RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1489
(229 letters)
>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure
and biogenesis].
Length = 205
Score = 215 bits (549), Expect = 4e-71
Identities = 90/212 (42%), Positives = 127/212 (59%), Gaps = 9/212 (4%)
Query: 18 HSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ 77
SS WL DPY +KAKKE YR R+A+KLLE++ K K +PG+ V+D GAAPG WSQ
Sbjct: 2 GSSQRWLAEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQ 61
Query: 78 VAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKL 137
VA K + G +++VD LP+ PI G V+ + D T D ++L+ L +
Sbjct: 62 VAAKKLG--------AGGKIVAVDILPMKPIPG-VIFLQGDITDEDTLEKLLEALGGAPV 112
Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
DVVLSDMAPN +G R +DH L + FA+ KPG + K++ G + L +++
Sbjct: 113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKAL 172
Query: 198 TRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
R + +VKI KP +SR S E++L+ +GFKGK
Sbjct: 173 RRLFRKVKIFKPKASRKRSREIYLVAKGFKGK 204
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 174 bits (444), Expect = 2e-55
Identities = 68/188 (36%), Positives = 105/188 (55%), Gaps = 13/188 (6%)
Query: 41 YRCRSAFKLLEIDSKIKF-LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLS 99
Y R+A+KLLEID + G VLD GAAPG +SQV ++ G V++
Sbjct: 1 YVSRAAYKLLEIDERFGLKPGKGKTVLDLGAAPGGFSQVLLERG---------GAGKVVA 51
Query: 100 VDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLI 159
VD P+ PI G L + D T P+ ++L +L K+D+VLSD APN +G+ D +
Sbjct: 52 VDLGPMEPIQGVYFL-RGDITDPETLEKLRELLPG-KVDLVLSDGAPNVSGIENTDSFIS 109
Query: 160 TQLAIAVIRFAVTYSKPGADCLIKIWDGRN-RPQLEESITRFYSQVKILKPPSSRSHSAE 218
QL +A + A+ +PG + ++K++ G +L E + + + +V I KPP+SR S+E
Sbjct: 110 LQLVLAALLLALEVLRPGGNFVVKVFKGFEFSVELLEKLKKGFEKVGIFKPPASRPSSSE 169
Query: 219 LFLLGRGF 226
+L+ GF
Sbjct: 170 EYLVCLGF 177
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 160 bits (407), Expect = 8e-50
Identities = 76/197 (38%), Positives = 118/197 (59%), Gaps = 9/197 (4%)
Query: 30 DPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD 89
D Y QKAKKE YR R++FKLL+++ K K ++PG VLD GAAPG WSQVAV+ V
Sbjct: 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGG---- 56
Query: 90 SKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNAT 149
KG V++VD P+ PI+ V + DFT ++ +++ + DDK+DVV+SD APN +
Sbjct: 57 ----KGRVIAVDLQPMKPIEN-VDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNIS 111
Query: 150 GMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKP 209
G ++DH L + A KP + ++K++ G + + + + +VK+ KP
Sbjct: 112 GYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKP 171
Query: 210 PSSRSHSAELFLLGRGF 226
+SR SAE++++ + F
Sbjct: 172 QASRKRSAEVYIVAKRF 188
>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional.
Length = 209
Score = 154 bits (391), Expect = 3e-47
Identities = 77/213 (36%), Positives = 117/213 (54%), Gaps = 15/213 (7%)
Query: 19 SSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQV 78
SS WL+ F+D YVQ+A+K+ R R+ FKL EI K +PG+ V+D GAAPG WSQ
Sbjct: 9 SSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQY 68
Query: 79 AVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLD 138
AV + KG V++ D LP+ PI G L + DF + L+ + D K+
Sbjct: 69 AVTQIGD--------KGRVIACDILPMDPIVGVDFL-QGDFRDELVLKALLERVGDSKVQ 119
Query: 139 VVLSDMAPNATGMREMDHD---LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEE 195
VV+SDMAPN +G +D + +LA+ + R + PG ++K++ G +
Sbjct: 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVL---APGGSFVVKVFQGEGFDEYLR 176
Query: 196 SITRFYSQVKILKPPSSRSHSAELFLLGRGFKG 228
I +++VK+ KP SSR+ S E++++ G K
Sbjct: 177 EIRSLFTKVKVRKPDSSRARSREVYIVATGRKL 209
>gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 245
Score = 34.5 bits (80), Expect = 0.024
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 22/124 (17%)
Query: 35 KAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSH------GY 88
K +++ Y R KL + + + G VLD G++ G ++ V ++ H GY
Sbjct: 53 KGEEQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGY 112
Query: 89 DSKQPKGLVLSVDKLPIYPIDGAVVLSKCDF---TQPDIQDRLVTILKDDK---LDVVLS 142
K L D +VL + + T D ++ I+ D L ++L
Sbjct: 113 GQLHWK---LRND-------PRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFISLKLILP 162
Query: 143 DMAP 146
+
Sbjct: 163 ALLL 166
>gnl|CDD|225485 COG2933, COG2933, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 358
Score = 33.6 bits (77), Expect = 0.064
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 44 RSAFKLLEI-------DSKIKFLRPGLKVLDCGAAPGSWSQVAVK 81
RS KL E D K L PG+ +D GA PG W+ VK
Sbjct: 187 RSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVK 231
>gnl|CDD|236971 PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose
methyltransferase; Provisional.
