RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1489
(229 letters)
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 253 bits (649), Expect = 2e-86
Identities = 86/190 (45%), Positives = 122/190 (64%)
Query: 40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLS 99
+YR RSAFKLLE++ + + LRPGL+VLDCGAAPG+WSQVAV+ VN+ G D P G VL
Sbjct: 1 SYRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLG 60
Query: 100 VDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLI 159
VD L I+P++GA L D T P R++ +L + DV+LSDMAPNATG R++DHD +
Sbjct: 61 VDLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRL 120
Query: 160 TQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAEL 219
L + ++ +PG L K W G +L+ +T + V+I+KP +SR S+E+
Sbjct: 121 ISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEV 180
Query: 220 FLLGRGFKGK 229
+ L + G+
Sbjct: 181 YFLATQYHGR 190
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 228 bits (585), Expect = 6e-77
Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 9/187 (4%)
Query: 41 YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSV 100
R R+ FKL EI K +PG+ V+D GAAPG WSQ V + KG +++
Sbjct: 2 LRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIG--------GKGRIIAC 53
Query: 101 DKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLIT 160
D LP+ PI G L + DF + L+ + D K+ VV+SDMAPN +G +D
Sbjct: 54 DLLPMDPIVGVDFL-QGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 112
Query: 161 QLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELF 220
L + PG ++K++ G + I +++VK+ KP SSR+ S E++
Sbjct: 113 YLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVY 172
Query: 221 LLGRGFK 227
++ G K
Sbjct: 173 IVATGRK 179
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 224 bits (574), Expect = 5e-75
Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 25/207 (12%)
Query: 40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLS 99
NYR R+A+KL+E+D+K FL+ +LD G PGSW QV ++ + K ++
Sbjct: 1 NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKN-------YKNKIIG 53
Query: 100 VDKLPIYPIDGAVVLSKCDFTQPDIQD-----------------RLVTILKDDKLDVVLS 142
+DK + PI + + + + ++ + +L IL+D K+D++LS
Sbjct: 54 IDKKIMDPIPNVYFI-QGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILS 112
Query: 143 DMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYS 202
D A G + DH +L +++ F Y G ++K++ G L+ + +
Sbjct: 113 DAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQ 172
Query: 203 QVKILKPPSSRSHSAELFLLGRGFKGK 229
V KP +SR+ S E++L+ + F G+
Sbjct: 173 LVHTTKPKASRNESREIYLVCKNFLGR 199
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 221 bits (565), Expect = 7e-74
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 15/195 (7%)
Query: 38 KENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLV 97
R R+AFKL + + + +R G V++ G++PG W+QV L +
Sbjct: 2 SLQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLA-----------RKI 50
Query: 98 LSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDD---KLDVVLSDMAPNATGMREM 154
+S+D + I G + +CD + I D + L+++ K+D V+SD +G+
Sbjct: 51 ISIDLQEMEEIAGVRFI-RCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSR 109
Query: 155 DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRS 214
DH + Q+ V+ AV Y + G + L+K + G + +S KI KPP+SR
Sbjct: 110 DHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRG 169
Query: 215 HSAELFLLGRGFKGK 229
S+E++++ GFK +
Sbjct: 170 SSSEIYIMFFGFKAE 184
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 141 bits (356), Expect = 2e-41
Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 21/213 (9%)
Query: 22 LWLKRQFADPYVQKAKKE--NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVA 79
+ + R A ++ + K + R KL + +++ +V+D G G W A
Sbjct: 34 VEVDRDTARRHLAEGKVDTGVAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYA 92
Query: 80 VKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDV 139
G KG L D P++ V + + + L+ K D
Sbjct: 93 AAQKEVSG-----VKGFTLGRDGHEK-PMN--VQSLGWNIITFKDKTDIHR-LEPVKCDT 143
Query: 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADC-LIKIWDGRNRPQLE--ES 196
+L D+ +++ + + V+ + G D +K+ LE E
Sbjct: 144 LLCDIGESSS-----SSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLEL 198
Query: 197 ITRFYSQVKILKPPSSRSHSAELFLLGRGFKGK 229
+ R + I + P SR+ + E++ +
Sbjct: 199 LQRRFGGTVI-RNPLSRNSTHEMYYVSGARSNV 230
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 122 bits (307), Expect = 7e-34
Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 19/207 (9%)
