Query psy14891
Match_columns 359
No_of_seqs 310 out of 2331
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 23:28:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0082|consensus 100.0 1E-100 2E-105 718.6 30.1 354 1-359 1-354 (354)
2 KOG0085|consensus 100.0 2E-99 4E-104 658.7 16.4 353 1-359 7-359 (359)
3 KOG0099|consensus 100.0 1E-88 2.3E-93 600.4 22.7 357 1-359 1-379 (379)
4 smart00275 G_alpha G protein a 100.0 5.4E-86 1.2E-90 632.2 32.1 339 16-357 2-342 (342)
5 cd00066 G-alpha G protein alph 100.0 4.3E-82 9.2E-87 600.9 30.1 317 36-355 1-317 (317)
6 PF00503 G-alpha: G-protein al 100.0 7.8E-80 1.7E-84 602.4 30.0 337 10-348 33-389 (389)
7 KOG0084|consensus 99.9 2.8E-27 6.1E-32 202.6 15.0 132 182-352 39-175 (205)
8 KOG0092|consensus 99.9 7.3E-27 1.6E-31 199.4 15.5 131 182-351 35-169 (200)
9 KOG0078|consensus 99.9 5.7E-26 1.2E-30 197.3 14.9 131 182-351 42-176 (207)
10 KOG0086|consensus 99.9 4.2E-25 9.2E-30 181.1 13.3 130 183-351 40-173 (214)
11 PF00025 Arf: ADP-ribosylation 99.9 8.4E-24 1.8E-28 184.7 18.8 133 182-348 43-175 (175)
12 PLN00223 ADP-ribosylation fact 99.9 4.8E-24 1E-28 187.3 17.0 134 183-351 47-180 (181)
13 cd04120 Rab12 Rab12 subfamily. 99.9 9.9E-24 2.2E-28 188.3 17.5 127 187-351 37-165 (202)
14 cd04121 Rab40 Rab40 subfamily. 99.9 1.4E-23 3.1E-28 185.5 17.4 122 190-351 46-169 (189)
15 KOG0070|consensus 99.9 7.2E-24 1.6E-28 180.5 14.4 134 182-350 46-179 (181)
16 KOG0073|consensus 99.9 1.3E-23 2.8E-28 174.6 14.8 136 182-351 45-180 (185)
17 KOG0080|consensus 99.9 1.5E-23 3.3E-28 173.4 13.2 131 183-351 42-176 (209)
18 KOG0071|consensus 99.9 1.7E-23 3.6E-28 169.5 13.1 129 182-345 46-174 (180)
19 KOG0098|consensus 99.9 3.9E-23 8.4E-28 175.3 14.6 131 183-352 37-171 (216)
20 smart00177 ARF ARF-like small 99.9 7.6E-23 1.6E-27 178.5 16.6 131 183-348 43-173 (175)
21 cd04149 Arf6 Arf6 subfamily. 99.9 5.4E-23 1.2E-27 178.3 15.4 129 183-346 39-167 (168)
22 cd04150 Arf1_5_like Arf1-Arf5- 99.9 9E-23 2E-27 175.2 16.0 129 183-346 30-158 (159)
23 PTZ00133 ADP-ribosylation fact 99.9 1.1E-22 2.4E-27 178.7 16.6 134 183-351 47-180 (182)
24 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 3E-22 6.6E-27 174.3 17.4 117 197-351 50-166 (172)
25 cd01875 RhoG RhoG subfamily. 99.9 2.5E-22 5.3E-27 177.9 17.0 129 197-352 51-180 (191)
26 cd04126 Rab20 Rab20 subfamily. 99.9 3.5E-22 7.6E-27 180.5 18.1 160 183-354 30-195 (220)
27 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 2.8E-22 6.2E-27 182.3 17.5 130 197-354 61-193 (232)
28 KOG0394|consensus 99.9 2.1E-22 4.5E-27 170.5 15.0 133 183-352 40-181 (210)
29 cd04133 Rop_like Rop subfamily 99.9 4.5E-22 9.8E-27 174.0 17.2 124 197-350 49-174 (176)
30 KOG0094|consensus 99.9 1.3E-22 2.9E-27 173.3 13.2 132 182-351 52-187 (221)
31 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 3.4E-22 7.4E-27 175.7 16.3 127 196-350 52-181 (182)
32 KOG0087|consensus 99.9 1.1E-22 2.5E-27 176.0 12.9 149 160-354 29-181 (222)
33 cd04122 Rab14 Rab14 subfamily. 99.9 8.6E-22 1.9E-26 169.9 17.7 115 197-350 51-165 (166)
34 cd04127 Rab27A Rab27a subfamil 99.9 1E-21 2.2E-26 171.4 17.5 117 197-351 63-179 (180)
35 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.2E-21 2.5E-26 174.8 17.9 119 196-351 49-170 (201)
36 cd04158 ARD1 ARD1 subfamily. 99.9 8.8E-22 1.9E-26 170.7 16.5 134 183-350 29-162 (169)
37 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.3E-21 2.7E-26 170.9 16.5 124 197-347 49-173 (175)
38 cd04131 Rnd Rnd subfamily. Th 99.9 1.3E-21 2.9E-26 171.3 16.6 125 197-349 49-176 (178)
39 cd04136 Rap_like Rap-like subf 99.9 1.8E-21 3.9E-26 166.7 16.3 114 197-348 49-162 (163)
40 cd04175 Rap1 Rap1 subgroup. T 99.9 2.6E-21 5.6E-26 166.3 16.8 115 196-348 48-162 (164)
41 KOG0079|consensus 99.9 5.5E-22 1.2E-26 162.0 11.2 135 181-355 37-175 (198)
42 cd04117 Rab15 Rab15 subfamily. 99.9 5.4E-21 1.2E-25 164.4 17.0 119 190-347 40-160 (161)
43 cd01865 Rab3 Rab3 subfamily. 99.9 8.9E-21 1.9E-25 163.5 17.5 115 197-350 50-164 (165)
44 PLN03071 GTP-binding nuclear p 99.9 5.2E-21 1.1E-25 173.1 16.5 114 196-351 61-174 (219)
45 cd04154 Arl2 Arl2 subfamily. 99.9 4.5E-21 9.7E-26 166.7 15.5 129 183-346 44-172 (173)
46 KOG0093|consensus 99.9 1.8E-21 3.8E-26 158.9 11.6 147 164-356 40-190 (193)
47 cd04176 Rap2 Rap2 subgroup. T 99.9 1.1E-20 2.4E-25 162.1 16.8 113 197-347 49-161 (163)
48 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2E-20 4.4E-25 161.1 17.7 115 197-350 51-165 (166)
49 PTZ00369 Ras-like protein; Pro 99.9 2E-20 4.4E-25 165.2 18.0 117 197-351 53-169 (189)
50 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1E-20 2.2E-25 163.3 15.7 127 183-345 30-162 (164)
51 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.8E-20 3.9E-25 164.7 17.2 135 183-352 31-169 (182)
52 cd04103 Centaurin_gamma Centau 99.9 1.3E-20 2.9E-25 161.8 15.9 116 192-347 40-157 (158)
53 cd04109 Rab28 Rab28 subfamily. 99.9 2.1E-20 4.6E-25 168.5 17.6 119 196-352 49-169 (215)
54 cd04144 Ras2 Ras2 subfamily. 99.9 1.7E-20 3.8E-25 165.7 16.6 118 197-352 47-166 (190)
55 cd04111 Rab39 Rab39 subfamily. 99.9 2.8E-20 6E-25 167.4 18.1 117 197-351 52-168 (211)
56 cd01867 Rab8_Rab10_Rab13_like 99.9 3.2E-20 6.8E-25 160.3 17.6 115 197-350 52-166 (167)
57 PF00071 Ras: Ras family; Int 99.9 3.5E-20 7.6E-25 158.7 17.7 114 197-349 48-161 (162)
58 cd04119 RJL RJL (RabJ-Like) su 99.9 2.5E-20 5.5E-25 159.8 16.7 116 196-349 48-167 (168)
59 cd04110 Rab35 Rab35 subfamily. 99.9 3.6E-20 7.9E-25 165.0 18.2 115 197-351 55-169 (199)
60 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.9E-20 4.2E-25 164.5 16.2 121 195-350 50-171 (183)
61 cd04138 H_N_K_Ras_like H-Ras/N 99.9 2.9E-20 6.3E-25 158.5 16.8 113 197-348 49-161 (162)
62 cd04115 Rab33B_Rab33A Rab33B/R 99.9 3.8E-20 8.3E-25 160.4 17.3 114 197-348 51-168 (170)
63 cd01871 Rac1_like Rac1-like su 99.9 2.8E-20 6.1E-25 162.2 16.5 124 197-347 49-173 (174)
64 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 3.7E-20 8E-25 167.5 17.4 129 197-351 49-178 (222)
65 cd04134 Rho3 Rho3 subfamily. 99.8 3.6E-20 7.8E-25 163.6 16.9 129 197-352 48-177 (189)
66 cd00877 Ran Ran (Ras-related n 99.8 3.5E-20 7.7E-25 160.2 16.5 113 196-350 48-160 (166)
67 KOG0091|consensus 99.8 5E-21 1.1E-25 158.9 10.0 133 182-352 38-176 (213)
68 smart00173 RAS Ras subfamily o 99.8 3.7E-20 8E-25 158.9 15.7 115 197-349 48-162 (164)
69 cd04116 Rab9 Rab9 subfamily. 99.8 5.5E-20 1.2E-24 159.0 16.8 113 197-347 54-169 (170)
70 cd04151 Arl1 Arl1 subfamily. 99.8 3.9E-20 8.4E-25 158.2 15.1 128 184-346 30-157 (158)
71 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.3E-20 7.2E-25 159.7 14.7 131 183-346 36-166 (167)
72 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 3.5E-20 7.6E-25 161.4 15.0 129 183-346 45-173 (174)
73 cd00879 Sar1 Sar1 subfamily. 99.8 3.9E-20 8.4E-25 163.0 15.3 134 184-347 50-189 (190)
74 cd04112 Rab26 Rab26 subfamily. 99.8 9.5E-20 2.1E-24 161.1 17.6 118 197-353 50-167 (191)
75 cd04145 M_R_Ras_like M-Ras/R-R 99.8 6.4E-20 1.4E-24 157.1 15.7 114 197-348 50-163 (164)
76 cd04157 Arl6 Arl6 subfamily. 99.8 8E-20 1.7E-24 156.2 15.9 129 183-346 31-161 (162)
77 cd01873 RhoBTB RhoBTB subfamil 99.8 5.7E-20 1.2E-24 163.3 15.4 125 196-346 65-193 (195)
78 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1.5E-19 3.2E-24 157.0 17.6 118 197-350 49-166 (170)
79 KOG0074|consensus 99.8 9.7E-21 2.1E-25 153.6 9.3 88 182-279 46-134 (185)
80 cd04161 Arl2l1_Arl13_like Arl2 99.8 5.7E-20 1.2E-24 159.1 14.9 131 183-345 29-165 (167)
81 cd01866 Rab2 Rab2 subfamily. 99.8 2.3E-19 4.9E-24 155.2 17.8 115 197-350 53-167 (168)
82 cd04124 RabL2 RabL2 subfamily. 99.8 2.3E-19 5E-24 154.1 17.6 113 196-351 48-160 (161)
83 cd04143 Rhes_like Rhes_like su 99.8 1.4E-19 3.1E-24 166.4 17.1 115 197-348 48-170 (247)
84 KOG0095|consensus 99.8 4E-20 8.7E-25 151.3 11.8 143 163-351 25-171 (213)
85 PLN03108 Rab family protein; P 99.8 2.5E-19 5.4E-24 161.0 18.1 116 197-351 55-170 (210)
86 cd04125 RabA_like RabA-like su 99.8 2.8E-19 6.2E-24 157.5 18.1 116 197-351 49-164 (188)
87 cd04177 RSR1 RSR1 subgroup. R 99.8 2.6E-19 5.7E-24 154.7 17.4 116 197-349 49-164 (168)
88 cd01868 Rab11_like Rab11-like. 99.8 2.7E-19 5.9E-24 153.8 17.4 113 197-348 52-164 (165)
89 cd04113 Rab4 Rab4 subfamily. 99.8 2.1E-19 4.7E-24 153.8 16.6 113 197-348 49-161 (161)
90 PLN03110 Rab GTPase; Provision 99.8 2.7E-19 5.9E-24 161.5 17.8 130 183-351 43-176 (216)
91 cd01864 Rab19 Rab19 subfamily. 99.8 2.7E-19 5.8E-24 154.0 16.8 119 191-347 44-164 (165)
92 cd04132 Rho4_like Rho4-like su 99.8 2.7E-19 5.9E-24 157.3 16.9 121 197-353 49-171 (187)
93 cd04140 ARHI_like ARHI subfami 99.8 1.9E-19 4.1E-24 155.1 15.4 113 196-346 48-162 (165)
94 cd01860 Rab5_related Rab5-rela 99.8 4.3E-19 9.3E-24 152.0 17.4 114 196-348 49-162 (163)
95 cd01892 Miro2 Miro2 subfamily. 99.8 1.7E-19 3.8E-24 156.4 15.0 114 197-350 54-167 (169)
96 cd04106 Rab23_lke Rab23-like s 99.8 5.2E-19 1.1E-23 151.3 16.0 111 196-346 50-160 (162)
97 cd04156 ARLTS1 ARLTS1 subfamil 99.8 4.4E-19 9.6E-24 151.5 15.3 116 196-345 43-158 (160)
98 cd04118 Rab24 Rab24 subfamily. 99.8 1.2E-18 2.5E-23 154.1 18.1 127 191-353 42-170 (193)
99 smart00178 SAR Sar1p-like memb 99.8 3.8E-19 8.3E-24 156.4 14.8 129 189-347 53-183 (184)
100 PTZ00099 rab6; Provisional 99.8 4.7E-19 1E-23 154.9 15.1 130 182-350 10-143 (176)
101 smart00175 RAB Rab subfamily o 99.8 1.4E-18 3.1E-23 148.6 17.3 115 197-350 49-163 (164)
102 cd01862 Rab7 Rab7 subfamily. 99.8 1.9E-18 4.1E-23 149.1 17.9 118 197-351 49-169 (172)
103 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.2E-18 2.6E-23 151.4 16.4 122 197-345 48-170 (173)
104 cd04135 Tc10 TC10 subfamily. 99.8 1.4E-18 3.1E-23 150.6 16.8 127 197-349 48-174 (174)
105 PLN03118 Rab family protein; P 99.8 1.7E-18 3.7E-23 155.5 17.7 117 197-351 62-179 (211)
106 cd01861 Rab6 Rab6 subfamily. 99.8 1.5E-18 3.3E-23 148.2 16.4 112 197-347 49-160 (161)
107 cd04142 RRP22 RRP22 subfamily. 99.8 1.5E-18 3.3E-23 154.5 16.9 118 197-351 49-176 (198)
108 KOG0081|consensus 99.8 2.5E-19 5.3E-24 148.2 10.6 144 164-352 28-184 (219)
109 cd04101 RabL4 RabL4 (Rab-like4 99.8 1.7E-18 3.7E-23 148.5 16.0 112 197-348 52-163 (164)
110 smart00174 RHO Rho (Ras homolo 99.8 1.7E-18 3.7E-23 150.1 16.0 127 197-350 46-173 (174)
111 cd04146 RERG_RasL11_like RERG/ 99.8 1.7E-18 3.6E-23 149.1 15.6 115 197-349 47-164 (165)
112 smart00176 RAN Ran (Ras-relate 99.8 1E-18 2.2E-23 155.8 14.1 128 182-351 25-156 (200)
113 cd04123 Rab21 Rab21 subfamily. 99.8 2.2E-18 4.8E-23 146.8 15.5 113 197-348 49-161 (162)
114 cd01863 Rab18 Rab18 subfamily. 99.8 4.4E-18 9.6E-23 145.5 17.1 112 197-347 49-160 (161)
115 KOG0076|consensus 99.8 2.8E-19 6.1E-24 150.2 9.3 136 182-351 54-189 (197)
116 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.5E-18 7.5E-23 145.8 16.1 129 183-346 29-157 (158)
117 cd04139 RalA_RalB RalA/RalB su 99.8 4.3E-18 9.3E-23 145.5 16.2 117 196-350 47-163 (164)
118 KOG0083|consensus 99.8 2.5E-19 5.5E-24 144.0 7.5 132 182-352 28-163 (192)
119 cd04155 Arl3 Arl3 subfamily. 99.8 1.2E-17 2.6E-22 144.7 16.3 129 183-346 44-172 (173)
120 KOG0395|consensus 99.8 1.1E-17 2.4E-22 148.4 15.8 136 169-350 31-166 (196)
121 cd04159 Arl10_like Arl10-like 99.8 1.6E-17 3.4E-22 140.5 16.0 129 183-346 30-158 (159)
122 cd04148 RGK RGK subfamily. Th 99.8 1.3E-17 2.8E-22 151.1 16.2 115 196-350 49-164 (221)
123 cd04147 Ras_dva Ras-dva subfam 99.8 1.5E-17 3.2E-22 148.0 16.3 116 197-349 47-163 (198)
124 cd04114 Rab30 Rab30 subfamily. 99.8 2.3E-17 5E-22 142.2 16.9 114 197-349 56-169 (169)
125 KOG0088|consensus 99.8 1.2E-18 2.6E-23 144.1 8.2 118 196-352 61-178 (218)
126 cd04137 RheB Rheb (Ras Homolog 99.8 2.4E-17 5.2E-22 143.9 16.9 119 197-353 49-167 (180)
127 cd01870 RhoA_like RhoA-like su 99.8 3.4E-17 7.4E-22 142.0 16.8 125 197-347 49-173 (175)
128 KOG0075|consensus 99.8 9.5E-18 2.1E-22 137.2 12.1 130 182-346 50-179 (186)
129 cd00154 Rab Rab family. Rab G 99.8 3E-17 6.5E-22 138.6 15.3 111 196-345 48-158 (159)
130 cd01893 Miro1 Miro1 subfamily. 99.8 3.2E-17 6.9E-22 141.4 15.4 120 196-350 46-165 (166)
131 KOG0097|consensus 99.7 1.2E-17 2.6E-22 135.7 11.7 130 183-351 42-175 (215)
132 cd04129 Rho2 Rho2 subfamily. 99.7 4E-17 8.6E-22 143.9 15.9 126 197-351 49-175 (187)
133 cd00876 Ras Ras family. The R 99.7 5.5E-17 1.2E-21 137.9 14.9 114 197-348 47-160 (160)
134 PTZ00132 GTP-binding nuclear p 99.7 8E-17 1.7E-21 145.1 16.4 114 196-351 57-170 (215)
135 cd00157 Rho Rho (Ras homology) 99.7 6.8E-17 1.5E-21 139.3 15.2 123 197-346 48-170 (171)
136 PLN00023 GTP-binding protein; 99.7 5.5E-17 1.2E-21 152.4 13.9 73 197-279 83-166 (334)
137 cd04102 RabL3 RabL3 (Rab-like3 99.7 5.6E-17 1.2E-21 144.7 13.3 75 197-281 54-146 (202)
138 KOG0072|consensus 99.7 3.6E-17 7.7E-22 133.4 10.2 134 182-350 47-180 (182)
139 COG1100 GTPase SAR1 and relate 99.7 7.4E-16 1.6E-20 138.7 14.2 133 196-351 53-187 (219)
140 cd04171 SelB SelB subfamily. 99.6 3.4E-14 7.3E-19 121.3 16.1 120 190-346 43-163 (164)
141 cd01878 HflX HflX subfamily. 99.6 5.3E-14 1.2E-18 125.5 16.4 106 197-347 89-203 (204)
142 cd01890 LepA LepA subfamily. 99.6 3.6E-14 7.7E-19 123.5 14.5 112 195-348 65-176 (179)
143 cd01897 NOG NOG1 is a nucleola 99.6 4.9E-14 1.1E-18 121.2 14.8 123 184-349 34-168 (168)
144 TIGR00231 small_GTP small GTP- 99.6 1.1E-13 2.3E-18 116.2 15.2 116 191-345 42-160 (161)
145 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 4E-13 8.8E-18 115.3 15.2 115 196-347 49-164 (168)
146 cd01898 Obg Obg subfamily. Th 99.5 4.1E-13 8.8E-18 115.6 14.8 113 197-347 48-169 (170)
147 KOG0393|consensus 99.5 7.7E-14 1.7E-18 122.0 10.3 148 167-351 30-181 (198)
148 cd00881 GTP_translation_factor 99.5 5.8E-13 1.3E-17 116.3 15.8 122 192-348 57-186 (189)
149 cd00882 Ras_like_GTPase Ras-li 99.5 2.2E-13 4.8E-18 112.8 12.5 113 196-345 44-156 (157)
150 cd01891 TypA_BipA TypA (tyrosi 99.5 9.4E-13 2E-17 116.6 16.5 113 190-338 58-171 (194)
151 PRK04213 GTP-binding protein; 99.5 5.6E-13 1.2E-17 118.5 15.0 122 198-348 53-191 (201)
152 cd04105 SR_beta Signal recogni 99.5 9.4E-14 2E-18 124.2 10.0 74 196-279 47-124 (203)
153 PF08477 Miro: Miro-like prote 99.5 9.8E-14 2.1E-18 112.6 8.4 69 197-275 50-119 (119)
154 TIGR02528 EutP ethanolamine ut 99.5 2E-13 4.3E-18 114.4 9.4 99 200-345 38-141 (142)
155 KOG4252|consensus 99.5 3.2E-14 6.8E-19 120.3 4.0 130 182-351 50-183 (246)
156 PRK12299 obgE GTPase CgtA; Rev 99.5 2E-12 4.4E-17 123.8 16.7 118 195-350 204-329 (335)
157 PF00009 GTP_EFTU: Elongation 99.5 1.7E-11 3.8E-16 108.0 20.8 129 184-348 55-186 (188)
158 KOG0077|consensus 99.4 1.4E-13 3E-18 115.2 5.4 79 190-278 57-135 (193)
159 KOG3883|consensus 99.4 6.5E-12 1.4E-16 103.8 14.5 136 169-350 39-176 (198)
160 cd01889 SelB_euk SelB subfamil 99.4 4.6E-12 1E-16 112.0 14.7 116 196-349 67-186 (192)
161 cd01895 EngA2 EngA2 subfamily. 99.4 7.5E-12 1.6E-16 107.3 15.5 118 191-346 44-172 (174)
162 TIGR03594 GTPase_EngA ribosome 99.4 5.6E-12 1.2E-16 125.2 16.7 122 190-350 213-345 (429)
163 TIGR00450 mnmE_trmE_thdF tRNA 99.4 8.8E-12 1.9E-16 123.7 17.6 114 187-351 241-362 (442)
164 TIGR03156 GTP_HflX GTP-binding 99.4 1.2E-11 2.5E-16 119.5 17.7 114 188-347 227-350 (351)
165 cd01888 eIF2_gamma eIF2-gamma 99.4 8.5E-12 1.8E-16 111.5 14.5 116 197-348 83-198 (203)
166 TIGR02729 Obg_CgtA Obg family 99.4 8.5E-12 1.8E-16 119.4 15.2 126 183-348 194-328 (329)
167 COG2229 Predicted GTPase [Gene 99.4 1.1E-11 2.4E-16 106.0 14.1 124 182-347 52-176 (187)
168 PRK03003 GTP-binding protein D 99.4 1.3E-11 2.9E-16 123.9 17.1 121 190-350 252-383 (472)
169 PRK15494 era GTPase Era; Provi 99.4 8.7E-12 1.9E-16 120.0 14.6 113 190-347 93-214 (339)
170 TIGR01393 lepA GTP-binding pro 99.4 1.5E-11 3.2E-16 126.4 16.2 110 197-348 70-179 (595)
171 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 2.4E-11 5.3E-16 110.2 15.1 135 183-349 33-176 (232)
172 cd04164 trmE TrmE (MnmE, ThdF, 99.3 4.4E-11 9.5E-16 100.9 14.9 106 191-348 43-156 (157)
173 cd01883 EF1_alpha Eukaryotic e 99.3 2.8E-11 6.1E-16 109.4 14.2 132 183-338 63-194 (219)
174 PRK05291 trmE tRNA modificatio 99.3 3.3E-11 7.1E-16 120.2 15.8 111 187-350 253-371 (449)
175 cd04168 TetM_like Tet(M)-like 99.3 1.7E-10 3.8E-15 105.5 18.3 81 183-278 50-130 (237)
176 PRK03003 GTP-binding protein D 99.3 3.6E-11 7.9E-16 120.8 14.9 114 190-350 79-200 (472)
177 TIGR00487 IF-2 translation ini 99.3 6E-11 1.3E-15 121.4 16.6 111 198-346 136-247 (587)
178 PRK15467 ethanolamine utilizat 99.3 4.1E-11 8.8E-16 102.8 13.1 104 201-350 41-148 (158)
179 TIGR00483 EF-1_alpha translati 99.3 1.5E-11 3.3E-16 122.1 11.9 129 183-341 71-199 (426)
180 PRK12296 obgE GTPase CgtA; Rev 99.3 9.2E-11 2E-15 117.0 16.1 128 191-350 200-341 (500)
181 KOG1673|consensus 99.3 4.9E-11 1.1E-15 98.9 11.1 136 180-350 48-187 (205)
182 PRK11058 GTPase HflX; Provisio 99.3 2.3E-10 4.9E-15 113.1 17.7 110 198-350 246-363 (426)
183 PRK05433 GTP-binding protein L 99.3 1.5E-10 3.2E-15 119.1 16.7 112 196-349 73-184 (600)
184 TIGR01394 TypA_BipA GTP-bindin 99.2 1.2E-10 2.7E-15 119.4 15.3 130 183-348 50-190 (594)
185 PRK05306 infB translation init 99.2 1.4E-10 2.9E-15 121.8 15.7 118 191-346 331-449 (787)
186 PRK10218 GTP-binding protein; 99.2 2.1E-10 4.6E-15 117.6 16.6 126 187-348 58-194 (607)
187 PRK09518 bifunctional cytidyla 99.2 2.9E-10 6.2E-15 119.7 18.0 121 190-350 491-622 (712)
188 TIGR00475 selB selenocysteine- 99.2 2.3E-10 5.1E-15 117.4 16.8 128 184-348 37-165 (581)
189 CHL00189 infB translation init 99.2 1.8E-10 4E-15 119.8 16.1 115 196-347 294-408 (742)
190 PRK00093 GTP-binding protein D 99.2 4.2E-10 9E-15 112.1 17.6 119 191-349 215-344 (435)
191 cd04166 CysN_ATPS CysN_ATPS su 99.2 2.3E-10 5E-15 102.6 13.6 121 184-339 64-184 (208)
192 PRK00454 engB GTP-binding prot 99.2 6.9E-10 1.5E-14 97.9 16.0 111 197-348 70-193 (196)
193 PRK12297 obgE GTPase CgtA; Rev 99.2 6.9E-10 1.5E-14 109.3 17.4 116 196-350 205-328 (424)
194 TIGR00436 era GTP-binding prot 99.2 3.6E-10 7.8E-15 105.5 14.6 110 195-348 46-163 (270)
195 PRK12317 elongation factor 1-a 99.2 2.9E-10 6.3E-15 112.9 14.6 129 182-341 69-197 (425)
196 cd04163 Era Era subfamily. Er 99.2 5.6E-10 1.2E-14 94.6 13.9 111 195-347 49-167 (168)
197 cd00880 Era_like Era (E. coli 99.2 5.1E-10 1.1E-14 93.7 13.4 112 196-347 44-162 (163)
198 PRK00093 GTP-binding protein D 99.2 3.2E-10 6.9E-15 112.9 13.9 109 190-346 42-159 (435)
199 cd01879 FeoB Ferrous iron tran 99.2 4.9E-10 1.1E-14 94.9 12.6 118 184-347 30-155 (158)
200 TIGR03598 GTPase_YsxC ribosome 99.2 6.4E-10 1.4E-14 97.1 13.4 102 198-338 65-179 (179)
201 cd01896 DRG The developmentall 99.2 1.2E-09 2.5E-14 99.9 15.3 42 191-232 41-89 (233)
202 PF09439 SRPRB: Signal recogni 99.1 1.2E-10 2.6E-15 101.4 7.5 75 197-280 49-128 (181)
203 cd01881 Obg_like The Obg-like 99.1 3.3E-10 7.2E-15 97.7 10.1 124 192-347 38-175 (176)
204 TIGR03680 eif2g_arch translati 99.1 3.6E-10 7.7E-15 111.5 11.6 117 196-348 79-195 (406)
205 KOG4423|consensus 99.1 4.4E-11 9.6E-16 102.1 3.8 120 197-352 75-197 (229)
206 PRK13768 GTPase; Provisional 99.1 1E-10 2.2E-15 108.1 6.3 130 198-348 98-246 (253)
207 KOG0096|consensus 99.1 2.9E-10 6.2E-15 97.5 8.1 127 182-350 40-170 (216)
208 PRK13351 elongation factor G; 99.1 1.9E-09 4.1E-14 113.3 15.8 84 181-279 57-140 (687)
209 TIGR03594 GTPase_EngA ribosome 99.1 1.4E-09 3.1E-14 108.0 13.6 112 190-348 40-159 (429)
210 TIGR00491 aIF-2 translation in 99.1 2.1E-09 4.6E-14 110.0 14.3 132 197-346 69-213 (590)
211 PRK04000 translation initiatio 99.1 1.1E-09 2.4E-14 108.1 11.7 116 197-348 85-200 (411)
212 PRK09518 bifunctional cytidyla 99.1 2E-09 4.4E-14 113.3 14.2 113 191-350 317-437 (712)
213 PF02421 FeoB_N: Ferrous iron 99.0 2.5E-09 5.5E-14 91.1 11.5 115 184-344 34-156 (156)
214 KOG0090|consensus 99.0 1.1E-09 2.4E-14 95.9 9.3 80 191-279 76-160 (238)
215 PRK00089 era GTPase Era; Revie 99.0 4.3E-09 9.2E-14 99.3 13.2 112 195-348 51-170 (292)
216 cd04169 RF3 RF3 subfamily. Pe 99.0 2.8E-09 6.1E-14 99.2 11.3 82 182-278 56-137 (267)
217 cd04165 GTPBP1_like GTPBP1-lik 99.0 2.1E-08 4.5E-13 91.0 16.3 132 192-344 79-218 (224)
218 cd04170 EF-G_bact Elongation f 99.0 8.7E-09 1.9E-13 96.0 14.2 81 183-278 50-130 (268)
219 cd04167 Snu114p Snu114p subfam 99.0 1.3E-08 2.8E-13 91.5 14.5 67 196-277 70-136 (213)
220 cd01876 YihA_EngB The YihA (En 99.0 2.2E-08 4.8E-13 85.0 15.0 111 198-347 46-169 (170)
221 PRK12298 obgE GTPase CgtA; Rev 99.0 2.3E-08 5E-13 97.9 16.7 119 197-349 207-333 (390)
222 PRK00741 prfC peptide chain re 99.0 2.3E-08 4.9E-13 101.5 16.9 81 183-278 65-145 (526)
223 PRK09866 hypothetical protein; 98.9 2.8E-08 6E-13 100.6 16.3 116 197-346 230-350 (741)
224 cd01894 EngA1 EngA1 subfamily. 98.9 1E-08 2.2E-13 86.5 11.4 111 190-347 38-156 (157)
225 PF03029 ATP_bind_1: Conserved 98.9 1.6E-10 3.6E-15 105.6 0.3 132 198-348 92-236 (238)
226 PRK04004 translation initiatio 98.9 1.5E-08 3.2E-13 104.1 14.5 130 199-346 73-215 (586)
227 PRK09554 feoB ferrous iron tra 98.9 2.8E-08 6E-13 104.9 15.8 111 191-347 44-166 (772)
228 PRK05124 cysN sulfate adenylyl 98.9 4.2E-08 9E-13 98.6 15.8 124 183-340 93-216 (474)
229 cd01886 EF-G Elongation factor 98.9 3.2E-08 7E-13 92.3 14.0 82 182-278 49-130 (270)
230 TIGR00437 feoB ferrous iron tr 98.9 1.6E-08 3.6E-13 104.0 12.6 118 184-347 28-153 (591)
231 PRK12736 elongation factor Tu; 98.8 1.1E-07 2.4E-12 93.5 16.7 72 191-277 69-141 (394)
232 TIGR00484 EF-G translation elo 98.8 9.4E-08 2E-12 100.5 15.9 81 183-278 61-141 (689)
233 TIGR00503 prfC peptide chain r 98.8 7.2E-08 1.6E-12 97.9 13.4 79 184-277 67-145 (527)
234 PLN00043 elongation factor 1-a 98.8 2.2E-07 4.9E-12 92.6 15.6 132 182-338 70-202 (447)
235 COG1160 Predicted GTPases [Gen 98.7 1.2E-06 2.5E-11 85.4 19.7 125 187-349 216-351 (444)
236 KOG1707|consensus 98.7 3.3E-08 7.1E-13 98.0 8.8 117 199-350 58-176 (625)
237 TIGR00485 EF-Tu translation el 98.7 3.6E-07 7.7E-12 89.9 16.2 74 190-278 68-142 (394)
238 PTZ00141 elongation factor 1- 98.7 2.8E-07 6.1E-12 91.9 15.5 131 184-339 72-203 (446)
239 TIGR02034 CysN sulfate adenyly 98.7 1.2E-07 2.7E-12 93.5 12.8 82 183-278 66-147 (406)
240 PRK12735 elongation factor Tu; 98.7 4.4E-07 9.5E-12 89.3 16.2 74 190-278 68-142 (396)
241 cd04104 p47_IIGP_like p47 (47- 98.7 4E-07 8.6E-12 80.9 14.2 122 198-349 53-184 (197)
242 cd01885 EF2 EF2 (for archaea a 98.7 2.2E-07 4.8E-12 84.1 12.3 68 196-278 72-139 (222)
243 PLN03126 Elongation factor Tu; 98.7 4.6E-07 9.9E-12 91.0 15.7 76 188-278 135-211 (478)
244 KOG1532|consensus 98.7 1.7E-07 3.6E-12 85.3 10.5 106 221-349 148-264 (366)
245 PRK05506 bifunctional sulfate 98.7 2.7E-07 5.9E-12 96.1 13.6 81 184-278 91-171 (632)
246 TIGR00157 ribosome small subun 98.6 1.4E-07 3E-12 86.8 9.3 96 208-346 24-120 (245)
247 COG0486 ThdF Predicted GTPase 98.6 8.8E-07 1.9E-11 86.5 14.9 119 183-350 251-377 (454)
248 PRK12739 elongation factor G; 98.6 8.3E-07 1.8E-11 93.4 15.4 81 183-278 59-139 (691)
249 cd01850 CDC_Septin CDC/Septin. 98.6 7.3E-07 1.6E-11 83.5 12.4 80 183-278 45-157 (276)
250 CHL00071 tufA elongation facto 98.6 8.8E-07 1.9E-11 87.6 13.3 114 189-337 67-181 (409)
251 PRK10512 selenocysteinyl-tRNA- 98.5 1.3E-06 2.7E-11 90.4 13.7 115 195-348 49-165 (614)
252 PRK00049 elongation factor Tu; 98.5 4.4E-06 9.5E-11 82.3 16.6 113 189-336 67-180 (396)
253 cd01884 EF_Tu EF-Tu subfamily. 98.5 1.9E-06 4.1E-11 76.6 12.5 120 184-338 52-172 (195)
254 KOG3886|consensus 98.5 3.6E-07 7.7E-12 81.2 6.6 71 195-278 51-130 (295)
255 PRK12740 elongation factor G; 98.5 1.4E-06 2.9E-11 91.6 12.1 83 181-278 44-126 (668)
256 TIGR00490 aEF-2 translation el 98.4 1.4E-06 3E-11 92.1 10.6 72 192-278 81-152 (720)
257 KOG0462|consensus 98.4 4.5E-06 9.8E-11 82.5 12.9 128 179-348 104-234 (650)
258 PF01926 MMR_HSR1: 50S ribosom 98.4 5.2E-06 1.1E-10 66.9 11.4 67 190-273 40-116 (116)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 98.4 7.5E-06 1.6E-10 72.5 13.3 80 188-278 40-130 (196)
260 PF10662 PduV-EutP: Ethanolami 98.4 5.8E-06 1.3E-10 69.2 11.8 99 201-345 40-142 (143)
261 COG5256 TEF1 Translation elong 98.3 3E-06 6.5E-11 81.5 10.4 132 180-339 68-201 (428)
262 COG1159 Era GTPase [General fu 98.3 1.2E-05 2.6E-10 74.5 13.8 111 195-347 52-170 (298)
263 PRK00007 elongation factor G; 98.3 1.2E-05 2.6E-10 84.8 15.4 80 184-278 62-141 (693)
264 cd01899 Ygr210 Ygr210 subfamil 98.3 1.8E-05 4E-10 75.4 14.9 36 197-232 69-111 (318)
265 PRK14845 translation initiatio 98.3 7.6E-06 1.7E-10 88.4 13.5 125 199-345 528-669 (1049)
266 TIGR00101 ureG urease accessor 98.2 1E-05 2.2E-10 72.1 10.8 81 221-348 113-195 (199)
267 cd01855 YqeH YqeH. YqeH is an 98.2 6.5E-06 1.4E-10 72.6 8.2 100 210-348 24-124 (190)
268 PRK09435 membrane ATPase/prote 98.2 7.2E-05 1.6E-09 71.6 15.3 112 195-348 147-259 (332)
269 KOG1534|consensus 98.1 2.7E-06 5.8E-11 74.8 4.0 182 125-349 49-251 (273)
270 COG1084 Predicted GTPase [Gene 98.1 5.1E-05 1.1E-09 71.1 12.6 85 183-278 201-294 (346)
271 KOG1191|consensus 98.1 7E-05 1.5E-09 73.5 13.3 132 184-351 303-452 (531)
272 TIGR03597 GTPase_YqeH ribosome 98.0 1.6E-05 3.6E-10 77.2 8.5 102 207-347 50-151 (360)
273 COG2262 HflX GTPases [General 98.0 0.00032 7E-09 67.7 15.6 88 219-350 270-357 (411)
274 cd01859 MJ1464 MJ1464. This f 97.9 3.6E-05 7.9E-10 65.4 7.5 94 210-348 2-95 (156)
275 PF04548 AIG1: AIG1 family; I 97.9 0.00018 3.8E-09 64.7 12.1 82 186-278 38-130 (212)
276 PTZ00416 elongation factor 2; 97.9 7.5E-05 1.6E-09 80.2 10.7 67 196-277 91-157 (836)
277 PLN00116 translation elongatio 97.9 0.0001 2.3E-09 79.2 11.8 67 196-277 97-163 (843)
278 PRK07560 elongation factor EF- 97.9 6.7E-05 1.5E-09 79.6 10.1 68 196-278 86-153 (731)
279 PRK00098 GTPase RsgA; Reviewed 97.9 7.1E-05 1.5E-09 70.9 9.2 87 218-346 78-164 (298)
280 COG0370 FeoB Fe2+ transport sy 97.8 0.00047 1E-08 70.6 13.9 117 184-346 37-161 (653)
281 PRK12289 GTPase RsgA; Reviewed 97.7 0.00015 3.3E-09 70.0 9.5 92 213-347 82-173 (352)
282 PTZ00327 eukaryotic translatio 97.7 0.00029 6.3E-09 70.5 11.3 115 197-348 117-232 (460)
283 PLN03127 Elongation factor Tu; 97.7 0.0006 1.3E-08 68.2 13.2 82 182-278 109-191 (447)
284 COG0481 LepA Membrane GTPase L 97.7 0.0004 8.8E-09 68.0 11.5 130 177-348 51-185 (603)
285 COG0532 InfB Translation initi 97.7 0.00055 1.2E-08 68.1 12.5 113 196-346 54-167 (509)
286 smart00010 small_GTPase Small 97.7 0.0003 6.6E-09 56.6 9.1 51 215-278 41-91 (124)
287 cd01853 Toc34_like Toc34-like 97.6 0.00074 1.6E-08 62.3 12.2 79 190-277 72-162 (249)
288 KOG1145|consensus 97.6 0.00026 5.6E-09 70.4 9.3 118 190-345 195-312 (683)
289 COG1217 TypA Predicted membran 97.6 0.00052 1.1E-08 67.1 11.2 134 179-348 50-194 (603)
290 KOG1489|consensus 97.6 0.0003 6.5E-09 65.7 8.7 113 197-346 244-364 (366)
291 KOG1144|consensus 97.6 0.00025 5.4E-09 72.6 8.5 137 198-349 541-687 (1064)
292 PF06858 NOG1: Nucleolar GTP-b 97.5 0.0002 4.4E-09 49.9 5.1 45 221-275 14-58 (58)
293 KOG1423|consensus 97.5 0.00061 1.3E-08 63.4 9.6 130 195-346 118-268 (379)
294 KOG1490|consensus 97.4 0.0003 6.4E-09 69.3 6.3 126 191-351 209-343 (620)
295 TIGR00991 3a0901s02IAP34 GTP-b 97.4 0.0016 3.6E-08 61.5 10.8 74 194-277 83-166 (313)
296 cd01882 BMS1 Bms1. Bms1 is an 97.4 0.0031 6.8E-08 57.2 12.4 66 195-278 81-147 (225)
297 cd01858 NGP_1 NGP-1. Autoanti 97.4 0.0013 2.9E-08 55.9 9.3 88 218-347 6-93 (157)
298 KOG3905|consensus 97.3 0.0056 1.2E-07 57.5 13.6 70 264-350 222-291 (473)
299 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.0015 3.2E-08 61.6 9.6 86 217-346 75-161 (287)
300 PF05783 DLIC: Dynein light in 97.2 0.0096 2.1E-07 59.8 14.9 72 264-352 196-267 (472)
301 COG3596 Predicted GTPase [Gene 97.2 0.0041 9E-08 57.3 11.1 126 197-348 87-221 (296)
302 COG0536 Obg Predicted GTPase [ 97.2 0.0057 1.2E-07 58.0 12.1 134 182-352 195-336 (369)
303 PRK12288 GTPase RsgA; Reviewed 97.2 0.0025 5.5E-08 61.6 10.0 87 219-346 119-205 (347)
304 KOG0705|consensus 97.1 0.0026 5.6E-08 63.4 9.4 143 162-351 47-191 (749)
305 PRK13796 GTPase YqeH; Provisio 97.1 0.003 6.5E-08 61.6 9.2 87 222-347 71-157 (365)
306 COG2895 CysN GTPases - Sulfate 97.0 0.026 5.6E-07 53.8 14.2 120 183-338 72-192 (431)
307 PF05049 IIGP: Interferon-indu 97.0 0.025 5.4E-07 55.0 14.5 122 198-350 87-215 (376)
308 cd01857 HSR1_MMR1 HSR1/MMR1. 96.9 0.0034 7.3E-08 52.5 7.5 49 217-278 8-56 (141)
309 COG0378 HypB Ni2+-binding GTPa 96.9 0.05 1.1E-06 47.8 14.7 55 266-346 144-198 (202)
310 COG1160 Predicted GTPases [Gen 96.9 0.0037 8E-08 61.4 8.4 112 190-348 44-164 (444)
311 PRK09602 translation-associate 96.9 0.0058 1.2E-07 60.2 9.4 36 197-232 72-114 (396)
312 cd01856 YlqF YlqF. Proteins o 96.8 0.0044 9.4E-08 53.6 7.0 87 215-348 14-100 (171)
313 cd01849 YlqF_related_GTPase Yl 96.7 0.013 2.9E-07 49.6 9.3 82 222-347 1-83 (155)
314 COG0563 Adk Adenylate kinase a 96.6 0.0011 2.5E-08 57.9 2.4 21 36-56 1-21 (178)
315 PRK08118 topology modulation p 96.6 0.0013 2.7E-08 56.9 2.4 20 37-56 3-22 (167)
316 PF13207 AAA_17: AAA domain; P 96.5 0.0018 3.9E-08 52.2 2.6 20 37-56 1-20 (121)
317 PRK07261 topology modulation p 96.4 0.0018 3.9E-08 56.2 2.4 20 37-56 2-21 (171)
318 TIGR00073 hypB hydrogenase acc 96.3 0.021 4.5E-07 51.0 8.3 58 264-347 148-205 (207)
319 TIGR03596 GTPase_YlqF ribosome 96.3 0.016 3.5E-07 54.2 7.9 86 216-348 17-102 (276)
320 PF13555 AAA_29: P-loop contai 96.2 0.0042 9.2E-08 44.3 2.6 23 38-60 26-48 (62)
321 COG4619 ABC-type uncharacteriz 96.2 0.0041 8.9E-08 53.4 2.9 25 36-60 30-54 (223)
322 COG4639 Predicted kinase [Gene 96.1 0.0054 1.2E-07 51.8 3.3 17 38-54 5-21 (168)
323 COG1163 DRG Predicted GTPase [ 96.1 0.19 4.2E-06 47.5 13.6 42 191-232 104-152 (365)
324 PRK06217 hypothetical protein; 96.0 0.0043 9.3E-08 54.3 2.5 21 36-56 2-22 (183)
325 COG4108 PrfC Peptide chain rel 96.0 0.015 3.3E-07 56.7 6.3 75 188-277 72-146 (528)
326 PF13671 AAA_33: AAA domain; P 96.0 0.0045 9.8E-08 51.3 2.3 19 38-56 2-20 (143)
327 PRK09563 rbgA GTPase YlqF; Rev 95.9 0.028 6E-07 52.9 7.6 86 216-348 20-105 (287)
328 COG0480 FusA Translation elong 95.8 0.021 4.6E-07 59.9 6.8 83 181-278 59-142 (697)
329 TIGR02836 spore_IV_A stage IV 95.6 0.37 8E-06 47.5 14.2 26 30-55 12-37 (492)
330 COG1126 GlnQ ABC-type polar am 95.6 0.0072 1.6E-07 53.9 2.2 23 37-59 30-52 (240)
331 KOG1533|consensus 95.6 0.0064 1.4E-07 54.7 1.8 123 125-278 48-177 (290)
332 TIGR00993 3a0901s04IAP86 chlor 95.6 0.16 3.4E-06 52.8 11.8 81 189-278 158-250 (763)
333 PRK03839 putative kinase; Prov 95.4 0.0095 2E-07 51.8 2.4 20 37-56 2-21 (180)
334 PF13238 AAA_18: AAA domain; P 95.4 0.011 2.5E-07 47.6 2.5 19 38-56 1-19 (129)
335 PRK10078 ribose 1,5-bisphospho 95.2 0.011 2.5E-07 51.7 2.3 20 37-56 4-23 (186)
336 PRK14532 adenylate kinase; Pro 95.2 0.012 2.6E-07 51.5 2.4 20 37-56 2-21 (188)
337 PTZ00088 adenylate kinase 1; P 95.2 0.014 3.1E-07 53.1 2.8 23 34-56 5-27 (229)
338 KOG0458|consensus 95.2 0.061 1.3E-06 54.3 7.3 130 182-340 240-373 (603)
339 TIGR02322 phosphon_PhnN phosph 95.1 0.013 2.8E-07 50.8 2.3 21 37-57 3-23 (179)
340 TIGR01359 UMP_CMP_kin_fam UMP- 95.1 0.013 2.9E-07 50.9 2.3 19 38-56 2-20 (183)
341 PF13521 AAA_28: AAA domain; P 95.0 0.013 2.8E-07 50.0 2.0 22 37-58 1-22 (163)
342 TIGR01351 adk adenylate kinase 95.0 0.014 3.1E-07 52.2 2.3 20 37-56 1-20 (210)
343 cd02019 NK Nucleoside/nucleoti 95.0 0.018 3.9E-07 41.9 2.4 21 38-58 2-22 (69)
344 PRK14530 adenylate kinase; Pro 95.0 0.015 3.2E-07 52.2 2.4 20 37-56 5-24 (215)
345 cd01428 ADK Adenylate kinase ( 95.0 0.015 3.3E-07 50.8 2.3 20 37-56 1-20 (194)
346 cd00820 PEPCK_HprK Phosphoenol 94.9 0.017 3.7E-07 46.0 2.2 20 36-55 16-35 (107)
347 PRK13949 shikimate kinase; Pro 94.9 0.017 3.7E-07 50.0 2.4 20 37-56 3-22 (169)
348 PF00005 ABC_tran: ABC transpo 94.9 0.019 4.1E-07 47.3 2.5 21 36-56 12-32 (137)
349 PRK08233 hypothetical protein; 94.9 0.019 4.1E-07 49.6 2.6 21 36-56 4-24 (182)
350 PRK14531 adenylate kinase; Pro 94.8 0.018 4E-07 50.3 2.4 21 36-56 3-23 (183)
351 cd02021 GntK Gluconate kinase 94.8 0.018 3.9E-07 48.3 2.3 19 38-56 2-20 (150)
352 TIGR01360 aden_kin_iso1 adenyl 94.8 0.018 3.9E-07 50.0 2.3 20 37-56 5-24 (188)
353 PRK02496 adk adenylate kinase; 94.8 0.02 4.3E-07 49.9 2.5 21 36-56 2-22 (184)
354 TIGR01313 therm_gnt_kin carboh 94.8 0.017 3.7E-07 49.2 2.0 19 38-56 1-19 (163)
355 TIGR00750 lao LAO/AO transport 94.7 0.37 8E-06 45.6 11.1 111 195-347 125-236 (300)
356 KOG3887|consensus 94.7 0.62 1.3E-05 42.4 11.6 124 197-350 75-203 (347)
357 cd00071 GMPK Guanosine monopho 94.7 0.025 5.4E-07 47.1 2.8 21 38-58 2-22 (137)
358 smart00382 AAA ATPases associa 94.7 0.022 4.7E-07 45.8 2.4 22 36-57 3-24 (148)
359 KOG1143|consensus 94.7 0.096 2.1E-06 50.3 6.9 121 198-339 250-378 (591)
360 PRK00279 adk adenylate kinase; 94.7 0.021 4.5E-07 51.3 2.4 21 36-56 1-21 (215)
361 TIGR03238 dnd_assoc_3 dnd syst 94.6 0.031 6.7E-07 55.8 3.7 37 17-53 10-50 (504)
362 KOG0468|consensus 94.6 0.058 1.2E-06 55.3 5.5 71 196-281 196-266 (971)
363 COG4598 HisP ABC-type histidin 94.6 0.027 5.8E-07 49.0 2.7 24 38-61 35-58 (256)
364 TIGR03263 guanyl_kin guanylate 94.6 0.022 4.8E-07 49.3 2.3 20 37-56 3-22 (180)
365 PF00004 AAA: ATPase family as 94.6 0.024 5.3E-07 45.9 2.4 18 38-55 1-18 (132)
366 COG3276 SelB Selenocysteine-sp 94.5 0.36 7.8E-06 47.5 10.6 127 182-348 35-161 (447)
367 PRK01889 GTPase RsgA; Reviewed 94.5 0.067 1.5E-06 52.0 5.8 84 218-345 110-193 (356)
368 COG3839 MalK ABC-type sugar tr 94.5 0.022 4.8E-07 54.6 2.3 47 38-84 32-101 (338)
369 cd03283 ABC_MutS-like MutS-lik 94.5 0.023 5.1E-07 50.5 2.3 20 37-56 27-46 (199)
370 PRK05480 uridine/cytidine kina 94.4 0.028 6E-07 50.1 2.5 25 33-57 4-28 (209)
371 cd00227 CPT Chloramphenicol (C 94.4 0.028 6E-07 48.7 2.4 19 38-56 5-23 (175)
372 PRK00300 gmk guanylate kinase; 94.3 0.027 5.7E-07 49.9 2.3 21 36-56 6-26 (205)
373 COG1117 PstB ABC-type phosphat 94.3 0.027 5.8E-07 50.3 2.1 22 39-60 37-58 (253)
374 TIGR00235 udk uridine kinase. 94.2 0.029 6.2E-07 50.1 2.3 21 36-56 7-27 (207)
375 cd02023 UMPK Uridine monophosp 94.2 0.037 8E-07 48.8 2.9 22 38-59 2-23 (198)
376 cd03238 ABC_UvrA The excision 94.2 0.032 6.8E-07 48.7 2.4 20 36-55 22-41 (176)
377 COG1136 SalX ABC-type antimicr 94.2 0.03 6.6E-07 50.6 2.3 22 37-58 33-54 (226)
378 PF05729 NACHT: NACHT domain 94.2 0.031 6.8E-07 47.1 2.3 90 214-314 73-164 (166)
379 COG1125 OpuBA ABC-type proline 94.1 0.034 7.3E-07 51.0 2.5 21 38-58 30-50 (309)
380 PRK14528 adenylate kinase; Pro 94.1 0.032 7E-07 48.9 2.4 20 37-56 3-22 (186)
381 PRK13695 putative NTPase; Prov 94.1 0.033 7.1E-07 48.2 2.4 20 36-55 1-20 (174)
382 KOG0464|consensus 94.1 0.029 6.2E-07 54.4 2.0 82 181-277 86-167 (753)
383 COG1122 CbiO ABC-type cobalt t 94.0 0.033 7.1E-07 50.9 2.3 23 37-59 32-54 (235)
384 cd03243 ABC_MutS_homologs The 94.0 0.034 7.4E-07 49.4 2.3 21 36-56 30-50 (202)
385 PRK09270 nucleoside triphospha 94.0 0.091 2E-06 47.6 5.2 34 23-56 21-54 (229)
386 PRK14526 adenylate kinase; Pro 94.0 0.035 7.5E-07 49.9 2.4 21 36-56 1-21 (211)
387 PRK00625 shikimate kinase; Pro 94.0 0.036 7.8E-07 48.2 2.4 20 37-56 2-21 (173)
388 PLN02200 adenylate kinase fami 94.0 0.037 8E-07 50.5 2.5 23 34-56 42-64 (234)
389 PF13173 AAA_14: AAA domain 93.9 0.039 8.4E-07 45.2 2.3 19 38-56 5-23 (128)
390 cd00009 AAA The AAA+ (ATPases 93.9 0.073 1.6E-06 43.2 4.0 22 35-56 19-40 (151)
391 TIGR01425 SRP54_euk signal rec 93.9 0.22 4.8E-06 49.4 7.9 65 196-277 182-252 (429)
392 PRK06762 hypothetical protein; 93.9 0.04 8.7E-07 47.1 2.4 21 37-57 4-24 (166)
393 PRK06547 hypothetical protein; 93.8 0.065 1.4E-06 46.5 3.6 24 33-56 13-36 (172)
394 COG3842 PotA ABC-type spermidi 93.8 0.037 8E-07 53.4 2.3 19 38-56 34-52 (352)
395 COG5257 GCD11 Translation init 93.8 0.28 6E-06 46.4 7.9 113 198-349 87-202 (415)
396 PRK14527 adenylate kinase; Pro 93.8 0.04 8.7E-07 48.4 2.3 21 36-56 7-27 (191)
397 PRK14529 adenylate kinase; Pro 93.7 0.049 1.1E-06 49.3 2.8 22 36-57 1-22 (223)
398 TIGR00554 panK_bact pantothena 93.7 0.083 1.8E-06 49.8 4.4 26 33-58 60-85 (290)
399 COG1116 TauB ABC-type nitrate/ 93.7 0.042 9E-07 50.1 2.3 20 37-56 31-50 (248)
400 cd02025 PanK Pantothenate kina 93.7 0.04 8.6E-07 49.8 2.2 21 38-58 2-22 (220)
401 cd01130 VirB11-like_ATPase Typ 93.7 0.086 1.9E-06 46.2 4.2 35 18-55 11-45 (186)
402 cd03292 ABC_FtsE_transporter F 93.6 0.046 9.9E-07 48.8 2.4 20 37-56 29-48 (214)
403 COG3638 ABC-type phosphate/pho 93.6 0.044 9.5E-07 49.6 2.2 23 37-59 32-54 (258)
404 PLN02674 adenylate kinase 93.6 0.076 1.6E-06 48.8 3.8 25 33-57 29-53 (244)
405 PRK14738 gmk guanylate kinase; 93.6 0.05 1.1E-06 48.6 2.5 23 34-56 12-34 (206)
406 PF00735 Septin: Septin; Inte 93.5 0.05 1.1E-06 51.1 2.6 21 35-55 4-24 (281)
407 cd03226 ABC_cobalt_CbiO_domain 93.5 0.049 1.1E-06 48.4 2.4 20 37-56 28-47 (205)
408 cd03219 ABC_Mj1267_LivG_branch 93.5 0.048 1E-06 49.5 2.4 20 37-56 28-47 (236)
409 PRK14737 gmk guanylate kinase; 93.5 0.047 1E-06 48.0 2.3 20 37-56 6-25 (186)
410 TIGR01526 nadR_NMN_Atrans nico 93.5 0.05 1.1E-06 52.2 2.6 28 36-63 163-190 (325)
411 PRK05057 aroK shikimate kinase 93.5 0.051 1.1E-06 47.1 2.4 21 36-56 5-25 (172)
412 PHA02530 pseT polynucleotide k 93.5 0.045 9.8E-07 51.5 2.3 21 37-57 4-24 (300)
413 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.5 0.05 1.1E-06 48.7 2.4 20 37-56 32-51 (218)
414 PF04665 Pox_A32: Poxvirus A32 93.5 0.056 1.2E-06 49.4 2.7 23 33-55 11-33 (241)
415 cd03222 ABC_RNaseL_inhibitor T 93.5 0.048 1E-06 47.6 2.2 20 37-56 27-46 (177)
416 PF07728 AAA_5: AAA domain (dy 93.5 0.053 1.1E-06 44.8 2.4 19 38-56 2-20 (139)
417 cd03264 ABC_drug_resistance_li 93.5 0.048 1E-06 48.6 2.3 20 37-56 27-46 (211)
418 PRK00131 aroK shikimate kinase 93.5 0.052 1.1E-06 46.3 2.4 22 35-56 4-25 (175)
419 COG1120 FepC ABC-type cobalami 93.4 0.048 1E-06 50.3 2.3 19 38-56 31-49 (258)
420 COG1618 Predicted nucleotide k 93.4 0.063 1.4E-06 45.8 2.7 23 34-56 4-26 (179)
421 PF13479 AAA_24: AAA domain 93.4 0.051 1.1E-06 48.8 2.3 22 34-55 2-23 (213)
422 TIGR00960 3a0501s02 Type II (G 93.4 0.052 1.1E-06 48.5 2.4 20 37-56 31-50 (216)
423 cd03274 ABC_SMC4_euk Eukaryoti 93.4 0.058 1.3E-06 48.4 2.6 23 38-60 28-50 (212)
424 TIGR02673 FtsE cell division A 93.3 0.054 1.2E-06 48.3 2.4 20 37-56 30-49 (214)
425 cd03280 ABC_MutS2 MutS2 homolo 93.3 0.055 1.2E-06 48.0 2.4 20 37-56 30-49 (200)
426 PRK15177 Vi polysaccharide exp 93.3 0.052 1.1E-06 48.7 2.3 20 37-56 15-34 (213)
427 PRK09825 idnK D-gluconate kina 93.3 0.054 1.2E-06 47.2 2.3 20 37-56 5-24 (176)
428 cd03214 ABC_Iron-Siderophores_ 93.3 0.056 1.2E-06 47.0 2.4 21 36-56 26-46 (180)
429 cd03247 ABCC_cytochrome_bd The 93.3 0.057 1.2E-06 46.8 2.4 20 37-56 30-49 (178)
430 cd03262 ABC_HisP_GlnQ_permease 93.3 0.055 1.2E-06 48.2 2.4 20 37-56 28-47 (213)
431 TIGR03574 selen_PSTK L-seryl-t 93.3 0.054 1.2E-06 49.7 2.4 19 38-56 2-20 (249)
432 cd00464 SK Shikimate kinase (S 93.3 0.055 1.2E-06 45.3 2.3 20 37-56 1-20 (154)
433 PRK08356 hypothetical protein; 93.3 0.057 1.2E-06 47.7 2.4 21 36-56 6-26 (195)
434 cd02027 APSK Adenosine 5'-phos 93.3 0.056 1.2E-06 45.6 2.3 19 38-56 2-20 (149)
435 cd03269 ABC_putative_ATPase Th 93.3 0.057 1.2E-06 48.1 2.4 20 37-56 28-47 (210)
436 cd03265 ABC_DrrA DrrA is the A 93.3 0.057 1.2E-06 48.5 2.4 20 37-56 28-47 (220)
437 cd03259 ABC_Carb_Solutes_like 93.2 0.057 1.2E-06 48.2 2.4 20 37-56 28-47 (213)
438 cd01120 RecA-like_NTPases RecA 93.2 0.055 1.2E-06 45.2 2.2 18 38-55 2-19 (165)
439 TIGR01166 cbiO cobalt transpor 93.2 0.056 1.2E-06 47.3 2.3 20 37-56 20-39 (190)
440 PLN02459 probable adenylate ki 93.2 0.06 1.3E-06 49.8 2.5 23 34-56 28-50 (261)
441 PRK04182 cytidylate kinase; Pr 93.2 0.06 1.3E-06 46.3 2.4 20 37-56 2-21 (180)
442 COG2884 FtsE Predicted ATPase 93.2 0.059 1.3E-06 47.3 2.2 19 38-56 31-49 (223)
443 COG4161 ArtP ABC-type arginine 93.2 0.069 1.5E-06 45.7 2.6 24 37-60 30-53 (242)
444 PRK13543 cytochrome c biogenes 93.2 0.059 1.3E-06 48.2 2.4 21 37-57 39-59 (214)
445 TIGR02211 LolD_lipo_ex lipopro 93.2 0.06 1.3E-06 48.3 2.4 20 37-56 33-52 (221)
446 cd03301 ABC_MalK_N The N-termi 93.2 0.057 1.2E-06 48.1 2.3 20 37-56 28-47 (213)
447 cd03234 ABCG_White The White s 93.1 0.06 1.3E-06 48.6 2.4 20 37-56 35-54 (226)
448 COG1118 CysA ABC-type sulfate/ 93.1 0.056 1.2E-06 50.8 2.2 20 37-56 30-49 (345)
449 cd03266 ABC_NatA_sodium_export 93.1 0.061 1.3E-06 48.1 2.4 21 36-56 32-52 (218)
450 cd02028 UMPK_like Uridine mono 93.1 0.063 1.4E-06 46.8 2.4 20 38-57 2-21 (179)
451 TIGR03410 urea_trans_UrtE urea 93.1 0.061 1.3E-06 48.6 2.4 21 36-56 27-47 (230)
452 TIGR02315 ABC_phnC phosphonate 93.1 0.061 1.3E-06 49.0 2.4 20 37-56 30-49 (243)
453 cd03232 ABC_PDR_domain2 The pl 93.1 0.064 1.4E-06 47.2 2.4 20 37-56 35-54 (192)
454 PRK13540 cytochrome c biogenes 93.1 0.064 1.4E-06 47.5 2.4 21 36-56 28-48 (200)
455 TIGR03608 L_ocin_972_ABC putat 93.1 0.063 1.4E-06 47.5 2.4 20 37-56 26-45 (206)
456 KOG3347|consensus 93.1 0.064 1.4E-06 45.1 2.2 24 33-56 5-28 (176)
457 cd03216 ABC_Carb_Monos_I This 93.1 0.066 1.4E-06 45.8 2.4 19 37-55 28-46 (163)
458 cd03223 ABCD_peroxisomal_ALDP 93.1 0.066 1.4E-06 46.0 2.4 20 37-56 29-48 (166)
459 cd03235 ABC_Metallic_Cations A 93.0 0.064 1.4E-06 47.9 2.4 19 37-55 27-45 (213)
460 cd01131 PilT Pilus retraction 93.0 0.062 1.3E-06 47.6 2.3 18 38-55 4-21 (198)
461 cd03263 ABC_subfamily_A The AB 93.0 0.061 1.3E-06 48.2 2.3 20 37-56 30-49 (220)
462 cd03218 ABC_YhbG The ABC trans 93.0 0.064 1.4E-06 48.5 2.4 20 37-56 28-47 (232)
463 cd03258 ABC_MetN_methionine_tr 93.0 0.061 1.3E-06 48.7 2.3 20 37-56 33-52 (233)
464 cd03261 ABC_Org_Solvent_Resist 93.0 0.065 1.4E-06 48.6 2.4 20 37-56 28-47 (235)
465 cd03224 ABC_TM1139_LivF_branch 93.0 0.065 1.4E-06 48.0 2.4 20 37-56 28-47 (222)
466 TIGR01978 sufC FeS assembly AT 93.0 0.065 1.4E-06 48.8 2.4 20 37-56 28-47 (243)
467 PF03266 NTPase_1: NTPase; In 93.0 0.069 1.5E-06 46.2 2.4 19 37-55 1-19 (168)
468 cd03225 ABC_cobalt_CbiO_domain 93.0 0.064 1.4E-06 47.8 2.3 20 37-56 29-48 (211)
469 cd03230 ABC_DR_subfamily_A Thi 93.0 0.069 1.5E-06 46.1 2.4 19 37-55 28-46 (173)
470 cd03229 ABC_Class3 This class 93.0 0.065 1.4E-06 46.5 2.3 20 37-56 28-47 (178)
471 PRK13947 shikimate kinase; Pro 92.9 0.068 1.5E-06 45.8 2.4 20 37-56 3-22 (171)
472 COG4615 PvdE ABC-type sideroph 92.9 0.071 1.5E-06 51.8 2.6 38 38-75 352-399 (546)
473 COG0218 Predicted GTPase [Gene 92.9 2 4.4E-05 38.0 11.5 127 183-348 55-196 (200)
474 cd03293 ABC_NrtD_SsuB_transpor 92.9 0.066 1.4E-06 48.1 2.3 20 37-56 32-51 (220)
475 COG1121 ZnuC ABC-type Mn/Zn tr 92.9 0.066 1.4E-06 49.3 2.3 19 37-55 32-50 (254)
476 PRK11701 phnK phosphonate C-P 92.9 0.068 1.5E-06 49.3 2.4 21 36-56 33-53 (258)
477 TIGR00150 HI0065_YjeE ATPase, 92.9 0.17 3.6E-06 42.0 4.4 21 36-56 23-43 (133)
478 PRK11629 lolD lipoprotein tran 92.9 0.069 1.5E-06 48.4 2.4 20 37-56 37-56 (233)
479 PF13191 AAA_16: AAA ATPase do 92.9 0.069 1.5E-06 46.0 2.3 22 35-56 24-45 (185)
480 TIGR02770 nickel_nikD nickel i 92.8 0.067 1.4E-06 48.4 2.3 20 37-56 14-33 (230)
481 cd03256 ABC_PhnC_transporter A 92.8 0.067 1.5E-06 48.6 2.3 20 37-56 29-48 (241)
482 cd03257 ABC_NikE_OppD_transpor 92.8 0.072 1.6E-06 48.0 2.4 21 36-56 32-52 (228)
483 PF00485 PRK: Phosphoribulokin 92.8 0.076 1.6E-06 46.8 2.5 22 38-59 2-23 (194)
484 PLN03046 D-glycerate 3-kinase; 92.8 0.15 3.2E-06 50.4 4.6 26 34-59 211-236 (460)
485 cd03272 ABC_SMC3_euk Eukaryoti 92.8 0.069 1.5E-06 48.6 2.3 24 37-60 25-48 (243)
486 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.8 0.075 1.6E-06 44.6 2.3 20 37-56 28-47 (144)
487 cd03215 ABC_Carb_Monos_II This 92.8 0.075 1.6E-06 46.3 2.4 20 37-56 28-47 (182)
488 COG0703 AroK Shikimate kinase 92.7 0.075 1.6E-06 45.9 2.3 20 36-55 3-22 (172)
489 TIGR01189 ccmA heme ABC export 92.7 0.076 1.6E-06 46.8 2.4 21 36-56 27-47 (198)
490 cd03297 ABC_ModC_molybdenum_tr 92.7 0.072 1.6E-06 47.6 2.3 21 36-56 24-44 (214)
491 PRK05800 cobU adenosylcobinami 92.7 0.076 1.7E-06 46.0 2.3 20 37-56 3-22 (170)
492 cd03254 ABCC_Glucan_exporter_l 92.7 0.076 1.6E-06 47.9 2.4 20 37-56 31-50 (229)
493 cd03281 ABC_MSH5_euk MutS5 hom 92.7 0.086 1.9E-06 47.4 2.7 22 36-57 30-51 (213)
494 PRK14242 phosphate transporter 92.7 0.075 1.6E-06 48.8 2.4 20 37-56 34-53 (253)
495 COG4559 ABC-type hemin transpo 92.7 0.074 1.6E-06 47.5 2.2 18 38-55 30-47 (259)
496 smart00072 GuKc Guanylate kina 92.7 0.089 1.9E-06 46.0 2.7 20 37-56 4-23 (184)
497 PRK01184 hypothetical protein; 92.7 0.083 1.8E-06 45.9 2.5 18 37-54 3-20 (184)
498 cd03246 ABCC_Protease_Secretio 92.7 0.076 1.7E-06 45.8 2.3 20 37-56 30-49 (173)
499 PF03193 DUF258: Protein of un 92.6 0.13 2.9E-06 44.0 3.7 21 36-56 36-56 (161)
500 smart00534 MUTSac ATPase domai 92.6 0.085 1.8E-06 46.2 2.6 20 38-57 2-21 (185)
No 1
>KOG0082|consensus
Probab=100.00 E-value=1.1e-100 Score=718.60 Aligned_cols=354 Identities=47% Similarity=0.747 Sum_probs=342.5
Q ss_pred CCCcCCCCHHHHHHHHhcHHHHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhhHhhcCCCCChhHhhhhhhhhhhHHH
Q psy14891 1 MGACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLL 80 (359)
Q Consensus 1 mg~~~s~~~~~~~~~~~s~~Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr~l~~~g~~~~E~~~~~~~I~~Nii 80 (359)
|||+.| ++++++.++|++||++|+.++++.++.+|+||||+||||||||+||||+||..||+++|+..||++||.|++
T Consensus 1 MG~~~s--~e~~~~~~~~~~I~~~l~~~~~~~~~~iKlLLLGageSGKSTI~KQmkilh~~gfs~ee~~~~r~~I~~N~~ 78 (354)
T KOG0082|consen 1 MGCICS--AEEKEQVKRSKEIDKQLKKEKKKEKKIIKLLLLGAGESGKSTIVKQMKILHGDGFSEEELLEYRPVIYSNII 78 (354)
T ss_pred CCcccC--chhhhcchhhhhhhHHHHHHHHhhhhheeeeeecCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999 788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCccccHHHHHHHHccccccCcccCCcHHHHHHHHHhcCChHHHHHHHhccccccCcchhHHhh
Q psy14891 81 SSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFE 160 (359)
Q Consensus 81 ~~~~~li~~~~~l~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~ 160 (359)
+++..|++|+..+++++++|..+.++..++.........++++++++++|+.||+||+||+||.|+++|+|+||+.|||+
T Consensus 79 ~~~~~ll~a~~~~~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~e~~~~i~~lW~d~~Iq~~~~r~~e~~l~Dsa~Yfl~ 158 (354)
T KOG0082|consen 79 QSLKALLRAMETLGINLDDPERENDAQKLTLLADAAEELGVFSPELAEAIKELWKDPGIQACYERRREFQLNDSAKYFLE 158 (354)
T ss_pred HHHHHHHHHHHHhcCCCCChhhhhHHHHHHHhhhcccccccCCHHHHHHHHHHHcCHHHHHHHHcCCcCCCCccHHHHHH
Confidence 99999999999999999999888888888755554444468999999999999999999999999999999999999999
Q ss_pred cchhhccCCCccCccccccccccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccC
Q psy14891 161 NMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLED 240 (359)
Q Consensus 161 ~~~ri~~~~y~Pt~~Dil~~r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed 240 (359)
+++||+.|+|.||++|||++|+||+|+.+..|.+++.+++++|+|||+++|++|.|||++|++||||+++|+|||++.||
T Consensus 159 ~l~rI~~~~Y~PT~~DIL~~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED 238 (354)
T KOG0082|consen 159 NLDRISSPDYVPTEQDILRSRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEED 238 (354)
T ss_pred hHHHhcCCCCCCCHHHHHhhccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCC
Q psy14891 241 SSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNS 320 (359)
Q Consensus 241 ~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~ 320 (359)
+.+|||.+|+++|+++|+++||.+++||||+||.|||+||+ +..|++.|||+|.|+ +++++|.+||+.+|.+++++.
