEEEecCcchhhhhhhhchhhhcCeeEEE-eccccccC-----
Confidence 4678889999977655433 222 34589999998821 11 246677 77766521
Q ss_pred HHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 129 VTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
-+.++.|+++|-.-- -.|..+ +.-+.|+-+.++|||.|..|=.
T Consensus 435 ---ap~eq~DI~VSELLG-SFGDNE--------LSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 435 ---APREQADIIVSELLG-SFGDNE--------LSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred ---CchhhccchHHHhhc-cccCcc--------CCHHHHHHHHhhcCCCceEccc
Confidence 113677888874321 112222 2336788899999999987643
No 393
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=83.26 E-value=7.7 Score=32.23 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=51.2
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+.+|.+||=.|+ |+ |..+..+++..+ ..|++++.++- . .-.++..+ -+..+......+....
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~ 201 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALG----------ATVIGTVSSEEKAELARAAGADHV--INYRDEDFVERVREIT 201 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcC----------CEEEEEcCCHHHHHHHHHCCCCEE--EeCCchhHHHHHHHHc
Confidence 557899999985 33 444455555543 57888876541 0 00122211 1112223333444444
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
.+..+|+|+.... + ..+..+.+.|+++|+++.
T Consensus 202 ~~~~~d~vl~~~~----~--------------~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 202 GGRGVDVVYDGVG----K--------------DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred CCCCeeEEEECCC----c--------------HhHHHHHHhhccCcEEEE
Confidence 5567999997221 0 123446778899999875
No 394
>PRK07576 short chain dehydrogenase; Provisional
Probab=83.21 E-value=24 Score=29.04 Aligned_cols=76 Identities=12% Similarity=0.068 Sum_probs=46.8
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------C-CCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------P-IDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------~-~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
++.++|-.| |+|+++..+++.+.. ...+|+.++.++- . . -..+.++ ..|+++......+.+
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFAR-------AGANVAVASRSQEKVDAAVAQLQQAGPEGLGV-SADVRDYAAVEAAFA 78 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHHhCCceEEE-ECCCCCHHHHHHHHH
Confidence 467888888 567777777766542 2358999987641 0 0 1235667 889998764433322
Q ss_pred Hh--CCCCccEEEeCCC
Q psy1489 131 IL--KDDKLDVVLSDMA 145 (229)
Q Consensus 131 ~~--~~~~~D~V~sd~~ 145 (229)
.. .-..+|+++.++.
T Consensus 79 ~~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 79 QIADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 21 1146899998764
No 395
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=83.19 E-value=7.8 Score=33.22 Aligned_cols=93 Identities=18% Similarity=0.130 Sum_probs=50.8
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+.++.+||=.|+|+ |..+..+++..+ .+|+.++.++- . .--++..+ -+..+.+....+.. +
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G----------~~vi~~~~~~~~~~~~~~~g~~~~--i~~~~~~~~~~~~~-~- 226 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMG----------FRTVAISRGSDKADLARKLGAHHY--IDTSKEDVAEALQE-L- 226 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCC----------CeEEEEeCChHHHHHHHHcCCcEE--ecCCCccHHHHHHh-c-
Confidence 46788999999655 444455555543 47888887641 0 00122211 12222222222332 2
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
..+|+|+..... ...+..+.+.|+++|+++.-
T Consensus 227 -~~~d~vi~~~g~-----------------~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 227 -GGAKLILATAPN-----------------AKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred -CCCCEEEECCCc-----------------hHHHHHHHHHcccCCEEEEE
Confidence 358999962210 12455678889999998853
No 396
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=83.18 E-value=15 Score=33.84 Aligned_cols=126 Identities=16% Similarity=0.186 Sum_probs=69.8
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC----CCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI----DGAVVLSKCDFTQPDIQDRLVTILKDD 135 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~----~~~~~~~~~D~~~~~~~~~i~~~~~~~ 135 (229)
-.|.+|+-+|+|+ .+..++++... -..+|+.+|.++.... .++.+. + +.+.+ .
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~a-------~Ga~ViV~e~dp~~a~~A~~~G~~~~------~------leell--~ 308 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALRG-------FGARVVVTEIDPICALQAAMEGYQVV------T------LEDVV--E 308 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHH-------CCCEEEEEeCCchhHHHHHhcCceec------c------HHHHH--h
Confidence 3689999999997 44444444321 2358999988762211 122211 1 12222 2
Q ss_pred CccEEEeCCCCCCCCCCcccHHHHHHHHHHHH-HHHHHcccCCCEEEEeecCCCChHHHHHHHHhhC-CeeEEEcCCCC-
Q psy1489 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVI-RFAVTYSKPGADCLIKIWDGRNRPQLEESITRFY-SQVKILKPPSS- 212 (229)
Q Consensus 136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l-~~~~~~LkpgG~~v~~~~~~~~~~~~~~~l~~~F-~~v~~~kp~~s- 212 (229)
..|+|+.-. |.. .++ ......+|||+.++-. -.+ +.+..+..|+..= ..+...+|...
T Consensus 309 ~ADIVI~at-----Gt~------------~iI~~e~~~~MKpGAiLINv-Gr~-d~Ei~i~aL~~~~~vdv~evep~v~~ 369 (476)
T PTZ00075 309 TADIFVTAT-----GNK------------DIITLEHMRRMKNNAIVGNI-GHF-DNEIQVAELEAYPGIEIVEIKPQVDR 369 (476)
T ss_pred cCCEEEECC-----Ccc------------cccCHHHHhccCCCcEEEEc-CCC-chHHhHHHHHhcCCceeecccCCCCe
Confidence 589999832 211 122 2467789999998752 222 2233334454422 23445556443
Q ss_pred --CCCCceEEEEeccCC
Q psy1489 213 --RSHSAELFLLGRGFK 227 (229)
Q Consensus 213 --r~~s~E~Y~v~~~~~ 227 (229)
-++-..+|+++.|..
T Consensus 370 ~~~~~g~~i~llaeGrl 386 (476)
T PTZ00075 370 YTFPDGKGIILLAEGRL 386 (476)
T ss_pred EEeCCCCEEEEEeCCCc
Confidence 245678999999875
No 397
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=83.16 E-value=31 Score=30.63 Aligned_cols=75 Identities=27% Similarity=0.268 Sum_probs=49.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----------CCCCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----------PIDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----------~~~~~~~~~~~D~~~~~~~~~i 128 (229)
.+.+||-.| |+|.++..+++.+.. ...+|++++.++- . ..++++++ .+|+++++....+
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~-------~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v-~~Dl~d~~~l~~~ 129 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVR-------RGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVV-FGDVTDADSLRKV 129 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHH-------CCCEEEEEEechhhccccchhhHHhhhcCCceEE-EeeCCCHHHHHHH
Confidence 467899888 689998888876642 2247888887541 1 12467888 9999997655443
Q ss_pred HHHhCCCCccEEEeCCC
Q psy1489 129 VTILKDDKLDVVLSDMA 145 (229)
Q Consensus 129 ~~~~~~~~~D~V~sd~~ 145 (229)
.... ...+|+|++...
T Consensus 130 ~~~~-~~~~D~Vi~~aa 145 (390)
T PLN02657 130 LFSE-GDPVDVVVSCLA 145 (390)
T ss_pred HHHh-CCCCcEEEECCc
Confidence 3211 116999997554
No 398
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.12 E-value=25 Score=29.02 Aligned_cols=77 Identities=25% Similarity=0.194 Sum_probs=46.1
Q ss_pred CCCeeEeecCCCC-chHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----C----CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPG-SWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----Y----PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG-~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~----~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.|+.+|--|++.| +++..+++.+.. ...+|+.++.++. . ......++ +.|+.+.+....+.+
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~-------~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~-~~Dv~~~~~v~~~~~ 78 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKK-------HGAELWFTYQSEVLEKRVKPLAEEIGCNFVS-ELDVTNPKSISNLFD 78 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHH-------cCCEEEEEeCchHHHHHHHHHHHhcCCceEE-EccCCCHHHHHHHHH
Confidence 3577888899875 677676665531 2247777765520 0 11223356 789999765544333
Q ss_pred HhC--CCCccEEEeCCC
Q psy1489 131 ILK--DDKLDVVLSDMA 145 (229)
Q Consensus 131 ~~~--~~~~D~V~sd~~ 145 (229)
.+. -+.+|+++.++.
T Consensus 79 ~~~~~~g~iDilVnnag 95 (260)
T PRK06603 79 DIKEKWGSFDFLLHGMA 95 (260)
T ss_pred HHHHHcCCccEEEEccc
Confidence 221 157999998775
No 399
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=83.01 E-value=9.8 Score=32.55 Aligned_cols=96 Identities=22% Similarity=0.234 Sum_probs=55.2
Q ss_pred cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+.++.+||=.|+++ |..+..+++..+ .+|+.+..++- ..+ -++..+ -+..+.+....+....
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~ 230 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAMG----------LRVIAIDVGDEKLELAKELGADAF--VDFKKSDDVEAVKELT 230 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCC----------CeEEEEeCCHHHHHHHHHcCCcEE--EcCCCccHHHHHHHHh
Confidence 56789999998865 455555666553 47888876641 000 122211 1222223333455445
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
++..+|+|+.+... ...+..+.+.|+++|+++..
T Consensus 231 ~~~~vd~vl~~~~~-----------------~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 231 GGGGAHAVVVTAVS-----------------AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred cCCCCCEEEEcCCc-----------------hHHHHHHHHHhhcCCEEEEe
Confidence 56679999963211 12345577889999999864
No 400
>PRK05693 short chain dehydrogenase; Provisional
Probab=82.91 E-value=25 Score=29.02 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=46.4
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCeEEecCCCCChhHHHHHHHHh--CCCCc
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAVVLSKCDFTQPDIQDRLVTIL--KDDKL 137 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~~~~~~D~~~~~~~~~i~~~~--~~~~~ 137 (229)
++|-.|+ +|+++..+++.+.. ...+|++++.++- .. -.++.++ ..|+.+.+....+.+.. ..+.+
T Consensus 3 ~vlItGa-sggiG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~~i 73 (274)
T PRK05693 3 VVLITGC-SSGIGRALADAFKA-------AGYEVWATARKAEDVEALAAAGFTAV-QLDVNDGAALARLAEELEAEHGGL 73 (274)
T ss_pred EEEEecC-CChHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHCCCeEE-EeeCCCHHHHHHHHHHHHHhcCCC
Confidence 5666675 67777777776642 2358999887651 11 1246677 89999876544333222 12468
Q ss_pred cEEEeCCCC
Q psy1489 138 DVVLSDMAP 146 (229)
Q Consensus 138 D~V~sd~~~ 146 (229)
|+|+.+...
T Consensus 74 d~vi~~ag~ 82 (274)
T PRK05693 74 DVLINNAGY 82 (274)
T ss_pred CEEEECCCC
Confidence 999998754
No 401
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=82.55 E-value=26 Score=28.85 Aligned_cols=78 Identities=19% Similarity=0.182 Sum_probs=48.5
Q ss_pred CCCeeEeecCC-CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--------C----CCCCCeEEecCCCCChhHHHH
Q psy1489 61 PGLKVLDCGAA-PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--------Y----PIDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 61 ~g~~VLDlGcG-pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--------~----~~~~~~~~~~~D~~~~~~~~~ 127 (229)
.++.+|-.|++ +++++..+++.+.. ...+|+.++.+.- . ....+.++ +.|+.+.+....
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~-------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~v~~ 76 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHA-------AGAELGITYLPDEKGRFEKKVRELTEPLNPSLFL-PCDVQDDAQIEE 76 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHH-------CCCEEEEEecCcccchHHHHHHHHHhccCcceEe-ecCcCCHHHHHH
Confidence 46789999995 68899888887752 2246655543210 0 11234567 899999765544
Q ss_pred HHHHhC--CCCccEEEeCCCC
Q psy1489 128 LVTILK--DDKLDVVLSDMAP 146 (229)
Q Consensus 128 i~~~~~--~~~~D~V~sd~~~ 146 (229)
+.+.+. -+.+|+++.+...
T Consensus 77 ~~~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 77 TFETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred HHHHHHHHcCCCCEEEEcccc
Confidence 333221 1479999988753
No 402
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=82.54 E-value=9.7 Score=32.82 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=51.0
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+.+|.+||=.|+|. |..+..+++..| ...++++|.++.. .-.++..+ -+.........+....+
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G---------~~~v~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~~~~ 240 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKN---------PKKLIVLDLKDERLALARKFGADVV--LNPPEVDVVEKIKELTG 240 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEEcCCHHHHHHHHHcCCcEE--ecCCCcCHHHHHHHHhC
Confidence 45788887755533 333444555543 2357888876511 00122211 12222233334544455
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+..+|+|+.-.. . ...+..+.+.|+++|+++.
T Consensus 241 ~~~vdvvld~~g-----~------------~~~~~~~~~~l~~~G~~v~ 272 (350)
T cd08256 241 GYGCDIYIEATG-----H------------PSAVEQGLNMIRKLGRFVE 272 (350)
T ss_pred CCCCCEEEECCC-----C------------hHHHHHHHHHhhcCCEEEE
Confidence 557999986221 0 0234557888999999875
No 403
>PRK06181 short chain dehydrogenase; Provisional
Probab=82.49 E-value=17 Score=29.68 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=45.4
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------C-CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------P-IDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------~-~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
.+||-.| |+|+++..+++.+.. ...+|++++.++- . . -..+.+. .+|+.+......+.+..
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~-------~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~-~~Dl~~~~~~~~~~~~~ 72 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLAR-------AGAQLVLAARNETRLASLAQELADHGGEALVV-PTDVSDAEACERLIEAA 72 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE-EccCCCHHHHHHHHHHH
Confidence 4577666 556777777766532 2358999988741 0 0 1246677 89999876443332221
Q ss_pred C--CCCccEEEeCCCC
Q psy1489 133 K--DDKLDVVLSDMAP 146 (229)
Q Consensus 133 ~--~~~~D~V~sd~~~ 146 (229)
. -...|.|+.....
T Consensus 73 ~~~~~~id~vi~~ag~ 88 (263)
T PRK06181 73 VARFGGIDILVNNAGI 88 (263)
T ss_pred HHHcCCCCEEEECCCc
Confidence 1 1368999987653
No 404
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.29 E-value=10 Score=32.50 Aligned_cols=97 Identities=19% Similarity=0.224 Sum_probs=53.7
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+.+|.+||=.|||+ |..+..+++..+ ...+++++.++.. .--++..+ -|..+......+....+
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G---------~~~v~~~~~~~~~~~~~~~~ga~~v--~~~~~~~~~~~i~~~~~ 234 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLG---------AERIIAMSRHEDRQALAREFGATDI--VAERGEEAVARVRELTG 234 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHcCCceE--ecCCcccHHHHHHHhcC
Confidence 45688888777654 444455555543 2358888876410 00122221 12222233334554455
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+..+|+++.-. |. ...+..+.+.|+++|+++..
T Consensus 235 ~~~~d~il~~~-----g~------------~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 235 GVGADAVLECV-----GT------------QESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred CCCCCEEEECC-----CC------------HHHHHHHHHhhccCCEEEEe
Confidence 56799999622 10 12456688889999998753
No 405
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.25 E-value=9.1 Score=32.03 Aligned_cols=91 Identities=22% Similarity=0.249 Sum_probs=51.3
Q ss_pred cCCCCeeEeecCC-C-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAA-P-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcG-p-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+++|++||=.|++ + |..+..+++..+ .+|+++..++- ..-.++..+ ..+ .......+...
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~~-~~~--~~~~~~~i~~~- 205 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALG----------ATVTATTRSPERAALLKELGADEV-VID--DGAIAEQLRAA- 205 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHhcCCcEE-Eec--CccHHHHHHHh-
Confidence 5678999988872 2 455555666543 57888876651 000122222 112 11223334443
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+..+|+|+.... ...+..+.+.|+++|+++.