Query: 24 LKRQFADPYV--QKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVK 81
+ R A Y+ + R A K+ + + +LR +VLD G G WS A
Sbjct: 43 VDRTAARRYLKEGRTDVGISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAA 101
Query: 82 LVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVL 141
KG L ++ PI + + V + + D +L
Sbjct: 102 QKEVMS-----VKGYTLGIE-GHEKPIHMQTLGWNIVKFKDKSN---VFTMPTEPSDTLL 152
Query: 142 SDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLE--ESITR 199
D+ +++ + L + +K+ + +E E +
Sbjct: 153 CDIGESSSNPLVERDRTMKVLENF----ERWKHVNTENFCVKVLAPYHPDVIEKLERLQL 208
Query: 200 FYSQVKILKPPSSRSHSAELFLLGRGF 226
+ + + P SR+ + E++ +
Sbjct: 209 RFGGGIV-RVPFSRNSTHEMYYISGAR 234
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 65.1 bits (158), Expect = 1e-12
Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 40/195 (20%)
Query: 28 FADPYVQKAKKENYRCRSAFKLLE-------IDSKIKFLRPGLKVLDCGAAPGSWSQVAV 80
F + + RS KL E D + L G+ +D GA PG W+ V
Sbjct: 171 FYMGIPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLV 230
Query: 81 KLVNSHGYDSKQPKGLVLSVDKLPIYPI---DGAVVLSKCDFTQPDIQDRLVTILKDDKL 137
K V SVD P+ G V + + D +
Sbjct: 231 KR-----------NMWVYSVDNGPMAQSLMDTGQV-----TWLREDGFKFR---PTRSNI 271
Query: 138 DVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESI 197
++ DM + + + ++ V +K+ + ++ ++
Sbjct: 272 SWMVCDMVEKPAKVAAL-----------MAQWLVNGWCRETIFNLKLPMKKRYEEVSHNL 320
Query: 198 TRFYSQVKILKPPSS 212
+Q+ +
Sbjct: 321 AYIQAQLDEHGINAQ 335
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in
replication, dengue virus methyltransferase, structural
genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP:
c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A*
2p3l_A* 1r6a_A*
Length = 305
Score = 53.1 bits (127), Expect = 1e-08
Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 24/188 (12%)
Query: 41 YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNS---HGYDSKQPKGLV 97
R + KL + + P KV+D G G WS L N G P
Sbjct: 63 AVSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE 121
Query: 98 LSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHD 157
+ + + S D V + ++ D +L D+ ++ +
Sbjct: 122 PIPMSTYGWNLV--RLQSGVD----------VFFIPPERCDTLLCDIGESSP-----NPT 164
Query: 158 LITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQ--VKILKPPSSRSH 215
+ + V+ + +K+ + + E + + +++ P SR+
Sbjct: 165 VEAGRTLRVLNLVENWLSNNTQFCVKVLNP-YMSSVIEKMEALQRKHGGALVRNPLSRNS 223
Query: 216 SAELFLLG 223
+ E++ +
Sbjct: 224 THEMYWVS 231
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral
enzyme STR ATP-binding, nucleotide-binding, RNA
replication, structura genomics; HET: SAM; 1.70A {Yokose
virus}
Length = 282
Score = 48.8 bits (116), Expect = 3e-07
Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 26/188 (13%)
Query: 40 NYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNS---HGYDSKQPKGL 96
R + KL ++ + +++P V+D G G WS A L N + G+
Sbjct: 70 IAVSRGSAKLRWMEER-GYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFT----LGV 124
Query: 97 VLSVDKLPI--YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREM 154
+ + K D V ++ D +L D+ ++ +
Sbjct: 125 QGHEKPIMRTTLGWNLIRFKDKTD----------VFNMEVIPGDTLLCDIGESSPSIAVE 174
Query: 155 DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV--KILKPPSS 212
+ + L A + IK+ P + E ++R + +++ P S
Sbjct: 175 EQRTLRVLNCAKQWLQE---GNYTEFCIKVLCPY-TPLIMEELSRLQLKHGGGLVRVPLS 230
Query: 213 RSHSAELF 220
R+ + E++
Sbjct: 231 RNSTHEMY 238
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine,
virion, membrane, flavivirus, N7-methyltransferase,
2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus}
PDB: 2wa1_A*
Length = 276
Score = 45.7 bits (108), Expect = 3e-06
Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 28/188 (14%)
Query: 41 YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSV 100
R KL ID + + V+D G GSWS A N K L
Sbjct: 63 AVSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQPNVREV-----KAYTLGT 116
Query: 101 D------KLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREM 154
+ + + SK D VT ++ + D VL D+ +
Sbjct: 117 SGHEKPRLVETFGWNLITFKSKVD----------VTKMEPFQADTVLCDIGESNPTAAVE 166
Query: 155 DHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV--KILKPPSS 212
+T L + G +K+ + + E++ + ++ +++ P S
Sbjct: 167 ASRTLTVLNVISRWLEY---NQGCGFCVKVLNPY-SCDVLEALMKMQARFGGGLIRVPLS 222
Query: 213 RSHSAELF 220
R+ + E++
Sbjct: 223 RNSTHEMY 230
>2px2_A Genome polyprotein [contains: capsid protein C (core protein);
