BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14891
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 293 bits (750), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 221/352 (62%), Gaps = 5/352 (1%)
Query: 5 ISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFT 64
++L +E+ A RS ID+ L + + +K+LLLGAGESGKST+VKQMKIIH DG++
Sbjct: 2 MTLSAEDKAAVERSKMIDRNLREDGEKAAKEVKLLLLGAGESGKSTIVKQMKIIHEDGYS 61
Query: 65 REELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLP 124
+E + +K V N + S+ ++ MG L+I+ A + A+ + + EE M P
Sbjct: 62 EDECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGEAARADDARQLF-VLAGSAEEGVMTP 120
Query: 125 DVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRT 184
+++ + LW+D GV+ +R EY+LNDSA Y +++RI Y+P DVLR RV+T
Sbjct: 121 ELAGVIKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKT 180
Query: 185 NGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVN 244
GI+ET+F + M DVGGQRS+R+KWI+CF+ V A+++ VALS YD+ L ED +N
Sbjct: 181 TGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMN 240
Query: 245 RLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDS 304
R+ ES+ LF+ + NN++F E S ILFLNK DLF EKI S + Y ++ G + +
Sbjct: 241 RMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTICY--PEYTGSN-TYEE 297
Query: 305 GALFIQHKFA-LRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQ 355
A +IQ +F L K IY HFT ATDT NVQ VF AV D++IK NL++
Sbjct: 298 AAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 349
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 288 bits (737), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 217/355 (61%), Gaps = 5/355 (1%)
Query: 6 SLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTR 65
+L +E+ A RS ID+ L + + +K+LLLGAGESGKST+VKQMKIIH G++
Sbjct: 3 TLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSE 62
Query: 66 EELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPD 125
EE + +K V N + S+ ++ MG L+I+ A + A+ + +E F M +
Sbjct: 63 EECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGF-MTAE 121
Query: 126 VSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTN 185
++ + LW+D GV+ R EY+LNDSA Y +++RI Y+P DVLR RV+T
Sbjct: 122 LAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTT 181
Query: 186 GIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNR 245
GI+ET+F + M DVGGQRS+R+KWI+CF+ V A+++ VALS YD+ L ED +NR
Sbjct: 182 GIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR 241
Query: 246 LDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSG 305
+ ES+ LF+ + NN++F + S ILFLNK DLF EKI S + Y ++ G + +
Sbjct: 242 MHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSN-TYEEA 298
Query: 306 ALFIQHKFA-LRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
A +IQ +F L K IY HFT ATDT NVQ VF AV D++IK NL+ L
Sbjct: 299 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 287 bits (735), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 216/355 (60%), Gaps = 5/355 (1%)
Query: 6 SLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTR 65
+L +E+ A RS ID+ L + + +K+LLLGAGESGKST+VKQMKIIH G++
Sbjct: 6 TLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSE 65
Query: 66 EELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPD 125
EE + +K V N + S+ ++ MG L+I+ A + A+ + +E F M +
Sbjct: 66 EECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGF-MTAE 124
Query: 126 VSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTN 185
++ + LW+D GV+ R EY+LNDSA Y +++RI Y+P DVLR RV+T
Sbjct: 125 LAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTT 184
Query: 186 GIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNR 245
GI+ET+F + M DVGGQRS+R+KWI+CF+ V A+++ VALS YD+ L ED +NR
Sbjct: 185 GIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR 244
Query: 246 LDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSG 305
+ ES+ LF+ + NN++F + S ILFLNK DLF EKI S + Y ++ G + +
Sbjct: 245 MHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSN-TYEEA 301
Query: 306 ALFIQHKFA-LRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
A +IQ +F L K IY HFT ATDT NVQ VF AV D++IK NL L
Sbjct: 302 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLPDCGLF 356
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 216/355 (60%), Gaps = 5/355 (1%)
Query: 6 SLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTR 65
+L +E+ A RS ID+ L + + +K+LLLGAGESGKST+VKQMKIIH G++
Sbjct: 3 TLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSE 62
Query: 66 EELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPD 125
EE + +K V N + S+ ++ MG L+I+ A + A+ + +E F M +
Sbjct: 63 EECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGF-MTAE 121
Query: 126 VSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTN 185
++ + LW+D GV+ R EY+LNDSA Y +++RI Y+P DVLR RV T
Sbjct: 122 LAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVPTT 181
Query: 186 GIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNR 245
GI+ET+F + M DVGGQRS+R+KWI+CF+ V A+++ VALS YD+ L ED +NR
Sbjct: 182 GIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR 241
Query: 246 LDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSG 305
+ ES+ LF+ + NN++F + S ILFLNK DLF EKI S + Y ++ G + +
Sbjct: 242 MHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSN-TYEEA 298
Query: 306 ALFIQHKFA-LRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
A +IQ +F L K IY HFT ATDT NVQ VF AV D++IK NL+ L
Sbjct: 299 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 286 bits (732), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 216/355 (60%), Gaps = 5/355 (1%)
Query: 6 SLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTR 65
+L +E+ A RS ID+ L + + +K+LLLGAGESGKST+VKQMKIIH G++
Sbjct: 10 TLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSE 69
Query: 66 EELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPD 125
EE + +K V N + S+ ++ MG L+I+ A + A+ + +E F M +
Sbjct: 70 EECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGF-MTAE 128
Query: 126 VSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTN 185
++ + LW+D GV+ R EY+LNDSA Y +++RI Y+P DVLR RV+T
Sbjct: 129 LAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTT 188
Query: 186 GIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNR 245
GI+ET+F + M DVGGQRS+R+KWI+CF+ V A+++ VALS YD+ L ED +NR
Sbjct: 189 GIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR 248
Query: 246 LDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSG 305
+ ES+ LF+ + NN++F + S ILFLNK DLF EKI S + Y ++ G + +
Sbjct: 249 MHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSN-TYEEA 305
Query: 306 ALFIQHKFA-LRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
A +IQ +F L K IY HFT ATD NVQ VF AV D++IK NL+ L
Sbjct: 306 AAYIQCQFEDLNKRKDTKEIYTHFTCATDAKNVQFVFDAVTDVIIKNNLKDCGLF 360
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 286 bits (731), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 216/355 (60%), Gaps = 5/355 (1%)
Query: 6 SLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTR 65
+L +E+ A RS ID+ L + + +K+LLLGAGESGKST+VKQMKIIH G++
Sbjct: 3 TLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSE 62
Query: 66 EELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPD 125
EE + +K V N + S+ ++ MG L+I+ A + A+ + +E F M +
Sbjct: 63 EECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGF-MTAE 121
Query: 126 VSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTN 185
++ + LW+D GV+ R EY+LNDSA Y +++RI Y+P DVLR RV+T
Sbjct: 122 LAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTT 181
Query: 186 GIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNR 245
GI+ET+F + M DVG QRS+R+KWI+CF+ V A+++ VALS YD+ L ED +NR
Sbjct: 182 GIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR 241
Query: 246 LDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSG 305
+ ES+ LF+ + NN++F + S ILFLNK DLF EKI S + Y ++ G + +
Sbjct: 242 MHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSN-TYEEA 298
Query: 306 ALFIQHKFA-LRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
A +IQ +F L K IY HFT ATDT NVQ VF AV D++IK NL+ L
Sbjct: 299 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 285 bits (729), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 148/363 (40%), Positives = 224/363 (61%), Gaps = 14/363 (3%)
Query: 1 MGACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHN 60
M C+S +++E A+R +DEI++QL + + +K+LLLG GESGKST +KQM+IIH
Sbjct: 1 MACCLSEEAKE--ARRINDEIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHG 58
Query: 61 DGFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTI----LSTMCCF 116
G++ E+ F V N+ ++M+ ++ M L+I + NK +A+ + + + F
Sbjct: 59 SGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAF 118
Query: 117 DEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATD 176
+ + A+ +LW D G++ R EY+L+DS Y +++R+ D Y+P D
Sbjct: 119 ENPY------VDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQD 172
Query: 177 VLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMT 236
VLR RV T GIIE F L I MVDVGGQRS+RRKWI+CF++V +++++VALS YD
Sbjct: 173 VLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQV 232
Query: 237 LLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFK 296
L+E + NR++ES LF ++ +F+ +S ILFLNK DL EKI+YS HL Y ++
Sbjct: 233 LVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS--HLVDYFPEYD 290
Query: 297 GPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQV 356
GP D + FI F N +S K+IY HFT ATDT N++ VF AV D ++++NL++
Sbjct: 291 GPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEY 350
Query: 357 TLL 359
L+
Sbjct: 351 NLV 353