T Consensus 206 -~~~~d~vl~~~~------------------~~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 206 -PGGFDKVLELVG------------------TATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred -CCCceEEEECCC------------------hHHHHHHHHHhccCCEEEE
Confidence 567999996321 0234557788999999875
No 406
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=82.23 E-value=3.7 Score=36.06 Aligned_cols=105 Identities=23% Similarity=0.308 Sum_probs=53.9
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+.+|++||-.|+|+ |..+..+++..+ ..+|+++|.++.. .--++..+ |..+......+....+
T Consensus 174 ~~~g~~vlI~g~g~vg~~~~~~a~~~G---------~~~vi~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~i~~~~~ 241 (375)
T cd08282 174 VQPGDTVAVFGAGPVGLMAAYSAILRG---------ASRVYVVDHVPERLDLAESIGAIPI---DFSDGDPVEQILGLEP 241 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC---------CCEEEEECCCHHHHHHHHHcCCeEe---ccCcccHHHHHHHhhC
Confidence 45788888877754 444444555432 2378888876510 00122222 3333333333444333
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
..+|+|+.-...... .++.+ ......+..+.+.|+++|++++
T Consensus 242 -~~~d~v~d~~g~~~~-~~~~~-----~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 242 -GGVDRAVDCVGYEAR-DRGGE-----AQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred -CCCCEEEECCCCccc-ccccc-----cchHHHHHHHHHHhhcCcEEEE
Confidence 569999873321100 00000 0012346678889999999864
No 407
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=82.16 E-value=8.1 Score=33.05 Aligned_cols=95 Identities=22% Similarity=0.271 Sum_probs=51.3
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcE-EEEEeCCCC--CCC--CCC-eEEecCCCCChhHHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPI--YPI--DGA-VVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~~--~~~--~~~-~~~~~~D~~~~~~~~~i~~~ 131 (229)
+++|.+||=.|+|. |..+..+++..+ .+ |++++.++- ... -++ .++ +..+......+...
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g----------~~~v~~~~~s~~~~~~~~~~g~~~~~---~~~~~~~~~~i~~~ 229 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASG----------ARKVIVSDLNEFRLEFAKKLGADYTI---DAAEEDLVEKVREL 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----------CcEEEEECCCHHHHHHHHHhCCcEEe---cCCccCHHHHHHHH
Confidence 56889999887542 333344444432 34 777766541 000 111 222 22233333445555
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
..+..+|+|+..... ...+..+.+.|+++|+++..
T Consensus 230 ~~~~~vd~vld~~~~-----------------~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 230 TDGRGADVVIVATGS-----------------PEAQAQALELVRKGGRILFF 264 (343)
T ss_pred hCCcCCCEEEECCCC-----------------hHHHHHHHHHhhcCCEEEEE
Confidence 556679999973210 12345567789999998863
No 408
>PRK08267 short chain dehydrogenase; Provisional
Probab=82.08 E-value=25 Score=28.73 Aligned_cols=74 Identities=18% Similarity=0.127 Sum_probs=46.2
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC--CCCeEEecCCCCChhHHHHHHH-HhC-
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI--DGAVVLSKCDFTQPDIQDRLVT-ILK- 133 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~--~~~~~~~~~D~~~~~~~~~i~~-~~~- 133 (229)
++|-.|++ |+++..+++.+.. ...+|+.++.++- . .+ ..+.++ ++|+.+.+....+.. ...
T Consensus 3 ~vlItGas-g~iG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAA-------EGWRVGAYDINEAGLAALAAELGAGNAWTG-ALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHH-------CCCeEEEEeCCHHHHHHHHHHhcCCceEEE-EecCCCHHHHHHHHHHHHHH
Confidence 57777755 6777777776542 2248888887651 1 11 247788 999998764443322 211
Q ss_pred -CCCccEEEeCCCC
Q psy1489 134 -DDKLDVVLSDMAP 146 (229)
Q Consensus 134 -~~~~D~V~sd~~~ 146 (229)
.+++|+|+.++..
T Consensus 74 ~~~~id~vi~~ag~ 87 (260)
T PRK08267 74 TGGRLDVLFNNAGI 87 (260)
T ss_pred cCCCCCEEEECCCC
Confidence 3578999987753
No 409
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=82.01 E-value=14 Score=32.43 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=58.1
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCC-eEEecCCCCCh-hHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGA-VVLSKCDFTQP-DIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~-~~~~~~D~~~~-~~~~~i~~~~ 132 (229)
.++|++|.-+|||-=+++.....+.. ...+++|||+++- ..-.++ +++ |-.+. +..+.+.+..
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~a--------gA~~IiAvD~~~~Kl~~A~~fGAT~~v---n~~~~~~vv~~i~~~T 251 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAA--------GAGRIIAVDINPEKLELAKKFGATHFV---NPKEVDDVVEAIVELT 251 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHc--------CCceEEEEeCCHHHHHHHHhcCCceee---cchhhhhHHHHHHHhc
Confidence 46789999999988555544444443 5679999999971 111222 233 11122 3444455433
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
+...|.++-- .|. ..+++.+...+.++|..++.-..
T Consensus 252 -~gG~d~~~e~-----~G~------------~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 252 -DGGADYAFEC-----VGN------------VEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred -CCCCCEEEEc-----cCC------------HHHHHHHHHHHhcCCeEEEEecC
Confidence 4467887641 121 13556677778789988875443
No 410
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=81.76 E-value=9.4 Score=31.79 Aligned_cols=94 Identities=23% Similarity=0.298 Sum_probs=50.4
Q ss_pred cCCCCeeEeecCCCCchH---HHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAPGSWS---QVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s---~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
+.++.+||-.|| +|.+. ..+++..+ ..|+.++.++- ..+ .++... -+..+.+....+...
T Consensus 137 ~~~~~~vli~g~-~~~~g~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~i~~~ 203 (323)
T cd08241 137 LQPGETVLVLGA-AGGVGLAAVQLAKALG----------ARVIAAASSEEKLALARALGADHV--IDYRDPDLRERVKAL 203 (323)
T ss_pred CCCCCEEEEEcC-CchHHHHHHHHHHHhC----------CEEEEEeCCHHHHHHHHHcCCcee--eecCCccHHHHHHHH
Confidence 567899999998 34443 44444433 47888877641 000 122111 111122233344444
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
..+..+|+++..... ..+..+.+.++++|+++..
T Consensus 204 ~~~~~~d~v~~~~g~------------------~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 204 TGGRGVDVVYDPVGG------------------DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred cCCCCcEEEEECccH------------------HHHHHHHHhhccCCEEEEE
Confidence 455679999873210 1234466778899988753
No 411
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=81.76 E-value=8.9 Score=31.26 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=46.0
Q ss_pred cEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHH--HHHHHHHHHHHHH
Q psy1489 95 GLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLI--TQLAIAVIRFAVT 172 (229)
Q Consensus 95 ~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~--~~~~~~~l~~~~~ 172 (229)
.+|+.+|.++. ......++ +.|+.+.+....+.+.+. +.+|+++.++... .....+.... ..-....++.+..
T Consensus 10 ~~Vv~~~r~~~-~~~~~~~~-~~Dl~~~~~v~~~~~~~~-~~iD~li~nAG~~--~~~~~~~~~~vN~~~~~~l~~~~~~ 84 (241)
T PRK12428 10 ARVIGVDRREP-GMTLDGFI-QADLGDPASIDAAVAALP-GRIDALFNIAGVP--GTAPVELVARVNFLGLRHLTEALLP 84 (241)
T ss_pred CEEEEEeCCcc-hhhhhHhh-cccCCCHHHHHHHHHHhc-CCCeEEEECCCCC--CCCCHHHhhhhchHHHHHHHHHHHH
Confidence 58888888752 12223456 899998765544443332 5799999987532 1111111111 1111234455566
Q ss_pred cccCCCEEEE
Q psy1489 173 YSKPGADCLI 182 (229)
Q Consensus 173 ~LkpgG~~v~ 182 (229)
.++++|+++.
T Consensus 85 ~~~~~g~Iv~ 94 (241)
T PRK12428 85 RMAPGGAIVN 94 (241)
T ss_pred hccCCcEEEE
Confidence 6677788775
No 412
>PRK08324 short chain dehydrogenase; Validated
Probab=81.72 E-value=21 Score=34.30 Aligned_cols=76 Identities=21% Similarity=0.226 Sum_probs=47.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC---CCCeEEecCCCCChhHHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI---DGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~---~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
+|+.||-.|+ +|+++..+++.+.. ...+|+.+|.++- . .+ .++.++ ..|+++.+....+.+.
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~-------~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v-~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAA-------EGACVVLADLDEEAAEAAAAELGGPDRALGV-ACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHH-------CcCEEEEEeCCHHHHHHHHHHHhccCcEEEE-EecCCCHHHHHHHHHH
Confidence 4678888876 45666666665532 2258999998751 0 01 256677 8999987644433221
Q ss_pred h--CCCCccEEEeCCC
Q psy1489 132 L--KDDKLDVVLSDMA 145 (229)
Q Consensus 132 ~--~~~~~D~V~sd~~ 145 (229)
. .-+.+|+|+.+..
T Consensus 492 ~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 492 AALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1 1246999998775
No 413
>PRK07985 oxidoreductase; Provisional
Probab=81.70 E-value=31 Score=29.13 Aligned_cols=76 Identities=17% Similarity=0.014 Sum_probs=45.1
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-CC-----------CCCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-YP-----------IDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~~-----------~~~~~~~~~~D~~~~~~~~~i 128 (229)
.++++|-.|+ +|+++..+++.+.. ...+|+.++.+.- .. -..+.++ ..|+.+.+....+
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~-------~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~ 118 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYAR-------EGADVAISYLPVEEEDAQDVKKIIEECGRKAVLL-PGDLSDEKFARSL 118 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHH-------CCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEE-EccCCCHHHHHHH
Confidence 4578998885 57777777776642 2347777765421 10 0135567 8999987644333
Q ss_pred HHHh--CCCCccEEEeCCC
Q psy1489 129 VTIL--KDDKLDVVLSDMA 145 (229)
Q Consensus 129 ~~~~--~~~~~D~V~sd~~ 145 (229)
.+.. .-+..|+++.++.
T Consensus 119 ~~~~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 119 VHEAHKALGGLDIMALVAG 137 (294)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 2211 1246899998764
No 414
>PRK07814 short chain dehydrogenase; Provisional
Probab=81.48 E-value=21 Score=29.41 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=48.4
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--------CCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--------IDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--------~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
++.++|-.|+ +|+.+..+++.+.. ...+|+.++.++- .. -..+.++ ..|+++......+.+
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~-------~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~~ 79 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAE-------AGADVLIAARTESQLDEVAEQIRAAGRRAHVV-AADLAHPEATAGLAG 79 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE-EccCCCHHHHHHHHH
Confidence 4678888884 67788877776642 2358888887651 10 1246677 899999765433322
Q ss_pred Hh-C-CCCccEEEeCCC
Q psy1489 131 IL-K-DDKLDVVLSDMA 145 (229)
Q Consensus 131 ~~-~-~~~~D~V~sd~~ 145 (229)
.. . -+.+|+|+..+.
T Consensus 80 ~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 80 QAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 11 1 146899998764
No 415
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=81.39 E-value=15 Score=31.34 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=51.4
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCC-eEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGA-VVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~-~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+.++.+||=+|+|+ |..+..+++..+ ..+|++++.++- ..+ -++ .++ +..+. ....+....
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g---------~~~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~-~~~~i~~~~ 231 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALT---------PATVIAVDRSEEALKLAERLGADHVL---NASDD-VVEEVRELT 231 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhC---------CCcEEEEeCCHHHHHHHHHhCCcEEE---cCCcc-HHHHHHHHh
Confidence 45789999998654 333333444432 247888876641 000 122 122 11222 333344445
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.+..+|+|+... |. ...+..+.+.|+++|+++..
T Consensus 232 ~~~~~dvvld~~-----g~------------~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 232 GGRGADAVIDFV-----GS------------DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CCCCCCEEEEcC-----CC------------HHHHHHHHHHhhcCCEEEEE
Confidence 556799999722 10 12345577889999998853
No 416
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=81.24 E-value=14 Score=31.23 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=51.8
Q ss_pred cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-----CCCCCCCeEEecCCCCChhHHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-----IYPIDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-----~~~~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
+.+|.+||=.|+.. |..+..+++..| ..++.+.-+. +... ++..+ -+..+......+...
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G----------~~v~~~~~~~~~~~~~~~~-g~~~~--~~~~~~~~~~~i~~~ 203 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAAARG----------INVINLVRRDAGVAELRAL-GIGPV--VSTEQPGWQDKVREA 203 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCC----------CeEEEEecCHHHHHHHHhc-CCCEE--EcCCCchHHHHHHHH
Confidence 56789999887632 555555666553 4555554332 1111 33222 122333334445555
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
..+..+|+|+... |. ..+..+.+.|+++|+++..
T Consensus 204 ~~~~~~d~v~d~~-----g~-------------~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 204 AGGAPISVALDSV-----GG-------------KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred hCCCCCcEEEECC-----CC-------------hhHHHHHHhhcCCcEEEEE
Confidence 5566799999632 11 1234567889999998853
No 417
>PRK08264 short chain dehydrogenase; Validated
Probab=81.21 E-value=26 Score=28.05 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=49.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCc-EEEEEeCCCCCC---CCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKG-LVLSVDKLPIYP---IDGAVVLSKCDFTQPDIQDRLVTILKDDK 136 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~-~v~gvD~~~~~~---~~~~~~~~~~D~~~~~~~~~i~~~~~~~~ 136 (229)
.+.+||=.|+ +|+.+..+++.+.. ... +|+.++.++... -.++.++ .+|+.+.+....+.+.+ ..
T Consensus 5 ~~~~vlItGg-sg~iG~~la~~l~~-------~G~~~V~~~~r~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~--~~ 73 (238)
T PRK08264 5 KGKVVLVTGA-NRGIGRAFVEQLLA-------RGAAKVYAAARDPESVTDLGPRVVPL-QLDVTDPASVAAAAEAA--SD 73 (238)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-------CCcccEEEEecChhhhhhcCCceEEE-EecCCCHHHHHHHHHhc--CC
Confidence 3568888884 77788777776642 223 788888765211 1357788 89999876554444332 35
Q ss_pred ccEEEeCCCC
Q psy1489 137 LDVVLSDMAP 146 (229)
Q Consensus 137 ~D~V~sd~~~ 146 (229)
+|+|+.....
T Consensus 74 id~vi~~ag~ 83 (238)
T PRK08264 74 VTILVNNAGI 83 (238)
T ss_pred CCEEEECCCc
Confidence 8999987754
No 418
>PRK06128 oxidoreductase; Provisional
Probab=80.99 E-value=33 Score=28.96 Aligned_cols=113 Identities=15% Similarity=0.071 Sum_probs=60.0
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-CC-----------CCCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-YP-----------IDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~~-----------~~~~~~~~~~D~~~~~~~~~i 128 (229)
.+++||-.|+ +|+++..+++.+.. ...+|+.++.+.- .. -..+.++ .+|+.+......+
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~-------~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~v~~~ 124 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFAR-------EGADIALNYLPEEEQDAAEVVQLIQAEGRKAVAL-PGDLKDEAFCRQL 124 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHH-------cCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEE-ecCCCCHHHHHHH
Confidence 3578888884 67777777776642 2246666554321 00 1135567 8999997654433
Q ss_pred HHHhC--CCCccEEEeCCCCCC--CCCCccc--HHH-HHH----HHHHHHHHHHHcccCCCEEEE
Q psy1489 129 VTILK--DDKLDVVLSDMAPNA--TGMREMD--HDL-ITQ----LAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 129 ~~~~~--~~~~D~V~sd~~~~~--~g~~~~d--~~~-~~~----~~~~~l~~~~~~LkpgG~~v~ 182 (229)
.+... -+..|+++.+..... ....+.+ .+. .+. -....++.+...++++|.++.