envelope protein M...; methyltransferase, SAH; HET: SAH;
2.00A {Murray valley encephalitis virus} PDB: 2px4_A*
2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Length = 269
Score = 45.7 bits (108), Expect = 4e-06
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 27/187 (14%)
Query: 41 YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAV--KLVNS-HGYDSKQPKGLV 97
R KL + + +F++P KV+D G G WS A K V GY KG
Sbjct: 54 PVSRGTAKLRWLVER-RFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYT----KGGP 108
Query: 98 LSVDKLPI--YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMD 155
+ + + Y + + S D V + D +L D+ ++ +
Sbjct: 109 GHEEPMLMQSYGWNIVTMKSGVD----------VFYKPSEISDTLLCDIGESSPSAEIEE 158
Query: 156 HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV--KILKPPSSR 213
+ L + + P C IKI P++ E + + +++ P SR
Sbjct: 159 QRTLRILEMVSDWLSR---GPKEFC-IKILCP-YMPKVIEKLESLQRRFGGGLVRVPLSR 213
Query: 214 SHSAELF 220
+ + E++
Sbjct: 214 NSNHEMY 220
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER,
transferase-transferase inhibito; HET: 36A SAH; 1.70A
{Dengue virus 3} PDB: 3p97_A* 2xbm_A* 3evg_A*
Length = 267
Score = 45.0 bits (106), Expect = 5e-06
Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 25/182 (13%)
Query: 44 RSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNS---HGYDSKQPKGLVLSV 100
R + KL + + P +V+D G G WS L GY P
Sbjct: 62 RGSAKLQWFVER-NMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVP 120
Query: 101 DKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLIT 160
+ I ++S D V L +K D +L D+ ++ +
Sbjct: 121 MSTYGWNIV--KLMSGKD----------VFYLPPEKCDTLLCDIGESSPSPTVEESR--- 165
Query: 161 QLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV--KILKPPSSRSHSAE 218
I V++ + K C IK+ + P + E + R + +++ P SR+ + E
Sbjct: 166 --TIRVLKMVEPWLKNNQFC-IKVLNP-YMPTVIEHLERLQRKHGGMLVRNPLSRNSTHE 221
Query: 219 LF 220
++
Sbjct: 222 MY 223
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor,
P nucleotide-binding, RNA replication, viral protein;
HET: SFG; 2.00A {West nile virus}
Length = 321
Score = 44.6 bits (105), Expect = 1e-05
Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 27/187 (14%)
Query: 41 YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNS---HGYDSKQPKGLV 97
R KL + + +FL P KV+D G G W GY KG
Sbjct: 75 PVSRGTAKLRWLVER-RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYT----KGGP 129
Query: 98 LSVDKLPI--YPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMD 155
+ + Y + + S D V + D +L D+ +++ +
Sbjct: 130 GHEEPQLVQSYGWNIVTMKSGVD----------VFYRPSECCDTLLCDIGESSSSAEVEE 179
Query: 156 HDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV--KILKPPSSR 213
H I L + P C +K+ P++ E + + +++ P SR
Sbjct: 180 HRTIRVLEMVEDWLHR---GPREFC-VKVLCPY-MPKVIEKMELLQRRYGGGLVRNPLSR 234
Query: 214 SHSAELF 220
+ + E++
Sbjct: 235 NSTHEMY 241
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 4e-05
Identities = 35/225 (15%), Positives = 62/225 (27%), Gaps = 86/225 (38%)
Query: 41 YRCRSAFKLLEIDSKI--KFLRPG-------LKVLDCGAA-------------PGSWSQV 78
RC A+ + I L L + + P QV
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-KQV 366
Query: 79 AVKLVNSH------GYDSKQPK---GLVLSVDKLPIYP-IDGAVVLSKCDFTQ--PDIQD 126
+ LVN G P+ GL L++ K +D S+ F++ +
Sbjct: 367 EISLVNGAKNLVVSGP----PQSLYGLNLTLRKAKAPSGLDQ----SRIPFSERKLKFSN 418
Query: 127 RLVTI-------LKDDKLDVVLSDMAPN----------------ATG--MREMDHDLITQ 161
R + + L D++ D+ N G +R + + +
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 162 LAIAVIRFAVTYSK-------------PGADCLI-----KIWDGR 188
+ +IR V + PG + + DG
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Score = 33.1 bits (75), Expect = 0.087
Identities = 31/162 (19%), Positives = 56/162 (34%), Gaps = 40/162 (24%)
Query: 83 VNSHGYDSKQPKGLVLSVDKL----PIYPIDGAVVLS--KCDF--TQPDIQDRLVTILKD 134
++++ S +P L LS L + P + S + F P+ + D
Sbjct: 1 MDAY---STRP--LTLSHGSLEHVLLV-PTASFFIASQLQEQFNKILPEPTEGFA---AD 51
Query: 135 DK-----------LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGAD--CL 181
D+ L V S + P+ G D + L + + F Y + G D L
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVG----QFDQV--LNLCLTEFENCYLE-GNDIHAL 104
Query: 182 IKIWDGRNRPQLEES---ITRFYSQVKILKPPSSRSHSAELF 220
N L ++ I + + + K P + ++ LF
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Score = 31.2 bits (70), Expect = 0.35
Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 55/180 (30%)
Query: 15 GKD--HSS----HLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDC 68