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 285 bits (729), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/324 (45%), Positives = 207/324 (63%), Gaps = 5/324 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH DG++ +E + +K V N + S+ ++ MG L+I
Sbjct: 10 VKLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKI 69
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ A + A+ + + EE M P+++ + LW+D GV+ +R EY+LNDSA
Sbjct: 70 DFGEAARADDARQLF-VLAGSAEEGVMTPELAGVIKRLWRDGGVQACFSRSREYQLNDSA 128
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 129 SYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWI 188
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F E S ILFLNK D
Sbjct: 189 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKD 248
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 249 LFEEKIKRSPLTICY--PEYTGSN-TYEEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDT 305
Query: 335 SNVQTVFHAVMDLVIKINLQQVTL 358
NVQ VF AV D++IK NL++ L
Sbjct: 306 KNVQFVFDAVTDVIIKNNLKECGL 329
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 285 bits (728), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 216/355 (60%), Gaps = 5/355 (1%)
Query: 6 SLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTR 65
+L +E+ A RS ID+ L + + +K+LLLGAGESGKST+VKQMKIIH G++
Sbjct: 3 TLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSE 62
Query: 66 EELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPD 125
EE + +K V N + S+ ++ MG L+I+ A + A+ + +E F M +
Sbjct: 63 EECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGF-MTAE 121
Query: 126 VSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTN 185
++ + LW+D GV+ R EY+LNDSA Y +++RI Y+P DVLR RV+T
Sbjct: 122 LAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTT 181
Query: 186 GIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNR 245
GI+ET+F + M DVGG RS+R+KWI+CF+ V A+++ VALS YD+ L ED +NR
Sbjct: 182 GIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR 241
Query: 246 LDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSG 305
+ ES+ LF+ + NN++F + S ILFLNK DLF EKI S + Y ++ G + +
Sbjct: 242 MHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSN-TYEEA 298
Query: 306 ALFIQHKFA-LRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
A +IQ +F L K IY HFT ATDT NVQ VF AV D++IK NL+ L
Sbjct: 299 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 285 bits (728), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/324 (45%), Positives = 207/324 (63%), Gaps = 5/324 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH DG++ +E + +K V N + S+ ++ MG L+I
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKI 62
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ A + A+ + + EE M P+++ + LW+D GV+ +R EY+LNDSA
Sbjct: 63 DFGEAARADDARQLF-VLAGSAEEGVMTPELAGVIKRLWRDGGVQACFSRSREYQLNDSA 121
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 122 SYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWI 181
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F E S ILFLNK D
Sbjct: 182 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKD 241
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 242 LFEEKIKRSPLTICY--PEYTGSN-TYEEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDT 298
Query: 335 SNVQTVFHAVMDLVIKINLQQVTL 358
NVQ VF AV D++IK NL++ L
Sbjct: 299 KNVQFVFDAVTDVIIKNNLKECGL 322
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 285 bits (728), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 151/355 (42%), Positives = 216/355 (60%), Gaps = 5/355 (1%)
Query: 6 SLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTR 65
+L +E+ A RS ID+ L + + +K+LLLGAGESGKST+VKQMKIIH G++
Sbjct: 4 TLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSE 63
Query: 66 EELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPD 125
EE + +K V N + S+ ++ MG L+I+ + + A+ + +E F M +
Sbjct: 64 EECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGF-MTAE 122
Query: 126 VSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTN 185
++ + LW+D GV+ R EY+LNDSA Y +++RI Y+P DVLR RV+T
Sbjct: 123 LAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTT 182
Query: 186 GIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNR 245
GI+ET+F + M DV GQRS+R+KWI+CF+ V A+++ VALS YD+ L ED +NR
Sbjct: 183 GIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR 242
Query: 246 LDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSG 305
+ ES+ LF+ + NN++F + S ILFLNK DLF EKI S + Y ++ G + +
Sbjct: 243 MHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSN-TYEEA 299
Query: 306 ALFIQHKFA-LRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
A +IQ +F L K IY HFT ATDT NVQ VF AV D++IK NL+ L
Sbjct: 300 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 354
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 284 bits (727), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 216/355 (60%), Gaps = 5/355 (1%)
Query: 6 SLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTR 65
+L +E+ A RS ID+ L + + +K+LLLGA ESGKST+VKQMKIIH G++
Sbjct: 3 TLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAVESGKSTIVKQMKIIHEAGYSE 62
Query: 66 EELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPD 125
EE + +K V N + S+ ++ MG L+I+ A + A+ + +E F M +
Sbjct: 63 EECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGF-MTAE 121
Query: 126 VSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTN 185
++ + LW+D GV+ R EY+LNDSA Y +++RI Y+P DVLR RV+T
Sbjct: 122 LAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTT 181
Query: 186 GIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNR 245
GI+ET+F + M DVGGQRS+R+KWI+CF+ V A+++ VALS YD+ L ED +NR
Sbjct: 182 GIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR 241
Query: 246 LDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSG 305
+ ES+ LF+ + NN++F + S ILFLNK DLF EKI S + Y ++ G + +
Sbjct: 242 MHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSN-TYEEA 298
Query: 306 ALFIQHKFA-LRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
A +IQ +F L K IY HFT ATDT NVQ VF AV D++IK NL+ L
Sbjct: 299 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 283 bits (725), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 151/355 (42%), Positives = 215/355 (60%), Gaps = 5/355 (1%)
Query: 6 SLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTR 65
+L +E+ A RS ID+ L + + +K+LLLGAGESGKST+VKQMKI H G++
Sbjct: 4 TLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKICHEAGYSE 63
Query: 66 EELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPD 125
EE + +K V N + S+ ++ MG L+I+ A + A+ + +E F M +
Sbjct: 64 EECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGF-MTAE 122
Query: 126 VSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTN 185
++ + LW+D GV+ R EY+LNDSA Y +++RI Y+P DVLR RV+T
Sbjct: 123 LAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTT 182
Query: 186 GIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNR 245
GI+ET+F + M DVGGQRS+R+KWI+CF+ V A+++ VALS YD+ L ED +NR
Sbjct: 183 GIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR 242
Query: 246 LDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSG 305
+ ES+ LF+ + NN++F + S ILFLNK DLF EKI S + Y ++ G + +
Sbjct: 243 MHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSN-TYEEA 299
Query: 306 ALFIQHKFA-LRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
A +IQ +F L K IY HFT ATDT NV VF AV D++IK NL+ L
Sbjct: 300 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVCFVFDAVTDVIIKNNLKDCGLF 354
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 147/324 (45%), Positives = 206/324 (63%), Gaps = 5/324 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH DG++ +E + +K V N + S+ ++ MG L+I
Sbjct: 10 VKLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKI 69
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ A + A+ + + EE M P+++ + LW+D GV+ +R EY LNDSA
Sbjct: 70 DFGEAARADDARQLF-VLAGSAEEGVMTPELAGVIKRLWRDGGVQACFSRSREYLLNDSA 128
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 129 SYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWI 188
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F E S ILFLNK D
Sbjct: 189 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTETSIILFLNKKD 248
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 249 LFEEKIKRSPLTICY--PEYTGSN-TYEEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDT 305
Query: 335 SNVQTVFHAVMDLVIKINLQQVTL 358
NVQ VF AV D++IK NL++ L
Sbjct: 306 KNVQFVFDAVTDVIIKNNLKECGL 329
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/355 (42%), Positives = 215/355 (60%), Gaps = 5/355 (1%)
Query: 6 SLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTR 65
+L +E+ A RS ID+ L + + +K+LLLGAGESGKST+VKQMKIIH G++
Sbjct: 4 TLSAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSE 63
Query: 66 EELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPD 125
EE + +K V N + S+ ++ MG L+I+ + + A+ + +E F M +
Sbjct: 64 EECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGF-MTAE 122
Query: 126 VSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTN 185
++ + LW+D GV+ R EY+LNDSA Y +++RI Y+P DVLR RV+T
Sbjct: 123 LAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTT 182
Query: 186 GIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNR 245
GI+ET+F + M DV GQRS+R+KWI+CF+ V A+++ VALS YD+ L ED +NR
Sbjct: 183 GIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR 242
Query: 246 LDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSG 305
+ ES+ LF+ + NN+ F + S ILFLNK DLF EKI S + Y ++ G + +
Sbjct: 243 MHESMKLFDSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSN-TYEEA 299
Query: 306 ALFIQHKFA-LRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