T Consensus 125 ~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~ 189 (300)
T PRK06128 125 VERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN 189 (300)
T ss_pred HHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEE
Confidence 22111 136899999875321 1111111 111 111 111345556667778888765
No 419
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.88 E-value=11 Score=32.64 Aligned_cols=63 Identities=14% Similarity=0.025 Sum_probs=40.3
Q ss_pred eEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------CCCCCCeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489 65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138 (229)
Q Consensus 65 VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D 138 (229)
|+||-||-|+++.-+.+. | --.+.++|+++. ...++ ..+ .+|+.+.... .++ .+|
T Consensus 1 vidLF~G~GG~~~Gl~~a-G---------~~~~~a~e~~~~a~~ty~~N~~~-~~~-~~Di~~~~~~-----~~~--~~d 61 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G---------FKCVFASEIDKYAQKTYEANFGN-KVP-FGDITKISPS-----DIP--DFD 61 (315)
T ss_pred CEEEecCccHHHHHHHHc-C---------CeEEEEEeCCHHHHHHHHHhCCC-CCC-ccChhhhhhh-----hCC--CcC
Confidence 689999999999887542 2 235678999861 12233 344 6777764311 122 589
Q ss_pred EEEeCCCC
Q psy1489 139 VVLSDMAP 146 (229)
Q Consensus 139 ~V~sd~~~ 146 (229)
+++...++
T Consensus 62 vl~gg~PC 69 (315)
T TIGR00675 62 ILLGGFPC 69 (315)
T ss_pred EEEecCCC
Confidence 99987654
No 420
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=80.68 E-value=7.6 Score=32.96 Aligned_cols=90 Identities=21% Similarity=0.336 Sum_probs=49.8
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCC-eEEecCCCCChhHHHHHHHHhCCC
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGA-VVLSKCDFTQPDIQDRLVTILKDD 135 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~-~~~~~~D~~~~~~~~~i~~~~~~~ 135 (229)
+++|.+||=+|+ |+ |..+..+++..| .+|++++......--++ .++ .. .+ ....+.... +
T Consensus 160 ~~~g~~vlI~g~~g~vg~~~~~~a~~~G----------~~v~~~~~~~~~~~~g~~~~~-~~--~~--~~~~l~~~~--~ 222 (325)
T cd08264 160 LGPGETVVVFGASGNTGIFAVQLAKMMG----------AEVIAVSRKDWLKEFGADEVV-DY--DE--VEEKVKEIT--K 222 (325)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcC----------CeEEEEeHHHHHHHhCCCeee-cc--hH--HHHHHHHHh--C
Confidence 567899999987 44 555555565543 46777764321110112 122 11 11 122233333 5
Q ss_pred CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.+|+|+... | . ..+..+.+.|+++|+++..
T Consensus 223 ~~d~vl~~~-----g-----~--------~~~~~~~~~l~~~g~~v~~ 252 (325)
T cd08264 223 MADVVINSL-----G-----S--------SFWDLSLSVLGRGGRLVTF 252 (325)
T ss_pred CCCEEEECC-----C-----H--------HHHHHHHHhhccCCEEEEE
Confidence 699999722 1 0 2355688899999999853
No 421
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=80.65 E-value=32 Score=29.47 Aligned_cols=74 Identities=19% Similarity=0.083 Sum_probs=46.5
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCC-----------CCCeEEecCCCCChhHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPI-----------DGAVVLSKCDFTQPDIQ 125 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~-----------~~~~~~~~~D~~~~~~~ 125 (229)
++++||-.|+ +|.++.++++.+.. ...+|++++..+. ..+ ..+.++ .+|+++....
T Consensus 5 ~~~~vlVTGa-tGfiG~~l~~~L~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~ 75 (340)
T PLN02653 5 PRKVALITGI-TGQDGSYLTEFLLS-------KGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLH-YGDLSDASSL 75 (340)
T ss_pred CCCEEEEECC-CCccHHHHHHHHHH-------CCCEEEEEecccccccccchhhhccccccccCceEEE-EecCCCHHHH
Confidence 3567887774 77888888877642 2347888876431 011 236677 8999986544
Q ss_pred HHHHHHhCCCCccEEEeCCCC
Q psy1489 126 DRLVTILKDDKLDVVLSDMAP 146 (229)
Q Consensus 126 ~~i~~~~~~~~~D~V~sd~~~ 146 (229)
..+ +....+|+|+..+..
T Consensus 76 ~~~---~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 76 RRW---LDDIKPDEVYNLAAQ 93 (340)
T ss_pred HHH---HHHcCCCEEEECCcc
Confidence 333 223358999987653
No 422
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.44 E-value=9.7 Score=32.37 Aligned_cols=93 Identities=23% Similarity=0.258 Sum_probs=49.1
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcE-EEEEeCCCCC----CCCCC-eEEecCCCCChhHHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPIY----PIDGA-VVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~~~----~~~~~-~~~~~~D~~~~~~~~~i~~~ 131 (229)
+.+|.+||.+|+|. |..+..+++..+ .+ |+.++.++-. .-.++ .++ .. .+...... ..
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G----------~~~v~~~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~--~~ 221 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNG----------ASRVTVAEPNEEKLELAKKLGATETV-DP--SREDPEAQ--KE 221 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----------CcEEEEECCCHHHHHHHHHhCCeEEe-cC--CCCCHHHH--HH
Confidence 46789999997532 333344444432 34 7777766410 00122 222 22 22211111 22
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
..+..+|+|+..... ...+..+.+.|+++|+++..
T Consensus 222 ~~~~~vd~v~~~~~~-----------------~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 222 DNPYGFDVVIEATGV-----------------PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred hcCCCCcEEEECCCC-----------------hHHHHHHHHHHhcCCEEEEE
Confidence 445679999973210 12455577889999998753
No 423
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=80.38 E-value=24 Score=28.89 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=47.7
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-------C-CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-------P-IDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-------~-~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
.++++|-.|++ |+++..+++++.. ...+|+.++.++.. . -..+.++ ..|+++.+....+.+..
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~-------~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12481 7 NGKVAIITGCN-TGLGQGMAIGLAK-------AGADIVGVGVAEAPETQAQVEALGRKFHFI-TADLIQQKDIDSIVSQA 77 (251)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-------CCCEEEEecCchHHHHHHHHHHcCCeEEEE-EeCCCCHHHHHHHHHHH
Confidence 46789988864 5677777766542 23578877765311 0 1235677 89999976554433321
Q ss_pred C--CCCccEEEeCCCC
Q psy1489 133 K--DDKLDVVLSDMAP 146 (229)
Q Consensus 133 ~--~~~~D~V~sd~~~ 146 (229)
. -+..|+++.++..
T Consensus 78 ~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 78 VEVMGHIDILINNAGI 93 (251)
T ss_pred HHHcCCCCEEEECCCc
Confidence 1 2468999987753
No 424
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=80.22 E-value=12 Score=31.89 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=49.8
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCe-EEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAV-VLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~-~~~~~D~~~~~~~~~i~~~~ 132 (229)
+++|.+||=.|+|+ |..+..+++.. ...+|++++.++- ..+ -++. ++ ... ........+....
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~---------~g~~v~~~~~~~~~~~~~~~~g~~~v~-~~~-~~~~~~~~v~~~~ 228 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNV---------FNAKVIAVDINDDKLALAKEVGADLTI-NSK-RVEDVAKIIQEKT 228 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHh---------CCCeEEEEeCChHHHHHHHHcCCcEEe-ccc-ccccHHHHHHHhc
Confidence 56789999999654 44555555543 1257888877651 000 1222 22 111 1112222333333
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
. .+|.++-+... ...+..+.+.|+++|+++.-
T Consensus 229 ~--~~d~vi~~~~~-----------------~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 229 G--GAHAAVVTAVA-----------------KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred C--CCcEEEEeCCC-----------------HHHHHHHHHhccCCCEEEEE
Confidence 2 47854432210 12456688889999998853
No 425
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=79.93 E-value=12 Score=31.99 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=50.9
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCCC--CCC-eEEecCCCCC-hhHHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYPI--DGA-VVLSKCDFTQ-PDIQDRLVTI 131 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~~--~~~-~~~~~~D~~~-~~~~~~i~~~ 131 (229)
+.++.+||=.|+|. |..+..+++..+ .+|++++.++ ...+ .++ .++ +..+ .+....+...
T Consensus 163 ~~~~~~vlV~g~g~vg~~~~~~a~~~G----------~~vi~~~~~~~~~~~~~~~g~~~~i---~~~~~~~~~~~~~~~ 229 (345)
T cd08260 163 VKPGEWVAVHGCGGVGLSAVMIASALG----------ARVIAVDIDDDKLELARELGAVATV---NASEVEDVAAAVRDL 229 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----------CeEEEEeCCHHHHHHHHHhCCCEEE---ccccchhHHHHHHHH
Confidence 45788999998643 333344444432 5788887664 1111 122 222 2222 2333334444
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
..+ .+|+|+.-.. . ...+..+.+.|+++|+++.
T Consensus 230 ~~~-~~d~vi~~~g-----~------------~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 230 TGG-GAHVSVDALG-----I------------PETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred hCC-CCCEEEEcCC-----C------------HHHHHHHHHHhhcCCEEEE
Confidence 444 7999997321 0 1234557888999999875
No 426
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=79.52 E-value=5.1 Score=29.87 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=45.9
Q ss_pred CCeeEeecCCCCc-hHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCCCCCeEEecCCCCChhHHHHHHHHhCCCCccEE
Q psy1489 62 GLKVLDCGAAPGS-WSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVV 140 (229)
Q Consensus 62 g~~VLDlGcGpG~-~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V 140 (229)
..+|+++|-|-=. .+..|.+. | ..|+++|+.+.....++.++ ..|+++++.. .. ...|+|
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G----------~dV~~tDi~~~~a~~g~~~v-~DDif~P~l~-----iY--~~a~lI 74 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-G----------FDVIATDINPRKAPEGVNFV-VDDIFNPNLE-----IY--EGADLI 74 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S-----------EEEEE-SS-S----STTEE----SSS--HH-----HH--TTEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHc-C----------CcEEEEECcccccccCccee-eecccCCCHH-----Hh--cCCcEE
Confidence 3599999987643 33333333 2 58999999985334789999 9999997631 22 368999
Q ss_pred EeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489 141 LSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRN 189 (229)
Q Consensus 141 ~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~~ 189 (229)
.|--+| .+ +...+++.|.+ -|..++++.+.+..
T Consensus 75 YSiRPP-----~E--------l~~~il~lA~~---v~adlii~pL~~e~ 107 (127)
T PF03686_consen 75 YSIRPP-----PE--------LQPPILELAKK---VGADLIIRPLGGES 107 (127)
T ss_dssp EEES-------TT--------SHHHHHHHHHH---HT-EEEEE-BTTB-
T ss_pred EEeCCC-----hH--------HhHHHHHHHHH---hCCCEEEECCCCCC
Confidence 995544 11 12233333322 36778887776543
No 427
>PRK11524 putative methyltransferase; Provisional
Probab=79.20 E-value=1.8 Score=36.76 Aligned_cols=34 Identities=24% Similarity=0.146 Sum_probs=27.6
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
.+|+.|||--||+|.-+.+ |.+++ -+.+|+|+++
T Consensus 207 ~~GD~VLDPF~GSGTT~~A-A~~lg----------R~~IG~Ei~~ 240 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAV-AKASG----------RKFIGIEINS 240 (284)
T ss_pred CCCCEEEECCCCCcHHHHH-HHHcC----------CCEEEEeCCH
Confidence 5799999999999987666 44443 4899999987
No 428
>PRK12744 short chain dehydrogenase; Provisional
Probab=79.08 E-value=33 Score=27.94 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=45.6
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---CC-----------CCCCeEEecCCCCChhHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---YP-----------IDGAVVLSKCDFTQPDIQD 126 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---~~-----------~~~~~~~~~~D~~~~~~~~ 126 (229)
.+.+||=.|+ +|+++..+++.+.. ...+|+.++.+.. .. -..+.++ +.|+++.+...
T Consensus 7 ~~k~vlItGa-~~gIG~~~a~~l~~-------~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~ 77 (257)
T PRK12744 7 KGKVVLIAGG-AKNLGGLIARDLAA-------QGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAF-QADLTTAAAVE 77 (257)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHH-------CCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEE-ecCcCCHHHHH
Confidence 3568888885 66677777876642 2246566654321 00 0146677 89999876544
Q ss_pred HHHHHhC--CCCccEEEeCCCC
Q psy1489 127 RLVTILK--DDKLDVVLSDMAP 146 (229)
Q Consensus 127 ~i~~~~~--~~~~D~V~sd~~~ 146 (229)
.+..... -+..|+++.++..
T Consensus 78 ~~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 78 KLFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred HHHHHHHHhhCCCCEEEECCcc
Confidence 3322211 1468999988753
No 429
>KOG2793|consensus
Probab=78.87 E-value=10 Score=31.71 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=22.2
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
..+||+||+|+|--+..++...+ ..|.--|+-.
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~----------~~v~ltD~~~ 119 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLG----------AEVVLTDLPK 119 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhc----------ceeccCCchh
Confidence 45799999999965555555443 4666666543
No 430
>KOG1501|consensus
Probab=78.85 E-value=1.9 Score=38.95 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=24.3
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCC
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL 103 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~ 103 (229)
-|||+|+|||-++..+++.. +-.|+|++.-
T Consensus 69 ~vLdigtGTGLLSmMAvrag----------aD~vtA~Evf 98 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG----------ADSVTACEVF 98 (636)
T ss_pred EEEEccCCccHHHHHHHHhc----------CCeEEeehhh
Confidence 48999999999998877653 3579999875
No 431
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=78.84 E-value=14 Score=30.95 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=50.5
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcE-EEEEeCCC--CC--CCCCCe-EEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLP--IY--PIDGAV-VLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~--~~--~~~~~~-~~~~~D~~~~~~~~~i~~~~ 132 (229)
++++.+||=.|+ |..+..+++.... ...+ |+++...+ .. .-.++. ++ .. ........+....
T Consensus 127 ~~~~~~vlI~g~--g~vg~~~~~la~~-------~g~~~v~~~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~l~~~~ 194 (312)
T cd08269 127 IRAGKTVAVIGA--GFIGLLFLQLAAA-------AGARRVIAIDRRPARLALARELGATEVV-TD--DSEAIVERVRELT 194 (312)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHH-------cCCcEEEEECCCHHHHHHHHHhCCceEe-cC--CCcCHHHHHHHHc
Confidence 467889988874 4555554433221 1235 77776543 00 001222 22 11 1222333344445
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.+..+|+++..... ...+..+.+.|+++|+++..
T Consensus 195 ~~~~vd~vld~~g~-----------------~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 195 GGAGADVVIEAVGH-----------------QWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred CCCCCCEEEECCCC-----------------HHHHHHHHHHhccCCEEEEE
Confidence 55679999973211 12345577889999998853
No 432
>PRK10083 putative oxidoreductase; Provisional
Probab=78.79 E-value=14 Score=31.51 Aligned_cols=96 Identities=21% Similarity=0.164 Sum_probs=48.3
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+++|++||=.|+|+ |..+..+++... +...++++|.++. . .--+++.+ -|..+......+.. .
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~--------G~~~v~~~~~~~~~~~~~~~~Ga~~~--i~~~~~~~~~~~~~--~ 225 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVY--------NVKAVIVADRIDERLALAKESGADWV--INNAQEPLGEALEE--K 225 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhC--------CCCEEEEEcCCHHHHHHHHHhCCcEE--ecCccccHHHHHhc--C
Confidence 56789999999654 333344444321 2236888887651 0 00122211 12222222222221 1
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
+..+|+|+.-. |. ...+..+.+.|+++|+++.-
T Consensus 226 g~~~d~vid~~-----g~------------~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 226 GIKPTLIIDAA-----CH------------PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCCCCEEEECC-----CC------------HHHHHHHHHHhhcCCEEEEE
Confidence 22356777622 10 12456678889999999863
No 433
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=78.59 E-value=6.4 Score=33.75 Aligned_cols=92 Identities=23% Similarity=0.237 Sum_probs=49.5
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-C--CCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-I--DGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-~--~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+.+|.+||-+|+ |+ |..+..+++..+ .++++++.+.... + .++..+ . +..+..... .....
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g----------~~vi~~~~~~~~~~~~~~g~~~~-~-~~~~~~~~~--~~~~~ 240 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRG----------AIVIAVAGAAKEEAVRALGADTV-I-LRDAPLLAD--AKALG 240 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcC----------CEEEEEeCchhhHHHHhcCCeEE-E-eCCCccHHH--HHhhC
Confidence 567899999998 33 444455555543 5677777543100 0 122222 1 111111111 22234
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
+..+|+|+... + . ..+..+.+.|+++|+++.