T Consensus 239 ~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi--~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~ 315 (354)
T KOG0082|consen 239 ETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKI--KKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNK 315 (354)
T ss_pred cchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHh--ccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999 999999999999999 999999999999999999877
Q ss_pred CCceEEEEeeccCCchHHHHHHHHHHHHHHhhhhhccCC
Q psy14891 321 AKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359 (359)
Q Consensus 321 ~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l~~~~l~ 359 (359)
.+.+|+|+|||+||+||+.||++|.++|++.||+.+||+
T Consensus 316 ~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~~gl~ 354 (354)
T KOG0082|consen 316 DKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKDAGLI 354 (354)
T ss_pred CCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999999999999999999985
No 2
>KOG0085|consensus
Probab=100.00 E-value=2e-99 Score=658.71 Aligned_cols=353 Identities=41% Similarity=0.686 Sum_probs=342.2
Q ss_pred CCCcCCCCHHHHHHHHhcHHHHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhhHhhcCCCCChhHhhhhhhhhhhHHH
Q psy14891 1 MGACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLL 80 (359)
Q Consensus 1 mg~~~s~~~~~~~~~~~s~~Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr~l~~~g~~~~E~~~~~~~I~~Nii 80 (359)
|.||+| .++|++++.+.+|+++|.++++..++++|+||||+||||||||+|||||||+.||++++++.|+++||.|++
T Consensus 7 ~~ccls--ee~ke~~ri~~eierql~rdkk~arrelkllllgtgesgkstfikqmriihg~gyseedrkgf~~lvyqnif 84 (359)
T KOG0085|consen 7 MCCCLS--EEEKEAARINQEIERQLRRDKKDARRELKLLLLGTGESGKSTFIKQMRIIHGAGYSEEDRKGFTKLVYQNIF 84 (359)
T ss_pred hHhhCc--HhHHHHHHHHHHHHHHHHHHhHhhhhhheeeeecCCCcchhhHHHHHHhhhcCCCChhhhccchHHHHHHHH
Confidence 679999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCccccHHHHHHHHccccccCcccCCcHHHHHHHHHhcCChHHHHHHHhccccccCcchhHHhh
Q psy14891 81 SSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFE 160 (359)
Q Consensus 81 ~~~~~li~~~~~l~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~ 160 (359)
.+|++.|+||+.|.|++..+++++++..+.+...+.. +.|...++.+|+.||.|||||+||+||++|||.|||.|+|.
T Consensus 85 ~amqaMIrAMetL~I~y~~e~nk~~A~~vrevd~ekV--ttfe~~yv~aik~LW~D~GIqeCYdRRREyqLsDSakYyls 162 (359)
T KOG0085|consen 85 TAMQAMIRAMETLKIPYKREENKAHASLVREVDVEKV--TTFEKRYVSAIKWLWRDPGIQECYDRRREYQLSDSAKYYLS 162 (359)
T ss_pred HHHHHHHHHHHHhccccccccchhhhhHhhhcchHHh--hhhhHHHHHHHHHHHhCcchHHHHHHHHHhhcchhhhHHhh
Confidence 9999999999999999999999999998876544332 46788999999999999999999999999999999999999
Q ss_pred cchhhccCCCccCccccccccccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccC
Q psy14891 161 NMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLED 240 (359)
Q Consensus 161 ~~~ri~~~~y~Pt~~Dil~~r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed 240 (359)
+++||+.|+|.||.+|+|+.|+||+|+.++.|.+.++.|++.|+|||+++|++|+|||+++.+++|++++|+|||+|.|.
T Consensus 163 dldria~~~ylPTqQDvLRvRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~ 242 (359)
T KOG0085|consen 163 DLDRIATPGYLPTQQDVLRVRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVES 242 (359)
T ss_pred hhhhhcCcccCcchhhhheeecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCC
Q psy14891 241 SSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNS 320 (359)
Q Consensus 241 ~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~ 320 (359)
++.|||+||+.+|..++..|||.+.++|||+||.|++++|+ ..++|.+|||+|.||..++++|..||.+.|.++++..
T Consensus 243 dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEekI--~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~ 320 (359)
T KOG0085|consen 243 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKI--LYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDS 320 (359)
T ss_pred cchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhhh--hHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCc
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999999999888
Q ss_pred CCceEEEEeeccCCchHHHHHHHHHHHHHHhhhhhccCC
Q psy14891 321 AKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359 (359)
Q Consensus 321 ~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l~~~~l~ 359 (359)
.+.+|.|+|||+|++||+.||.+|+|+|++.||++.+|+
T Consensus 321 dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~LkE~NLv 359 (359)
T KOG0085|consen 321 DKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 359 (359)
T ss_pred cceeeeeeeecccchhHHHHHHHHHHHHHHhhhHhhccC
Confidence 899999999999999999999999999999999998874
No 3
>KOG0099|consensus
Probab=100.00 E-value=1e-88 Score=600.37 Aligned_cols=357 Identities=41% Similarity=0.667 Sum_probs=336.3
Q ss_pred CCCcCCCC-----HHHHHHHHhcHHHHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhhHhhcCCCCChhHhhhhhhhh
Q psy14891 1 MGACISLD-----SEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTV 75 (359)
Q Consensus 1 mg~~~s~~-----~~~~~~~~~s~~Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr~l~~~g~~~~E~~~~~~~I 75 (359)
||||+|+. .+++++.++|+.|+++|+.++...+.+.|+||||+||||||||+|||||+|-+||+++|+++-.+-|
T Consensus 1 m~~~~~k~~~~~~~~~~~q~~~s~~i~~ql~~~k~~~~aThrlLLLGagESGKsTIvKQMRILHvnGF~~~EkreKI~dI 80 (379)
T KOG0099|consen 1 MGCLGSKKTEDQRAEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNDEEKREKIQDI 80 (379)
T ss_pred CCcccCCChhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHhheeccccccchhhhhhhheeeecCCChHHHHHhhHHH
Confidence 89999873 4577899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhcc--cccCccccHHHHHHHHccccccCcccCCcHHHHHHHHHhcCChHHHHHHHhccccccCc
Q psy14891 76 MDNLLSSMKYVLGGMGILR--INLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELND 153 (359)
Q Consensus 76 ~~Nii~~~~~li~~~~~l~--i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d 153 (359)
+.|+-++|..|+.+|..++ +++++|+++..++.|++.....+ ..++||+.+.++.||+|.||+.||+|++||||.|
T Consensus 81 ~~Ni~eai~~iv~aM~~l~p~v~l~~~~~~~~~dYIls~~~~~~--~~~~~Ef~dHv~~lW~D~Gv~acyeRSnEyqLiD 158 (379)
T KOG0099|consen 81 KNNIKEAILTIVGAMSNLVPPVELANPENQFRVDYILSVMNSPD--FDYPPEFYDHVKTLWEDEGVRACYERSNEYQLID 158 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccCCcccchhHHHHHhcCCCCc--ccCCHHHHHHHHHHhhhhhHHHHHhccCccchhh
Confidence 9999999999999999998 88999999999999998876544 4789999999999999999999999999999999
Q ss_pred chhHHhhcchhhccCCCccCccccccccccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCC
Q psy14891 154 SALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGY 233 (359)
Q Consensus 154 ~~~yfl~~~~ri~~~~y~Pt~~Dil~~r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~y 233 (359)
||+|||+++++|.+++|.|+.+|||+||+-|.|+.++.|.+..++|+++|+|||+.+|++|+.||.++++||||++.|+|
T Consensus 159 cAqYFLd~~~~i~~~~Y~Ps~qDiLrcRvlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsy 238 (379)
T KOG0099|consen 159 CAQYFLDKIDVIKQADYVPSDQDILRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSY 238 (379)
T ss_pred HHHHHHHhhheecccCCCCcHHHHHHhhhhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccC------------CCCC
Q psy14891 234 DMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKG------------PDFD 301 (359)
Q Consensus 234 d~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g------------~~~~ 301 (359)
|+++.||++.||+.|++.+|+++.+++|+..+++|||+||.|++.+|+...++.+.+|||+|.+ .+..
T Consensus 239 n~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~ 318 (379)
T KOG0099|consen 239 NMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPR 318 (379)
T ss_pred hhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChh
Confidence 9999999999999999999999999999999999999999999999996667789999999974 1234
Q ss_pred HHHHHHHHHHHHhhhccCC---CCceEEEEeeccCCchHHHHHHHHHHHHHHhhhhhccCC
Q psy14891 302 VDSGALFIQHKFALRNHNS---AKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359 (359)
Q Consensus 302 ~~~a~~fi~~~f~~~~~~~---~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l~~~~l~ 359 (359)
+..|.-||+..|+...++. .+.+|+|||||+||+||+.||+++.+.|++.+|++.+|+
T Consensus 319 v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVFnDcrdiIqr~hlrqyeLl 379 (379)
T KOG0099|consen 319 VTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 379 (379)
T ss_pred hHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5567788999999887543 578999999999999999999999999999999999986
No 4
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=100.00 E-value=5.4e-86 Score=632.18 Aligned_cols=339 Identities=47% Similarity=0.767 Sum_probs=321.0
Q ss_pred HhcHHHHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhhHhhcCCCCChhHhhhhhhhhhhHHHHHHHHHHHHHhhccc
Q psy14891 16 RRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRI 95 (359)
Q Consensus 16 ~~s~~Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr~l~~~g~~~~E~~~~~~~I~~Nii~~~~~li~~~~~l~i 95 (359)
++|++||++|++++++.++++||||||+||||||||+||||++|++||+++|+..|+++||.|++++|+.|+++++.+++
T Consensus 2 ~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmril~~~gfs~~E~~~~~~~I~~Nii~~~~~ll~a~~~~~i 81 (342)
T smart00275 2 RRNKEIEKQLEEERKKKKREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNILESMKALVDAMEELNI 81 (342)
T ss_pred cchHHHHHHHHHhHHHhhcchheeeeecCCCcchhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccHHHHHHHHcccccc-CcccCCcHHHHHHHHHhcCChHHHHHHHhccccccCcchhHHhhcchhhccCCCccCc
Q psy14891 96 NLQSAKNKNYAKTILSTMCCF-DEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNA 174 (359)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~Pt~ 174 (359)
+++++++...+..+++..... .....+++++++.|..||+||+||.||.++++|+|+|++.|||++++||+.|+|+||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~~~y~Pt~ 161 (342)
T smart00275 82 PFEDPESILDIRIITEQFNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGDPDYVPTE 161 (342)
T ss_pred CCCChhhHHHHHHHhccccccccccccCCHHHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhCCCCCCCH
Confidence 999888866666666542111 1124588999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHH
Q psy14891 175 TDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFE 254 (359)
Q Consensus 175 ~Dil~~r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~ 254 (359)
+|++++|.||+|+.+..|.++++++++||+|||+++|++|.+||+++++||||+|+|+|||+++||+..||+.+|+.+|+
T Consensus 162 ~Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~ 241 (342)
T smart00275 162 QDILRSRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFE 241 (342)
T ss_pred HHhhheeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccC-CCCceEEEEeeccC
Q psy14891 255 QVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHN-SAKVIYPHFTTATD 333 (359)
Q Consensus 255 ~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~-~~~~i~~~~tsA~d 333 (359)
++++++++.++|++||+||.|++.+|+ +..|+++|||+|+|+ +++++|.+||+++|.++++. .++.+|+|+|||+|
T Consensus 242 ~l~~~~~~~~~piil~~NK~D~~~~Kl--~~~~l~~~fp~y~g~-~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~D 318 (342)
T smart00275 242 SICNSRWFANTSIILFLNKIDLFEEKI--KKVPLVDYFPDYKGP-NDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATD 318 (342)
T ss_pred HHHcCccccCCcEEEEEecHHhHHHHh--CCCchhccCCCCCCC-CCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecc
Confidence 999999999999999999999999999 888999999999998 89999999999999999876 56899999999999
Q ss_pred CchHHHHHHHHHHHHHHhhhhhcc
Q psy14891 334 TSNVQTVFHAVMDLVIKINLQQVT 357 (359)
Q Consensus 334 ~~ni~~vf~~v~~~Il~~~l~~~~ 357 (359)
+.+|+.+|++|.+.|++.+|++.|
T Consensus 319 t~~~~~v~~~v~~~I~~~~l~~~~ 342 (342)
T smart00275 319 TRNIRVVFDAVKDIILQRNLKDAG 342 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999876
No 5
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=100.00 E-value=4.3e-82 Score=600.93 Aligned_cols=317 Identities=50% Similarity=0.839 Sum_probs=302.3
Q ss_pred eeEEEeccCCCchhHHHhhhHhhcCCCCChhHhhhhhhhhhhHHHHHHHHHHHHHhhcccccCccccHHHHHHHHccccc
Q psy14891 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCC 115 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~l~~~g~~~~E~~~~~~~I~~Nii~~~~~li~~~~~l~i~~~~~~~~~~~~~i~~~~~~ 115 (359)
+||||||+||||||||+||||++|++||+++|+..|+.+||.|++.+|+.|+++++.+++++.+|++...+..+......
T Consensus 1 ~klLlLG~geSGKSTi~KQmril~~~gfs~~Er~~~~~~I~~Ni~~~~~~ll~a~~~~~i~~~~~~~~~~~~~i~~~~~~ 80 (317)
T cd00066 1 VKLLLLGAGESGKSTILKQMKILHGDGFSEEELREYRPVIYSNILQSMKALLEAMERLNIPFGDPENEKDAKKILSFAPE 80 (317)
T ss_pred CeEEEecCCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChhhHHHHHHHHhcccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999888778777765443
Q ss_pred cCcccCCcHHHHHHHHHhcCChHHHHHHHhccccccCcchhHHhhcchhhccCCCccCccccccccccccceeEEEEeeC
Q psy14891 116 FDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLG 195 (359)
Q Consensus 116 ~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~Pt~~Dil~~r~~T~G~~~~~~~~~ 195 (359)
. ....+++++++.|..||+||+||+||.++++++++|++.|||++++||+.++|.||.+|++++|.||+|+.+..|.++
T Consensus 81 ~-~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~ 159 (317)
T cd00066 81 L-EEGELPPELAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISDPDYIPTEQDILRARVKTTGIVETKFTIK 159 (317)
T ss_pred c-cccCCCHHHHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhCCCCCCChhHheeeecccCCeeEEEEEec
Confidence 2 225689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
++++.+||+|||+++|++|.+||+++++||||+|+|+|||++.||+..||+.+|+.+|+++++++++.++|++||+||+|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhhhhh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQ 355 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l~~ 355 (359)
++++|+ +..||+.|||+|.|.++++++|.+||.++|.++++..+|.+|+|+|||+|+++|+.||++|.+.|++.+|++
T Consensus 240 ~f~~ki--~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l~~ 317 (317)
T cd00066 240 LFEEKI--KKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNLKD 317 (317)
T ss_pred HHHHhh--cCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHHhcC
Confidence 999999 888999999999994489999999999999999877678999999999999999999999999999999874
No 6
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=100.00 E-value=7.8e-80 Score=602.44 Aligned_cols=337 Identities=45% Similarity=0.776 Sum_probs=302.8
Q ss_pred HHHHHHHhcHHHHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhhHhhcCCCCChhHhhhhhhhhhhHHHHHHHHHHHH
Q psy14891 10 EEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGG 89 (359)
Q Consensus 10 ~~~~~~~~s~~Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr~l~~~g~~~~E~~~~~~~I~~Nii~~~~~li~~ 89 (359)
+.+++..++++|+++++++++..++.+||||||+||||||||+||||++|++||+++|+..|+++|+.|++++|+.|+++
T Consensus 33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~kiLLLG~geSGKSTi~KQ~ril~~~~~~~~E~~~~~~~I~~Nii~~~~~i~~~ 112 (389)
T PF00503_consen 33 EEKEQKKRSDDIDRQLEKDKKRSKREIKILLLGSGESGKSTILKQMRILYGPGFSEEERESYRPIIYSNIIQSMKQILEA 112 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEESTTSSHHHHHHHHHHHHST---HHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhccceEEEECCCCcchhhHHHHHHHHhCCCCchhhhhcceeeEecCchhhHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccC-------ccccHHHHHHHHccccccCccc--------CCcHHHHHHHHHhcCChHHHHHHHhccccccCcc
Q psy14891 90 MGILRINLQ-------SAKNKNYAKTILSTMCCFDEEF--------QMLPDVSTAMLALWQDRGVRLAVARGYEYELNDS 154 (359)
Q Consensus 90 ~~~l~i~~~-------~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~ 154 (359)
+..+++++. ++++...+..+........... .+++++++.|..||+||+||++|.++++++++|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d~ 192 (389)
T PF00503_consen 113 LEELGIPFSFSESSQLNEENQEIAEKLKEILDPLDSSEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPDN 192 (389)
T ss_dssp HHHTTCH-SSS-TT--STTHHHHHHHHHHHHCTTSTTCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--TT
T ss_pred HHHcCCCccccccccCCHHHHHHHHHHHhhhccccccccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhccccccc
Confidence 999999988 5777777777776555444311 3789999999999999999999999999999999
Q ss_pred hhHHhhcchhhccCCCccCccccccccccccceeEEEEee-CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCC
Q psy14891 155 ALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRL-GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGY 233 (359)
Q Consensus 155 ~~yfl~~~~ri~~~~y~Pt~~Dil~~r~~T~G~~~~~~~~-~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~y 233 (359)
+.|||++++||++++|.||.+||+++|.+|+|+.+..|.+ ++..++++|+|||+++|++|.+||+++++||||+|+|+|
T Consensus 193 ~~YFl~~l~RI~~~~Y~PT~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~y 272 (389)
T PF00503_consen 193 AKYFLDNLDRIAQPDYIPTDEDILRCRVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEY 272 (389)
T ss_dssp HHHHHTTHHHHHSTTB---HHHHHHS----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGG
T ss_pred HHHHhhhhhhhcCCCccCCCCCeeeecCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccch
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCc-cccccccccCC-CCCHHHHHHHHHH
Q psy14891 234 DMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRH-LRYYLSDFKGP-DFDVDSGALFIQH 311 (359)
Q Consensus 234 d~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~-l~~~fp~y~g~-~~~~~~a~~fi~~ 311 (359)
||+++||++.|||.+|+.+|+++|+++++.++|+|||+||.|+|++|+ +..+ |++|||+|.|+ +++++.|.+||++
T Consensus 273 dq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl--~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~ 350 (389)
T PF00503_consen 273 DQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKL--KKGPKLSKYFPDYTGDRPNDVDSAIKFIKN 350 (389)
T ss_dssp GSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHT--TTSSCGGGTSTTGGSH-TSSHHHHHHHHHH
T ss_pred hhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHc--cCCCchHhhCCCCCCCcccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 8887 99999999986 4899999999999
Q ss_pred HHhhhccCCC--CceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 312 KFALRNHNSA--KVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 312 ~f~~~~~~~~--~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
+|.++.+... +.+|+|+|||+|+++|+.+|++|.++|
T Consensus 351 ~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 351 KFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9999987654 899999999999999999999999986
No 7
>KOG0084|consensus
Probab=99.95 E-value=2.8e-27 Score=202.61 Aligned_cols=132 Identities=16% Similarity=0.203 Sum_probs=114.0
Q ss_pred cccccee--EEEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 182 VRTNGII--ETNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 182 ~~T~G~~--~~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
..|+|+. ...+.+.+ ++++||||+||+|||++..+||++|+|||||||+++ ..+|.....|+.++-
T Consensus 39 ~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~----------~~SF~~v~~Wi~Ei~ 108 (205)
T KOG0084|consen 39 ISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITK----------QESFNNVKRWIQEID 108 (205)
T ss_pred cceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEccc----------HHHhhhHHHHHHHhh
Confidence 4789955 45555554 899999999999999999999999999999999999 788888888888875
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceE-EEEeeccCCch
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIY-PHFTTATDTSN 336 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~-~~~tsA~d~~n 336 (359)
.. ...++|.+|||||+|+.+.+. .+.++|.+|+.+ ..+. +.+|||++..|
T Consensus 109 ~~-~~~~v~~lLVGNK~Dl~~~~~------------------v~~~~a~~fa~~----------~~~~~f~ETSAK~~~N 159 (205)
T KOG0084|consen 109 RY-ASENVPKLLVGNKCDLTEKRV------------------VSTEEAQEFADE----------LGIPIFLETSAKDSTN 159 (205)
T ss_pred hh-ccCCCCeEEEeeccccHhhee------------------cCHHHHHHHHHh----------cCCcceeecccCCccC
Confidence 43 457889999999999999888 889999988876 4455 88999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy14891 337 VQTVFHAVMDLVIKIN 352 (359)
Q Consensus 337 i~~vf~~v~~~Il~~~ 352 (359)
|+.+|..+...+.++.
T Consensus 160 Ve~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 160 VEDAFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988753
No 8
>KOG0092|consensus
Probab=99.95 E-value=7.3e-27 Score=199.36 Aligned_cols=131 Identities=15% Similarity=0.203 Sum_probs=115.6
Q ss_pred ccccc--eeEEEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 182 VRTNG--IIETNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 182 ~~T~G--~~~~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
.||+| +....+.+.+ ++|.||||||||+|+++-+.||||++++|.|||+++ ..+|..+..|+.++-
T Consensus 35 e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~----------~~SF~~aK~WvkeL~ 104 (200)
T KOG0092|consen 35 EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITD----------EESFEKAKNWVKELQ 104 (200)
T ss_pred ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEeccc----------HHHHHHHHHHHHHHH
Confidence 48888 4445555655 899999999999999999999999999999999999 899999999999986
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
.. ..+++-|.|+|||+||.+.|- ...++|..|..+ ....+++||||++.||
T Consensus 105 ~~-~~~~~vialvGNK~DL~~~R~------------------V~~~ea~~yAe~----------~gll~~ETSAKTg~Nv 155 (200)
T KOG0092|consen 105 RQ-ASPNIVIALVGNKADLLERRE------------------VEFEEAQAYAES----------QGLLFFETSAKTGENV 155 (200)
T ss_pred hh-CCCCeEEEEecchhhhhhccc------------------ccHHHHHHHHHh----------cCCEEEEEecccccCH
Confidence 54 347899999999999998776 789999999997 5677899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14891 338 QTVFHAVMDLVIKI 351 (359)
Q Consensus 338 ~~vf~~v~~~Il~~ 351 (359)
+++|.++.+.|...
T Consensus 156 ~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 156 NEIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHHHhccCc
Confidence 99999999998754
No 9
>KOG0078|consensus
Probab=99.94 E-value=5.7e-26 Score=197.25 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=114.1
Q ss_pred ccccceeE--EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 182 VRTNGIIE--TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 182 ~~T~G~~~--~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
..|+|+.. ..+..++ +++++|||+||+++|.+...||+++.+|+.|||+++ ..+++....|++.+=
T Consensus 42 ~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitn----------e~Sfeni~~W~~~I~ 111 (207)
T KOG0078|consen 42 ISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITN----------EKSFENIRNWIKNID 111 (207)
T ss_pred cceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccc----------hHHHHHHHHHHHHHH
Confidence 47888654 4555554 899999999999999999999999999999999999 788888888666664
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
.....++|++|||||+|+..+|. +..+.+.+++.+ ..+.+++|||+++.||
T Consensus 112 -e~a~~~v~~~LvGNK~D~~~~R~------------------V~~e~ge~lA~e----------~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 112 -EHASDDVVKILVGNKCDLEEKRQ------------------VSKERGEALARE----------YGIKFFETSAKTNFNI 162 (207)
T ss_pred -hhCCCCCcEEEeecccccccccc------------------ccHHHHHHHHHH----------hCCeEEEccccCCCCH
Confidence 44556999999999999988777 788999999988 6799999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14891 338 QTVFHAVMDLVIKI 351 (359)
Q Consensus 338 ~~vf~~v~~~Il~~ 351 (359)
.++|..+++.|+++
T Consensus 163 ~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 163 EEAFLSLARDILQK 176 (207)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999964
No 10
>KOG0086|consensus
Probab=99.93 E-value=4.2e-25 Score=181.12 Aligned_cols=130 Identities=18% Similarity=0.161 Sum_probs=108.6
Q ss_pred ccccee--EEEEeeC--CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 183 RTNGII--ETNFRLG--ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 183 ~T~G~~--~~~~~~~--~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
.|+|+. ...++++ .++++||||+||++||+...+||+++.+.++|+|+++ ..++.+.-.|+..+-.
T Consensus 40 HTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Ts----------rdsfnaLtnWL~DaR~ 109 (214)
T KOG0086|consen 40 HTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RDSFNALTNWLTDART 109 (214)
T ss_pred ceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccc----------hhhHHHHHHHHHHHHh
Confidence 366643 2344444 3899999999999999999999999999999999998 6666666666666532
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
-..+++.++|++||.||..++- ++..+|..|..+ +.+.+|+|||.+|+||+
T Consensus 110 -lAs~nIvviL~GnKkDL~~~R~------------------VtflEAs~FaqE----------nel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 110 -LASPNIVVILCGNKKDLDPERE------------------VTFLEASRFAQE----------NELMFLETSALTGENVE 160 (214)
T ss_pred -hCCCcEEEEEeCChhhcChhhh------------------hhHHHHHhhhcc----------cceeeeeecccccccHH
Confidence 2456889999999999988887 889999999887 66889999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14891 339 TVFHAVMDLVIKI 351 (359)
Q Consensus 339 ~vf~~v~~~Il~~ 351 (359)
+.|-.+..+|+.+
T Consensus 161 EaFl~c~~tIl~k 173 (214)
T KOG0086|consen 161 EAFLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999975
No 11
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.92 E-value=8.4e-24 Score=184.74 Aligned_cols=133 Identities=17% Similarity=0.284 Sum_probs=112.2
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
.||+|+....+.++++.+.+||+||++++|+.|.+||.+++++|||+|.++ .+++.++.+.+..+++++.
T Consensus 43 ~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd----------~~~l~e~~~~L~~ll~~~~ 112 (175)
T PF00025_consen 43 IPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSD----------PERLQEAKEELKELLNDPE 112 (175)
T ss_dssp EEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTG----------GGGHHHHHHHHHHHHTSGG
T ss_pred CcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEeccc----------ceeecccccchhhhcchhh
Confidence 589999999999999999999999999999999999999999999999999 8899999999999999988
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
..++|+++++||+|+.+. .+.++...++.-.. +. ..+.+.++.|||++++++.+.|
T Consensus 113 ~~~~piLIl~NK~D~~~~--------------------~~~~~i~~~l~l~~--l~--~~~~~~v~~~sa~~g~Gv~e~l 168 (175)
T PF00025_consen 113 LKDIPILILANKQDLPDA--------------------MSEEEIKEYLGLEK--LK--NKRPWSVFSCSAKTGEGVDEGL 168 (175)
T ss_dssp GTTSEEEEEEESTTSTTS--------------------STHHHHHHHTTGGG--TT--SSSCEEEEEEBTTTTBTHHHHH
T ss_pred cccceEEEEeccccccCc--------------------chhhHHHhhhhhhh--cc--cCCceEEEeeeccCCcCHHHHH
Confidence 889999999999997542 22333333222111 11 2477889999999999999999
Q ss_pred HHHHHHH
Q psy14891 342 HAVMDLV 348 (359)
Q Consensus 342 ~~v~~~I 348 (359)
+-+.+.|
T Consensus 169 ~WL~~~~ 175 (175)
T PF00025_consen 169 EWLIEQI 175 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9888765
No 12
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=4.8e-24 Score=187.28 Aligned_cols=134 Identities=19% Similarity=0.247 Sum_probs=107.9
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+..+++.+++||++||++++.+|.+||++++++|||+|+++ ..++.++..++..+++....
T Consensus 47 pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~----------~~s~~~~~~~l~~~l~~~~~ 116 (181)
T PLN00223 47 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RDRVVEARDELHRMLNEDEL 116 (181)
T ss_pred CCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcCHhh
Confidence 67777766777788999999999999999999999999999999999998 77899999999999887667
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.++|++|++||+|+... . +.++..+++ .+..-..+.+++..|||++++||.++|+
T Consensus 117 ~~~piilv~NK~Dl~~~-~-------------------~~~~~~~~l-----~l~~~~~~~~~~~~~Sa~~g~gv~e~~~ 171 (181)
T PLN00223 117 RDAVLLVFANKQDLPNA-M-------------------NAAEITDKL-----GLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
T ss_pred CCCCEEEEEECCCCCCC-C-------------------CHHHHHHHh-----CccccCCCceEEEeccCCCCCCHHHHHH
Confidence 78999999999998542 2 222222222 1221123567777899999999999999
Q ss_pred HHHHHHHHh
Q psy14891 343 AVMDLVIKI 351 (359)
Q Consensus 343 ~v~~~Il~~ 351 (359)
.+.+.+.++
T Consensus 172 ~l~~~~~~~ 180 (181)
T PLN00223 172 WLSNNIANK 180 (181)
T ss_pred HHHHHHhhc
Confidence 999888764
No 13
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.92 E-value=9.9e-24 Score=188.34 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=102.0
Q ss_pred eeEEEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCC
Q psy14891 187 IIETNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFRE 264 (359)
Q Consensus 187 ~~~~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~ 264 (359)
+....+.+++ +++++|||+||++++.+|..||++++++|+|||+++ ..++.++..|+..+ +.....+
T Consensus 37 ~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd----------~~Sf~~l~~w~~~i-~~~~~~~ 105 (202)
T cd04120 37 FKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMKMI-DKYASED 105 (202)
T ss_pred EEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHH-HHhCCCC
Confidence 4445566655 889999999999999999999999999999999999 88888887777654 4334567
Q ss_pred CeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHH
Q psy14891 265 ASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAV 344 (359)
Q Consensus 265 ~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v 344 (359)
+|++|++||+|+..++. ...+++.+|..+ .+.+.+++|||+++.||.++|..+
T Consensus 106 ~piilVgNK~DL~~~~~------------------v~~~~~~~~a~~---------~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 106 AELLLVGNKLDCETDRE------------------ISRQQGEKFAQQ---------ITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred CcEEEEEECcccccccc------------------cCHHHHHHHHHh---------cCCCEEEEecCCCCCCHHHHHHHH
Confidence 99999999999865443 455666666654 123567899999999999999999
Q ss_pred HHHHHHh
Q psy14891 345 MDLVIKI 351 (359)
Q Consensus 345 ~~~Il~~ 351 (359)
.+.+++.
T Consensus 159 ~~~~~~~ 165 (202)
T cd04120 159 VDDILKK 165 (202)
T ss_pred HHHHHHh
Confidence 9988764
No 14
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.91 E-value=1.4e-23 Score=185.48 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=103.9
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+++|||+||++++.+|..||++++++|+|||+++ .+++.+...|+..+... ..++|+
T Consensus 46 ~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~----------~~Sf~~~~~w~~~i~~~--~~~~pi 113 (189)
T cd04121 46 TTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITN----------RWSFDGIDRWIKEIDEH--APGVPK 113 (189)
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh--CCCCCE
Confidence 3344444 789999999999999999999999999999999999 89999998888888553 358999
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+|+|||.|+...+. .+.+++..|+.. ..+.+++|||+++.||+++|..+.+.
T Consensus 114 ilVGNK~DL~~~~~------------------v~~~~~~~~a~~----------~~~~~~e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 114 ILVGNRLHLAFKRQ------------------VATEQAQAYAER----------NGMTFFEVSPLCNFNITESFTELARI 165 (189)
T ss_pred EEEEECccchhccC------------------CCHHHHHHHHHH----------cCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 99999999966544 567788888865 45678999999999999999999998
Q ss_pred HHHh
Q psy14891 348 VIKI 351 (359)
Q Consensus 348 Il~~ 351 (359)
++..
T Consensus 166 i~~~ 169 (189)
T cd04121 166 VLMR 169 (189)
T ss_pred HHHh
Confidence 8753
No 15
>KOG0070|consensus
Probab=99.91 E-value=7.2e-24 Score=180.50 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=113.1
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
+||+|++...+.+++++|++||+|||++.|..|.+||.+.+++|||+|.+| ..|+.++.+.+..+++++.
T Consensus 46 vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~D----------r~Ri~eak~eL~~~l~~~~ 115 (181)
T KOG0070|consen 46 VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSD----------RERIEEAKEELHRMLAEPE 115 (181)
T ss_pred CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCc----------HHHHHHHHHHHHHHHcCcc
Confidence 499999999999999999999999999999999999999999999999999 9999999999999999998
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
+.++|+++++||+|+... + ++.+..+.+ .+..-..+.-+.+.|||.+|+++.+.+
T Consensus 116 l~~~~llv~aNKqD~~~a-l-------------------s~~ei~~~L-----~l~~l~~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 116 LRNAPLLVFANKQDLPGA-L-------------------SAAEITNKL-----GLHSLRSRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred cCCceEEEEechhhcccc-C-------------------CHHHHHhHh-----hhhccCCCCcEEeeccccccccHHHHH
Confidence 899999999999998753 2 112211111 111112377888999999999999999
Q ss_pred HHHHHHHHH
Q psy14891 342 HAVMDLVIK 350 (359)
Q Consensus 342 ~~v~~~Il~ 350 (359)
+-+.+.+-+
T Consensus 171 ~wl~~~~~~ 179 (181)
T KOG0070|consen 171 DWLSNNLKK 179 (181)
T ss_pred HHHHHHHhc
Confidence 988877653
No 16
>KOG0073|consensus
Probab=99.91 E-value=1.3e-23 Score=174.61 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=111.0
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
.||.|+..+++.++++++++||+|||...|+.|.+||+.++|+|||+|++| .-||.+....+.+++....
T Consensus 45 ~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD----------~~r~~e~~~~L~~lL~eer 114 (185)
T KOG0073|consen 45 SPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSD----------RMRMQECKQELTELLVEER 114 (185)
T ss_pred CCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECch----------HHHHHHHHHHHHHHHhhhh
Confidence 489999999999999999999999999999999999999999999999999 9999999999999999888
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
...+|+++++||+|+..+ + +. ++...+.+ +.. +.+ ...+...-+||.+|+++..-|
T Consensus 115 laG~~~Lvlank~dl~~~-l--~~--------------~~i~~~~~-L~~----l~k--s~~~~l~~cs~~tge~l~~gi 170 (185)
T KOG0073|consen 115 LAGAPLLVLANKQDLPGA-L--SL--------------EEISKALD-LEE----LAK--SHHWRLVKCSAVTGEDLLEGI 170 (185)
T ss_pred hcCCceEEEEecCcCccc-c--CH--------------HHHHHhhC-HHH----hcc--ccCceEEEEeccccccHHHHH
Confidence 899999999999998742 2 00 11111110 011 111 255667789999999999999
Q ss_pred HHHHHHHHHh
Q psy14891 342 HAVMDLVIKI 351 (359)
Q Consensus 342 ~~v~~~Il~~ 351 (359)
+-+.+.+..+
T Consensus 171 dWL~~~l~~r 180 (185)
T KOG0073|consen 171 DWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHH
Confidence 9888888763
No 17
>KOG0080|consensus
Probab=99.91 E-value=1.5e-23 Score=173.36 Aligned_cols=131 Identities=16% Similarity=0.163 Sum_probs=108.3
Q ss_pred ccccee--EEEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 183 RTNGII--ETNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 183 ~T~G~~--~~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
.|+|+. ...+.+++ +++.||||+|||+||.+.++||+++.+||.|||++. ...|...-.|..++-.
T Consensus 42 ~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~----------Rdtf~kLd~W~~Eld~ 111 (209)
T KOG0080|consen 42 TTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTS----------RDTFVKLDIWLKELDL 111 (209)
T ss_pred ceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccc----------hhhHHhHHHHHHHHHh
Confidence 468844 45556654 899999999999999999999999999999999998 6666655555555533
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
.....++-.+||+||+|...+|. ++-++..+|+++ .++-++++||++.+||+
T Consensus 112 Ystn~diikmlVgNKiDkes~R~------------------V~reEG~kfAr~----------h~~LFiE~SAkt~~~V~ 163 (209)
T KOG0080|consen 112 YSTNPDIIKMLVGNKIDKESERV------------------VDREEGLKFARK----------HRCLFIECSAKTRENVQ 163 (209)
T ss_pred hcCCccHhHhhhcccccchhccc------------------ccHHHHHHHHHh----------hCcEEEEcchhhhccHH
Confidence 33345778899999999776777 889999999997 66788999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14891 339 TVFHAVMDLVIKI 351 (359)
Q Consensus 339 ~vf~~v~~~Il~~ 351 (359)
.+|+.++..|++.
T Consensus 164 ~~FeelveKIi~t 176 (209)
T KOG0080|consen 164 CCFEELVEKIIET 176 (209)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999863
No 18
>KOG0071|consensus
Probab=99.91 E-value=1.7e-23 Score=169.45 Aligned_cols=129 Identities=19% Similarity=0.270 Sum_probs=112.9
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
+||+||+...+++++++|.+||+|||.+.|+.|.|||.+..++|||+|.++ .+|++++.+.+.++++++.
T Consensus 46 ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~----------~dr~eeAr~ELh~ii~~~e 115 (180)
T KOG0071|consen 46 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIEEARNELHRIINDRE 115 (180)
T ss_pred ccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccc----------hhhHHHHHHHHHHHhCCHh
Confidence 589999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
..++|+++++||+|+.... .+.+..+|+ ++.+.+.+.-+...+||.++++..+-|
T Consensus 116 m~~~~~LvlANkQDlp~A~--------------------~pqei~d~l-----eLe~~r~~~W~vqp~~a~~gdgL~egl 170 (180)
T KOG0071|consen 116 MRDAIILILANKQDLPDAM--------------------KPQEIQDKL-----ELERIRDRNWYVQPSCALSGDGLKEGL 170 (180)
T ss_pred hhcceEEEEecCccccccc--------------------CHHHHHHHh-----ccccccCCccEeeccccccchhHHHHH
Confidence 9999999999999998753 244544443 334444578888899999999998887
Q ss_pred HHHH
Q psy14891 342 HAVM 345 (359)
Q Consensus 342 ~~v~ 345 (359)
.-+.
T Consensus 171 swls 174 (180)
T KOG0071|consen 171 SWLS 174 (180)
T ss_pred HHHH
Confidence 7554
No 19
>KOG0098|consensus
Probab=99.90 E-value=3.9e-23 Score=175.27 Aligned_cols=131 Identities=17% Similarity=0.172 Sum_probs=112.5
Q ss_pred ccccee--EEEEee--CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 183 RTNGII--ETNFRL--GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 183 ~T~G~~--~~~~~~--~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
.|+|+. ...+++ +.++++||||+||++||+....||+++.++|+|||++. ..+|...-.|+..+.+
T Consensus 37 ~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~----------r~sF~hL~~wL~D~rq 106 (216)
T KOG0098|consen 37 LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITR----------RESFNHLTSWLEDARQ 106 (216)
T ss_pred ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccc----------hhhHHHHHHHHHHHHH
Confidence 577743 344455 45999999999999999999999999999999999998 7888888888888876
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
+. ..|..|+|+|||+||...+- ++.+++..|+++ +.+-+.+|||++++||+
T Consensus 107 ~~-~~NmvImLiGNKsDL~~rR~------------------Vs~EEGeaFA~e----------hgLifmETSakt~~~VE 157 (216)
T KOG0098|consen 107 HS-NENMVIMLIGNKSDLEARRE------------------VSKEEGEAFARE----------HGLIFMETSAKTAENVE 157 (216)
T ss_pred hc-CCCcEEEEEcchhhhhcccc------------------ccHHHHHHHHHH----------cCceeehhhhhhhhhHH
Confidence 53 47899999999999987666 788999999998 55666799999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy14891 339 TVFHAVMDLVIKIN 352 (359)
Q Consensus 339 ~vf~~v~~~Il~~~ 352 (359)
++|......|+++.