A +IQ +F L K IY HFT ATDT NVQ VF AV D++IK NL+ L
Sbjct: 300 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 354
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 218/350 (62%), Gaps = 12/350 (3%)
Query: 14 AQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKP 73
A+R +DEI++QL + + +K+LLLG GESGKST +KQM+IIH G++ E+ F
Sbjct: 6 ARRINDEIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTK 65
Query: 74 TVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTI----LSTMCCFDEEFQMLPDVSTA 129
V N+ ++M+ ++ M L+I + NK +A+ + + + FD +PD + A
Sbjct: 66 LVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAFD-----VPDYA-A 119
Query: 130 MLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIE 189
+ +LW D G++ R EY+L+DS Y +++R+ D Y+P DVLR V T GIIE
Sbjct: 120 IKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVCVPTTGIIE 179
Query: 190 TNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDES 249
F L I MVDVGGQRS+RRKWI+CF++V +++++VALS YD L+E + NR++ES
Sbjct: 180 YPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES 239
Query: 250 LNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFI 309
LF ++ +F+ +S ILFLNK DL EKI+YS HL Y ++ GP D + FI
Sbjct: 240 KALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS--HLVDYFPEYDGPQRDAQAAREFI 297
Query: 310 QHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
F N +S K+IY HFT ATDT N++ VF AV D ++++NL++ L+
Sbjct: 298 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 347
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 220/363 (60%), Gaps = 14/363 (3%)
Query: 1 MGACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHN 60
MG +S +E+ A RS ID+ L + + + +K+LLLG GESGKST +KQM+IIH
Sbjct: 1 MGCTLS--AEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHG 58
Query: 61 DGFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTI----LSTMCCF 116
G++ E+ F V N+ ++M+ ++ M L+I + NK +A+ + + + F
Sbjct: 59 SGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAF 118
Query: 117 DEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATD 176
+ + A+ +LW D G++ R EY+L+DS Y +++R+ D Y+P D
Sbjct: 119 ENPY------VDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQD 172
Query: 177 VLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMT 236
VLR RV T GIIE F L I MVDVGGQRS+RRKWI+CF++V +++++VALS YD
Sbjct: 173 VLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQV 232
Query: 237 LLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFK 296
L+E + NR++ES LF ++ +F+ +S ILFLNK DL EKI+YS HL Y ++
Sbjct: 233 LVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS--HLVDYFPEYD 290
Query: 297 GPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQV 356
GP D + FI F N +S K+IY HFT ATDT N++ VF AV D ++++NL++
Sbjct: 291 GPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEY 350
Query: 357 TLL 359
L+
Sbjct: 351 NLV 353
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 220/363 (60%), Gaps = 14/363 (3%)
Query: 1 MGACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHN 60
MG +S +E+ A RS ID+ L + + + +K+LLLG GESGKST +KQM+IIH
Sbjct: 3 MGCTLS--AEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHG 60
Query: 61 DGFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTI----LSTMCCF 116
G++ E+ F V N+ ++M+ ++ M L+I + NK +A+ + + + F
Sbjct: 61 SGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAF 120
Query: 117 DEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATD 176
+ + A+ +LW D G++ R EY+L+DS Y +++R+ D Y+P D
Sbjct: 121 ENPY------VDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQD 174
Query: 177 VLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMT 236
VLR RV T GIIE F L I MVDVGGQRS+RRKWI+CF++V +++++VALS YD
Sbjct: 175 VLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQV 234
Query: 237 LLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFK 296
L+E + NR++ES LF ++ +F+ +S ILFLNK DL EKI+YS HL Y ++
Sbjct: 235 LVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS--HLVDYFPEYD 292
Query: 297 GPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQV 356
GP D + FI F N +S K+IY HFT ATDT N++ VF AV D ++++NL++
Sbjct: 293 GPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEY 352
Query: 357 TLL 359
L+
Sbjct: 353 NLV 355
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 203/325 (62%), Gaps = 5/325 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH G++ EE + +K V N + S+ ++ MG L+I
Sbjct: 7 VKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 66
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ + + A+ + +E F M +++ + LW+D GV+ R EY+LNDSA
Sbjct: 67 DFGDSARADDARQLFVLAGAAEEGF-MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSA 125
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 126 AYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWI 185
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F + S ILFLNK D
Sbjct: 186 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 245
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 246 LFEEKIKKSPLTICY--PEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 302
Query: 335 SNVQTVFHAVMDLVIKINLQQVTLL 359
NVQ VF AV D++IK NL+ L
Sbjct: 303 KNVQFVFDAVTDVIIKNNLKDCGLF 327
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 203/325 (62%), Gaps = 5/325 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH G++ EE + +K V N + S+ ++ MG L+I
Sbjct: 4 VKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 63
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ + + A+ + +E F M +++ + LW+D GV+ R EY+LNDSA
Sbjct: 64 DFGDSARADDARQLFVLAGAAEEGF-MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSA 122
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 123 AYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWI 182
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F + S ILFLNK D
Sbjct: 183 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 242
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 243 LFEEKIKKSPLTICY--PEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 299
Query: 335 SNVQTVFHAVMDLVIKINLQQVTLL 359
NVQ VF AV D++IK NL+ L
Sbjct: 300 KNVQFVFDAVTDVIIKNNLKDCGLF 324
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 203/325 (62%), Gaps = 5/325 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH G++ EE + +K V N + S+ ++ MG L+I
Sbjct: 10 VKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 69
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ + + A+ + +E F M +++ + LW+D GV+ R EY+LNDSA
Sbjct: 70 DFGDSARADDARQLFVLAGAAEEGF-MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSA 128
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 129 AYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWI 188
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F + S ILFLNK D
Sbjct: 189 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 248
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 249 LFEEKIKKSPLTICY--PEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 305
Query: 335 SNVQTVFHAVMDLVIKINLQQVTLL 359
NVQ VF AV D++IK NL+ L
Sbjct: 306 KNVQFVFDAVTDVIIKNNLKDCGLF 330
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 203/325 (62%), Gaps = 5/325 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH G++ EE + +K V N + S+ ++ MG L+I
Sbjct: 9 VKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 68
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ + + A+ + +E F M +++ + LW+D GV+ R EY+LNDSA
Sbjct: 69 DFGDSARADDARQLFVLAGAAEEGF-MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSA 127
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 128 AYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWI 187
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F + S ILFLNK D
Sbjct: 188 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 247
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 248 LFEEKIKKSPLTICY--PEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 304
Query: 335 SNVQTVFHAVMDLVIKINLQQVTLL 359
NVQ VF AV D++IK NL+ L
Sbjct: 305 KNVQFVFDAVTDVIIKNNLKDCGLF 329
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 142/323 (43%), Positives = 204/323 (63%), Gaps = 3/323 (0%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH DGF+ E+++ +KP V N + S+ ++ M L +
Sbjct: 13 VKLLLLGAGESGKSTIVKQMKIIHEDGFSGEDVKQYKPVVYSNTIQSLAAIVRAMDTLGV 72
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ K +K + + ++ ++ +AM+ LW D G++ R EY+LNDSA
Sbjct: 73 EYGDKERKTDSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREYQLNDSA 132
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y ++++RI Y P D+LR RV+T GI+ET+F + DVGGQRS+R+KWI
Sbjct: 133 KYYLDSLDRIGAGDYQPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWI 192
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+DV A+++ VALSGYD L ED + NR+ ESL LF+ + NN++F + S ILFLNK D
Sbjct: 193 HCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKD 252
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS 335
LF EKI S L ++ G + D+ A +IQ +F +N + K IY H T ATDT+
Sbjct: 253 LFGEKIKKS--PLTICFPEYPGSNTYEDAAA-YIQTQFESKNRSPNKEIYCHMTCATDTN 309
Query: 336 NVQTVFHAVMDLVIKINLQQVTL 358
N+Q VF AV D++I NL+ L
Sbjct: 310 NIQVVFDAVTDIIIANNLRGCGL 332
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 278 bits (710), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 203/325 (62%), Gaps = 5/325 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH G++ EE + +K V N + S+ ++ MG L+I
Sbjct: 5 VKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 64
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ + + A+ + +E F M +++ + LW+D GV+ R EY+LNDSA
Sbjct: 65 DFGDSARADDARQLFVLAGAAEEGF-MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSA 123