T Consensus 241 ~~~~d~vi~~~-----g-----~--------~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 241 GEPVDVVADVV-----G-----G--------PLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred CCCCcEEEecC-----C-----H--------HHHHHHHHHhccCCEEEE
Confidence 56799999622 1 0 134557788999999874
No 434
>PRK06940 short chain dehydrogenase; Provisional
Probab=78.06 E-value=25 Score=29.28 Aligned_cols=72 Identities=15% Similarity=0.083 Sum_probs=46.0
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC----CCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI----DGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~----~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
.+|--|+ |+++..+++.+. ...+|+.+|.++- . .+ ..+.++ +.|+.+.+....+.+.+.
T Consensus 4 ~~lItGa--~gIG~~la~~l~--------~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~-~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVG--------AGKKVLLADYNEENLEAAAKTLREAGFDVSTQ-EVDVSSRESVKALAATAQ 72 (275)
T ss_pred EEEEECC--ChHHHHHHHHHh--------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE-EeecCCHHHHHHHHHHHH
Confidence 4555564 579889888874 3468888887641 1 01 135677 899999765544433221
Q ss_pred -CCCccEEEeCCCC
Q psy1489 134 -DDKLDVVLSDMAP 146 (229)
Q Consensus 134 -~~~~D~V~sd~~~ 146 (229)
-+.+|+++.++..
T Consensus 73 ~~g~id~li~nAG~ 86 (275)
T PRK06940 73 TLGPVTGLVHTAGV 86 (275)
T ss_pred hcCCCCEEEECCCc
Confidence 2468999998753
No 435
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.04 E-value=38 Score=27.95 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=48.1
Q ss_pred CCCeeEeecC-CCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC-----C----CCCCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGA-APGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-----I----YPIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGc-GpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~-----~----~~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.++++|=.|+ |+++++..+++++.. ...+|+.++... . ........+ +.|+.+.+....+.+
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~-------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dv~d~~~v~~~~~ 76 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKR-------EGAELAFTYVGDRFKDRITEFAAEFGSDLVF-PCDVASDEQIDALFA 76 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHH-------CCCeEEEEccchHHHHHHHHHHHhcCCccee-eccCCCHHHHHHHHH
Confidence 3678998998 578888888877742 224676664321 1 011223456 899998765544433
Q ss_pred HhC--CCCccEEEeCCCC
Q psy1489 131 ILK--DDKLDVVLSDMAP 146 (229)
Q Consensus 131 ~~~--~~~~D~V~sd~~~ 146 (229)
... -+.+|+++.++..
T Consensus 77 ~~~~~~g~iD~lvnnAG~ 94 (260)
T PRK06997 77 SLGQHWDGLDGLVHSIGF 94 (260)
T ss_pred HHHHHhCCCcEEEEcccc
Confidence 221 1579999998753
No 436
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=77.87 E-value=17 Score=30.63 Aligned_cols=95 Identities=9% Similarity=0.104 Sum_probs=51.5
Q ss_pred cCCCCeeEeecCC--CCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChh-HHHHHHHH
Q psy1489 59 LRPGLKVLDCGAA--PGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPD-IQDRLVTI 131 (229)
Q Consensus 59 ~~~g~~VLDlGcG--pG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~-~~~~i~~~ 131 (229)
+.+|.+||=.|++ .|..+..+++..+ ..++.++.++. ..+ .++..+ .+..+.+ ....+...
T Consensus 138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~ 205 (334)
T PTZ00354 138 VKKGQSVLIHAGASGVGTAAAQLAEKYG----------AATIITTSSEEKVDFCKKLAAIIL--IRYPDEEGFAPKVKKL 205 (334)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHcCCcEE--EecCChhHHHHHHHHH
Confidence 5678999988853 2555566666553 45555655441 000 122211 1112222 33334444
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
..+..+|+++.... ...+..+.+.|+++|+++..
T Consensus 206 ~~~~~~d~~i~~~~------------------~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 206 TGEKGVNLVLDCVG------------------GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred hCCCCceEEEECCc------------------hHHHHHHHHHhccCCeEEEE
Confidence 55667999997321 12345577788999998853
No 437
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=77.81 E-value=4.4 Score=35.35 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=50.6
Q ss_pred CccCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-----CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 57 KFLRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-----PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 57 ~~~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-----~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
...++|.+||-.|+|+ |..+..+++..+ .+|++++.++-. ..-++... -+..+. ..+..
T Consensus 176 ~~~~~g~~vlV~G~G~vG~~av~~Ak~~G----------~~vi~~~~~~~~~~~~~~~~Ga~~~--i~~~~~---~~~~~ 240 (357)
T PLN02514 176 GLKQSGLRGGILGLGGVGHMGVKIAKAMG----------HHVTVISSSDKKREEALEHLGADDY--LVSSDA---AEMQE 240 (357)
T ss_pred ccCCCCCeEEEEcccHHHHHHHHHHHHCC----------CeEEEEeCCHHHHHHHHHhcCCcEE--ecCCCh---HHHHH
Confidence 3346789999888766 555566666543 467777765410 11122211 111121 12222
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.. ..+|+|+-.. |. ...+..+.+.|+++|+++..
T Consensus 241 ~~--~~~D~vid~~-----g~------------~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 241 AA--DSLDYIIDTV-----PV------------FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred hc--CCCcEEEECC-----Cc------------hHHHHHHHHHhccCCEEEEE
Confidence 22 2589988632 11 12445577889999998863
No 438
>PRK06953 short chain dehydrogenase; Provisional
Probab=77.74 E-value=34 Score=27.24 Aligned_cols=74 Identities=20% Similarity=0.143 Sum_probs=48.1
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CC--CCCCeEEecCCCCChhHHHHHHHHhCCCCccE
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YP--IDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV 139 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~--~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~ 139 (229)
++|=.|+ +|+++..+++.+.. ...+|+.++.++. .. ..++.+. ..|+.+.+....+...+.+.++|+
T Consensus 3 ~vlvtG~-sg~iG~~la~~L~~-------~G~~v~~~~r~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~~~~~d~ 73 (222)
T PRK06953 3 TVLIVGA-SRGIGREFVRQYRA-------DGWRVIATARDAAALAALQALGAEAL-ALDVADPASVAGLAWKLDGEALDA 73 (222)
T ss_pred eEEEEcC-CCchhHHHHHHHHh-------CCCEEEEEECCHHHHHHHHhccceEE-EecCCCHHHHHHHHHHhcCCCCCE
Confidence 5666666 47777777776642 2358888887741 11 1245677 899999876555544454567999
Q ss_pred EEeCCCC
Q psy1489 140 VLSDMAP 146 (229)
Q Consensus 140 V~sd~~~ 146 (229)
|+.....
T Consensus 74 vi~~ag~ 80 (222)
T PRK06953 74 AVYVAGV 80 (222)
T ss_pred EEECCCc
Confidence 9987653
No 439
>PRK12742 oxidoreductase; Provisional
Probab=77.67 E-value=34 Score=27.30 Aligned_cols=74 Identities=19% Similarity=0.122 Sum_probs=43.4
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---C---CCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---P---IDGAVVLSKCDFTQPDIQDRLVTILKDD 135 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---~---~~~~~~~~~~D~~~~~~~~~i~~~~~~~ 135 (229)
+++||=.|+ +|+++..+++.+.. ...+|+.+...... . ..++.++ ..|+++......+... -+
T Consensus 6 ~k~vlItGa-sggIG~~~a~~l~~-------~G~~v~~~~~~~~~~~~~l~~~~~~~~~-~~D~~~~~~~~~~~~~--~~ 74 (237)
T PRK12742 6 GKKVLVLGG-SRGIGAAIVRRFVT-------DGANVRFTYAGSKDAAERLAQETGATAV-QTDSADRDAVIDVVRK--SG 74 (237)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH-------CCCEEEEecCCCHHHHHHHHHHhCCeEE-ecCCCCHHHHHHHHHH--hC
Confidence 678888876 66677777766541 22467665442211 1 1135667 7899886544333322 24
Q ss_pred CccEEEeCCCC
Q psy1489 136 KLDVVLSDMAP 146 (229)
Q Consensus 136 ~~D~V~sd~~~ 146 (229)
.+|+++.+...
T Consensus 75 ~id~li~~ag~ 85 (237)
T PRK12742 75 ALDILVVNAGI 85 (237)
T ss_pred CCcEEEECCCC
Confidence 68999987653
No 440
>KOG2078|consensus
Probab=77.63 E-value=1.2 Score=40.05 Aligned_cols=37 Identities=30% Similarity=0.307 Sum_probs=33.0
Q ss_pred CccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 57 KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 57 ~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
+++++|..|.|+.||-|-++..++.. .++|++.|+++
T Consensus 245 g~fk~gevv~D~FaGvGPfa~Pa~kK-----------~crV~aNDLNp 281 (495)
T KOG2078|consen 245 GLFKPGEVVCDVFAGVGPFALPAAKK-----------GCRVYANDLNP 281 (495)
T ss_pred hccCCcchhhhhhcCcCccccchhhc-----------CcEEEecCCCH
Confidence 36789999999999999999998875 28999999997
No 441
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=77.61 E-value=15 Score=32.29 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=53.1
Q ss_pred hhhhHhhhhhcCccCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC----CCCeEEecCCCCC
Q psy1489 46 AFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI----DGAVVLSKCDFTQ 121 (229)
Q Consensus 46 ~~kl~~i~~~~~~~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~----~~~~~~~~~D~~~ 121 (229)
+|.|.++...-.++..+++||-.| |+|.++..+++.+.. ...+|+++|...-... ..+.++ .+|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~IlVtG-gtGfIG~~l~~~L~~-------~G~~V~~v~r~~~~~~~~~~~~~~~~-~~Dl~d 75 (370)
T PLN02695 5 AYTLAELEREPYWPSEKLRICITG-AGGFIASHIARRLKA-------EGHYIIASDWKKNEHMSEDMFCHEFH-LVDLRV 75 (370)
T ss_pred ccchhhcCCCCCCCCCCCEEEEEC-CccHHHHHHHHHHHh-------CCCEEEEEEeccccccccccccceEE-ECCCCC
Confidence 345555544444556778999776 678888888877741 2247999986531111 135677 899998
Q ss_pred hhHHHHHHHHhCCCCccEEEeCCC
Q psy1489 122 PDIQDRLVTILKDDKLDVVLSDMA 145 (229)
Q Consensus 122 ~~~~~~i~~~~~~~~~D~V~sd~~ 145 (229)
...... .+ ..+|.|+.-+.
T Consensus 76 ~~~~~~---~~--~~~D~Vih~Aa 94 (370)
T PLN02695 76 MENCLK---VT--KGVDHVFNLAA 94 (370)
T ss_pred HHHHHH---HH--hCCCEEEEccc
Confidence 653322 22 25798886553
No 442
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=77.38 E-value=19 Score=30.47 Aligned_cols=93 Identities=22% Similarity=0.313 Sum_probs=51.7
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----CCCCCC-eEEecCCCCChhHHHHHHH
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----YPIDGA-VVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~~~~~~-~~~~~~D~~~~~~~~~i~~ 130 (229)
+.++.+||=.|+ |+ |..+..+++..+ .+|++++.++. ....++ .++ +..+.+....+..
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~G----------~~vi~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~v~~ 209 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLLG----------ARVVGIAGSDEKCRWLVEELGFDAAI---NYKTPDLAEALKE 209 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHhhcCCceEE---ecCChhHHHHHHH
Confidence 467889998884 33 445555555543 57888876541 110122 222 2222233333444
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.. +..+|+++... | ...+..+.+.|+++|+++..
T Consensus 210 ~~-~~~~d~vi~~~-----g-------------~~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 210 AA-PDGIDVYFDNV-----G-------------GEILDAALTLLNKGGRIALC 243 (329)
T ss_pred hc-cCCceEEEEcc-----h-------------HHHHHHHHHhcCCCceEEEE
Confidence 33 35799998622 1 12455678889999998753
No 443
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=77.15 E-value=15 Score=31.40 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=48.8
Q ss_pred CCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-CCC---CCC-eEEecCCCCChhHHHHHHHHh-C
Q psy1489 61 PGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-YPI---DGA-VVLSKCDFTQPDIQDRLVTIL-K 133 (229)
Q Consensus 61 ~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~~~---~~~-~~~~~~D~~~~~~~~~i~~~~-~ 133 (229)
++.+||..|||. |..+..+++..+ ..+|++++.++- ..+ .++ .++ |..+.. +.... .
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G---------~~~v~~~~~s~~~~~~~~~~g~~~vi---~~~~~~----~~~~~~~ 228 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAG---------AAEIVATDLADAPLAVARAMGADETV---NLARDP----LAAYAAD 228 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC---------CcEEEEECCCHHHHHHHHHcCCCEEE---cCCchh----hhhhhcc
Confidence 789999988754 445555555543 226888887651 000 111 222 222211 11111 1
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
...+|+|+..... ...+..+.+.|+++|+++.-
T Consensus 229 ~~~vd~vld~~g~-----------------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 229 KGDFDVVFEASGA-----------------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred CCCccEEEECCCC-----------------HHHHHHHHHHHhcCCEEEEE
Confidence 2459999973311 12345677889999999863
No 444
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=76.88 E-value=2.1 Score=38.21 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.9
Q ss_pred CCeeEeecCCCCchHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAV 80 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la 80 (229)
..+|+|+|||+|..+..+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 5689999999998886654
No 445
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=76.79 E-value=16 Score=32.61 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=47.3
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CCC-----CCCCeEEecCCCCChhHHHHHHHHhCCC
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IYP-----IDGAVVLSKCDFTQPDIQDRLVTILKDD 135 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~~-----~~~~~~~~~~D~~~~~~~~~i~~~~~~~ 135 (229)
++||-||| |+.++.++..+..+ .+..|+..|.++ ... ..+++.+ +.|+.+.+....+ +.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~------~d~~V~iAdRs~~~~~~i~~~~~~~v~~~-~vD~~d~~al~~l---i~-- 67 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQN------GDGEVTIADRSKEKCARIAELIGGKVEAL-QVDAADVDALVAL---IK-- 67 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhC------CCceEEEEeCCHHHHHHHHhhccccceeE-EecccChHHHHHH---Hh--
Confidence 47899999 77777777765421 336999999985 111 2367888 8999987544333 32
Q ss_pred CccEEEeCCCC
Q psy1489 136 KLDVVLSDMAP 146 (229)
Q Consensus 136 ~~D~V~sd~~~ 146 (229)
.+|+|++-.++
T Consensus 68 ~~d~VIn~~p~ 78 (389)
T COG1748 68 DFDLVINAAPP 78 (389)
T ss_pred cCCEEEEeCCc
Confidence 35999986654
No 446
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=76.62 E-value=4.2 Score=33.66 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=48.8
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcE-EEEEeCCCCCCCCCCeEEe-cCCCCChhHHHHHHHHhCCC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPIYPIDGAVVLS-KCDFTQPDIQDRLVTILKDD 135 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~~~~~~~~~~~~-~~D~~~~~~~~~i~~~~~~~ 135 (229)
+.+|++||-.|||+ |..+..+++..+ .+ |++++.++- ....+.-.+ ...+... ........