T Consensus 158 EaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 158 EAFINTAKEIYRKI 171 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
No 20
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.90 E-value=7.6e-23 Score=178.55 Aligned_cols=131 Identities=20% Similarity=0.264 Sum_probs=102.3
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+..+++.+++||++|+++++.+|.+||++++++|||+|+++ ..++.++.+++..+++....
T Consensus 43 ~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~----------~~s~~~~~~~l~~~~~~~~~ 112 (175)
T smart00177 43 PTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND----------RDRIDEAREELHRMLNEDEL 112 (175)
T ss_pred CccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHhhCHhh
Confidence 56665555566678899999999999999999999999999999999998 78899999999999876656
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.++|++|++||+|+.+. . +.++..+.+. ......+.++++.|||++++||.++|+
T Consensus 113 ~~~piilv~NK~Dl~~~-~-------------------~~~~i~~~~~-----~~~~~~~~~~~~~~Sa~~g~gv~e~~~ 167 (175)
T smart00177 113 RDAVILVFANKQDLPDA-M-------------------KAAEITEKLG-----LHSIRDRNWYIQPTCATSGDGLYEGLT 167 (175)
T ss_pred cCCcEEEEEeCcCcccC-C-------------------CHHHHHHHhC-----ccccCCCcEEEEEeeCCCCCCHHHHHH
Confidence 78999999999998542 1 1122111111 111123567888899999999999999
Q ss_pred HHHHHH
Q psy14891 343 AVMDLV 348 (359)
Q Consensus 343 ~v~~~I 348 (359)
.+.+.+
T Consensus 168 ~l~~~~ 173 (175)
T smart00177 168 WLSNNL 173 (175)
T ss_pred HHHHHh
Confidence 887764
No 21
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.90 E-value=5.4e-23 Score=178.33 Aligned_cols=129 Identities=21% Similarity=0.288 Sum_probs=101.1
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+...++.+++|||+|+++++..|..||++++++|||+|+++ ..++.++..++.++++....
T Consensus 39 ~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~----------~~s~~~~~~~~~~~~~~~~~ 108 (168)
T cd04149 39 PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIDEARQELHRIINDREM 108 (168)
T ss_pred CCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc----------hhhHHHHHHHHHHHhcCHhh
Confidence 45555545555677899999999999999999999999999999999998 67899999999999877666
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.++|++|++||+|+.+ +. +.+++.+++. +.+...+.+.+++|||++++||.++|+
T Consensus 109 ~~~piilv~NK~Dl~~-~~-------------------~~~~i~~~~~-----~~~~~~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 109 RDALLLVFANKQDLPD-AM-------------------KPHEIQEKLG-----LTRIRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred cCCcEEEEEECcCCcc-CC-------------------CHHHHHHHcC-----CCccCCCcEEEEEeeCCCCCChHHHHH
Confidence 7899999999999854 12 3344444432 111123456788999999999999998
Q ss_pred HHHH
Q psy14891 343 AVMD 346 (359)
Q Consensus 343 ~v~~ 346 (359)
.+.+
T Consensus 164 ~l~~ 167 (168)
T cd04149 164 WLSS 167 (168)
T ss_pred HHhc
Confidence 7754
No 22
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.90 E-value=9e-23 Score=175.24 Aligned_cols=129 Identities=21% Similarity=0.283 Sum_probs=99.5
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+....+.+.+||++||++++.+|..||++++++|||+|+++ ..++.++.+++.+++..+..
T Consensus 30 pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~~ 99 (159)
T cd04150 30 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERIGEAREELQRMLNEDEL 99 (159)
T ss_pred CCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhcHHh
Confidence 45565555566678999999999999999999999999999999999998 78899999999999877666
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.++|++|++||+|+... . ..++... ++ ..+....+.++++.+||++++||+++|+
T Consensus 100 ~~~piilv~NK~Dl~~~-~-------------------~~~~i~~----~~-~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 100 RDAVLLVFANKQDLPNA-M-------------------SAAEVTD----KL-GLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred cCCCEEEEEECCCCCCC-C-------------------CHHHHHH----Hh-CccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 78999999999998531 2 1111111 11 1111123567778899999999999998
Q ss_pred HHHH
Q psy14891 343 AVMD 346 (359)
Q Consensus 343 ~v~~ 346 (359)
.+.+
T Consensus 155 ~l~~ 158 (159)
T cd04150 155 WLSN 158 (159)
T ss_pred HHhc
Confidence 7753
No 23
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=1.1e-22 Score=178.70 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=104.4
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+...++.+++|||+|+++++.+|.+||++++++|||+|+++ .+++.++..++..++.....
T Consensus 47 ~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~----------~~s~~~~~~~l~~~~~~~~~ 116 (182)
T PTZ00133 47 PTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSND----------RERIGDAREELERMLSEDEL 116 (182)
T ss_pred CccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhCHhh
Confidence 55665555566678999999999999999999999999999999999998 78899999999998876666
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.++|++|++||.|+.+ .. +.++....+. +...+.+.++++.|||++++||+++|+
T Consensus 117 ~~~piilv~NK~Dl~~-~~-------------------~~~~i~~~l~-----~~~~~~~~~~~~~~Sa~tg~gv~e~~~ 171 (182)
T PTZ00133 117 RDAVLLVFANKQDLPN-AM-------------------STTEVTEKLG-----LHSVRQRNWYIQGCCATTAQGLYEGLD 171 (182)
T ss_pred cCCCEEEEEeCCCCCC-CC-------------------CHHHHHHHhC-----CCcccCCcEEEEeeeCCCCCCHHHHHH
Confidence 7899999999999854 12 1222222111 111123567777899999999999999
Q ss_pred HHHHHHHHh
Q psy14891 343 AVMDLVIKI 351 (359)
Q Consensus 343 ~v~~~Il~~ 351 (359)
.+.+.+.++
T Consensus 172 ~l~~~i~~~ 180 (182)
T PTZ00133 172 WLSANIKKS 180 (182)
T ss_pred HHHHHHHHh
Confidence 998877654
No 24
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.89 E-value=3e-22 Score=174.29 Aligned_cols=117 Identities=13% Similarity=0.165 Sum_probs=97.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|+++++.+|..||++++++|+|+|+++ ..++.....|+..+-......++|++|++||+|+
T Consensus 50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~----------~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl 119 (172)
T cd04141 50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTD----------RHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDL 119 (172)
T ss_pred EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCc----------hhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhh
Confidence 678999999999999999999999999999999999 7888887776665544333457999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
..++. .+.+++.++.++ ..+.+++|||+++.||.++|+.+...+++.
T Consensus 120 ~~~~~------------------v~~~~~~~~a~~----------~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 120 ESQRQ------------------VTTEEGRNLARE----------FNCPFFETSAALRHYIDDAFHGLVREIRRK 166 (172)
T ss_pred hhcCc------------------cCHHHHHHHHHH----------hCCEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 76543 566677777654 346778999999999999999999888764
No 25
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.89 E-value=2.5e-22 Score=177.86 Aligned_cols=129 Identities=13% Similarity=0.193 Sum_probs=97.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHH-HHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLN-LFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~-~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++|||+||++++.+|..||++++++|+|||+++ ..++.+... |...+... ..++|++|+|||.|
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~D 118 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS----------PSSYENVRHKWHPEVCHH--CPNVPILLVGTKKD 118 (191)
T ss_pred EEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChh
Confidence 789999999999999999999999999999999999 788887765 44445432 35799999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
|.+.+- ....+ .+..-...+.+++.+|..+ .+.+.+++|||+++.||+++|..+.+.++..+
T Consensus 119 L~~~~~--~~~~~----~~~~~~~v~~~~~~~~a~~---------~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 119 LRNDAD--TLKKL----KEQGQAPITPQQGGALAKQ---------IHAVKYLECSALNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred hhcChh--hHHHH----hhccCCCCCHHHHHHHHHH---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHhccc
Confidence 865321 00011 0111111466777777665 12356789999999999999999999888754
No 26
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.89 E-value=3.5e-22 Score=180.50 Aligned_cols=160 Identities=19% Similarity=0.152 Sum_probs=110.7
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|.......+..+.+.+|||+||++++.+|..||++++++|+|||+++ ..++.+...||..+... ..
T Consensus 30 ~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~----------~~Sf~~l~~~~~~l~~~-~~ 98 (220)
T cd04126 30 STVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN----------VQSLEELEDRFLGLTDT-AN 98 (220)
T ss_pred CccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cC
Confidence 34443333333455789999999999999999999999999999999999 78888888899888754 34
Q ss_pred CCCeEEEEeeCCCcchhhhhh--cCCccccccccccCCCCCHHHHHHHHHHHH--hh--hccCCCCceEEEEeeccCCch
Q psy14891 263 REASFILFLNKFDLFREKILY--SGRHLRYYLSDFKGPDFDVDSGALFIQHKF--AL--RNHNSAKVIYPHFTTATDTSN 336 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~--~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f--~~--~~~~~~~~i~~~~tsA~d~~n 336 (359)
.++|++||+||+|+.+....+ .+.+- +..++......+.+++.+|+++.- .. .+-.+...+.+++|||+++.|
T Consensus 99 ~~~piIlVgNK~DL~~~~~~~~~~~~~~-~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~ 177 (220)
T cd04126 99 EDCLFAVVGNKLDLTEEGALAGQEKDAG-DRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYN 177 (220)
T ss_pred CCCcEEEEEECccccccccccccccccc-ccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCC
Confidence 578999999999996522100 00010 001111111267889999887621 00 000111236688999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy14891 337 VQTVFHAVMDLVIKINLQ 354 (359)
Q Consensus 337 i~~vf~~v~~~Il~~~l~ 354 (359)
|+++|..+.+.++...++
T Consensus 178 V~elf~~i~~~~~~~~~~ 195 (220)
T cd04126 178 VDELFEYLFNLVLPLILA 195 (220)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988865443
No 27
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=2.8e-22 Score=182.27 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=98.4
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHH-HHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDES-LNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es-~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.++||||+||+.++.++..||++++++|+|||+++ .+++... ..|+..+... ..++|++|||||+|
T Consensus 61 v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~D 128 (232)
T cd04174 61 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR----------PETVDSALKKWKAEIMDY--CPSTRILLIGCKTD 128 (232)
T ss_pred EEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCC----------hHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcc
Confidence 789999999999999999999999999999999999 7888875 4566655432 24789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCc-hHHHHHHHHHHHHHHhhh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTS-NVQTVFHAVMDLVIKINL 353 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~-ni~~vf~~v~~~Il~~~l 353 (359)
+..+.- ....+. -.-... .+.+++.+|+.+ ..+ .+++|||++++ ||+++|..++..+++..+
T Consensus 129 L~~~~~--~~~~l~---~~~~~~-Vs~~e~~~~a~~----------~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 129 LRTDLS--TLMELS---NQKQAP-ISYEQGCALAKQ----------LGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred cccccc--hhhhhc---cccCCc-CCHHHHHHHHHH----------cCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 854210 000000 000011 678889999876 344 46899999998 899999999999988654
Q ss_pred h
Q psy14891 354 Q 354 (359)
Q Consensus 354 ~ 354 (359)
.
T Consensus 193 ~ 193 (232)
T cd04174 193 P 193 (232)
T ss_pred c
Confidence 4
No 28
>KOG0394|consensus
Probab=99.89 E-value=2.1e-22 Score=170.52 Aligned_cols=133 Identities=13% Similarity=0.183 Sum_probs=106.9
Q ss_pred cccc--eeEEEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 183 RTNG--IIETNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 183 ~T~G--~~~~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
.||| +....+.+++ +.++|||||||++|+++-..+||++|+++.|||+.+ ..++...-.|-++.+.
T Consensus 40 aTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~----------~~Sfe~L~~Wr~EFl~ 109 (210)
T KOG0394|consen 40 ATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNN----------PKSFENLENWRKEFLI 109 (210)
T ss_pred cccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCC----------hhhhccHHHHHHHHHH
Confidence 4666 3344555544 899999999999999999999999999999999998 5555555555555554
Q ss_pred c---cCCCCCeEEEEeeCCCcchh--hhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccC
Q psy14891 259 N---RYFREASFILFLNKFDLFRE--KILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATD 333 (359)
Q Consensus 259 ~---~~~~~~~iiL~~NK~Dl~~~--k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d 333 (359)
. .....-|+||+|||+|+... |. ++.+.|..|.+. ++.+.+|+||||+
T Consensus 110 qa~~~~Pe~FPFVilGNKiD~~~~~~r~------------------VS~~~Aq~WC~s---------~gnipyfEtSAK~ 162 (210)
T KOG0394|consen 110 QASPQDPETFPFVILGNKIDVDGGKSRQ------------------VSEKKAQTWCKS---------KGNIPYFETSAKE 162 (210)
T ss_pred hcCCCCCCcccEEEEcccccCCCCccce------------------eeHHHHHHHHHh---------cCCceeEEecccc
Confidence 3 23346799999999999763 34 678899999998 4778999999999
Q ss_pred CchHHHHHHHHHHHHHHhh
Q psy14891 334 TSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 334 ~~ni~~vf~~v~~~Il~~~ 352 (359)
..||..+|..+....|...
T Consensus 163 ~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 163 ATNVDEAFEEIARRALANE 181 (210)
T ss_pred cccHHHHHHHHHHHHHhcc
Confidence 9999999999999888764
No 29
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.89 E-value=4.5e-22 Score=173.96 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=96.8
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+++++|||+||+++++++..||++++++|+|||+++ .+++.+.. .|+..+-... .++|++|+|||+|
T Consensus 49 v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~----------~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~D 116 (176)
T cd04133 49 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLIS----------RASYENVLKKWVPELRHYA--PNVPIVLVGTKLD 116 (176)
T ss_pred EEEEEEECCCCccccccchhhcCCCcEEEEEEEcCC----------HHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChh
Confidence 789999999999999999999999999999999999 88888874 6777765432 4799999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
+.+++. ... .+......+.+++.++..+ ..+ .+++|||+++.||+++|..+.+.+++
T Consensus 117 l~~~~~--~~~------~~~~~~~v~~~~~~~~a~~----------~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 117 LRDDKQ--YLA------DHPGASPITTAQGEELRKQ----------IGAAAYIECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred hccChh--hhh------hccCCCCCCHHHHHHHHHH----------cCCCEEEECCCCcccCHHHHHHHHHHHHhc
Confidence 966542 100 0000111567788888765 334 47899999999999999999987653
No 30
>KOG0094|consensus
Probab=99.89 E-value=1.3e-22 Score=173.33 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=112.4
Q ss_pred ccccceeE--EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 182 VRTNGIIE--TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 182 ~~T~G~~~--~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
.+|||+.. .++.+.+ +.|++|||+|||+||++-+.|+++++++|.|||+++ .++|+...+|++.+.
T Consensus 52 qATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~----------~~Sfe~t~kWi~dv~ 121 (221)
T KOG0094|consen 52 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITD----------RNSFENTSKWIEDVR 121 (221)
T ss_pred cceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccc----------cchHHHHHHHHHHHH
Confidence 47899654 4455544 899999999999999999999999999999999999 999999999999999
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
+.+...++-|+|||||.||.+++. ...+++..-.++ .+..+.+|||+.|.||
T Consensus 122 ~e~gs~~viI~LVGnKtDL~dkrq------------------vs~eEg~~kAke----------l~a~f~etsak~g~NV 173 (221)
T KOG0094|consen 122 RERGSDDVIIFLVGNKTDLSDKRQ------------------VSIEEGERKAKE----------LNAEFIETSAKAGENV 173 (221)
T ss_pred hccCCCceEEEEEcccccccchhh------------------hhHHHHHHHHHH----------hCcEEEEecccCCCCH
Confidence 988777789999999999998776 555666544443 4567789999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14891 338 QTVFHAVMDLVIKI 351 (359)
Q Consensus 338 ~~vf~~v~~~Il~~ 351 (359)
+.+|..|+..+...
T Consensus 174 k~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 174 KQLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHHhccCc
Confidence 99999998877654
No 31
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.89 E-value=3.4e-22 Score=175.68 Aligned_cols=127 Identities=18% Similarity=0.172 Sum_probs=95.5
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.+.+++|||+||++++.+|..||++++++|+|||+++ ..++.+.. .|+..+... ..++|++|+|||+
T Consensus 52 ~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~----------~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~ 119 (182)
T cd04172 52 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 119 (182)
T ss_pred EEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEeECh
Confidence 3789999999999999999999999999999999999 78888864 565555432 3579999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCc-eEEEEeeccCCch-HHHHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKV-IYPHFTTATDTSN-VQTVFHAVMDLVIK 350 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~-i~~~~tsA~d~~n-i~~vf~~v~~~Il~ 350 (359)
||.+..- ....+. .-.....+.+++.+|+++ .. +.+++|||++++| |+++|..+...++.
T Consensus 120 DL~~~~~--~~~~~~----~~~~~~v~~~~~~~~a~~----------~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 120 DLRTDLT--TLVELS----NHRQTPVSYDQGANMAKQ----------IGAATYIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred hhhcChh--hHHHHH----hcCCCCCCHHHHHHHHHH----------cCCCEEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 9854211 000000 000011678889999876 34 4678999999999 99999998886553
No 32
>KOG0087|consensus
Probab=99.89 E-value=1.1e-22 Score=176.00 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=126.0
Q ss_pred hcchhhccCCCccCccccccccccccceeE--EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCcc
Q psy14891 160 ENMERICDLKYVPNATDVLRARVRTNGIIE--TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDM 235 (359)
Q Consensus 160 ~~~~ri~~~~y~Pt~~Dil~~r~~T~G~~~--~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~ 235 (359)
+.+.|+..++|.+.. .+|+|+.. ..+.+++ ++.+||||+||++||.....||+++.|+++|||++.
T Consensus 29 nLlsRftrnEF~~~S-------ksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr--- 98 (222)
T KOG0087|consen 29 NLLSRFTRNEFSLES-------KSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITR--- 98 (222)
T ss_pred HHHHHhcccccCccc-------ccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechh---
Confidence 346788888888866 48999654 4455555 899999999999999999999999999999999998
Q ss_pred ccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhh
Q psy14891 236 TLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFAL 315 (359)
Q Consensus 236 ~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~ 315 (359)
...++....|+.++-.+ ...+++|+|+|||+||-.-|. +..+++..|...
T Consensus 99 -------~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lra------------------V~te~~k~~Ae~---- 148 (222)
T KOG0087|consen 99 -------RQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLRA------------------VPTEDGKAFAEK---- 148 (222)
T ss_pred -------HHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhccc------------------cchhhhHhHHHh----
Confidence 77888778888888665 457999999999999977555 678889999886
Q ss_pred hccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhhhh
Q psy14891 316 RNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQ 354 (359)
Q Consensus 316 ~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l~ 354 (359)
..+++++|||.+..||+.+|..+...|++..-+
T Consensus 149 ------~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 149 ------EGLFFLETSALDATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred ------cCceEEEecccccccHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999876543
No 33
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.89 E-value=8.6e-22 Score=169.88 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=96.3
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+++.+||++|+++++..|..++++++++|+|+|+++ ..++.....|+..+.... ..++|++|++||+|+
T Consensus 51 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl 119 (166)
T cd04122 51 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADL 119 (166)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccc
Confidence 688999999999999999999999999999999998 778888778877765432 357899999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
..++. .+.+++.+++.. ..+.++++||++++||.++|..+...+++
T Consensus 120 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 120 EAQRD------------------VTYEEAKQFADE----------NGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred ccccC------------------cCHHHHHHHHHH----------cCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 76544 456777777654 34567899999999999999999988765
No 34
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.88 E-value=1e-21 Score=171.41 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=98.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++||++++..|..++++++++|+|+|+++ ..++.+...|+..+.......+.|++|++||+|+
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 132 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTN----------EQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL 132 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccc
Confidence 678999999999999999999999999999999998 7888888888888766544567899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
.+++. ...+++..+... ..+.+++|||+++.||+++|+.+.+.++++
T Consensus 133 ~~~~~------------------v~~~~~~~~~~~----------~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 133 EDQRQ------------------VSEEQAKALADK----------YGIPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred hhcCc------------------cCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 76543 455667666654 335678999999999999999999988754
No 35
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=1.2e-21 Score=174.78 Aligned_cols=119 Identities=13% Similarity=0.118 Sum_probs=97.5
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc---cCCCCCeEEEEee
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN---RYFREASFILFLN 272 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~---~~~~~~~iiL~~N 272 (359)
.+.+++|||+|+++++.+|..||++++++|+|||+++ ..++.++..|+..+.+. +...++|++|++|
T Consensus 49 ~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~----------~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~N 118 (201)
T cd04107 49 VVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTR----------PSTFEAVLKWKADLDSKVTLPNGEPIPCLLLAN 118 (201)
T ss_pred EEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence 3789999999999999999999999999999999998 78888887777766432 2235789999999
Q ss_pred CCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 273 KFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 273 K~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
|+|+..++. ...+++.++.... ....+++|||+++.||.++|..+.+.+++.
T Consensus 119 K~Dl~~~~~------------------~~~~~~~~~~~~~---------~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 119 KCDLKKRLA------------------KDGEQMDQFCKEN---------GFIGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred CCCcccccc------------------cCHHHHHHHHHHc---------CCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999975333 4567777777651 225678999999999999999999988764
No 36
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.88 E-value=8.8e-22 Score=170.66 Aligned_cols=134 Identities=18% Similarity=0.264 Sum_probs=106.0
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+..+++.+++|||+|+++++..|..||++++++|||+|+++ .+++.++..++..+.+....
T Consensus 29 ~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~----------~~s~~~~~~~~~~~~~~~~~ 98 (169)
T cd04158 29 PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH----------RDRVSEAHSELAKLLTEKEL 98 (169)
T ss_pred CcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcChhh
Confidence 56666556667778999999999999999999999999999999999998 78899999999999876666
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|++|++||+|+.+ ++ +.+++.+++. +.... ..+.+++.+|||+++.||+++|+
T Consensus 99 ~~~piilv~NK~Dl~~-~~-------------------~~~~~~~~~~--~~~~~--~~~~~~~~~~Sa~~g~gv~~~f~ 154 (169)
T cd04158 99 RDALLLIFANKQDVAG-AL-------------------SVEEMTELLS--LHKLC--CGRSWYIQGCDARSGMGLYEGLD 154 (169)
T ss_pred CCCCEEEEEeCcCccc-CC-------------------CHHHHHHHhC--Ccccc--CCCcEEEEeCcCCCCCCHHHHHH
Confidence 7789999999999854 22 3444444432 11110 12346777899999999999999
Q ss_pred HHHHHHHH
Q psy14891 343 AVMDLVIK 350 (359)
Q Consensus 343 ~v~~~Il~ 350 (359)
.+.+.+..
T Consensus 155 ~l~~~~~~ 162 (169)
T cd04158 155 WLSRQLVA 162 (169)
T ss_pred HHHHHHhh
Confidence 99877654
No 37
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.88 E-value=1.3e-21 Score=170.94 Aligned_cols=124 Identities=13% Similarity=0.200 Sum_probs=93.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHH-HHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLN-LFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~-~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++||++||++++.+|..||++++++|+|+|+++ ..++.+... |+..+... ..++|++|++||+|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~D 116 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH--CPKTPFLLVGTQID 116 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHh
Confidence 788999999999999999999999999999999998 777877765 55555332 25789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+..+.. ....+ ..+.....+.+++.++.++ .+.+.+++|||+++.||+++|+.+.+.
T Consensus 117 l~~~~~--~~~~l----~~~~~~~v~~~~~~~~a~~---------~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 117 LRDDPS--TIEKL----AKNKQKPITPETGEKLARD---------LKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred hhhChh--hHHHh----hhccCCCcCHHHHHHHHHH---------hCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 865322 11111 1111112567778888664 133678899999999999999988763
No 38
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=1.3e-21 Score=171.29 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=94.2
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+++++|||+||+.++.++..||++++++|+|||+++ ..++.+.+ .|+..+... ..++|++|||||+|
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~----------~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~D 116 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISR----------PETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTD 116 (178)
T ss_pred EEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChh
Confidence 789999999999999999999999999999999999 78888864 566555443 25789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCch-HHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSN-VQTVFHAVMDLVI 349 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~n-i~~vf~~v~~~Il 349 (359)
|.++.- ....+ .+......+.+++.+|.++ ..+ .+++|||++++| |+++|..+....+
T Consensus 117 L~~~~~--~~~~~----~~~~~~~v~~~e~~~~a~~----------~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 117 LRTDLS--TLMEL----SHQRQAPVSYEQGCAIAKQ----------LGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred hhcChh--HHHHH----HhcCCCCCCHHHHHHHHHH----------hCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 854211 00000 0001111678889988876 333 578999999996 9999999888654
No 39
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.88 E-value=1.8e-21 Score=166.66 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=92.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+|+++++.+|..|+++++++++|+|+++ ..++.+...|+..+.......++|++|++||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 118 (163)
T cd04136 49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITS----------QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDL 118 (163)
T ss_pred EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 678899999999999999999999999999999998 7788888888888876544568999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
..++. ...+++..+.+. ..+.++++||+++.||.++|..+.+.+
T Consensus 119 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 119 EDERV------------------VSREEGQALARQ----------WGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred cccce------------------ecHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 65433 344445555432 225678999999999999999988765
No 40
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.87 E-value=2.6e-21 Score=166.34 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=95.4
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+++|||+||++++.+|..|+++++++|+|+|+++ ..++.+..+|+..+.+.....+.|++|++||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 117 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 117 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence 3678899999999999999999999999999999998 788888888888887765567899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
+..++. .+.+++..+.+. ..+.+++|||+++.||+++|..+.+.+
T Consensus 118 l~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 118 LEDERV------------------VGKEQGQNLARQ----------WGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred chhccE------------------EcHHHHHHHHHH----------hCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 876544 344555555443 235678999999999999999988754
No 41
>KOG0079|consensus
Probab=99.87 E-value=5.5e-22 Score=162.02 Aligned_cols=135 Identities=19% Similarity=0.260 Sum_probs=119.1
Q ss_pred cccccce--eEEEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHH
Q psy14891 181 RVRTNGI--IETNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQV 256 (359)
Q Consensus 181 r~~T~G~--~~~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i 256 (359)
+..|+|+ ...++.+.+ ++++|||++|||+||.+...||++.++++.|||+++ .++|.....|++++
T Consensus 37 YitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn----------~ESF~Nv~rWLeei 106 (198)
T KOG0079|consen 37 YITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN----------GESFNNVKRWLEEI 106 (198)
T ss_pred eEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcc----------hhhhHhHHHHHHHH
Confidence 4678894 445566654 999999999999999999999999999999999999 89999999999999
Q ss_pred HhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCch
Q psy14891 257 VNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSN 336 (359)
Q Consensus 257 ~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~n 336 (359)
-++. ..+|-+|+|||.|..+.|. .+.++|..|... -.+.+|+|||++.+|
T Consensus 107 ~~nc--dsv~~vLVGNK~d~~~Rrv------------------V~t~dAr~~A~~----------mgie~FETSaKe~~N 156 (198)
T KOG0079|consen 107 RNNC--DSVPKVLVGNKNDDPERRV------------------VDTEDARAFALQ----------MGIELFETSAKENEN 156 (198)
T ss_pred HhcC--ccccceecccCCCCcccee------------------eehHHHHHHHHh----------cCchheehhhhhccc
Confidence 7652 4789999999999999888 888999999987 567889999999999
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q psy14891 337 VQTVFHAVMDLVIKINLQQ 355 (359)
Q Consensus 337 i~~vf~~v~~~Il~~~l~~ 355 (359)
++.+|..+...+++..|+.
T Consensus 157 vE~mF~cit~qvl~~k~r~ 175 (198)
T KOG0079|consen 157 VEAMFHCITKQVLQAKLRE 175 (198)
T ss_pred chHHHHHHHHHHHHHHHhh
Confidence 9999999999999876543
No 42
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.87 E-value=5.4e-21 Score=164.37 Aligned_cols=119 Identities=15% Similarity=0.153 Sum_probs=96.5
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+++||++|+++++..|..|+++++++++|||+++ .+++.+...|+..+.+. ...+.|+
T Consensus 40 ~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~-~~~~~~i 108 (161)
T cd04117 40 KTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISS----------ERSYQHIMKWVSDVDEY-APEGVQK 108 (161)
T ss_pred EEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCeE
Confidence 3445544 678999999999999999999999999999999999 78888888888877543 3357899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
++++||.|+.+++. ...+++..+.+. ..+.+++|||+++.||+++|..+.+.
T Consensus 109 ilvgnK~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 109 ILIGNKADEEQKRQ------------------VGDEQGNKLAKE----------YGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEECcccccccC------------------CCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999876543 456677777654 22557899999999999999988753
No 43
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.87 E-value=8.9e-21 Score=163.45 Aligned_cols=115 Identities=17% Similarity=0.242 Sum_probs=94.1
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|+++++..|..++++++++++|+|+++ .+++.+...|+..+... ...++|+++++||+|+
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl 118 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDM 118 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCCEEEEEECccc
Confidence 789999999999999999999999999999999998 77888887887776543 3357899999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
.+++. ...+++.++... ..+.+++|||+++.||.++|+.+.+.+.+
T Consensus 119 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 119 EDERV------------------VSSERGRQLADQ----------LGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred Ccccc------------------cCHHHHHHHHHH----------cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 76544 445666665543 23467899999999999999999887654
No 44
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.87 E-value=5.2e-21 Score=173.10 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=92.5
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+++++|||+|+++++.+|..||++++++|+|||+++ ..++.....|+..+... ..++|++|||||+|
T Consensus 61 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~----------~~s~~~i~~w~~~i~~~--~~~~piilvgNK~D 128 (219)
T PLN03071 61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128 (219)
T ss_pred EEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCC----------HHHHHHHHHHHHHHHHh--CCCCcEEEEEEchh
Confidence 4799999999999999999999999999999999998 77888777787777643 35799999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+....+ ..+.+ .+... +.+.+++|||+++.||.++|..+.+.+++.
T Consensus 129 l~~~~v-------------------~~~~~-~~~~~----------~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 129 VKNRQV-------------------KAKQV-TFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred hhhccC-------------------CHHHH-HHHHh----------cCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 854322 22333 44332 446678999999999999999999988753
No 45
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.87 E-value=4.5e-21 Score=166.69 Aligned_cols=129 Identities=20% Similarity=0.256 Sum_probs=100.0
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+.++++.+.+||++||+.++..|..||++++++|+|+|.++ ..++.+...++..++.....
T Consensus 44 ~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 113 (173)
T cd04154 44 PTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSD----------RLRLDDCKRELKELLQEERL 113 (173)
T ss_pred CccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChhh
Confidence 45555555566677899999999999999999999999999999999998 77888888889888876556
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.++|++|++||+|+.+.. ..+++.+++.. .....+.+.+++|||++++||.++|+
T Consensus 114 ~~~p~iiv~nK~Dl~~~~--------------------~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~g~gi~~l~~ 168 (173)
T cd04154 114 AGATLLILANKQDLPGAL--------------------SEEEIREALEL-----DKISSHHWRIQPCSAVTGEGLLQGID 168 (173)
T ss_pred cCCCEEEEEECcccccCC--------------------CHHHHHHHhCc-----cccCCCceEEEeccCCCCcCHHHHHH
Confidence 789999999999986421 22333333221 11112567889999999999999999
Q ss_pred HHHH
Q psy14891 343 AVMD 346 (359)
Q Consensus 343 ~v~~ 346 (359)
.+.+
T Consensus 169 ~l~~ 172 (173)
T cd04154 169 WLVD 172 (173)
T ss_pred HHhc
Confidence 8764
No 46
>KOG0093|consensus
Probab=99.86 E-value=1.8e-21 Score=158.91 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=117.1
Q ss_pred hhccCCCccCccccccccccccceeEEEEee----CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCcccccc
Q psy14891 164 RICDLKYVPNATDVLRARVRTNGIIETNFRL----GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLE 239 (359)
Q Consensus 164 ri~~~~y~Pt~~Dil~~r~~T~G~~~~~~~~----~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~e 239 (359)
|.+...|.|. ...|+|+....-++ +.+++++|||+|||++|.+...||+++.|+|+++|+++
T Consensus 40 ry~ddSFt~a-------fvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN------- 105 (193)
T KOG0093|consen 40 RYADDSFTSA-------FVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN------- 105 (193)
T ss_pred Hhhccccccc-------eeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC-------
Confidence 4555666663 36899976543332 34999999999999999999999999999999999998
Q ss_pred CCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccC
Q psy14891 240 DSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHN 319 (359)
Q Consensus 240 d~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~ 319 (359)
.++ ..+++-|-..+..-.-.++|+||++||||+..||. .+.+.+..++.+
T Consensus 106 ---eeS-f~svqdw~tqIktysw~naqvilvgnKCDmd~eRv------------------is~e~g~~l~~~-------- 155 (193)
T KOG0093|consen 106 ---EES-FNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERV------------------ISHERGRQLADQ-------- 155 (193)
T ss_pred ---HHH-HHHHHHHHHHheeeeccCceEEEEecccCCcccee------------------eeHHHHHHHHHH--------
Confidence 333 33444444444544557999999999999999998 788899999887
Q ss_pred CCCceEEEEeeccCCchHHHHHHHHHHHHHHhhhhhc
Q psy14891 320 SAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQV 356 (359)
Q Consensus 320 ~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l~~~ 356 (359)
..+-+++||||++.||+.+|..+.+.|-++.-.+.
T Consensus 156 --LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl 190 (193)
T KOG0093|consen 156 --LGFEFFETSAKENINVKQVFERLVDIICDKMSESL 190 (193)
T ss_pred --hChHHhhhcccccccHHHHHHHHHHHHHHHhhhhh
Confidence 45667899999999999999999999987655443
No 47
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.86 E-value=1.1e-20 Score=162.14 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=91.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+|+++++.+|..|+++++++|+|+|+++ ..++.+...|+..+.......+.|++|++||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl 118 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVN----------QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL 118 (163)
T ss_pred EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 568899999999999999999999999999999999 7888888888888876544568999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
..++. ...+++..+... ..+.+++|||+++.||.++|..+.+.
T Consensus 119 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 119 ESERE------------------VSSAEGRALAEE----------WGCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred hhcCc------------------cCHHHHHHHHHH----------hCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 65332 344455555432 23567899999999999999988764
No 48
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.86 E-value=2e-20 Score=161.06 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=95.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++++...|..++++++++|+|+|+++ .+++.+...|+..+.... ..+.|+++++||+|+
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl 119 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDL 119 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcC----------HHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhc
Confidence 678999999999999999999999999999999998 778888888877775432 357899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
...+. .+.+++..+... ..+.++++||++++||.++|..+.+.+.+
T Consensus 120 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 120 TDKRV------------------VDYSEAQEFADE----------LGIPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred ccccC------------------CCHHHHHHHHHH----------cCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 65443 456667776654 34567899999999999999999988753
No 49
>PTZ00369 Ras-like protein; Provisional
Probab=99.86 E-value=2e-20 Score=165.19 Aligned_cols=117 Identities=20% Similarity=0.204 Sum_probs=95.8
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+|++.++.+|..|+++++++|+|+|+++ ..++.+...|+..+.+.....++|++|++||+|+
T Consensus 53 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 122 (189)
T PTZ00369 53 CLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITS----------RSSFEEIASFREQILRVKDKDRVPMILVGNKCDL 122 (189)
T ss_pred EEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 678899999999999999999999999999999999 7778888888877766544458899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
..++. .+.+++.++... ..+.+++|||+++.||.++|..+.+.+.+.
T Consensus 123 ~~~~~------------------i~~~~~~~~~~~----------~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 123 DSERQ------------------VSTGEGQELAKS----------FGIPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred ccccc------------------cCHHHHHHHHHH----------hCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 65332 345556666543 235578999999999999999999888754
No 50
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.86 E-value=1e-20 Score=163.34 Aligned_cols=127 Identities=16% Similarity=0.279 Sum_probs=94.3
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+..+++++++||++|++.++.+|..||++++++|||+|.++ ..++.++..++..+....
T Consensus 30 pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~----------~~s~~~~~~~l~~~~~~~-- 97 (164)
T cd04162 30 PTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD----------SERLPLARQELHQLLQHP-- 97 (164)
T ss_pred ccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCC--
Confidence 45555444555667899999999999999999999999999999999998 677888888888887543
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccC------Cch
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATD------TSN 336 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d------~~n 336 (359)
.++|++|++||+|+..++. .++..+.+.- ..+ ...+.+++++|||++ +++
T Consensus 98 ~~~piilv~NK~Dl~~~~~--------------------~~~i~~~~~~--~~~--~~~~~~~~~~~Sa~~~~s~~~~~~ 153 (164)
T cd04162 98 PDLPLVVLANKQDLPAARS--------------------VQEIHKELEL--EPI--ARGRRWILQGTSLDDDGSPSRMEA 153 (164)
T ss_pred CCCcEEEEEeCcCCcCCCC--------------------HHHHHHHhCC--hhh--cCCCceEEEEeeecCCCChhHHHH
Confidence 6899999999999865432 1111111100 001 112567788899998 999
Q ss_pred HHHHHHHHH
Q psy14891 337 VQTVFHAVM 345 (359)
Q Consensus 337 i~~vf~~v~ 345 (359)
|+++|+.+.
T Consensus 154 v~~~~~~~~ 162 (164)
T cd04162 154 VKDLLSQLI 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998764
No 51
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.86 E-value=1.8e-20 Score=164.70 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=97.3
Q ss_pred cccceeE--EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 183 RTNGIIE--TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 183 ~T~G~~~--~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
||+|... ..+.+++ +.+++||++|+++++.+|..|+++++++++|+|+++ ..++.+...|+..+..
T Consensus 31 ~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~----------~~s~~~i~~~~~~~~~ 100 (182)
T cd04128 31 QTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTR----------KSTLNSIKEWYRQARG 100 (182)
T ss_pred CccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHH
Confidence 4455332 3455554 789999999999999999999999999999999999 7888888888887765
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
.. ....| +|++||+|+..+.- ... .. .-.+++.+|... ....+++|||+++.||+
T Consensus 101 ~~-~~~~p-ilVgnK~Dl~~~~~---~~~---------~~-~~~~~~~~~a~~----------~~~~~~e~SAk~g~~v~ 155 (182)
T cd04128 101 FN-KTAIP-ILVGTKYDLFADLP---PEE---------QE-EITKQARKYAKA----------MKAPLIFCSTSHSINVQ 155 (182)
T ss_pred hC-CCCCE-EEEEEchhcccccc---chh---------hh-hhHHHHHHHHHH----------cCCEEEEEeCCCCCCHH
Confidence 42 23566 67899999853210 000 00 112344445433 23557899999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy14891 339 TVFHAVMDLVIKIN 352 (359)
Q Consensus 339 ~vf~~v~~~Il~~~ 352 (359)
++|..+.+.++...
T Consensus 156 ~lf~~l~~~l~~~~ 169 (182)
T cd04128 156 KIFKIVLAKAFDLP 169 (182)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999888643
No 52
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.86 E-value=1.3e-20 Score=161.78 Aligned_cols=116 Identities=22% Similarity=0.202 Sum_probs=91.2
Q ss_pred EeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEE
Q psy14891 192 FRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFIL 269 (359)
Q Consensus 192 ~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL 269 (359)
+.+++ +.+++||++||+. ..|+++++++++|||+++ ..++.+...|+..+.......++|++|
T Consensus 40 i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~----------~~sf~~~~~~~~~i~~~~~~~~~piil 104 (158)
T cd04103 40 VLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLEN----------EASFQTVYNLYHQLSSYRNISEIPLIL 104 (158)
T ss_pred EEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 44444 6799999999975 357899999999999999 899999999999988765557899999
Q ss_pred EeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 270 FLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 270 ~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
++||.|+..... .+ .+.+++.++.++ .+.+.+++|||+++.||+++|..+.+.
T Consensus 105 vgnK~Dl~~~~~----~~------------v~~~~~~~~~~~---------~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 105 VGTQDAISESNP----RV------------IDDARARQLCAD---------MKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EeeHHHhhhcCC----cc------------cCHHHHHHHHHH---------hCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 999999853211 11 456667777654 134678899999999999999988754
No 53
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.86 E-value=2.1e-20 Score=168.55 Aligned_cols=119 Identities=17% Similarity=0.203 Sum_probs=95.9
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC--CCCCeEEEEeeC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY--FREASFILFLNK 273 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~--~~~~~iiL~~NK 273 (359)
.+.+++||++||+.++..|..|+++++++|+|+|+++ .+++.....|+..+..... ..++|++|++||
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~----------~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK 118 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTN----------SQSFENLEDWYSMVRKVLKSSETQPLVVLVGNK 118 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhccccCCCceEEEEEEC
Confidence 3789999999999999999999999999999999998 7778777777776654321 246789999999
Q ss_pred CCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 274 FDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 274 ~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
+|+.+++. ...+.+.++... ..+.++++||++++||.++|+.+...+....
T Consensus 119 ~DL~~~~~------------------v~~~~~~~~~~~----------~~~~~~~iSAktg~gv~~lf~~l~~~l~~~~ 169 (215)
T cd04109 119 TDLEHNRT------------------VKDDKHARFAQA----------NGMESCLVSAKTGDRVNLLFQQLAAELLGVD 169 (215)
T ss_pred cccccccc------------------cCHHHHHHHHHH----------cCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 99975443 455666666554 2356788999999999999999999988643
No 54
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.86 E-value=1.7e-20 Score=165.75 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=94.4
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc--CCCCCeEEEEeeCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR--YFREASFILFLNKF 274 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~--~~~~~~iiL~~NK~ 274 (359)
+.+++|||+|+++++..|..||++++++|+|||+++ .+++.....|+..+.+.. ...++|++|++||+
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~ 116 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITS----------RSTFERVERFREQIQRVKDESAADVPIMIVGNKC 116 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEECh
Confidence 578999999999999999999999999999999998 677777777777665432 23578999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
|+..++. ...+++.++... ..+.++++||+++.||.++|..+.+.+...+
T Consensus 117 Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~ 166 (190)
T cd04144 117 DKVYERE------------------VSTEEGAALARR----------LGCEFIEASAKTNVNVERAFYTLVRALRQQR 166 (190)
T ss_pred hccccCc------------------cCHHHHHHHHHH----------hCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 9865433 345555555443 3356789999999999999999999887654
No 55
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=2.8e-20 Score=167.35 Aligned_cols=117 Identities=16% Similarity=0.168 Sum_probs=98.6
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+||++++..|..|+++++++|+|||+++ .+++.+...|+..+.........|++|++||.|+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITN----------RESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 679999999999999999999999999999999998 7888888888888876544456889999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
...+. ...+++..+.+. ..+.+++|||++++||.++|+.+.+.+.+.
T Consensus 122 ~~~~~------------------v~~~~~~~~~~~----------~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 122 ESQRQ------------------VTREEAEKLAKD----------LGMKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred ccccc------------------cCHHHHHHHHHH----------hCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 76443 456666666544 337788999999999999999999988765
No 56
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.85 E-value=3.2e-20 Score=160.33 Aligned_cols=115 Identities=16% Similarity=0.194 Sum_probs=95.2
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++.+...|..++++++++|+|+|+++ ..++.+...|+..+... ...++|+++++||.|+
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl 120 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------EKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDM 120 (167)
T ss_pred EEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHhHHHHHHHHHHh-CCCCCcEEEEEECccc
Confidence 688999999999999999999999999999999998 67777777777777543 2357899999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
.+.+. ...+++.+++.. ..+.++++||+++.||.++|..+.+.+++
T Consensus 121 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 121 EEKRV------------------VSKEEGEALADE----------YGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred ccccC------------------CCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 76433 455666666654 33567999999999999999999998875
No 57
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.85 E-value=3.5e-20 Score=158.72 Aligned_cols=114 Identities=16% Similarity=0.241 Sum_probs=98.8
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++++...+..++++++++|+|||+++ .+++.....|+..+..... .++|++|+|||.|+
T Consensus 48 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~----------~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~ 116 (162)
T PF00071_consen 48 VNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTD----------EESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDL 116 (162)
T ss_dssp EEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTB----------HHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTG
T ss_pred cccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccc-ccccceeeeccccc
Confidence 789999999999999999999999999999999999 7888888877777755432 57999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
.+++. .+.+++.+++.+ .++.++++||+++.||.++|..+.+.|+
T Consensus 117 ~~~~~------------------v~~~~~~~~~~~----------~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 117 SDERE------------------VSVEEAQEFAKE----------LGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp GGGSS------------------SCHHHHHHHHHH----------TTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred ccccc------------------chhhHHHHHHHH----------hCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 87444 677888888876 3478899999999999999999999886
No 58
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.85 E-value=2.5e-20 Score=159.85 Aligned_cols=116 Identities=18% Similarity=0.274 Sum_probs=93.5
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC----CCCCeEEEEe
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY----FREASFILFL 271 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~----~~~~~iiL~~ 271 (359)
.+.+++|||+|++.++.+|..++++++++|+|+|+++ .+++.+...|+..+..... ..+.|+++++
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~ 117 (168)
T cd04119 48 EVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTD----------RQSFEALDSWLKEMKQEGGPHGNMENIVVVVCA 117 (168)
T ss_pred EEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhccccccCCCceEEEEE
Confidence 3789999999999999999999999999999999998 6777777677776654322 2578999999
Q ss_pred eCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 272 NKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 272 NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
||+|+..++. .+.+++..+..+ ..+.+++|||+++.||.++|+.+.+.++
T Consensus 118 nK~Dl~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 118 NKIDLTKHRA------------------VSEDEGRLWAES----------KGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred Echhcccccc------------------cCHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9999865333 455666666543 3356789999999999999999998876
No 59
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.85 E-value=3.6e-20 Score=164.98 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=96.1
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++.+|..|+++++++|+|+|+++ .+++.+...|+..+... ....|++|++||+|+
T Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~----------~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl 122 (199)
T cd04110 55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN----------GESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDD 122 (199)
T ss_pred EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEECccc
Confidence 678999999999999999999999999999999998 78888888888877553 357899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
...+. .+.+++..+... ..+.+++|||+++.||.++|+.+...++..
T Consensus 123 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 123 PERKV------------------VETEDAYKFAGQ----------MGISLFETSAKENINVEEMFNCITELVLRA 169 (199)
T ss_pred ccccc------------------cCHHHHHHHHHH----------cCCEEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence 65433 355666666554 236678999999999999999999998864
No 60
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.85 E-value=1.9e-20 Score=164.52 Aligned_cols=121 Identities=17% Similarity=0.234 Sum_probs=93.3
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.++.+.+|||+|+++++.+|..|+++++++|+|+|.++ .+++.++..++..+.......+.|++|++||+
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~ 119 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVD----------VERMEEAKTELHKITRFSENQGVPVLVLANKQ 119 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhhhhcCCCcEEEEEECc
Confidence 34789999999999999999999999999999999998 66778887788877765444578999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhcc-CCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNH-NSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~-~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
|+... . +.++...++. ++. ...+.+++++|||++++||+++|+.+.+.++.
T Consensus 120 D~~~~-~-------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 120 DLPNA-L-------------------SVSEVEKLLA-----LHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred Ccccc-C-------------------CHHHHHHHhC-----ccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence 98642 1 2222222221 111 11234678899999999999999999998864
No 61
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.85 E-value=2.9e-20 Score=158.51 Aligned_cols=113 Identities=17% Similarity=0.184 Sum_probs=90.9
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|+++++.+|..|+++++++++|+|+++ ..++.+...|+..+.......+.|++|++||+|+
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~----------~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl 118 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINS----------RKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL 118 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 568899999999999999999999999999999998 6777777778877776544468899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
.... ...+++..+... ..+.+++|||+++.||+++|+.+.+.+
T Consensus 119 ~~~~-------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 119 AART-------------------VSSRQGQDLAKS----------YGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ccce-------------------ecHHHHHHHHHH----------hCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 6522 234555555443 235678999999999999999987654
No 62
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.85 E-value=3.8e-20 Score=160.36 Aligned_cols=114 Identities=21% Similarity=0.245 Sum_probs=93.6
Q ss_pred ceeeEEecCCccccc-cchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQR-RKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r-~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++||++|+++++ ..|.+|+++++++|+|+|+++ ..++.....|+..+.......++|++|++||+|
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 120 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTN----------MASFHSLPSWIEECEQHSLPNEVPRILVGNKCD 120 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 789999999999997 589999999999999999998 777888778777776654456899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccC---CchHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATD---TSNVQTVFHAVMDLV 348 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d---~~ni~~vf~~v~~~I 348 (359)
+...+. ...+.+.++... ..+.+++|||++ +.||+++|..+...+
T Consensus 121 l~~~~~------------------~~~~~~~~~~~~----------~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 121 LREQIQ------------------VPTDLAQRFADA----------HSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred chhhcC------------------CCHHHHHHHHHH----------cCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 876543 455666666654 336678999999 999999999988754
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.85 E-value=2.8e-20 Score=162.22 Aligned_cols=124 Identities=16% Similarity=0.188 Sum_probs=92.8
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHH-HHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLN-LFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~-~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++|||+||+.++..|..|+++++++|+|||+++ .+++.+... |+..+... ..++|++|++||+|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~D 116 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTKLD 116 (174)
T ss_pred EEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChh
Confidence 678999999999999999999999999999999998 778888764 54544332 35799999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+...+. ...++... .... .+.+++.++.++ .+.+.+++|||++++||+++|+.+.+.
T Consensus 117 l~~~~~--~~~~~~~~---~~~~-v~~~~~~~~~~~---------~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 117 LRDDKD--TIEKLKEK---KLTP-ITYPQGLAMAKE---------IGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hccChh--hHHHHhhc---cCCC-CCHHHHHHHHHH---------cCCcEEEEecccccCCHHHHHHHHHHh
Confidence 865332 11111110 0011 567888888775 123567899999999999999988753
No 64
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.85 E-value=3.7e-20 Score=167.48 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=98.4
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+|||+||+.++.+|..+|++++++|+|||+++ ..++.....+|...+.. ...++|++|||||+|+
T Consensus 49 v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~----------~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL 117 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR----------PETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDM 117 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-hCCCCCEEEEEECccc
Confidence 789999999999999999999999999999999999 78888887766655543 3468999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCch-HHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSN-VQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~n-i~~vf~~v~~~Il~~ 351 (359)
....- ....+.. ...-+ .+.+++..+.++ ...+.+++|||++++| |+++|..+....+.+
T Consensus 118 ~~~~~--~~~~~~~---~~~~p-Is~e~g~~~ak~---------~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 118 RTDLA--TLRELSK---QRLIP-VTHEQGTVLAKQ---------VGAVSYVECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred ccchh--hhhhhhh---ccCCc-cCHHHHHHHHHH---------cCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 64311 0001100 00112 677888888766 1235788999999986 999999999988764
No 65
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=3.6e-20 Score=163.63 Aligned_cols=129 Identities=12% Similarity=0.198 Sum_probs=95.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++||++||+.++.+|..||++++++|+|||+++ .+++.... .|+..+... ..+.|++|++||+|
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~----------~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~D 115 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDS----------PDSLENVESKWLGEIREH--CPGVKLVLVALKCD 115 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChh
Confidence 689999999999999999999999999999999999 77777665 356565432 35799999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
+..++. ....+ ..........+++.+++.+ .+.+.+++|||+++.||+++|..+.+.++...
T Consensus 116 l~~~~~--~~~~~----~~~~~~~v~~~~~~~~~~~---------~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 116 LREARN--ERDDL----QRYGKHTISYEEGLAVAKR---------INALRYLECSAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred hccChh--hHHHH----hhccCCCCCHHHHHHHHHH---------cCCCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence 976432 10000 0011111455666666543 13367889999999999999999999988644
No 66
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.85 E-value=3.5e-20 Score=160.23 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=91.6
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+.+|||+||+.+...|..+|.+++++|+|+|+++ .+++.....|+..+.... .++|+++++||+|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~D 115 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS----------RVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVD 115 (166)
T ss_pred EEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC--CCCcEEEEEEchh
Confidence 4789999999999999999999999999999999998 778877777777776543 3899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
+.+..+ . ..+.++... +.+.+++|||++++||+++|+.+.+.+++
T Consensus 116 l~~~~~-------------------~-~~~~~~~~~----------~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 116 IKDRKV-------------------K-AKQITFHRK----------KNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred cccccC-------------------C-HHHHHHHHH----------cCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 863222 1 123333322 45678899999999999999999999876
No 67
>KOG0091|consensus
Probab=99.85 E-value=5e-21 Score=158.92 Aligned_cols=133 Identities=16% Similarity=0.144 Sum_probs=113.8
Q ss_pred ccccceeE--EEEeeC---CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHH
Q psy14891 182 VRTNGIIE--TNFRLG---ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQV 256 (359)
Q Consensus 182 ~~T~G~~~--~~~~~~---~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i 256 (359)
-||+|+.. .-++++ .+++++|||+||++||++..+||+++-+++.|+|+++ ..+++....|.++.
T Consensus 38 dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditn----------r~sfehv~~w~~ea 107 (213)
T KOG0091|consen 38 DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITN----------RESFEHVENWVKEA 107 (213)
T ss_pred CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccc----------hhhHHHHHHHHHHH
Confidence 38999643 233343 3899999999999999999999999999999999999 88888888888877
Q ss_pred HhccC-CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc
Q psy14891 257 VNNRY-FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS 335 (359)
Q Consensus 257 ~~~~~-~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ 335 (359)
.-+-. ..++.+.|||.|+||-..|. ++.++|.+|.+. ..+.+.+|||+++.
T Consensus 108 ~m~~q~P~k~VFlLVGhKsDL~SqRq------------------Vt~EEaEklAa~----------hgM~FVETSak~g~ 159 (213)
T KOG0091|consen 108 AMATQGPDKVVFLLVGHKSDLQSQRQ------------------VTAEEAEKLAAS----------HGMAFVETSAKNGC 159 (213)
T ss_pred HHhcCCCCeeEEEEeccccchhhhcc------------------ccHHHHHHHHHh----------cCceEEEecccCCC
Confidence 54433 45677899999999988877 899999999887 77888999999999
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy14891 336 NVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 336 ni~~vf~~v~~~Il~~~ 352 (359)
||++.|+.+++.|....
T Consensus 160 NVeEAF~mlaqeIf~~i 176 (213)
T KOG0091|consen 160 NVEEAFDMLAQEIFQAI 176 (213)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999998754
No 68
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.85 E-value=3.7e-20 Score=158.89 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=94.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+|+++++..|..++++++++++|+|+++ ..++.+...|+..+.+.....++|+++++||+|+
T Consensus 48 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl 117 (164)
T smart00173 48 CLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITD----------RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDL 117 (164)
T ss_pred EEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 678899999999999999999999999999999998 7778888888877766544457899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
..++. ...+.+.+++.. ..+.++++||+++.||+++|+.+.+.+.
T Consensus 118 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 118 ESERV------------------VSTEEGKELARQ----------WGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred cccce------------------EcHHHHHHHHHH----------cCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 65433 345556666544 2356789999999999999999987654
No 69
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.85 E-value=5.5e-20 Score=158.97 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=90.2
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc---CCCCCeEEEEeeC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR---YFREASFILFLNK 273 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~---~~~~~~iiL~~NK 273 (359)
+.+++||++||++++.+|..||++++++|+|+|+++ ..++.....|...+.... ...++|++|++||
T Consensus 54 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 123 (170)
T cd04116 54 VTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDD----------SQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNK 123 (170)
T ss_pred EEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 788999999999999999999999999999999998 666776666666665432 2357899999999
Q ss_pred CCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 274 FDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 274 ~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+|+.. +. ...+++.+++.+ .....+++|||+++.||.++|..+.+.