Length = 357
Score = 31.7 bits (73), Expect = 0.25
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 44 RSAFKLLE-------IDSKIKFLRPGLKVLDCGAAPGSWSQVAVK 81
RS KL E D + L PG++ +D GAAPG W+ V+
Sbjct: 187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVR 231
>gnl|CDD|235708 PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated.
Length = 571
Score = 29.8 bits (68), Expect = 1.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 106 YPIDGAVVLSKCDFTQP 122
YPIDG V+L CD T P
Sbjct: 110 YPIDGVVLLGGCDKTTP 126
>gnl|CDD|237272 PRK13017, PRK13017, dihydroxy-acid dehydratase; Provisional.
Length = 596
Score = 29.5 bits (67), Expect = 1.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 106 YPIDGAVVLSKCDFTQP 122
YP+DG V+ + CD T P
Sbjct: 119 YPLDGVVLTTGCDKTTP 135
>gnl|CDD|198426 cd10028, UDG_F2_MUG, G:T/U mismatch specific DNA glcosylase
(MUG). G:T/U mismatch specific DNA glycosylases (MUG)
are classified as Family 2 of Uracil DNA glycosylase
enzymes. MUG catalyzes the removal of thymine or uracil
bases mispaired with guanine through the hydrolysis of
their N-glycosidic bond, generating abasic sites in DNA
to initiate the base excision repair pathway. G:U and
G:T mismatched base pairs arise in DNA either by
mis-incorporation during DNA replication or by
hydrolytic deamination of cytosine and 5-methyl
cytosine, respectively. MUGs are dsDNA specific base
excision repair enzymes. They explicitly recognize the
widowed guanine on the complementary strand rather than
the extrahelical scissile pyrimidine. This allows a
broader specificity so that some MUGs can excise
uracil, thymine or 3, N(4)-ethenocytosine from
mismatches with guanine. MUGs are found in Eubacteria
and Eukarya, where they appear to have complementary
functions of Family 1 UDGs. MUG is an essential enzyme
for maintaining the integrity of genetic information.
Length = 162
Score = 28.6 bits (65), Expect = 1.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 59 LRPGLKVLDCGAAPGSWS 76
L PGL++L G PG S
Sbjct: 5 LAPGLRLLFVGINPGLRS 22
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 28.2 bits (63), Expect = 2.6
Identities = 34/153 (22%), Positives = 57/153 (37%), Gaps = 27/153 (17%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNS----HGYDSKQPKGLVLS---VDKLPIYPIDGA 111
L+ G+KVLD G G + + + + G D + + + KL
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGID-ISEEAIEKAKENAKKLG------- 52
Query: 112 VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAV 171
+F Q DI++ L+D+ DVV+S+ N D D + + I V++
Sbjct: 53 --YENVEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLP----DPDKVLEEIIRVLK--- 103
Query: 172 TYSKPGADCLIKIWDGRNRPQLEESITRFYSQV 204
G + P L E + R Y+ V
Sbjct: 104 ---PGGVLIVSDPVLLSELPALLEDLERLYAGV 133
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 28.4 bits (64), Expect = 2.8
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHG 87
+ ++PG KVLD G +A+ L S G
Sbjct: 45 SLLGIKPGDKVLDVACGTG---DMALLLAKSVG 74
>gnl|CDD|212002 TIGR04279, TIGR04279, TIGR04279 methanogen extracellular domain.