G D +S +W R AD + K+ Y F +L+I P +
Sbjct: 1632 GMDLYKTSKAAQDVW-NR--ADNHF----KDTY----GFSILDIVIN----NPVNLTIHF 1676
Query: 69 GAAPGSWSQVAVKLVNSHGYDSK-----QPKGLVLSVD-KLPIYPIDG-AVVLSKCDFTQ 121
G G + + ++ +++ + + + ++ Y +LS FTQ
Sbjct: 1677 GGEKG---KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 122 PDIQDRLVTI-------LKDDKLDVVLSDMAPNATGMREMDHDL--ITQL-AIA-VIRFA 170
P L + LK L + A G H L L ++A V+
Sbjct: 1734 P----ALTLMEKAAFEDLKSKGLIPADATFA----G-----HSLGEYAALASLADVMSIE 1780
Score = 29.6 bits (66), Expect = 1.1
Identities = 44/274 (16%), Positives = 76/274 (27%), Gaps = 98/274 (35%)
Query: 13 PKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAF-----------KLLEI--------D 53
P K +S L+ + + N + + F +L ++
Sbjct: 136 PFDKKSNSALF----------RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 54 SKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYD--------SKQPKGLVL-SVDKLP 104
IKF L L + + + V + G + S P L S+ P
Sbjct: 186 DLIKFSAETLSEL-------IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI---P 235
Query: 105 I-YPIDG-------AVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS---DMAPNATGMRE 153
I P+ G V FT +++ L + +V + +
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ-GLVTAVAIAETDSWESFFV 294
Query: 154 MDHDLITQLAIAVIR----FAVTYSKPG--ADCL------------IKIWDGRNRPQLEE 195
IT L +R + T P D L I + Q+++
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS---NLTQEQVQD 351
Query: 196 SITRF------YSQVKI-LK----------PPSS 212
+ + QV+I L PP S
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA
capping, S-adenosyl-L-methionine, viral protein; HET:
SAM; 2.90A {Meaban virus}
Length = 265
Score = 42.3 bits (99), Expect = 6e-05
Identities = 27/179 (15%), Positives = 69/179 (38%), Gaps = 16/179 (8%)
Query: 44 RSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKL 103
R KL ++ + ++ +V+D G G WS A + + L V
Sbjct: 58 RGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASRPHVMDV-----RAYTLGVGG- 110
Query: 104 PIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLA 163
P + + + L ++ DV++ D+ ++ ++ + ++
Sbjct: 111 HEVPRITESYGWNIVKFKSRVD---IHTLPVERTDVIMCDVGESSPKW-SVESERTIKIL 166
Query: 164 IAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQV--KILKPPSSRSHSAELF 220
+ ++ V P AD ++K+ ++ E ++ + +++ P SR+ + E++
Sbjct: 167 ELLEKWKV--KNPSADFVVKVLCPY-SVEVMERLSVMQRKWGGGLVRNPYSRNSTHEMY 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.001
Identities = 34/229 (14%), Positives = 56/229 (24%), Gaps = 58/229 (25%)
Query: 15 GKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKL-LEIDSKIKFLR---------PGLK 64
+S L+ Q R + + L I S LR L
Sbjct: 190 KNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 65 VLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDI 124
VL + K N+ K L+ + K + A T +
Sbjct: 249 VLL-----NVQN---AKAWNAFNLSCKI---LLTTRFKQVTDFLSAATT------THISL 291
Query: 125 QDRLVTILKDDKLDVVLSDMAPNATGMREMDHDL------ITQLAIAVIRFAVTYSKPGA 178
+T+ D+ ++L R DL +++I
Sbjct: 292 DHHSMTLTPDEVKSLLL-----KYLDCRP--QDLPREVLTTNPRRLSII---------AE 335
Query: 179 D-----CLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELFLL 222
W N +L I + L+P R L +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNV---LEPAEYRKMFDRLSVF 381
Score = 37.9 bits (87), Expect = 0.002
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 118 DFTQPDIQDRLVTILKDDKLDVVLSDMAPNA-TGMREMDHDLITQLAIAVIRFAVTYSKP 176
+F D+QD +IL +++D ++ M+ +A +G + L+++ V +F +
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 177 GADCLIKIWDGRNR-PQL-----EESITRFYSQVKILKP 209
L+ R P + E R Y+ ++
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 35.4 bits (81), Expect = 0.010
Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 29/205 (14%)
Query: 14 KGKDHSSHLWLK-----RQFADPYVQKAKKENYRCRSAFK-----LLEIDSKIKFLRPGL 63
+ D S L + + K + YR +AF+ + K +R G
Sbjct: 19 EFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNPIRKGT 78
Query: 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPD 123
KVL GAA G+ SH D + G V+ P +L
Sbjct: 79 KVLYLGAASGTTI--------SHVSDIIELNGKAYGVE---FSPRVVRELLLVA-----Q 122
Query: 124 IQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIK 183
+ + +L D + + N + I A + K D L+
Sbjct: 123 RRPNIFPLLADARFPQSYKSVVENVDVL--YVDIAQPDQTDIAIYNAKFFLKVNGDMLLV 180
Query: 184 IWDGRNRPQLEESITRFYSQVKILK 208
I R+ ++ + ++V+ L+
Sbjct: 181 IK-ARSIDVTKDPKEIYKTEVEKLE 204
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 33.0 bits (75), Expect = 0.043
Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 19/153 (12%)
Query: 58 FLRPGLKVLDCGAAPGSWSQVAVKLVNSHG----YDSKQPKGLVLSVDKLPIYPIDGAVV 113
F++ G V+D G+ + LV +G +D Q K + + KL + V
Sbjct: 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFD-IQDKAIANTTKKLTDLNLIDRVT 77
Query: 114 LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLA--IAVIRFAV 171
L K D D + V+ ++ +G DH + T+ I + A+
Sbjct: 78 LIKDGHQNMDKYI-------DCPVKAVMFNLGYLPSG----DHSISTRPETTIQALSKAM 126
Query: 172 TYSKPGADCLIKIWDGRNRPQLE-ESITRFYSQ 203
G + I+ G + E E + F
Sbjct: 127 ELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKG 159
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 32.7 bits (75), Expect = 0.053
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 33/109 (30%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVV----- 113
L+ G+ VLD G G + K+V KG V ++D + +V
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVG--------EKGKVYAID------VQEEMVNYAWE 80
Query: 114 ------LSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDH 156
L + + + L D+ +D + A E+
Sbjct: 81 KVNKLGLKNVEVLKSEENK---IPLPDNTVDFIFM-----AFTFHELSE 121
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 32.2 bits (73), Expect = 0.11
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVD 101
PG KVL+ G G+ + + K P + S+D
Sbjct: 35 YPPGAKVLEAGCGIGAQTVILAKNN---------PDAEITSID 68
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 31.9 bits (72), Expect = 0.12
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVD 101
++PG K+L+ G G S V V G V +D
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVG--------SSGHVTGID 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.31
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 13/38 (34%)
Query: 44 RSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVK 81
+ A K L+ + +K +AP +A+K
Sbjct: 19 KQALKKLQ--ASLKLYAD-------DSAPA----LAIK 43
Score = 29.1 bits (64), Expect = 0.82
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 34 QKAKKENYRCRSAFKLLEIDSKIKFLRPGLKV 65
Q KK +++ KL DS P L +
Sbjct: 20 QALKK----LQASLKLYADDSA-----PALAI 42
Score = 26.8 bits (58), Expect = 4.8
Identities = 2/19 (10%), Positives = 11/19 (57%)
Query: 194 EESITRFYSQVKILKPPSS 212
++++ + + +K+ S+
Sbjct: 19 KQALKKLQASLKLYADDSA 37
Score = 26.1 bits (56), Expect = 8.2
Identities = 10/26 (38%), Positives = 10/26 (38%), Gaps = 10/26 (38%)
Query: 132 LKDDKLDVVLS----DMAP----NAT 149
LK KL L D AP AT
Sbjct: 22 LK--KLQASLKLYADDSAPALAIKAT 45
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 30.8 bits (69), Expect = 0.33
Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 14/146 (9%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD 118
LRPG+ +L+ G G+ S + +N KG + V++ + A+
Sbjct: 108 LRPGMDILEVGVGSGNMSSYILYALN--------GKGTLTVVERDE-DNLKKAMDNLSEF 158
Query: 119 FTQPDIQDRLVTILK---DDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSK 175
+ +++ I D D V++D+ ++++ + S+
Sbjct: 159 YDIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSE 218
Query: 176 PGADCLIKIWDGRNRPQLEESITRFY 201
L G + + E + R
Sbjct: 219 KTVLSLSA--SGMHHLETVELMKRRI 242
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; HET: SAH; 2.30A {Bacillus
cereus} PDB: 2gh1_A
Length = 284
Score = 30.7 bits (69), Expect = 0.34
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHG 87
+ + ++D G G V + L+
Sbjct: 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGS 48
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 30.4 bits (68), Expect = 0.49
Identities = 25/117 (21%), Positives = 38/117 (32%), Gaps = 29/117 (24%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP-------------I 105
G VLD G G +A KLV G V+ VD L
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLV--------GEHGKVIGVDMLDNQLEVARKYVEYHA 132
Query: 106 YPIDGAVVLSKCDFTQPDIQDR---LVTILKDDKLDVVLSDMAPN-----ATGMREM 154
G+ S F + I++ + D +D+V+S+ N +E+
Sbjct: 133 EKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEI 189
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 29.7 bits (66), Expect = 0.59
Identities = 37/208 (17%), Positives = 72/208 (34%), Gaps = 36/208 (17%)
Query: 14 KGKDHSSHLWLK-----RQFADPYVQKAKKENYRCRSAFK-----LLEIDSKIKFLRPGL 63
D + K ++ D + K E YR + K + K+ ++
Sbjct: 17 DLGDGLKRIATKSIVKGKKVYDEKIIKIGDEEYRIWNPNKSKLAAAIIKGLKVMPIKRDS 76
Query: 64 KVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPD 123
K+L GA+ G+ + KG+V +++ P + ++ + P
Sbjct: 77 KILYLGASAGTTPSHVADIA---------DKGIVYAIEYAPRIMRELLDACAERENIIPI 127