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 124 AYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWI 183
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F + S ILFLNK D
Sbjct: 184 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 243
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 244 LFEEKIKKSPLTICY--PEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 300
Query: 335 SNVQTVFHAVMDLVIKINLQQVTLL 359
NVQ VF AV D++IK NL+ L
Sbjct: 301 KNVQFVFDAVTDVIIKNNLKDCGLF 325
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 278 bits (710), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 203/325 (62%), Gaps = 5/325 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH G++ EE + +K V N + S+ ++ MG L+I
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 62
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ + + A+ + +E F M +++ + LW+D GV+ R EY+LNDSA
Sbjct: 63 DFGDSARADDARQLFVLAGAAEEGF-MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSA 121
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 122 AYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWI 181
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F + S ILFLNK D
Sbjct: 182 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 241
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 242 LFEEKIKKSPLTICY--PEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 298
Query: 335 SNVQTVFHAVMDLVIKINLQQVTLL 359
NVQ VF AV D++IK NL+ L
Sbjct: 299 KNVQFVFDAVTDVIIKNNLKDCGLF 323
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 202/325 (62%), Gaps = 5/325 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH G++ EE + +K V N + S+ ++ MG L+I
Sbjct: 8 VKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 67
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ + + A+ + +E F M +++ + LW+D GV+ R EY LNDSA
Sbjct: 68 DFGDSARADDARQLFVLAGAAEEGF-MTAELAGVIKRLWKDSGVQACFNRSREYLLNDSA 126
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 127 AYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWI 186
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F + S ILFLNK D
Sbjct: 187 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 246
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 247 LFEEKIKKSPLTICY--PEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 303
Query: 335 SNVQTVFHAVMDLVIKINLQQVTLL 359
NVQ VF AV D++IK NL+ L
Sbjct: 304 KNVQFVFDAVTDVIIKNNLKDCGLF 328
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/325 (44%), Positives = 202/325 (62%), Gaps = 5/325 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGA ESGKST+VKQMKIIH G++ EE + +K V N + S+ ++ MG L+I
Sbjct: 5 VKLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 64
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ + + A+ + +E F M +++ + LW+D GV+ R EY+LNDSA
Sbjct: 65 DFGDSARADDARQLFVLAGAAEEGF-MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSA 123
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 124 AYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWI 183
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F + S ILFLNK D
Sbjct: 184 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 243
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 244 LFEEKIKKSPLTICY--PEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 300
Query: 335 SNVQTVFHAVMDLVIKINLQQVTLL 359
NVQ VF AV D++IK NL+ L
Sbjct: 301 KNVQFVFDAVTDVIIKNNLKDCGLF 325
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 275 bits (702), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 143/325 (44%), Positives = 202/325 (62%), Gaps = 5/325 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGA ESGKST+VKQMKIIH G++ EE + +K V N + S+ ++ MG L+I
Sbjct: 8 VKLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 67
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ + + A+ + +E F M +++ + LW+D GV+ R EY+LNDSA
Sbjct: 68 DFGDSARADDARQLFVLAGAAEEGF-MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSA 126
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 127 AYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWI 186
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F + S ILFLNK D
Sbjct: 187 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 246
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 247 LFEEKIKKSPLTICY--PEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 303
Query: 335 SNVQTVFHAVMDLVIKINLQQVTLL 359
NVQ VF AV D++IK NL+ L
Sbjct: 304 KNVQFVFDAVTDVIIKNNLKDCGLF 328
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 274 bits (701), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 141/316 (44%), Positives = 199/316 (62%), Gaps = 5/316 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH G++ EE + +K V N + S+ ++ MG L+I
Sbjct: 2 VKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 61
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ + + A+ + +E F M +++ + LW+D GV+ R EY+LNDSA
Sbjct: 62 DFGDSARADDARQLFVLAGAAEEGF-MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSA 120
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 121 AYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWI 180
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F + S ILFLNK D
Sbjct: 181 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 240
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT ATDT
Sbjct: 241 LFEEKIKKSPLTICY--PEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDT 297
Query: 335 SNVQTVFHAVMDLVIK 350
NVQ VF AV D++IK
Sbjct: 298 KNVQFVFDAVTDVIIK 313
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 274 bits (700), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 141/316 (44%), Positives = 199/316 (62%), Gaps = 5/316 (1%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST+VKQMKIIH G++ EE + +K V N + S+ ++ MG L+I
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKI 62
Query: 96 NLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSA 155
+ A + A+ + +E F M +++ + LW+D GV+ R EY+LNDSA
Sbjct: 63 DFGDAARADDARQLFVLAGAAEEGF-MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSA 121
Query: 156 LYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI 215
Y +++RI Y+P DVLR RV+T GI+ET+F + M DVGGQRS+R+KWI
Sbjct: 122 AYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWI 181
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F + S ILFLNK D
Sbjct: 182 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 241
Query: 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNSAKVIYPHFTTATDT 334
LF EKI S + Y ++ G + + A +IQ +F L K IY HFT +TDT
Sbjct: 242 LFEEKIKKSPLTICY--PEYAGSN-TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCSTDT 298
Query: 335 SNVQTVFHAVMDLVIK 350
NVQ VF AV D++IK
Sbjct: 299 KNVQFVFDAVTDVIIK 314
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 274 bits (700), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 145/325 (44%), Positives = 195/325 (60%), Gaps = 3/325 (0%)
Query: 35 VIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILR 94
+K+LLLGAGESGKST+VKQMKIIH DG++ EE F + N L S+ ++ M L
Sbjct: 3 TVKLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLN 62
Query: 95 INLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDS 154
I + ++ A+ ++ M EE M ++S + LW+D G++ R EY+LNDS
Sbjct: 63 IQYGDSARQDDARKLMH-MADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDS 121
Query: 155 ALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKW 214
A Y ++ER+ YVP DVLR+RV+T GIIET F + M DVGGQRS+R+KW
Sbjct: 122 AGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKW 181
Query: 215 IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274
I+CF+ V ++++ ALS YDM L+ED VNR+ ESL+LF + N+RYF S +LFLNK
Sbjct: 182 IHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLNKK 241
Query: 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDT 334
D+F EKI HL D+ GP+ D+G L K IY H T ATDT
Sbjct: 242 DVFSEKI--KKAHLSICFPDYNGPNTYEDAGNYIKVQFLELNMRRDVKEIYSHMTCATDT 299
Query: 335 SNVQTVFHAVMDLVIKINLQQVTLL 359
NV+ VF AV D++IK NL+ L
Sbjct: 300 QNVKFVFDAVTDIIIKENLKDCGLF 324
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 270 bits (689), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/359 (41%), Positives = 213/359 (59%), Gaps = 9/359 (2%)
Query: 1 MGACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHN 60
MGA S + ++ S E++K+L + + ++ +K+LLLGAGESGKST+VKQMKIIH
Sbjct: 7 MGAGASAE------EKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQMKIIHQ 60
Query: 61 DGFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEF 120
D ++ EE F + N L S+ ++ M L I + ++ A+ ++ M EE
Sbjct: 61 DPYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMH-MADTIEEG 119
Query: 121 QMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRA 180
M ++S + LW+D G++ R EY+LNDSA Y ++ER+ YVP DVLR+
Sbjct: 120 TMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRS 179
Query: 181 RVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLED 240
RV+T GIIET F + M DVGGQRS+R+KWI+CF+ V A+++ VALS YD+ L ED
Sbjct: 180 RVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 239
Query: 241 SSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDF 300
+NR+ ES++LF + NN++F + S ILFLNK DLF EKI S + Y ++ G +
Sbjct: 240 EEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSNT 297
Query: 301 DVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
++G L K IY H T ATDT NV+ VF AV D++IK NL+ L
Sbjct: 298 YEEAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGLF 356
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 268 bits (686), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 203/328 (61%), Gaps = 12/328 (3%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLG GESGKST +KQM+IIH G++ E+ F V N+ ++M+ ++ M L+I