T Consensus 124 ~Dl~~-~~------------------~~~~~~~~~~~~---------~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 124 NDIPE-RQ------------------VSTEEAQAWCRE---------NGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ccccc-cc------------------cCHHHHHHHHHH---------CCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 99863 33 356667777654 123467899999999999999988764
No 70
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.84 E-value=3.9e-20 Score=158.22 Aligned_cols=128 Identities=17% Similarity=0.227 Sum_probs=94.5
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+|+....+...++++++|||+|+++++..|..|+.+++++|+|+|+++ ..++.....++..+++.....
T Consensus 30 t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 99 (158)
T cd04151 30 TIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTD----------RDRLGTAKEELHAMLEEEELK 99 (158)
T ss_pred ccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhhc
Confidence 4444444555677899999999999999999999999999999999998 566777777777777665566
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
+.|++|++||+|+.+.. ..++....+. ..........++++||+++.||+++|+.
T Consensus 100 ~~piiiv~nK~Dl~~~~--------------------~~~~i~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 100 GAVLLVFANKQDMPGAL--------------------SEAEISEKLG-----LSELKDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred CCcEEEEEeCCCCCCCC--------------------CHHHHHHHhC-----ccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence 89999999999985421 1122111111 1111123456889999999999999998
Q ss_pred HHH
Q psy14891 344 VMD 346 (359)
Q Consensus 344 v~~ 346 (359)
+.+
T Consensus 155 l~~ 157 (158)
T cd04151 155 LVN 157 (158)
T ss_pred Hhc
Confidence 865
No 71
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.84 E-value=3.3e-20 Score=159.67 Aligned_cols=131 Identities=21% Similarity=0.325 Sum_probs=102.6
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|.....+.+++..+.+|||+|++.++.+|..+|++++++|||+|.++ ..++.+...++..+......
T Consensus 36 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~----------~~~~~~~~~~~~~~~~~~~~ 105 (167)
T cd04160 36 PTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTD----------RERFEESKSALEKVLRNEAL 105 (167)
T ss_pred CccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECch----------HHHHHHHHHHHHHHHhChhh
Confidence 56676666777788999999999999999999999999999999999998 56788888899998877666
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.++|++|++||+|+... . ..++..+++....... ....+.++.+||++++||+++|+
T Consensus 106 ~~~p~ilv~NK~D~~~~-~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~e~~~ 162 (167)
T cd04160 106 EGVPLLILANKQDLPDA-L-------------------SVEEIKEVFQDKAEEI---GRRDCLVLPVSALEGTGVREGIE 162 (167)
T ss_pred cCCCEEEEEEccccccC-C-------------------CHHHHHHHhccccccc---cCCceEEEEeeCCCCcCHHHHHH
Confidence 78999999999998542 2 2333444433321111 12457788999999999999998
Q ss_pred HHHH
Q psy14891 343 AVMD 346 (359)
Q Consensus 343 ~v~~ 346 (359)
.+.+
T Consensus 163 ~l~~ 166 (167)
T cd04160 163 WLVE 166 (167)
T ss_pred HHhc
Confidence 8764
No 72
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.84 E-value=3.5e-20 Score=161.43 Aligned_cols=129 Identities=17% Similarity=0.159 Sum_probs=97.9
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|.....+.++++.+.+||++|+++++..|..||++++++|||+|.++ .+++.++..++..++++...
T Consensus 45 ~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~----------~~~~~~~~~~l~~~~~~~~~ 114 (174)
T cd04153 45 PTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD----------RERLPLTKEELYKMLAHEDL 114 (174)
T ss_pred CccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhh
Confidence 34454445566677899999999999999999999999999999999998 67888888889998877666
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.++|+++++||+|+.. .. +.++..+.+. ......+.+.++++||++++||+++|+
T Consensus 115 ~~~p~viv~NK~Dl~~-~~-------------------~~~~i~~~l~-----~~~~~~~~~~~~~~SA~~g~gi~e~~~ 169 (174)
T cd04153 115 RKAVLLVLANKQDLKG-AM-------------------TPAEISESLG-----LTSIRDHTWHIQGCCALTGEGLPEGLD 169 (174)
T ss_pred cCCCEEEEEECCCCCC-CC-------------------CHHHHHHHhC-----cccccCCceEEEecccCCCCCHHHHHH
Confidence 7899999999999854 11 2222222111 000112456788999999999999999
Q ss_pred HHHH
Q psy14891 343 AVMD 346 (359)
Q Consensus 343 ~v~~ 346 (359)
.+..
T Consensus 170 ~l~~ 173 (174)
T cd04153 170 WIAS 173 (174)
T ss_pred HHhc
Confidence 8753
No 73
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.84 E-value=3.9e-20 Score=163.04 Aligned_cols=134 Identities=16% Similarity=0.252 Sum_probs=100.3
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+|.....+.+++.++.+||++|++.++..|..|+++++++|+|+|+++ .+++.+...++..++......
T Consensus 50 T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~----------~~s~~~~~~~~~~i~~~~~~~ 119 (190)
T cd00879 50 TLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAAD----------PERFQESKEELDSLLSDEELA 119 (190)
T ss_pred ccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHcCcccc
Confidence 3344445566678899999999999999999999999999999999998 678888889999998766667
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHh------hhccCCCCceEEEEeeccCCchH
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFA------LRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~------~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
+.|+++++||+|+.. . .+.++..+++...-. .......+.+.++.|||++++||
T Consensus 120 ~~pvivv~NK~Dl~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 179 (190)
T cd00879 120 NVPFLILGNKIDLPG-A-------------------VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGY 179 (190)
T ss_pred CCCEEEEEeCCCCCC-C-------------------cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCCh
Confidence 899999999999853 2 233444444332100 00011124567889999999999
Q ss_pred HHHHHHHHHH
Q psy14891 338 QTVFHAVMDL 347 (359)
Q Consensus 338 ~~vf~~v~~~ 347 (359)
.++|+.+...
T Consensus 180 ~e~~~~l~~~ 189 (190)
T cd00879 180 GEAFRWLSQY 189 (190)
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 74
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=9.5e-20 Score=161.14 Aligned_cols=118 Identities=18% Similarity=0.196 Sum_probs=95.6
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.++||||+||++++..|..++++++++|+|+|+++ .+++.+...|+..+... ...+.|+++++||.|+
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl 118 (191)
T cd04112 50 VKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITN----------KASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADM 118 (191)
T ss_pred EEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccc
Confidence 688999999999999999999999999999999998 67777777777776543 2347899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhhh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINL 353 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l 353 (359)
..++. ...+++..+... ..+.++++||+++.||.++|..+.+.+.....
T Consensus 119 ~~~~~------------------~~~~~~~~l~~~----------~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~ 167 (191)
T cd04112 119 SGERV------------------VKREDGERLAKE----------YGVPFMETSAKTGLNVELAFTAVAKELKHRKY 167 (191)
T ss_pred hhccc------------------cCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 75443 344555555443 23567899999999999999999999987643
No 75
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.84 E-value=6.4e-20 Score=157.14 Aligned_cols=114 Identities=21% Similarity=0.261 Sum_probs=93.3
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+|++.++..|..|+++++++++|+|+++ ..++.+...|+..+.+.....+.|++|++||+|+
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl 119 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTD----------RGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL 119 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccc
Confidence 678899999999999999999999999999999998 7778888888888876544457899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
..++. ...+.+.++.+. ..+.++++||+++.||+++|+.+.+.+
T Consensus 120 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 120 EHQRK------------------VSREEGQELARK----------LKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cccce------------------ecHHHHHHHHHH----------cCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 65433 345556666553 235678999999999999999887653
No 76
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.84 E-value=8e-20 Score=156.21 Aligned_cols=129 Identities=18% Similarity=0.219 Sum_probs=96.0
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+..+++++++|||+|+++++.+|..||++++++|||+|.++ ..++..+..++..+.+.+.+
T Consensus 31 ~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~~~~~~~~~~~~~~~~~~~ 100 (162)
T cd04157 31 PTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD----------RLRLVVVKDELELLLNHPDI 100 (162)
T ss_pred CccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc----------HHHHHHHHHHHHHHHcCccc
Confidence 45565555566678899999999999999999999999999999999998 67788888888888776543
Q ss_pred --CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHH
Q psy14891 263 --REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 263 --~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~v 340 (359)
.++|++|++||+|+..+.. .++....+. +.....+.+.+++|||+++.||+++
T Consensus 101 ~~~~~p~iiv~NK~Dl~~~~~--------------------~~~~~~~l~-----~~~~~~~~~~~~~~Sa~~g~gv~~~ 155 (162)
T cd04157 101 KHRRVPILFFANKMDLPDALT--------------------AVKITQLLG-----LENIKDKPWHIFASNALTGEGLDEG 155 (162)
T ss_pred ccCCCCEEEEEeCccccCCCC--------------------HHHHHHHhC-----CccccCceEEEEEeeCCCCCchHHH
Confidence 4799999999999864211 111111111 0000123456788999999999999
Q ss_pred HHHHHH
Q psy14891 341 FHAVMD 346 (359)
Q Consensus 341 f~~v~~ 346 (359)
|+.+.+
T Consensus 156 ~~~l~~ 161 (162)
T cd04157 156 VQWLQA 161 (162)
T ss_pred HHHHhc
Confidence 998754
No 77
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=5.7e-20 Score=163.30 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=88.3
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHH-HHHHHHhccCCCCCeEEEEeeCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLN-LFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~-~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.+++++|||+||+. .....||++++++|+|||+++ ..++.+... |...+... ..++|++|++||+
T Consensus 65 ~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~----------~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~ 130 (195)
T cd01873 65 SVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIAS----------PNSLRNVKTMWYPEIRHF--CPRVPVILVGCKL 130 (195)
T ss_pred EEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCC----------hhHHHHHHHHHHHHHHHh--CCCCCEEEEEEch
Confidence 37899999999975 345678999999999999999 778877764 55555332 2578999999999
Q ss_pred Ccchhhhhh---cCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 275 DLFREKILY---SGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 275 Dl~~~k~~~---~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
||....... ...++..-. -.....+.+++.+++++ ..+.+++|||++++||+++|..+.+
T Consensus 131 DL~~~~~~~~~~~~~~~~~~~--~~~~~V~~~e~~~~a~~----------~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 131 DLRYADLDEVNRARRPLARPI--KNADILPPETGRAVAKE----------LGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred hccccccchhhhccccccccc--ccCCccCHHHHHHHHHH----------hCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 985421100 000110000 00112678889888876 3467889999999999999998875
No 78
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.84 E-value=1.5e-19 Score=157.04 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=91.8
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+|++++..+|..+|++++++|+|+|+++ ..++.....|+..+.......+.|+++|+||.|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 49 FSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTD----------VASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 679999999999999999999999999999999998 6777777788888766544456889999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
..+.- .+ ...+.+.++..+ ....++++||+++.||.++|..+...+..
T Consensus 119 ~~~~~----~~------------~~~~~~~~~~~~----------~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 119 SSPAQ----YA------------LMEQDAIKLAAE----------MQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred Ccccc----cc------------ccHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 53211 00 123445555433 22456789999999999999999887753
No 79
>KOG0074|consensus
Probab=99.84 E-value=9.7e-21 Score=153.64 Aligned_cols=88 Identities=25% Similarity=0.476 Sum_probs=80.7
Q ss_pred ccccceeEEEEeeCC-ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc
Q psy14891 182 VRTNGIIETNFRLGE-SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR 260 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~-~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~ 260 (359)
.||.||+...+...+ ..+++||+|||+..|..|..||.+++++|||+|.+| ..+++|.-+.+-++....
T Consensus 46 tpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D----------~krfeE~~~el~ELleee 115 (185)
T KOG0074|consen 46 TPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTD----------EKRFEEISEELVELLEEE 115 (185)
T ss_pred cccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCc----------hHhHHHHHHHHHHHhhhh
Confidence 489999999999877 999999999999999999999999999999999888 788898888888888888
Q ss_pred CCCCCeEEEEeeCCCcchh
Q psy14891 261 YFREASFILFLNKFDLFRE 279 (359)
Q Consensus 261 ~~~~~~iiL~~NK~Dl~~~ 279 (359)
..+.+|+++|.||+|+..+
T Consensus 116 Kl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 116 KLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred hhhccceeehhhhhHHHhh
Confidence 8899999999999998753
No 80
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.84 E-value=5.7e-20 Score=159.07 Aligned_cols=131 Identities=15% Similarity=0.253 Sum_probs=100.1
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+..+++++++||++|++.++.+|.+||++++++|||+|.++ ..++.++..++..+.+.+..
T Consensus 29 ~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~----------~~s~~~~~~~l~~l~~~~~~ 98 (167)
T cd04161 29 PTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD----------DDRVQEVKEILRELLQHPRV 98 (167)
T ss_pred CcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCc----------hhHHHHHHHHHHHHHcCccc
Confidence 56676666777788999999999999999999999999999999999998 67899999999999877666
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCC------ch
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDT------SN 336 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~------~n 336 (359)
.++|++||+||+|+...+- .++..+...- ..+.......+++..|||+++ ++
T Consensus 99 ~~~piliv~NK~Dl~~~~~--------------------~~~i~~~~~l--~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g 156 (167)
T cd04161 99 SGKPILVLANKQDKKNALL--------------------GADVIEYLSL--EKLVNENKSLCHIEPCSAIEGLGKKIDPS 156 (167)
T ss_pred cCCcEEEEEeCCCCcCCCC--------------------HHHHHHhcCc--ccccCCCCceEEEEEeEceeCCCCccccC
Confidence 7899999999999865331 1111111100 001111124577788999998 89
Q ss_pred HHHHHHHHH
Q psy14891 337 VQTVFHAVM 345 (359)
Q Consensus 337 i~~vf~~v~ 345 (359)
+.+.|+-+.
T Consensus 157 ~~~~~~wl~ 165 (167)
T cd04161 157 IVEGLRWLL 165 (167)
T ss_pred HHHHHHHHh
Confidence 999998654
No 81
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.83 E-value=2.3e-19 Score=155.21 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=95.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|+++++..+..++++++++|||+|+++ .+++.+...|+..+.... ..++|++|++||.|+
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl 121 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDL 121 (168)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCcEEEEEECccc
Confidence 678999999999999999999999999999999998 788888888888776543 357999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
..++. .+.+++..++.. ..+.++++||++++||.++|..+.+.+++
T Consensus 122 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 122 ESRRE------------------VSYEEGEAFAKE----------HGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred ccccC------------------CCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 75433 456667777654 34667899999999999999999887764
No 82
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.83 E-value=2.3e-19 Score=154.14 Aligned_cols=113 Identities=18% Similarity=0.259 Sum_probs=87.8
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+++|||+|+++++..|..|+++++++|+|+|+++ ..++.+...|+..+.+. ..+.|+++++||+|
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~D 115 (161)
T cd04124 48 TILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTR----------KITYKNLSKWYEELREY--RPEIPCIVVANKID 115 (161)
T ss_pred EEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCcEEEEEECcc
Confidence 4688999999999999999999999999999999998 56666666676666442 34789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+... . .+++.++... ..+.++++||+++.||.++|+.+.+.+++.
T Consensus 116 l~~~-~--------------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 116 LDPS-V--------------------TQKKFNFAEK----------HNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred Cchh-H--------------------HHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 8421 1 1223333322 235677899999999999999999888753
No 83
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.83 E-value=1.4e-19 Score=166.41 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=94.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC--------CCCCeEE
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY--------FREASFI 268 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~--------~~~~~ii 268 (359)
+.++||||+|++.++.+|..++.+++++|+|||+++ ..++.+...|++.+....+ ..++|++
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~----------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piI 117 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDN----------RESFEEVCRLREQILETKSCLKNKTKENVKIPMV 117 (247)
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhhcccccccccCCCCcEE
Confidence 678999999999999999999999999999999998 7888888888888876432 3578999
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
|++||+|+..++. ...+++.+++.. ...+.+++|||+++.||+++|..+....
T Consensus 118 ivgNK~Dl~~~~~------------------v~~~ei~~~~~~---------~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 118 ICGNKADRDFPRE------------------VQRDEVEQLVGG---------DENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEECccchhccc------------------cCHHHHHHHHHh---------cCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999875333 455666666543 1346688999999999999999998754
No 84
>KOG0095|consensus
Probab=99.83 E-value=4e-20 Score=151.34 Aligned_cols=143 Identities=24% Similarity=0.240 Sum_probs=110.0
Q ss_pred hhhccCCCccCccccccccccccceeE--EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccc
Q psy14891 163 ERICDLKYVPNATDVLRARVRTNGIIE--TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLL 238 (359)
Q Consensus 163 ~ri~~~~y~Pt~~Dil~~r~~T~G~~~--~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ 238 (359)
.|+.+.-|.|-+ ..|+|+.. .++.+++ ++++||||+||++||++..+||+.++++|+|+|+|.
T Consensus 25 rrftqglfppgq-------gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydisc------ 91 (213)
T KOG0095|consen 25 RRFTQGLFPPGQ-------GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC------ 91 (213)
T ss_pred hhhhccCCCCCC-------CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc------
Confidence 456777788876 47999654 4555554 999999999999999999999999999999999998
Q ss_pred cCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhcc
Q psy14891 239 EDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNH 318 (359)
Q Consensus 239 ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~ 318 (359)
.++...+.+++..+++..++ ++--||||||.|+.+++- ....-+.+|-..
T Consensus 92 -qpsfdclpewlreie~yan~----kvlkilvgnk~d~~drre------------------vp~qigeefs~~------- 141 (213)
T KOG0095|consen 92 -QPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADRRE------------------VPQQIGEEFSEA------- 141 (213)
T ss_pred -CcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhhhh------------------hhHHHHHHHHHh-------
Confidence 33444555555555555554 456699999999987654 333445555554
Q ss_pred CCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 319 NSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 319 ~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
..+|+.+|||++.+||+.+|..++..++..
T Consensus 142 ---qdmyfletsakea~nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 142 ---QDMYFLETSAKEADNVEKLFLDLACRLISE 171 (213)
T ss_pred ---hhhhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence 337889999999999999999999888764
No 85
>PLN03108 Rab family protein; Provisional
Probab=99.83 E-value=2.5e-19 Score=161.02 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=96.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+.... ..+.|+++++||+|+
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~----------~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl 123 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLASWLEDARQHA-NANMTIMLIGNKCDL 123 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccC
Confidence 678999999999999999999999999999999998 677777777777765432 357899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
..++. ...+++.+++.. ..+.++++||+++.||.++|..+.+.++++
T Consensus 124 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 124 AHRRA------------------VSTEEGEQFAKE----------HGLIFMEASAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred ccccC------------------CCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 76544 466777777654 346788999999999999999999998864
No 86
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=2.8e-19 Score=157.50 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=95.4
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++.++..|..++++++++|+|||+++ ..++.+...|+..+.... ..+.|++|++||.|+
T Consensus 49 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl 117 (188)
T cd04125 49 IKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTD----------QESFENLKFWINEINRYA-RENVIKVIVANKSDL 117 (188)
T ss_pred EEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCC
Confidence 788999999999999999999999999999999998 677777777777765432 345899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
.+.+. .+.+.+..+... ..+.++++||+++.||.++|..+.+.++++
T Consensus 118 ~~~~~------------------v~~~~~~~~~~~----------~~~~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 118 VNNKV------------------VDSNIAKSFCDS----------LNIPFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred ccccc------------------CCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 76544 456666666543 345678999999999999999999998754
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.83 E-value=2.6e-19 Score=154.70 Aligned_cols=116 Identities=21% Similarity=0.227 Sum_probs=93.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+|+++++.+|..++++++++|+|+|+++ .+.+.....|+..+.......++|+++++||.|+
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~----------~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~ 118 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTS----------EASLNELGELREQVLRIKDSDNVPMVLVGNKADL 118 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhc
Confidence 688999999999999999999999999999999998 6777777777777765444458999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
...+. ...+++.++.+. + +.+.+++|||+.+.||.++|+.+...++
T Consensus 119 ~~~~~------------------~~~~~~~~~~~~-~--------~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 119 EDDRQ------------------VSREDGVSLSQQ-W--------GNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred cccCc------------------cCHHHHHHHHHH-c--------CCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 76443 345555555432 1 2356789999999999999999988765
No 88
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.83 E-value=2.7e-19 Score=153.77 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=92.4
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|+++++..|..++++++++|+|+|+++ .+++.+...|+..+... ...+.|++|++||+|+
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------KQTFENVERWLKELRDH-ADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccc
Confidence 678999999999999999999999999999999998 77777777777776554 2346899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
...+. ...++..++... ..+.++++||+++.||+.+|+.+...|
T Consensus 121 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 121 RHLRA------------------VPTEEAKAFAEK----------NGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ccccc------------------CCHHHHHHHHHH----------cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 65443 455666666543 346678999999999999999987764
No 89
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.83 E-value=2.1e-19 Score=153.77 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=93.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...++|++|++||.|+
T Consensus 49 ~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~ 117 (161)
T cd04113 49 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITN----------RTSFEALPTWLSDARAL-ASPNIVVILVGNKSDL 117 (161)
T ss_pred EEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhc
Confidence 678999999999999999999999999999999998 66777777777766432 2357899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
..++. .+.+++..+.+. ..+.++++||+++.||.++|+.+.+.+
T Consensus 118 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 118 ADQRE------------------VTFLEASRFAQE----------NGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred chhcc------------------CCHHHHHHHHHH----------cCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 76433 566777777765 336789999999999999999988753
No 90
>PLN03110 Rab GTPase; Provisional
Probab=99.83 E-value=2.7e-19 Score=161.51 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=100.1
Q ss_pred ccccee--EEEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 183 RTNGII--ETNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 183 ~T~G~~--~~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
+|+|+. ...+.+++ +.+++||++||++++..|..++++++++|+|+|+++ ..++.....|+..+..
T Consensus 43 ~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~ 112 (216)
T PLN03110 43 STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------RQTFDNVQRWLRELRD 112 (216)
T ss_pred CceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCC----------hHHHHHHHHHHHHHHH
Confidence 445533 23444444 789999999999999999999999999999999998 6777766677776644
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
. ...++|+++++||+|+...+. ...+.+..+... ..+.+++|||+++.||.
T Consensus 113 ~-~~~~~piiiv~nK~Dl~~~~~------------------~~~~~~~~l~~~----------~~~~~~e~SA~~g~~v~ 163 (216)
T PLN03110 113 H-ADSNIVIMMAGNKSDLNHLRS------------------VAEEDGQALAEK----------EGLSFLETSALEATNVE 163 (216)
T ss_pred h-CCCCCeEEEEEEChhcccccC------------------CCHHHHHHHHHH----------cCCEEEEEeCCCCCCHH
Confidence 3 335799999999999865433 345555555433 34778999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14891 339 TVFHAVMDLVIKI 351 (359)
Q Consensus 339 ~vf~~v~~~Il~~ 351 (359)
++|+.+...|.+.
T Consensus 164 ~lf~~l~~~i~~~ 176 (216)
T PLN03110 164 KAFQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
No 91
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=2.7e-19 Score=154.04 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=93.4
Q ss_pred EEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEE
Q psy14891 191 NFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFI 268 (359)
Q Consensus 191 ~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ii 268 (359)
.+.+++ +.+++||++|++.++..|..++++++++++|+|+++ ..++.+...|+..+.... ..++|++
T Consensus 44 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~p~i 112 (165)
T cd01864 44 TLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITR----------RSSFESVPHWIEEVEKYG-ASNVVLL 112 (165)
T ss_pred EEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHhHHHHHHHHHHhC-CCCCcEE
Confidence 344444 678999999999999999999999999999999998 677777777777775432 3578999
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+|+||+|+.+.+. ...+++..+.+. .+...++++||+++.||.++|..+.+.
T Consensus 113 vv~nK~Dl~~~~~------------------~~~~~~~~~~~~---------~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 113 LIGNKCDLEEQRE------------------VLFEEACTLAEK---------NGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEECcccccccc------------------cCHHHHHHHHHH---------cCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999875433 455566665553 133467899999999999999988754
No 92
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.83 E-value=2.7e-19 Score=157.25 Aligned_cols=121 Identities=20% Similarity=0.193 Sum_probs=94.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHH-HHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLN-LFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~-~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++|||+||+.++..|..++++++++|+|+|+++ .+++.+... |+..+... ..++|++|++||.|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D 116 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDN----------PTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTD 116 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChh
Confidence 678999999999999999999999999999999998 777877765 44444322 35789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCchHHHHHHHHHHHHHHhhh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSNVQTVFHAVMDLVIKINL 353 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni~~vf~~v~~~Il~~~l 353 (359)
+..++- .... ...+++.+++.. ..+ .+++|||+++.||.++|..+.+.++....
T Consensus 117 l~~~~~--~~~~------------v~~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 171 (187)
T cd04132 117 LRKDKN--LDRK------------VTPAQAESVAKK----------QGAFAYLECSAKTMENVEEVFDTAIEEALKKEG 171 (187)
T ss_pred hhhCcc--ccCC------------cCHHHHHHHHHH----------cCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhh
Confidence 865432 1101 456667777655 223 57899999999999999999999987543
No 93
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.83 E-value=1.9e-19 Score=155.15 Aligned_cols=113 Identities=17% Similarity=0.200 Sum_probs=88.4
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc--CCCCCeEEEEeeC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR--YFREASFILFLNK 273 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~--~~~~~~iiL~~NK 273 (359)
.+.+++|||+|+++++.+|..++++++++|+|+|+++ ..++.+...|++.+.... ...++|++|++||
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 117 (165)
T cd04140 48 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTS----------KQSLEELKPIYELICEIKGNNIEKIPIMLVGNK 117 (165)
T ss_pred EEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEC
Confidence 3689999999999999999999999999999999998 677777777766554322 2357899999999
Q ss_pred CCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 274 FDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 274 ~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
+|+...+. ...+++..+... ..+.++++||++++||+++|+.+.+
T Consensus 118 ~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 118 CDESHKRE------------------VSSNEGAACATE----------WNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred ccccccCe------------------ecHHHHHHHHHH----------hCCcEEEeecCCCCCHHHHHHHHHh
Confidence 99865322 345556666543 2355689999999999999998753
No 94
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.82 E-value=4.3e-19 Score=151.98 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=94.4
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
++++.+||++|+++++..|..++++++++|+|+|.++ ..++..+..|+..+..... .++|+++++||+|
T Consensus 49 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D 117 (163)
T cd01860 49 TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITS----------EESFEKAKSWVKELQRNAS-PNIIIALVGNKAD 117 (163)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcc
Confidence 3789999999999999999999999999999999998 6778888888888765532 6799999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
+...+. .+.+++.++... ..+.++++||+++.|+..+|+.+.+.|
T Consensus 118 ~~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 118 LESKRQ------------------VSTEEAQEYADE----------NGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred ccccCc------------------CCHHHHHHHHHH----------cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 875333 355666666554 236689999999999999999998765
No 95
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.82 E-value=1.7e-19 Score=156.42 Aligned_cols=114 Identities=10% Similarity=0.028 Sum_probs=85.1
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..||++++++|+|+|+++ ..++.....|+..+.. ..++|+++++||+|+
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~----------~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl 120 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSD----------PKSFSYCAEVYKKYFM---LGEIPCLFVAAKADL 120 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHhcc---CCCCeEEEEEEcccc
Confidence 678999999999999999999999999999999998 5666666666665422 247899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
.+++. ...+++.+|.+. + ..-.++++||++++||.++|+.+.+.++.
T Consensus 121 ~~~~~------------------~~~~~~~~~~~~-~--------~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 121 DEQQQ------------------RYEVQPDEFCRK-L--------GLPPPLHFSSKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred ccccc------------------ccccCHHHHHHH-c--------CCCCCEEEEeccCccHHHHHHHHHHHhhC
Confidence 65432 111222333222 1 11123789999999999999999988763
No 96
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.82 E-value=5.2e-19 Score=151.29 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=88.9
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+++++||++||+.++..|..|+++++++++|+|+++ ..++.....|...+.. ...++|+++++||.|
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~l~~~~~~~~~--~~~~~p~iiv~nK~D 117 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTD----------RESFEAIESWKEKVEA--ECGDIPMVLVQTKID 117 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHH--hCCCCCEEEEEEChh
Confidence 3789999999999999999999999999999999998 6667666666665533 235789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
+..+.. ...+++..+... ..+.++++||+++.|+.++|+.+..
T Consensus 118 l~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 118 LLDQAV------------------ITNEEAEALAKR----------LQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred cccccC------------------CCHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 865433 455666666654 3356788999999999999998764
No 97
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.81 E-value=4.4e-19 Score=151.54 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=89.3
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
++.+.+||++|++.++..|..++++++++|||+|.++ ..++.+...++..+.......+.|++|++||+|
T Consensus 43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~----------~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 112 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD----------EARLDESQKELKHILKNEHIKGVPVVLLANKQD 112 (160)
T ss_pred ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHhchhhcCCCEEEEEECcc
Confidence 4789999999999999999999999999999999998 678888889999988776667899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
+... . ..++....+.. ... ...+.+.+++|||++++||.++|+.+.
T Consensus 113 l~~~-~-------------------~~~~i~~~~~~--~~~--~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 113 LPGA-L-------------------TAEEITRRFKL--KKY--CSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred cccC-c-------------------CHHHHHHHcCC--ccc--CCCCcEEEEecccccCCChHHHHHHHh
Confidence 8531 1 11222111110 000 112446678899999999999999875
No 98
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.81 E-value=1.2e-18 Score=154.08 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=95.6
Q ss_pred EEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEE
Q psy14891 191 NFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFI 268 (359)
Q Consensus 191 ~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ii 268 (359)
.+.+++ +.+.+||++|+++++..|..+|++++++|+|+|+++ ..++.+...|+..+.+. ..++|++
T Consensus 42 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~~~~~~~~i~~~--~~~~pii 109 (193)
T cd04118 42 RMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTD----------SSSFERAKFWVKELQNL--EEHCKIY 109 (193)
T ss_pred EEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhc--CCCCCEE
Confidence 344443 678899999999999999999999999999999998 67777776777766543 2478999
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
|++||.|+....- .... ...+++.+|... ..+.++++||+++.||..+|+.+.+.+
T Consensus 110 lv~nK~Dl~~~~~--~~~~------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 110 LCGTKSDLIEQDR--SLRQ------------VDFHDVQDFADE----------IKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred EEEEccccccccc--ccCc------------cCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999854210 0000 344556665443 235567999999999999999999999
Q ss_pred HHhhh
Q psy14891 349 IKINL 353 (359)
Q Consensus 349 l~~~l 353 (359)
++...
T Consensus 166 ~~~~~ 170 (193)
T cd04118 166 VSRAN 170 (193)
T ss_pred HHhcc
Confidence 87543
No 99
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.81 E-value=3.8e-19 Score=156.44 Aligned_cols=129 Identities=16% Similarity=0.260 Sum_probs=96.5
Q ss_pred EEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEE
Q psy14891 189 ETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFI 268 (359)
Q Consensus 189 ~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ii 268 (359)
...+.++++++.+||++|+++++..|.+||++++++|||+|+++ ..++.++..++..+++.....++|++
T Consensus 53 ~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~----------~~~~~~~~~~l~~l~~~~~~~~~pil 122 (184)
T smart00178 53 SEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYD----------KERFAESKRELDALLSDEELATVPFL 122 (184)
T ss_pred eEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCc----------HHHHHHHHHHHHHHHcChhhcCCCEE
Confidence 34455677899999999999999999999999999999999998 77888888899998876666789999
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHH-hh-hccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKF-AL-RNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f-~~-~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
+++||+|+... + +.++..+.+.-.. .. ......+...++.+||+.++|+.++++-+.+
T Consensus 123 iv~NK~Dl~~~-~-------------------~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 123 ILGNKIDAPYA-A-------------------SEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred EEEeCccccCC-C-------------------CHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 99999998532 2 2222222211000 00 0001125678899999999999999998765
Q ss_pred H
Q psy14891 347 L 347 (359)
Q Consensus 347 ~ 347 (359)
.
T Consensus 183 ~ 183 (184)
T smart00178 183 Y 183 (184)
T ss_pred h
Confidence 3
No 100
>PTZ00099 rab6; Provisional
Probab=99.81 E-value=4.7e-19 Score=154.91 Aligned_cols=130 Identities=20% Similarity=0.203 Sum_probs=103.9
Q ss_pred ccccceeE--EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 182 VRTNGIIE--TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 182 ~~T~G~~~--~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
.||+|+.. ..+.+++ +.+.||||+||++++.+|..||++++++|+|||+++ ..++.+...|+..+.
T Consensus 10 ~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~----------~~sf~~~~~w~~~i~ 79 (176)
T PTZ00099 10 QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN----------RQSFENTTKWIQDIL 79 (176)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence 46666443 2344443 889999999999999999999999999999999999 788888888988887
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
... ..++|++||+||+|+...+. .+.+++..++.. ....+++|||+++.||
T Consensus 80 ~~~-~~~~piilVgNK~DL~~~~~------------------v~~~e~~~~~~~----------~~~~~~e~SAk~g~nV 130 (176)
T PTZ00099 80 NER-GKDVIIALVGNKTDLGDLRK------------------VTYEEGMQKAQE----------YNTMFHETSAKAGHNI 130 (176)
T ss_pred Hhc-CCCCeEEEEEECcccccccC------------------CCHHHHHHHHHH----------cCCEEEEEECCCCCCH
Confidence 653 35789999999999865433 456667666543 2345688999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14891 338 QTVFHAVMDLVIK 350 (359)
Q Consensus 338 ~~vf~~v~~~Il~ 350 (359)
.++|+.+...+..
T Consensus 131 ~~lf~~l~~~l~~ 143 (176)
T PTZ00099 131 KVLFKKIAAKLPN 143 (176)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 101
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.81 E-value=1.4e-18 Score=148.64 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=93.3
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++.+...+..++++++++|+|+|+++ ..++.+...|+..+.... ..++|+++++||+|+
T Consensus 49 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~ 117 (164)
T smart00175 49 VKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN----------RESFENLKNWLKELREYA-DPNVVIMLVGNKSDL 117 (164)
T ss_pred EEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhc
Confidence 678999999999999999999999999999999998 677777777777665443 258999999999997
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
...+. .+.+.+.++... ..+.++++||+++.|+..+|+.+.+.++.
T Consensus 118 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 118 EDQRQ------------------VSREEAEAFAEE----------HGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred ccccC------------------CCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 64322 355667666543 23557899999999999999999988764
No 102
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.81 E-value=1.9e-18 Score=149.14 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=93.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc---CCCCCeEEEEeeC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR---YFREASFILFLNK 273 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~---~~~~~~iiL~~NK 273 (359)
+.+++||++|++.+...|..++++++++|+|+|+++ ..++.+...|+..+.... ...++|+++++||
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (172)
T cd01862 49 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTN----------PKSFESLDSWRDEFLIQASPSDPENFPFVVLGNK 118 (172)
T ss_pred EEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCccCCCCceEEEEEEC
Confidence 578899999999999999999999999999999998 666666666666554432 2347999999999
Q ss_pred CCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 274 FDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 274 ~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+|+..++. ...+....+... ...+.++++||+++.|+..+|+.+.+.+++.
T Consensus 119 ~Dl~~~~~------------------~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 119 IDLEEKRQ------------------VSTKKAQQWCQS---------NGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred cccccccc------------------cCHHHHHHHHHH---------cCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 99975332 345555555543 1236788999999999999999999988876
No 103
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.81 E-value=1.2e-18 Score=151.37 Aligned_cols=122 Identities=14% Similarity=0.168 Sum_probs=88.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHH-HHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLN-LFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~-~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++||++||+.++..|..++++++++|||+|+++ ..++.+... |+..+.. ...+.|+++++||.|
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~--~~~~~piilv~nK~D 115 (173)
T cd04130 48 VRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVN----------PSSFQNISEKWIPEIRK--HNPKAPIILVGTQAD 115 (173)
T ss_pred EEEEEEECCCChhhccccccccCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHh--hCCCCCEEEEeeChh
Confidence 678999999999999999999999999999999998 777777654 5555543 235789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
+..+.- . +.. ...+.......+++..|.++. ....++++||+++.||+++|+.+.
T Consensus 116 l~~~~~--~---~~~-~~~~~~~~v~~~~~~~~a~~~---------~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 116 LRTDVN--V---LIQ-LARYGEKPVSQSRAKALAEKI---------GACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred hccChh--H---HHH-HhhcCCCCcCHHHHHHHHHHh---------CCCeEEEEeCCCCCCHHHHHHHHH
Confidence 854211 0 000 011111115677788877651 223678999999999999998664
No 104
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.81 E-value=1.4e-18 Score=150.58 Aligned_cols=127 Identities=13% Similarity=0.182 Sum_probs=92.2
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+....|...+... ..+.|+++++||+|+
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~----------~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl 116 (174)
T cd04135 48 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY-APNVPYLLVGTQIDL 116 (174)
T ss_pred EEEEEEeCCCcccccccccccCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhh
Confidence 568899999999999999999999999999999998 677776654444433322 468999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
..+.. ....+ ..+.....+.+++..+.+. .....++++||+++.||+++|+.+.+.++
T Consensus 117 ~~~~~--~~~~~----~~~~~~~v~~~~~~~~~~~---------~~~~~~~e~Sa~~~~gi~~~f~~~~~~~~ 174 (174)
T cd04135 117 RDDPK--TLARL----NDMKEKPVTVEQGQKLAKE---------IGAHCYVECSALTQKGLKTVFDEAILAIL 174 (174)
T ss_pred hcChh--hHHHH----hhccCCCCCHHHHHHHHHH---------cCCCEEEEecCCcCCCHHHHHHHHHHHhC
Confidence 65432 11111 1111212566777777654 12234678999999999999999988763
No 105
>PLN03118 Rab family protein; Provisional
Probab=99.80 E-value=1.7e-18 Score=155.55 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=93.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc-cCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN-RYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~-~~~~~~~iiL~~NK~D 275 (359)
+.+.+|||+||++++.+|..|+++++++|+|+|+++ ..++.+...+|...+.. ....+.|++|++||+|
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~----------~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~D 131 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTR----------RETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVD 131 (211)
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 678999999999999999999999999999999998 67777776666655542 2235689999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+..++. .+.+++..+... ..+.++++||+++.||+++|+.+.+.++..
T Consensus 132 l~~~~~------------------i~~~~~~~~~~~----------~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 132 RESERD------------------VSREEGMALAKE----------HGCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred ccccCc------------------cCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 865433 345555555543 345678999999999999999999988754
No 106
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.80 E-value=1.5e-18 Score=148.21 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=91.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++.++..|..++++++++|+|+|+++ .+++.+...|+..+.... ..++|+++++||+|+
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~ 117 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN----------RQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhc
Confidence 578999999999999999999999999999999998 778888888888876532 247999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
.+.+. ...+.+..+... ..+.++++||+++.|++++|+.+.+.
T Consensus 118 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 118 SDKRQ------------------VSTEEGEKKAKE----------LNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred cccCc------------------cCHHHHHHHHHH----------hCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 64333 345555555543 33667899999999999999998764
No 107
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.80 E-value=1.5e-18 Score=154.50 Aligned_cols=118 Identities=12% Similarity=0.090 Sum_probs=90.9
Q ss_pred ceeeEEecCCccccc----cc----hhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc--CCCCCe
Q psy14891 197 SIVNMVDVGGQRSQR----RK----WIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR--YFREAS 266 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r----~~----w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~--~~~~~~ 266 (359)
+.+++|||+|++.+. .. +..++++++++|+|||+++ ..++.....|++.+.+.. ...++|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~----------~~S~~~~~~~~~~i~~~~~~~~~~~p 118 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICS----------PDSFHYVKLLRQQILETRPAGNKEPP 118 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 678899999976432 12 3345899999999999998 788888888888887654 246799
Q ss_pred EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 267 FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 267 iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
++|++||+|+..++. .+.+++.++..+. ..+.+++|||+++.||+++|..+.+
T Consensus 119 iiivgNK~Dl~~~~~------------------~~~~~~~~~~~~~---------~~~~~~e~Sak~g~~v~~lf~~i~~ 171 (198)
T cd04142 119 IVVVGNKRDQQRHRF------------------APRHVLSVLVRKS---------WKCGYLECSAKYNWHILLLFKELLI 171 (198)
T ss_pred EEEEEECcccccccc------------------ccHHHHHHHHHHh---------cCCcEEEecCCCCCCHHHHHHHHHH
Confidence 999999999976555 4455555444331 3466789999999999999999999
Q ss_pred HHHHh
Q psy14891 347 LVIKI 351 (359)
Q Consensus 347 ~Il~~ 351 (359)
.++.+
T Consensus 172 ~~~~~ 176 (198)
T cd04142 172 SATTR 176 (198)
T ss_pred Hhhcc
Confidence 88754
No 108
>KOG0081|consensus
Probab=99.80 E-value=2.5e-19 Score=148.21 Aligned_cols=144 Identities=22% Similarity=0.250 Sum_probs=121.8
Q ss_pred hhccCCCccCcccccccccccccee--EEEEeeC-----------CceeeEEecCCccccccchhhhccCCcEEEEEEEC
Q psy14891 164 RICDLKYVPNATDVLRARVRTNGII--ETNFRLG-----------ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVAL 230 (359)
Q Consensus 164 ri~~~~y~Pt~~Dil~~r~~T~G~~--~~~~~~~-----------~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dl 230 (359)
|+....|.|.- +.|+||. +..+.++ .+.+++|||+||++||++...+|+++-+.++++|+
T Consensus 28 ~YTD~~F~~qF-------IsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDl 100 (219)
T KOG0081|consen 28 QYTDGKFNTQF-------ISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDL 100 (219)
T ss_pred EecCCccccee-------EEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEec
Confidence 45555565543 5788864 4444442 17899999999999999999999999999999999
Q ss_pred CCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHH
Q psy14891 231 SGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQ 310 (359)
Q Consensus 231 s~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~ 310 (359)
++ ..++-+...|+..+-.+....+.-|+|++||+||...+. ++.++|.....
T Consensus 101 T~----------eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~------------------Vs~~qa~~La~ 152 (219)
T KOG0081|consen 101 TS----------EQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRV------------------VSEDQAAALAD 152 (219)
T ss_pred cc----------hHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhh------------------hhHHHHHHHHH
Confidence 99 899999999999998888888999999999999999888 67777777766
Q ss_pred HHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 311 HKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 311 ~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
+ ..+.+++|||-++.||++..+.+.+.|+++.
T Consensus 153 k----------yglPYfETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 153 K----------YGLPYFETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred H----------hCCCeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence 5 5788999999999999999999999998764
No 109
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.80 E-value=1.7e-18 Score=148.51 Aligned_cols=112 Identities=14% Similarity=0.119 Sum_probs=87.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++.+|..+++++++++||+|+++ ..++.+...|+..+.... .+.|+++++||+|+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl 119 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSN----------KASFENCSRWVNKVRTAS--KHMPGVLVGNKMDL 119 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence 789999999999999999999999999999999998 666776667776665432 56899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
..+.. .+...+..+... ..+.++.+||+++.+|.++|+.+.+.+
T Consensus 120 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 120 ADKAE------------------VTDAQAQAFAQA----------NQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ccccC------------------CCHHHHHHHHHH----------cCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 54322 233344444322 235578899999999999999988764
No 110
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.80 E-value=1.7e-18 Score=150.09 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=95.1
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHH-HHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLN-LFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~-~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++|||+||+.++..|..++++++++|+|+|+++ .+++.+... |+..+... ..++|++|++||+|
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D 113 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS----------PASFENVKEKWYPEVKHF--CPNTPIILVGTKLD 113 (174)
T ss_pred EEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCCCCEEEEecChh
Confidence 578999999999999999999999999999999998 777777654 55555432 35899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
+..++. ...++ ........+.+++.++.+.. ....++++||+++.||.++|+.+.+.+++
T Consensus 114 l~~~~~--~~~~~----~~~~~~~v~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 114 LREDKS--TLREL----SKQKQEPVTYEQGEALAKRI---------GAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred hhhChh--hhhhh----hcccCCCccHHHHHHHHHHc---------CCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 876432 11111 11111225667777776651 22357889999999999999999988764
No 111
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.80 E-value=1.7e-18 Score=149.07 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=89.1
Q ss_pred ceeeEEecCCccc-cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC-CCCCeEEEEeeCC
Q psy14891 197 SIVNMVDVGGQRS-QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY-FREASFILFLNKF 274 (359)
Q Consensus 197 ~~l~i~D~~Gq~~-~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~-~~~~~iiL~~NK~ 274 (359)
+.+++||++|+++ +...+..++++++++|+|+|+++ ..++.....|+..+..... ..++|++|++||+
T Consensus 47 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 116 (165)
T cd04146 47 VSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITD----------RSSFDEISQLKQLIREIKKRDREIPVILVGNKA 116 (165)
T ss_pred EEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 6789999999996 35678889999999999999998 6777777666666554322 4579999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCC-chHHHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDT-SNVQTVFHAVMDLVI 349 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~-~ni~~vf~~v~~~Il 349 (359)
|+..++. .+.+++.++... ....++++||+++ .||.++|..+.+.+.
T Consensus 117 Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 117 DLLHYRQ------------------VSTEEGEKLASE----------LGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred chHHhCc------------------cCHHHHHHHHHH----------cCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 9865433 456667777654 2245689999999 599999999987654
No 112
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.79 E-value=1e-18 Score=155.80 Aligned_cols=128 Identities=17% Similarity=0.127 Sum_probs=99.5
Q ss_pred ccccceeEEEE--ee--CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 182 VRTNGIIETNF--RL--GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 182 ~~T~G~~~~~~--~~--~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
.||+|+..... .+ +.++++||||+|+++++.+|..||++++++|+|||+++ ..++.....|...+.
T Consensus 25 ~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~----------~~S~~~i~~w~~~i~ 94 (200)
T smart00176 25 VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA----------RVTYKNVPNWHRDLV 94 (200)
T ss_pred CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC----------hHHHHHHHHHHHHHH
Confidence 36777544333 33 34899999999999999999999999999999999999 778887777777776
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
.. ..++|++||+||+|+....+ ..+. .++... ..+.+++|||++++||
T Consensus 95 ~~--~~~~piilvgNK~Dl~~~~v-------------------~~~~-~~~~~~----------~~~~~~e~SAk~~~~v 142 (200)
T smart00176 95 RV--CENIPIVLCGNKVDVKDRKV-------------------KAKS-ITFHRK----------KNLQYYDISAKSNYNF 142 (200)
T ss_pred Hh--CCCCCEEEEEECcccccccC-------------------CHHH-HHHHHH----------cCCEEEEEeCCCCCCH
Confidence 53 25899999999999854222 2222 234332 4577899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14891 338 QTVFHAVMDLVIKI 351 (359)
Q Consensus 338 ~~vf~~v~~~Il~~ 351 (359)
+++|..+...+++.
T Consensus 143 ~~~F~~l~~~i~~~ 156 (200)
T smart00176 143 EKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 113
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.79 E-value=2.2e-18 Score=146.83 Aligned_cols=113 Identities=13% Similarity=0.193 Sum_probs=88.4
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..++.+++++++|+|+++ .+++.....|+..+.... ..+.|+++++||+|+
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~D~ 117 (162)
T cd04123 49 IDLAIWDTAGQERYHALGPIYYRDADGAILVYDITD----------ADSFQKVKKWIKELKQMR-GNNISLVIVGNKIDL 117 (162)
T ss_pred EEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccc
Confidence 578999999999999999999999999999999998 666766666666664432 237899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
..++- .+.++..+++.. ..+.++++||+++.++.++|+.+.+.+
T Consensus 118 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 118 ERQRV------------------VSKSEAEEYAKS----------VGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred ccccC------------------CCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 74332 334444555443 335568999999999999999988765
No 114
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.79 E-value=4.4e-18 Score=145.49 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=92.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++.+...|..++++++++|+|+|+++ .+++.....|+..+.......++|+++++||+|+
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~ 118 (161)
T cd01863 49 VKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTR----------RDTFTNLETWLNELETYSTNNDIVKMLVGNKIDK 118 (161)
T ss_pred EEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcc
Confidence 678999999999999999999999999999999998 7778877777777766555568999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
.... .+.+++..+... ..+.++++||+++.|++++|+.+.+.
T Consensus 119 ~~~~-------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 119 ENRE-------------------VTREEGLKFARK----------HNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred cccc-------------------cCHHHHHHHHHH----------cCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 7322 345566666654 35678999999999999999987764
No 115
>KOG0076|consensus
Probab=99.79 E-value=2.8e-19 Score=150.18 Aligned_cols=136 Identities=21% Similarity=0.260 Sum_probs=110.7
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
.||+|.+.-++.+.+..+.+||.|||+..|++|..||..+++|||++|.++ ..|+.++...|++++.+..
T Consensus 54 ~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~----------~eR~~~~~t~~~~v~~~E~ 123 (197)
T KOG0076|consen 54 TPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATD----------RERFEESKTAFEKVVENEK 123 (197)
T ss_pred ecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCC----------HHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
..++|+++.+||.|+.++-- ..+ ++.-|......+.+...+..+||.++++|++-.
T Consensus 124 leg~p~L~lankqd~q~~~~--------------------~~E----l~~~~~~~e~~~~rd~~~~pvSal~gegv~egi 179 (197)
T KOG0076|consen 124 LEGAPVLVLANKQDLQNAME--------------------AAE----LDGVFGLAELIPRRDNPFQPVSALTGEGVKEGI 179 (197)
T ss_pred hcCCchhhhcchhhhhhhhh--------------------HHH----HHHHhhhhhhcCCccCccccchhhhcccHHHHH
Confidence 99999999999999865321 111 222222111122345556679999999999988
Q ss_pred HHHHHHHHHh
Q psy14891 342 HAVMDLVIKI 351 (359)
Q Consensus 342 ~~v~~~Il~~ 351 (359)
.-+...+-++
T Consensus 180 ~w~v~~~~kn 189 (197)
T KOG0076|consen 180 EWLVKKLEKN 189 (197)
T ss_pred HHHHHHHhhc
Confidence 8777766554
No 116
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.79 E-value=3.5e-18 Score=145.80 Aligned_cols=129 Identities=17% Similarity=0.234 Sum_probs=100.9
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
+|+|+....+.+.++.+.+||++|++.++..|..++.+++++++|+|+++ ..++.++..++..++.....
T Consensus 29 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~~~~~~~~~~~~~~~~~ 98 (158)
T cd00878 29 PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSD----------RERIEEAKEELHKLLNEEEL 98 (158)
T ss_pred CCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCccc
Confidence 45555555666678899999999999999999999999999999999998 77899999999999886556
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|+++++||+|+.... +.++..+.+.... ...+.+.++++||+++.|+.++|+
T Consensus 99 ~~~piiiv~nK~D~~~~~--------------------~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 99 KGVPLLIFANKQDLPGAL--------------------SVSELIEKLGLEK-----ILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCcEEEEeeccCCcccc--------------------CHHHHHHhhChhh-----ccCCcEEEEEeeCCCCCCHHHHHH
Confidence 789999999999986421 2233322222110 112557788999999999999999
Q ss_pred HHHH
Q psy14891 343 AVMD 346 (359)
Q Consensus 343 ~v~~ 346 (359)
.+.+
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 8764
No 117
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.79 E-value=4.3e-18 Score=145.50 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=93.5
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+.+||++|+..+...|..++++++++++|+|+++ ..++.....++..+.......+.|+++++||+|
T Consensus 47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D 116 (164)
T cd04139 47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITD----------MESFTATAEFREQILRVKDDDNVPLLLVGNKCD 116 (164)
T ss_pred EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccc
Confidence 3678999999999999999999999999999999998 677777888888887654456899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
+..++. ...+...++... ..+.++++||++++||.++|+.+.+.+.+
T Consensus 117 ~~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 163 (164)
T cd04139 117 LEDKRQ------------------VSSEEAANLARQ----------WGVPYVETSAKTRQNVEKAFYDLVREIRQ 163 (164)
T ss_pred cccccc------------------cCHHHHHHHHHH----------hCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 875332 233444444432 22457899999999999999999877653
No 118
>KOG0083|consensus
Probab=99.79 E-value=2.5e-19 Score=144.05 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=107.9
Q ss_pred ccccceeE--EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 182 VRTNGIIE--TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 182 ~~T~G~~~--~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
++|+|+.. .-+.+++ +++++|||+||++||+....||++++++++++|+++ ..++.....|+.+|-
T Consensus 28 istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydian----------kasfdn~~~wlsei~ 97 (192)
T KOG0083|consen 28 ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIAN----------KASFDNCQAWLSEIH 97 (192)
T ss_pred eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeeccc----------chhHHHHHHHHHHHH
Confidence 47888654 3444544 899999999999999999999999999999999999 888998888888885
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
.. .-..+.+.|++||+|+..++. ...++..+..+. ..+.+.+|||++|-||
T Consensus 98 ey-~k~~v~l~llgnk~d~a~er~------------------v~~ddg~kla~~----------y~ipfmetsaktg~nv 148 (192)
T KOG0083|consen 98 EY-AKEAVALMLLGNKCDLAHERA------------------VKRDDGEKLAEA----------YGIPFMETSAKTGFNV 148 (192)
T ss_pred HH-HHhhHhHhhhccccccchhhc------------------cccchHHHHHHH----------HCCCceeccccccccH
Confidence 43 234678899999999988877 334445554444 5688999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy14891 338 QTVFHAVMDLVIKIN 352 (359)
Q Consensus 338 ~~vf~~v~~~Il~~~ 352 (359)
...|..+++.+.+..
T Consensus 149 d~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 149 DLAFLAIAEELKKLK 163 (192)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999988754
No 119
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.77 E-value=1.2e-17 Score=144.66 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=96.4
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||.|+....+.+.+..+.+||++|++.++..|..++++++++++|+|.++ ..++.+...++..+......
T Consensus 44 ~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~----------~~~~~~~~~~~~~~~~~~~~ 113 (173)
T cd04155 44 PTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSAD----------KKRLEEAGAELVELLEEEKL 113 (173)
T ss_pred CCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhChhh
Confidence 45555555666678899999999999999999999999999999999998 66778888888888766555
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.++|+++++||+|+.+.. +.++..+. + .+..-..+..++..+||++++||+++|+
T Consensus 114 ~~~p~ivv~nK~D~~~~~--------------------~~~~i~~~----l-~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 168 (173)
T cd04155 114 AGVPVLVFANKQDLATAA--------------------PAEEIAEA----L-NLHDLRDRTWHIQACSAKTGEGLQEGMN 168 (173)
T ss_pred cCCCEEEEEECCCCccCC--------------------CHHHHHHH----c-CCcccCCCeEEEEEeECCCCCCHHHHHH
Confidence 679999999999985421 12222111 1 1111123455677899999999999999
Q ss_pred HHHH
Q psy14891 343 AVMD 346 (359)
Q Consensus 343 ~v~~ 346 (359)
.+.+
T Consensus 169 ~l~~ 172 (173)
T cd04155 169 WVCK 172 (173)
T ss_pred HHhc
Confidence 8753
No 120
>KOG0395|consensus
Probab=99.77 E-value=1.1e-17 Score=148.41 Aligned_cols=136 Identities=21% Similarity=0.217 Sum_probs=113.8
Q ss_pred CCccCccccccccccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHH
Q psy14891 169 KYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDE 248 (359)
Q Consensus 169 ~y~Pt~~Dil~~r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~e 248 (359)
+|.||.+|.++... .+.-....+.|+||+||+.+..+-..|.++++|.+.||++++ ..+|.+
T Consensus 31 ~y~ptied~y~k~~--------~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd----------~~SF~~ 92 (196)
T KOG0395|consen 31 DYDPTIEDSYRKEL--------TVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITD----------RSSFEE 92 (196)
T ss_pred ccCCCccccceEEE--------EECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCC----------HHHHHH
Confidence 47888886553321 111123678899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEE
Q psy14891 249 SLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHF 328 (359)
Q Consensus 249 s~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~ 328 (359)
...+++.+...+....+|++|+|||+|+...|. +..+++..+... ..+.+.+
T Consensus 93 ~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~------------------V~~eeg~~la~~----------~~~~f~E 144 (196)
T KOG0395|consen 93 AKQLREQILRVKGRDDVPIILVGNKCDLERERQ------------------VSEEEGKALARS----------WGCAFIE 144 (196)
T ss_pred HHHHHHHHHHhhCcCCCCEEEEEEcccchhccc------------------cCHHHHHHHHHh----------cCCcEEE
Confidence 999999997777777899999999999998777 778888888444 4566899
Q ss_pred eeccCCchHHHHHHHHHHHHHH
Q psy14891 329 TTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 329 tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
|||+...||.++|..+...+-.