Query: 124 IQDR---LVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADC 180
+ D +K+DV+ D+A A +I+ A + K G
Sbjct: 128 LGDANKPQEYANIVEKVDVIYEDVAQPNQ-------------AEILIKNAKWFLKKGGYG 174
Query: 181 LIKIWDGRNRPQLEESITRFYSQVKILK 208
+I I R+ ++ F Q +IL+
Sbjct: 175 MIAIK-ARSIDVTKDPKEIFKEQKEILE 201
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 29.5 bits (67), Expect = 0.73
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 60 RPGLKVLDCGAAPGSWS-QVAVKLVNSHGYDSKQPKGLVLSVD 101
R +LD AAPG + +A + N KG +++V+
Sbjct: 82 REDDFILDMCAAPGGKTTHLAQLMKN---------KGTIVAVE 115
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 29.6 bits (67), Expect = 0.89
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 10/43 (23%)
Query: 60 RPGLKVLDCGAAPGSWS-QVAVKLVNSHGYDSKQPKGLVLSVD 101
+PG KVLD AAPG S Q+A ++ KGL+++ +
Sbjct: 104 KPGEKVLDLCAAPGGKSTQLAAQMKG---------KGLLVTNE 137
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 29.3 bits (66), Expect = 0.97
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 10/43 (23%)
Query: 60 RPGLKVLDCGAAPGSWS-QVAVKLVNSHGYDSKQPKGLVLSVD 101
+V+D AAPGS + Q++ ++ N +G +L+ +
Sbjct: 116 NAPQRVMDVAAAPGSKTTQISARMNN---------EGAILANE 149
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 29.2 bits (65), Expect = 0.97
Identities = 21/170 (12%), Positives = 52/170 (30%), Gaps = 18/170 (10%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHG----YDSKQPKGLVLSVDKLPIYPIDGAVVL 114
+ PG +++ G G+ + +V G Y+ + L+ + + D V +
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYE-IREDFAKLAWENIKWAGFDDRVTI 149
Query: 115 SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS 174
D + ++++ +D V+ D+ + L
Sbjct: 150 KLKDIYEG---------IEEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCSNQV 200
Query: 175 KPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSR--SHSAELFLL 222
+ L + D +P+ + K P + H+ ++
Sbjct: 201 MRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRTTALVHTG--YIT 248
>1ihm_A Capsid protein; beta-barrel, EF-TU-like domain caliciviridae, T=3
icosahedra icosahedral virus; 3.40A {Norwalk virus}
SCOP: b.121.4.3
Length = 530
Score = 29.4 bits (65), Expect = 0.98
Identities = 9/66 (13%), Positives = 18/66 (27%)
Query: 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDF 119
+ + V++ V S + +D P +P +G + D
Sbjct: 264 QFQNGRCTLDGRLVGTTPVSLSHVAKIRGTSNGTVINLTELDGTPFHPFEGPAPIGFPDL 323
Query: 120 TQPDIQ 125
D
Sbjct: 324 GGCDWH 329
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 29.1 bits (65), Expect = 1.0
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 44 RSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLV 83
S + I ++++ +VLD G G + +
Sbjct: 36 DSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG 75
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Length = 122
Score = 28.3 bits (64), Expect = 1.1
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 16/52 (30%)
Query: 2 ISTTGPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKE---NYRCRSAFKLL 50
I ++ E+ R +A+ + K R A L
Sbjct: 22 IEAPWARVDEM-------------RGYAEKLIDYGKLGDTNERAMRMADFWL 60
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 29.1 bits (66), Expect = 1.2
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 60 RPGLKVLDCGAAPGSWS-QVAVKLVNSHGYDSKQPKGLVLSVD 101
+PG V D AAPG + +A + N G++ + D
Sbjct: 117 KPGEIVADMAAAPGGKTSYLAQLMRN---------DGVIYAFD 150
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase
fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A
{Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A*
2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 28.9 bits (64), Expect = 1.3
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 18 HSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ 77
S +L +Q+ + KL I +I + +K+L G G
Sbjct: 17 ESFRRFLNHSTEHQCMQEFMDK--------KLPGIIGRIGDTKSEIKILSIGGGAGEIDL 68
Query: 78 VAVKLVNSH 86
+ V +
Sbjct: 69 QILSKVQAQ 77
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 28.7 bits (64), Expect = 1.4
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 35 KAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL-VNSHGYD 89
+E +R + I + + +VLD G G + ++ + + S G D
Sbjct: 15 FLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVD 70
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 28.8 bits (65), Expect = 1.5
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 60 RPGLKVLDCGAAPGSWS-QVAVKLVNSHGYDSKQPKGLVLSVD 101
+PG +VLD AAPG + +A ++ KGL+L+ +