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g----------~~~vi~~~~~~~-~~~~~~~~g~~~~~~~~-----~~~~~~~~ 158 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAG----------AREVVGVDPDAA-RRELAEALGPADPVAAD-----TADEIGGR 158 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----------CCcEEEECCCHH-HHHHHHHcCCCcccccc-----chhhhcCC
Confidence 56789999998765 555555666553 34 888887641 100000000 0000110 00112345
Q ss_pred CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 136 KLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 136 ~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.+|+|+..... ...+..+.+.|+++|+++.-
T Consensus 159 ~~d~vl~~~~~-----------------~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 159 GADVVIEASGS-----------------PSALETALRLLRDRGRVVLV 189 (277)
T ss_pred CCCEEEEccCC-----------------hHHHHHHHHHhcCCcEEEEE
Confidence 79999863211 12345577789999998753
No 447
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=76.52 E-value=43 Score=27.89 Aligned_cols=70 Identities=24% Similarity=0.220 Sum_probs=46.2
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCCC---CCCeEEecCCCCChhHHHHHHHHhCCCCccEE
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPI---DGAVVLSKCDFTQPDIQDRLVTILKDDKLDVV 140 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~~---~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V 140 (229)
.||-.|+ +|.++..+++++.. ....|+++|.+..... .++.++ .+|+++.+...... .... |.|
T Consensus 2 ~ILVtG~-tGfiG~~l~~~L~~-------~g~~V~~~~r~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~---~~~~-d~v 68 (314)
T COG0451 2 RILVTGG-AGFIGSHLVERLLA-------AGHDVRGLDRLRDGLDPLLSGVEFV-VLDLTDRDLVDELA---KGVP-DAV 68 (314)
T ss_pred eEEEEcC-cccHHHHHHHHHHh-------CCCeEEEEeCCCcccccccccccee-eecccchHHHHHHH---hcCC-CEE
Confidence 3777787 99999999988852 2358999998762211 356777 88888864333222 1112 999
Q ss_pred EeCCCC
Q psy1489 141 LSDMAP 146 (229)
Q Consensus 141 ~sd~~~ 146 (229)
+..++.
T Consensus 69 ih~aa~ 74 (314)
T COG0451 69 IHLAAQ 74 (314)
T ss_pred EEcccc
Confidence 987654
No 448
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=76.20 E-value=26 Score=28.52 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=48.8
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC----CCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI----DGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~----~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.+++||=.| |+|+++..+++++.+ ...+|+.++.++- . .+ ..+.++ +.|+.+.+....+..
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~-------~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~-~~D~~~~~~~~~~~~ 79 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQ-------AGAEVILNGRDPAKLAAAAESLKGQGLSAHAL-AFDVTDHDAVRAAID 79 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHH-------cCCEEEEEeCCHHHHHHHHHHHHhcCceEEEE-EccCCCHHHHHHHHH
Confidence 467899888 467888888876642 2358888887641 0 11 125667 889998764443322
Q ss_pred HhC--CCCccEEEeCCCC
Q psy1489 131 ILK--DDKLDVVLSDMAP 146 (229)
Q Consensus 131 ~~~--~~~~D~V~sd~~~ 146 (229)
... -+..|.|+.++..
T Consensus 80 ~~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 80 AFEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 211 2468999987754
No 449
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=75.80 E-value=40 Score=31.80 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=46.1
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------C----------CCCCeEEecCCCC
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------P----------IDGAVVLSKCDFT 120 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------~----------~~~~~~~~~~D~~ 120 (229)
+.|..||-.|+ +|+++..+++++.. ...+|++++.+.- . . ..++.++ .+|+.
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk-------~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV-~gDLt 148 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLK-------LGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIV-ECDLE 148 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHH-------CCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEE-EecCC
Confidence 35677887776 58888888877642 2347888876541 0 0 1236778 89999
Q ss_pred ChhHHHHHHHHhCCCCccEEEeCCC
Q psy1489 121 QPDIQDRLVTILKDDKLDVVLSDMA 145 (229)
Q Consensus 121 ~~~~~~~i~~~~~~~~~D~V~sd~~ 145 (229)
+.+.. ...+ +.+|+|++.+.
T Consensus 149 D~esI---~~aL--ggiDiVVn~AG 168 (576)
T PLN03209 149 KPDQI---GPAL--GNASVVICCIG 168 (576)
T ss_pred CHHHH---HHHh--cCCCEEEEccc
Confidence 86533 2333 35899998764
No 450
>KOG1197|consensus
Probab=75.55 E-value=30 Score=29.38 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=56.0
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CCCCCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YPIDGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~~~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
+++|++||-- +.-|+....+.+.... ...++++.-.+.. ..-.+++. .-|....+....+..+-.+
T Consensus 144 vkpGhtVlvh-aAAGGVGlll~Ql~ra-------~~a~tI~~asTaeK~~~akenG~~h--~I~y~~eD~v~~V~kiTng 213 (336)
T KOG1197|consen 144 VKPGHTVLVH-AAAGGVGLLLCQLLRA-------VGAHTIATASTAEKHEIAKENGAEH--PIDYSTEDYVDEVKKITNG 213 (336)
T ss_pred CCCCCEEEEE-eccccHHHHHHHHHHh-------cCcEEEEEeccHHHHHHHHhcCCcc--eeeccchhHHHHHHhccCC
Confidence 6899998854 4455555555555431 2357777765541 11123432 1234444455556665557
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
..+|+++-.... ..+......||++|.++-
T Consensus 214 KGVd~vyDsvG~------------------dt~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 214 KGVDAVYDSVGK------------------DTFAKSLAALKPMGKMVS 243 (336)
T ss_pred CCceeeeccccc------------------hhhHHHHHHhccCceEEE
Confidence 789998874321 234456778999999874
No 451
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=75.41 E-value=19 Score=30.30 Aligned_cols=95 Identities=32% Similarity=0.356 Sum_probs=51.8
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
++++.+||=.|+ |+ |..+..+++..+ .+|++++.++- ..+ .++..+ -+..+.+....+....
T Consensus 140 ~~~~~~vlI~g~~~~~g~~~~~la~~~g----------~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~ 207 (324)
T cd08244 140 LTPGDVVLVTAAAGGLGSLLVQLAKAAG----------ATVVGAAGGPAKTALVRALGADVA--VDYTRPDWPDQVREAL 207 (324)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHHcCCCEE--EecCCccHHHHHHHHc
Confidence 467888988885 22 445555555543 57888876541 000 122111 1222223333344445
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.+..+|+|+... |. .....+.+.|+++|+++.-
T Consensus 208 ~~~~~d~vl~~~-----g~-------------~~~~~~~~~l~~~g~~v~~ 240 (324)
T cd08244 208 GGGGVTVVLDGV-----GG-------------AIGRAALALLAPGGRFLTY 240 (324)
T ss_pred CCCCceEEEECC-----Ch-------------HhHHHHHHHhccCcEEEEE
Confidence 556799999732 10 1234577888999998853
No 452
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=75.40 E-value=20 Score=30.17 Aligned_cols=93 Identities=19% Similarity=0.301 Sum_probs=49.8
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----CCCCCCe-EEecCCCCC-hhHHHHHHH
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----YPIDGAV-VLSKCDFTQ-PDIQDRLVT 130 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----~~~~~~~-~~~~~D~~~-~~~~~~i~~ 130 (229)
+.+|.+|+=.|+|+ |..+..+++..+ .+|+.++.++- ... ++. ++ +..+ ......+..
T Consensus 158 ~~~g~~vli~g~g~~g~~~~~~a~~~G----------~~v~~~~~~~~~~~~~~~~-g~~~~~---~~~~~~~~~~~~~~ 223 (336)
T cd08276 158 LKPGDTVLVQGTGGVSLFALQFAKAAG----------ARVIATSSSDEKLERAKAL-GADHVI---NYRTTPDWGEEVLK 223 (336)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHc-CCCEEE---cCCcccCHHHHHHH
Confidence 56788887665443 223333444432 57888876641 011 222 22 1112 223334444
Q ss_pred HhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 131 ILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
...+..+|+++..... ..+..+.+.|+++|+++.-
T Consensus 224 ~~~~~~~d~~i~~~~~------------------~~~~~~~~~l~~~G~~v~~ 258 (336)
T cd08276 224 LTGGRGVDHVVEVGGP------------------GTLAQSIKAVAPGGVISLI 258 (336)
T ss_pred HcCCCCCcEEEECCCh------------------HHHHHHHHhhcCCCEEEEE
Confidence 4555679999973210 2345577889999998753
No 453
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=75.36 E-value=53 Score=28.39 Aligned_cols=71 Identities=15% Similarity=0.102 Sum_probs=46.1
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---------------CCCCCeEEecCCCCChhHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---------------PIDGAVVLSKCDFTQPDIQ 125 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---------------~~~~~~~~~~~D~~~~~~~ 125 (229)
.+++||-.| |+|..+.++++++.. ...+|+++|...-. ....+.++ .+|+.+....
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~-------~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Di~d~~~l 84 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLF-------LNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFI-QGDIRKFTDC 84 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHH-------CCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEE-EccCCCHHHH
Confidence 457888877 678888888877741 22489999974310 01246678 8999986543
Q ss_pred HHHHHHhCCCCccEEEeCCC
Q psy1489 126 DRLVTILKDDKLDVVLSDMA 145 (229)
Q Consensus 126 ~~i~~~~~~~~~D~V~sd~~ 145 (229)
. ..+. .+|+|+.-++
T Consensus 85 ~---~~~~--~~d~ViHlAa 99 (348)
T PRK15181 85 Q---KACK--NVDYVLHQAA 99 (348)
T ss_pred H---HHhh--CCCEEEECcc
Confidence 3 2232 4899997664
No 454
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=75.25 E-value=17 Score=30.86 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=52.5
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----CCCCC-eEEecCCCCChhHHHHHHHH
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----PIDGA-VVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----~~~~~-~~~~~~D~~~~~~~~~i~~~ 131 (229)
+.+|.+|+=.|. |+ |..+..+++..| .+|++++.++-. .-.++ .++ .. .+......+...
T Consensus 138 ~~~g~~vlI~g~~g~ig~~~~~lak~~G----------~~v~~~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~~~~ 204 (327)
T PRK10754 138 IKPDEQFLFHAAAGGVGLIACQWAKALG----------AKLIGTVGSAQKAQRAKKAGAWQVI-NY--REENIVERVKEI 204 (327)
T ss_pred CCCCCEEEEEeCCcHHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHCCCCEEE-cC--CCCcHHHHHHHH
Confidence 567889988763 33 555566666654 578888766410 00122 222 22 222333345555
Q ss_pred hCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 132 LKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 132 ~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
..+..+|+|+... + ...+..+.+.|+++|+++.-
T Consensus 205 ~~~~~~d~vl~~~-----~-------------~~~~~~~~~~l~~~g~~v~~ 238 (327)
T PRK10754 205 TGGKKVRVVYDSV-----G-------------KDTWEASLDCLQRRGLMVSF 238 (327)
T ss_pred cCCCCeEEEEECC-----c-------------HHHHHHHHHHhccCCEEEEE
Confidence 5566799998622 1 01234467788999998853
No 455
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=75.23 E-value=31 Score=29.20 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=50.6
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-CC-----CCCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-YP-----IDGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~~-----~~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+.++.+||-.| +|..+..+.+.... ...+|+.+..+.- .. -.++.. . +....+....+....
T Consensus 162 ~~~g~~vlI~g--~g~~g~~~~~la~~-------~G~~v~~~~~~~~~~~~~~~~~~g~~~--~-~~~~~~~~~~l~~~~ 229 (306)
T cd08258 162 IRPGDTVVVFG--PGPIGLLAAQVAKL-------QGATVVVVGTEKDEVRLDVAKELGADA--V-NGGEEDLAELVNEIT 229 (306)
T ss_pred CCCCCEEEEEC--CCHHHHHHHHHHHH-------cCCEEEEECCCCCHHHHHHHHHhCCcc--c-CCCcCCHHHHHHHHc
Confidence 45788888755 45555554433221 1246666633210 00 012211 1 222333334454445
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeec
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~ 185 (229)
.+..+|+++..... ...+..+.+.|+++|+++.--.
T Consensus 230 ~~~~vd~vld~~g~-----------------~~~~~~~~~~l~~~G~~v~~g~ 265 (306)
T cd08258 230 DGDGADVVIECSGA-----------------VPALEQALELLRKGGRIVQVGI 265 (306)
T ss_pred CCCCCCEEEECCCC-----------------hHHHHHHHHHhhcCCEEEEEcc
Confidence 56679999973210 1245567788999999986433
No 456
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=75.14 E-value=25 Score=29.65 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=49.9
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--CC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--PI--DGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~~--~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
...+.+||=.|+ |+ |..+..+|+..+ .+|+.++.++-. .+ .++..+ -+..+.. ...+.. +
T Consensus 144 ~~~~~~vlI~g~~g~vg~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~v--~~~~~~~-~~~~~~-~ 209 (326)
T cd08289 144 TPEQGPVLVTGATGGVGSLAVSILAKLG----------YEVVASTGKADAADYLKKLGAKEV--IPREELQ-EESIKP-L 209 (326)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCC----------CeEEEEecCHHHHHHHHHcCCCEE--EcchhHH-HHHHHh-h
Confidence 345679998887 33 444455555543 478888776510 00 122211 1112221 122322 2
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEee
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKI 184 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~ 184 (229)
.+..+|+|+... | ...+..+.+.|+++|+++..-
T Consensus 210 ~~~~~d~vld~~-----g-------------~~~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 210 EKQRWAGAVDPV-----G-------------GKTLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred ccCCcCEEEECC-----c-------------HHHHHHHHHHhhcCCEEEEEe
Confidence 345699988622 1 023455778899999998643
No 457
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=75.04 E-value=5.4 Score=34.44 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489 162 LAIAVIRFAVTYSKPGADCLIKIWDGRN 189 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~~v~~~~~~~~ 189 (229)
.+...|..+..+|+|||++++-.|+.-+
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSLE 245 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSLE 245 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHH
Confidence 4557889999999999999997787654
No 458
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=74.98 E-value=15 Score=33.03 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=32.8
Q ss_pred CccEEEe-CCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecCCC-ChHHHHHHH
Q psy1489 136 KLDVVLS-DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGR-NRPQLEESI 197 (229)
Q Consensus 136 ~~D~V~s-d~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~~~-~~~~~~~~l 197 (229)
.+|+++. -+.|. .+.++.| +.....+.+.+..+|++|-.++++--..+ .++++...+
T Consensus 84 ~~dv~iI~VPTPl-~~~~~pD----ls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~pl 142 (436)
T COG0677 84 ECDVFIICVPTPL-KKYREPD----LSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPL 142 (436)
T ss_pred cCCEEEEEecCCc-CCCCCCC----hHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHH
Confidence 5676664 33332 2223333 24456778889999999998888653333 344554433
No 459
>KOG3924|consensus
Probab=74.62 E-value=19 Score=32.24 Aligned_cols=96 Identities=13% Similarity=0.177 Sum_probs=61.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC----CC----------------CCCCCeEEecCC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP----IY----------------PIDGAVVLSKCD 118 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~----~~----------------~~~~~~~~~~~D 118 (229)
+.+++...|||.|-|+....++...+ ...-+|+++.. +. ....+..+ +++
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~---------~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i-~gs 259 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAG---------CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI-HGS 259 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhc---------cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec-ccc
Confidence 46789999999999999888777653 23456777764 10 11235667 999
Q ss_pred CCChhHHHHHHHHhCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEE
Q psy1489 119 FTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCL 181 (229)
Q Consensus 119 ~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v 181 (229)
+.++.....|. ...++|+++-.- .|.....+ +.+.+.-+++|=+++
T Consensus 260 f~~~~~v~eI~-----~eatvi~vNN~~-------Fdp~L~lr-----~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 260 FLDPKRVTEIQ-----TEATVIFVNNVA-------FDPELKLR-----SKEILQKCKDGTRII 305 (419)
T ss_pred cCCHHHHHHHh-----hcceEEEEeccc-------CCHHHHHh-----hHHHHhhCCCcceEe
Confidence 99988776654 357888875421 22322222 225666677777765
No 460
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=73.85 E-value=24 Score=29.67 Aligned_cols=95 Identities=23% Similarity=0.251 Sum_probs=51.6
Q ss_pred cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--CC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--PI--DGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~~--~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+.++.+||-.|++. |.....++...+ .+|+.++.++.. .+ .+...+ .+..+......+....
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g----------~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 231 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLFG----------ATVIATAGSEDKLERAKELGADYV--IDYRKEDFVREVRELT 231 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHcCCCeE--EecCChHHHHHHHHHh
Confidence 45788999888764 333333444332 578888766410 00 011111 2333333334444444
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.+..+|+++..... ..+..+.+.|+++|+++..