T Consensus 145 ~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 145 TSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred eeccCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999988765
No 121
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.77 E-value=1.6e-17 Score=140.51 Aligned_cols=129 Identities=19% Similarity=0.254 Sum_probs=96.3
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+..+++.+.+||++|++.++..|..++.+++++++|+|+++ ..++.....++..+......
T Consensus 30 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~ 99 (159)
T cd04159 30 PTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD----------RTALEAAKNELHDLLEKPSL 99 (159)
T ss_pred CCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHcChhh
Confidence 45555555566677899999999999999999999999999999999998 56677777888888776556
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|+++++||+|+..+. ..+...+.+. +.....+.+.++.+||+++.+|.++|+
T Consensus 100 ~~~p~iiv~nK~D~~~~~--------------------~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 100 EGIPLLVLGNKNDLPGAL--------------------SVDELIEQMN-----LKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred cCCCEEEEEeCccccCCc--------------------CHHHHHHHhC-----cccccCCceEEEEEEeccCCChHHHHH
Confidence 789999999999975421 1111111111 111112456788999999999999999
Q ss_pred HHHH
Q psy14891 343 AVMD 346 (359)
Q Consensus 343 ~v~~ 346 (359)
.+.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 8754
No 122
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.77 E-value=1.3e-17 Score=151.07 Aligned_cols=115 Identities=21% Similarity=0.166 Sum_probs=89.1
Q ss_pred CceeeEEecCCccccccchhhhcc-CCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFD-DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~-~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
...+.+||++|++ ......|+. +++++|+|||+++ ..++....+|+..+.......++|++||+||+
T Consensus 49 ~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td----------~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~ 116 (221)
T cd04148 49 ESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTD----------RSSFERASELRIQLRRNRQLEDRPIILVGNKS 116 (221)
T ss_pred EEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECh
Confidence 4778999999998 223345667 9999999999999 77888888888877665445689999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
|+..++. .+.+++.++... ..+.+++|||+++.||.++|+.+.+.+..
T Consensus 117 Dl~~~~~------------------v~~~~~~~~a~~----------~~~~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 117 DLARSRE------------------VSVQEGRACAVV----------FDCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred hccccce------------------ecHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 9865443 345555555433 23457899999999999999999988863
No 123
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.77 E-value=1.5e-17 Score=147.98 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=91.3
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|+..++.+|..++.+++++|||+|+++ ..++.+...|+..+.......++|++|++||.|+
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 116 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDD----------PESFEEVERLREEILEVKEDKFVPIVVVGNKADS 116 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccc
Confidence 678999999999999999999999999999999998 7788888888888877655568999999999998
Q ss_pred chh-hhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 277 FRE-KILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 277 ~~~-k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
... +. ...+.+.+.+... ..+.++++||+++.||.++|+.+.+.+.
T Consensus 117 ~~~~~~------------------v~~~~~~~~~~~~---------~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 117 LEEERQ------------------VPAKDALSTVELD---------WNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cccccc------------------ccHHHHHHHHHhh---------cCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 642 21 2333333332211 2244678999999999999999988764
No 124
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=2.3e-17 Score=142.16 Aligned_cols=114 Identities=17% Similarity=0.175 Sum_probs=84.1
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..++..++++|+|+|+++ ..++.....|+..+-. ....+.|+++++||+|+
T Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~-~~~~~~~~i~v~NK~D~ 124 (169)
T cd04114 56 IKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIEQ-YANNKVITILVGNKIDL 124 (169)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHH-hCCCCCeEEEEEECccc
Confidence 678899999999999999999999999999999997 5556555555544422 22246899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
...+- ...+....|.+. ...+++++||+++.|++++|+.+.+.++
T Consensus 125 ~~~~~------------------i~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 169 (169)
T cd04114 125 AERRE------------------VSQQRAEEFSDA----------QDMYYLETSAKESDNVEKLFLDLACRLI 169 (169)
T ss_pred ccccc------------------cCHHHHHHHHHH----------cCCeEEEeeCCCCCCHHHHHHHHHHHhC
Confidence 64322 222223333221 2356789999999999999999987653
No 125
>KOG0088|consensus
Probab=99.76 E-value=1.2e-18 Score=144.07 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=102.7
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
...+.||||+||++|..+-+.||++++++++|||++| ..+|.....|..++-.. .-..+.++||+||+|
T Consensus 61 ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITD----------rdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiD 129 (218)
T KOG0088|consen 61 RADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITD----------RDSFQKVKNWVLELRTM-LGNEIELLIVGNKID 129 (218)
T ss_pred eeeeeeeeccchHhhhccCceEEeCCCceEEEEeccc----------hHHHHHHHHHHHHHHHH-hCCeeEEEEecCccc
Confidence 3789999999999999999999999999999999999 88898888888887553 234678999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
|.+++. ++.++|..|.+. -.-.+++|||+++.+|.++|..+...++...
T Consensus 130 LEeeR~------------------Vt~qeAe~YAes----------vGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 130 LEEERQ------------------VTRQEAEAYAES----------VGALYMETSAKDNVGISELFESLTAKMIEHS 178 (218)
T ss_pred HHHhhh------------------hhHHHHHHHHHh----------hchhheecccccccCHHHHHHHHHHHHHHHh
Confidence 999888 889999999887 2334578999999999999999998888643
No 126
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.76 E-value=2.4e-17 Score=143.86 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=96.4
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|+++++..|..++.+++++|+|+|+++ ..++.....++..+.+.....+.|++|++||+|+
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 118 (180)
T cd04137 49 YHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTS----------RKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDL 118 (180)
T ss_pred EEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhh
Confidence 567899999999999999999999999999999999 7888889999999988655567899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhhh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINL 353 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l 353 (359)
...+. ...++...+... ...+++.+||+++.+|.++|..+.+.+.+...
T Consensus 119 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 167 (180)
T cd04137 119 HTQRQ------------------VSTEEGKELAES----------WGAAFLESSARENENVEEAFELLIEEIEKVEN 167 (180)
T ss_pred hhcCc------------------cCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 64332 233333333322 23567889999999999999999998876643
No 127
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.76 E-value=3.4e-17 Score=142.01 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=87.6
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+|||+|++.++..|..++.+++++++|+|+++ ..++......|...+.. ...++|+++++||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl 117 (175)
T cd01870 49 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDL 117 (175)
T ss_pred EEEEEEeCCCchhhhhccccccCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-hCCCCCEEEEeeChhc
Confidence 678999999999999999999999999999999998 56666665444333332 2357899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
..... ....+. .........+++.++... .....+++|||+++.||+++|+.+...
T Consensus 118 ~~~~~--~~~~i~----~~~~~~v~~~~~~~~~~~---------~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 118 RNDEH--TRRELA----KMKQEPVKPEEGRDMANK---------IGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred ccChh--hhhhhh----hccCCCccHHHHHHHHHH---------cCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 64321 111110 001111345566666554 123457889999999999999988754
No 128
>KOG0075|consensus
Probab=99.76 E-value=9.5e-18 Score=137.16 Aligned_cols=130 Identities=18% Similarity=0.291 Sum_probs=108.3
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
.||+|++...++-+++++.+||+|||+++|++|..|++++++++||+|.++ ...+.-|...+.+++..+.
T Consensus 50 iptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad----------~~k~~~sr~EL~~LL~k~~ 119 (186)
T KOG0075|consen 50 IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAAD----------PDKLEASRSELHDLLDKPS 119 (186)
T ss_pred cccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCC----------cccchhhHHHHHHHhcchh
Confidence 599999999999999999999999999999999999999999999999999 8889999999999999999
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
+.++|++++|||.|+... + . ....|.+.-+. .-..|.+-++..||++..||+.+.
T Consensus 120 l~gip~LVLGnK~d~~~A-L--~--------------------~~~li~rmgL~--sitdREvcC~siScke~~Nid~~~ 174 (186)
T KOG0075|consen 120 LTGIPLLVLGNKIDLPGA-L--S--------------------KIALIERMGLS--SITDREVCCFSISCKEKVNIDITL 174 (186)
T ss_pred hcCCcEEEecccccCccc-c--c--------------------HHHHHHHhCcc--ccccceEEEEEEEEcCCccHHHHH
Confidence 999999999999998653 2 0 11122221111 112488999999999999999777
Q ss_pred HHHHH
Q psy14891 342 HAVMD 346 (359)
Q Consensus 342 ~~v~~ 346 (359)
+=+.+
T Consensus 175 ~Wli~ 179 (186)
T KOG0075|consen 175 DWLIE 179 (186)
T ss_pred HHHHH
Confidence 65544
No 129
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.75 E-value=3e-17 Score=138.61 Aligned_cols=111 Identities=15% Similarity=0.210 Sum_probs=89.1
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
...+.+||++|++.++..|..++++++++|+|+|+++ .+.+.+...|+..+.... ..+.|+++++||+|
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 116 (159)
T cd00154 48 TVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITN----------RESFENLDKWLKELKEYA-PENIPIILVGNKID 116 (159)
T ss_pred EEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCcEEEEEEccc
Confidence 3788999999999999999999999999999999998 666777777777766543 25789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
+...+. ...++..++... ..+.++++||+++.+|.++|+.+.
T Consensus 117 ~~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 117 LEDQRQ------------------VSTEEAQQFAKE----------NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cccccc------------------ccHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHh
Confidence 863222 345666666554 346688999999999999998775
No 130
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.75 E-value=3.2e-17 Score=141.44 Aligned_cols=120 Identities=17% Similarity=0.134 Sum_probs=88.2
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
++++++||++|++.++..|..++.+++++++|+|+++ ..++.+....|...+.... .++|+++++||+|
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~D 114 (166)
T cd01893 46 RVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDR----------PSTLERIRTKWLPLIRRLG-VKVPIILVGNKSD 114 (166)
T ss_pred eEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchh
Confidence 4688999999999999999999999999999999998 6666665544444444322 3789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
+...+. . ...++....+..+|.. ...+.+|||+++.|++++|..+...+++
T Consensus 115 l~~~~~--~---------------~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 115 LRDGSS--Q---------------AGLEEEMLPIMNEFRE-------IETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred cccccc--h---------------hHHHHHHHHHHHHHhc-------ccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 965433 0 1122333344444421 1246789999999999999999988764
No 131
>KOG0097|consensus
Probab=99.75 E-value=1.2e-17 Score=135.67 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=103.0
Q ss_pred ccccee--EEEEeeC--CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 183 RTNGII--ETNFRLG--ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 183 ~T~G~~--~~~~~~~--~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
.|+|+. ...+++. .++++|||++||++||....+||+++.+.+.|+|++. .......-.|+... .
T Consensus 42 htigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditr----------rstynhlsswl~da-r 110 (215)
T KOG0097|consen 42 HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDA-R 110 (215)
T ss_pred cccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehh----------hhhhhhHHHHHhhh-h
Confidence 367743 3444554 4899999999999999999999999999999999997 33333333333333 2
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
+-..+++.|+|++||.||..++- ..+++|..|..+ ..+.+.+.||++++||+
T Consensus 111 ~ltnpnt~i~lignkadle~qrd------------------v~yeeak~faee----------ngl~fle~saktg~nve 162 (215)
T KOG0097|consen 111 NLTNPNTVIFLIGNKADLESQRD------------------VTYEEAKEFAEE----------NGLMFLEASAKTGQNVE 162 (215)
T ss_pred ccCCCceEEEEecchhhhhhccc------------------CcHHHHHHHHhh----------cCeEEEEecccccCcHH
Confidence 23346889999999999977665 789999999887 66788899999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14891 339 TVFHAVMDLVIKI 351 (359)
Q Consensus 339 ~vf~~v~~~Il~~ 351 (359)
..|-..++.|.++
T Consensus 163 dafle~akkiyqn 175 (215)
T KOG0097|consen 163 DAFLETAKKIYQN 175 (215)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 132
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.75 E-value=4e-17 Score=143.89 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=89.9
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHH-HHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLN-LFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~-~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+.+||++|++.++..+..++++++++|+|+|+++ ..++.+... |+..+... ..++|++|++||+|
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~----------~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~D 116 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDT----------PDSLENVRTKWIEEVRRY--CPNVPVILVGLKKD 116 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChh
Confidence 568899999999998888888999999999999998 666776654 44444332 34799999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+..+.. .... . -.....+.+++..+.+. + ..+.+++|||+++.||+++|+.+.+.++..
T Consensus 117 l~~~~~--~~~~---~---~~~~~~~~~~~~~~~~~-~--------~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 117 LRQDAV--AKEE---Y---RTQRFVPIQQGKRVAKE-I--------GAKKYMECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred hhhCcc--cccc---c---ccCCcCCHHHHHHHHHH-h--------CCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence 854322 1000 0 00001445666666544 1 234678999999999999999999887654
No 133
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.74 E-value=5.5e-17 Score=137.88 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=94.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++.+...|..++++++++++|+|+++ ..++.+...++..+.+......+|+++++||+|+
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 116 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITD----------RESFEEIKGYREQILRVKDDEDIPIVLVGNKCDL 116 (160)
T ss_pred EEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcc
Confidence 678999999999999999999999999999999998 6778888888888876544358999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
...+. .+.+.+..+... ..+.++.+||+++.||+++|..+.+.|
T Consensus 117 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 117 ENERQ------------------VSKEEGKALAKE----------WGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred cccce------------------ecHHHHHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 76333 355666666654 225678999999999999999988653
No 134
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.74 E-value=8e-17 Score=145.09 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=90.1
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+++||++|++.++..|..|+.+++++|+|+|+++ ..++.+...|+..+... ..+.|+++++||+|
T Consensus 57 ~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~D 124 (215)
T PTZ00132 57 PICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS----------RITYKNVPNWHRDIVRV--CENIPIVLVGNKVD 124 (215)
T ss_pred EEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEECcc
Confidence 4889999999999999999999999999999999998 67777777777776543 35789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+.+... .. +...+... ..+.++++||+++.||+++|..++..++..
T Consensus 125 l~~~~~-------------------~~-~~~~~~~~----------~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 125 VKDRQV-------------------KA-RQITFHRK----------KNLQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred CccccC-------------------CH-HHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 854322 11 22233322 346678999999999999999999888753
No 135
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.74 E-value=6.8e-17 Score=139.28 Aligned_cols=123 Identities=14% Similarity=0.170 Sum_probs=89.2
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++||+.+...+..+++.++++++|+|+++ ..++.+....|...+... ..+.|+++++||+|+
T Consensus 48 ~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl 116 (171)
T cd00157 48 VNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDS----------PSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDL 116 (171)
T ss_pred EEEEEEeCCCcccccccchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHh
Confidence 678999999999998888889999999999999998 677777666555444432 248999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
....- ....+ .+.......+++.++... .+...++++||+++.|+.++|+.+.+
T Consensus 117 ~~~~~--~~~~~-----~~~~~~v~~~~~~~~~~~---------~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 117 RDDEN--TLKKL-----EKGKEPITPEEGEKLAKE---------IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhchh--hhhhc-----ccCCCccCHHHHHHHHHH---------hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 76432 11111 111111345666666554 13347889999999999999998764
No 136
>PLN00023 GTP-binding protein; Provisional
Probab=99.72 E-value=5.5e-17 Score=152.44 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=62.6
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC-----------CCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY-----------FREA 265 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~-----------~~~~ 265 (359)
+.++||||+||++++.+|..||++++++|+|+|+++ ..++.+...|++.+..... ..++
T Consensus 83 v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITd----------r~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~i 152 (334)
T PLN00023 83 FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQ----------RRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPV 152 (334)
T ss_pred EEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence 679999999999999999999999999999999999 7777777788888765421 1368
Q ss_pred eEEEEeeCCCcchh
Q psy14891 266 SFILFLNKFDLFRE 279 (359)
Q Consensus 266 ~iiL~~NK~Dl~~~ 279 (359)
|++||+||+||..+
T Consensus 153 pIILVGNK~DL~~~ 166 (334)
T PLN00023 153 PYIVIGNKADIAPK 166 (334)
T ss_pred cEEEEEECcccccc
Confidence 99999999998653
No 137
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.72 E-value=5.6e-17 Score=144.68 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=64.8
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc----------------
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR---------------- 260 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~---------------- 260 (359)
+.+++||++||++++..|..||++++++|+|+|+++ ..++.....|+.++.+..
T Consensus 54 ~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn----------~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~ 123 (202)
T cd04102 54 FFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTN----------RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSE 123 (202)
T ss_pred EEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcC----------hHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence 679999999999999999999999999999999999 788888888888886531
Q ss_pred --CCCCCeEEEEeeCCCcchhhh
Q psy14891 261 --YFREASFILFLNKFDLFREKI 281 (359)
Q Consensus 261 --~~~~~~iiL~~NK~Dl~~~k~ 281 (359)
...++|++|+|||.|+..++.
T Consensus 124 ~~~~~~~PiilVGnK~Dl~~~r~ 146 (202)
T cd04102 124 QFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred ccCCCCceEEEEEECccchhhcc
Confidence 124789999999999977654
No 138
>KOG0072|consensus
Probab=99.72 E-value=3.6e-17 Score=133.40 Aligned_cols=134 Identities=18% Similarity=0.189 Sum_probs=111.3
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
.||+|++...+.+++.++++||.|||.+.|..|..||.+++++|||||.+| ..|+.-+...|..++..+.
T Consensus 47 kPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd----------~dris~a~~el~~mL~E~e 116 (182)
T KOG0072|consen 47 KPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSD----------RDRISIAGVELYSMLQEEE 116 (182)
T ss_pred CCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccc----------hhhhhhhHHHHHHHhccHh
Confidence 599999999999999999999999999999999999999999999999999 8889999999999999999
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
+.++.+++|+||+|...... ..++.+-+. +..-+++.+..+.|||+.++++..++
T Consensus 117 Lq~a~llv~anKqD~~~~~t--------------------~~E~~~~L~-----l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 117 LQHAKLLVFANKQDYSGALT--------------------RSEVLKMLG-----LQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred hcCceEEEEeccccchhhhh--------------------HHHHHHHhC-----hHHHhhheeEEEeeccccccCCcHHH
Confidence 99999999999999765322 222222111 11111366888999999999999999
Q ss_pred HHHHHHHHH
Q psy14891 342 HAVMDLVIK 350 (359)
Q Consensus 342 ~~v~~~Il~ 350 (359)
+=+.+.+-.
T Consensus 172 DWL~~~l~~ 180 (182)
T KOG0072|consen 172 DWLQRPLKS 180 (182)
T ss_pred HHHHHHHhc
Confidence 988777643
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.68 E-value=7.4e-16 Score=138.68 Aligned_cols=133 Identities=18% Similarity=0.132 Sum_probs=93.9
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+++.+|||+||++++.+|..|+.+++++++|+|.++ ..++.+....|...+........|+++++||+|
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~----------~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTL----------RESSDELTEEWLEELRELAPDDVPILLVGNKID 122 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEeccc----------chhhhHHHHHHHHHHHHhCCCCceEEEEecccc
Confidence 4779999999999999999999999999999999998 677888877777666654435799999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeecc--CCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTAT--DTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~--d~~ni~~vf~~v~~~Il~~ 351 (359)
++.+.. ....+...+. .. ...+....+... ....... +..+||+ .+.+|..+|......+.+.
T Consensus 123 l~~~~~--~~~~~~~~~~---~~-~~~~~~~~~~~~------~~~~~~~-~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 123 LFDEQS--SSEEILNQLN---RE-VVLLVLAPKAVL------PEVANPA-LLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred cccchh--HHHHHHhhhh---cC-cchhhhHhHHhh------hhhcccc-eeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 988654 2111111000 00 122222222221 1111223 6789999 9999999999999888653
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.60 E-value=3.4e-14 Score=121.27 Aligned_cols=120 Identities=15% Similarity=0.099 Sum_probs=77.8
Q ss_pred EEEeeC-CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEE
Q psy14891 190 TNFRLG-ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFI 268 (359)
Q Consensus 190 ~~~~~~-~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ii 268 (359)
..+.+. +..+++|||+|++++...+..++.+++++|+|+|.++ ....++...+..+ .. ....|++
T Consensus 43 ~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~-----------~~~~~~~~~~~~~-~~--~~~~~~i 108 (164)
T cd04171 43 AYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE-----------GIMPQTREHLEIL-EL--LGIKRGL 108 (164)
T ss_pred EEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCC-----------CccHhHHHHHHHH-HH--hCCCcEE
Confidence 334444 6789999999999998878888999999999999875 1223333333222 11 1224899
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
+++||+|+..+.- .....+.+.+.+... ....+.++++||++++||+++|+.+..
T Consensus 109 lv~NK~Dl~~~~~--------------------~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 109 VVLTKADLVDEDW--------------------LELVEEEIRELLAGT---FLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEECccccCHHH--------------------HHHHHHHHHHHHHhc---CcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 9999999865321 011112222222211 012356788999999999999988753
No 141
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.59 E-value=5.3e-14 Score=125.46 Aligned_cols=106 Identities=21% Similarity=0.242 Sum_probs=69.1
Q ss_pred ceeeEEecCCccc---------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 197 SIVNMVDVGGQRS---------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 197 ~~l~i~D~~Gq~~---------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+|||+|+.. ++..| ..+.+++++++|+|.++ ...... ...+..++..-...+.|+
T Consensus 89 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~----------~~~~~~-~~~~~~~l~~~~~~~~~v 156 (204)
T cd01878 89 REVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASD----------PDYEEQ-IETVEKVLKELGAEDIPM 156 (204)
T ss_pred ceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCC----------CChhhH-HHHHHHHHHHcCcCCCCE
Confidence 3789999999832 33333 24678999999999987 333332 222223333223356899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
++|+||+|+..+.. . . .+.. .....++++||+++.||..+|+.+.+.
T Consensus 157 iiV~NK~Dl~~~~~------------------~--~---~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 157 ILVLNKIDLLDDEE------------------L--E---ERLE----------AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEEEEccccCChHH------------------H--H---HHhh----------cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 99999999865433 0 0 1110 123456899999999999999988764
No 142
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.58 E-value=3.6e-14 Score=123.46 Aligned_cols=112 Identities=15% Similarity=0.170 Sum_probs=77.4
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
+++.+++|||+|++.++..|..++++++++|+|+|.++ ... .+.+..+..... .++|+++++||+
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~~-~~~~~~~~~~~~----~~~~iiiv~NK~ 129 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQ----------GVE-AQTLANFYLALE----NNLEIIPVINKI 129 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCC----------Ccc-HhhHHHHHHHHH----cCCCEEEEEECC
Confidence 35788999999999999999999999999999999987 222 223333333332 367999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
|+..... ....+-+.+.+ .+ ....++.+||++++||+++|+.+.+.+
T Consensus 130 Dl~~~~~---------------------~~~~~~~~~~~-~~-----~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 130 DLPSADP---------------------ERVKQQIEDVL-GL-----DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CCCcCCH---------------------HHHHHHHHHHh-CC-----CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 9853211 11111122211 11 112367899999999999999987654
No 143
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.58 E-value=4.9e-14 Score=121.21 Aligned_cols=123 Identities=20% Similarity=0.172 Sum_probs=79.4
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhh----------hccCCcEEEEEEECCCCccccccCCccc--chHHHHH
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIY----------CFDDVKAVLYVVALSGYDMTLLEDSSVN--RLDESLN 251 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~----------~f~~~~~iifv~dls~yd~~l~ed~~~~--~l~es~~ 251 (359)
|.++....+..+++++++|||+|+.. +..|.. ....++++|+|+|.++ .. ++.+...
T Consensus 34 t~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~----------~~~~~~~~~~~ 102 (168)
T cd01897 34 TKSLFVGHFDYKYLRWQVIDTPGLLD-RPLEERNTIEMQAITALAHLRAAVLFLFDPSE----------TCGYSLEEQLS 102 (168)
T ss_pred ccceeEEEEccCceEEEEEECCCcCC-ccccCCchHHHHHHHHHHhccCcEEEEEeCCc----------ccccchHHHHH
Confidence 33444444455678999999999842 122211 1123689999999987 22 3355556
Q ss_pred HHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeec
Q psy14891 252 LFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTA 331 (359)
Q Consensus 252 ~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA 331 (359)
|+..+... +.+.|+++++||+|+..... .....++.. .....+++|||
T Consensus 103 ~~~~l~~~--~~~~pvilv~NK~Dl~~~~~--------------------~~~~~~~~~----------~~~~~~~~~Sa 150 (168)
T cd01897 103 LFEEIKPL--FKNKPVIVVLNKIDLLTFED--------------------LSEIEEEEE----------LEGEEVLKIST 150 (168)
T ss_pred HHHHHHhh--cCcCCeEEEEEccccCchhh--------------------HHHHHHhhh----------hccCceEEEEe
Confidence 66666432 35789999999999864321 111122211 13456789999
Q ss_pred cCCchHHHHHHHHHHHHH
Q psy14891 332 TDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 332 ~d~~ni~~vf~~v~~~Il 349 (359)
+++.|++++|+.+.+.++
T Consensus 151 ~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 151 LTEEGVDEVKNKACELLL 168 (168)
T ss_pred cccCCHHHHHHHHHHHhC
Confidence 999999999999887653
No 144
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.56 E-value=1.1e-13 Score=116.16 Aligned_cols=116 Identities=22% Similarity=0.200 Sum_probs=79.0
Q ss_pred EEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeE
Q psy14891 191 NFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASF 267 (359)
Q Consensus 191 ~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~i 267 (359)
.+..++ +.+.+||++|+..++..|..+++.+.++++++|++.+ ...+.+.. .+...+.. ....+.|+
T Consensus 42 ~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~---------v~~~~~~~~~~~~~~~~-~~~~~~p~ 111 (161)
T TIGR00231 42 VIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVIL---------VLDVEEILEKQTKEIIH-HAESNVPI 111 (161)
T ss_pred EEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeee---------ehhhhhHhHHHHHHHHH-hcccCCcE
Confidence 344555 7889999999999999999999999999999999872 13444444 33333322 22227899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
++++||+|+....+ .+..... +... ....++.+||+++.++..+|+.+.
T Consensus 112 ivv~nK~D~~~~~~--------------------~~~~~~~----~~~~-----~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 112 ILVGNKIDLRDAKL--------------------KTHVAFL----FAKL-----NGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEEEEcccCCcchh--------------------hHHHHHH----Hhhc-----cCCceEEeecCCCCCHHHHHHHhh
Confidence 99999999865322 0111111 1111 223478899999999999998763
No 145
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.52 E-value=4e-13 Score=115.27 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=77.2
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+..+.+|||+|++.++..|..++..++++++|+|.++.+ ..++...+..+.. .+.|+++++||+|
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-----------~~~~~~~~~~~~~----~~~p~ivv~NK~D 113 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-----------MPQTIEAIKLAKA----ANVPFIVALNKID 113 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-----------cHHHHHHHHHHHH----cCCCEEEEEEcee
Confidence 578999999999999999999999999999999998732 1223333333222 3679999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhc-cCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRN-HNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~-~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+..+.. +....-+. .+.... ....+.+.++.+||++++||.++|+.+...
T Consensus 114 l~~~~~---------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 114 KPNANP---------------------ERVKNELS-ELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred cccccH---------------------HHHHHHHH-HhhccccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 864221 11111111 111100 001234667899999999999999988654
No 146
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.51 E-value=4.1e-13 Score=115.59 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=72.5
Q ss_pred ceeeEEecCCcc----ccccchhhhc---cCCcEEEEEEECCCCccccccCCcc-cchHHHHHHHHHHHhc-cCCCCCeE
Q psy14891 197 SIVNMVDVGGQR----SQRRKWIYCF---DDVKAVLYVVALSGYDMTLLEDSSV-NRLDESLNLFEQVVNN-RYFREASF 267 (359)
Q Consensus 197 ~~l~i~D~~Gq~----~~r~~w~~~f---~~~~~iifv~dls~yd~~l~ed~~~-~~l~es~~~~~~i~~~-~~~~~~~i 267 (359)
..+.+|||+|+. ..+.++..++ ++++++|+|+|.++ . +.+.....|.+.+... +...+.|+
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~p~ 117 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSG----------DDDPVEDYKTIRNELELYNPELLEKPR 117 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCC----------CCCHHHHHHHHHHHHHHhCcccccccc
Confidence 389999999974 2333444444 46999999999998 4 3444434444444332 12357899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
++++||+|+..... ..+....+... .....++.+||+++.+|+++|+.+.+.
T Consensus 118 ivv~NK~Dl~~~~~-------------------~~~~~~~~~~~---------~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 118 IVVLNKIDLLDEEE-------------------LFELLKELLKE---------LWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEEEchhcCCchh-------------------hHHHHHHHHhh---------CCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 99999999854322 11122222221 023567889999999999999988753
No 147
>KOG0393|consensus
Probab=99.51 E-value=7.7e-14 Score=122.04 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=106.2
Q ss_pred cCCCccCccccccccccccceeEEEEeeC-C--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcc
Q psy14891 167 DLKYVPNATDVLRARVRTNGIIETNFRLG-E--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSV 243 (359)
Q Consensus 167 ~~~y~Pt~~Dil~~r~~T~G~~~~~~~~~-~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~ 243 (359)
..+|+||.-|-..+ .+.+. + +.+.+|||+||+.|.++|+..|.++|.++.||++++ .
T Consensus 30 p~~yvPTVFdnys~----------~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~----------p 89 (198)
T KOG0393|consen 30 PEEYVPTVFDNYSA----------NVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVS----------P 89 (198)
T ss_pred cccccCeEEccceE----------EEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCC----------h
Confidence 45799998654422 23332 3 789999999999999999889999999999999999 8
Q ss_pred cchHHHH-HHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCC
Q psy14891 244 NRLDESL-NLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAK 322 (359)
Q Consensus 244 ~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~ 322 (359)
.++++.. +|+-++.. . .+++|+||+|+|.||..+.. ....+ ......+ .+.+++..-.++ -.
T Consensus 90 ~S~~nv~~kW~pEi~~-~-cp~vpiiLVGtk~DLr~d~~--~~~~l---~~~~~~~-Vt~~~g~~lA~~---------ig 152 (198)
T KOG0393|consen 90 ESFENVKSKWIPEIKH-H-CPNVPIILVGTKADLRDDPS--TLEKL---QRQGLEP-VTYEQGLELAKE---------IG 152 (198)
T ss_pred hhHHHHHhhhhHHHHh-h-CCCCCEEEEeehHHhhhCHH--HHHHH---HhccCCc-ccHHHHHHHHHH---------hC
Confidence 8888854 55555543 2 37999999999999975321 11111 1111222 666666655544 12
Q ss_pred ceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 323 VIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 323 ~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
-+-+.++||++..|++++|+......+..
T Consensus 153 a~~y~EcSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 153 AVKYLECSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred cceeeeehhhhhCCcHHHHHHHHHHHhcc
Confidence 35678999999999999999988887753
No 148
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.51 E-value=5.8e-13 Score=116.29 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=84.4
Q ss_pred EeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEe
Q psy14891 192 FRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFL 271 (359)
Q Consensus 192 ~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~ 271 (359)
+...+..+.+||++|+..++..|..++.+++++++|+|.++- . ......++..... .+.|+++++
T Consensus 57 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~-~~~~~~~~~~~~~----~~~~i~iv~ 121 (189)
T cd00881 57 FEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG----------V-QPQTREHLRIARE----GGLPIIVAI 121 (189)
T ss_pred EeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC----------C-cHHHHHHHHHHHH----CCCCeEEEE
Confidence 344567899999999999999999999999999999998861 1 1222333333322 478999999
Q ss_pred eCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhcc--------CCCCceEEEEeeccCCchHHHHHHH
Q psy14891 272 NKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNH--------NSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 272 NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~--------~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
||+|+..+ ...+...+++.+.+..... .......++++||+++.|+..+|+.
T Consensus 122 nK~D~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~ 181 (189)
T cd00881 122 NKIDRVGE--------------------EDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEA 181 (189)
T ss_pred ECCCCcch--------------------hcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHH
Confidence 99998751 1223333444443332211 0124567889999999999999998
Q ss_pred HHHHH
Q psy14891 344 VMDLV 348 (359)
Q Consensus 344 v~~~I 348 (359)
+.+.+
T Consensus 182 l~~~l 186 (189)
T cd00881 182 IVEHL 186 (189)
T ss_pred HHhhC
Confidence 87764
No 149
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.51 E-value=2.2e-13 Score=112.82 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=82.0
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+..+.+||++|+..+...|..++..++++++|+|+++ ...+.....++..........++|+++++||+|
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D 113 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD----------RESFENVKEWLLLILINKEGENIPIILVGNKID 113 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccc
Confidence 4678999999999999999999999999999999998 555555555533444444556899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
+..... ............ ...+.++.+||+++.++..+|+.+.
T Consensus 114 ~~~~~~------------------~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 114 LPEERV------------------VSEEELAEQLAK---------ELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred cccccc------------------hHHHHHHHHHHh---------hcCCcEEEEecCCCCChHHHHHHHh
Confidence 865322 111110111111 2457789999999999999998764
No 150
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.50 E-value=9.4e-13 Score=116.64 Aligned_cols=113 Identities=15% Similarity=0.093 Sum_probs=75.6
Q ss_pred EEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEE
Q psy14891 190 TNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFIL 269 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL 269 (359)
..+..++..+++|||+|++.++..|..|+++++++|+|+|.++ ........++..... .++|+++
T Consensus 58 ~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~-----------~~~~~~~~~~~~~~~----~~~p~ii 122 (194)
T cd01891 58 TAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALE----LGLKPIV 122 (194)
T ss_pred eEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCCEEE
Confidence 3455567899999999999999999999999999999999986 112333334444332 3689999
Q ss_pred EeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccC-CCCceEEEEeeccCCchHH
Q psy14891 270 FLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHN-SAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 270 ~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~-~~~~i~~~~tsA~d~~ni~ 338 (359)
++||+|+..++. . ...+++.+++. .+... ....+.+.++||+++.|+.
T Consensus 123 v~NK~Dl~~~~~--~---------------~~~~~~~~~~~----~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 123 VINKIDRPDARP--E---------------EVVDEVFDLFI----ELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred EEECCCCCCCCH--H---------------HHHHHHHHHHH----HhCCccccCccCEEEeehhcccccc
Confidence 999999864322 0 11223333322 11111 1234567889999998874
No 151
>PRK04213 GTP-binding protein; Provisional
Probab=99.50 E-value=5.6e-13 Score=118.51 Aligned_cols=122 Identities=11% Similarity=0.113 Sum_probs=72.5
Q ss_pred eeeEEecCC-----------ccccccchhhhcc-C---CcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 198 IVNMVDVGG-----------QRSQRRKWIYCFD-D---VKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 198 ~l~i~D~~G-----------q~~~r~~w~~~f~-~---~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.+.+|||+| +++++..|..|+. + ++++++|+|.+++.+....-.....+.....++..+..
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 128 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---- 128 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----
Confidence 588999999 7889999998875 3 56888999987743321100000111122233333222
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCC--ceEEEEeeccCCchHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAK--VIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~--~i~~~~tsA~d~~ni~~v 340 (359)
.++|+++++||+|+...+- +.+.+ +.+.+. +.. ..+ ...++.|||+++ ||.++
T Consensus 129 ~~~p~iiv~NK~Dl~~~~~---------------------~~~~~-~~~~~~-~~~-~~~~~~~~~~~~SA~~g-gi~~l 183 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNRD---------------------EVLDE-IAERLG-LYP-PWRQWQDIIAPISAKKG-GIEEL 183 (201)
T ss_pred cCCCeEEEEECccccCcHH---------------------HHHHH-HHHHhc-CCc-cccccCCcEEEEecccC-CHHHH
Confidence 3689999999999854321 11111 122111 100 001 123678999999 99999
Q ss_pred HHHHHHHH
Q psy14891 341 FHAVMDLV 348 (359)
Q Consensus 341 f~~v~~~I 348 (359)
|+.+.+.+
T Consensus 184 ~~~l~~~~ 191 (201)
T PRK04213 184 KEAIRKRL 191 (201)
T ss_pred HHHHHHhh
Confidence 99998765
No 152
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.50 E-value=9.4e-14 Score=124.18 Aligned_cols=74 Identities=20% Similarity=0.342 Sum_probs=62.9
Q ss_pred CceeeEEecCCccccccchhhhccCC-cEEEEEEECCCCccccccCCcc-cchHHHHHHHHHHHhccC--CCCCeEEEEe
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDV-KAVLYVVALSGYDMTLLEDSSV-NRLDESLNLFEQVVNNRY--FREASFILFL 271 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~-~~iifv~dls~yd~~l~ed~~~-~~l~es~~~~~~i~~~~~--~~~~~iiL~~ 271 (359)
+..+.+||++|+.++|..|..+++++ +++|||+|.++ . +++.++..++..++.... ..++|++|++
T Consensus 47 ~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~----------~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~ 116 (203)
T cd04105 47 GKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSAT----------FQKNLKDVAEFLYDILTDLEKVKNKIPVLIAC 116 (203)
T ss_pred CceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECcc----------chhHHHHHHHHHHHHHHHHhhccCCCCEEEEe
Confidence 46789999999999999999999999 99999999998 4 677888888877765432 2579999999
Q ss_pred eCCCcchh
Q psy14891 272 NKFDLFRE 279 (359)
Q Consensus 272 NK~Dl~~~ 279 (359)
||+|++..
T Consensus 117 NK~Dl~~a 124 (203)
T cd04105 117 NKQDLFTA 124 (203)
T ss_pred cchhhccc
Confidence 99998753
No 153
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.49 E-value=9.8e-14 Score=112.65 Aligned_cols=69 Identities=26% Similarity=0.293 Sum_probs=53.8
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc-CCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR-YFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~-~~~~~~iiL~~NK~D 275 (359)
..+.+||++|++.+...|...+.+++++|+|||+++ ..++....+++..+.+.. ...++|++|++||.|
T Consensus 50 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~----------~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 50 QSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSD----------PESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCG----------HHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred eEEEEEecCccceecccccchhhcCcEEEEEEcCCC----------hHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 448999999999999989888999999999999998 666766644433333221 245699999999998
No 154
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.47 E-value=2e-13 Score=114.36 Aligned_cols=99 Identities=10% Similarity=0.104 Sum_probs=65.6
Q ss_pred eEEecCCcc-----ccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 200 NMVDVGGQR-----SQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 200 ~i~D~~Gq~-----~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.+|||+|+. .++.... .+++++++|+|+|+++ ..++.. ..| .... ..|+++++||+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~----------~~s~~~-~~~-~~~~------~~p~ilv~NK~ 98 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATD----------PESRFP-PGF-ASIF------VKPVIGLVTKI 98 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCC----------CCcCCC-hhH-HHhc------cCCeEEEEEee
Confidence 579999983 3444333 4789999999999998 232222 122 2221 23999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
|+.+. . ...+.+.+++... ....+++|||++++||+++|+.+.
T Consensus 99 Dl~~~-~------------------~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 99 DLAEA-D------------------VDIERAKELLETA---------GAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ccCCc-c------------------cCHHHHHHHHHHc---------CCCcEEEEecCCCCCHHHHHHHHh
Confidence 98642 2 2345556665541 112467899999999999998764
No 155
>KOG4252|consensus
Probab=99.47 E-value=3.2e-14 Score=120.31 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=105.5
Q ss_pred cccccee--EEEEee--CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 182 VRTNGII--ETNFRL--GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 182 ~~T~G~~--~~~~~~--~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
..|+|+. +..+.+ .++.+.+||+|||+.+..+...||+++.+.++||+-+| ..+|+-.+.|.+.+.
T Consensus 50 kktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTD----------r~SFea~~~w~~kv~ 119 (246)
T KOG4252|consen 50 KKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTD----------RYSFEATLEWYNKVQ 119 (246)
T ss_pred ccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEeccc----------HHHHHHHHHHHHHHH
Confidence 4677843 444444 45889999999999999999999999999999999999 899999999999997
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
+. ...+|.+++-||+||.+.-. .+.+++...++..- .-.+-||++..-||
T Consensus 120 ~e--~~~IPtV~vqNKIDlveds~------------------~~~~evE~lak~l~----------~RlyRtSvked~NV 169 (246)
T KOG4252|consen 120 KE--TERIPTVFVQNKIDLVEDSQ------------------MDKGEVEGLAKKLH----------KRLYRTSVKEDFNV 169 (246)
T ss_pred HH--hccCCeEEeeccchhhHhhh------------------cchHHHHHHHHHhh----------hhhhhhhhhhhhhh
Confidence 65 46899999999999988655 55566665555522 22345999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14891 338 QTVFHAVMDLVIKI 351 (359)
Q Consensus 338 ~~vf~~v~~~Il~~ 351 (359)
..+|..+++...+.
T Consensus 170 ~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 156
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.46 E-value=2e-12 Score=123.81 Aligned_cols=118 Identities=15% Similarity=0.204 Sum_probs=79.7
Q ss_pred CCceeeEEecCCccc-------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc-cCCCCCe
Q psy14891 195 GESIVNMVDVGGQRS-------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN-RYFREAS 266 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~-------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~-~~~~~~~ 266 (359)
++.++.+||++|.-. ....|..+++.++++|+|+|+++ .+++++...|..++... +.+.+.|
T Consensus 204 ~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~----------~~s~e~~~~~~~EL~~~~~~L~~kp 273 (335)
T PRK12299 204 DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEA----------VDPVEDYKTIRNELEKYSPELADKP 273 (335)
T ss_pred CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCC----------CCCHHHHHHHHHHHHHhhhhcccCC
Confidence 456799999999732 33455556778999999999997 33444444555555432 3345789
Q ss_pred EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 267 FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 267 iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
++|++||+|+..+.. ...+....++.. ....++++||++++||+++|+.+.+
T Consensus 274 ~IIV~NKiDL~~~~~------------------~~~~~~~~~~~~----------~~~~i~~iSAktg~GI~eL~~~L~~ 325 (335)
T PRK12299 274 RILVLNKIDLLDEEE------------------EREKRAALELAA----------LGGPVFLISAVTGEGLDELLRALWE 325 (335)
T ss_pred eEEEEECcccCCchh------------------HHHHHHHHHHHh----------cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 999999999864332 111222222211 2245678999999999999999988
Q ss_pred HHHH
Q psy14891 347 LVIK 350 (359)
Q Consensus 347 ~Il~ 350 (359)
.+..
T Consensus 326 ~l~~ 329 (335)
T PRK12299 326 LLEE 329 (335)
T ss_pred HHHh
Confidence 7654
No 157
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.45 E-value=1.7e-11 Score=108.03 Aligned_cols=129 Identities=14% Similarity=0.208 Sum_probs=90.6
Q ss_pred ccceeEEEEe--eCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 184 TNGIIETNFR--LGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 184 T~G~~~~~~~--~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
|+......+. ..+..+.++|++|+..+.+........+|++|+|+|..+ .-.....+.+..+..
T Consensus 55 ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~-----------g~~~~~~~~l~~~~~--- 120 (188)
T PF00009_consen 55 TIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDAND-----------GIQPQTEEHLKILRE--- 120 (188)
T ss_dssp SSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTT-----------BSTHHHHHHHHHHHH---
T ss_pred ccccccccccccccccceeecccccccceeecccceecccccceeeeeccc-----------ccccccccccccccc---
Confidence 3444444454 667899999999999998888888999999999999986 222344555555433
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCC-CceEEEEeeccCCchHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSA-KVIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~-~~i~~~~tsA~d~~ni~~v 340 (359)
.+.|+++++||+|+...++ ++..+-+.+.|........ ..+.++++||+.+.||..+
T Consensus 121 -~~~p~ivvlNK~D~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~L 178 (188)
T PF00009_consen 121 -LGIPIIVVLNKMDLIEKEL---------------------EEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDEL 178 (188)
T ss_dssp -TT-SEEEEEETCTSSHHHH---------------------HHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHH
T ss_pred -cccceEEeeeeccchhhhH---------------------HHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHH
Confidence 3678999999999985544 3333444444422222112 3588899999999999999
Q ss_pred HHHHHHHH
Q psy14891 341 FHAVMDLV 348 (359)
Q Consensus 341 f~~v~~~I 348 (359)
++.+.+.+
T Consensus 179 l~~l~~~~ 186 (188)
T PF00009_consen 179 LEALVELL 186 (188)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99887653
No 158
>KOG0077|consensus
Probab=99.43 E-value=1.4e-13 Score=115.23 Aligned_cols=79 Identities=24% Similarity=0.472 Sum_probs=74.7
Q ss_pred EEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEE
Q psy14891 190 TNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFIL 269 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL 269 (359)
..+.+.+++|+.+|.||+..-|+.|..||-.+++++|.+|..| .+|+.|+...++.++.....+++|+++
T Consensus 57 E~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d----------~er~~es~~eld~ll~~e~la~vp~li 126 (193)
T KOG0077|consen 57 EELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYD----------QERFAESKKELDALLSDESLATVPFLI 126 (193)
T ss_pred HHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhh----------HHHhHHHHHHHHHHHhHHHHhcCccee
Confidence 4667889999999999999999999999999999999999999 899999999999999998889999999
Q ss_pred EeeCCCcch
Q psy14891 270 FLNKFDLFR 278 (359)
Q Consensus 270 ~~NK~Dl~~ 278 (359)
.+||+|...
T Consensus 127 lgnKId~p~ 135 (193)
T KOG0077|consen 127 LGNKIDIPY 135 (193)
T ss_pred ecccccCCC
Confidence 999999865
No 159
>KOG3883|consensus
Probab=99.42 E-value=6.5e-12 Score=103.81 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=102.9
Q ss_pred CCccCccccccccccc-cceeEEEEeeCCceeeEEecCCcccc-ccchhhhccCCcEEEEEEECCCCccccccCCcccch
Q psy14891 169 KYVPNATDVLRARVRT-NGIIETNFRLGESIVNMVDVGGQRSQ-RRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRL 246 (359)
Q Consensus 169 ~y~Pt~~Dil~~r~~T-~G~~~~~~~~~~~~l~i~D~~Gq~~~-r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l 246 (359)
+|.||.+||+.....| .|.. -.++++||+|-..+ ..+-.|||.-+|+.++|||..+ .++|
T Consensus 39 e~~pTiEDiY~~svet~rgar--------E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d----------~eSf 100 (198)
T KOG3883|consen 39 ELHPTIEDIYVASVETDRGAR--------EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMD----------PESF 100 (198)
T ss_pred ccccchhhheeEeeecCCChh--------heEEEeecccccCchhhhhHhHhccCceEEEEecCCC----------HHHH
Confidence 5789999988765544 2322 35789999997666 6777899999999999999998 3444
Q ss_pred HHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEE
Q psy14891 247 DESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYP 326 (359)
Q Consensus 247 ~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~ 326 (359)
...-.+-..|-.++.-..+||++++||+|+.+.+- .+.+-|..|++. ..+-.
T Consensus 101 ~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~------------------vd~d~A~~Wa~r----------Ekvkl 152 (198)
T KOG3883|consen 101 QRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE------------------VDMDVAQIWAKR----------EKVKL 152 (198)
T ss_pred HHHHHHHHHHhhccccccccEEEEechhhcccchh------------------cCHHHHHHHHhh----------hheeE
Confidence 43322222333355556899999999999876554 678889999886 55778
Q ss_pred EEeeccCCchHHHHHHHHHHHHHH
Q psy14891 327 HFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 327 ~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
++++|+|....-+-|..+...+.+
T Consensus 153 ~eVta~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 153 WEVTAMDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred EEEEeccchhhhhHHHHHHHhccC
Confidence 899999999999999998877654
No 160
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.42 E-value=4.6e-12 Score=112.02 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=73.1
Q ss_pred CceeeEEecCCccccccchhhhc---cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEee
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCF---DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLN 272 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f---~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~N 272 (359)
+..+.+|||+|+..+ +..++ ..++++++|+|.++. ... .....+. +... .+.|+++++|
T Consensus 67 ~~~~~i~DtpG~~~~---~~~~~~~~~~~d~vi~VvD~~~~----------~~~-~~~~~~~-~~~~---~~~~~iiv~N 128 (192)
T cd01889 67 NLQITLVDCPGHASL---IRTIIGGAQIIDLMLLVVDATKG----------IQT-QTAECLV-IGEI---LCKKLIVVLN 128 (192)
T ss_pred CceEEEEECCCcHHH---HHHHHHHHhhCCEEEEEEECCCC----------ccH-HHHHHHH-HHHH---cCCCEEEEEE
Confidence 578999999999654 44443 457899999998861 111 1111111 1111 2569999999
Q ss_pred CCCcchh-hhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 273 KFDLFRE-KILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 273 K~Dl~~~-k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
|+|+... .. . ...++..+++...|.... ...+.++.+||++++|+.++++.+.+.|.
T Consensus 129 K~Dl~~~~~~--~---------------~~~~~~~~~l~~~~~~~~---~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 129 KIDLIPEEER--E---------------RKIEKMKKKLQKTLEKTR---FKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcccCCHHHH--H---------------HHHHHHHHHHHHHHHhcC---cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 9998632 11 0 123334444444332211 13456788999999999999999988774
No 161
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.41 E-value=7.5e-12 Score=107.26 Aligned_cols=118 Identities=16% Similarity=0.278 Sum_probs=75.7
Q ss_pred EEeeCCceeeEEecCCcccccc-----------chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRR-----------KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~-----------~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~ 259 (359)
.+..++..+.+||++|...... ....++.+++++++|+|.++ ... .....++..+..
T Consensus 44 ~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~-~~~~~~~~~~~~- 111 (174)
T cd01895 44 PFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLILE- 111 (174)
T ss_pred EEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCC----------Ccc-hhHHHHHHHHHh-
Confidence 3444566788999999754311 11235679999999999886 211 222333333322
Q ss_pred cCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHH
Q psy14891 260 RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQT 339 (359)
Q Consensus 260 ~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~ 339 (359)
.+.|+++++||+|+..... ...+.+.+.+.+.+... ....++.+||+++.|+..
T Consensus 112 ---~~~~~iiv~nK~Dl~~~~~------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~ 165 (174)
T cd01895 112 ---EGKALVIVVNKWDLVEKDS------------------KTMKEFKKEIRRKLPFL-----DYAPIVFISALTGQGVDK 165 (174)
T ss_pred ---cCCCEEEEEeccccCCccH------------------HHHHHHHHHHHhhcccc-----cCCceEEEeccCCCCHHH
Confidence 3579999999999865421 22344445555433211 235678899999999999
Q ss_pred HHHHHHH
Q psy14891 340 VFHAVMD 346 (359)
Q Consensus 340 vf~~v~~ 346 (359)
+|+.+..
T Consensus 166 ~~~~l~~ 172 (174)
T cd01895 166 LFDAIDE 172 (174)
T ss_pred HHHHHHH
Confidence 9998865
No 162
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.41 E-value=5.6e-12 Score=125.17 Aligned_cols=122 Identities=14% Similarity=0.231 Sum_probs=83.0
Q ss_pred EEEeeCCceeeEEecCCccccccch-----------hhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 190 TNFRLGESIVNMVDVGGQRSQRRKW-----------IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~~r~~w-----------~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
..+..++..+.+|||+|+++.++.+ ..+++.++++|+|+|.++ .-. .....++..+..
T Consensus 213 ~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~----------~~~-~~~~~~~~~~~~ 281 (429)
T TIGR03594 213 IPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATE----------GIT-EQDLRIAGLILE 281 (429)
T ss_pred EEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCC----------Ccc-HHHHHHHHHHHH
Confidence 3445566789999999998776554 346789999999999986 222 223444444433
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
.+.|+++++||+|+.+.. ...++..+.+...+... ..+.++++||+++.||.
T Consensus 282 ----~~~~iiiv~NK~Dl~~~~-------------------~~~~~~~~~~~~~~~~~-----~~~~vi~~SA~~g~~v~ 333 (429)
T TIGR03594 282 ----AGKALVIVVNKWDLVKDE-------------------KTREEFKKELRRKLPFL-----DFAPIVFISALTGQGVD 333 (429)
T ss_pred ----cCCcEEEEEECcccCCCH-------------------HHHHHHHHHHHHhcccC-----CCCceEEEeCCCCCCHH
Confidence 368999999999986211 12333444444433221 23567899999999999
Q ss_pred HHHHHHHHHHHH
Q psy14891 339 TVFHAVMDLVIK 350 (359)
Q Consensus 339 ~vf~~v~~~Il~ 350 (359)
++|+.+.+....
T Consensus 334 ~l~~~i~~~~~~ 345 (429)
T TIGR03594 334 KLLDAIDEVYEN 345 (429)
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 163
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.41 E-value=8.8e-12 Score=123.74 Aligned_cols=114 Identities=21% Similarity=0.362 Sum_probs=76.8
Q ss_pred eeEEEEeeCCceeeEEecCCccccccch--------hhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 187 IIETNFRLGESIVNMVDVGGQRSQRRKW--------IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 187 ~~~~~~~~~~~~l~i~D~~Gq~~~r~~w--------~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
+.+..+.+++.++++|||+|++.....+ ..++++++++|+|+|.++ ..+..+. |+..+..
T Consensus 241 ~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~----------~~s~~~~--~l~~~~~ 308 (442)
T TIGR00450 241 VVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ----------PLTKDDF--LIIDLNK 308 (442)
T ss_pred EEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCChhHH--HHHHHhh
Confidence 3455667788899999999997655433 357899999999999987 3333332 4444422
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
.++|+++|+||+|+..... ..+... ..+.++.+||++ .||.
T Consensus 309 ----~~~piIlV~NK~Dl~~~~~------------------------~~~~~~----------~~~~~~~vSak~-~gI~ 349 (442)
T TIGR00450 309 ----SKKPFILVLNKIDLKINSL------------------------EFFVSS----------KVLNSSNLSAKQ-LKIK 349 (442)
T ss_pred ----CCCCEEEEEECccCCCcch------------------------hhhhhh----------cCCceEEEEEec-CCHH
Confidence 3679999999999853211 011110 112346789986 6999
Q ss_pred HHHHHHHHHHHHh
Q psy14891 339 TVFHAVMDLVIKI 351 (359)
Q Consensus 339 ~vf~~v~~~Il~~ 351 (359)
++|+.+.+.+.+.