Sbjct: 100 KPGERVLDLAAAPGGKTTHLAARMGG---------KGLLLANE 133
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 28.5 bits (63), Expect = 1.5
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 27/99 (27%)
Query: 58 FLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKC 117
++PG VL G A G+ + SH D +G + ++ P ++
Sbjct: 70 PIKPGKSVLYLGIASGTTA--------SHVSDIVGWEGKIFGIE---FSPRVLRELVPIV 118
Query: 118 -----------DFTQPDIQDRLVTILKDDKLDVVLSDMA 145
D T+P+ LV K+DV+ D+A
Sbjct: 119 EERRNIVPILGDATKPEEYRALV-----PKVDVIFEDVA 152
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 28.4 bits (63), Expect = 1.6
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCD 118
++ G +++D G G+ V + V G V + +K + L+K
Sbjct: 110 VKEGDRIIDTGVGSGAMCAVLARAV--------GSSGKVFAYEKREEFAKLAESNLTKWG 161
Query: 119 FTQPDIQDRLVTILKDDK--LDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKP 176
+ D+ +D + D+ + + L A + +
Sbjct: 162 LIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQE 221
Query: 177 GADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSR--SHSAELFLL 222
L + R ++ ES+ R Y V P R +H+A +++
Sbjct: 222 TLKKLQE--LPFIRIEVWESLFRPYKPVPERLRPVDRMVAHTA--YMI 265
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related
protein; ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 28.3 bits (63), Expect = 1.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 56 IKFLRPGLKVLDCGAAPGSWS 76
++L+ +VLD G G WS
Sbjct: 49 EEYLKNPCRVLDLGGGTGKWS 69
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 28.2 bits (63), Expect = 2.0
Identities = 33/184 (17%), Positives = 55/184 (29%), Gaps = 37/184 (20%)
Query: 29 ADPYVQKAKKENYRCRSAFKLLE-IDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHG 87
A Y K ++ + LL+ ++ +PG +LD G G ++ +
Sbjct: 32 ATLYQDKH---SFVWQYGEDLLQLLN-----PQPGEFILDLGCGTGQLTEKIAQSG---- 79
Query: 88 YDSKQPKGLVLSVDKLPIYPIDGA-VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAP 146
VL D I+ A F D ++ D LD V S
Sbjct: 80 -------AEVLGTDNAA-TMIEKARQNYPHLHFDVADARN----FRVDKPLDAVFS---- 123
Query: 147 NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKI 206
NA + + A I K G + + N + E++ + I
Sbjct: 124 NAMLHWVKEPE-------AAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGI 176
Query: 207 LKPP 210
P
Sbjct: 177 HNPQ 180
>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis,
phosphoprotein, differentiation, CRMP, cytoplasm, TIM
barrel, polymorphism, axonal pathfinding; 1.9A {Homo
sapiens} PDB: 2gse_A 1kcx_A
Length = 501
Score = 28.0 bits (63), Expect = 2.6
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 120 TQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQ 161
P D L ++L L V S T + + D T
Sbjct: 320 PDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTL 361
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 28.1 bits (62), Expect = 2.7
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCR------------SAFKLLEIDSKIKFLRPGL 63
++ + L ++ AD Y + + L S +
Sbjct: 169 RNIPAFQTLAQRLADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLLRFSDSE 228
Query: 64 KVLDCGAAPGSWS 76
K++DCGA+ G
Sbjct: 229 KMVDCGASIGESL 241
>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation,
dihydropyrimi amidohydrolase, nucleotide metabolism,
DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}
Length = 541
Score = 28.1 bits (63), Expect = 3.1
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 120 TQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQ 161
P D L+ +L +D L +D T + + D T+
Sbjct: 325 PDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTK 366
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 27.8 bits (61), Expect = 3.1
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 33/160 (20%)
Query: 48 KLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYP 107
+LL+ ++ + R G + + G P + + + S V V+ P
Sbjct: 109 ELLKNEAALGRFRRGERAVFIGGGPLPLTGILL---------SHVYGMRVNVVEIEP--- 156
Query: 108 IDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLA---I 164
LS+ +++ L D ++V+ D E D ++ LA
Sbjct: 157 --DIAELSR----------KVIEGLGVDGVNVITGDET--VIDGLEFDVLMVAALAEPKR 202
Query: 165 AVIRFAVTYSKPGADCLIKIWDGR----NRPQLEESITRF 200
V R Y + + + G P ++ IT F
Sbjct: 203 RVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGF 242
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
3fik_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N*
3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L
1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N 2i2v_N ...