Sbjct: 8 LKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKI 67
Query: 96 NLQSAKNKNYAKTI----LSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYEL 151
+ NK +A+ + + + F+ + A+ +LW D G++ R EY+L
Sbjct: 68 PYKYEHNKAHAQLVREVDVEKVSAFENPY------VDAIKSLWNDPGIQECYDRRREYQL 121
Query: 152 NDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQR 211
+DS Y +++R+ D Y+P DVLR RV T GIIE F L I MVDVGGQRS+R
Sbjct: 122 SDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 181
Query: 212 RKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFL 271
RKWI+CF++V +++++VALS YD L+E + NR++ES LF ++ +F+ +S ILFL
Sbjct: 182 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 241
Query: 272 NKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTA 331
NK DL EKI+YS HL Y ++ GP D + FI F N +S K+IY HFT A
Sbjct: 242 NKKDLLEEKIMYS--HLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 299
Query: 332 TDTSNVQTVFHAVMDLVIKINLQQVTLL 359
TDT N++ VF AV D ++++NL++ L+
Sbjct: 300 TDTENIRFVFAAVKDTILQLNLKEYNLV 327
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 265 bits (676), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 197/328 (60%), Gaps = 3/328 (0%)
Query: 32 EKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMG 91
+ +K+LLLGAGESGKST+VKQMKIIH DG++ EE F + N L S+ ++ M
Sbjct: 1 DARTVKLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMT 60
Query: 92 ILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYEL 151
L I + ++ A+ ++ M EE M ++S + LW+D G++ R EY+L
Sbjct: 61 TLNIQYGDSARQDDARKLMH-MADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQL 119
Query: 152 NDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQR 211
NDSA Y ++ER+ YVP DVLR+RV+T GIIET F + M DVGGQRS+R
Sbjct: 120 NDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSER 179
Query: 212 RKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFL 271
+KWI+CF+ V A+++ VALS YD+ L ED +NR+ ES+ LF+ + NN++F + S ILFL
Sbjct: 180 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 239
Query: 272 NKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTA 331
NK DLF EKI S + Y ++ G + ++G L K IY H T A
Sbjct: 240 NKKDLFEEKIKKSPLTICY--PEYAGSNTYEEAGNYIKVQFLELNMRRDVKEIYSHMTCA 297
Query: 332 TDTSNVQTVFHAVMDLVIKINLQQVTLL 359
TDT NV+ VF AV D++IK NL+ L
Sbjct: 298 TDTQNVKFVFDAVTDIIIKENLKDCGLF 325
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 259 bits (661), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 142/366 (38%), Positives = 220/366 (60%), Gaps = 16/366 (4%)
Query: 1 MGACISLDSEEIKAQRRSDEIDKQLTQLSLQE--KHVIKILLLGAGESGKSTLVKQMKII 58
MG +S +E+ A RS ID+ L + + + ++KILLLGAGESGKST +KQM+II
Sbjct: 1 MGCTLS--AEDKAAVERSKMIDRNLREDGERRAVRRLVKILLLGAGESGKSTFLKQMRII 58
Query: 59 HNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDE 118
H F ++ L F+ T+ DN+L + ++ L I Q ++N+ + +++ F+
Sbjct: 59 HGREFDQKALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSENEKHGMFLMA----FEN 114
Query: 119 EFQMLPDVST------AMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVP 172
+ + + +T A+ ALW+D G+R A +R E++L +S Y +N++RI L Y P
Sbjct: 115 KAGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFP 174
Query: 173 NATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSG 232
+ D+L AR T GI+E +F + + MVDVGGQRSQR+KW CFD + ++L++V+ S
Sbjct: 175 SKQDILLARKATKGIVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSE 234
Query: 233 YDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYL 292
YD L+ED NRL ES+N+FE +VNN+ F S ILFLNK DL EK+ ++ +
Sbjct: 235 YDQVLMEDRRTNRLVESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKV--KSVSIKKHF 292
Query: 293 SDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352
DFKG ++ ++ F + N +K ++ HFTTA DT N++ VFHAV D +++ N
Sbjct: 293 PDFKGDPHRLEDVQRYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTILQEN 352
Query: 353 LQQVTL 358
L+ + L
Sbjct: 353 LKDIML 358
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 258 bits (660), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/359 (40%), Positives = 204/359 (56%), Gaps = 9/359 (2%)
Query: 1 MGACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHN 60
MGA S + ++ S E++K+L + + ++ +K+LLLGAGESGKST+VKQ KIIH
Sbjct: 1 MGAGASAE------EKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQXKIIHQ 54
Query: 61 DGFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEF 120
DG++ EE F + N L S+ ++ L I + ++ A+ + EE
Sbjct: 55 DGYSLEECLEFIAIIYGNTLQSILAIVRAXTTLNIQYGDSARQDDARKLXHXADTI-EEG 113
Query: 121 QMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRA 180
+ S + LW+D G++ R EY+LNDSA Y ++ER+ YVP DVLR+
Sbjct: 114 TXPKEXSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRS 173
Query: 181 RVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLED 240
RV+T GIIET F + DVGGQRS+R+KWI+CF+ V A+++ VALS YD+ L ED
Sbjct: 174 RVKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 233
Query: 241 SSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDF 300
NR ES LF+ + NN++F + S ILFLNK DLF EKI S + Y ++ G +
Sbjct: 234 EEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSNT 291
Query: 301 DVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
++G L K IY H T ATDT NV+ VF AV D++IK NL+ L
Sbjct: 292 YEEAGNYIKVQFLELNXRRDVKEIYSHXTCATDTQNVKFVFDAVTDIIIKENLKDCGLF 350
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 248 bits (633), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 144/368 (39%), Positives = 213/368 (57%), Gaps = 21/368 (5%)
Query: 11 EIKAQRRSDE-IDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELE 69
E KAQR +++ I+KQL + + ++LLLGAGESGKST+VKQM+I+H +GF + +
Sbjct: 15 EEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGDSEK 74
Query: 70 SFK-PTVMDNLLSSMKYVLGGMG--ILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPDV 126
+ K + +NL +++ ++ M + + L + +N+ ILS M D F P+
Sbjct: 75 ATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPD--FDFPPEF 132
Query: 127 STAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNG 186
ALW+D GVR R EY+L D A Y + ++ I YVP+ D+LR RV T+G
Sbjct: 133 YEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSG 192
Query: 187 IIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRL 246
I ET F++ + +M DVGGQR +RRKWI CF+DV A+++VVA S Y+M + ED+ NRL
Sbjct: 193 IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL 252
Query: 247 DESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDF----------- 295
E+LNLF+ + NNR+ R S ILFLNK DL EK+L + Y +F
Sbjct: 253 QEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP 312
Query: 296 -KGPDFDVDSGALFIQHKF---ALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351
G D V FI+ +F + + + YPHFT A DT N++ VF+ D++ ++
Sbjct: 313 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM 372
Query: 352 NLQQVTLL 359
+L+Q LL
Sbjct: 373 HLRQYELL 380
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 247 bits (630), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 144/368 (39%), Positives = 213/368 (57%), Gaps = 21/368 (5%)
Query: 11 EIKAQRRSDE-IDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELE 69
E KAQR +++ I+KQL + + ++LLLGAGESGKST+VKQM+I+H +GF + +
Sbjct: 15 EEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGDGEK 74
Query: 70 SFK-PTVMDNLLSSMKYVLGGMG--ILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPDV 126
+ K + +NL +++ ++ M + + L + +N+ ILS M D F P+
Sbjct: 75 ATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPD--FDFPPEF 132
Query: 127 STAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNG 186
ALW+D GVR R EY+L D A Y + ++ I YVP+ D+LR RV T+G
Sbjct: 133 YEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSG 192
Query: 187 IIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRL 246
I ET F++ + +M DVGGQR +RRKWI CF+DV A+++VVA S Y+M + ED+ NRL
Sbjct: 193 IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL 252
Query: 247 DESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDF----------- 295
E+LNLF+ + NNR+ R S ILFLNK DL EK+L + Y +F
Sbjct: 253 QEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP 312
Query: 296 -KGPDFDVDSGALFIQHKF---ALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351
G D V FI+ +F + + + YPHFT A DT N++ VF+ D++ ++
Sbjct: 313 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM 372
Query: 352 NLQQVTLL 359
+L+Q LL
Sbjct: 373 HLRQYELL 380
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 195/339 (57%), Gaps = 26/339 (7%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
+K+LLLGAGESGKST +KQM+IIH F + E F+PT+ N++ M+ ++ L I
Sbjct: 13 VKLLLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHI 72
Query: 96 NLQSAKNKNYAKTILSTMCCFDEE--------------FQMLPDVSTAMLALWQDRGVRL 141
KN+ + +++ FD Q LP A+ ALW+D G++
Sbjct: 73 PWGDNKNQLHGDKLMA----FDTRAPMAAQGMVETRVFLQYLP----AIRALWEDSGIQN 124
Query: 142 AVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNM 201
A R E++L +S Y +N++++ Y+P+ D+L AR T GI ET+F + M
Sbjct: 125 AYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHETHFTFKDLHFKM 184
Query: 202 VDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261
DVGGQRS+R+KW CF+ V A+++ VALS YD L+ED NR+ ES+ LF+ + NN++
Sbjct: 185 FDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNKW 244
Query: 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA-LRNHNS 320
F + S ILFLNK DLF EKI S + Y ++ G + + A +IQ +F L
Sbjct: 245 FTDTSIILFLNKKDLFEEKIKKSPLTICY--PEYAGSN-TYEEAAAYIQCQFEDLNKRKD 301
Query: 321 AKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
K IY HFT ATDT NVQ VF AV D++IK NL+ L
Sbjct: 302 TKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 340
