RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1489
(229 letters)
>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli
[TaxId: 562]}
Length = 180
Score = 140 bits (354), Expect = 1e-42
Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 9/187 (4%)
Query: 41 YRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSV 100
R R+ FKL EI K +PG+ V+D GAAPG WSQ V + G +++
Sbjct: 2 LRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGR--------IIAC 53
Query: 101 DKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLIT 160
D LP+ PI G L + DF + L+ + D K+ VV+SDMAPN +G +D
Sbjct: 54 DLLPMDPIVGVDFL-QGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 112
Query: 161 QLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITRFYSQVKILKPPSSRSHSAELF 220
L + PG ++K++ G + I +++VK+ KP SSR+ S E++
Sbjct: 113 YLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVY 172
Query: 221 LLGRGFK 227
++ G K
Sbjct: 173 IVATGRK 179
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 113 bits (283), Expect = 3e-31
Identities = 29/208 (13%), Positives = 68/208 (32%), Gaps = 24/208 (11%)
Query: 23 WLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKL 82
+ + + + R + KL + + P KV+D G G WS L
Sbjct: 29 VDRTLAKEGIKRGETDHHAVSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL 87
Query: 83 VNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRL---VTILKDDKLDV 139
N KGL PI + + ++ + V + ++ D
Sbjct: 88 KNVRE-----VKGLTKGGP-GHEEPIPMST------YGWNLVRLQSGVDVFFIPPERCDT 135
Query: 140 VLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNRPQLEESITR 199
+L D+ + + ++ + V+ + +K+ + + E +
Sbjct: 136 LLCDIGES-SPNPTVEAGRT----LRVLNLVENWLSNNTQFCVKVLNP-YMSSVIEKMEA 189
Query: 200 FYSQVK--ILKPPSSRSHSAELFLLGRG 225
+ +++ P SR+ + E++ +
Sbjct: 190 LQRKHGGALVRNPLSRNSTHEMYWVSNA 217
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 31.3 bits (70), Expect = 0.058
Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 17/171 (9%)
Query: 60 RPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDF 119
+LDC G S+ ++ VL + + + V L K +
Sbjct: 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY 81
Query: 120 TQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYSKPGAD 179
+ D L+ L +K+D +L D+ + ++ + + + ++ A PG
Sbjct: 82 RE---ADFLLKTLGIEKVDGILMDLGVSTYQLKGENRE--LENLKEFLKKAEDLLNPGGR 136
Query: 180 CLIKIWDGRNRPQLEESITRFYSQVKIL--KP--PS-------SRSHSAEL 219
++ + ++E R +++IL KP PS R+ S L
Sbjct: 137 IVVISFHSLEDRIVKE-TFRNSKKLRILTEKPVRPSEEEIRENPRARSGRL 186
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 280
Score = 30.7 bits (68), Expect = 0.12
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 8/103 (7%)
Query: 48 KLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSK--------QPKGLVLS 99
KL I +I + +K+L G G + V + + +
Sbjct: 27 KLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKY 86
Query: 100 VDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLS 142
+ + V + T + Q R++ + K D +
Sbjct: 87 KELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHM 129
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia
coli [TaxId: 562]}
Length = 245
Score = 29.9 bits (66), Expect = 0.18
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGY 88
++PG ++LD G+ G + G
Sbjct: 31 MKPGTRILDLGSGSGEMLCTWARDHGITGT 60
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 29.4 bits (65), Expect = 0.35
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHG 87
+ PG VL+ G+ G S K V S G
Sbjct: 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQG 124
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 223
Score = 28.3 bits (62), Expect = 0.75
Identities = 15/139 (10%), Positives = 43/139 (30%), Gaps = 13/139 (9%)
Query: 55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVDKLPIYPIDGAVVL 114
L+PG ++LD G+ G + + + + G D+ ++ ++
Sbjct: 74 LRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTR---IVGIEHQA---------- 120
Query: 115 SKCDFTQPDIQDRLVTILKDDKLDVVLSDMAPNATGMREMDHDLITQLAIAVIRFAVTYS 174
++ ++ ++L +L +V D + + A +
Sbjct: 121 ELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQL 180
Query: 175 KPGADCLIKIWDGRNRPQL 193
G ++ + +
Sbjct: 181 ASGGRLIVPVGPDGGSQYM 199
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 87
Score = 26.8 bits (59), Expect = 0.76
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 126 DRLVTILKDDKLDVVLSDMAPNATGMRE-MDHDLITQLAIAVI 167
+RL T L+ V + E MD D T A +V+
Sbjct: 2 ERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVL 44
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus
subtilis [TaxId: 1423]}
Length = 234
Score = 28.0 bits (61), Expect = 0.92
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNS-HGYD 89
R +VLD GA G + V G D
Sbjct: 14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVD 45
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 27.3 bits (59), Expect = 1.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 48 KLLEIDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNS-HGYD 89
KL++I + L+ +VLD G + V +D
Sbjct: 6 KLMQIAA----LKGNEEVLDVATGGGHVANAFAPFVKKVVAFD 44
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 26.9 bits (59), Expect = 1.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHG 87