This domain, with length just over 300 amino acids,
occurs in predicted extracellular proteins in a number
of methanogens, in one to three proteins per genome. The
aromatic residue tyrosine, comprising about five percent
of the amino acid composition, is overrepresented among
the most highly conserved columns of the multiple
sequence alignment. The three members of this family in
Methanosarcina barkeri occur all within a six-gene
region.
Length = 316
Score = 28.5 bits (64), Expect = 2.9
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 24/139 (17%)
Query: 45 SAFKLLEIDSKIKF-----LRPGLKV-LDCGAAPGSWSQVAVKLVNSHGY------DSKQ 92
+AF++L+ DSKIK L V + AP L+ Y ++
Sbjct: 162 TAFEVLDYDSKIKAPSIIDNGKNLDVDISLENAPDDDYTYGAILIKESAYRADIRMETNG 221
Query: 93 PK-GLVLSVDKLPIYPIDG--AVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPN-- 147
K G +SV+++P+ IDG ++K + + D+++++ T++ +D + + + N
Sbjct: 222 TKDGTNVSVNEIPL--IDGFDLNGINKSNLNKSDVKNKIQTLIGEDNGTIAIGTVEGNQA 279
Query: 148 -----ATGMREMDHDLITQ 161
T + E D+ L+T
Sbjct: 280 TLSLTTTDLPEGDYILLTG 298
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 28.4 bits (63), Expect = 3.1
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 106 YPIDGAVVLSKCDFTQPDIQDRLVTI------LKDDKLDVVLSDMAPNATGMREM 154
YP +++ K FT P DR + L K DVV S +APN M EM
Sbjct: 27 YPNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVV-SVLAPNTPAMYEM 80
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 28.7 bits (65), Expect = 3.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 12/44 (27%)
Query: 102 KLPIYPIDGAVVLSKC---DF---TQPDIQDRLVTILKDDKLDV 139
K+P A +LS+C DF + DI +RL IL + ++
Sbjct: 161 KIP------ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY 198
>gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the
phosphorylation of pantothenic acid to form
4'-phosphopantothenic, which is the first of five steps
in coenzyme A (CoA) biosynthetic pathway. The reaction
carried out by this enzyme is a key regulatory point in
CoA biosynthesis.
Length = 220
Score = 28.0 bits (63), Expect = 3.3
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 183 KIWDGRNRPQLEESI--TRFYSQVKILKPPSSRSHSAELFLL 222
++W N L E+I TR + + + K HS E L
Sbjct: 182 EVWKNINLKNLRENILPTRNRADLILEK---GADHSIEEVYL 220
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 28.1 bits (62), Expect = 4.3
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 141 LSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRF 200
+SD P TG+ H+ I + + A++ Y P D IK+W R Q+E+ + F
Sbjct: 255 ISDYLPMLTGLDLNGHEKIMRESSAIMD---KYHDPIIDERIKMWREGKRTQIEDFLDIF 311
Query: 201 YS 202
S
Sbjct: 312 IS 313
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 27.9 bits (63), Expect = 4.7
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 91 KQPKGLVLSVDKLPIYP-------IDGAVVLSKCDFTQPDI 124
P L+L+ LP+ GA VL PD+
Sbjct: 511 DGPTALILTRQNLPVLERTDLEGVAKGAYVLKDSGGEDPDV 551
>gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This
subfamily consists of uncharacterized hypothetical
bacterial proteins with similarity to Escherichia coli
sugar kinase ygcE , whose functional roles are not yet
clear. Escherichia coli ygcE is recognized by this
model, but is not present in the alignment as it
contains a deletion relative to other members of the
group. These proteins belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 488
Score = 28.0 bits (63), Expect = 5.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPG 62
W K +F VQ+A++ + LL D +K + PG
Sbjct: 308 WFKEEFGQKEVQEAEELG---IAPEALL--DEALKEIPPG 342
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 26.6 bits (59), Expect = 5.7
Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 29/93 (31%)
Query: 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPI-----------YPIDGAV 112
+VLD G G+ + P V VD P+ D
Sbjct: 1 RVLDLGCGTGALALALA----------SGPGARVTGVDISPVALELARKAAAALLADNVE 50
Query: 113 VLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMA 145
VL K D + D+ DV++SD
Sbjct: 51 VL-KGDAEELP-------PEADESFDVIISDPP 75
>gnl|CDD|234157 TIGR03287, methan_mark_16, putative methanogenesis marker 16
metalloprotein. Members of this protein family, to
date, are found in a completed prokaryotic genome if and
only if the species is one of the archaeal methanogens.