T Consensus 232 ~~~~~d~~i~~~g~------------------~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 232 GKRGVDVVVEHVGA------------------ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCCCcEEEECCcH------------------HHHHHHHHHhhcCCEEEEE
Confidence 45679999974321 1234466788999998753
No 461
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=73.55 E-value=30 Score=30.42 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=23.5
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
+.++.+||=.|+ |+ |..+..+++..+ .++++++.++
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G----------~~vv~~~~s~ 228 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAG----------ANPVAVVSSE 228 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcC----------CeEEEEeCCH
Confidence 467889999997 33 444455555543 4677777654
No 462
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=73.47 E-value=6.4 Score=34.20 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=42.8
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------CCCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------PIDGAVVLSKCDFTQPDIQDRLVTILKDDK 136 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~ 136 (229)
.+++||.||-|+++.-+... + --.+.++|+++.. ..+...++ ..|+...... .+....
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-g---------f~~~~a~Eid~~a~~ty~~n~~~~~~~-~~di~~~~~~-----~~~~~~ 67 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-G---------FEIVFANEIDPPAVATYKANFPHGDII-LGDIKELDGE-----ALRKSD 67 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-C---------CeEEEEEecCHHHHHHHHHhCCCCcee-echHhhcChh-----hccccC
Confidence 57999999999999775543 2 2368899998721 12323444 5666553211 122227
Q ss_pred ccEEEeCCCC
Q psy1489 137 LDVVLSDMAP 146 (229)
Q Consensus 137 ~D~V~sd~~~ 146 (229)
+|+++...++
T Consensus 68 ~DvligGpPC 77 (328)
T COG0270 68 VDVLIGGPPC 77 (328)
T ss_pred CCEEEeCCCC
Confidence 9999997764
No 463
>PRK06180 short chain dehydrogenase; Provisional
Probab=73.36 E-value=52 Score=27.26 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=47.4
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C---C--CCCCeEEecCCCCChhHHHHHHHHhC-
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y---P--IDGAVVLSKCDFTQPDIQDRLVTILK- 133 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~---~--~~~~~~~~~~D~~~~~~~~~i~~~~~- 133 (229)
+.+||-.|+ +|+++..+++++.. ...+|++++.++- . . -.++.++ ..|+++.+....+.+...
T Consensus 4 ~~~vlVtGa-sggiG~~la~~l~~-------~G~~V~~~~r~~~~~~~l~~~~~~~~~~~-~~D~~d~~~~~~~~~~~~~ 74 (277)
T PRK06180 4 MKTWLITGV-SSGFGRALAQAALA-------AGHRVVGTVRSEAARADFEALHPDRALAR-LLDVTDFDAIDAVVADAEA 74 (277)
T ss_pred CCEEEEecC-CChHHHHHHHHHHh-------CcCEEEEEeCCHHHHHHHHhhcCCCeeEE-EccCCCHHHHHHHHHHHHH
Confidence 567887776 45677777776642 2358999987651 0 1 1246677 899999765443322111
Q ss_pred -CCCccEEEeCCCC
Q psy1489 134 -DDKLDVVLSDMAP 146 (229)
Q Consensus 134 -~~~~D~V~sd~~~ 146 (229)
-+.+|+|+.+...
T Consensus 75 ~~~~~d~vv~~ag~ 88 (277)
T PRK06180 75 TFGPIDVLVNNAGY 88 (277)
T ss_pred HhCCCCEEEECCCc
Confidence 1368999987754
No 464
>PRK07904 short chain dehydrogenase; Provisional
Probab=72.82 E-value=31 Score=28.33 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=48.7
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC----------C--CCCCeEEecCCCCChhHHHH
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY----------P--IDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~----------~--~~~~~~~~~~D~~~~~~~~~ 127 (229)
..+.+||-.|+ +|+++..+++.+... +..+|+.++.++-. . ..+++++ +.|+.+......
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~------gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~-~~D~~~~~~~~~ 77 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKN------APARVVLAALPDDPRRDAAVAQMKAAGASSVEVI-DFDALDTDSHPK 77 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhc------CCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEE-EecCCChHHHHH
Confidence 35678998888 567777777765311 12488888776411 0 1256788 899998764333
Q ss_pred -HHHHhCCCCccEEEeCCC
Q psy1489 128 -LVTILKDDKLDVVLSDMA 145 (229)
Q Consensus 128 -i~~~~~~~~~D~V~sd~~ 145 (229)
+......+..|+++.+..
T Consensus 78 ~~~~~~~~g~id~li~~ag 96 (253)
T PRK07904 78 VIDAAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHHHHhcCCCCEEEEeee
Confidence 333333357999887654
No 465
>PRK13699 putative methylase; Provisional
Probab=72.67 E-value=3.6 Score=33.86 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=27.7
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
-.+|+.|||--||+|..+..+. +.+ -+.+|+|+++
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~-~~~----------r~~~g~e~~~ 195 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAAL-QSG----------RRYIGIELLE 195 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHH-HcC----------CCEEEEecCH
Confidence 3589999999999998776644 433 4789999987
No 466
>PLN02572 UDP-sulfoquinovose synthase
Probab=72.50 E-value=57 Score=29.53 Aligned_cols=73 Identities=18% Similarity=0.061 Sum_probs=46.7
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC---CC---------C---------------CCCCeE
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP---IY---------P---------------IDGAVV 113 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~---~~---------~---------------~~~~~~ 113 (229)
++++||-.| |+|.++.++++++.. ....|+++|... .. + -.++++
T Consensus 46 ~~k~VLVTG-atGfIGs~Lv~~L~~-------~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~ 117 (442)
T PLN02572 46 KKKKVMVIG-GDGYCGWATALHLSK-------RGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIEL 117 (442)
T ss_pred cCCEEEEEC-CCcHHHHHHHHHHHH-------CCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceE
Confidence 357788765 678888888887742 234888887321 00 0 024778
Q ss_pred EecCCCCChhHHHHHHHHhCCCCccEEEeCCC
Q psy1489 114 LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMA 145 (229)
Q Consensus 114 ~~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~ 145 (229)
+ .+|+.+......+ +.+..+|.|+..+.
T Consensus 118 v-~~Dl~d~~~v~~~---l~~~~~D~ViHlAa 145 (442)
T PLN02572 118 Y-VGDICDFEFLSEA---FKSFEPDAVVHFGE 145 (442)
T ss_pred E-ECCCCCHHHHHHH---HHhCCCCEEEECCC
Confidence 8 8999987544332 33346899998653
No 467
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=72.47 E-value=3.9 Score=35.19 Aligned_cols=69 Identities=9% Similarity=0.113 Sum_probs=32.1
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-----------C-CCC-CCeEEecC---CCCChhHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------Y-PID-GAVVLSKC---DFTQPDIQ 125 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-----------~-~~~-~~~~~~~~---D~~~~~~~ 125 (229)
.-++||+|+|.-.+-..|..+.. ..+++|.|+++. . .+. .+++..+. ++.+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~---------~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~--- 170 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY---------GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDG--- 170 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-----------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTT---
T ss_pred ceEeecCCccHHHHHHHHhhhhc---------CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchh---
Confidence 45899999999776544444432 369999999861 1 122 34444121 12211
Q ss_pred HHHHHHhCCCCccEEEeCCCC
Q psy1489 126 DRLVTILKDDKLDVVLSDMAP 146 (229)
Q Consensus 126 ~~i~~~~~~~~~D~V~sd~~~ 146 (229)
+. .+.+.||+.+|++++
T Consensus 171 --i~--~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 171 --II--QPNERFDFTMCNPPF 187 (299)
T ss_dssp --ST--T--S-EEEEEE----
T ss_pred --hh--cccceeeEEecCCcc
Confidence 11 124589999999875
No 468
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=72.27 E-value=41 Score=27.41 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=48.5
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------CC-CCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------PI-DGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------~~-~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
++.++|-.| |+|+++..+++++.. ...+|+.++.++- . .. ..+.++ .+|+.+.+....+..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~-------~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~-~~Dl~d~~~i~~~~~ 81 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGE-------AGARVVLSARKAEELEEAAAHLEALGIDALWI-AADVADEADIERLAE 81 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-------cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE-EccCCCHHHHHHHHH
Confidence 467888888 577888888877642 2247888887641 0 00 135577 899999765533322
Q ss_pred Hh-C-CCCccEEEeCCC
Q psy1489 131 IL-K-DDKLDVVLSDMA 145 (229)
Q Consensus 131 ~~-~-~~~~D~V~sd~~ 145 (229)
.+ . -+.+|.|+..+.
T Consensus 82 ~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 82 ETLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 21 1 146899998764
No 469
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=71.95 E-value=7.1 Score=33.55 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489 162 LAIAVIRFAVTYSKPGADCLIKIWDGRN 189 (229)
Q Consensus 162 ~~~~~l~~~~~~LkpgG~~v~~~~~~~~ 189 (229)
.+...|..+..+|+|||++++-.|+.-+
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSlE 241 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSLE 241 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHH
Confidence 4457889999999999999998887654
No 470
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=71.86 E-value=39 Score=28.03 Aligned_cols=96 Identities=20% Similarity=0.323 Sum_probs=50.6
Q ss_pred cCCCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHhCC
Q psy1489 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTILKD 134 (229)
Q Consensus 59 ~~~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~~~ 134 (229)
+.+|.+||=.|+ +|+++..+++.... ...+|+.++.++- ..+ .++..+ -|....+....+....++
T Consensus 142 ~~~g~~vlI~g~-~~~~g~~~~~~a~~-------~g~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~ 211 (325)
T cd08253 142 AKAGETVLVHGG-SGAVGHAAVQLARW-------AGARVIATASSAEGAELVRQAGADAV--FNYRAEDLADRILAATAG 211 (325)
T ss_pred CCCCCEEEEEcC-CchHHHHHHHHHHH-------cCCEEEEEeCCHHHHHHHHHcCCCEE--EeCCCcCHHHHHHHHcCC
Confidence 467889998886 35555554443321 2257888876541 000 122211 122233333344444455
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 135 DKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 135 ~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
..+|+|+..... ..+....+.|+++|+++.
T Consensus 212 ~~~d~vi~~~~~------------------~~~~~~~~~l~~~g~~v~ 241 (325)
T cd08253 212 QGVDVIIEVLAN------------------VNLAKDLDVLAPGGRIVV 241 (325)
T ss_pred CceEEEEECCch------------------HHHHHHHHhhCCCCEEEE
Confidence 679999974321 112345577888898874
No 471
>PRK07109 short chain dehydrogenase; Provisional
Probab=71.79 E-value=39 Score=29.16 Aligned_cols=77 Identities=10% Similarity=0.061 Sum_probs=46.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC----CCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI----DGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~----~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
++..||-.|+ +|+++..+++.+.. ...+|+.++.++- . .+ ..+.++ .+|+.+.+....+.+
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~-------~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v-~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFAR-------RGAKVVLLARGEEGLEALAAEIRAAGGEALAV-VADVADAEAVQAAAD 77 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEE-EecCCCHHHHHHHHH
Confidence 3567887775 56677777766542 2257888887641 1 01 235677 899999765444332
Q ss_pred HhC--CCCccEEEeCCCC
Q psy1489 131 ILK--DDKLDVVLSDMAP 146 (229)
Q Consensus 131 ~~~--~~~~D~V~sd~~~ 146 (229)
... -+.+|+++.+...
T Consensus 78 ~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 78 RAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHCCCCCEEEECCCc
Confidence 211 1468999987753
No 472
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=71.69 E-value=22 Score=33.71 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=55.3
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C--CCCCCeEEecCCCCChhHHHHHHHHhCCCCccE
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y--PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV 139 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~ 139 (229)
.|+= ||-|.+++.+++.+.. ....++.+|.++- + ...+..++ .+|.++++.... ..-++.|.
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~-------~g~~vvvID~d~~~v~~~~~~g~~v~-~GDat~~~~L~~----agi~~A~~ 467 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMA-------NKMRITVLERDISAVNLMRKYGYKVY-YGDATQLELLRA----AGAEKAEA 467 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHh-------CCCCEEEEECCHHHHHHHHhCCCeEE-EeeCCCHHHHHh----cCCccCCE
Confidence 4554 4555666677765531 2347999999871 1 12466778 999999875432 23357888
Q ss_pred EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 140 V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
|++... |...+ .. +....+.+.|.-.++....+
T Consensus 468 vv~~~~---------d~~~n----~~-i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 468 IVITCN---------EPEDT----MK-IVELCQQHFPHLHILARARG 500 (601)
T ss_pred EEEEeC---------CHHHH----HH-HHHHHHHHCCCCeEEEEeCC
Confidence 888432 12111 12 22234456777777776543
No 473
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=71.56 E-value=65 Score=27.65 Aligned_cols=71 Identities=14% Similarity=0.009 Sum_probs=44.7
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC----CC------------CCCCeEEecCCCCChhHHHH
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI----YP------------IDGAVVLSKCDFTQPDIQDR 127 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~----~~------------~~~~~~~~~~D~~~~~~~~~ 127 (229)
+||-.| |+|.++.++++++.. ...+|+++|.++- .. -.++.++ .+|+++.+....
T Consensus 2 ~vlVTG-atGfIG~~l~~~L~~-------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~l~~ 72 (343)
T TIGR01472 2 IALITG-ITGQDGSYLAEFLLE-------KGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLH-YGDLTDSSNLRR 72 (343)
T ss_pred eEEEEc-CCCcHHHHHHHHHHH-------CCCEEEEEecCCcccchhhhhhhhhccccccccceeEE-EeccCCHHHHHH
Confidence 344444 568888888887742 2348999887541 00 0246788 899998764433
Q ss_pred HHHHhCCCCccEEEeCCCC
Q psy1489 128 LVTILKDDKLDVVLSDMAP 146 (229)
Q Consensus 128 i~~~~~~~~~D~V~sd~~~ 146 (229)
.+....+|+|+..++.
T Consensus 73 ---~~~~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 73 ---IIDEIKPTEIYNLAAQ 88 (343)
T ss_pred ---HHHhCCCCEEEECCcc
Confidence 3333458999987653
No 474
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=71.50 E-value=23 Score=30.05 Aligned_cols=91 Identities=16% Similarity=0.077 Sum_probs=48.0
Q ss_pred cCCCCeeEeecCCC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--CCC--CCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 59 LRPGLKVLDCGAAP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--YPI--DGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 59 ~~~g~~VLDlGcGp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~~~--~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+.++.+||-+|||. |..+..+++..+ .+|++++.++- ..+ .++..+ ..+ .+... ... .
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G----------~~v~~~~~~~~~~~~~~~~g~~~~-~~~-~~~~~---~~~-~- 222 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMG----------FETVAITRSPDKRELARKLGADEV-VDS-GAELD---EQA-A- 222 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC----------CEEEEEeCCHHHHHHHHHhCCcEE-ecc-CCcch---HHh-c-
Confidence 56788999998764 444444455433 47888877651 001 122111 111 11111 111 1
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEe
Q psy1489 134 DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183 (229)
Q Consensus 134 ~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~ 183 (229)
.+.+|+|+.-... ...+..+.+.|+++|+++.-
T Consensus 223 ~~~~d~vi~~~~~-----------------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 223 AGGADVILVTVVS-----------------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred cCCCCEEEECCCc-----------------HHHHHHHHHhcccCCEEEEE
Confidence 2469999873210 12345577889999998853
No 475
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=71.44 E-value=33 Score=28.75 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=50.9
Q ss_pred cCCCCeeEeecCCC--CchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--CC--CCCeEEecCCCCChhHHHHHHHHh
Q psy1489 59 LRPGLKVLDCGAAP--GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--PI--DGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 59 ~~~g~~VLDlGcGp--G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~~--~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
+.+|.+||=.|++. |..+..+++..+ .+++.+..++.. .+ -++..+ -+..+......+....
T Consensus 136 ~~~~~~vlI~g~~~~vg~~~~~~a~~~g----------~~v~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~ 203 (323)
T cd05282 136 LPPGDWVIQNAANSAVGRMLIQLAKLLG----------FKTINVVRRDEQVEELKALGADEV--IDSSPEDLAQRVKEAT 203 (323)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCC----------CeEEEEecChHHHHHHHhcCCCEE--ecccchhHHHHHHHHh
Confidence 46788999888732 445555566543 467776655410 00 122111 1222233344455555
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEE
Q psy1489 133 KDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLI 182 (229)
Q Consensus 133 ~~~~~D~V~sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~ 182 (229)
.+..+|+|+.... . . ....+.+.|+++|+++.