T Consensus 350 ~~~~~L~~~i~~~ 362 (442)
T TIGR00450 350 ALVDLLTQKINAF 362 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877653
No 164
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.40 E-value=1.2e-11 Score=119.48 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=73.2
Q ss_pred eEEEEee-CCceeeEEecCCc---------cccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 188 IETNFRL-GESIVNMVDVGGQ---------RSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 188 ~~~~~~~-~~~~l~i~D~~Gq---------~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
....+.+ ++..+.+|||+|. +.+++.+. ++.+++++|+|+|.++ .....+ ...+..++
T Consensus 227 ~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~----------~~~~~~-~~~~~~~L 294 (351)
T TIGR03156 227 TTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASD----------PDREEQ-IEAVEKVL 294 (351)
T ss_pred EEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCC----------CchHHH-HHHHHHHH
Confidence 3344555 4678999999998 33444433 5789999999999997 333322 23333333
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
..-...+.|+++|+||+|+....- .. .+.. ....++++||+++.||
T Consensus 295 ~~l~~~~~piIlV~NK~Dl~~~~~--------------------v~----~~~~----------~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 295 EELGAEDIPQLLVYNKIDLLDEPR--------------------IE----RLEE----------GYPEAVFVSAKTGEGL 340 (351)
T ss_pred HHhccCCCCEEEEEEeecCCChHh--------------------HH----HHHh----------CCCCEEEEEccCCCCH
Confidence 322234789999999999854211 00 0100 0123578999999999
Q ss_pred HHHHHHHHHH
Q psy14891 338 QTVFHAVMDL 347 (359)
Q Consensus 338 ~~vf~~v~~~ 347 (359)
+.+++.+.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999988653
No 165
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.39 E-value=8.5e-12 Score=111.49 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=75.8
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
..+.+|||+|++.+.+.|.....+++++|+|+|.++ .....++...+..+.. ....|++|++||+|+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~----------~~~~~~t~~~l~~~~~---~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE----------PCPQPQTSEHLAALEI---MGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC----------CCCCcchHHHHHHHHH---cCCCcEEEEEEchhc
Confidence 578999999999998888888899999999999986 1111122222322211 122479999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
..+.- .....+.+.+.+.... ...+.++.+||++++||.++|+.+.+.+
T Consensus 150 ~~~~~--------------------~~~~~~~i~~~~~~~~---~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 150 VKEEQ--------------------ALENYEQIKKFVKGTI---AENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred cCHHH--------------------HHHHHHHHHHHHhccc---cCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 64211 1222233333332211 1235578899999999999999887643
No 166
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.38 E-value=8.5e-12 Score=119.39 Aligned_cols=126 Identities=14% Similarity=0.207 Sum_probs=79.3
Q ss_pred cccceeEEEEeeCC-ceeeEEecCCccc-------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHH
Q psy14891 183 RTNGIIETNFRLGE-SIVNMVDVGGQRS-------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFE 254 (359)
Q Consensus 183 ~T~G~~~~~~~~~~-~~l~i~D~~Gq~~-------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~ 254 (359)
|++|+. .+.+ ..+++||++|+.. ....|..+++.++++|+|+|+++.+. .+.+.+...|.+
T Consensus 194 p~ig~v----~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~-------~~~~e~l~~l~~ 262 (329)
T TIGR02729 194 PNLGVV----RVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDG-------RDPIEDYEIIRN 262 (329)
T ss_pred CEEEEE----EeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccc-------cCHHHHHHHHHH
Confidence 555543 3344 7899999999842 23345555678999999999997311 123333333333
Q ss_pred HHHh-ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccC
Q psy14891 255 QVVN-NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATD 333 (359)
Q Consensus 255 ~i~~-~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d 333 (359)
++.. .+.+.+.|++|++||+|+..+.. .++..+.+.+. ..+.++++||++
T Consensus 263 EL~~~~~~l~~kp~IIV~NK~DL~~~~~--------------------~~~~~~~l~~~---------~~~~vi~iSAkt 313 (329)
T TIGR02729 263 ELKKYSPELAEKPRIVVLNKIDLLDEEE--------------------LAELLKELKKA---------LGKPVFPISALT 313 (329)
T ss_pred HHHHhhhhhccCCEEEEEeCccCCChHH--------------------HHHHHHHHHHH---------cCCcEEEEEccC
Confidence 3322 23346789999999999865322 12222222221 124567899999
Q ss_pred CchHHHHHHHHHHHH
Q psy14891 334 TSNVQTVFHAVMDLV 348 (359)
Q Consensus 334 ~~ni~~vf~~v~~~I 348 (359)
+++|+++|+.+.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999987653
No 167
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=1.1e-11 Score=105.98 Aligned_cols=124 Identities=13% Similarity=0.101 Sum_probs=92.0
Q ss_pred ccccceeEEEEeeCC-ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc
Q psy14891 182 VRTNGIIETNFRLGE-SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR 260 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~-~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~ 260 (359)
..|+++..-.....+ ..+.++||+||+||+-+|.-+++++.++|+++|.+. ...+ ++...++-+-...
T Consensus 52 ~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~----------~~~~-~a~~ii~f~~~~~ 120 (187)
T COG2229 52 PTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR----------PITF-HAEEIIDFLTSRN 120 (187)
T ss_pred ceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCC----------Ccch-HHHHHHHHHhhcc
Confidence 356666666666655 899999999999999999999999999999999998 4444 4555444443221
Q ss_pred CCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHH
Q psy14891 261 YFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 261 ~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~v 340 (359)
.+|++++.||+||+... .+++..+++..- ...+....++|++++..++.
T Consensus 121 ---~ip~vVa~NK~DL~~a~--------------------ppe~i~e~l~~~--------~~~~~vi~~~a~e~~~~~~~ 169 (187)
T COG2229 121 ---PIPVVVAINKQDLFDAL--------------------PPEKIREALKLE--------LLSVPVIEIDATEGEGARDQ 169 (187)
T ss_pred ---CCCEEEEeeccccCCCC--------------------CHHHHHHHHHhc--------cCCCceeeeecccchhHHHH
Confidence 28999999999998742 345555555441 13577889999999999887
Q ss_pred HHHHHHH
Q psy14891 341 FHAVMDL 347 (359)
Q Consensus 341 f~~v~~~ 347 (359)
.+.+...
T Consensus 170 L~~ll~~ 176 (187)
T COG2229 170 LDVLLLK 176 (187)
T ss_pred HHHHHhh
Confidence 7765443
No 168
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=1.3e-11 Score=123.93 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=77.2
Q ss_pred EEEeeCCceeeEEecCCcccc----------ccc-hhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 190 TNFRLGESIVNMVDVGGQRSQ----------RRK-WIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~~----------r~~-w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
..+.+++..+.+|||+|+++. +.. ...++++++++|+|+|.++ ..+.. .+.++..+..
T Consensus 252 ~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~----------~~s~~-~~~~~~~~~~ 320 (472)
T PRK03003 252 SLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASE----------PISEQ-DQRVLSMVIE 320 (472)
T ss_pred EEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC----------CCCHH-HHHHHHHHHH
Confidence 345556778899999997432 222 1235789999999999987 33332 3345555543
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
.+.|++|++||+|+..+.. .....+-+.+.+.. .....+++|||+++.||.
T Consensus 321 ----~~~piIiV~NK~Dl~~~~~--------------------~~~~~~~i~~~l~~-----~~~~~~~~~SAk~g~gv~ 371 (472)
T PRK03003 321 ----AGRALVLAFNKWDLVDEDR--------------------RYYLEREIDRELAQ-----VPWAPRVNISAKTGRAVD 371 (472)
T ss_pred ----cCCCEEEEEECcccCChhH--------------------HHHHHHHHHHhccc-----CCCCCEEEEECCCCCCHH
Confidence 4689999999999864211 01111112221111 122346789999999999
Q ss_pred HHHHHHHHHHHH
Q psy14891 339 TVFHAVMDLVIK 350 (359)
Q Consensus 339 ~vf~~v~~~Il~ 350 (359)
++|..+.+.+-+
T Consensus 372 ~lf~~i~~~~~~ 383 (472)
T PRK03003 372 KLVPALETALES 383 (472)
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 169
>PRK15494 era GTPase Era; Provisional
Probab=99.37 E-value=8.7e-12 Score=119.98 Aligned_cols=113 Identities=14% Similarity=0.161 Sum_probs=70.7
Q ss_pred EEEeeCCceeeEEecCCccc-cccch-------hhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhcc
Q psy14891 190 TNFRLGESIVNMVDVGGQRS-QRRKW-------IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNR 260 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~-~r~~w-------~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~ 260 (359)
..+..++..+.+|||+|+.. +..+- ..++.+++++|||+|.++ ++.+.. .++..+..
T Consensus 93 ~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~------------s~~~~~~~il~~l~~-- 158 (339)
T PRK15494 93 GIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK------------SFDDITHNILDKLRS-- 158 (339)
T ss_pred EEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC------------CCCHHHHHHHHHHHh--
Confidence 34456677899999999843 22211 124689999999999664 122222 23333322
Q ss_pred CCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHH
Q psy14891 261 YFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 261 ~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~v 340 (359)
.+.|.+|++||+|+..+. ..++.+++...+ ....++.+||+++.|+..+
T Consensus 159 --~~~p~IlViNKiDl~~~~---------------------~~~~~~~l~~~~--------~~~~i~~iSAktg~gv~eL 207 (339)
T PRK15494 159 --LNIVPIFLLNKIDIESKY---------------------LNDIKAFLTENH--------PDSLLFPISALSGKNIDGL 207 (339)
T ss_pred --cCCCEEEEEEhhcCcccc---------------------HHHHHHHHHhcC--------CCcEEEEEeccCccCHHHH
Confidence 245778899999985321 233444443311 1234678999999999999
Q ss_pred HHHHHHH
Q psy14891 341 FHAVMDL 347 (359)
Q Consensus 341 f~~v~~~ 347 (359)
|+.+.+.
T Consensus 208 ~~~L~~~ 214 (339)
T PRK15494 208 LEYITSK 214 (339)
T ss_pred HHHHHHh
Confidence 9988764
No 170
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.36 E-value=1.5e-11 Score=126.38 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=76.6
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+|++.|...|..++++++++|+|+|.++ ... ..+...|..... .+.|+++|+||+|+
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~----------g~~-~qt~~~~~~~~~----~~ipiIiViNKiDl 134 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQ----------GIE-AQTLANVYLALE----NDLEIIPVINKIDL 134 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCC----------CCC-HhHHHHHHHHHH----cCCCEEEEEECcCC
Confidence 789999999999999999999999999999999987 222 223333333333 36799999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
.... .+...+-+.+.+ .. ....++++||+++.||..+|+.+.+.+
T Consensus 135 ~~~~---------------------~~~~~~el~~~l-g~-----~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 135 PSAD---------------------PERVKKEIEEVI-GL-----DASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred CccC---------------------HHHHHHHHHHHh-CC-----CcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 5321 111112222221 11 111357899999999999999998765
No 171
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.35 E-value=2.4e-11 Score=110.16 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=84.6
Q ss_pred cccceeEEEEee-CCceeeEEecCCcccccc-----chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHH
Q psy14891 183 RTNGIIETNFRL-GESIVNMVDVGGQRSQRR-----KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQV 256 (359)
Q Consensus 183 ~T~G~~~~~~~~-~~~~l~i~D~~Gq~~~r~-----~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i 256 (359)
+|+.+....+.+ +.+.+++||.|||..+-. .....|+++.++|||+|+.+ ....+.+..+...
T Consensus 33 ~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs-----------~~~~~~l~~~~~~ 101 (232)
T PF04670_consen 33 PTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQS-----------DDYDEDLAYLSDC 101 (232)
T ss_dssp ---SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT------------STCHHHHHHHHHH
T ss_pred CcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEccc-----------ccHHHHHHHHHHH
Confidence 566666666654 458999999999976533 35678999999999999985 2356666666666
Q ss_pred Hhc--cCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhcc-CCCCceEEEEeeccC
Q psy14891 257 VNN--RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNH-NSAKVIYPHFTTATD 333 (359)
Q Consensus 257 ~~~--~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~-~~~~~i~~~~tsA~d 333 (359)
+.. ...+++.+.+|..|+|+..+.- .++....+.++..+... .....+.+|.||--|
T Consensus 102 i~~l~~~sp~~~v~vfiHK~D~l~~~~--------------------r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D 161 (232)
T PF04670_consen 102 IEALRQYSPNIKVFVFIHKMDLLSEDE--------------------REEIFRDIQQRIRDELEDLGIEDITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHSTT-EEEEEEE-CCCS-HHH--------------------HHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS
T ss_pred HHHHHHhCCCCeEEEEEeecccCCHHH--------------------HHHHHHHHHHHHHHHhhhccccceEEEeccCcC
Confidence 543 3346889999999999865432 12233333333222211 111258899999999
Q ss_pred CchHHHHHHHHHHHHH
Q psy14891 334 TSNVQTVFHAVMDLVI 349 (359)
Q Consensus 334 ~~ni~~vf~~v~~~Il 349 (359)
+.+-++|..|...++
T Consensus 162 -~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 162 -ESLYEAWSKIVQKLI 176 (232)
T ss_dssp -THHHHHHHHHHHTTS
T ss_pred -cHHHHHHHHHHHHHc
Confidence 588888888877665
No 172
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.33 E-value=4.4e-11 Score=100.93 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=71.6
Q ss_pred EEeeCCceeeEEecCCcccccc--------chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRR--------KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~--------~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.+...+.++.+|||+|...... ....++..++++++|+|+++ .....+. ..+.. .
T Consensus 43 ~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~~~~~~-~~~~~------~ 105 (157)
T cd04164 43 SIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASR----------GLDEEDL-EILEL------P 105 (157)
T ss_pred EEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCCHHHH-HHHHh------h
Confidence 3444567889999999765432 12246789999999999997 2332222 22222 3
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|+++++||+|+..... . . .......+.++||+++.|++.+++
T Consensus 106 ~~~~vi~v~nK~D~~~~~~------------------~----------~-------~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 106 ADKPIIVVLNKSDLLPDSE------------------L----------L-------SLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred cCCCEEEEEEchhcCCccc------------------c----------c-------cccCCCceEEEECCCCCCHHHHHH
Confidence 5689999999999875433 1 0 001234567899999999999999
Q ss_pred HHHHHH
Q psy14891 343 AVMDLV 348 (359)
Q Consensus 343 ~v~~~I 348 (359)
.+.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 887653
No 173
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.33 E-value=2.8e-11 Score=109.41 Aligned_cols=132 Identities=13% Similarity=0.017 Sum_probs=81.6
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+......+..++.++.+|||+|++.+...|......++++|+|+|.++=+ .+. ......+....+... . ..
T Consensus 63 ~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~---~~~-~~~~~~~~~~~~~~~-~--~~ 135 (219)
T cd01883 63 VTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGE---FEA-GFEKGGQTREHALLA-R--TL 135 (219)
T ss_pred cCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCc---ccc-ccccccchHHHHHHH-H--Hc
Confidence 4555566677788999999999999988888888888999999999998710 000 001111222323222 1 12
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
...|+++++||+|+..... .. ..+++..+.+...+....- ..+.+.++.+||++++||.
T Consensus 136 ~~~~iiivvNK~Dl~~~~~--~~--------------~~~~~i~~~l~~~l~~~~~-~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 136 GVKQLIVAVNKMDDVTVNW--SE--------------ERYDEIKKELSPFLKKVGY-NPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred CCCeEEEEEEccccccccc--cH--------------HHHHHHHHHHHHHHHHcCC-CcCCceEEEeecCcCCCCC
Confidence 3468999999999873100 00 1233334444433332211 1245778999999999986
No 174
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.32 E-value=3.3e-11 Score=120.15 Aligned_cols=111 Identities=19% Similarity=0.243 Sum_probs=76.6
Q ss_pred eeEEEEeeCCceeeEEecCCccccccc--------hhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 187 IIETNFRLGESIVNMVDVGGQRSQRRK--------WIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 187 ~~~~~~~~~~~~l~i~D~~Gq~~~r~~--------w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
+.+..+.+++.++.+|||+|++..... ...++++++++|+|+|.++ ..... ...+|..
T Consensus 253 ~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~----------~~s~~-~~~~l~~--- 318 (449)
T PRK05291 253 VIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASE----------PLTEE-DDEILEE--- 318 (449)
T ss_pred cEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCC----------CCChh-HHHHHHh---
Confidence 444556677888999999998754321 2347899999999999987 33322 2333333
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
..+.|+++|+||+|+..+.. . . . .....++.+||+++.||+
T Consensus 319 ---~~~~piiiV~NK~DL~~~~~------------------~--~-------~---------~~~~~~i~iSAktg~GI~ 359 (449)
T PRK05291 319 ---LKDKPVIVVLNKADLTGEID------------------L--E-------E---------ENGKPVIRISAKTGEGID 359 (449)
T ss_pred ---cCCCCcEEEEEhhhccccch------------------h--h-------h---------ccCCceEEEEeeCCCCHH
Confidence 35689999999999864322 0 0 0 012345779999999999
Q ss_pred HHHHHHHHHHHH
Q psy14891 339 TVFHAVMDLVIK 350 (359)
Q Consensus 339 ~vf~~v~~~Il~ 350 (359)
.+++.+.+.+..
T Consensus 360 ~L~~~L~~~l~~ 371 (449)
T PRK05291 360 ELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHhh
Confidence 999999887643
No 175
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.31 E-value=1.7e-10 Score=105.52 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=63.2
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+......+..++.++.+|||+|+..+...|..+++.++++|+|+|.++ . -......+|..+..
T Consensus 50 ~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~----------g-~~~~~~~~~~~~~~---- 114 (237)
T cd04168 50 ITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVE----------G-VQAQTRILWRLLRK---- 114 (237)
T ss_pred CceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCC----------C-CCHHHHHHHHHHHH----
Confidence 45555666777888999999999999999999999999999999999986 1 12234455554432
Q ss_pred CCCeEEEEeeCCCcch
Q psy14891 263 REASFILFLNKFDLFR 278 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~ 278 (359)
.+.|+++|+||+|+..
T Consensus 115 ~~~P~iivvNK~D~~~ 130 (237)
T cd04168 115 LNIPTIIFVNKIDRAG 130 (237)
T ss_pred cCCCEEEEEECccccC
Confidence 3689999999999864
No 176
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.30 E-value=3.6e-11 Score=120.80 Aligned_cols=114 Identities=21% Similarity=0.184 Sum_probs=75.4
Q ss_pred EEEeeCCceeeEEecCCccc--------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 190 TNFRLGESIVNMVDVGGQRS--------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~--------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
..+.+.+..+.+|||+|++. ++..+..++++++++|||+|.++ ..... ...+..++..
T Consensus 79 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~----------~~s~~--~~~i~~~l~~-- 144 (472)
T PRK03003 79 YDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATV----------GATAT--DEAVARVLRR-- 144 (472)
T ss_pred EEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC----------CCCHH--HHHHHHHHHH--
Confidence 34455677899999999873 45567788999999999999997 22111 1222222221
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
.++|++||+||+|+..... + ...+.. +. .. ..++|||+++.||.++|
T Consensus 145 -~~~piilV~NK~Dl~~~~~---------------------~-~~~~~~-----~g----~~-~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 145 -SGKPVILAANKVDDERGEA---------------------D-AAALWS-----LG----LG-EPHPVSALHGRGVGDLL 191 (472)
T ss_pred -cCCCEEEEEECccCCccch---------------------h-hHHHHh-----cC----CC-CeEEEEcCCCCCcHHHH
Confidence 4789999999999853111 1 111111 10 11 12579999999999999
Q ss_pred HHHHHHHHH
Q psy14891 342 HAVMDLVIK 350 (359)
Q Consensus 342 ~~v~~~Il~ 350 (359)
+.+.+.+..
T Consensus 192 ~~i~~~l~~ 200 (472)
T PRK03003 192 DAVLAALPE 200 (472)
T ss_pred HHHHhhccc
Confidence 999887754
No 177
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.30 E-value=6e-11 Score=121.39 Aligned_cols=111 Identities=11% Similarity=0.103 Sum_probs=76.7
Q ss_pred eeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcc
Q psy14891 198 IVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLF 277 (359)
Q Consensus 198 ~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~ 277 (359)
.+.+|||+|++.|..+|..++..+|++|+|+|.++ ..+..+.+.+.... ..++|+++++||+|+.
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~d-----------gv~~qT~e~i~~~~----~~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADD-----------GVMPQTIEAISHAK----AANVPIIVAINKIDKP 200 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCC-----------CCCHhHHHHHHHHH----HcCCCEEEEEECcccc
Confidence 78999999999999999999999999999999876 22334444443321 2468999999999985
Q ss_pred hhhhhhcCCccccccccccCCCCCHHHHHHHHHHH-HhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 278 REKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHK-FALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 278 ~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~-f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
.. +.+.+.+++... +.. ..-...+.++.+||++++||.++|+.+..
T Consensus 201 ~~---------------------~~e~v~~~L~~~g~~~--~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 201 EA---------------------NPDRVKQELSEYGLVP--EDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred cC---------------------CHHHHHHHHHHhhhhH--HhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 31 223333333321 000 00012356778999999999999998753
No 178
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.30 E-value=4.1e-11 Score=102.83 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=69.6
Q ss_pred EEecCCccccccchhh----hccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 201 MVDVGGQRSQRRKWIY----CFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 201 i~D~~Gq~~~r~~w~~----~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+|||+|+...+..|.. .+++++++|+|+|.++- .+... .++..+ ..+.|+++++||+|+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~----------~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl 103 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDP----------ESRLP--AGLLDI-----GVSKRQIAVISKTDM 103 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCc----------ccccC--HHHHhc-----cCCCCeEEEEEcccc
Confidence 6999998544444433 36899999999999972 11111 122222 135789999999997
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
... +.+.+.+++.+.. -...+++|||++++||.++|+.+.+.+-+
T Consensus 104 ~~~---------------------~~~~~~~~~~~~~--------~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 104 PDA---------------------DVAATRKLLLETG--------FEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred Ccc---------------------cHHHHHHHHHHcC--------CCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 431 2344555555411 11467889999999999999999877654
No 179
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.30 E-value=1.5e-11 Score=122.07 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=77.1
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+.+....+..++..+.+||++|++.+.+....++.+++++|+|+|.++-+. + ........+ .++.. .
T Consensus 71 ~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~---~-----~~~~t~~~~-~~~~~--~ 139 (426)
T TIGR00483 71 VTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF---E-----VQPQTREHA-FLART--L 139 (426)
T ss_pred ceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc---c-----cCCchHHHH-HHHHH--c
Confidence 34555556677788999999999999886666666789999999999987110 0 011111111 12221 2
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
...|+++++||+|+....- . .+. ...+++.++++. .. -....+.++.+||+++.||.+.+
T Consensus 140 ~~~~iIVviNK~Dl~~~~~--~--~~~----------~~~~ei~~~~~~----~g-~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 140 GINQLIVAINKMDSVNYDE--E--EFE----------AIKKEVSNLIKK----VG-YNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred CCCeEEEEEEChhccCccH--H--HHH----------HHHHHHHHHHHH----cC-CCcccceEEEeeccccccccccc
Confidence 2358999999999853110 0 000 012233333332 11 11234678899999999998754
No 180
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.28 E-value=9.2e-11 Score=117.00 Aligned_cols=128 Identities=14% Similarity=0.173 Sum_probs=76.8
Q ss_pred EEeeCCceeeEEecCCccc----cc---cchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc----
Q psy14891 191 NFRLGESIVNMVDVGGQRS----QR---RKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN---- 259 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~----~r---~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~---- 259 (359)
.+.+++..|.+|||+|... .+ ..+..+++.++++|+|+|+++.+. .......+......+......
T Consensus 200 vv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~---~rdp~~d~~~i~~EL~~y~~~l~~~ 276 (500)
T PRK12296 200 VVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEP---GRDPLSDIDALEAELAAYAPALDGD 276 (500)
T ss_pred EEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCccccc---ccCchhhHHHHHHHHHHhhhccccc
Confidence 4455678899999999632 11 123335688999999999986210 000111222222233322211
Q ss_pred ---cCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCch
Q psy14891 260 ---RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSN 336 (359)
Q Consensus 260 ---~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~n 336 (359)
..+.+.|++|++||+|+.+.+- ..+.+...+.. +.+.++.+||+++++
T Consensus 277 ~~~~~l~~kP~IVVlNKiDL~da~e-----------------------l~e~l~~~l~~------~g~~Vf~ISA~tgeG 327 (500)
T PRK12296 277 LGLGDLAERPRLVVLNKIDVPDARE-----------------------LAEFVRPELEA------RGWPVFEVSAASREG 327 (500)
T ss_pred chhhhhcCCCEEEEEECccchhhHH-----------------------HHHHHHHHHHH------cCCeEEEEECCCCCC
Confidence 0245789999999999864321 11122222211 235678899999999
Q ss_pred HHHHHHHHHHHHHH
Q psy14891 337 VQTVFHAVMDLVIK 350 (359)
Q Consensus 337 i~~vf~~v~~~Il~ 350 (359)
|++++..+.+.+-.
T Consensus 328 LdEL~~~L~ell~~ 341 (500)
T PRK12296 328 LRELSFALAELVEE 341 (500)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
No 181
>KOG1673|consensus
Probab=99.27 E-value=4.9e-11 Score=98.87 Aligned_cols=136 Identities=19% Similarity=0.264 Sum_probs=98.3
Q ss_pred cccccccee--EEEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHH
Q psy14891 180 ARVRTNGII--ETNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQ 255 (359)
Q Consensus 180 ~r~~T~G~~--~~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~ 255 (359)
.+..|.|++ ..++.+++ +.|.|||+||||+++.+.+.-..++.+|+|++|++. ...+....+|+.+
T Consensus 48 ~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~----------r~TLnSi~~WY~Q 117 (205)
T KOG1673|consen 48 EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTR----------RSTLNSIKEWYRQ 117 (205)
T ss_pred HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCc----------hHHHHHHHHHHHH
Confidence 345688855 45666665 889999999999999999988899999999999998 6677777777777
Q ss_pred HHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc
Q psy14891 256 VVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS 335 (359)
Q Consensus 256 i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ 335 (359)
.-.. ...+--||+|+|.|+|-. + =|++.. .-...|.+|.+.. +-..+|+||.-..
T Consensus 118 Ar~~--NktAiPilvGTKyD~fi~-l----------p~e~Q~--~I~~qar~YAk~m----------nAsL~F~Sts~sI 172 (205)
T KOG1673|consen 118 ARGL--NKTAIPILVGTKYDLFID-L----------PPELQE--TISRQARKYAKVM----------NASLFFCSTSHSI 172 (205)
T ss_pred Hhcc--CCccceEEeccchHhhhc-C----------CHHHHH--HHHHHHHHHHHHh----------CCcEEEeeccccc
Confidence 6432 223334678999998742 2 111111 1123466776652 2345789999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy14891 336 NVQTVFHAVMDLVIK 350 (359)
Q Consensus 336 ni~~vf~~v~~~Il~ 350 (359)
||+.+|.-+...+++
T Consensus 173 Nv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 173 NVQKIFKIVLAKLFN 187 (205)
T ss_pred cHHHHHHHHHHHHhC
Confidence 999999998888764
No 182
>PRK11058 GTPase HflX; Provisional
Probab=99.26 E-value=2.3e-10 Score=113.12 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=69.9
Q ss_pred eeeEEecCCcccc--ccch------hhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEE
Q psy14891 198 IVNMVDVGGQRSQ--RRKW------IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFIL 269 (359)
Q Consensus 198 ~l~i~D~~Gq~~~--r~~w------~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL 269 (359)
.+.+|||+|..+. ...| ...+++++++|+|+|.++ .. ..+.+..+..++..-...+.|+++
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~----------~~-~~e~l~~v~~iL~el~~~~~pvIi 314 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAAD----------VR-VQENIEAVNTVLEEIDAHEIPTLL 314 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCC----------cc-HHHHHHHHHHHHHHhccCCCCEEE
Confidence 7789999998432 2233 334689999999999997 33 233333333333322224689999
Q ss_pred EeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 270 FLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 270 ~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
++||+|+..... ...+ . . .. ... +++++||++++||..+|+.+.+.+.
T Consensus 315 V~NKiDL~~~~~------------------~~~~-~-----~---~~----~~~-~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 315 VMNKIDMLDDFE------------------PRID-R-----D---EE----NKP-IRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred EEEcccCCCchh------------------HHHH-H-----H---hc----CCC-ceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 999999854211 0000 0 0 00 011 1367999999999999999998875
Q ss_pred H
Q psy14891 350 K 350 (359)
Q Consensus 350 ~ 350 (359)
.
T Consensus 363 ~ 363 (426)
T PRK11058 363 G 363 (426)
T ss_pred h
Confidence 3
No 183
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.26 E-value=1.5e-10 Score=119.14 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=77.7
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
++.+++|||+|+..|...|..+++.++++|+|+|.++ ... ......|..... .+.|+++|+||+|
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~----------gv~-~qt~~~~~~~~~----~~lpiIvViNKiD 137 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ----------GVE-AQTLANVYLALE----NDLEIIPVLNKID 137 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCC----------CCC-HHHHHHHHHHHH----CCCCEEEEEECCC
Confidence 4789999999999999999999999999999999987 111 223333333332 3679999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
+..... +...+-+.+.+ .+ ....++.+||+++.||..+++.+.+.+-
T Consensus 138 l~~a~~---------------------~~v~~ei~~~l-g~-----~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 138 LPAADP---------------------ERVKQEIEDVI-GI-----DASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CCcccH---------------------HHHHHHHHHHh-CC-----CcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 854221 22222222221 11 1112578999999999999999987654
No 184
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.24 E-value=1.2e-10 Score=119.38 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=93.7
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+......+.+++.++.+|||+|+..|...+..+++.++++|+|+|.++ ..+..+..+|..+..
T Consensus 50 iTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-----------G~~~qT~~~l~~a~~---- 114 (594)
T TIGR01394 50 ITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-----------GPMPQTRFVLKKALE---- 114 (594)
T ss_pred ccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-----------CCcHHHHHHHHHHHH----
Confidence 45555556778889999999999999999999999999999999999886 234556666776654
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCC-CCceEEEEeeccCCc------
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNS-AKVIYPHFTTATDTS------ 335 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~-~~~i~~~~tsA~d~~------ 335 (359)
.++|+++|+||+|+..++. +++.+-+.+.|..+.... ...+.+.++||+++.
T Consensus 115 ~~ip~IVviNKiD~~~a~~---------------------~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~ 173 (594)
T TIGR01394 115 LGLKPIVVINKIDRPSARP---------------------DEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLD 173 (594)
T ss_pred CCCCEEEEEECCCCCCcCH---------------------HHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCc
Confidence 3578999999999864322 233333334443332211 234567889999985
Q ss_pred ----hHHHHHHHHHHHH
Q psy14891 336 ----NVQTVFHAVMDLV 348 (359)
Q Consensus 336 ----ni~~vf~~v~~~I 348 (359)
+|..+|+.+.+.+
T Consensus 174 ~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 174 DPSDNMAPLFDAIVRHV 190 (594)
T ss_pred ccccCHHHHHHHHHHhC
Confidence 7999998887765
No 185
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.24 E-value=1.4e-10 Score=121.77 Aligned_cols=118 Identities=11% Similarity=0.071 Sum_probs=79.9
Q ss_pred EEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEE
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILF 270 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~ 270 (359)
.+.+++..+.+|||+|++.|..+|..++..+|++|+|+|.++ ..+..+...+.... ..++|+|++
T Consensus 331 ~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd-----------Gv~~qT~e~i~~a~----~~~vPiIVv 395 (787)
T PRK05306 331 QVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD-----------GVMPQTIEAINHAK----AAGVPIIVA 395 (787)
T ss_pred EEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC-----------CCCHhHHHHHHHHH----hcCCcEEEE
Confidence 345556789999999999999999999999999999999886 23344444443322 246899999
Q ss_pred eeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhcc-CCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 271 LNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNH-NSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 271 ~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~-~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
+||+|+..... +.+..-+.+ + .... .-...+.++.+||+++.||..+|+.+..
T Consensus 396 iNKiDl~~a~~---------------------e~V~~eL~~-~-~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 396 INKIDKPGANP---------------------DRVKQELSE-Y-GLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EECccccccCH---------------------HHHHHHHHH-h-cccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 99999854211 111111111 0 0000 0012366788999999999999998764
No 186
>PRK10218 GTP-binding protein; Provisional
Probab=99.24 E-value=2.1e-10 Score=117.61 Aligned_cols=126 Identities=16% Similarity=0.141 Sum_probs=88.8
Q ss_pred eeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe
Q psy14891 187 IIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS 266 (359)
Q Consensus 187 ~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ 266 (359)
.....+..++.++.+|||+|+..|...|..+++.++++|+|+|.++ ........+|..... .+.|
T Consensus 58 ~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~-----------G~~~qt~~~l~~a~~----~gip 122 (607)
T PRK10218 58 AKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFD-----------GPMPQTRFVTKKAFA----YGLK 122 (607)
T ss_pred EEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEeccc-----------CccHHHHHHHHHHHH----cCCC
Confidence 3445666788999999999999999999999999999999999886 223344444554433 3678
Q ss_pred EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCC-CCceEEEEeeccCCc----------
Q psy14891 267 FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNS-AKVIYPHFTTATDTS---------- 335 (359)
Q Consensus 267 iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~-~~~i~~~~tsA~d~~---------- 335 (359)
+++|.||+|+...+. +++.+-+.+.|..+.... ...+.+.++||+++.
T Consensus 123 ~IVviNKiD~~~a~~---------------------~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~ 181 (607)
T PRK10218 123 PIVVINKVDRPGARP---------------------DWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAE 181 (607)
T ss_pred EEEEEECcCCCCCch---------------------hHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCcccccc
Confidence 899999999864322 333344444444332211 234667889999998
Q ss_pred hHHHHHHHHHHHH
Q psy14891 336 NVQTVFHAVMDLV 348 (359)
Q Consensus 336 ni~~vf~~v~~~I 348 (359)
++..+|+++.+.+
T Consensus 182 ~i~~Lld~Ii~~i 194 (607)
T PRK10218 182 DMTPLYQAIVDHV 194 (607)
T ss_pred chHHHHHHHHHhC
Confidence 4788888776654
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.24 E-value=2.9e-10 Score=119.69 Aligned_cols=121 Identities=13% Similarity=0.119 Sum_probs=78.4
Q ss_pred EEEeeCCceeeEEecCCccc-cccch----------hhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 190 TNFRLGESIVNMVDVGGQRS-QRRKW----------IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~-~r~~w----------~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
..+.+++..+.+|||+|+++ .+..| ..+++.++++|+|+|.++ ..+. ..+.++..+..
T Consensus 491 ~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~----------~~s~-~~~~i~~~~~~ 559 (712)
T PRK09518 491 EIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQ----------PISE-QDLKVMSMAVD 559 (712)
T ss_pred eEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCC----------CCCH-HHHHHHHHHHH
Confidence 34556677888999999753 23333 234688999999999987 2222 23455555543
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
.++|++||+||+|+..+.. .+...+.+...|... .....+++||+++.||.
T Consensus 560 ----~~~piIiV~NK~DL~~~~~--------------------~~~~~~~~~~~l~~~-----~~~~ii~iSAktg~gv~ 610 (712)
T PRK09518 560 ----AGRALVLVFNKWDLMDEFR--------------------RQRLERLWKTEFDRV-----TWARRVNLSAKTGWHTN 610 (712)
T ss_pred ----cCCCEEEEEEchhcCChhH--------------------HHHHHHHHHHhccCC-----CCCCEEEEECCCCCCHH
Confidence 3689999999999864211 112222222222111 12345789999999999
Q ss_pred HHHHHHHHHHHH
Q psy14891 339 TVFHAVMDLVIK 350 (359)
Q Consensus 339 ~vf~~v~~~Il~ 350 (359)
++|+.+.+..-+
T Consensus 611 ~L~~~i~~~~~~ 622 (712)
T PRK09518 611 RLAPAMQEALES 622 (712)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.24 E-value=2.3e-10 Score=117.39 Aligned_cols=128 Identities=15% Similarity=0.070 Sum_probs=84.4
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+.+....+..++..+.+||++|++.|.+.+..++.+++++|+|+|.++ ..+..+.+.+.. +.. .
T Consensus 37 Tid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~-----------G~~~qT~ehl~i-l~~---l 101 (581)
T TIGR00475 37 TIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE-----------GVMTQTGEHLAV-LDL---L 101 (581)
T ss_pred eEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-----------CCcHHHHHHHHH-HHH---c
Confidence 3334444566667889999999999999999999999999999999986 122333333322 221 2
Q ss_pred CCe-EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 264 EAS-FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 264 ~~~-iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
++| +++++||+|+..+... . ...+++.+++... .. ...+.++.+||++++||.+++.
T Consensus 102 gi~~iIVVlNK~Dlv~~~~~-~---------------~~~~ei~~~l~~~----~~--~~~~~ii~vSA~tG~GI~eL~~ 159 (581)
T TIGR00475 102 GIPHTIVVITKADRVNEEEI-K---------------RTEMFMKQILNSY----IF--LKNAKIFKTSAKTGQGIGELKK 159 (581)
T ss_pred CCCeEEEEEECCCCCCHHHH-H---------------HHHHHHHHHHHHh----CC--CCCCcEEEEeCCCCCCchhHHH
Confidence 566 9999999998643210 0 0112233333221 00 1135678899999999999998
Q ss_pred HHHHHH
Q psy14891 343 AVMDLV 348 (359)
Q Consensus 343 ~v~~~I 348 (359)
.+.+.+
T Consensus 160 ~L~~l~ 165 (581)
T TIGR00475 160 ELKNLL 165 (581)
T ss_pred HHHHHH
Confidence 876654
No 189
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.23 E-value=1.8e-10 Score=119.80 Aligned_cols=115 Identities=10% Similarity=0.080 Sum_probs=77.7
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+..+.+|||+|++.|..+|..++..++++|+|+|.++- ....+.+.+..+. ..++|+++++||+|
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG-----------v~~QT~E~I~~~k----~~~iPiIVViNKiD 358 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG-----------VKPQTIEAINYIQ----AANVPIIVAINKID 358 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC-----------CChhhHHHHHHHH----hcCceEEEEEECCC
Confidence 47899999999999999999999999999999998761 1223333333332 24689999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+..... +.+.+.+... ..+.......+.++.+||+++.||..+|+.+...
T Consensus 359 l~~~~~---------------------e~v~~eL~~~-~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 359 KANANT---------------------ERIKQQLAKY-NLIPEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred ccccCH---------------------HHHHHHHHHh-ccchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 864211 2222222110 0000000123667899999999999999987654
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.22 E-value=4.2e-10 Score=112.06 Aligned_cols=119 Identities=15% Similarity=0.244 Sum_probs=79.4
Q ss_pred EEeeCCceeeEEecCCccccccch-----------hhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRRKW-----------IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~~w-----------~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~ 259 (359)
.+..++..+.+|||+|.++....+ ..+++.++++|+|+|.++ ... .....++..+..
T Consensus 215 ~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~----------~~~-~~~~~i~~~~~~- 282 (435)
T PRK00093 215 PFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATE----------GIT-EQDLRIAGLALE- 282 (435)
T ss_pred EEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC----------CCC-HHHHHHHHHHHH-
Confidence 344567788999999976544332 246788999999999986 222 223344444433
Q ss_pred cCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHH
Q psy14891 260 RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQT 339 (359)
Q Consensus 260 ~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~ 339 (359)
.+.|+++++||+|+..+.. .++..+.+...+... ..+.++++||+++.||.+
T Consensus 283 ---~~~~~ivv~NK~Dl~~~~~--------------------~~~~~~~~~~~l~~~-----~~~~i~~~SA~~~~gv~~ 334 (435)
T PRK00093 283 ---AGRALVIVVNKWDLVDEKT--------------------MEEFKKELRRRLPFL-----DYAPIVFISALTGQGVDK 334 (435)
T ss_pred ---cCCcEEEEEECccCCCHHH--------------------HHHHHHHHHHhcccc-----cCCCEEEEeCCCCCCHHH
Confidence 3579999999999874321 223334444433221 335688999999999999
Q ss_pred HHHHHHHHHH
Q psy14891 340 VFHAVMDLVI 349 (359)
Q Consensus 340 vf~~v~~~Il 349 (359)
+|+.+.+...
T Consensus 335 l~~~i~~~~~ 344 (435)
T PRK00093 335 LLEAIDEAYE 344 (435)
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 191
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.21 E-value=2.3e-10 Score=102.63 Aligned_cols=121 Identities=14% Similarity=0.023 Sum_probs=72.8
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+......+..++.++.+|||+|++.+...+...++.++++|+|+|.++ . ........+. ++.. ..
T Consensus 64 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~----------~-~~~~~~~~~~-~~~~--~~ 129 (208)
T cd04166 64 TIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARK----------G-VLEQTRRHSY-ILSL--LG 129 (208)
T ss_pred CeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCC----------C-ccHhHHHHHH-HHHH--cC
Confidence 4444445666778899999999999887777888899999999999886 1 1112222222 2221 12
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHH
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQT 339 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~ 339 (359)
..++++++||+|+....- ...+....-+...+..+. ...+.++.+||+++.||.+
T Consensus 130 ~~~iIvviNK~D~~~~~~------------------~~~~~i~~~~~~~~~~~~---~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 130 IRHVVVAVNKMDLVDYSE------------------EVFEEIVADYLAFAAKLG---IEDITFIPISALDGDNVVS 184 (208)
T ss_pred CCcEEEEEEchhcccCCH------------------HHHHHHHHHHHHHHHHcC---CCCceEEEEeCCCCCCCcc
Confidence 245788999999853111 011122222222211111 1234567899999999874
No 192
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.20 E-value=6.9e-10 Score=97.90 Aligned_cols=111 Identities=9% Similarity=0.058 Sum_probs=66.5
Q ss_pred ceeeEEecCCc----------cccccchhhhccCC---cEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 197 SIVNMVDVGGQ----------RSQRRKWIYCFDDV---KAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 197 ~~l~i~D~~Gq----------~~~r~~w~~~f~~~---~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
..+.+|||+|. +.++.....|++.+ +++++|+|.+. .-. +....+...+.. .
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~--~~~~~i~~~l~~---~ 134 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRH----------PLK--ELDLQMIEWLKE---Y 134 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCC----------CCC--HHHHHHHHHHHH---c
Confidence 57899999994 34444555666644 67888888765 111 111112222221 3
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
+.|+++++||+|+..... .+...+.+...+.. ....++.|||+|+.|++++|+.
T Consensus 135 ~~~~iiv~nK~Dl~~~~~--------------------~~~~~~~i~~~l~~------~~~~~~~~Sa~~~~gi~~l~~~ 188 (196)
T PRK00454 135 GIPVLIVLTKADKLKKGE--------------------RKKQLKKVRKALKF------GDDEVILFSSLKKQGIDELRAA 188 (196)
T ss_pred CCcEEEEEECcccCCHHH--------------------HHHHHHHHHHHHHh------cCCceEEEEcCCCCCHHHHHHH
Confidence 678999999999864321 11222223322211 1234568999999999999998
Q ss_pred HHHHH
Q psy14891 344 VMDLV 348 (359)
Q Consensus 344 v~~~I 348 (359)
+.+.+
T Consensus 189 i~~~~ 193 (196)
T PRK00454 189 IAKWL 193 (196)
T ss_pred HHHHh
Confidence 87543
No 193
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.20 E-value=6.9e-10 Score=109.26 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=73.3
Q ss_pred CceeeEEecCCccc----c---ccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh-ccCCCCCeE
Q psy14891 196 ESIVNMVDVGGQRS----Q---RRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN-NRYFREASF 267 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~----~---r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~-~~~~~~~~i 267 (359)
+.++.+||++|... . ...|..+.+.++++|+|+|+++.+ ..+.+.+...|.+++.. .+.+.+.|+
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~-------~~dp~e~~~~i~~EL~~y~~~L~~kP~ 277 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSE-------GRDPIEDYEKINKELKLYNPRLLERPQ 277 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccc-------cCChHHHHHHHHHHHhhhchhccCCcE
Confidence 57899999999742 1 223334456799999999998721 11233333333333322 233467899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+|++||+|+... .+...++... + ...++.+||+++++|+++++.+.+.
T Consensus 278 IVV~NK~DL~~~----------------------~e~l~~l~~~-l---------~~~i~~iSA~tgeGI~eL~~~L~~~ 325 (424)
T PRK12297 278 IVVANKMDLPEA----------------------EENLEEFKEK-L---------GPKVFPISALTGQGLDELLYAVAEL 325 (424)
T ss_pred EEEEeCCCCcCC----------------------HHHHHHHHHH-h---------CCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999997321 1122222221 1 1346789999999999999999877
Q ss_pred HHH
Q psy14891 348 VIK 350 (359)
Q Consensus 348 Il~ 350 (359)
+..
T Consensus 326 l~~ 328 (424)
T PRK12297 326 LEE 328 (424)
T ss_pred HHh
Confidence 644
No 194
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.20 E-value=3.6e-10 Score=105.48 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=68.1
Q ss_pred CCceeeEEecCCcccccc--------chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe
Q psy14891 195 GESIVNMVDVGGQRSQRR--------KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS 266 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~--------~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ 266 (359)
++..+.+|||+|....+. .+..+++++++++||+|.++ ..+.. ..+...+.. .+.|
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~----------~~~~~---~~i~~~l~~---~~~p 109 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQ----------WNGDG---EFVLTKLQN---LKRP 109 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----------CCchH---HHHHHHHHh---cCCC
Confidence 345788999999854322 23456789999999999987 22222 222222222 3679
Q ss_pred EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 267 FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 267 iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
+++++||+|+..... ..+....+... . ..-.++.+||+++.||.++++.+.+
T Consensus 110 ~ilV~NK~Dl~~~~~-------------------~~~~~~~~~~~-----~----~~~~v~~iSA~~g~gi~~L~~~l~~ 161 (270)
T TIGR00436 110 VVLTRNKLDNKFKDK-------------------LLPLIDKYAIL-----E----DFKDIVPISALTGDNTSFLAAFIEV 161 (270)
T ss_pred EEEEEECeeCCCHHH-------------------HHHHHHHHHhh-----c----CCCceEEEecCCCCCHHHHHHHHHH
Confidence 999999999853211 01111122111 0 0014578999999999999988876
Q ss_pred HH
Q psy14891 347 LV 348 (359)
Q Consensus 347 ~I 348 (359)
.+
T Consensus 162 ~l 163 (270)
T TIGR00436 162 HL 163 (270)
T ss_pred hC
Confidence 43
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.19 E-value=2.9e-10 Score=112.90 Aligned_cols=129 Identities=15% Similarity=0.075 Sum_probs=77.3
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
..|+.+....+..++..+.+|||+|++.+.+........++++|+|+|.++- . .........+.. +..
T Consensus 69 G~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~------~---~~~~~~~~~~~~-~~~-- 136 (425)
T PRK12317 69 GVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA------G---GVMPQTREHVFL-ART-- 136 (425)
T ss_pred CccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC------C---CCCcchHHHHHH-HHH--
Confidence 3566666777888889999999999987755444556789999999998851 0 001111222222 221
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
....|+++++||+|+..... ..++...+.+.+.+....- ....+.++.+||++++||.+.+
T Consensus 137 ~~~~~iivviNK~Dl~~~~~------------------~~~~~~~~~i~~~l~~~g~-~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 137 LGINQLIVAINKMDAVNYDE------------------KRYEEVKEEVSKLLKMVGY-KPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cCCCeEEEEEEccccccccH------------------HHHHHHHHHHHHHHHhhCC-CcCcceEEEeecccCCCccccc
Confidence 12347999999999864111 0112222223322221111 1124678889999999998754
No 196
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.18 E-value=5.6e-10 Score=94.60 Aligned_cols=111 Identities=21% Similarity=0.273 Sum_probs=70.7
Q ss_pred CCceeeEEecCCcccccc--------chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe
Q psy14891 195 GESIVNMVDVGGQRSQRR--------KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS 266 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~--------~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ 266 (359)
.+..+.+||++|...... .+..++..++++++|+|.++. ......++...+.. .+.|
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~------------~~~~~~~~~~~~~~---~~~~ 113 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP------------IGEGDEFILELLKK---SKTP 113 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc------------cCchHHHHHHHHHH---hCCC
Confidence 346788999999764432 344568899999999999972 11122222222221 1579
Q ss_pred EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 267 FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 267 iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
+++++||+|+..... ...+....+..+ .....++.+||+++.+++++|+.+.+
T Consensus 114 ~iiv~nK~Dl~~~~~-------------------~~~~~~~~~~~~--------~~~~~~~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 114 VILVLNKIDLVKDKE-------------------DLLPLLEKLKEL--------GPFAEIFPISALKGENVDELLEEIVK 166 (168)
T ss_pred EEEEEEchhccccHH-------------------HHHHHHHHHHhc--------cCCCceEEEEeccCCChHHHHHHHHh
Confidence 999999999863111 122223333321 11245678999999999999998865
Q ss_pred H
Q psy14891 347 L 347 (359)
Q Consensus 347 ~ 347 (359)
.
T Consensus 167 ~ 167 (168)
T cd04163 167 Y 167 (168)
T ss_pred h
Confidence 3
No 197
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.18 E-value=5.1e-10 Score=93.69 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=72.6
Q ss_pred CceeeEEecCCcccccc-------chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEE
Q psy14891 196 ESIVNMVDVGGQRSQRR-------KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFI 268 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~-------~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ii 268 (359)
...+.+||++|+..... .+..+++.++++++|+|.++ ........ ++... ...+.|++
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~----------~~~~~~~~-~~~~~----~~~~~~~i 108 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADL----------RADEEEEK-LLELL----RERGKPVL 108 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCC----------CCCHHHHH-HHHHH----HhcCCeEE
Confidence 56899999999877653 34457899999999999998 22222221 22222 22478999
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+++||+|+..+.- .....+... .. ........++.+||+++.++..+++.+...
T Consensus 109 vv~nK~D~~~~~~--------------------~~~~~~~~~--~~---~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 109 LVLNKIDLLPEEE--------------------EEELLELRL--LI---LLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred EEEEccccCChhh--------------------HHHHHHHHH--hh---cccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 9999999864321 111111000 00 111245667889999999999999987754
No 198
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.17 E-value=3.2e-10 Score=112.92 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=71.8
Q ss_pred EEEeeCCceeeEEecCCccc--------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 190 TNFRLGESIVNMVDVGGQRS--------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~--------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
..+.+.+..+.+|||+|+.. .+..+..++++++++|||+|.++ .-... -..+..++..
T Consensus 42 ~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~----------~~~~~--~~~~~~~l~~-- 107 (435)
T PRK00093 42 GEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRA----------GLTPA--DEEIAKILRK-- 107 (435)
T ss_pred EEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC----------CCCHH--HHHHHHHHHH--
Confidence 34456678899999999987 44556678899999999999886 11111 1112222222
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCchHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSNVQTV 340 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni~~v 340 (359)
.+.|+++++||+|+.... +...+|.. + .+ .++.+||+++.||.++
T Consensus 108 -~~~piilv~NK~D~~~~~----------------------~~~~~~~~-----l------g~~~~~~iSa~~g~gv~~l 153 (435)
T PRK00093 108 -SNKPVILVVNKVDGPDEE----------------------ADAYEFYS-----L------GLGEPYPISAEHGRGIGDL 153 (435)
T ss_pred -cCCcEEEEEECccCccch----------------------hhHHHHHh-----c------CCCCCEEEEeeCCCCHHHH
Confidence 268999999999964311 11122211 1 11 2467999999999999
Q ss_pred HHHHHH
Q psy14891 341 FHAVMD 346 (359)
Q Consensus 341 f~~v~~ 346 (359)
|+.+..
T Consensus 154 ~~~I~~ 159 (435)
T PRK00093 154 LDAILE 159 (435)
T ss_pred HHHHHh
Confidence 998876
No 199
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.16 E-value=4.9e-10 Score=94.92 Aligned_cols=118 Identities=19% Similarity=0.147 Sum_probs=79.8
Q ss_pred ccceeEEEEeeCCceeeEEecCCcccccc------chhhhcc--CCcEEEEEEECCCCccccccCCcccchHHHHHHHHH
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRR------KWIYCFD--DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQ 255 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~------~w~~~f~--~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~ 255 (359)
|.......+.+++..+.+|||+|++.+.. ++..++. +++++|+|+|.++ ... ...++..
T Consensus 30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~---~~~~~~~ 96 (158)
T cd01879 30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATN----------LER---NLYLTLQ 96 (158)
T ss_pred ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCc----------chh---HHHHHHH
Confidence 44444455666778899999999988765 3677775 9999999999887 222 2334444
Q ss_pred HHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc
Q psy14891 256 VVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS 335 (359)
Q Consensus 256 i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ 335 (359)
+.. .++|+++++||+|+..... .. .....+... ..+.++++||.++.
T Consensus 97 ~~~----~~~~~iiv~NK~Dl~~~~~------------------~~-~~~~~~~~~----------~~~~~~~iSa~~~~ 143 (158)
T cd01879 97 LLE----LGLPVVVALNMIDEAEKRG------------------IK-IDLDKLSEL----------LGVPVVPTSARKGE 143 (158)
T ss_pred HHH----cCCCEEEEEehhhhccccc------------------ch-hhHHHHHHh----------hCCCeEEEEccCCC
Confidence 433 2689999999999864321 11 111122111 12457789999999
Q ss_pred hHHHHHHHHHHH
Q psy14891 336 NVQTVFHAVMDL 347 (359)
Q Consensus 336 ni~~vf~~v~~~ 347 (359)
|+..+|+.+...
T Consensus 144 ~~~~l~~~l~~~ 155 (158)
T cd01879 144 GIDELKDAIAEL 155 (158)
T ss_pred CHHHHHHHHHHH
Confidence 999999888664
No 200
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.16 E-value=6.4e-10 Score=97.14 Aligned_cols=102 Identities=15% Similarity=0.277 Sum_probs=59.7
Q ss_pred eeeEEecCCccc------cccch----hhhcc---CCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCC
Q psy14891 198 IVNMVDVGGQRS------QRRKW----IYCFD---DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFRE 264 (359)
Q Consensus 198 ~l~i~D~~Gq~~------~r~~w----~~~f~---~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~ 264 (359)
.+.+|||+|... .+..| ..|++ .++++|+|+|.+. .- ......++. ++.. .+
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~----------~~-~~~~~~~~~-~~~~---~~ 129 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRH----------PL-KELDLEMLE-WLRE---RG 129 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCC----------CC-CHHHHHHHH-HHHH---cC
Confidence 588999999532 13333 34555 4579999999875 11 112222232 2222 36
Q ss_pred CeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 265 ASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 265 ~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
.|+++++||+|+..+. +.+...+.+++.+... .....++.+||++++||+
T Consensus 130 ~pviiv~nK~D~~~~~--------------------~~~~~~~~i~~~l~~~----~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 130 IPVLIVLTKADKLKKS--------------------ELNKQLKKIKKALKKD----ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCEEEEEECcccCCHH--------------------HHHHHHHHHHHHHhhc----cCCCceEEEECCCCCCCC
Confidence 8999999999986421 1222333344433321 123457889999999873
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.15 E-value=1.2e-09 Score=99.86 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=32.8
Q ss_pred EEeeCCceeeEEecCCccccc-------cchhhhccCCcEEEEEEECCC
Q psy14891 191 NFRLGESIVNMVDVGGQRSQR-------RKWIYCFDDVKAVLYVVALSG 232 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r-------~~w~~~f~~~~~iifv~dls~ 232 (359)
.+.+++..+++||++|+.+.. +.+..++++++++++|+|.++
T Consensus 41 ~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 41 VLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred EEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCc
Confidence 345577899999999985432 234568999999999999986
No 202
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.13 E-value=1.2e-10 Score=101.39 Aligned_cols=75 Identities=21% Similarity=0.351 Sum_probs=55.1
Q ss_pred ceeeEEecCCccccccchhhh---ccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC--CCCCeEEEEe
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYC---FDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY--FREASFILFL 271 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~---f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~--~~~~~iiL~~ 271 (359)
.++++.|++|+++.|...... ..++.|||||+|.+.+ ...+.+..+++..++.... ...+|++|++
T Consensus 49 ~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~---------~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIac 119 (181)
T PF09439_consen 49 KKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD---------QKELRDVAEYLYDILSDTEVQKNKPPILIAC 119 (181)
T ss_dssp TCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHCCTT--EEEEEE
T ss_pred CEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc---------hhhHHHHHHHHHHHHHhhhhccCCCCEEEEE
Confidence 568899999999999765554 7899999999998852 3457777777777776543 3578999999
Q ss_pred eCCCcchhh
Q psy14891 272 NKFDLFREK 280 (359)
Q Consensus 272 NK~Dl~~~k 280 (359)
||+|++..+
T Consensus 120 NK~Dl~~A~ 128 (181)
T PF09439_consen 120 NKQDLFTAK 128 (181)
T ss_dssp E-TTSTT--
T ss_pred eCccccccC
Confidence 999998643
No 203
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.13 E-value=3.3e-10 Score=97.71 Aligned_cols=124 Identities=18% Similarity=0.183 Sum_probs=76.4
Q ss_pred EeeC-CceeeEEecCCcc----ccccch---hhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC--
Q psy14891 192 FRLG-ESIVNMVDVGGQR----SQRRKW---IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY-- 261 (359)
Q Consensus 192 ~~~~-~~~l~i~D~~Gq~----~~r~~w---~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~-- 261 (359)
+.++ +..+.+|||+|+. ..+.+| ..++++++++++|+|.++-+.. ...+.+.+...+..++.....