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 243 bits (621), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 145/382 (37%), Positives = 211/382 (55%), Gaps = 35/382 (9%)
Query: 11 EIKAQRRSDE-IDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELE 69
E KAQR +++ I+KQL + + ++LLLGAGESGKST+VKQM+I+H +GF E
Sbjct: 15 EEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGGEGG 74
Query: 70 SFKPT---------------VMDNLLSSMKYVLGGMG--ILRINLQSAKNKNYAKTILST 112
P + +NL +++ ++ M + + L + +N+ ILS
Sbjct: 75 EEDPNAKSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSV 134
Query: 113 MCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVP 172
M D F P+ ALW+D GVR R EY+L D A Y + ++ I YVP
Sbjct: 135 MNVPD--FDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVP 192
Query: 173 NATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSG 232
+ D+LR RV T+GI ET F++ + +M DVGGQR +RRKWI CF+DV A+++VVA S
Sbjct: 193 SDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSS 252
Query: 233 YDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYL 292
Y+M + ED+ NRL E+LNLF+ + NNR+ R S ILFLNK DL EK+L + Y
Sbjct: 253 YNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYF 312
Query: 293 SDF------------KGPDFDVDSGALFIQHKF---ALRNHNSAKVIYPHFTTATDTSNV 337
+F G D V FI+ +F + + + YPHFT A DT N+
Sbjct: 313 PEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI 372
Query: 338 QTVFHAVMDLVIKINLQQVTLL 359
+ VF+ D++ +++L+Q LL
Sbjct: 373 RRVFNDCRDIIQRMHLRQYELL 394
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 213/382 (55%), Gaps = 35/382 (9%)
Query: 11 EIKAQRRSDE-IDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGF------ 63
E KAQR +++ I+KQL + + ++LLLGAGESGKST+VKQM+I+H +GF
Sbjct: 15 EEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGE 74
Query: 64 -----TREELESFKPT----VMDNLLSSMKYVLGGMG--ILRINLQSAKNKNYAKTILST 112
R + K T + +NL +++ ++ M + + L + +N+ ILS
Sbjct: 75 EDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSV 134
Query: 113 MCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVP 172
M D F P+ ALW+D GVR R EY+L D A Y + ++ I YVP
Sbjct: 135 MNVPD--FDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVP 192
Query: 173 NATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSG 232
+ D+LR RV T+GI ET F++ + +M DVGGQR +RRKWI CF+DV A+++VVA S
Sbjct: 193 SDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSS 252
Query: 233 YDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYL 292
Y+M + ED+ NRL E+LNLF+ + NNR+ R S ILFLNK DL EK+L + Y
Sbjct: 253 YNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYF 312
Query: 293 SDF------------KGPDFDVDSGALFIQHKF---ALRNHNSAKVIYPHFTTATDTSNV 337
+F G D V FI+ +F + + + YPHFT A DT N+
Sbjct: 313 PEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI 372
Query: 338 QTVFHAVMDLVIKINLQQVTLL 359
+ VF+ D++ +++L+Q LL
Sbjct: 373 RRVFNDCRDIIQRMHLRQYELL 394
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 213/382 (55%), Gaps = 35/382 (9%)
Query: 11 EIKAQRRSDE-IDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGF------ 63
E KAQR +++ I+KQL + + ++LLLGAGESGKST+VKQM+I+H +GF
Sbjct: 15 EEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGE 74
Query: 64 -----TREELESFKPT----VMDNLLSSMKYVLGGMG--ILRINLQSAKNKNYAKTILST 112
R + K T + +NL +++ ++ M + + L + +N+ ILS
Sbjct: 75 EDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSV 134
Query: 113 MCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVP 172
M D F P+ ALW+D GVR R EY+L D A Y + ++ I YVP
Sbjct: 135 MNVPD--FDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVP 192
Query: 173 NATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSG 232
+ D+LR RV T+GI ET F++ + +M DVGGQR +RRKWI CF+DV A+++VVA S
Sbjct: 193 SDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSS 252
Query: 233 YDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYL 292
Y+M + ED+ NRL E+LNLF+ + NNR+ R S ILFLNK DL EK+L + Y
Sbjct: 253 YNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYF 312
Query: 293 SDF------------KGPDFDVDSGALFIQHKF---ALRNHNSAKVIYPHFTTATDTSNV 337
+F G D V FI+ +F + + + YPHFT A DT N+
Sbjct: 313 PEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI 372
Query: 338 QTVFHAVMDLVIKINLQQVTLL 359
+ VF+ D++ +++L+Q LL
Sbjct: 373 RRVFNDCRDIIQRMHLRQYELL 394
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 240 bits (613), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 207/373 (55%), Gaps = 27/373 (7%)
Query: 1 MGACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHN 60
MG +S +E+ A RS ID+ L + + ++KILLLGAGESGKST +KQM+IIH
Sbjct: 1 MGCTLS--AEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHG 58
Query: 61 DGFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEE- 119
F + E F+PT+ N++ M+ ++ L I KN+ + +++ FD
Sbjct: 59 QDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMA----FDTRA 114
Query: 120 -------------FQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERIC 166
Q LP A+ ALW+D G++ A R E++L +S Y +N++++
Sbjct: 115 PMAAQGMVETRVFLQYLP----AIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLG 170
Query: 167 DLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLY 226
Y+P+ D+L AR T GI E +F + MVDVGGQRS+R++W CFD V ++L+
Sbjct: 171 VPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF 230
Query: 227 VVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGR 286
+V+ S +D L+ED NRL ESLN+FE +VNNR F S ILFLNK DL EK+
Sbjct: 231 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVS- 289
Query: 287 HLRYYLSDFKG-PDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345
++ Y +F+G P D ++ R + +Y HFTTA +T N++ VF V
Sbjct: 290 -IKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK 348
Query: 346 DLVIKINLQQVTL 358
D ++ NL+Q+ L
Sbjct: 349 DTILHDNLKQLML 361
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 192/341 (56%), Gaps = 25/341 (7%)
Query: 33 KHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGI 92
K ++KILLLGAGESGKST +KQM+IIH F + E F+PT+ N++ M+ ++
Sbjct: 7 KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREK 66
Query: 93 LRINLQSAKNKNYAKTILSTMCCFDEE--------------FQMLPDVSTAMLALWQDRG 138
L I KN+ + +++ FD Q LP A+ ALW+D G
Sbjct: 67 LHIPWGDNKNQLHGDKLMA----FDTRAPMAAQGMVETRVFLQYLP----AIRALWEDSG 118
Query: 139 VRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESI 198
++ A R E++L +S Y +N++++ Y+P+ D+L AR T GI E +F +
Sbjct: 119 IQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVP 178
Query: 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258
MVDVGGQRS+R++W CFD V ++L++V+ S +D L+ED NRL ESLN+FE +VN
Sbjct: 179 FKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 238
Query: 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKG-PDFDVDSGALFIQHKFALRN 317
NR F S ILFLNK DL EK+ ++ Y +F+G P D ++ R
Sbjct: 239 NRVFSNVSIILFLNKTDLLEEKVQVVS--IKDYFLEFEGDPHCLRDVQKFLVECFRGKRR 296
Query: 318 HNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTL 358
+ +Y HFTTA +T N++ VF V D ++ NL+Q+ L
Sbjct: 297 DQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLML 337
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/341 (37%), Positives = 191/341 (56%), Gaps = 25/341 (7%)
Query: 33 KHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGI 92
K ++KILLLGAGESGKST +KQM+IIH F + E F+PT+ N++ M+ ++
Sbjct: 7 KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREK 66
Query: 93 LRINLQSAKNKNYAKTILSTMCCFDEE--------------FQMLPDVSTAMLALWQDRG 138
L I KN+ + +++ FD Q LP A+ ALW+D G
Sbjct: 67 LHIPWGDNKNQLHGDKLMA----FDTRAPMAAQGMVETRVFLQYLP----AIRALWEDSG 118
Query: 139 VRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESI 198
++ A R E++L +S Y +N++++ Y+P+ D+L AR T GI E +F +
Sbjct: 119 IQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVP 178
Query: 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258
MVDVGG RS+R++W CFD V ++L++V+ S +D L+ED NRL ESLN+FE +VN
Sbjct: 179 FKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 238
Query: 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKG-PDFDVDSGALFIQHKFALRN 317
NR F S ILFLNK DL EK+ ++ Y +F+G P D ++ R
Sbjct: 239 NRVFSNVSIILFLNKTDLLEEKVQVVS--IKDYFLEFEGDPHCLRDVQKFLVECFRGKRR 296
Query: 318 HNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTL 358
+ +Y HFTTA +T N++ VF V D ++ NL+Q+ L
Sbjct: 297 DQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLML 337
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 126/351 (35%), Positives = 196/351 (55%), Gaps = 29/351 (8%)
Query: 34 HVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGIL 93
H+ K+LLLGAGESGKST+ KQ+K++ GF EL+S+ P + N+ ++K + G
Sbjct: 8 HIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEF 67
Query: 94 RIN-LQSAKNKNYAKTI-----LSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGY 147
N SAK +++I LS + + ++ D++ + LW+D ++ ARG
Sbjct: 68 AQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETXARGN 127
Query: 148 EYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFR-LGES-----IVNM 201
E ++ D YL EN++R+ D+ Y+P DVL ARVRT G++E F +GE+ + +
Sbjct: 128 ELQVPDXTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRL 187
Query: 202 VDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261
DVGGQR++RRKWI+ F+ V AV++ A+S YD TL ED NR+ E+ LF+ V+
Sbjct: 188 FDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 247
Query: 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKF-------- 313
F + SF+LFLNKFD+F +K+L ++ + D++ V SG I+H +
Sbjct: 248 FEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQ----PVSSGKQEIEHAYEFVKKKFE 303
Query: 314 ALRNHNSA-----KVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
L N+A +V + TTA D V+ F V + + + NL + LL
Sbjct: 304 ELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 354