T Consensus 204 ~~~~~d~vl~~~g-----~----~---------~~~~~~~~l~~~g~~v~ 235 (323)
T cd05282 204 GGAGARLALDAVG-----G----E---------SATRLARSLRPGGTLVN 235 (323)
T ss_pred cCCCceEEEECCC-----C----H---------HHHHHHHhhCCCCEEEE
Confidence 5667999997321 1 1 12245678899999874
No 476
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.72 E-value=68 Score=28.82 Aligned_cols=76 Identities=22% Similarity=0.293 Sum_probs=46.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC-CC------CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-YP------IDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~-~~------~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
++.++|-.|+ +|+++..+++.+.. ...+|+.+|.... .. --+..++ ..|+++.+....+.+.+.
T Consensus 209 ~g~~vlItGa-sggIG~~la~~l~~-------~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~-~~Dv~~~~~~~~~~~~~~ 279 (450)
T PRK08261 209 AGKVALVTGA-ARGIGAAIAEVLAR-------DGAHVVCLDVPAAGEALAAVANRVGGTAL-ALDITAPDAPARIAEHLA 279 (450)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHH-------CCCEEEEEeCCccHHHHHHHHHHcCCeEE-EEeCCCHHHHHHHHHHHH
Confidence 4678888886 46677777776542 2358888887431 00 0134566 789998765544433322
Q ss_pred --CCCccEEEeCCC
Q psy1489 134 --DDKLDVVLSDMA 145 (229)
Q Consensus 134 --~~~~D~V~sd~~ 145 (229)
.+..|+|+.+..
T Consensus 280 ~~~g~id~vi~~AG 293 (450)
T PRK08261 280 ERHGGLDIVVHNAG 293 (450)
T ss_pred HhCCCCCEEEECCC
Confidence 136899998765
No 477
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=69.94 E-value=1e+02 Score=29.36 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=48.8
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC----C---C---CCCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP----I---Y---PIDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~----~---~---~~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
++++||-.| |+|.++.++++.+...+ ...+|+++|... . . ..+++.++ .+|+.+......+
T Consensus 5 ~~~~VLVTG-atGfIG~~lv~~Ll~~g-----~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~-~~Dl~d~~~~~~~-- 75 (668)
T PLN02260 5 EPKNILITG-AAGFIASHVANRLIRNY-----PDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFV-KGDIASADLVNYL-- 75 (668)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHhC-----CCCEEEEEeCCCccchhhhhhhcccCCCeEEE-ECCCCChHHHHHH--
Confidence 357888877 45888888887764110 235899998642 0 1 12467888 8999987543322
Q ss_pred HhCCCCccEEEeCCCC
Q psy1489 131 ILKDDKLDVVLSDMAP 146 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~~ 146 (229)
+....+|+|+.-++.
T Consensus 76 -~~~~~~D~ViHlAa~ 90 (668)
T PLN02260 76 -LITEGIDTIMHFAAQ 90 (668)
T ss_pred -HhhcCCCEEEECCCc
Confidence 334579999976543
No 478
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=69.93 E-value=56 Score=26.27 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=48.0
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-------C-CCCeEEecCCCCChhHHHHHHHHh
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-------I-DGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-------~-~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
.+.+||=.|++ |+++..+++.+.. ...+|+.++.++... . ..+.++ ..|+++.+....+.+..
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~-------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~ 74 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAE-------AGADIVGAGRSEPSETQQQVEALGRRFLSL-TADLSDIEAIKALVDSA 74 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-------CCCEEEEEcCchHHHHHHHHHhcCCceEEE-ECCCCCHHHHHHHHHHH
Confidence 46788888885 5677777776642 224888888754111 1 246677 89999876544332221
Q ss_pred C--CCCccEEEeCCCC
Q psy1489 133 K--DDKLDVVLSDMAP 146 (229)
Q Consensus 133 ~--~~~~D~V~sd~~~ 146 (229)
. -+..|.++.++..
T Consensus 75 ~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 75 VEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1 1468999987653
No 479
>PRK06198 short chain dehydrogenase; Provisional
Probab=69.81 E-value=50 Score=26.82 Aligned_cols=77 Identities=13% Similarity=0.128 Sum_probs=46.5
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcE-EEEEeCCCC--C-------C-CCCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGL-VLSVDKLPI--Y-------P-IDGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~-v~gvD~~~~--~-------~-~~~~~~~~~~D~~~~~~~~~i~ 129 (229)
++.+||-.|+ +|+++..+++.+.. ...+ |+.++.++- . . -..+.++ ..|+++.+....+.
T Consensus 5 ~~k~vlItGa-~g~iG~~la~~l~~-------~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~ 75 (260)
T PRK06198 5 DGKVALVTGG-TQGLGAAIARAFAE-------RGAAGLVICGRNAEKGEAQAAELEALGAKAVFV-QADLSDVEDCRRVV 75 (260)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHH-------CCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEE-EccCCCHHHHHHHH
Confidence 4577888885 56688877776642 2235 888887641 1 0 1135567 88999876544333
Q ss_pred HHhC--CCCccEEEeCCCC
Q psy1489 130 TILK--DDKLDVVLSDMAP 146 (229)
Q Consensus 130 ~~~~--~~~~D~V~sd~~~ 146 (229)
+... -+.+|.|+..+..
T Consensus 76 ~~~~~~~g~id~li~~ag~ 94 (260)
T PRK06198 76 AAADEAFGRLDALVNAAGL 94 (260)
T ss_pred HHHHHHhCCCCEEEECCCc
Confidence 2211 1368999987653
No 480
>PRK06138 short chain dehydrogenase; Provisional
Probab=69.42 E-value=58 Score=26.20 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=47.5
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC---CCCeEEecCCCCChhHHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI---DGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~---~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
++.++|=.||+ |+++..+++.+.. ...+|+.++.++- . .+ ..+.++ .+|+.+......+.+.
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~-------~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~ 74 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAR-------EGARVVVADRDAEAAERVAAAIAAGGRAFAR-QGDVGSAEAVEALVDF 74 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHH-------CCCeEEEecCCHHHHHHHHHHHhcCCeEEEE-EcCCCCHHHHHHHHHH
Confidence 35678888874 7777777776542 2358888876641 0 01 235677 8999997654433222
Q ss_pred hC--CCCccEEEeCCCC
Q psy1489 132 LK--DDKLDVVLSDMAP 146 (229)
Q Consensus 132 ~~--~~~~D~V~sd~~~ 146 (229)
+. -+.+|.|+.....
T Consensus 75 i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 75 VAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 11 1478999987753
No 481
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=69.41 E-value=60 Score=26.36 Aligned_cols=75 Identities=12% Similarity=-0.024 Sum_probs=46.5
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC------CCCeEEecCCCCChhHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI------DGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~------~~~~~~~~~D~~~~~~~~~i~ 129 (229)
+++||-.| |+|+++..+++.+.. ....|+.+|.++- . .+ ..+.++ ..|+++.+....+.
T Consensus 2 ~k~ilItG-~~~~IG~~la~~l~~-------~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~i~~~~ 72 (259)
T PRK12384 2 NQVAVVIG-GGQTLGAFLCHGLAE-------EGYRVAVADINSEKAANVAQEINAEYGEGMAYGF-GADATSEQSVLALS 72 (259)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHH-------CCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEE-EccCCCHHHHHHHH
Confidence 35688888 457777777776642 2358889987641 0 00 246777 89999875443332
Q ss_pred HHhC--CCCccEEEeCCC
Q psy1489 130 TILK--DDKLDVVLSDMA 145 (229)
Q Consensus 130 ~~~~--~~~~D~V~sd~~ 145 (229)
+.+. -+..|.|+..+.
T Consensus 73 ~~~~~~~~~id~vv~~ag 90 (259)
T PRK12384 73 RGVDEIFGRVDLLVYNAG 90 (259)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 2211 146899998775
No 482
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.03 E-value=58 Score=26.07 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=48.2
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C-------C-CCCCeEEecCCCCChhHHHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y-------P-IDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~-------~-~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
+.++|-.|+ +|+++..+++++.. ...+|+.++.++- . . -..+.++ ..|+.++.....+.+.
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~-------~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAK-------EGVNVGLLARTEENLKAVAEEVEAYGVKVVIA-TADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEE-ECCCCCHHHHHHHHHH
Confidence 567888884 78888888876532 2358888887641 0 0 1246677 8999987654333222
Q ss_pred hC--CCCccEEEeCCCC
Q psy1489 132 LK--DDKLDVVLSDMAP 146 (229)
Q Consensus 132 ~~--~~~~D~V~sd~~~ 146 (229)
.. -+..|+|+.....
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 78 LKNELGSIDILINNAGI 94 (239)
T ss_pred HHHHcCCccEEEEcCcc
Confidence 11 1468999987754
No 483
>KOG1227|consensus
Probab=68.89 E-value=1.5 Score=37.70 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=28.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
.|..|+||=+|-|.|+....-+. ++..|+|+|.+|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a---------gAk~V~A~EwNp 228 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA---------GAKTVFACEWNP 228 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc---------CccEEEEEecCH
Confidence 57899999999999998443333 457999999998
No 484
>PLN02427 UDP-apiose/xylose synthase
Probab=68.65 E-value=81 Score=27.61 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=45.9
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C---C------CCCCeEEecCCCCChhHHHHHHH
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y---P------IDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~---~------~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
.++||-.| |+|.++.++++.+-.. ...+|+++|.++. . . .++++++ .+|+.+..... .
T Consensus 14 ~~~VlVTG-gtGfIGs~lv~~L~~~------~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~-~~Dl~d~~~l~---~ 82 (386)
T PLN02427 14 PLTICMIG-AGGFIGSHLCEKLMTE------TPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFH-RINIKHDSRLE---G 82 (386)
T ss_pred CcEEEEEC-CcchHHHHHHHHHHhc------CCCEEEEEecCchhhhhhhccccccCCCCeEEE-EcCCCChHHHH---H
Confidence 46788666 6888888888877410 1247999996541 0 0 1357888 89999865433 3
Q ss_pred HhCCCCccEEEeCCC
Q psy1489 131 ILKDDKLDVVLSDMA 145 (229)
Q Consensus 131 ~~~~~~~D~V~sd~~ 145 (229)
.+. .+|+|+.-++
T Consensus 83 ~~~--~~d~ViHlAa 95 (386)
T PLN02427 83 LIK--MADLTINLAA 95 (386)
T ss_pred Hhh--cCCEEEEccc
Confidence 332 4899987554
No 485
>PRK08219 short chain dehydrogenase; Provisional
Probab=68.52 E-value=56 Score=25.72 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=47.3
Q ss_pred CeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------CCCCCeEEecCCCCChhHHHHHHHHhCCCC
Q psy1489 63 LKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------PIDGAVVLSKCDFTQPDIQDRLVTILKDDK 136 (229)
Q Consensus 63 ~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~ 136 (229)
+++|-.|+ +|+.+..+++.+.. . .+|++++.++-. ..++++++ .+|+.+......+...+ +.
T Consensus 4 ~~vlVtG~-~g~iG~~l~~~l~~-------~-~~V~~~~r~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~--~~ 71 (227)
T PRK08219 4 PTALITGA-SRGIGAAIARELAP-------T-HTLLLGGRPAERLDELAAELPGATPF-PVDLTDPEAIAAAVEQL--GR 71 (227)
T ss_pred CEEEEecC-CcHHHHHHHHHHHh-------h-CCEEEEeCCHHHHHHHHHHhccceEE-ecCCCCHHHHHHHHHhc--CC
Confidence 46787777 47777777776641 3 689999877411 12357788 99999976544433322 26
Q ss_pred ccEEEeCCCC
Q psy1489 137 LDVVLSDMAP 146 (229)
Q Consensus 137 ~D~V~sd~~~ 146 (229)
.|.|+.....
T Consensus 72 id~vi~~ag~ 81 (227)
T PRK08219 72 LDVLVHNAGV 81 (227)
T ss_pred CCEEEECCCc
Confidence 8999986643
No 486
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=68.40 E-value=38 Score=29.34 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=51.2
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC---CCCCC--CeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI---YPIDG--AVVLSKCDFTQPDIQDRLVTILKDDKLD 138 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~---~~~~~--~~~~~~~D~~~~~~~~~i~~~~~~~~~D 138 (229)
+||-. -|.|.++.+.+..+.. ....|+.+|-..- ..+.. +.+. ++|+.|.... .+.+...++|
T Consensus 2 ~iLVt-GGAGYIGSHtv~~Ll~-------~G~~vvV~DNL~~g~~~~v~~~~~~f~-~gDi~D~~~L---~~vf~~~~id 69 (329)
T COG1087 2 KVLVT-GGAGYIGSHTVRQLLK-------TGHEVVVLDNLSNGHKIALLKLQFKFY-EGDLLDRALL---TAVFEENKID 69 (329)
T ss_pred eEEEe-cCcchhHHHHHHHHHH-------CCCeEEEEecCCCCCHHHhhhccCceE-EeccccHHHH---HHHHHhcCCC
Confidence 34543 3778888777765541 2347888886541 12333 5788 9999996544 4456678999
Q ss_pred EEEeCCCCCCCCCCcccHH
Q psy1489 139 VVLSDMAPNATGMREMDHD 157 (229)
Q Consensus 139 ~V~sd~~~~~~g~~~~d~~ 157 (229)
.|+.=++...-|.+..++.
T Consensus 70 aViHFAa~~~VgESv~~Pl 88 (329)
T COG1087 70 AVVHFAASISVGESVQNPL 88 (329)
T ss_pred EEEECccccccchhhhCHH
Confidence 9997665444454444443
No 487
>PRK05650 short chain dehydrogenase; Provisional
Probab=68.35 E-value=66 Score=26.42 Aligned_cols=74 Identities=12% Similarity=0.053 Sum_probs=45.1
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC---------C-CCCCeEEecCCCCChhHHHHHHHHhC
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY---------P-IDGAVVLSKCDFTQPDIQDRLVTILK 133 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~---------~-~~~~~~~~~~D~~~~~~~~~i~~~~~ 133 (229)
+||-.|+ +|+++..+++.+.. ...+|+.++.++-. . -..+.++ .+|+.+......+...+.
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~-------~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~-~~D~~~~~~~~~~~~~i~ 72 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAR-------EGWRLALADVNEEGGEETLKLLREAGGDGFYQ-RCDVRDYSQLTALAQACE 72 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEE-EccCCCHHHHHHHHHHHH
Confidence 5666664 66777777776642 23478888876410 0 1246677 899998765443332221
Q ss_pred --CCCccEEEeCCCC
Q psy1489 134 --DDKLDVVLSDMAP 146 (229)
Q Consensus 134 --~~~~D~V~sd~~~ 146 (229)
-+.+|.|+.+...
T Consensus 73 ~~~~~id~lI~~ag~ 87 (270)
T PRK05650 73 EKWGGIDVIVNNAGV 87 (270)
T ss_pred HHcCCCCEEEECCCC
Confidence 1468999998754
No 488
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.31 E-value=34 Score=27.48 Aligned_cols=76 Identities=5% Similarity=0.063 Sum_probs=47.4
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC-------C-CCCCeEEecCCCCChhHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY-------P-IDGAVVLSKCDFTQPDIQDRLVT 130 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~-------~-~~~~~~~~~~D~~~~~~~~~i~~ 130 (229)
++.++|-.|+ .|+++..+++.+.. ...+|+.+|.++ .. . -..+.++ +.|+.+.+....+.+
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~-------~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~ 74 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQ-------KGAKLALIDLNQEKLEEAVAECGALGTEVRGY-AANVTDEEDVEATFA 74 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEE-EcCCCCHHHHHHHHH
Confidence 3678898886 56677777766542 224788888775 11 0 1245677 899988765444333
Q ss_pred HhCC--CCccEEEeCCC
Q psy1489 131 ILKD--DKLDVVLSDMA 145 (229)
Q Consensus 131 ~~~~--~~~D~V~sd~~ 145 (229)
.+.. +.+|.|+.+..