The exact function is unknown, but likely is linked to
methanogenesis or a process closely connected to it.
This protein is a predicted to bind FeS clusters, based
on the presence of two copies of the Fer4 domain
(pfam00037), with each copy having four Cys residues
invariant across all members [Energy metabolism,
Methanogenesis].
Length = 391
Score = 27.8 bits (62), Expect = 5.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 50 LEIDSKIKFLRPGLKVLDCGA 70
LE D K++ +RPG +VL GA
Sbjct: 179 LENDPKLETIRPGTRVLLNGA 199
>gnl|CDD|237271 PRK13016, PRK13016, dihydroxy-acid dehydratase; Provisional.
Length = 577
Score = 27.4 bits (61), Expect = 6.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 106 YPIDGAVVLSKCDFTQP 122
+P+DGAV++ CD T P
Sbjct: 114 HPVDGAVLMGGCDKTTP 130
>gnl|CDD|107258 cd01545, PBP1_SalR, Ligand-binding domain of DNA transcription
repressor SalR, a member of the LacI-GalR family of
bacterial transcription regulators. Ligand-binding
domain of DNA transcription repressor SalR, a member of
the LacI-GalR family of bacterial transcription
regulators. The SalR binds to glucose based compound
Salicin which is chemically related to aspirin. The
ligand-binding of SalR is structurally homologous to the
periplasmic sugar-binding domain of ABC-transporters and
both domains contain the type I periplasmic binding
protein-like fold. The LacI-GalR family repressors are
composed of two functional domains: an N-terminal HTH
(helix-turn-helix) domain, which is responsible for the
DNA-binding specificity, and a C-terminal ligand-binding
domain, which is homologous to the type I periplasmic
binding proteins. As also observed in the periplasmic
binding proteins, the C-terminal domain of the bacterial
transcription repressor undergoes a conformational
change upon ligand binding which in turn changes the DNA
binding affinity of the repressor.
Length = 270
Score = 27.1 bits (61), Expect = 7.0
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 112 VVLSKCDFTQPDIQDRLVTILKDDKLD-VVLSDMAPNATGMREMDHDLITQLAIAVIRFA 170
+V+ CD PD+ +R+ +L+ ++D V+L+ P + E+ DL+ + + +R A
Sbjct: 32 LVIEPCDSGSPDLAERVRALLQRSRVDGVILT---PPLSDNPEL-LDLLDEAGVPYVRIA 87
>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional.
Length = 427
Score = 27.5 bits (62), Expect = 7.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 59 LRPGLKVLDCGAAPG 73
+ G +VLD AAPG
Sbjct: 242 PQNGERVLDACAAPG 256
>gnl|CDD|216356 pfam01196, Ribosomal_L17, Ribosomal protein L17.
Length = 97
Score = 25.8 bits (58), Expect = 7.3
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 16/51 (31%)
Query: 2 ISTTGPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKE--NYRCRSAFKLL 50
I TT K KE+ R +A+ + AKK + R R A L
Sbjct: 15 IETTLAKAKEL-------------RPYAEKLITLAKKGDLHAR-RQALSFL 51
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 26.9 bits (60), Expect = 8.5
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 58 FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104
L+PG++VL+ G+ G + ++V GLV+S++ +P
Sbjct: 70 ELKPGMRVLEIGSGSGYLTACFARMV--------GEVGLVVSIEHIP 108
>gnl|CDD|200027 TIGR00554, panK_bact, pantothenate kinase, bacterial type. Shown
to be a homodimer in E. coli. This enzyme catalyzes the
rate-limiting step in the biosynthesis of coenzyme A. It
is very well conserved from E. coli to B. subtilis, but
differs considerably from known eukaryotic forms,
described in a separate model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pantothenate
and coenzyme A].
Length = 290
Score = 27.1 bits (60), Expect = 8.8
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 183 KIWDGRNRPQLEESI--TRFYSQVKILKPPSSRSHSAELFLLGR 224
IW N L+++I TR + + IL +H+ E L +
Sbjct: 250 TIWKEINWLNLKQNILPTRERASL-ILT--KGANHAVEEVRLRK 290
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,517,124
Number of extensions: 1065329
Number of successful extensions: 926
Number of sequences better than 10.0: 1
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 35
Length of query: 229
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 135
Effective length of database: 6,768,326
Effective search space: 913724010
Effective search space used: 913724010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)