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/333 (32%), Positives = 178/333 (53%), Gaps = 28/333 (8%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95
I + LLG+GESGKST+ KQ+KI+ GF +E + K ++ N+++ + ++ IL
Sbjct: 6 ITVXLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCXRTLIEQSAILNH 65
Query: 96 NLQ-SAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDS 154
+ K+K + T+ P++ + ALW D G++ +++L D
Sbjct: 66 PXKYQPKSKEFTTEDPVTL-------PFSPELVGDVEALWADEGIQATYEESAKFQLPDC 118
Query: 155 ALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKW 214
A YLFEN++RI YVP D++ R +T GI E +F + + +++DVGGQRS+R+ W
Sbjct: 119 AKYLFENVKRIAXEDYVPTEEDLIHNRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXW 178
Query: 215 IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274
+ F DV ++V +L+ YD L ED + +RL ES+ +F+ + N + + A ++FLNK
Sbjct: 179 VSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXTNEFLKGAVKLIFLNKX 238
Query: 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALR------NHNSA------- 321
DLF EK+ + L ++ G D V GA +IQ F + N + A
Sbjct: 239 DLFEEKL--TKVPLNTIFPEYTGGDNAV-XGAQYIQQLFTGKLQTEEXNISGADGTANIE 295
Query: 322 ----KVIYPHFTTATDTSNVQTVFHAVMDLVIK 350
+ +Y + T ATD SN++ VF +D++ K
Sbjct: 296 GAVNEKVYTNPTNATDGSNIKRVFXLAVDVIXK 328
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259
N+ DVGGQ R W + + + +++VV + D R+DE+ +++N+
Sbjct: 369 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIIND 418
Query: 260 RYFREASFILFLNKFDL 276
R R+A ++F NK DL
Sbjct: 419 REMRDAIILIFANKQDL 435
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259
N+ DVGGQ R W + + + +++VV + D R+DE+ +++N+
Sbjct: 47 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIIND 96
Query: 260 RYFREASFILFLNKFDL 276
R R+A ++F NK DL
Sbjct: 97 REMRDAIILIFANKQDL 113
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259
N+ DVGGQ R W + + + +++VV + D R+DE+ +++N+
Sbjct: 60 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIIND 109
Query: 260 RYFREASFILFLNKFDL 276
R R+A ++F NK DL
Sbjct: 110 REMRDAIILIFANKQDL 126
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259
N+ DVGGQ R W + + + +++VV + D R+DE+ +++N+
Sbjct: 59 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIIND 108
Query: 260 RYFREASFILFLNKFDL 276
R R+A ++F NK DL
Sbjct: 109 REMRDAIILIFANKQDL 125
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259
N+ DVGGQ R W + + + +++VV + D R+DE+ +++N+
Sbjct: 47 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIIND 96
Query: 260 RYFREASFILFLNKFDL 276
R R+A ++F NK DL
Sbjct: 97 REMRDAIILIFANKQDL 113
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259
N+ DVGGQ R W + + + +++VV + D R+DE+ +++N+
Sbjct: 47 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIIND 96
Query: 260 RYFREASFILFLNKFDL 276
R R+A ++F NK DL
Sbjct: 97 REXRDAIILIFANKQDL 113
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259
N+ DVGG R W + + + +++VV + D R+DE+ +++N+
Sbjct: 49 NVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIIND 98
Query: 260 RYFREASFILFLNKFDL 276
R R+A ++F NK DL
Sbjct: 99 REMRDAIILIFANKQDL 115
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259
N+ DVGG R W + + + +++VV + D R+DE+ +++N+
Sbjct: 50 NVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIIND 99
Query: 260 RYFREASFILFLNKFDL 276
R R+A ++F NK DL
Sbjct: 100 REMRDAIILIFANKQDL 116
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259
N+ DVGG R W + + + +++VV + D R+DE+ +++N+
Sbjct: 60 NVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRD----------RIDEARQELHRIIND 109
Query: 260 RYFREASFILFLNKFDL 276
R R+A ++F NK DL
Sbjct: 110 REMRDAIILIFANKQDL 126
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGGQ R W + + + + V++VV + + +R+ E+ + ++++N
Sbjct: 50 DVGGQDRIRSLWRHYYRNTEGVIFVV----------DSNDRSRIGEAREVMQRMLNEDEL 99
Query: 263 REASFILFLNKFDL 276
R A++++F NK DL
Sbjct: 100 RNAAWLVFANKQDL 113
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 10/74 (13%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGGQ R W + + + + V++VV + + +R+ E+ + ++++N
Sbjct: 67 DVGGQDRIRSLWRHYYRNTEGVIFVV----------DSNDRSRIGEAREVMQRMLNEDEL 116
Query: 263 REASFILFLNKFDL 276
R A++++F NK DL
Sbjct: 117 RNAAWLVFANKQDL 130
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGGQ R W + + + +A+++VV + + +R+ E+ +++N
Sbjct: 67 DVGGQDKIRPLWRHYYQNTQAIIFVV----------DSNDRDRIGEAREELMKMLNEDEM 116
Query: 263 REASFILFLNKFDL 276
R A ++F NK DL
Sbjct: 117 RNAILLVFANKHDL 130
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGGQ R W + F + + +++VV + + R+ ES + ++++
Sbjct: 79 DVGGQDKIRPLWRHYFQNTQGLIFVV----------DSNDRERVQESADELQKMLQEDEL 128
Query: 263 REASFILFLNKFDL 276
R+A ++F NK D+
Sbjct: 129 RDAVLLVFANKQDM 142
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGGQ R W + F + + +++VV + + +R+ E+ + +++N
Sbjct: 70 DVGGQDKIRPLWRHYFQNTQGLIFVV----------DSNDRDRVVEARDELHRMLNEDEL 119
Query: 263 REASFILFLNKFDL 276
R+A ++F NK DL
Sbjct: 120 RDAVLLVFANKQDL 133
>pdb|1V6T|A Chain A, Crystal Structure Of Lactam Utilization Protein From
Pyrococcus Horikoshii Ot3
Length = 255
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 33/151 (21%)
Query: 101 KNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFE 160
K ++ A+ ++ + FD++ ++ ++ + + ++ G+++A
Sbjct: 120 KEEDLARAVIEGILDFDKDLILVTLSNSRVADIAEEMGLKVA------------------ 161
Query: 161 NMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWI----- 215
E D Y P+ T L R R +IE + E +++MV GG R+ +W+
Sbjct: 162 -HEVFADRAYNPDGT--LVPRGRPGAVIEDKEEIAERVISMVKDGGIRAINGEWVDLKVD 218
Query: 216 -YCF--DDVKAVLYVVALSGYDMTLLEDSSV 243
C D+ KA V ++ Y +LE+ V
Sbjct: 219 TICVHGDNPKA----VEITSYIRKVLEEEGV 245
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGGQ R W + + + + V++VV + + +R+ E+ + ++++N
Sbjct: 67 DVGGQDRIRSLWRHYYCNTEGVIFVV----------DSNDRSRIGEAREVMQRMLNEDEL 116
Query: 263 REASFILFLNKFDL 276
A++++F NK DL
Sbjct: 117 CNAAWLVFANKQDL 130
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGGQ R W + F + + +++VV + + R++E+ +++
Sbjct: 50 DVGGQDKIRPLWRHYFQNTQGLIFVV----------DSNDRERVNEAREELMRMLAEDEL 99
Query: 263 REASFILFLNKFDL--------FREKI-LYSGRHLRYYL 292
R+A ++F NK DL +K+ L+S RH +Y+
Sbjct: 100 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 138
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258
+N+ DVGGQ+S R W F+ +++VV + + R+ + + ++
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRMQDCQRELQSLLV 113
Query: 259 NRYFREASFILFLNKFDL 276
A+ ++F NK DL
Sbjct: 114 EERLAGATLLIFANKQDL 131
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258
+N+ DVGGQ+S R W F+ +++VV + + R+ + + ++
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRMQDCQRELQSLLV 111
Query: 259 NRYFREASFILFLNKFDL 276
A+ ++F NK DL
Sbjct: 112 EERLAGATLLIFANKQDL 129
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258
+N+ DVGGQ+S R W F+ +++VV + + R+ + + ++
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRMQDCQRELQSLLV 113
Query: 259 NRYFREASFILFLNKFDL 276
A+ ++F NK DL
Sbjct: 114 EERLAGATLLIFANKQDL 131
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGGQ R W + + + +++VV + + R+D++ +++N
Sbjct: 67 DVGGQDKIRPLWRHYYSNTDGLIFVV----------DSNDRERIDDAREELHRMINEEEL 116
Query: 263 REASFILFLNKFDL 276
++A ++F NK DL
Sbjct: 117 KDAIILVFANKQDL 130
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGGQ R W + F + + +++VV + + R++E+ +++
Sbjct: 67 DVGGQDKIRPLWRHYFQNTQGLIFVV----------DSNDRERVNEAREELMRMLAEDEL 116
Query: 263 REASFILFLNKFDL--------FREKI-LYSGRHLRYYL 292
R+A ++F NK DL +K+ L+S RH +Y+
Sbjct: 117 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 155
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGGQ R W + F + + +++VV + + R++E+ +++
Sbjct: 66 DVGGQDKIRPLWRHYFQNTQGLIFVV----------DSNDRERVNEAREELMRMLAEDEL 115
Query: 263 REASFILFLNKFDL--------FREKI-LYSGRHLRYYL 292
R+A ++F NK DL +K+ L+S RH +Y+
Sbjct: 116 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 154
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258
+N+ D+GGQ S R W + D AV++VV + + +R+ + ++
Sbjct: 64 LNVWDLGGQTSIRPYWRCYYADTAAVIFVV----------DSTDKDRMSTASKELHLMLQ 113
Query: 259 NRYFREASFILFLNKFD 275
++A+ ++F NK D
Sbjct: 114 EEELQDAALLVFANKQD 130
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGGQ R W + F + + +++VV + + R++E+ +++
Sbjct: 215 DVGGQDKIRPLWRHYFQNTQGLIFVV----------DSNDRERVNEAREELMRMLAEDEL 264
Query: 263 REASFILFLNKFDL--------FREKI-LYSGRHLRYYL 292
R+A ++F NK DL +K+ L+S RH +Y+
Sbjct: 265 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 303
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
D+GGQ R W F D AV+YVV + + +R+ + + +++
Sbjct: 72 DLGGQTGVRPYWRCYFSDTDAVIYVV----------DSTDRDRMGVAKHELYALLDEDEL 121
Query: 263 REASFILFLNKFDL 276
R++ ++F NK DL
Sbjct: 122 RKSLLLIFANKQDL 135
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 185 NGIIETNFRLG----ESIVN-----MVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDM 235
N ++ T+ +G E ++N M D+GGQ S R W + + + V+ VV D
Sbjct: 45 NEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV-----DS 99
Query: 236 TLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276
T E SV R + +++ + R+A ++F NK D+
Sbjct: 100 TDRERISVTREE-----LYKMLAHEDLRKAGLLIFANKQDV 135
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 185 NGIIETNFRLG----ESIVN-----MVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDM 235
N ++ T+ +G E ++N M D+GGQ S R W + + + V+ VV D
Sbjct: 44 NEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV-----DS 98
Query: 236 TLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276
T E SV R + +++ + R+A ++F NK D+
Sbjct: 99 TDRERISVTREE-----LYKMLAHEDLRKAGLLIFANKQDV 134
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGGQ R W + F + + +++VV + + R+ E + ++++
Sbjct: 67 DVGGQDRIRPLWKHYFQNTQGLIFVV----------DSNDRERIQEVADELQKMLLVDEL 116