T Consensus 75 ~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 75 QIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 2211 46899998764
No 489
>PRK06701 short chain dehydrogenase; Provisional
Probab=68.25 E-value=71 Score=26.81 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=45.0
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCCC-------C----CCCeEEecCCCCChhHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP-------I----DGAVVLSKCDFTQPDIQDRLV 129 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~~-------~----~~~~~~~~~D~~~~~~~~~i~ 129 (229)
++.++|-.|+ +|+++..+++++.. ...+|+.++.++... + ..+.++ ..|+.+.+....+.
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~-------~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~ 115 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAK-------EGADIAIVYLDEHEDANETKQRVEKEGVKCLLI-PGDVSDEAFCKDAV 115 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHH-------CCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEE-EccCCCHHHHHHHH
Confidence 3578888885 56666666766542 235787877654110 0 135677 89999876544332
Q ss_pred HHh-C-CCCccEEEeCCC
Q psy1489 130 TIL-K-DDKLDVVLSDMA 145 (229)
Q Consensus 130 ~~~-~-~~~~D~V~sd~~ 145 (229)
... . -..+|+|+.++.
T Consensus 116 ~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 116 EETVRELGRLDILVNNAA 133 (290)
T ss_pred HHHHHHcCCCCEEEECCc
Confidence 211 1 136899998764
No 490
>PRK10537 voltage-gated potassium channel; Provisional
Probab=67.68 E-value=52 Score=29.50 Aligned_cols=95 Identities=11% Similarity=0.030 Sum_probs=54.2
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC--CCCCCeEEecCCCCChhHHHHHHHHhCCCCccEEE
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY--PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVL 141 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~--~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D~V~ 141 (229)
.|+= ||.|..+..+++.+.. ....++.+|.+... ..++..++ .+|.++.+...+ ..-+..+.|+
T Consensus 242 HvII--~G~g~lg~~v~~~L~~-------~g~~vvVId~d~~~~~~~~g~~vI-~GD~td~e~L~~----AgI~~A~aVI 307 (393)
T PRK10537 242 HFII--CGHSPLAINTYLGLRQ-------RGQAVTVIVPLGLEHRLPDDADLI-PGDSSDSAVLKK----AGAARARAIL 307 (393)
T ss_pred eEEE--ECCChHHHHHHHHHHH-------CCCCEEEEECchhhhhccCCCcEE-EeCCCCHHHHHh----cCcccCCEEE
Confidence 4554 4555666777765531 12357777765421 22467788 999998765432 2224678888
Q ss_pred eCCCCCCCCCCcccHHHHHHHHHHHHHHHHHcccCCCEEEEeecC
Q psy1489 142 SDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWD 186 (229)
Q Consensus 142 sd~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~~v~~~~~ 186 (229)
+.... |. .. ..+..+.+-+.|+..++..+.+
T Consensus 308 ~~t~d--------D~-~N-----l~ivL~ar~l~p~~kIIa~v~~ 338 (393)
T PRK10537 308 ALRDN--------DA-DN-----AFVVLAAKEMSSDVKTVAAVND 338 (393)
T ss_pred EcCCC--------hH-HH-----HHHHHHHHHhCCCCcEEEEECC
Confidence 73321 11 11 1233456778898888876654
No 491
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=67.46 E-value=46 Score=29.37 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=23.1
Q ss_pred cCCCCeeEeecC-CC-CchHHHHHHHHhccCCCCCCCCcEEEEEeCCC
Q psy1489 59 LRPGLKVLDCGA-AP-GSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104 (229)
Q Consensus 59 ~~~g~~VLDlGc-Gp-G~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~ 104 (229)
+.+|.+||-.|+ |+ |..+..+++..| .+++.++.++
T Consensus 187 ~~~g~~vlV~Ga~g~vG~~ai~~ak~~G----------~~vi~~~~~~ 224 (398)
T TIGR01751 187 VKPGDNVLIWGAAGGLGSYATQLARAGG----------GNPVAVVSSP 224 (398)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcC----------CeEEEEcCCH
Confidence 457899999998 33 445555565543 4677776553
No 492
>PRK05884 short chain dehydrogenase; Provisional
Probab=67.22 E-value=64 Score=25.85 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=43.4
Q ss_pred eeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCC--CC---CCCCCeEEecCCCCChhHHHHHHHHhCCCCcc
Q psy1489 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP--IY---PIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138 (229)
Q Consensus 64 ~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~--~~---~~~~~~~~~~~D~~~~~~~~~i~~~~~~~~~D 138 (229)
++|=.|++. +++..+++.+.. ...+|+.++.++ .. ...++.++ +.|+.+.+....+.+.+. +.+|
T Consensus 2 ~vlItGas~-giG~~ia~~l~~-------~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~~~~~~~-~~id 71 (223)
T PRK05884 2 EVLVTGGDT-DLGRTIAEGFRN-------DGHKVTLVGARRDDLEVAAKELDVDAI-VCDNTDPASLEEARGLFP-HHLD 71 (223)
T ss_pred eEEEEeCCc-hHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHhccCcEE-ecCCCCHHHHHHHHHHHh-hcCc
Confidence 466666654 566666766531 235888888764 11 11145677 899998765544433332 3689
Q ss_pred EEEeCCC
Q psy1489 139 VVLSDMA 145 (229)
Q Consensus 139 ~V~sd~~ 145 (229)
+++.+..
T Consensus 72 ~lv~~ag 78 (223)
T PRK05884 72 TIVNVPA 78 (223)
T ss_pred EEEECCC
Confidence 9998754
No 493
>PRK05717 oxidoreductase; Validated
Probab=66.96 E-value=68 Score=26.05 Aligned_cols=77 Identities=17% Similarity=0.075 Sum_probs=47.9
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CC-CCCeEEecCCCCChhHHHHH-HHHh
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PI-DGAVVLSKCDFTQPDIQDRL-VTIL 132 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~-~~~~~~~~~D~~~~~~~~~i-~~~~ 132 (229)
.|.+||-.|.+ |+++..+++.+.. ...+|+.+|.++. . .. ..+.++ ..|+++.+....+ .+..
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~-------~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIA-------EGWQVVLADLDRERGSKVAKALGENAWFI-AMDVADEAQVAAGVAEVL 79 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHH-------cCCEEEEEcCCHHHHHHHHHHcCCceEEE-EccCCCHHHHHHHHHHHH
Confidence 46788877764 7777777776642 2358888887641 0 11 246678 8999997644332 2221
Q ss_pred C-CCCccEEEeCCCC
Q psy1489 133 K-DDKLDVVLSDMAP 146 (229)
Q Consensus 133 ~-~~~~D~V~sd~~~ 146 (229)
. -+.+|+++.++..
T Consensus 80 ~~~g~id~li~~ag~ 94 (255)
T PRK05717 80 GQFGRLDALVCNAAI 94 (255)
T ss_pred HHhCCCCEEEECCCc
Confidence 1 1368999987753
No 494
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=66.92 E-value=16 Score=30.33 Aligned_cols=41 Identities=15% Similarity=0.275 Sum_probs=27.4
Q ss_pred CCeeEeecCCCCchHHHHHHHHhccCCCCC-CCCcEEEEEeCCC
Q psy1489 62 GLKVLDCGAAPGSWSQVAVKLVNSHGYDSK-QPKGLVLSVDKLP 104 (229)
Q Consensus 62 g~~VLDlGcGpG~~s~~la~~~~~~~~~~~-~~~~~v~gvD~~~ 104 (229)
.-+|+++|+|.|.++.-++..+.... |+ -...+++-||.|+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~--p~~~~~~~y~ivE~Sp 60 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFS--PEVYKRLRYHIVEISP 60 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTT--HHHHTTCEEEEE-TTC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhC--hhhhhcceEEEEcCCH
Confidence 36999999999999999888774110 00 0124789999997
No 495
>PLN02253 xanthoxin dehydrogenase
Probab=66.05 E-value=75 Score=26.21 Aligned_cols=77 Identities=21% Similarity=0.186 Sum_probs=48.2
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC------C---CCCCCeEEecCCCCChhHHHHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI------Y---PIDGAVVLSKCDFTQPDIQDRLVTI 131 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~------~---~~~~~~~~~~~D~~~~~~~~~i~~~ 131 (229)
.++++|-.| |+|+++..+++.+.. ...+|+.+|.++- . .-.++.++ +.|+.+.+....+...
T Consensus 17 ~~k~~lItG-as~gIG~~la~~l~~-------~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~ 87 (280)
T PLN02253 17 LGKVALVTG-GATGIGESIVRLFHK-------HGAKVCIVDLQDDLGQNVCDSLGGEPNVCFF-HCDVTVEDDVSRAVDF 87 (280)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH-------cCCEEEEEeCCHHHHHHHHHHhcCCCceEEE-EeecCCHHHHHHHHHH
Confidence 367888888 457778877776642 2358888887641 0 11246778 8999997654433221
Q ss_pred hC--CCCccEEEeCCCC
Q psy1489 132 LK--DDKLDVVLSDMAP 146 (229)
Q Consensus 132 ~~--~~~~D~V~sd~~~ 146 (229)
+. -+..|+++.++..
T Consensus 88 ~~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 88 TVDKFGTLDIMVNNAGL 104 (280)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 11 1468999987753
No 496
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=65.91 E-value=4.8 Score=35.15 Aligned_cols=117 Identities=12% Similarity=0.118 Sum_probs=55.8
Q ss_pred CCCCeeEeecCCCCchHHHHHHHHhc------cCCC-CCCCCcEEEEEeCCCCC------CC----------CC--CeEE
Q psy1489 60 RPGLKVLDCGAAPGSWSQVAVKLVNS------HGYD-SKQPKGLVLSVDKLPIY------PI----------DG--AVVL 114 (229)
Q Consensus 60 ~~g~~VLDlGcGpG~~s~~la~~~~~------~~~~-~~~~~~~v~gvD~~~~~------~~----------~~--~~~~ 114 (229)
+..-+|+|+||..|..+..+....-. .... ...|.-+|+-.|+=.-+ .+ +. +..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 34579999999999988776543311 0000 11233467777763210 00 11 1122
Q ss_pred ecCCCCChhHHHHHHHHhCCCCccEEEeCCCCCC-----CCCCc-------------c---cHH-------HHHHHHHHH
Q psy1489 115 SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNA-----TGMRE-------------M---DHD-------LITQLAIAV 166 (229)
Q Consensus 115 ~~~D~~~~~~~~~i~~~~~~~~~D~V~sd~~~~~-----~g~~~-------------~---d~~-------~~~~~~~~~ 166 (229)
.+.+.+ ..+|+++.|+++|..+..+ .++.+ . ... .........
T Consensus 95 -pgSFy~--------rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~F 165 (334)
T PF03492_consen 95 -PGSFYG--------RLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSF 165 (334)
T ss_dssp -ES-TTS----------S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHH
T ss_pred -Cchhhh--------ccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 444444 3478899999999765311 11111 0 011 111223355
Q ss_pred HHHHHHcccCCCEEEEeec
Q psy1489 167 IRFAVTYSKPGADCLIKIW 185 (229)
Q Consensus 167 l~~~~~~LkpgG~~v~~~~ 185 (229)
|..=.+-|+|||.|++..+
T Consensus 166 L~~Ra~ELv~GG~mvl~~~ 184 (334)
T PF03492_consen 166 LKARAEELVPGGRMVLTFL 184 (334)
T ss_dssp HHHHHHHEEEEEEEEEEEE
T ss_pred HHHhhheeccCcEEEEEEe
Confidence 5555667999999998764
No 497
>PRK12829 short chain dehydrogenase; Provisional
Probab=65.84 E-value=23 Score=28.78 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=49.0
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCC--C----CCC--CCeEEecCCCCChhHHHHHHHHh
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI--Y----PID--GAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~--~----~~~--~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
++.++|-.|++ |+++..+++++-. ...+|++++.++- . ..+ .+.++ ..|+.++.....+.+..
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~-------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAE-------AGARVHVCDVSEAALAATAARLPGAKVTAT-VADVADPAQVERVFDTA 80 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHH-------CCCEEEEEeCCHHHHHHHHHHHhcCceEEE-EccCCCHHHHHHHHHHH
Confidence 56889988875 7788887776642 2357889987641 0 112 34677 89999876543332211
Q ss_pred C--CCCccEEEeCCCC
Q psy1489 133 K--DDKLDVVLSDMAP 146 (229)
Q Consensus 133 ~--~~~~D~V~sd~~~ 146 (229)
. -..+|.|+.....
T Consensus 81 ~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 81 VERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1 1469999987754
No 498
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=65.76 E-value=4.4 Score=35.04 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcccCCCEEEEeecCCCC
Q psy1489 161 QLAIAVIRFAVTYSKPGADCLIKIWDGRN 189 (229)
Q Consensus 161 ~~~~~~l~~~~~~LkpgG~~v~~~~~~~~ 189 (229)
..+...|..+..+|+|||++++-.|+.-+
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLE 246 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLE 246 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchh
Confidence 34557888999999999999998887544
No 499
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=65.61 E-value=72 Score=25.91 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=46.7
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC-------CC-CCCeEEecCCCCChhHHHHHHHHh
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY-------PI-DGAVVLSKCDFTQPDIQDRLVTIL 132 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~-------~~-~~~~~~~~~D~~~~~~~~~i~~~~ 132 (229)
.|..+|-.|+ +|+++..+++.+.. ...+|+++|..+.. .. ..+..+ +.|+.+.+....+.+..
T Consensus 9 ~~k~~lItG~-~~gIG~a~a~~l~~-------~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~~~~~~~~~~~~~ 79 (253)
T PRK08993 9 EGKVAVVTGC-DTGLGQGMALGLAE-------AGCDIVGINIVEPTETIEQVTALGRRFLSL-TADLRKIDGIPALLERA 79 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-------CCCEEEEecCcchHHHHHHHHhcCCeEEEE-ECCCCCHHHHHHHHHHH
Confidence 3678888886 56777777776642 23588888876411 11 235667 89999865443332211
Q ss_pred -C-CCCccEEEeCCC
Q psy1489 133 -K-DDKLDVVLSDMA 145 (229)
Q Consensus 133 -~-~~~~D~V~sd~~ 145 (229)
. -+..|+++.++.
T Consensus 80 ~~~~~~~D~li~~Ag 94 (253)
T PRK08993 80 VAEFGHIDILVNNAG 94 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 1 146899998765
No 500
>PRK09186 flagellin modification protein A; Provisional
Probab=65.54 E-value=39 Score=27.34 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=47.0
Q ss_pred CCCeeEeecCCCCchHHHHHHHHhccCCCCCCCCcEEEEEeCCCCC------------CCCCCeEEecCCCCChhHHHHH
Q psy1489 61 PGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIY------------PIDGAVVLSKCDFTQPDIQDRL 128 (229)
Q Consensus 61 ~g~~VLDlGcGpG~~s~~la~~~~~~~~~~~~~~~~v~gvD~~~~~------------~~~~~~~~~~~D~~~~~~~~~i 128 (229)
.+++||=.|++ |+++..+++.+.. ...+|+.++.++-. .-..+.++ .+|+.+.+....+
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~-------~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~Dl~d~~~~~~~ 73 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILE-------AGGIVIAADIDKEALNELLESLGKEFKSKKLSLV-ELDITDQESLEEF 73 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-------CCCEEEEEecChHHHHHHHHHHHhhcCCCceeEE-EecCCCHHHHHHH
Confidence 46788888874 6677777776642 23578888776411 01235567 8899987654433
Q ss_pred HHHhC--CCCccEEEeCCC
Q psy1489 129 VTILK--DDKLDVVLSDMA 145 (229)
Q Consensus 129 ~~~~~--~~~~D~V~sd~~ 145 (229)
.+... -+..|+|+.++.
T Consensus 74 ~~~~~~~~~~id~vi~~A~ 92 (256)
T PRK09186 74 LSKSAEKYGKIDGAVNCAY 92 (256)
T ss_pred HHHHHHHcCCccEEEECCc
Confidence 32211 145899998764
Done!