LRPG+ +L+ G G+ S + +N G
Sbjct: 83 LRPGMDILEVGVGSGNMSSYILYALNGKG 111
>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.7 bits (55), Expect = 2.6
Identities = 10/81 (12%), Positives = 26/81 (32%)
Query: 11 EVPKGKDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGA 70
+V + H ++ + A Y ++ + R S E + + +
Sbjct: 10 QVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETL 69
Query: 71 APGSWSQVAVKLVNSHGYDSK 91
P + + V++ G +
Sbjct: 70 TPDTQYEFQVRVKPLQGEFTT 90
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 26.6 bits (57), Expect = 2.6
Identities = 10/51 (19%), Positives = 18/51 (35%)
Query: 27 QFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWSQ 77
A+ Y ++ R ++ +E K R +VLD G +
Sbjct: 7 LLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTL 57
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1,
PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 26.3 bits (57), Expect = 3.4
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 57 KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGY 88
+ L VLD G+ G A K
Sbjct: 29 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVI 60
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 26.1 bits (57), Expect = 3.4
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVNSHGYDSKQPKGLVLSVD 101
+ PG +VL+ GA G+ + ++ V P G V+S +
Sbjct: 94 IFPGARVLEAGAGSGALTLSLLRAVG--------PAGQVISYE 128
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 26.4 bits (57), Expect = 3.5
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 55 KIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGY 88
+ K L VLD G G S A K H
Sbjct: 32 QNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVI 65
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)
{Haemophilus influenzae [TaxId: 727]}
Length = 225
Score = 25.5 bits (54), Expect = 5.0
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 57 KFLRPGLKVLDCGAAPGSWSQVAVKLVNSHGY 88
+F+ V D G + G+ + A + +N
Sbjct: 35 RFVTADSNVYDLGCSRGAATLSARRNINQPNV 66
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 209
Score = 25.4 bits (55), Expect = 5.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLVN 84
LR +VL GAA G+ +V+
Sbjct: 54 LRGDERVLYLGAASGTTVSHLADIVD 79
>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
{Methylobacillus flagellatus [TaxId: 405]}
Length = 395
Score = 25.7 bits (56), Expect = 5.2
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 12/81 (14%)
Query: 16 KDHSSHLWLKRQFADPYVQKAKKENYRCRSAFKLLEI------------DSKIKFLRPGL 63
++ + L ++ AD Y + + S +
Sbjct: 155 RNIPAFQTLAQRLADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLLRFSDSE 214
Query: 64 KVLDCGAAPGSWSQVAVKLVN 84
K++DCGA+ G + +
Sbjct: 215 KMVDCGASIGESLAGLIGVTK 235
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 25.2 bits (54), Expect = 6.8
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 59 LRPGLKVLDCGAAPGSWSQVAVKLV 83
L G K LD G+ G + ++V
Sbjct: 74 LHEGAKALDVGSGSGILTACFARMV 98
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 25.3 bits (54), Expect = 7.2
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 57 KFLRPGLKVLDCGAAPGSWSQVAVKLVNSH 86
+ + G VLD G G +
Sbjct: 20 LYTKRGDSVLDLGCGKGGDLLKYERAGIGE 49
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 25.2 bits (54), Expect = 8.2
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 52 IDSKIKFLRPGLKVLDCGAAPGSWSQVAVKLVNSHG 87
+ + + + + ++D G G V + L+
Sbjct: 18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGS 53
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 25.2 bits (53), Expect = 8.3
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 163 AIAVIRFAVTYSKPGADCLIKIWDGRNRPQL 193
+I G+D +I W+ + R ++
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 226
Score = 25.1 bits (53), Expect = 8.3
Identities = 32/205 (15%), Positives = 62/205 (30%), Gaps = 25/205 (12%)
Query: 27 QFADPYVQKAKKENYRCRSAFKLLEIDSKIKFLRPGLKVLDCGAAPGSWS-QVAVKLVNS 85
++ + + RS + LE +K+++ KVLD G +S +
Sbjct: 4 EYYRVFPTYTDINSQEYRSRIETLE-PLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEV 62
Query: 86 HGYDSKQPKGLVLSVDKLPIYPIDGAVVLSKCDFTQPDIQDRLVTILKDDKLDVVLSDMA 145
G D + + S+ + + D +D D V+
Sbjct: 63 VGVDISE-----------DMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIF--- 108
Query: 146 PNATGMREMDHDLITQLAIAVIRFAVTYSKPGADCLIKIWDGRNR-PQLEES--ITRFYS 202
+ V + KP ++ D R P+L+ES + + Y
Sbjct: 109 ------IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYW 162
Query: 203 QVKILKPPSSRSHSAELFLLGRGFK 227
K++ R+ E F+
Sbjct: 163 ISKVIPDQEERTVVIEFKSEQDSFR 187
>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase,
Mug {Escherichia coli [TaxId: 562]}
Length = 165
Score = 24.6 bits (53), Expect = 9.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 59 LRPGLKVLDCGAAPGSWS 76
L PGL+V+ CG PG S
Sbjct: 6 LAPGLRVVFCGINPGLSS 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0559 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 843,232
Number of extensions: 38157
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 27
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)