Query: 263 REASFILFLNKFDL 276
R+A +LF NK DL
Sbjct: 117 RDAVLLLFANKQDL 130
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258
+N+ DVGGQ+S R W F+ +++VV + + R + + ++
Sbjct: 64 LNIWDVGGQKSLRSYWRNYFESTDGLIWVV----------DSADRQRXQDCQRELQSLLV 113
Query: 259 NRYFREASFILFLNKFDL 276
A+ ++F NK DL
Sbjct: 114 EERLAGATLLIFANKQDL 131
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|C Chain C, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 373
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 267 FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYP 326
+L LN+F R I S + + L DF D + +AL NH S V Y
Sbjct: 270 LVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNH-SGSVHYG 328
Query: 327 HFTTATDTSNVQTVFHAVMD 346
H+T QT +H D
Sbjct: 329 HYTA---LCRCQTGWHVYND 345
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|C Chain C, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|E Chain E, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|G Chain G, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
Length = 355
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 267 FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYP 326
+L LN+F R I S + + L DF D + +AL NH S V Y
Sbjct: 251 LVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNH-SGSVHYG 309
Query: 327 HFTTATDTSNVQTVFHAVMD 346
H+T QT +H D
Sbjct: 310 HYTA---LCRCQTGWHVYND 326
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 185 NGIIETNFRLG----ESIVN-----MVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDM 235
N ++ T+ +G E ++N M D+GGQ S R W + + + V+ VV D
Sbjct: 39 NEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV-----DS 93
Query: 236 TLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276
T E SV R + +++ + R+A ++F NK D+
Sbjct: 94 TDRERISVTREE-----LYKMLAHEDLRKAGLLIFANKQDV 129
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 185 NGIIETNFRLG----ESIVN-----MVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDM 235
N ++ T+ +G E ++N M D+GGQ S R W + + + V+ VV D
Sbjct: 39 NEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV-----DS 93
Query: 236 TLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276
T E SV R + +++ + R+A ++F NK D+
Sbjct: 94 TDRERISVTREE-----LYKMLAHEDLRKAGLLIFANKQDV 129
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|E Chain E, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 370
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 267 FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYP 326
+L LN+F R I S + + L DF D + +AL NH S V Y
Sbjct: 264 LVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAGSPVYQLYALCNH-SGSVHYG 322
Query: 327 HFTTATDTSNVQTVFHAVMD 346
H+T QT +H D
Sbjct: 323 HYTA---LCRCQTGWHVYND 339
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
D+GGQ S R W + + AV+YVV + +R+ S + ++
Sbjct: 52 DLGGQTSIRPYWRCYYSNTDAVIYVV----------DSCDRDRIGISKSELVAMLEEEEL 101
Query: 263 REASFILFLNKFDL 276
R+A ++F NK D+
Sbjct: 102 RKAILVVFANKQDM 115
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
D+GG RR W F +V ++++V + + R DE+ + + N
Sbjct: 51 DLGGHIQARRLWKDYFPEVNGIVFLV----------DAADPERFDEARVELDALFNIAEL 100
Query: 263 REASFILFLNKFD 275
++ F++ NK D
Sbjct: 101 KDVPFVILGNKID 113
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 19/99 (19%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
DVGG R W + F + + +++VV + + R++E+ +++
Sbjct: 52 DVGGLDKIRPLWRHYFQNTQGLIFVV----------DSNDRERVNEAREELMRMLAEDEL 101
Query: 263 REASFILFLNKFDL--------FREKI-LYSGRHLRYYL 292
R+A ++F NK DL +K+ L+S RH +Y+
Sbjct: 102 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI 140
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262
D+GG RR W F +V ++++V + + R DE+ + + N
Sbjct: 73 DLGGHIQARRLWKDYFPEVNGIVFLV----------DAADPERFDEARVELDALFNIAEL 122
Query: 263 REASFILFLNKFD 275
++ F++ NK D
Sbjct: 123 KDVPFVILGNKID 135
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 25 LTQLSLQEKHVIKILLLGAGESGKSTLVKQMK------IIHNDGFTREELES--FKPTVM 76
L +L ++ILLLG +GK+TL+KQ+ I GF + ++S FK V
Sbjct: 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVW 65
Query: 77 D 77
D
Sbjct: 66 D 66
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVV 228
+N+ D+GGQR R W F++ ++YV+
Sbjct: 62 LNVWDIGGQRKIRPYWRSYFENTDILIYVI 91
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
Length = 189
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 25 LTQLSLQEKHVIKILLLGAGESGKSTLVKQMK------IIHNDGFTREELES--FKPTVM 76
L +L ++ILLLG +GK+TL+KQ+ I GF + ++S FK V
Sbjct: 7 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVW 66
Query: 77 D 77
D
Sbjct: 67 D 67
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVV 228
+N+ D+GGQR R W F++ ++YV+
Sbjct: 63 LNVWDIGGQRKIRPYWRSYFENTDILIYVI 92
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 165 ICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAV 224
I +K +++ + A V N +ET F G + D+GG + R W +D++ AV
Sbjct: 34 INQVKPAQSSSKHITATVGYN--VET-FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90
Query: 225 LYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275
++VV S + + S + + + ++ ++ F+ F NK D
Sbjct: 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGG---GRVPFLFFANKMD 138
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 36 IKILLLGAGESGKSTLVKQMK------IIHNDGFTREELES--FKPTVMD 77
++ILLLG +GK+TL+KQ+ I GF + ++S FK V D
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWD 54
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVV 228
+N+ D+GGQR R W F++ ++YV+
Sbjct: 50 LNVWDIGGQRKIRPYWRSYFENTDILIYVI 79
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 36 IKILLLGAGESGKSTLVKQMK------IIHNDGFTREELES--FKPTVMD 77
++ILLLG +GK+TL+KQ+ I GF + ++S FK V D
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWD 54
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 203 DVGGQRS---QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259
DVGG + + I +D + +L AL G D+T++ + + + ES L QV+
Sbjct: 241 DVGGGIGVSYENEETIKLYDYAQGILN--ALQGLDLTIICEPGRSIVAESGELITQVLYE 298
Query: 260 RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKG 297
+ + F++ + F LY +H ++ KG
Sbjct: 299 KKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITPSKG 336
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 203 DVGGQRS---QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259
DVGG + + I +D + +L AL G D+T++ + + + ES L QV+
Sbjct: 241 DVGGGIGVSYENEETIKLYDYAQGILN--ALQGLDLTIICEPGRSIVAESGELITQVLYE 298
Query: 260 RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKG 297
+ + F++ + F LY +H ++ KG
Sbjct: 299 KKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITPSKG 336
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 112 TMCCFDEEFQ-MLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFE--NMERICDL 168
T+ F E F +L ++ A++ +WQ+R A+ EYE +Y + +++RI
Sbjct: 84 TITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKAR 143
Query: 169 KYVPN------ATDVLRARVRTNGIIETNFRLGESIVN 200
VP D + A +R I T R+ +SI+
Sbjct: 144 DIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILT 181
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 112 TMCCFDEEFQ-MLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFE--NMERICDL 168
T+ F E F +L ++ A++ +WQ+R A+ EYE +Y + +++RI
Sbjct: 85 TITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKAR 144
Query: 169 KYVPN------ATDVLRARVRTNGIIETNFRLGESIVN 200
VP D + A +R I T R+ +SI+
Sbjct: 145 DIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILT 182
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 112 TMCCFDEEFQ-MLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFE--NMERICDL 168
T+ F E F +L ++ A++ +WQ+R A+ EYE +Y + +++RI
Sbjct: 84 TITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKAR 143
Query: 169 KYVPN------ATDVLRARVRTNGIIETNFRLGESIVN 200
VP D + A +R I T R+ +SI+
Sbjct: 144 DIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILT 181
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 37 KILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRIN 96
K++++G+G GKS L Q E +E ++PT D+ K VL G +
Sbjct: 6 KVIMVGSGGVGKSALTLQF-------MYDEFVEDYEPTKADSY--RKKVVLDGEEVQIDI 56
Query: 97 LQSAKNKNYA-------KTILSTMCCFD----EEFQMLPDVSTAMLALWQDRGV 139
L +A ++YA ++ +C F E F D +L + +D V
Sbjct: 57 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 110
>pdb|3ENO|A Chain A, Crystal Structure Of Pyrococcus Furiosus Pcc1 In Complex
With Thermoplasma Acidophilum Kae1
pdb|3ENO|B Chain B, Crystal Structure Of Pyrococcus Furiosus Pcc1 In Complex
With Thermoplasma Acidophilum Kae1
Length = 334
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 149 YELNDSAL-YLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQ 207
Y + ++A L E +ER YV ++L A G + N RL + + NM G
Sbjct: 227 YSIQETAFAMLVEVLERAL---YVSGKDEILMA-----GGVALNRRLRDMVTNMAREAGI 278
Query: 208 RSQRRKWIYCFDDVKAVLYVVAL---SGYDMTLLEDSSVN---RLDE 248
RS YC D+ + L SG M+ +E+++VN R+DE
Sbjct: 279 RSYLTDREYCMDNGIMIAQAALLMYKSGVRMS-VEETAVNPRFRIDE 324
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 112 TMCCFDEEFQ-MLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFE--NMERICDL 168
T+ F E F +L ++ A++ +WQ+R A+ EYE +Y + +++RI
Sbjct: 84 TVTAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKAR 143
Query: 169 KYVPN------ATDVLRARVRTNGIIETNFRLGESIVN 200
VP D + A +R I T R+ +SI+
Sbjct: 144 DIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILT 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,763,854
Number of Sequences: 62578
Number of extensions: 388104
Number of successful extensions: 1383
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1185
Number of HSP's gapped (non-prelim): 135
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)