T Consensus 38 ~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 113 (176)
T cd01881 38 VEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLYDLET 113 (176)
T ss_pred EEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHhhhhh
Confidence 4456 7889999999973 233343 3457889999999999871000 000344444445555543321
Q ss_pred ----CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 262 ----FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 262 ----~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
..+.|+++++||+|+..... ..... ... .. ......++.+||+++.++
T Consensus 114 ~~~~~~~~p~ivv~NK~Dl~~~~~------------------~~~~~----~~~-~~-----~~~~~~~~~~Sa~~~~gl 165 (176)
T cd01881 114 ILGLLTAKPVIYVLNKIDLDDAEE------------------LEEEL----VRE-LA-----LEEGAEVVPISAKTEEGL 165 (176)
T ss_pred HHHHHhhCCeEEEEEchhcCchhH------------------HHHHH----HHH-Hh-----cCCCCCEEEEehhhhcCH
Confidence 24789999999999864322 00000 011 00 013345788999999999
Q ss_pred HHHHHHHHHH
Q psy14891 338 QTVFHAVMDL 347 (359)
Q Consensus 338 ~~vf~~v~~~ 347 (359)
+++++.+...
T Consensus 166 ~~l~~~l~~~ 175 (176)
T cd01881 166 DELIRAIYEL 175 (176)
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 204
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.13 E-value=3.6e-10 Score=111.51 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=76.2
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+..+.+||++|++.|.+.|......++++|+|+|.++- ....++.+.+..+ .. ....|+++++||+|
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g----------~~~~qt~e~l~~l-~~--~gi~~iIVvvNK~D 145 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP----------CPQPQTKEHLMAL-EI--IGIKNIVIVQNKID 145 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC----------ccccchHHHHHHH-HH--cCCCeEEEEEEccc
Confidence 35789999999999999998888899999999999861 1112222222222 11 12347899999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
+....- .. ...++..+++...+ ...+.++.+||++++|+..+++.+...+
T Consensus 146 l~~~~~--~~--------------~~~~~i~~~l~~~~-------~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 146 LVSKEK--AL--------------ENYEEIKEFVKGTV-------AENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred cCCHHH--HH--------------HHHHHHHhhhhhcc-------cCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 864211 00 11223333332211 1245678899999999999999887654
No 205
>KOG4423|consensus
Probab=99.11 E-value=4.4e-11 Score=102.07 Aligned_cols=120 Identities=10% Similarity=0.056 Sum_probs=90.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh---ccCCCCCeEEEEeeC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN---NRYFREASFILFLNK 273 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~---~~~~~~~~iiL~~NK 273 (359)
+.+++||++||+++..+..-||+.+++..+|+|+|. .-.++-+..|.+.+.. -|....+|+++..||
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~----------s~tfe~~skwkqdldsk~qLpng~Pv~~vllank 144 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTR----------SLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANK 144 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEccc----------cccccHHHHHHHhccCcccCCCCCcchheeccch
Confidence 789999999999999999999999999999999998 4555556666666543 345567899999999
Q ss_pred CCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 274 FDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 274 ~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
||....-. . .......+|.++ +.-.-+++||||++.||.++-+.+++.|+.+.
T Consensus 145 Cd~e~~a~--~---------------~~~~~~d~f~ke---------ngf~gwtets~Kenkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 145 CDQEKSAK--N---------------EATRQFDNFKKE---------NGFEGWTETSAKENKNIPEAQRELVEKILVND 197 (229)
T ss_pred hccChHhh--h---------------hhHHHHHHHHhc---------cCccceeeeccccccChhHHHHHHHHHHHhhc
Confidence 99754322 0 122333344333 12234789999999999999999999988654
No 206
>PRK13768 GTPase; Provisional
Probab=99.11 E-value=1e-10 Score=108.06 Aligned_cols=130 Identities=18% Similarity=0.144 Sum_probs=70.7
Q ss_pred eeeEEecCCccc---cccchhhhccC-----CcEEEEEEECCCCccccccCCcccchHH--HHHHHHHHHhccCCCCCeE
Q psy14891 198 IVNMVDVGGQRS---QRRKWIYCFDD-----VKAVLYVVALSGYDMTLLEDSSVNRLDE--SLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 198 ~l~i~D~~Gq~~---~r~~w~~~f~~-----~~~iifv~dls~yd~~l~ed~~~~~l~e--s~~~~~~i~~~~~~~~~~i 267 (359)
.+.+||++|+.. ++..|..+++. +++++||+|.+. ..+..+ ...++...+.. ..+.|+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~----------~~~~~d~~~~~~l~~~~~~--~~~~~~ 165 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVL----------AKTPSDFVSLLLLALSVQL--RLGLPQ 165 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHH----------hCCHHHHHHHHHHHHHHHH--HcCCCE
Confidence 577999999866 46777665544 789999999875 222111 12222222211 137899
Q ss_pred EEEeeCCCcchhhhhhcCCcccccccc-------cc--CCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSD-------FK--GPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~-------y~--g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
++++||+|+..+.- . ..+..++.+ +. ++ .. .....-+.+.+.... ....++.+||+++++++
T Consensus 166 i~v~nK~D~~~~~~--~-~~~~~~l~~~~~~~~~l~~~~~-~~-~~~~~~~~~~i~~~~----~~~~vi~iSa~~~~gl~ 236 (253)
T PRK13768 166 IPVLNKADLLSEEE--L-ERILKWLEDPEYLLEELKLEKG-LQ-GLLSLELLRALEETG----LPVRVIPVSAKTGEGFD 236 (253)
T ss_pred EEEEEhHhhcCchh--H-HHHHHHHhCHHHHHHHHhcccc-hH-HHHHHHHHHHHHHHC----CCCcEEEEECCCCcCHH
Confidence 99999999864311 0 011111110 00 01 00 111111112222221 12345779999999999
Q ss_pred HHHHHHHHHH
Q psy14891 339 TVFHAVMDLV 348 (359)
Q Consensus 339 ~vf~~v~~~I 348 (359)
++.+.+.+.+
T Consensus 237 ~L~~~I~~~l 246 (253)
T PRK13768 237 ELYAAIQEVF 246 (253)
T ss_pred HHHHHHHHHc
Confidence 9988876543
No 207
>KOG0096|consensus
Probab=99.10 E-value=2.9e-10 Score=97.49 Aligned_cols=127 Identities=13% Similarity=0.087 Sum_probs=99.0
Q ss_pred ccccceeEEEEee---CC-ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 182 VRTNGIIETNFRL---GE-SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 182 ~~T~G~~~~~~~~---~~-~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
.+|+|+......+ .+ ++|..|||+||+.+-.+..-||-...|.|+++|++. ......+-.|.+..+
T Consensus 40 ~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVts----------r~t~~n~~rwhrd~~ 109 (216)
T KOG0096|consen 40 PATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTS----------RFTYKNVPRWHRDLV 109 (216)
T ss_pred cCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeee----------hhhhhcchHHHHHHH
Confidence 4778876665554 23 899999999999999999999999999999999998 566667777887776
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
.. ..++||++.|||.|+...++ +..++ .|.+ .+.+++++.||+.+-|.
T Consensus 110 rv--~~NiPiv~cGNKvDi~~r~~--k~k~v------------------~~~r----------kknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 110 RV--RENIPIVLCGNKVDIKARKV--KAKPV------------------SFHR----------KKNLQYYEISAKSNYNF 157 (216)
T ss_pred HH--hcCCCeeeeccceecccccc--ccccc------------------eeee----------cccceeEEeeccccccc
Confidence 54 35799999999999987665 33221 1111 36788899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14891 338 QTVFHAVMDLVIK 350 (359)
Q Consensus 338 ~~vf~~v~~~Il~ 350 (359)
..-|.-++..+..
T Consensus 158 ekPFl~LarKl~G 170 (216)
T KOG0096|consen 158 ERPFLWLARKLTG 170 (216)
T ss_pred ccchHHHhhhhcC
Confidence 9999888776643
No 208
>PRK13351 elongation factor G; Reviewed
Probab=99.09 E-value=1.9e-09 Score=113.29 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=65.8
Q ss_pred cccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc
Q psy14891 181 RVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR 260 (359)
Q Consensus 181 r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~ 260 (359)
|..|++.....+.+++..+.+|||+|+..+...|..+++.++++|+|+|.++ ... ......|..+..
T Consensus 57 r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~----------~~~-~~~~~~~~~~~~-- 123 (687)
T PRK13351 57 RGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVT----------GVQ-PQTETVWRQADR-- 123 (687)
T ss_pred cCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCC----------CCC-HHHHHHHHHHHh--
Confidence 4567776667778889999999999999999999999999999999999987 222 223455544432
Q ss_pred CCCCCeEEEEeeCCCcchh
Q psy14891 261 YFREASFILFLNKFDLFRE 279 (359)
Q Consensus 261 ~~~~~~iiL~~NK~Dl~~~ 279 (359)
.++|+++|+||+|+...
T Consensus 124 --~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 124 --YGIPRLIFINKMDRVGA 140 (687)
T ss_pred --cCCCEEEEEECCCCCCC
Confidence 26899999999998753
No 209
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.08 E-value=1.4e-09 Score=107.99 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=73.9
Q ss_pred EEEeeCCceeeEEecCCc--------cccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 190 TNFRLGESIVNMVDVGGQ--------RSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq--------~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
..+.+++..+.+|||+|. +.++..+..+++++++++||+|.++ .- ...... +..++..
T Consensus 40 ~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~----------~~-~~~d~~-i~~~l~~-- 105 (429)
T TIGR03594 40 GDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGRE----------GL-TPEDEE-IAKWLRK-- 105 (429)
T ss_pred EEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CC-CHHHHH-HHHHHHH--
Confidence 344556778999999996 4456667778899999999999875 11 111112 2222221
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
.+.|+++++||+|+..... . +.+ |..+. --.++.+||+.+.++.+++
T Consensus 106 -~~~piilVvNK~D~~~~~~-------------------~---~~~-----~~~lg-----~~~~~~vSa~~g~gv~~ll 152 (429)
T TIGR03594 106 -SGKPVILVANKIDGKKEDA-------------------V---AAE-----FYSLG-----FGEPIPISAEHGRGIGDLL 152 (429)
T ss_pred -hCCCEEEEEECccCCcccc-------------------c---HHH-----HHhcC-----CCCeEEEeCCcCCChHHHH
Confidence 3689999999999864321 0 111 11111 1135789999999999999
Q ss_pred HHHHHHH
Q psy14891 342 HAVMDLV 348 (359)
Q Consensus 342 ~~v~~~I 348 (359)
+.+.+.+
T Consensus 153 ~~i~~~l 159 (429)
T TIGR03594 153 DAILELL 159 (429)
T ss_pred HHHHHhc
Confidence 9888765
No 210
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.06 E-value=2.1e-09 Score=109.96 Aligned_cols=132 Identities=10% Similarity=0.076 Sum_probs=77.4
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
..+.+|||+||+.|+.+|..+++.++++|+|+|.++= -...+...+..+.. .++|+++++||+|+
T Consensus 69 ~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g-----------~~~qt~e~i~~l~~----~~vpiIVv~NK~Dl 133 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEG-----------FKPQTQEALNILRM----YKTPFVVAANKIDR 133 (590)
T ss_pred CcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC-----------CCHhHHHHHHHHHH----cCCCEEEEEECCCc
Confidence 3588999999999999999999999999999999861 11222222222211 36899999999998
Q ss_pred chhhhhhcCCccccccccccCCC----CCHHHHHHHHHHHHhhhc---------cCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPD----FDVDSGALFIQHKFALRN---------HNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~----~~~~~a~~fi~~~f~~~~---------~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
....- ...-..++..+.-.. .+.++....+..++.... ......+.+..+||++++|+.++...
T Consensus 134 ~~~~~---~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~ 210 (590)
T TIGR00491 134 IPGWR---SHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTM 210 (590)
T ss_pred cchhh---hccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHH
Confidence 64321 000001111111000 011111111111111110 01134577889999999999999887
Q ss_pred HHH
Q psy14891 344 VMD 346 (359)
Q Consensus 344 v~~ 346 (359)
+..
T Consensus 211 l~~ 213 (590)
T TIGR00491 211 LAG 213 (590)
T ss_pred HHH
Confidence 653
No 211
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.06 E-value=1.1e-09 Score=108.10 Aligned_cols=116 Identities=13% Similarity=0.111 Sum_probs=69.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
..+.+|||+|++.+......-...++++|+|+|.++ .....++...+..+.. ....|+++++||+|+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~----------~~~~~~t~~~l~~l~~---~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANE----------PCPQPQTKEHLMALDI---IGIKNIVIVQNKIDL 151 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC----------CCCChhHHHHHHHHHH---cCCCcEEEEEEeecc
Confidence 578899999998876543333345699999999985 1111222222322211 122478999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
..+.- .. ...++...++...+ ...+.++.+||++++||..+|+.+...+
T Consensus 152 ~~~~~--~~--------------~~~~~i~~~l~~~~-------~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 152 VSKER--AL--------------ENYEQIKEFVKGTV-------AENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred ccchh--HH--------------HHHHHHHHHhcccc-------CCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 64211 00 01122222222110 1235678899999999999999887754
No 212
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.05 E-value=2e-09 Score=113.31 Aligned_cols=113 Identities=17% Similarity=0.160 Sum_probs=73.2
Q ss_pred EEeeCCceeeEEecCCccc--------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 191 NFRLGESIVNMVDVGGQRS--------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~--------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
...+++..+.+|||+|++. ++..+..+++.++++|||+|.++ .+...-..+...+..
T Consensus 317 ~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~------------~~~~~d~~i~~~Lr~--- 381 (712)
T PRK09518 317 DAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV------------GLTSTDERIVRMLRR--- 381 (712)
T ss_pred EEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC------------CCCHHHHHHHHHHHh---
Confidence 3445677899999999874 34455667899999999999875 111111122222221
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|+++++||+|+..... .+.+|.. +. ... .+++||+++.||.++|+
T Consensus 382 ~~~pvIlV~NK~D~~~~~~----------------------~~~~~~~-----lg---~~~--~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 382 AGKPVVLAVNKIDDQASEY----------------------DAAEFWK-----LG---LGE--PYPISAMHGRGVGDLLD 429 (712)
T ss_pred cCCCEEEEEECcccccchh----------------------hHHHHHH-----cC---CCC--eEEEECCCCCCchHHHH
Confidence 4789999999999753211 1112211 11 011 25799999999999999
Q ss_pred HHHHHHHH
Q psy14891 343 AVMDLVIK 350 (359)
Q Consensus 343 ~v~~~Il~ 350 (359)
.+.+.+..
T Consensus 430 ~i~~~l~~ 437 (712)
T PRK09518 430 EALDSLKV 437 (712)
T ss_pred HHHHhccc
Confidence 99887654
No 213
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.04 E-value=2.5e-09 Score=91.08 Aligned_cols=115 Identities=22% Similarity=0.226 Sum_probs=77.6
Q ss_pred ccceeEEEEeeCCceeeEEecCCcccc------ccchhhhc--cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHH
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQ------RRKWIYCF--DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQ 255 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~------r~~w~~~f--~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~ 255 (359)
|+-...-.+.+++..+.++|++|--+. .+.+..|. +..+++|.|+|.+. ++..+.+..+
T Consensus 34 Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~-------------l~r~l~l~~q 100 (156)
T PF02421_consen 34 TVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN-------------LERNLYLTLQ 100 (156)
T ss_dssp SSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG-------------HHHHHHHHHH
T ss_pred CeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC-------------HHHHHHHHHH
Confidence 444555667778899999999995432 34455564 68999999999765 6777777777
Q ss_pred HHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc
Q psy14891 256 VVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS 335 (359)
Q Consensus 256 i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ 335 (359)
+... +.|+++++||+|..+++- .. .+.+.- .+. ..+.+..+||++++
T Consensus 101 l~e~----g~P~vvvlN~~D~a~~~g----~~------------id~~~L----s~~---------Lg~pvi~~sa~~~~ 147 (156)
T PF02421_consen 101 LLEL----GIPVVVVLNKMDEAERKG----IE------------IDAEKL----SER---------LGVPVIPVSARTGE 147 (156)
T ss_dssp HHHT----TSSEEEEEETHHHHHHTT----EE------------E-HHHH----HHH---------HTS-EEEEBTTTTB
T ss_pred HHHc----CCCEEEEEeCHHHHHHcC----CE------------ECHHHH----HHH---------hCCCEEEEEeCCCc
Confidence 7653 689999999999876542 11 122222 221 23668889999999
Q ss_pred hHHHHHHHH
Q psy14891 336 NVQTVFHAV 344 (359)
Q Consensus 336 ni~~vf~~v 344 (359)
+++++.++|
T Consensus 148 g~~~L~~~I 156 (156)
T PF02421_consen 148 GIDELKDAI 156 (156)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHhhC
Confidence 999998875
No 214
>KOG0090|consensus
Probab=99.04 E-value=1.1e-09 Score=95.87 Aligned_cols=80 Identities=24% Similarity=0.433 Sum_probs=62.4
Q ss_pred EEeeCCceeeEEecCCccccccchhhhcc---CCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc--CCCCC
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRRKWIYCFD---DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR--YFREA 265 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~---~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~--~~~~~ 265 (359)
.+..++-..++.|.+|+.+.|.+...||. .+.+||||+|...|+ ....+.-+.+-.++.+. .-..+
T Consensus 76 ~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~---------k~vrdvaefLydil~~~~~~~~~~ 146 (238)
T KOG0090|consen 76 TYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL---------KNVRDVAEFLYDILLDSRVKKNKP 146 (238)
T ss_pred eEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc---------hhhHHHHHHHHHHHHhhccccCCC
Confidence 34444555789999999999999999998 799999999999863 44566666666665443 34578
Q ss_pred eEEEEeeCCCcchh
Q psy14891 266 SFILFLNKFDLFRE 279 (359)
Q Consensus 266 ~iiL~~NK~Dl~~~ 279 (359)
|++|..||+|++..
T Consensus 147 ~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 147 PVLIACNKQDLFTA 160 (238)
T ss_pred CEEEEecchhhhhc
Confidence 99999999999754
No 215
>PRK00089 era GTPase Era; Reviewed
Probab=99.01 E-value=4.3e-09 Score=99.28 Aligned_cols=112 Identities=19% Similarity=0.235 Sum_probs=68.7
Q ss_pred CCceeeEEecCCcccccc--------chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe
Q psy14891 195 GESIVNMVDVGGQRSQRR--------KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS 266 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~--------~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ 266 (359)
++..+.+|||+|....+. .+..++.++++++||+|.++. +.+....+...+.. .+.|
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~------------~~~~~~~i~~~l~~---~~~p 115 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK------------IGPGDEFILEKLKK---VKTP 115 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC------------CChhHHHHHHHHhh---cCCC
Confidence 346788999999754332 233467899999999998861 11122222233221 3689
Q ss_pred EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 267 FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 267 iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
+++++||+|+...+- ......+.+.+.+ ....++.+||+++.|+..+++.+.+
T Consensus 116 vilVlNKiDl~~~~~-------------------~l~~~~~~l~~~~--------~~~~i~~iSA~~~~gv~~L~~~L~~ 168 (292)
T PRK00089 116 VILVLNKIDLVKDKE-------------------ELLPLLEELSELM--------DFAEIVPISALKGDNVDELLDVIAK 168 (292)
T ss_pred EEEEEECCcCCCCHH-------------------HHHHHHHHHHhhC--------CCCeEEEecCCCCCCHHHHHHHHHH
Confidence 999999999863221 0111111111111 1234677899999999999988876
Q ss_pred HH
Q psy14891 347 LV 348 (359)
Q Consensus 347 ~I 348 (359)
.+
T Consensus 169 ~l 170 (292)
T PRK00089 169 YL 170 (292)
T ss_pred hC
Confidence 64
No 216
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.00 E-value=2.8e-09 Score=99.23 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=61.3
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
..|+......+..++.++++|||+|+..|...+..+++.++++|+|+|.++- - ......+|... .
T Consensus 56 g~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g----------~-~~~~~~i~~~~-~--- 120 (267)
T cd04169 56 GISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG----------V-EPQTRKLFEVC-R--- 120 (267)
T ss_pred CCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC----------c-cHHHHHHHHHH-H---
Confidence 4455566677888899999999999999888777789999999999998861 1 11223334332 2
Q ss_pred CCCCeEEEEeeCCCcch
Q psy14891 262 FREASFILFLNKFDLFR 278 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~ 278 (359)
..++|+++|+||+|+..
T Consensus 121 ~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 121 LRGIPIITFINKLDREG 137 (267)
T ss_pred hcCCCEEEEEECCccCC
Confidence 13689999999999854
No 217
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.99 E-value=2.1e-08 Score=91.01 Aligned_cols=132 Identities=11% Similarity=0.164 Sum_probs=73.3
Q ss_pred EeeCCceeeEEecCCccccccchhhhcc--CCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEE
Q psy14891 192 FRLGESIVNMVDVGGQRSQRRKWIYCFD--DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFIL 269 (359)
Q Consensus 192 ~~~~~~~l~i~D~~Gq~~~r~~w~~~f~--~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL 269 (359)
+..++..+.+.|++|++.+.+-...... .++++++|+|... .-......++..+.. .+.|+++
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~-----------g~~~~d~~~l~~l~~----~~ip~iv 143 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANA-----------GIIGMTKEHLGLALA----LNIPVFV 143 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCEEE
Confidence 3446678999999999988654444443 5899999999775 112333444444433 3578999
Q ss_pred EeeCCCcchh-hhhhcCCccccccc--cccC-C--CCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 270 FLNKFDLFRE-KILYSGRHLRYYLS--DFKG-P--DFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 270 ~~NK~Dl~~~-k~~~~~~~l~~~fp--~y~g-~--~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
++||+|+..+ ++......+...+. .+.. + ..+.+++.....+ ......+.++.+||.+++++..+...
T Consensus 144 vvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~------~~~~~~~pi~~vSavtg~Gi~~L~~~ 217 (224)
T cd04165 144 VVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASN------FSSERIVPIFQVSNVTGEGLDLLHAF 217 (224)
T ss_pred EEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhc------CCccccCcEEEeeCCCccCHHHHHHH
Confidence 9999998543 22000111111110 0000 0 0001111111111 01124557888999999999988776
Q ss_pred H
Q psy14891 344 V 344 (359)
Q Consensus 344 v 344 (359)
+
T Consensus 218 L 218 (224)
T cd04165 218 L 218 (224)
T ss_pred H
Confidence 5
No 218
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.99 E-value=8.7e-09 Score=96.03 Aligned_cols=81 Identities=19% Similarity=0.128 Sum_probs=60.8
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+......+.+++..+.+|||+|+..+...|..+++.++++|+|+|.++- . .......|..+..
T Consensus 50 ~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g----------~-~~~~~~~~~~~~~---- 114 (268)
T cd04170 50 MSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSG----------V-EVGTEKLWEFADE---- 114 (268)
T ss_pred ccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCC----------C-CHHHHHHHHHHHH----
Confidence 344445556677888999999999998888899999999999999999872 1 1223344444322
Q ss_pred CCCeEEEEeeCCCcch
Q psy14891 263 REASFILFLNKFDLFR 278 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~ 278 (359)
.+.|+++|+||+|+..
T Consensus 115 ~~~p~iivvNK~D~~~ 130 (268)
T cd04170 115 AGIPRIIFINKMDRER 130 (268)
T ss_pred cCCCEEEEEECCccCC
Confidence 3679999999999764
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.98 E-value=1.3e-08 Score=91.52 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=51.6
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+.+|||+|+..+...+..++..++++|+|+|.++ ... .....++..... .+.|+++++||+|
T Consensus 70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~----------~~~-~~~~~~~~~~~~----~~~p~iiviNK~D 134 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVE----------GVT-SNTERLIRHAIL----EGLPIVLVINKID 134 (213)
T ss_pred EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCC----------CCC-HHHHHHHHHHHH----cCCCEEEEEECcc
Confidence 3679999999999999899999999999999999986 121 222333443322 3589999999999
Q ss_pred cc
Q psy14891 276 LF 277 (359)
Q Consensus 276 l~ 277 (359)
+.
T Consensus 135 ~~ 136 (213)
T cd04167 135 RL 136 (213)
T ss_pred cC
Confidence 75
No 220
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.97 E-value=2.2e-08 Score=84.99 Aligned_cols=111 Identities=12% Similarity=0.070 Sum_probs=64.8
Q ss_pred eeeEEecCCc----------cccccchhhhccC---CcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCC
Q psy14891 198 IVNMVDVGGQ----------RSQRRKWIYCFDD---VKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFRE 264 (359)
Q Consensus 198 ~l~i~D~~Gq----------~~~r~~w~~~f~~---~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~ 264 (359)
.+.+|||+|. +.++..+..|+.. ++++++++|..... .....+...++.. .+
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~~~~~l~~-------~~ 110 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGP--------TEIDLEMLDWLEE-------LG 110 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCC--------CHhHHHHHHHHHH-------cC
Confidence 7889999983 3345556666654 56888999987510 0111112222222 14
Q ss_pred CeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHH
Q psy14891 265 ASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAV 344 (359)
Q Consensus 265 ~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v 344 (359)
.|+++++||+|+...... . .........+.. ......++.+||+|+.++.++++.+
T Consensus 111 ~~vi~v~nK~D~~~~~~~-~---------------~~~~~~~~~l~~--------~~~~~~~~~~Sa~~~~~~~~l~~~l 166 (170)
T cd01876 111 IPFLVVLTKADKLKKSEL-A---------------KALKEIKKELKL--------FEIDPPIILFSSLKGQGIDELRALI 166 (170)
T ss_pred CCEEEEEEchhcCChHHH-H---------------HHHHHHHHHHHh--------ccCCCceEEEecCCCCCHHHHHHHH
Confidence 799999999998532110 0 011122222221 0123456689999999999999988
Q ss_pred HHH
Q psy14891 345 MDL 347 (359)
Q Consensus 345 ~~~ 347 (359)
...
T Consensus 167 ~~~ 169 (170)
T cd01876 167 EKW 169 (170)
T ss_pred HHh
Confidence 754
No 221
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.97 E-value=2.3e-08 Score=97.85 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=73.5
Q ss_pred ceeeEEecCCccccc-------cchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh-ccCCCCCeEE
Q psy14891 197 SIVNMVDVGGQRSQR-------RKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN-NRYFREASFI 268 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r-------~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~-~~~~~~~~ii 268 (359)
.++.++||+|.-.-. .....+++.++++++|+|++.+|. .+.+.+...+.+++.. .+.+.+.|++
T Consensus 207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~-------~d~~e~~~~l~~eL~~~~~~L~~kP~I 279 (390)
T PRK12298 207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDG-------SDPVENARIIINELEKYSPKLAEKPRW 279 (390)
T ss_pred cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccc-------cChHHHHHHHHHHHHhhhhhhcCCCEE
Confidence 568999999975321 122235789999999999985321 2333433444444433 2334578999
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
|++||+|+..+.. ..+..+.+.+++ .....++.+||+++.+|..+++.+.+.+
T Consensus 280 lVlNKiDl~~~~e--------------------l~~~l~~l~~~~-------~~~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 280 LVFNKIDLLDEEE--------------------AEERAKAIVEAL-------GWEGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred EEEeCCccCChHH--------------------HHHHHHHHHHHh-------CCCCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 9999999864321 111111112211 0112356799999999999999998776
Q ss_pred H
Q psy14891 349 I 349 (359)
Q Consensus 349 l 349 (359)
-
T Consensus 333 ~ 333 (390)
T PRK12298 333 E 333 (390)
T ss_pred h
Confidence 4
No 222
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.96 E-value=2.3e-08 Score=101.48 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=60.9
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+......+.+++..+++|||+|+..|......+++.++++|+|+|.++ . -......+|... . .
T Consensus 65 iSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~----------g-v~~~t~~l~~~~-~---~ 129 (526)
T PRK00741 65 ISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAK----------G-VEPQTRKLMEVC-R---L 129 (526)
T ss_pred CceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCC----------C-CCHHHHHHHHHH-H---h
Confidence 34445556778889999999999999998877778999999999999886 1 112233444332 2 2
Q ss_pred CCCeEEEEeeCCCcch
Q psy14891 263 REASFILFLNKFDLFR 278 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~ 278 (359)
.++|+++|+||+|+..
T Consensus 130 ~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 130 RDTPIFTFINKLDRDG 145 (526)
T ss_pred cCCCEEEEEECCcccc
Confidence 4789999999999854
No 223
>PRK09866 hypothetical protein; Provisional
Probab=98.94 E-value=2.8e-08 Score=100.55 Aligned_cols=116 Identities=12% Similarity=0.097 Sum_probs=71.3
Q ss_pred ceeeEEecCCcccc-----ccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEe
Q psy14891 197 SIVNMVDVGGQRSQ-----RRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFL 271 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~-----r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~ 271 (359)
..+.+.||+|-..- ...-...+.++|+|+||+|... .....+ .... ..+.. ...+.|++++.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~----------~~s~~D-eeIl-k~Lkk-~~K~~PVILVV 296 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQ----------LKSISD-EEVR-EAILA-VGQSVPLYVLV 296 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCC----------CCChhH-HHHH-HHHHh-cCCCCCEEEEE
Confidence 67889999997431 1223446889999999999764 111111 1222 22222 11236999999
Q ss_pred eCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 272 NKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 272 NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
||+|+.++.- .+.+....|+...+..... ..--.+.+||+.+.|+..+.+.+..
T Consensus 297 NKIDl~dree------------------ddkE~Lle~V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 297 NKFDQQDRNS------------------DDADQVRALISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred EcccCCCccc------------------chHHHHHHHHHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 9999743211 2456667777654332111 1122466999999999998887765
No 224
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.94 E-value=1e-08 Score=86.47 Aligned_cols=111 Identities=16% Similarity=0.212 Sum_probs=72.8
Q ss_pred EEEeeCCceeeEEecCCcccccc--------chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 190 TNFRLGESIVNMVDVGGQRSQRR--------KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~~r~--------~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
......+..+.+|||+|+..++. .+..++++++++++|+|..+. .... ...++ .++..
T Consensus 38 ~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~-~~~~~-~~~~~-- 103 (157)
T cd01894 38 GEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREG----------LTPA-DEEIA-KYLRK-- 103 (157)
T ss_pred EEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEecccc----------CCcc-HHHHH-HHHHh--
Confidence 34455678899999999988654 445678899999999998751 1111 11222 22221
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
.+.|+++++||+|+..... . ...+.... .-.++++||+++.+++++|
T Consensus 104 -~~~piiiv~nK~D~~~~~~------------------~---------~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 104 -SKKPVILVVNKVDNIKEED------------------E---------AAEFYSLG-----FGEPIPISAEHGRGIGDLL 150 (157)
T ss_pred -cCCCEEEEEECcccCChHH------------------H---------HHHHHhcC-----CCCeEEEecccCCCHHHHH
Confidence 2489999999999865332 1 01111110 0134689999999999999
Q ss_pred HHHHHH
Q psy14891 342 HAVMDL 347 (359)
Q Consensus 342 ~~v~~~ 347 (359)
+.+.+.
T Consensus 151 ~~l~~~ 156 (157)
T cd01894 151 DAILEL 156 (157)
T ss_pred HHHHhh
Confidence 998865
No 225
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.93 E-value=1.6e-10 Score=105.59 Aligned_cols=132 Identities=14% Similarity=0.046 Sum_probs=61.3
Q ss_pred eeeEEecCCccccccchhhhc--------cCCcEEEEEEECCCCccccccCCcccchHH-HHHHHHHHHhccCCCCCeEE
Q psy14891 198 IVNMVDVGGQRSQRRKWIYCF--------DDVKAVLYVVALSGYDMTLLEDSSVNRLDE-SLNLFEQVVNNRYFREASFI 268 (359)
Q Consensus 198 ~l~i~D~~Gq~~~r~~w~~~f--------~~~~~iifv~dls~yd~~l~ed~~~~~l~e-s~~~~~~i~~~~~~~~~~ii 268 (359)
.+.++||+||-+.-..|..-- ...-+++|++|.+-... ...+-. .+.-+...++ -+.|.|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~-------~~~f~s~~L~s~s~~~~----~~lP~v 160 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSD-------PSKFVSSLLLSLSIMLR----LELPHV 160 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SS-------HHHHHHHHHHHHHHHHH----HTSEEE
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccC-------hhhHHHHHHHHHHHHhh----CCCCEE
Confidence 567999999998877776544 55678999999875111 111221 1222222222 368999
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHH----HHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGA----LFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAV 344 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~----~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v 344 (359)
.++||+|+..+.. +. .-.++.+.. ...... +-+.....++.......+.++..|+++++++..++..+
T Consensus 161 nvlsK~Dl~~~~~--~~--~l~~~~d~~----~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 161 NVLSKIDLLSKYL--EF--ILEWFEDPD----SLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI 232 (238)
T ss_dssp EEE--GGGS-HHH--HH--HHHHHHSHH----HHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred EeeeccCcccchh--HH--HHHHhcChH----HHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence 9999999987432 10 011111111 011110 11111111111111222267889999999999999887
Q ss_pred HHHH
Q psy14891 345 MDLV 348 (359)
Q Consensus 345 ~~~I 348 (359)
.+.+
T Consensus 233 d~a~ 236 (238)
T PF03029_consen 233 DKAN 236 (238)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 226
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.93 E-value=1.5e-08 Score=104.07 Aligned_cols=130 Identities=10% Similarity=0.083 Sum_probs=75.0
Q ss_pred eeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcch
Q psy14891 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFR 278 (359)
Q Consensus 199 l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~ 278 (359)
+.+|||+|++.|+..|...+..++++|+|+|.++ .....+...+..+.. .++|+++++||+|+..
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~-----------g~~~qt~e~i~~~~~----~~vpiIvviNK~D~~~ 137 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINE-----------GFQPQTIEAINILKR----RKTPFVVAANKIDRIP 137 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCC-----------CCCHhHHHHHHHHHH----cCCCEEEEEECcCCch
Confidence 6799999999999999999999999999999886 111223333332221 3789999999999853
Q ss_pred hhhhhcCCccccccccccCCCCCHHHH----HHHHHHHHhhhc---------cCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 279 EKILYSGRHLRYYLSDFKGPDFDVDSG----ALFIQHKFALRN---------HNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 279 ~k~~~~~~~l~~~fp~y~g~~~~~~~a----~~fi~~~f~~~~---------~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
....+...++ +...........+. ..-+...+.... +.-...+.+..+||++++|+.++...+.
T Consensus 138 ~~~~~~~~~~---~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 138 GWKSTEDAPF---LESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred hhhhhcCchH---HHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 2110000010 00000000111111 111111111110 0112457788999999999998888765
Q ss_pred H
Q psy14891 346 D 346 (359)
Q Consensus 346 ~ 346 (359)
.
T Consensus 215 ~ 215 (586)
T PRK04004 215 G 215 (586)
T ss_pred H
Confidence 3
No 227
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.91 E-value=2.8e-08 Score=104.88 Aligned_cols=111 Identities=17% Similarity=0.125 Sum_probs=73.6
Q ss_pred EEeeCCceeeEEecCCccccccc----------hhhhc--cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRRK----------WIYCF--DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~~----------w~~~f--~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
.+..++.++++||++|+.++... +..|+ +.+|++|+|+|.++ . +..+.++.++..
T Consensus 44 ~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~----------l---er~l~l~~ql~e 110 (772)
T PRK09554 44 QFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------L---ERNLYLTLQLLE 110 (772)
T ss_pred EEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCc----------c---hhhHHHHHHHHH
Confidence 34556788999999999876432 33443 48999999999887 2 223445555543
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
.+.|+++++||+|+.+++- . ..+..+ +.++ ..+.+..+||..+++++
T Consensus 111 ----~giPvIvVlNK~Dl~~~~~------------------i-~id~~~-L~~~---------LG~pVvpiSA~~g~GId 157 (772)
T PRK09554 111 ----LGIPCIVALNMLDIAEKQN------------------I-RIDIDA-LSAR---------LGCPVIPLVSTRGRGIE 157 (772)
T ss_pred ----cCCCEEEEEEchhhhhccC------------------c-HHHHHH-HHHH---------hCCCEEEEEeecCCCHH
Confidence 3689999999999864322 1 111222 2222 23456789999999999
Q ss_pred HHHHHHHHH
Q psy14891 339 TVFHAVMDL 347 (359)
Q Consensus 339 ~vf~~v~~~ 347 (359)
++.+.+.+.
T Consensus 158 eL~~~I~~~ 166 (772)
T PRK09554 158 ALKLAIDRH 166 (772)
T ss_pred HHHHHHHHh
Confidence 888877654
No 228
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.89 E-value=4.2e-08 Score=98.57 Aligned_cols=124 Identities=10% Similarity=-0.038 Sum_probs=71.5
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
-|+-.....+..++..+.+|||+|++.+.+....-...+|++|+|+|..+- . .....+...+...+
T Consensus 93 iTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G-------~-~~qt~~~~~l~~~l------ 158 (474)
T PRK05124 93 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG-------V-LDQTRRHSFIATLL------ 158 (474)
T ss_pred CCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-------c-cccchHHHHHHHHh------
Confidence 344444555666778999999999998855444456899999999998751 0 01111111111111
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~v 340 (359)
...|+++++||+|+....- ...++..+.+......... ...+.++.+||++++||...
T Consensus 159 g~~~iIvvvNKiD~~~~~~------------------~~~~~i~~~l~~~~~~~~~--~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 159 GIKHLVVAVNKMDLVDYSE------------------EVFERIREDYLTFAEQLPG--NLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred CCCceEEEEEeeccccchh------------------HHHHHHHHHHHHHHHhcCC--CCCceEEEEEeecCCCcccc
Confidence 1247899999999863211 1122222222221111100 12356788999999999753
No 229
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.89 E-value=3.2e-08 Score=92.27 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=62.8
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
.-|+......+.+++..+.+|||+|+..+...|..+++.++++|+|+|.++-- .......|..+..
T Consensus 49 giti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-----------~~~t~~~~~~~~~--- 114 (270)
T cd01886 49 GITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-----------EPQTETVWRQADR--- 114 (270)
T ss_pred CcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-----------CHHHHHHHHHHHH---
Confidence 34555556777888999999999999999999999999999999999988621 1223344444432
Q ss_pred CCCCeEEEEeeCCCcch
Q psy14891 262 FREASFILFLNKFDLFR 278 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~ 278 (359)
.++|+++|.||+|+.+
T Consensus 115 -~~~p~ivviNK~D~~~ 130 (270)
T cd01886 115 -YNVPRIAFVNKMDRTG 130 (270)
T ss_pred -cCCCEEEEEECCCCCC
Confidence 3579999999999864
No 230
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.88 E-value=1.6e-08 Score=104.00 Aligned_cols=118 Identities=19% Similarity=0.128 Sum_probs=81.1
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccc------hhhhc--cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHH
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRK------WIYCF--DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQ 255 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~------w~~~f--~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~ 255 (359)
|+......+.+++.++++|||+|+.+++.. +..|+ ++++++++|+|.++. +..+.+..+
T Consensus 28 Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l-------------er~l~l~~q 94 (591)
T TIGR00437 28 TVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL-------------ERNLYLTLQ 94 (591)
T ss_pred EEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc-------------hhhHHHHHH
Confidence 333444566677888999999999987654 45554 378999999998872 223444444
Q ss_pred HHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc
Q psy14891 256 VVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS 335 (359)
Q Consensus 256 i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ 335 (359)
+.. .+.|+++++||+|+.+++- .. .+... +.++ ..+.++.|||++++
T Consensus 95 l~~----~~~PiIIVlNK~Dl~~~~~------------------i~-~d~~~-L~~~---------lg~pvv~tSA~tg~ 141 (591)
T TIGR00437 95 LLE----LGIPMILALNLVDEAEKKG------------------IR-IDEEK-LEER---------LGVPVVPTSATEGR 141 (591)
T ss_pred HHh----cCCCEEEEEehhHHHHhCC------------------Ch-hhHHH-HHHH---------cCCCEEEEECCCCC
Confidence 443 3689999999999865332 11 11111 2221 23567889999999
Q ss_pred hHHHHHHHHHHH
Q psy14891 336 NVQTVFHAVMDL 347 (359)
Q Consensus 336 ni~~vf~~v~~~ 347 (359)
|++++|+.+.+.
T Consensus 142 Gi~eL~~~i~~~ 153 (591)
T TIGR00437 142 GIERLKDAIRKA 153 (591)
T ss_pred CHHHHHHHHHHH
Confidence 999999998765
No 231
>PRK12736 elongation factor Tu; Reviewed
Probab=98.85 E-value=1.1e-07 Score=93.55 Aligned_cols=72 Identities=18% Similarity=0.258 Sum_probs=49.5
Q ss_pred EEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe-EEE
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS-FIL 269 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~-iiL 269 (359)
.+..++..+.++||+|++.|.+....-...++++++|+|.++ .-...+.+.+..+.. .++| +|+
T Consensus 69 ~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~-----------g~~~~t~~~~~~~~~----~g~~~~Iv 133 (394)
T PRK12736 69 EYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD-----------GPMPQTREHILLARQ----VGVPYLVV 133 (394)
T ss_pred EecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCchhHHHHHHHHHH----cCCCEEEE
Confidence 344456778999999998876555555677899999999875 122334444444332 2566 788
Q ss_pred EeeCCCcc
Q psy14891 270 FLNKFDLF 277 (359)
Q Consensus 270 ~~NK~Dl~ 277 (359)
++||+|+.
T Consensus 134 viNK~D~~ 141 (394)
T PRK12736 134 FLNKVDLV 141 (394)
T ss_pred EEEecCCc
Confidence 99999986
No 232
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.81 E-value=9.4e-08 Score=100.46 Aligned_cols=81 Identities=19% Similarity=0.123 Sum_probs=61.6
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+-.....+.+++..+.+|||+|+..+...+..+++.++++|+|+|.++ .. ......+|..+..
T Consensus 61 iti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~----------g~-~~~~~~~~~~~~~---- 125 (689)
T TIGR00484 61 ITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVG----------GV-QPQSETVWRQANR---- 125 (689)
T ss_pred CCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCC----------CC-ChhHHHHHHHHHH----
Confidence 34445556777889999999999999998889999999999999999886 11 1223344444322
Q ss_pred CCCeEEEEeeCCCcch
Q psy14891 263 REASFILFLNKFDLFR 278 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~ 278 (359)
.++|+++++||+|+..
T Consensus 126 ~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 126 YEVPRIAFVNKMDKTG 141 (689)
T ss_pred cCCCEEEEEECCCCCC
Confidence 3579999999999864
No 233
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.79 E-value=7.2e-08 Score=97.87 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=58.0
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+......+..++..+.+|||+|+..+......+++.++++|+|+|.++- -......+|+ ++.. .
T Consensus 67 si~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~~t~~l~~-~~~~---~ 131 (527)
T TIGR00503 67 SITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG-----------VETRTRKLME-VTRL---R 131 (527)
T ss_pred cEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC-----------CCHHHHHHHH-HHHh---c
Confidence 44444566778899999999999998877666678999999999998861 1112233443 3332 4
Q ss_pred CCeEEEEeeCCCcc
Q psy14891 264 EASFILFLNKFDLF 277 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~ 277 (359)
++|+++|+||+|+.
T Consensus 132 ~~PiivviNKiD~~ 145 (527)
T TIGR00503 132 DTPIFTFMNKLDRD 145 (527)
T ss_pred CCCEEEEEECcccc
Confidence 68999999999985
No 234
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.75 E-value=2.2e-07 Score=92.60 Aligned_cols=132 Identities=13% Similarity=0.030 Sum_probs=79.5
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
.-|+.+....|..++..+.+.|++|++.|.+.....+..++++|+|+|.++ -..|.. ........+.+.-. ..
T Consensus 70 GiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~---G~~e~g-~~~~~qT~eh~~~~-~~-- 142 (447)
T PLN00043 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT---GGFEAG-ISKDGQTREHALLA-FT-- 142 (447)
T ss_pred CceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc---Cceecc-cCCCchHHHHHHHH-HH--
Confidence 345555556677778899999999999998888888999999999999886 000100 00001222222222 11
Q ss_pred CCCC-eEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 262 FREA-SFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 262 ~~~~-~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
.++ ++|++.||+|+..... .. ..+++..+-+...+....-. ...+.+..+||.+|+||.
T Consensus 143 -~gi~~iIV~vNKmD~~~~~~--------------~~--~~~~~i~~ei~~~l~~~g~~-~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 143 -LGVKQMICCCNKMDATTPKY--------------SK--ARYDEIVKEVSSYLKKVGYN-PDKIPFVPISGFEGDNMI 202 (447)
T ss_pred -cCCCcEEEEEEcccCCchhh--------------hH--HHHHHHHHHHHHHHHHcCCC-cccceEEEEecccccccc
Confidence 244 5788999999752111 00 12333333343333322211 134678899999999985
No 235
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.74 E-value=1.2e-06 Score=85.40 Aligned_cols=125 Identities=15% Similarity=0.227 Sum_probs=85.9
Q ss_pred eeEEEEeeCCceeeEEecCCccccccchh--hh---------ccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHH
Q psy14891 187 IIETNFRLGESIVNMVDVGGQRSQRRKWI--YC---------FDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQ 255 (359)
Q Consensus 187 ~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~--~~---------f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~ 255 (359)
.....+++++.++.+.||+|-++-.+... .+ .+.++.|++|+|.++ .-.+.-+....-
T Consensus 216 ~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~-----------~~~~qD~~ia~~ 284 (444)
T COG1160 216 SIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATE-----------GISEQDLRIAGL 284 (444)
T ss_pred ceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCC-----------CchHHHHHHHHH
Confidence 44566777899999999999876544443 12 346899999999886 222223333444
Q ss_pred HHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc
Q psy14891 256 VVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS 335 (359)
Q Consensus 256 i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ 335 (359)
+.+ .+.+++++.||.|+.++.- ...++..+-+..+|.-+ .-...|++||+.+.
T Consensus 285 i~~----~g~~~vIvvNKWDl~~~~~------------------~~~~~~k~~i~~~l~~l-----~~a~i~~iSA~~~~ 337 (444)
T COG1160 285 IEE----AGRGIVIVVNKWDLVEEDE------------------ATMEEFKKKLRRKLPFL-----DFAPIVFISALTGQ 337 (444)
T ss_pred HHH----cCCCeEEEEEccccCCchh------------------hHHHHHHHHHHHHhccc-----cCCeEEEEEecCCC
Confidence 433 4678999999999877532 34455555566655433 23456899999999
Q ss_pred hHHHHHHHHHHHHH
Q psy14891 336 NVQTVFHAVMDLVI 349 (359)
Q Consensus 336 ni~~vf~~v~~~Il 349 (359)
++..+|+++.+..-
T Consensus 338 ~i~~l~~~i~~~~~ 351 (444)
T COG1160 338 GLDKLFEAIKEIYE 351 (444)
T ss_pred ChHHHHHHHHHHHH
Confidence 99999999987653
No 236
>KOG1707|consensus
Probab=98.73 E-value=3.3e-08 Score=97.95 Aligned_cols=117 Identities=19% Similarity=0.154 Sum_probs=80.6
Q ss_pred eeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC--CCCCeEEEEeeCCCc
Q psy14891 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY--FREASFILFLNKFDL 276 (359)
Q Consensus 199 l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~--~~~~~iiL~~NK~Dl 276 (359)
..|.|++..+..|-.-.+=.+.+++|..|+++++ ...++.....|--.++... ..++||||+|||+|+
T Consensus 58 t~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~----------~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~ 127 (625)
T KOG1707|consen 58 TSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDD----------ESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDN 127 (625)
T ss_pred eEEEecccccchhHHHHHHHhhcCEEEEEEecCC----------hHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCC
Confidence 4578888555544444666899999999999987 4445544444444444432 268999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
..... ++.+.-..=|...|.++.+ ++.+||+.-.|+.++|....+.|+.
T Consensus 128 ~~~~~------------------~s~e~~~~pim~~f~EiEt-------ciecSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 128 GDNEN------------------NSDEVNTLPIMIAFAEIET-------CIECSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred ccccc------------------cchhHHHHHHHHHhHHHHH-------HHhhhhhhhhhhHhhhhhhhheeec
Confidence 65433 2233334445566655432 4679999999999999999888764
No 237
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.73 E-value=3.6e-07 Score=89.94 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=48.5
Q ss_pred EEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE-E
Q psy14891 190 TNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF-I 268 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i-i 268 (359)
..+..++..+.+|||+|++.|.+....-...++++++|+|..+ .-...+.+.+..+... ++|. +
T Consensus 68 ~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~e~l~~~~~~----gi~~iI 132 (394)
T TIGR00485 68 VEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATD-----------GPMPQTREHILLARQV----GVPYIV 132 (394)
T ss_pred EEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHHc----CCCEEE
Confidence 3444456788999999998876444434456799999999875 1223344444444322 4564 5
Q ss_pred EEeeCCCcch
Q psy14891 269 LFLNKFDLFR 278 (359)
Q Consensus 269 L~~NK~Dl~~ 278 (359)
+++||+|+..
T Consensus 133 vvvNK~Dl~~ 142 (394)
T TIGR00485 133 VFLNKCDMVD 142 (394)
T ss_pred EEEEecccCC
Confidence 7899999864
No 238
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.73 E-value=2.8e-07 Score=91.90 Aligned_cols=131 Identities=14% Similarity=0.056 Sum_probs=78.5
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+-+....+..++..+.+.|++|++.|-+-.......+|++|+|+|.++ -..|-. ...-..+.+.+..+.. .
T Consensus 72 Tid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~---G~~e~~-~~~~~qT~eh~~~~~~----~ 143 (446)
T PTZ00141 72 TIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTA---GEFEAG-ISKDGQTREHALLAFT----L 143 (446)
T ss_pred eEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCC---Cceecc-cCCCccHHHHHHHHHH----c
Confidence 4444445566778899999999999997777777889999999999875 000000 0000122333332211 2
Q ss_pred CCe-EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHH
Q psy14891 264 EAS-FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQT 339 (359)
Q Consensus 264 ~~~-iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~ 339 (359)
++| +|++.||+|...-.. .. ..+++..+-+...|....-. ...+.+..+||.+++||..
T Consensus 144 gi~~iiv~vNKmD~~~~~~--------------~~--~~~~~i~~~i~~~l~~~g~~-~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 144 GVKQMIVCINKMDDKTVNY--------------SQ--ERYDEIKKEVSAYLKKVGYN-PEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CCCeEEEEEEccccccchh--------------hH--HHHHHHHHHHHHHHHhcCCC-cccceEEEeecccCCCccc
Confidence 444 789999999532100 00 23445555555554433211 1357888999999999853
No 239
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.73 E-value=1.2e-07 Score=93.47 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=53.4
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
-|+-.....+..++.++.++||+|++.|-+....-...+|++|+|+|.++ .-.....+.+.-+ .. .
T Consensus 66 iTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~-----------G~~~qt~~~~~~~-~~--~ 131 (406)
T TIGR02034 66 ITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARK-----------GVLEQTRRHSYIA-SL--L 131 (406)
T ss_pred cCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCccccHHHHHHH-HH--c
Confidence 34445556666778899999999999885544455688999999999875 1111122222211 11 1
Q ss_pred CCCeEEEEeeCCCcch
Q psy14891 263 REASFILFLNKFDLFR 278 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~ 278 (359)
...++++++||+|+..
T Consensus 132 ~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 132 GIRHVVLAVNKMDLVD 147 (406)
T ss_pred CCCcEEEEEEeccccc
Confidence 2346899999999853
No 240
>PRK12735 elongation factor Tu; Reviewed
Probab=98.72 E-value=4.4e-07 Score=89.33 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=47.8
Q ss_pred EEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEE-
Q psy14891 190 TNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFI- 268 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ii- 268 (359)
..+..++..+.++||+|++.|-+....-..++|++++|+|..+ .-.....+.+..+.. .++|.+
T Consensus 68 ~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~-----------g~~~qt~e~l~~~~~----~gi~~ii 132 (396)
T PRK12735 68 VEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ----VGVPYIV 132 (396)
T ss_pred eEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-----------CCchhHHHHHHHHHH----cCCCeEE
Confidence 3344456678999999998775444444567899999999875 112223334433322 246754
Q ss_pred EEeeCCCcch
Q psy14891 269 LFLNKFDLFR 278 (359)
Q Consensus 269 L~~NK~Dl~~ 278 (359)
+++||+|+..
T Consensus 133 vvvNK~Dl~~ 142 (396)
T PRK12735 133 VFLNKCDMVD 142 (396)
T ss_pred EEEEecCCcc
Confidence 6799999863
No 241
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.71 E-value=4e-07 Score=80.91 Aligned_cols=122 Identities=11% Similarity=0.055 Sum_probs=65.8
Q ss_pred eeeEEecCCccccccchhhh-----ccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEee
Q psy14891 198 IVNMVDVGGQRSQRRKWIYC-----FDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLN 272 (359)
Q Consensus 198 ~l~i~D~~Gq~~~r~~w~~~-----f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~N 272 (359)
.+.+||++|.......-..| +.+++.+++|.+ .++.+.-..+...+.. .+.|+++|+|
T Consensus 53 ~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--------------~~~~~~d~~~~~~l~~---~~~~~ilV~n 115 (197)
T cd04104 53 NVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--------------TRFSSNDVKLAKAIQC---MGKKFYFVRT 115 (197)
T ss_pred CceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--------------CCCCHHHHHHHHHHHH---hCCCEEEEEe
Confidence 57899999986432222233 677888888743 2333343333334433 1579999999
Q ss_pred CCCcch--hhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCC-CCceEEEEeeccC--CchHHHHHHHHHHH
Q psy14891 273 KFDLFR--EKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNS-AKVIYPHFTTATD--TSNVQTVFHAVMDL 347 (359)
Q Consensus 273 K~Dl~~--~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~-~~~i~~~~tsA~d--~~ni~~vf~~v~~~ 347 (359)
|+|+.. ++. .. + . . ...++..+.++++..+..... ...-.++.+|+.+ +-++..+.+++...
T Consensus 116 K~D~~~~~~~~--~~-~------~---~-~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~ 182 (197)
T cd04104 116 KVDRDLSNEQR--SK-P------R---S-FNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKD 182 (197)
T ss_pred cccchhhhhhc--cc-c------c---c-ccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHH
Confidence 999843 211 00 0 0 0 123445555555544433211 1223467799984 56666666555555
Q ss_pred HH
Q psy14891 348 VI 349 (359)
Q Consensus 348 Il 349 (359)
+-
T Consensus 183 l~ 184 (197)
T cd04104 183 LP 184 (197)
T ss_pred hh
Confidence 43
No 242
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.69 E-value=2.2e-07 Score=84.13 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=54.1
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+..+.+|||+|++.|......+++.++++|+|+|.++ .-.......+..... .++|++|++||+|
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~-----------g~~~~t~~~l~~~~~----~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVE-----------GVCVQTETVLRQALK----ERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCC-----------CCCHHHHHHHHHHHH----cCCCEEEEEECCC
Confidence 5789999999999999888999999999999999986 123344555555443 3579999999999
Q ss_pred cch
Q psy14891 276 LFR 278 (359)
Q Consensus 276 l~~ 278 (359)
+..