Length = 120
Score = 26.7 bits (60), Expect = 3.2
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 16/51 (31%)
Query: 2 ISTTGPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKENY--RCRSAFKLL 50
I TT PK KE+ R+ +P + AK ++ R R AF
Sbjct: 34 IKTTLPKAKEL-------------RRVVEPLITLAKTDSVANR-RLAFART 70
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 27.9 bits (63), Expect = 3.3
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 59 LRPGLKVLDCGAAPG 73
+ G +LD AAPG
Sbjct: 244 PQNGEHILDLCAAPG 258
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel,
beta-sandwich; HET: KCX; 2.05A {Dictyostelium
discoideum} SCOP: b.92.1.3 c.1.9.6
Length = 521
Score = 27.7 bits (62), Expect = 4.0
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 120 TQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQ 161
P + L+ L LD V +D + M D T+
Sbjct: 302 PDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTK 343
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 27.2 bits (60), Expect = 4.4
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 26 RQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWS 76
+++ + + RS + LE +K+++ KVLD G +S
Sbjct: 4 KEYYRVFPTYTDINSQEYRSRIETLE-PLLMKYMKKRGKVLDLACGVGGFS 53
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 26.7 bits (59), Expect = 4.9
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 9/46 (19%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLP 104
+P + D G GS + ++ P+ + +
Sbjct: 23 PKPHETLWDIGGGSGSIAIEWLRST---------PQTTAVCFEISE 59
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 27.2 bits (61), Expect = 5.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 59 LRPGLKVLDCGAAPG 73
+PG V+D AAPG
Sbjct: 257 PKPGETVVDLAAAPG 271
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 27.1 bits (60), Expect = 5.2
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLV 83
R +VLD GA G + V
Sbjct: 19 CRAEHRVLDIGAGAGHTALAFSPYV 43
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei;
transcription, gene regulation; 1.90A {Moorella
thermoacetica} PDB: 2vy9_A 3ztb_A*
Length = 123
Score = 26.2 bits (58), Expect = 5.8
Identities = 11/91 (12%), Positives = 31/91 (34%), Gaps = 15/91 (16%)
Query: 96 LVLSVDKLPIYPIDGAVVLSKC----DFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGM 151
+ V PI +D V++ D + ++ L+ + ++ D+ + +
Sbjct: 1 MSSRV---PILKVDDYWVVAIEETLHDQSVIQFKEELLHNITGVAGKGLVIDI----SAL 53
Query: 152 REMDHDLITQLAIAVIRFAVTYSKPGADCLI 182
+D + +I + G ++
Sbjct: 54 EVVD----EFVTRVLIEISRLAELLGLPFVL 80
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
3t7s_A* 3t7r_A* 3t7t_A*
Length = 267
Score = 26.8 bits (59), Expect = 6.2
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 54 SKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSH 86
S I L + D G G + V V
Sbjct: 39 SFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQ 71
>1wyw_A TDG, G/T mismatch-specific thymine DNA glycosylase; hydrolase;
2.10A {Homo sapiens} SCOP: c.18.1.2 PDB: 2d07_A 3uob_A*
2rba_A* 3ufj_A* 3uo7_A*
Length = 230
Score = 26.6 bits (58), Expect = 6.6
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 58 FLRPGLKVLDCGAAPGSWS 76
L L ++ G PG +
Sbjct: 18 ILTFNLDIVIIGINPGLMA 36
>1mug_A Protein (G:T/U specific DNA glycosylase); hydrolase; 1.80A
{Escherichia coli} SCOP: c.18.1.2 PDB: 1mtl_A 1mwi_A*
1mwj_A
Length = 168
Score = 26.1 bits (57), Expect = 7.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 59 LRPGLKVLDCGAAPGSWS 76
L PGL+V+ CG PG S
Sbjct: 6 LAPGLRVVFCGINPGLSS 23
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 26.4 bits (58), Expect = 8.0
Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 35/166 (21%)
Query: 29 ADPYVQKAKKENYRCRSAFKLLE-IDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHG 87
A Y++ + R R A LL + L L D G PG+ +++
Sbjct: 8 AQQYLKFE---DERTRPARDLLAQVP-----LERVLNGYDLGCGPGNSTELLTDRY---- 55
Query: 88 YDSKQPKGLVLSVDKLPIYPIDGA-VVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAP 146
++ +D ++ A L +F + D+ K D++ +
Sbjct: 56 -----GVNVITGIDSDDDM-LEKAADRLPNTNFGKADLAT----WKPAQKADLLYA---- 101
Query: 147 NATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQ 192
NA DH AV+ + + G +++ D P
Sbjct: 102 NAVFQWVPDHL-------AVLSQLMDQLESGGVLAVQMPDNLQEPT 140
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L*
1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K*
3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O
1voy_O 1vp0_O
Length = 116
Score = 25.5 bits (57), Expect = 8.1
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 13/37 (35%)
Query: 2 ISTTGPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKK 38
I TT K KE+ R F + + AK
Sbjct: 34 IQTTLTKAKEL-------------RPFVEQLITTAKG 57
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like
domain, Trp repressor-like domain, helix-turn-helix
motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1
PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q
2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R
2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Length = 118
Score = 25.6 bits (57), Expect = 8.6
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 16/51 (31%)
Query: 2 ISTTGPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKKE--NYRCRSAFKLL 50
I+TT PK KE+ R F D + AK+ + R R + L
Sbjct: 34 ITTTVPKAKEL-------------RGFVDHLIHLAKRGDLHAR-RLVLRDL 70
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Length = 205
Score = 25.9 bits (57), Expect = 9.7
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 13/37 (35%)
Query: 2 ISTTGPKLKEVPKGKDHSSHLWLKRQFADPYVQKAKK 38
I TT + + V R++ D + AK
Sbjct: 123 IKTTKARARAV-------------RKYVDKMITMAKD 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,462,103
Number of extensions: 202342
Number of successful extensions: 736
Number of sequences better than 10.0: 1
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 77
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)