T Consensus 137 ~~~ 139 (222)
T cd01885 137 RLI 139 (222)
T ss_pred cch
Confidence 863
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=98.69 E-value=4.6e-07 Score=90.95 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=53.5
Q ss_pred eEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe-
Q psy14891 188 IETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS- 266 (359)
Q Consensus 188 ~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~- 266 (359)
....|..++..+.++|++|++.|-+-...-...+|++|+|+|..+ .-...+.+.+..+.. .++|
T Consensus 135 ~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~-----------G~~~qt~e~~~~~~~----~gi~~ 199 (478)
T PLN03126 135 ATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGAD-----------GPMPQTKEHILLAKQ----VGVPN 199 (478)
T ss_pred EEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCe
Confidence 344555677889999999999886555555678899999999886 122344455544332 2566
Q ss_pred EEEEeeCCCcch
Q psy14891 267 FILFLNKFDLFR 278 (359)
Q Consensus 267 iiL~~NK~Dl~~ 278 (359)
++++.||+|+..
T Consensus 200 iIvvvNK~Dl~~ 211 (478)
T PLN03126 200 MVVFLNKQDQVD 211 (478)
T ss_pred EEEEEecccccC
Confidence 788999999854
No 244
>KOG1532|consensus
Probab=98.67 E-value=1.7e-07 Score=85.30 Aligned_cols=106 Identities=17% Similarity=0.230 Sum_probs=56.4
Q ss_pred CcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCcccccccccc---C
Q psy14891 221 VKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFK---G 297 (359)
Q Consensus 221 ~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~---g 297 (359)
..+|+||+|... ..+...+-..+- -.|.--.-.+.|+|+++||+|+..... . ..+..||. .
T Consensus 148 ptvv~YvvDt~r-------s~~p~tFMSNMl---YAcSilyktklp~ivvfNK~Dv~d~~f--a----~eWm~DfE~Fqe 211 (366)
T KOG1532|consen 148 PTVVVYVVDTPR-------STSPTTFMSNML---YACSILYKTKLPFIVVFNKTDVSDSEF--A----LEWMTDFEAFQE 211 (366)
T ss_pred CeEEEEEecCCc-------CCCchhHHHHHH---HHHHHHHhccCCeEEEEecccccccHH--H----HHHHHHHHHHHH
Confidence 478999999765 111222222222 222222335789999999999865433 1 11111221 1
Q ss_pred CC--------CCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 298 PD--------FDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 298 ~~--------~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
.. .+...........|. +.+-..-+||.+|.+....|.+|...+=
T Consensus 212 Al~~~~~~y~s~l~~SmSL~leeFY-------~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 212 ALNEAESSYMSNLTRSMSLMLEEFY-------RSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred HHHhhccchhHHhhhhHHHHHHHHH-------hhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 00 011112222222222 3455566899999999999999877653
No 245
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.66 E-value=2.7e-07 Score=96.13 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=52.2
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+-.....+..++..+.++||+|++.+-+.-..-...+|++|+|+|.++- ......+...+.... .
T Consensus 91 Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g--------~~~~t~e~~~~~~~~------~ 156 (632)
T PRK05506 91 TIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG--------VLTQTRRHSFIASLL------G 156 (632)
T ss_pred CceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC--------ccccCHHHHHHHHHh------C
Confidence 44344456666788899999999988755444556789999999998651 011111222222111 2
Q ss_pred CCeEEEEeeCCCcch
Q psy14891 264 EASFILFLNKFDLFR 278 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~ 278 (359)
..++++++||+|+.+
T Consensus 157 ~~~iivvvNK~D~~~ 171 (632)
T PRK05506 157 IRHVVLAVNKMDLVD 171 (632)
T ss_pred CCeEEEEEEeccccc
Confidence 357899999999853
No 246
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.64 E-value=1.4e-07 Score=86.81 Aligned_cols=96 Identities=11% Similarity=0.147 Sum_probs=66.0
Q ss_pred cccccchhhhccCCcEEEEEEECCCCccccccCCccc-chHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCC
Q psy14891 208 RSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVN-RLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGR 286 (359)
Q Consensus 208 ~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~-~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~ 286 (359)
++++.+...|+++++++++|+|+++ .. ++.....|+. .+.. .++|++|++||+||..++.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~----------p~~s~~~l~r~l~-~~~~---~~i~~vIV~NK~DL~~~~~----- 84 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVL----------PELSLNQLDRFLV-VAEA---QNIEPIIVLNKIDLLDDED----- 84 (245)
T ss_pred cccceEECcccccCCEEEEEEECCC----------CCCCHHHHHHHHH-HHHH---CCCCEEEEEECcccCCCHH-----
Confidence 5777888889999999999999997 34 3433333333 3332 5789999999999864322
Q ss_pred ccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 287 HLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 287 ~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
...+.+. .|.. ..+.+++|||++++||+++|+.+.+
T Consensus 85 -------------~~~~~~~-----~~~~------~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 85 -------------MEKEQLD-----IYRN------IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred -------------HHHHHHH-----HHHH------CCCeEEEEecCCchhHHHHHhhhcC
Confidence 1111222 2221 2355788999999999999988764
No 247
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.63 E-value=8.8e-07 Score=86.47 Aligned_cols=119 Identities=24% Similarity=0.212 Sum_probs=76.8
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccc--------hhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHH
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRK--------WIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFE 254 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~--------w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~ 254 (359)
.|.-+.+..+.++|+++++.||+|-|.-... -..-.+.+|.|+||+|.+.. -..+-...++
T Consensus 251 TTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~-----------~~~~d~~~~~ 319 (454)
T COG0486 251 TTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP-----------LDKEDLALIE 319 (454)
T ss_pred CccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-----------CchhhHHHHH
Confidence 3555788899999999999999998742221 12345889999999999871 1111222333
Q ss_pred HHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCC
Q psy14891 255 QVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDT 334 (359)
Q Consensus 255 ~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~ 334 (359)
....+.|+++|.||.||..+.. ...+ .. ........+||+++
T Consensus 320 -----~~~~~~~~i~v~NK~DL~~~~~---~~~~-----~~-------------------------~~~~~~i~iSa~t~ 361 (454)
T COG0486 320 -----LLPKKKPIIVVLNKADLVSKIE---LESE-----KL-------------------------ANGDAIISISAKTG 361 (454)
T ss_pred -----hcccCCCEEEEEechhcccccc---cchh-----hc-------------------------cCCCceEEEEecCc
Confidence 2345789999999999976322 0000 00 01124566888888
Q ss_pred chHHHHHHHHHHHHHH
Q psy14891 335 SNVQTVFHAVMDLVIK 350 (359)
Q Consensus 335 ~ni~~vf~~v~~~Il~ 350 (359)
+++..+-+++...+..
T Consensus 362 ~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 362 EGLDALREAIKQLFGK 377 (454)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 8888777777665543
No 248
>PRK12739 elongation factor G; Reviewed
Probab=98.61 E-value=8.3e-07 Score=93.37 Aligned_cols=81 Identities=16% Similarity=0.087 Sum_probs=61.8
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
-|+-.....+.+++..+.++||+|+..+...|...++.+|++|+|+|.++ . -.......|..+..
T Consensus 59 iti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~----------g-~~~qt~~i~~~~~~---- 123 (691)
T PRK12739 59 ITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVS----------G-VEPQSETVWRQADK---- 123 (691)
T ss_pred CCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCC----------C-CCHHHHHHHHHHHH----
Confidence 35555556777889999999999999888889999999999999999876 1 11223344554433
Q ss_pred CCCeEEEEeeCCCcch
Q psy14891 263 REASFILFLNKFDLFR 278 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~ 278 (359)
.+.|++++.||+|+..
T Consensus 124 ~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 124 YGVPRIVFVNKMDRIG 139 (691)
T ss_pred cCCCEEEEEECCCCCC
Confidence 3579999999999875
No 249
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.57 E-value=7.3e-07 Score=83.45 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=50.0
Q ss_pred cccceeEE--EEeeCC--ceeeEEecCC--------------------------ccccccchhhhccC--CcEEEEEEEC
Q psy14891 183 RTNGIIET--NFRLGE--SIVNMVDVGG--------------------------QRSQRRKWIYCFDD--VKAVLYVVAL 230 (359)
Q Consensus 183 ~T~G~~~~--~~~~~~--~~l~i~D~~G--------------------------q~~~r~~w~~~f~~--~~~iifv~dl 230 (359)
+|+++... .+..++ +++++|||+| ++..+..+..++.+ +++++|+++.
T Consensus 45 ~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~ 124 (276)
T cd01850 45 KTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEP 124 (276)
T ss_pred CceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeC
Confidence 34444333 333344 6799999999 33333344355554 6788888886
Q ss_pred CCCccccccCCcccchHHH-HHHHHHHHhccCCCCCeEEEEeeCCCcch
Q psy14891 231 SGYDMTLLEDSSVNRLDES-LNLFEQVVNNRYFREASFILFLNKFDLFR 278 (359)
Q Consensus 231 s~yd~~l~ed~~~~~l~es-~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~ 278 (359)
+. ..+... ++.++.+.. .+|+++++||+|+..
T Consensus 125 ~~-----------~~l~~~D~~~lk~l~~-----~v~vi~VinK~D~l~ 157 (276)
T cd01850 125 TG-----------HGLKPLDIEFMKRLSK-----RVNIIPVIAKADTLT 157 (276)
T ss_pred CC-----------CCCCHHHHHHHHHHhc-----cCCEEEEEECCCcCC
Confidence 64 223222 566666642 589999999999854
No 250
>CHL00071 tufA elongation factor Tu
Probab=98.56 E-value=8.8e-07 Score=87.58 Aligned_cols=114 Identities=12% Similarity=0.095 Sum_probs=69.3
Q ss_pred EEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe-E
Q psy14891 189 ETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS-F 267 (359)
Q Consensus 189 ~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~-i 267 (359)
...+..++..+.+.||+|++.+-+....-...+|++++|+|... .-.....+.+..+.. .+.| +
T Consensus 67 ~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~qt~~~~~~~~~----~g~~~i 131 (409)
T CHL00071 67 HVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTKEHILLAKQ----VGVPNI 131 (409)
T ss_pred EEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cCCCEE
Confidence 34455566788899999998775555556678999999999875 112334444444322 2467 7
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
|++.||+|+....- ..+...+-+...+....-. ...+.+.+.||.++.|+
T Consensus 132 IvvvNK~D~~~~~~-------------------~~~~~~~~l~~~l~~~~~~-~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 132 VVFLNKEDQVDDEE-------------------LLELVELEVRELLSKYDFP-GDDIPIVSGSALLALEA 181 (409)
T ss_pred EEEEEccCCCCHHH-------------------HHHHHHHHHHHHHHHhCCC-CCcceEEEcchhhcccc
Confidence 78999999864211 1122222333333222211 23467788999988764
No 251
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.52 E-value=1.3e-06 Score=90.44 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=73.9
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe-EEEEeeC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS-FILFLNK 273 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~-iiL~~NK 273 (359)
++..+.+|||+|++.|-+.....+.++|++++|+|..+ .-+..+.+.+.- +.. .++| +++++||
T Consensus 49 ~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~e-----------g~~~qT~ehl~i-l~~---lgi~~iIVVlNK 113 (614)
T PRK10512 49 DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDD-----------GVMAQTREHLAI-LQL---TGNPMLTVALTK 113 (614)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCC-----------CCcHHHHHHHHH-HHH---cCCCeEEEEEEC
Confidence 34678999999999996666667899999999999875 222333333332 221 1344 6799999
Q ss_pred CCcchh-hhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 274 FDLFRE-KILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 274 ~Dl~~~-k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
+|+..+ ++ +...+-+.+.+.... -..+.++.+||++++||..+++.+.+..
T Consensus 114 iDlv~~~~~---------------------~~v~~ei~~~l~~~~---~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 114 ADRVDEARI---------------------AEVRRQVKAVLREYG---FAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred CccCCHHHH---------------------HHHHHHHHHHHHhcC---CCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 998642 22 112222222221111 1234567899999999999999887543
No 252
>PRK00049 elongation factor Tu; Reviewed
Probab=98.51 E-value=4.4e-06 Score=82.29 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=66.5
Q ss_pred EEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEE
Q psy14891 189 ETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFI 268 (359)
Q Consensus 189 ~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ii 268 (359)
...+..++..+.+.||+|++.+-+-...-...+|++++|+|..+ .-.....+.+..+.. .+.|++
T Consensus 67 ~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~-----------g~~~qt~~~~~~~~~----~g~p~i 131 (396)
T PRK00049 67 HVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ----VGVPYI 131 (396)
T ss_pred EEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC-----------CCchHHHHHHHHHHH----cCCCEE
Confidence 33444456778899999998775444445688999999999875 112333444443332 246765
Q ss_pred -EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCch
Q psy14891 269 -LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSN 336 (359)
Q Consensus 269 -L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~n 336 (359)
++.||+|+..+.- ..+...+.+.+.+..+.-. ...+.+..+||.++.|
T Consensus 132 iVvvNK~D~~~~~~-------------------~~~~~~~~i~~~l~~~~~~-~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 132 VVFLNKCDMVDDEE-------------------LLELVEMEVRELLSKYDFP-GDDTPIIRGSALKALE 180 (396)
T ss_pred EEEEeecCCcchHH-------------------HHHHHHHHHHHHHHhcCCC-ccCCcEEEeecccccC
Confidence 6899999863111 1222233343333332211 2346677899998753
No 253
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.50 E-value=1.9e-06 Score=76.55 Aligned_cols=120 Identities=11% Similarity=0.102 Sum_probs=75.3
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+......++.++..+.+.||+|+..+-.-.......++++++|+|.+. .-.......+..+.. .
T Consensus 52 Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~-----------g~~~~~~~~~~~~~~----~ 116 (195)
T cd01884 52 TINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD-----------GPMPQTREHLLLARQ----V 116 (195)
T ss_pred cEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----c
Confidence 4444445566667889999999998776655666788999999999875 111233344444332 2
Q ss_pred CCe-EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 264 EAS-FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 264 ~~~-iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
+.| +|++.||+|+..+.- -.+...+.+.+.+..+.-+ ...+.++++||.++.|+.
T Consensus 117 ~~~~iIvviNK~D~~~~~~-------------------~~~~~~~~i~~~l~~~g~~-~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 117 GVPYIVVFLNKADMVDDEE-------------------LLELVEMEVRELLSKYGFD-GDNTPIVRGSALKALEGD 172 (195)
T ss_pred CCCcEEEEEeCCCCCCcHH-------------------HHHHHHHHHHHHHHHhccc-ccCCeEEEeeCccccCCC
Confidence 355 789999999853111 1222334444444332211 245888999999999863
No 254
>KOG3886|consensus
Probab=98.46 E-value=3.6e-07 Score=81.18 Aligned_cols=71 Identities=24% Similarity=0.508 Sum_probs=51.9
Q ss_pred CCceeeEEecCCcccc-----ccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHH----HHhccCCCCC
Q psy14891 195 GESIVNMVDVGGQRSQ-----RRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQ----VVNNRYFREA 265 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~-----r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~----i~~~~~~~~~ 265 (359)
+++-+.+||.|||+.+ +..-.+-|++++++|+|+|++. +.+..-+..+++ ++.+ .+.+
T Consensus 51 Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves-----------~e~~~D~~~yqk~Le~ll~~--SP~A 117 (295)
T KOG3886|consen 51 GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVES-----------REMEKDFHYYQKCLEALLQN--SPEA 117 (295)
T ss_pred hhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccc-----------hhhhhhHHHHHHHHHHHHhc--CCcc
Confidence 3478999999999853 3344567999999999999997 444444555544 4443 3567
Q ss_pred eEEEEeeCCCcch
Q psy14891 266 SFILFLNKFDLFR 278 (359)
Q Consensus 266 ~iiL~~NK~Dl~~ 278 (359)
.+..+..|.|+..
T Consensus 118 kiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 118 KIFCLLHKMDLVQ 130 (295)
T ss_pred eEEEEEeechhcc
Confidence 7888999999864
No 255
>PRK12740 elongation factor G; Reviewed
Probab=98.45 E-value=1.4e-06 Score=91.59 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=65.8
Q ss_pred cccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc
Q psy14891 181 RVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR 260 (359)
Q Consensus 181 r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~ 260 (359)
|..|++.....+.+++..+.+|||+|+..+...|..+++.+|++|+|+|.++- . .......|..+..
T Consensus 44 rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~----------~-~~~~~~~~~~~~~-- 110 (668)
T PRK12740 44 RGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGG----------V-EPQTETVWRQAEK-- 110 (668)
T ss_pred cCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCC----------c-CHHHHHHHHHHHH--
Confidence 45677877788888999999999999998888899999999999999999871 1 2233445554433
Q ss_pred CCCCCeEEEEeeCCCcch
Q psy14891 261 YFREASFILFLNKFDLFR 278 (359)
Q Consensus 261 ~~~~~~iiL~~NK~Dl~~ 278 (359)
.+.|+++|+||+|+..
T Consensus 111 --~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 111 --YGVPRIIFVNKMDRAG 126 (668)
T ss_pred --cCCCEEEEEECCCCCC
Confidence 3679999999999864
No 256
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.40 E-value=1.4e-06 Score=92.09 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=53.1
Q ss_pred EeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEe
Q psy14891 192 FRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFL 271 (359)
Q Consensus 192 ~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~ 271 (359)
+..++..+.+|||+|+..|.......++.+|++|+|+|..+ .-..++...+....+ .+.|+++|+
T Consensus 81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~-----------g~~~~t~~~~~~~~~----~~~p~ivvi 145 (720)
T TIGR00490 81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVE-----------GVMPQTETVLRQALK----ENVKPVLFI 145 (720)
T ss_pred ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCC-----------CCCccHHHHHHHHHH----cCCCEEEEE
Confidence 34456889999999999988777888999999999999875 111233444444333 246788999
Q ss_pred eCCCcch
Q psy14891 272 NKFDLFR 278 (359)
Q Consensus 272 NK~Dl~~ 278 (359)
||+|...
T Consensus 146 NKiD~~~ 152 (720)
T TIGR00490 146 NKVDRLI 152 (720)
T ss_pred EChhccc
Confidence 9999864
No 257
>KOG0462|consensus
Probab=98.38 E-value=4.5e-06 Score=82.51 Aligned_cols=128 Identities=19% Similarity=0.183 Sum_probs=94.6
Q ss_pred cccccccceeEEEEeeCC---ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHH
Q psy14891 179 RARVRTNGIIETNFRLGE---SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQ 255 (359)
Q Consensus 179 ~~r~~T~G~~~~~~~~~~---~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~ 255 (359)
|-|--|+--....+-+++ +.+++.||+|+-.|+---...+.-|+|+|+|||.+. --....+..|..
T Consensus 104 RERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~q-----------GvqAQT~anf~l 172 (650)
T KOG0462|consen 104 RERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQ-----------GVQAQTVANFYL 172 (650)
T ss_pred hhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCc-----------CchHHHHHHHHH
Confidence 334445554444555554 899999999999998777777888999999999886 344555555555
Q ss_pred HHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc
Q psy14891 256 VVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS 335 (359)
Q Consensus 256 i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ 335 (359)
... .+..+|.|+||+|+..+ +++.+..-+.+.|.... -.+.++|||.|.
T Consensus 173 Afe----~~L~iIpVlNKIDlp~a---------------------dpe~V~~q~~~lF~~~~------~~~i~vSAK~G~ 221 (650)
T KOG0462|consen 173 AFE----AGLAIIPVLNKIDLPSA---------------------DPERVENQLFELFDIPP------AEVIYVSAKTGL 221 (650)
T ss_pred HHH----cCCeEEEeeeccCCCCC---------------------CHHHHHHHHHHHhcCCc------cceEEEEeccCc
Confidence 444 35678999999999763 55777777777775432 135669999999
Q ss_pred hHHHHHHHHHHHH
Q psy14891 336 NVQTVFHAVMDLV 348 (359)
Q Consensus 336 ni~~vf~~v~~~I 348 (359)
|+.+++++|.+.|
T Consensus 222 ~v~~lL~AII~rV 234 (650)
T KOG0462|consen 222 NVEELLEAIIRRV 234 (650)
T ss_pred cHHHHHHHHHhhC
Confidence 9999999998876
No 258
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.38 E-value=5.2e-06 Score=66.93 Aligned_cols=67 Identities=25% Similarity=0.443 Sum_probs=43.3
Q ss_pred EEEeeCCceeeEEecCCcccc--c-------cchhhhccCCcEEEEEEECCCCccccccCCcccchHH-HHHHHHHHHhc
Q psy14891 190 TNFRLGESIVNMVDVGGQRSQ--R-------RKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDE-SLNLFEQVVNN 259 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~~--r-------~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~e-s~~~~~~i~~~ 259 (359)
..+.+.+..+.++||+|-... . .......+.+++++||+|.++ ...+ ..++++.+ +
T Consensus 40 ~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l-~- 105 (116)
T PF01926_consen 40 GQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASN------------PITEDDKNILREL-K- 105 (116)
T ss_dssp EEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHH-H-
T ss_pred eeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHH-h-
Confidence 445567788899999996421 1 112233478999999999554 2222 23333444 2
Q ss_pred cCCCCCeEEEEeeC
Q psy14891 260 RYFREASFILFLNK 273 (359)
Q Consensus 260 ~~~~~~~iiL~~NK 273 (359)
.+.|+++++||
T Consensus 106 ---~~~~~i~v~NK 116 (116)
T PF01926_consen 106 ---NKKPIILVLNK 116 (116)
T ss_dssp ---TTSEEEEEEES
T ss_pred ---cCCCEEEEEcC
Confidence 57899999998
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.38 E-value=7.5e-06 Score=72.54 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=50.5
Q ss_pred eEEEEeeCCceeeEEecCCccccc-----------cchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHH
Q psy14891 188 IETNFRLGESIVNMVDVGGQRSQR-----------RKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQV 256 (359)
Q Consensus 188 ~~~~~~~~~~~l~i~D~~Gq~~~r-----------~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i 256 (359)
......+++..+.++||+|-.... +.+..+..+++++|||+++..+ ...-...++++.++
T Consensus 40 ~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~---------t~~d~~~l~~l~~~ 110 (196)
T cd01852 40 QKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF---------TEEEEQAVETLQEL 110 (196)
T ss_pred ceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc---------CHHHHHHHHHHHHH
Confidence 334445577889999999954321 1122335789999999998763 22334556666666
Q ss_pred HhccCCCCCeEEEEeeCCCcch
Q psy14891 257 VNNRYFREASFILFLNKFDLFR 278 (359)
Q Consensus 257 ~~~~~~~~~~iiL~~NK~Dl~~ 278 (359)
+.... -.++++++|+.|...
T Consensus 111 fg~~~--~~~~ivv~T~~d~l~ 130 (196)
T cd01852 111 FGEKV--LDHTIVLFTRGDDLE 130 (196)
T ss_pred hChHh--HhcEEEEEECccccC
Confidence 54322 136788889988543
No 260
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.38 E-value=5.8e-06 Score=69.18 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=64.4
Q ss_pred EEecCCccccccchhhh----ccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 201 MVDVGGQRSQRRKWIYC----FDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 201 i~D~~Gq~~~r~~w~~~----f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.||+|---+.+.+.+. -.+|+.|++|.|.++-.. .+.- -|.. .| +.|+|=|.||+|+
T Consensus 40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~---------~~pP---~fa~-----~f-~~pvIGVITK~Dl 101 (143)
T PF10662_consen 40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRS---------VFPP---GFAS-----MF-NKPVIGVITKIDL 101 (143)
T ss_pred EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCc---------cCCc---hhhc-----cc-CCCEEEEEECccC
Confidence 47888865554444332 258999999999997111 1100 0111 12 5799999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
.... .+.+.|.++++.- .-+.+ +.+||.++++|+++.+.+.
T Consensus 102 ~~~~-------------------~~i~~a~~~L~~a-------G~~~i--f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 102 PSDD-------------------ANIERAKKWLKNA-------GVKEI--FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred ccch-------------------hhHHHHHHHHHHc-------CCCCe--EEEECCCCcCHHHHHHHHh
Confidence 8321 2456777777762 12344 7899999999999988764
No 261
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=3e-06 Score=81.47 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=84.9
Q ss_pred ccccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCC--cccchHHHHHHHHHHH
Q psy14891 180 ARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDS--SVNRLDESLNLFEQVV 257 (359)
Q Consensus 180 ~r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~--~~~~l~es~~~~~~i~ 257 (359)
.|-.|+-+....|+.+...|.|.|+.|++.|-+.-..=...+|+.|+|+|.+.. + +|-. ......|..-+-..
T Consensus 68 erGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~-e--fE~g~~~~gQtrEH~~La~t-- 142 (428)
T COG5256 68 ERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG-E--FEAGFGVGGQTREHAFLART-- 142 (428)
T ss_pred hcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC-c--cccccccCCchhHHHHHHHh--
Confidence 345677777888888889999999999999988878778889999999999861 0 0000 11122222222222
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
+.-..+|++.||+|+..=.. ..+++..+-+.. +.....-....+.+..+||..|+|+
T Consensus 143 ----lGi~~lIVavNKMD~v~wde------------------~rf~ei~~~v~~-l~k~~G~~~~~v~FIPiSg~~G~Nl 199 (428)
T COG5256 143 ----LGIKQLIVAVNKMDLVSWDE------------------ERFEEIVSEVSK-LLKMVGYNPKDVPFIPISGFKGDNL 199 (428)
T ss_pred ----cCCceEEEEEEcccccccCH------------------HHHHHHHHHHHH-HHHHcCCCccCCeEEecccccCCcc
Confidence 22346889999999864111 234444444444 2222211224688889999999998
Q ss_pred HH
Q psy14891 338 QT 339 (359)
Q Consensus 338 ~~ 339 (359)
..
T Consensus 200 ~~ 201 (428)
T COG5256 200 TK 201 (428)
T ss_pred cc
Confidence 74
No 262
>COG1159 Era GTPase [General function prediction only]
Probab=98.34 E-value=1.2e-05 Score=74.50 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=65.5
Q ss_pred CCceeeEEecCCccccccchh--------hhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe
Q psy14891 195 GESIVNMVDVGGQRSQRRKWI--------YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS 266 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~--------~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ 266 (359)
++..+.+.||+|-..-+..-. .-+.+||.|+||+|..+ ...- .-...++.+ .. .++|
T Consensus 52 ~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~----------~~~~-~d~~il~~l-k~---~~~p 116 (298)
T COG1159 52 DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADE----------GWGP-GDEFILEQL-KK---TKTP 116 (298)
T ss_pred CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccc----------cCCc-cHHHHHHHH-hh---cCCC
Confidence 356778899999544343332 23578999999999886 1111 111122222 11 4679
Q ss_pred EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 267 FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 267 iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
++|++||+|....+. ......++....+ .-.-.+..||+.+.|+..+.+.+.+
T Consensus 117 vil~iNKID~~~~~~-------------------~l~~~~~~~~~~~--------~f~~ivpiSA~~g~n~~~L~~~i~~ 169 (298)
T COG1159 117 VILVVNKIDKVKPKT-------------------VLLKLIAFLKKLL--------PFKEIVPISALKGDNVDTLLEIIKE 169 (298)
T ss_pred eEEEEEccccCCcHH-------------------HHHHHHHHHHhhC--------CcceEEEeeccccCCHHHHHHHHHH
Confidence 999999999765433 0122233333211 0113567889999998887776665
Q ss_pred H
Q psy14891 347 L 347 (359)
Q Consensus 347 ~ 347 (359)
.
T Consensus 170 ~ 170 (298)
T COG1159 170 Y 170 (298)
T ss_pred h
Confidence 4
No 263
>PRK00007 elongation factor G; Reviewed
Probab=98.33 E-value=1.2e-05 Score=84.76 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=57.2
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+-.....+.+++..+.+.||+|+..+-.--..-.+.++++|+|+|.+. --.......+..+...
T Consensus 62 ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~-----------g~~~qt~~~~~~~~~~---- 126 (693)
T PRK00007 62 TITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVG-----------GVEPQSETVWRQADKY---- 126 (693)
T ss_pred CEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCC-----------CcchhhHHHHHHHHHc----
Confidence 3334445677788999999999988765544555788999999999775 1223445566655442
Q ss_pred CCeEEEEeeCCCcch
Q psy14891 264 EASFILFLNKFDLFR 278 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~ 278 (359)
+.|+++|.||+|+..
T Consensus 127 ~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 127 KVPRIAFVNKMDRTG 141 (693)
T ss_pred CCCEEEEEECCCCCC
Confidence 578899999999864
No 264
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.31 E-value=1.8e-05 Score=75.40 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=28.4
Q ss_pred ceeeEEecCCc----cccccc---hhhhccCCcEEEEEEECCC
Q psy14891 197 SIVNMVDVGGQ----RSQRRK---WIYCFDDVKAVLYVVALSG 232 (359)
Q Consensus 197 ~~l~i~D~~Gq----~~~r~~---w~~~f~~~~~iifv~dls~ 232 (359)
+.+++|||+|+ +..+.+ ...++++++++++|+|++.
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 67999999998 444443 3345899999999999985
No 265
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.30 E-value=7.6e-06 Score=88.44 Aligned_cols=125 Identities=11% Similarity=0.087 Sum_probs=74.2
Q ss_pred eeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcch
Q psy14891 199 VNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFR 278 (359)
Q Consensus 199 l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~ 278 (359)
+.+|||+|++.|..+....+..++++++|+|.++- -...+...+..+.. .++|+++++||+|+..
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~G-----------i~~qT~e~I~~lk~----~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEG-----------FKPQTIEAINILRQ----YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECccc-----------CCHhHHHHHHHHHH----cCCCEEEEEECCCCcc
Confidence 89999999999988888888999999999998851 11222333332222 2579999999999853
Q ss_pred -hhhhhcCCccccccccccCCCCCHHHHHHHHHHH-------Hhhhc---------cCCCCceEEEEeeccCCchHHHHH
Q psy14891 279 -EKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHK-------FALRN---------HNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 279 -~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~-------f~~~~---------~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
.+. .+..++.. .+. ...+.+.+-+.++ +.... ..-.+.+.+..+||++|+||..+.
T Consensus 593 ~~~~-~~~~~~~~---~~~---~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll 665 (1049)
T PRK14845 593 GWNI-SEDEPFLL---NFN---EQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELL 665 (1049)
T ss_pred cccc-ccchhhhh---hhh---hhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHH
Confidence 221 00111100 000 0112222222111 11110 011356778899999999999988
Q ss_pred HHHH
Q psy14891 342 HAVM 345 (359)
Q Consensus 342 ~~v~ 345 (359)
..+.
T Consensus 666 ~~l~ 669 (1049)
T PRK14845 666 MMVA 669 (1049)
T ss_pred HHHH
Confidence 7664
No 266
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.24 E-value=1e-05 Score=72.13 Aligned_cols=81 Identities=15% Similarity=0.027 Sum_probs=51.0
Q ss_pred CcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE--EEEeeCCCcchhhhhhcCCccccccccccCC
Q psy14891 221 VKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF--ILFLNKFDLFREKILYSGRHLRYYLSDFKGP 298 (359)
Q Consensus 221 ~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i--iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~ 298 (359)
++.+|.|+|..+++.... .. .....+ ++++||+|+...--
T Consensus 113 ~~~~i~vvD~~~~~~~~~-------------~~--------~~qi~~ad~~~~~k~d~~~~~~----------------- 154 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR-------------KG--------GPGITRSDLLVINKIDLAPMVG----------------- 154 (199)
T ss_pred hCcEEEEEEcchhhhhhh-------------hh--------HhHhhhccEEEEEhhhcccccc-----------------
Confidence 577999999998544210 00 012233 78899999864211
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 299 DFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 299 ~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
.+.+.+.+.++.. + ....+++|||++++||+++|+.+.+..
T Consensus 155 -~~~~~~~~~~~~~----~----~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 155 -ADLGVMERDAKKM----R----GEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred -ccHHHHHHHHHHh----C----CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 2333444444432 1 235568999999999999999888654
No 267
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.18 E-value=6.5e-06 Score=72.55 Aligned_cols=100 Identities=16% Similarity=0.055 Sum_probs=63.1
Q ss_pred cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccc
Q psy14891 210 QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLR 289 (359)
Q Consensus 210 ~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~ 289 (359)
+++.|..+++++++|++|+|+++.+.. ..+. + .. ...+.|+++++||+|+..+..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~---------~~~~---l---~~--~~~~~~~ilV~NK~Dl~~~~~-------- 78 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS---------LIPR---L---RL--FGGNNPVILVGNKIDLLPKDK-------- 78 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc---------cchh---H---HH--hcCCCcEEEEEEchhcCCCCC--------
Confidence 688999999999999999999974311 1111 1 11 124679999999999864221
Q ss_pred cccccccCCCCCHHHHHHHHHH-HHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 290 YYLSDFKGPDFDVDSGALFIQH-KFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 290 ~~fp~y~g~~~~~~~a~~fi~~-~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
..+....|... .+..... ..-.++.+||+++.|+++++..+.+.+
T Consensus 79 -----------~~~~~~~~~~~~~~~~~~~---~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 79 -----------NLVRIKNWLRAKAAAGLGL---KPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred -----------CHHHHHHHHHHHHHhhcCC---CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 22333334311 1111100 011357899999999999999988754
No 268
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.15 E-value=7.2e-05 Score=71.60 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=64.4
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.+..+.+.||+|-..-. .....-+|.+++|.+... ...+.... ..++. ..-+++.||.
T Consensus 147 ~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~----------gd~iq~~k---~gi~E------~aDIiVVNKa 204 (332)
T PRK09435 147 AGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGA----------GDELQGIK---KGIME------LADLIVINKA 204 (332)
T ss_pred cCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCc----------hHHHHHHH---hhhhh------hhheEEeehh
Confidence 45678899999976222 224567899999976332 12221111 11222 1237889999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccC-CCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHN-SAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~-~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
|+.... ..+.....+...+...... +.....++.|||+++++|.++++.+.+..
T Consensus 205 Dl~~~~--------------------~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 205 DGDNKT--------------------AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred cccchh--------------------HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 986421 1233333444433322211 11223567899999999999999988754
No 269
>KOG1534|consensus
Probab=98.10 E-value=2.7e-06 Score=74.76 Aligned_cols=182 Identities=19% Similarity=0.160 Sum_probs=102.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhccccccCcchhHHhhcchhhccCCCccCccccccccccccceeEEEEeeCCceeeEEec
Q psy14891 125 DVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDV 204 (359)
Q Consensus 125 ~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~Pt~~Dil~~r~~T~G~~~~~~~~~~~~l~i~D~ 204 (359)
++.-.|+.|..-..|++-+.-.+.-.|.-+.+|+++|++.+-.. +|-. .-.+-++|+
T Consensus 49 ~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~~NldwL~~~----------------~Gd~-------eddylifDc 105 (273)
T KOG1534|consen 49 PVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLLENLDWLEEE----------------IGDV-------EDDYLIFDC 105 (273)
T ss_pred cccccHHHhccHHHHHHHhccCCCccchhHHHHHHHHHHHHHhh----------------ccCc-------cCCEEEEeC
Confidence 44556777777677777777777778889999999999987651 2210 124568999
Q ss_pred CCcccc-------ccchhh----hccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc---cCCCCCeEEEE
Q psy14891 205 GGQRSQ-------RRKWIY----CFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN---RYFREASFILF 270 (359)
Q Consensus 205 ~Gq~~~-------r~~w~~----~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~---~~~~~~~iiL~ 270 (359)
+||=.. +.+-.| +|+ -+++|+.|.. -+-++-+.+...+.. -..-.+|-|-+
T Consensus 106 PGQIELytH~pVm~~iv~hl~~~~F~--~c~Vylldsq-------------f~vD~~KfiSG~lsAlsAMi~lE~P~INv 170 (273)
T KOG1534|consen 106 PGQIELYTHLPVMPQIVEHLKQWNFN--VCVVYLLDSQ-------------FLVDSTKFISGCLSALSAMISLEVPHINV 170 (273)
T ss_pred CCeeEEeecChhHHHHHHHHhcccCc--eeEEEEeccc-------------hhhhHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 999431 111111 232 3567777732 244444444444321 01136789999
Q ss_pred eeCCCcchhhhhhcCCccccc-cccccCCCCCHHHHHHHHHHHHhhhcc------CCCCceEEEEeeccCCchHHHHHHH
Q psy14891 271 LNKFDLFREKILYSGRHLRYY-LSDFKGPDFDVDSGALFIQHKFALRNH------NSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 271 ~NK~Dl~~~k~~~~~~~l~~~-fp~y~g~~~~~~~a~~fi~~~f~~~~~------~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
+.|.||..+|- +..|..+ -|+--+- -.++....-..||..+++ .....+.++....-+.+.|+.+...
T Consensus 171 lsKMDLlk~~~---k~~l~~Fl~~d~~~l--~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ 245 (273)
T KOG1534|consen 171 LSKMDLLKDKN---KKELERFLNPDEYLL--LEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSY 245 (273)
T ss_pred hhHHHHhhhhh---HHHHHHhcCCchhhh--hcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHH
Confidence 99999987643 2223222 1211110 000000111123333321 2245677888888889999999988
Q ss_pred HHHHHH
Q psy14891 344 VMDLVI 349 (359)
Q Consensus 344 v~~~Il 349 (359)
|-+.|.
T Consensus 246 ID~aiQ 251 (273)
T KOG1534|consen 246 IDDAIQ 251 (273)
T ss_pred HHHHHH
Confidence 877664
No 270
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.10 E-value=5.1e-05 Score=71.14 Aligned_cols=85 Identities=24% Similarity=0.421 Sum_probs=61.4
Q ss_pred cccceeEEEEeeCCceeeEEecCCcc----ccccc----hhhhccC-CcEEEEEEECCCCccccccCCcccchHHHHHHH
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQR----SQRRK----WIYCFDD-VKAVLYVVALSGYDMTLLEDSSVNRLDESLNLF 253 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~----~~r~~----w~~~f~~-~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~ 253 (359)
.|-|+..-+|..+...+|+.||+|-- .+|.- -..-.+. .++|+|++|.|.. +--.+++-..+|
T Consensus 201 TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~--------cgy~lE~Q~~L~ 272 (346)
T COG1084 201 TTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET--------CGYSLEEQISLL 272 (346)
T ss_pred cccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc--------cCCCHHHHHHHH
Confidence 46778778888889999999999952 11211 1111222 3679999999983 345677888999
Q ss_pred HHHHhccCCCCCeEEEEeeCCCcch
Q psy14891 254 EQVVNNRYFREASFILFLNKFDLFR 278 (359)
Q Consensus 254 ~~i~~~~~~~~~~iiL~~NK~Dl~~ 278 (359)
+++-. .|. .|+++|.||.|+..
T Consensus 273 ~eIk~--~f~-~p~v~V~nK~D~~~ 294 (346)
T COG1084 273 EEIKE--LFK-APIVVVINKIDIAD 294 (346)
T ss_pred HHHHH--hcC-CCeEEEEecccccc
Confidence 99965 355 89999999999873
No 271
>KOG1191|consensus
Probab=98.07 E-value=7e-05 Score=73.52 Aligned_cols=132 Identities=20% Similarity=0.207 Sum_probs=77.2
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchh---------hhccCCcEEEEEEEC--CCCccccccCCcccchHHHHHH
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWI---------YCFDDVKAVLYVVAL--SGYDMTLLEDSSVNRLDESLNL 252 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~---------~~f~~~~~iifv~dl--s~yd~~l~ed~~~~~l~es~~~ 252 (359)
|.-..+..|+++|+++.+.||+|-+..+..-. .-.+.+|.|++|+|. +++ .+-......
T Consensus 303 TRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t----------~sd~~i~~~ 372 (531)
T KOG1191|consen 303 TRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDT----------ESDLKIARI 372 (531)
T ss_pred chhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccc----------ccchHHHHH
Confidence 33356778889999999999999876332221 123578999999998 431 111111122
Q ss_pred HHHHHh-----ccCCCCCeEEEEeeCCCcchhhhhh-cCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEE
Q psy14891 253 FEQVVN-----NRYFREASFILFLNKFDLFREKILY-SGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYP 326 (359)
Q Consensus 253 ~~~i~~-----~~~~~~~~iiL~~NK~Dl~~~k~~~-~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~ 326 (359)
+...-. .+.....+++++.||.|+.. ++.+ +..|+ .+|.-.|. -....
T Consensus 373 l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s-~~~~~~~~~~--~~~~~~~~-----------------------~~~~i 426 (531)
T KOG1191|consen 373 LETEGVGLVVIVNKMEKQRIILVANKSDLVS-KIPEMTKIPV--VYPSAEGR-----------------------SVFPI 426 (531)
T ss_pred HHHhccceEEEeccccccceEEEechhhccC-ccccccCCce--eccccccC-----------------------cccce
Confidence 222210 11124579999999999864 3200 11111 11111111 11233
Q ss_pred EE-eeccCCchHHHHHHHHHHHHHHh
Q psy14891 327 HF-TTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 327 ~~-tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
|. +|+++++.++.+-+++.+.+...
T Consensus 427 ~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 427 VVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred EEEeeechhhhHHHHHHHHHHHHHHh
Confidence 44 99999999999999888877654
No 272
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.03 E-value=1.6e-05 Score=77.21 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=70.5
Q ss_pred ccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCC
Q psy14891 207 QRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGR 286 (359)
Q Consensus 207 q~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~ 286 (359)
++.++.+...++++++.|++|+|+.++... + ...+...+ .+.|++|++||+|+..+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s---------~---~~~l~~~~-----~~~piilV~NK~DLl~k~------ 106 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS---------L---IPELKRFV-----GGNPVLLVGNKIDLLPKS------ 106 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC---------c---cHHHHHHh-----CCCCEEEEEEchhhCCCC------
Confidence 567888888899999999999999874321 1 12222222 257999999999986532
Q ss_pred ccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 287 HLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 287 ~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
...+.+.+|+++.+....- ....++++||+++.||+++|+.+.+.
T Consensus 107 -------------~~~~~~~~~l~~~~k~~g~---~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 107 -------------VNLSKIKEWMKKRAKELGL---KPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred -------------CCHHHHHHHHHHHHHHcCC---CcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 2456677777665543211 11136789999999999999998653
No 273
>COG2262 HflX GTPases [General function prediction only]
Probab=97.96 E-value=0.00032 Score=67.72 Aligned_cols=88 Identities=23% Similarity=0.279 Sum_probs=57.0
Q ss_pred cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCC
Q psy14891 219 DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGP 298 (359)
Q Consensus 219 ~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~ 298 (359)
..+|.++.|+|.|+ . ...+-++--..++..-.....|+|+++||+|+.....
T Consensus 270 ~~aDlllhVVDaSd----------p-~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----------------- 321 (411)
T COG2262 270 KEADLLLHVVDASD----------P-EILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----------------- 321 (411)
T ss_pred hcCCEEEEEeecCC----------h-hHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----------------
Confidence 46899999999998 2 3333344444444443345689999999999654211
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 299 DFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 299 ~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
....+... .. ...++||+++.+++.+.+.+.+.+-.
T Consensus 322 ------~~~~~~~~---------~~-~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 322 ------ILAELERG---------SP-NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred ------hhhhhhhc---------CC-CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 00011110 01 24679999999999999988887753
No 274
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.91 E-value=3.6e-05 Score=65.43 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=58.1
Q ss_pred cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccc
Q psy14891 210 QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLR 289 (359)
Q Consensus 210 ~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~ 289 (359)
+|.++.+..++++.+|+|+|.++-. ... ...+. .... ..+.|+++++||+|+..+..
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~--------~~~---~~~l~-~~~~---~~~~p~iiv~NK~Dl~~~~~-------- 58 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPE--------LTR---SRKLE-RYVL---ELGKKLLIVLNKADLVPKEV-------- 58 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCc--------ccC---CHHHH-HHHH---hCCCcEEEEEEhHHhCCHHH--------
Confidence 3567888999999999999987611 000 01111 1122 13579999999999853211
Q ss_pred cccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 290 YYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 290 ~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
......+... ....++++||+++.+++.+++.+.+.+
T Consensus 59 ------------~~~~~~~~~~----------~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 59 ------------LEKWKSIKES----------EGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred ------------HHHHHHHHHh----------CCCcEEEEEccccccHHHHHHHHHHHH
Confidence 1111111110 113357899999999999999887654
No 275
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.90 E-value=0.00018 Score=64.70 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=49.1
Q ss_pred ceeEEEEeeCCceeeEEecCCcccc-------ccchh----hhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHH
Q psy14891 186 GIIETNFRLGESIVNMVDVGGQRSQ-------RRKWI----YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFE 254 (359)
Q Consensus 186 G~~~~~~~~~~~~l~i~D~~Gq~~~-------r~~w~----~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~ 254 (359)
.+......+.+..+.++||+|--.- ..... .+..+.+++|||+.+..| .+.-...++++.
T Consensus 38 ~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~---------t~~~~~~l~~l~ 108 (212)
T PF04548_consen 38 ECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRF---------TEEDREVLELLQ 108 (212)
T ss_dssp S-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB----------SHHHHHHHHHHH
T ss_pred ccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcc---------hHHHHHHHHHHH
Confidence 3444455778899999999994211 11111 234689999999998864 334456677888
Q ss_pred HHHhccCCCCCeEEEEeeCCCcch
Q psy14891 255 QVVNNRYFREASFILFLNKFDLFR 278 (359)
Q Consensus 255 ~i~~~~~~~~~~iiL~~NK~Dl~~ 278 (359)
+++...... .++|+++..|-+.
T Consensus 109 ~~FG~~~~k--~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 109 EIFGEEIWK--HTIVVFTHADELE 130 (212)
T ss_dssp HHHCGGGGG--GEEEEEEEGGGGT
T ss_pred HHccHHHHh--HhhHHhhhccccc
Confidence 887655443 3666677777543
No 276
>PTZ00416 elongation factor 2; Provisional
Probab=97.87 E-value=7.5e-05 Score=80.19 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=51.8
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+..+.+.||+|+..+-.--....+.+|++|+|+|.++ .-...+...|..+... +.|+++|.||+|
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~-----------g~~~~t~~~~~~~~~~----~~p~iv~iNK~D 155 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVE-----------GVCVQTETVLRQALQE----RIRPVLFINKVD 155 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCC-----------CcCccHHHHHHHHHHc----CCCEEEEEEChh
Confidence 4678999999998887666777899999999999876 1222344566666543 579999999999
Q ss_pred cc
Q psy14891 276 LF 277 (359)
Q Consensus 276 l~ 277 (359)
+.
T Consensus 156 ~~ 157 (836)
T PTZ00416 156 RA 157 (836)
T ss_pred hh
Confidence 97
No 277
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.87 E-value=0.0001 Score=79.22 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=52.3
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+..+++.||+|+..|-.-.....+.+|++|+|+|.++ .-...+...|..+.. .+.|+++|.||+|
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~-----------Gv~~~t~~~~~~~~~----~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIE-----------GVCVQTETVLRQALG----ERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCC-----------CCcccHHHHHHHHHH----CCCCEEEEEECCc
Confidence 4678899999999987777777899999999999886 112234456666554 3679999999999
Q ss_pred cc
Q psy14891 276 LF 277 (359)
Q Consensus 276 l~ 277 (359)
..
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 87
No 278
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.86 E-value=6.7e-05 Score=79.58 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=50.8
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+..+.+.||+|+..|........+.+|++|+|+|... .-.......|...... +.|.++|.||+|
T Consensus 86 ~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~-----------g~~~~t~~~~~~~~~~----~~~~iv~iNK~D 150 (731)
T PRK07560 86 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVE-----------GVMPQTETVLRQALRE----RVKPVLFINKVD 150 (731)
T ss_pred cEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCC-----------CCCccHHHHHHHHHHc----CCCeEEEEECch
Confidence 5678899999999887777777899999999999775 1123344555554332 457799999999
Q ss_pred cch
Q psy14891 276 LFR 278 (359)
Q Consensus 276 l~~ 278 (359)
+..
T Consensus 151 ~~~ 153 (731)
T PRK07560 151 RLI 153 (731)
T ss_pred hhc
Confidence 764
No 279
>PRK00098 GTPase RsgA; Reviewed
Probab=97.86 E-value=7.1e-05 Score=70.88 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=54.8
Q ss_pred ccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccC
Q psy14891 218 FDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKG 297 (359)
Q Consensus 218 f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g 297 (359)
..++|.+++|+|+++ .......+..|...+.. .++|++|++||+|+..++.
T Consensus 78 aaniD~vllV~d~~~----------p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~---------------- 128 (298)
T PRK00098 78 AANVDQAVLVFAAKE----------PDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE---------------- 128 (298)
T ss_pred eecCCEEEEEEECCC----------CCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH----------------
Confidence 389999999999986 22222333333333332 4789999999999853221
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 298 PDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 298 ~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
..+...++..+ ..+.++++||++++|++.++..+..
T Consensus 129 ---~~~~~~~~~~~----------~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 129 ---EARELLALYRA----------IGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred ---HHHHHHHHHHH----------CCCeEEEEeCCCCccHHHHHhhccC
Confidence 11112222211 2345788999999999999987653
No 280
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.77 E-value=0.00047 Score=70.55 Aligned_cols=117 Identities=18% Similarity=0.165 Sum_probs=81.9
Q ss_pred ccceeEEEEeeCCceeeEEecCCcccccc------chhhhc--cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHH
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRR------KWIYCF--DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQ 255 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~------~w~~~f--~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~ 255 (359)
|+--.+-.+..++..+++.|++|--+... ....|. ..+|.||-|+|.++ ++..+-+.-+
T Consensus 37 TVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtn-------------LeRnLyltlQ 103 (653)
T COG0370 37 TVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATN-------------LERNLYLTLQ 103 (653)
T ss_pred eEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccch-------------HHHHHHHHHH
Confidence 33344556677788899999999765432 333453 45799999999887 6667777777
Q ss_pred HHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc
Q psy14891 256 VVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS 335 (359)
Q Consensus 256 i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ 335 (359)
+..- +.|+++++|+.|..+++- .. .|.+.-.+- ..+....|+|+.++
T Consensus 104 LlE~----g~p~ilaLNm~D~A~~~G----i~------------ID~~~L~~~-------------LGvPVv~tvA~~g~ 150 (653)
T COG0370 104 LLEL----GIPMILALNMIDEAKKRG----IR------------IDIEKLSKL-------------LGVPVVPTVAKRGE 150 (653)
T ss_pred HHHc----CCCeEEEeccHhhHHhcC----Cc------------ccHHHHHHH-------------hCCCEEEEEeecCC
Confidence 7653 678999999999866432 11 233322211 45778899999999
Q ss_pred hHHHHHHHHHH
Q psy14891 336 NVQTVFHAVMD 346 (359)
Q Consensus 336 ni~~vf~~v~~ 346 (359)
+++++.+++.+
T Consensus 151 G~~~l~~~i~~ 161 (653)
T COG0370 151 GLEELKRAIIE 161 (653)
T ss_pred CHHHHHHHHHH
Confidence 99988887764
No 281
>PRK12289 GTPase RsgA; Reviewed
Probab=97.74 E-value=0.00015 Score=70.03 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=56.8
Q ss_pred chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCcccccc
Q psy14891 213 KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYL 292 (359)
Q Consensus 213 ~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~f 292 (359)
+....+.++|.|++|+|+.+ ..--...+..|-..+. ..++|++|++||+||..+.
T Consensus 82 L~R~~~aNvD~vLlV~d~~~----------p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~------------ 136 (352)
T PRK12289 82 LDRPPVANADQILLVFALAE----------PPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPT------------ 136 (352)
T ss_pred eechhhhcCCEEEEEEECCC----------CCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChH------------
Confidence 33456899999999999986 2111111122222222 2478999999999985321
Q ss_pred ccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 293 SDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 293 p~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+...| .+.|.. ..+.++++||+++++|..+++.+.+.
T Consensus 137 -----------~~~~~-~~~~~~------~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 137 -----------EQQQW-QDRLQQ------WGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred -----------HHHHH-HHHHHh------cCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 11122 222221 23456889999999999999888653
No 282
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.72 E-value=0.00029 Score=70.52 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=70.3
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
..+.+.|++|++.|-+-...-...+|++++|+|..+ .-......+.+. ++.. +.-.++++++||+|+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~----------g~~~~qT~ehl~-i~~~--lgi~~iIVvlNKiDl 183 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANE----------SCPQPQTSEHLA-AVEI--MKLKHIIILQNKIDL 183 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCC----------CccchhhHHHHH-HHHH--cCCCcEEEEEecccc
Confidence 357899999999885554455678999999999885 101111222222 2211 122478999999998
Q ss_pred chh-hhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FRE-KILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~-k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
... .+ . ...++..+++...+ .....++.+||++++||..+.+.+.+.+
T Consensus 184 v~~~~~--~---------------~~~~ei~~~l~~~~-------~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 184 VKEAQA--Q---------------DQYEEIRNFVKGTI-------ADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred cCHHHH--H---------------HHHHHHHHHHHhhc-------cCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 642 22 0 11223333332211 1345678899999999998888877533
No 283
>PLN03127 Elongation factor Tu; Provisional
Probab=97.70 E-value=0.0006 Score=68.18 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=53.2
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
..|+......++.++..+.+.||+|++.+-+....-...+|++++|+|..+ .-.....+.+..+..
T Consensus 109 GiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~-----------g~~~qt~e~l~~~~~--- 174 (447)
T PLN03127 109 GITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-----------GPMPQTKEHILLARQ--- 174 (447)
T ss_pred CceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCC-----------CCchhHHHHHHHHHH---
Confidence 345555555666667889999999998764433333456999999999765 112233344443322
Q ss_pred CCCCe-EEEEeeCCCcch
Q psy14891 262 FREAS-FILFLNKFDLFR 278 (359)
Q Consensus 262 ~~~~~-iiL~~NK~Dl~~ 278 (359)
.++| ++++.||+|+..
T Consensus 175 -~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 175 -VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred -cCCCeEEEEEEeeccCC
Confidence 2567 578899999864
No 284
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.69 E-value=0.0004 Score=68.03 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=84.5
Q ss_pred cccccccccceeEEEEeeC-----CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHH
Q psy14891 177 VLRARVRTNGIIETNFRLG-----ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLN 251 (359)
Q Consensus 177 il~~r~~T~G~~~~~~~~~-----~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~ 251 (359)
+-|-|--|+-.....+.++ .+.|++.||+|+-.|.---...+..|.|+++|+|.+. --=..++.
T Consensus 51 iERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQ-----------GveAQTlA 119 (603)
T COG0481 51 IERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQ-----------GVEAQTLA 119 (603)
T ss_pred hHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECcc-----------chHHHHHH
Confidence 3344455655444444442 3889999999998886555555677899999999885 11122333
Q ss_pred HHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeec
Q psy14891 252 LFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTA 331 (359)
Q Consensus 252 ~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA 331 (359)
.+-..+.+ +.-|+-|+||+||+.. +++.+.+-|.+-+- +.. --...+||
T Consensus 120 N~YlAle~----~LeIiPViNKIDLP~A---------------------dpervk~eIe~~iG-id~-----~dav~~SA 168 (603)
T COG0481 120 NVYLALEN----NLEIIPVLNKIDLPAA---------------------DPERVKQEIEDIIG-IDA-----SDAVLVSA 168 (603)
T ss_pred HHHHHHHc----CcEEEEeeecccCCCC---------------------CHHHHHHHHHHHhC-CCc-----chheeEec
Confidence 33333332 4578889999999763 45555555555321 111 12356899
Q ss_pred cCCchHHHHHHHHHHHH
Q psy14891 332 TDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 332 ~d~~ni~~vf~~v~~~I 348 (359)
|+|.||.++++++.+.|
T Consensus 169 KtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 169 KTGIGIEDVLEAIVEKI 185 (603)
T ss_pred ccCCCHHHHHHHHHhhC
Confidence 99999999999988765
No 285
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00055 Score=68.12 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=74.3
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.-.+.+.||+|++.|-.+...=..=+|.+|+|+|..| -.+....+-.... .-.++|++++.||+|
T Consensus 54 ~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dD-----------Gv~pQTiEAI~ha----k~a~vP~iVAiNKiD 118 (509)
T COG0532 54 IPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADD-----------GVMPQTIEAINHA----KAAGVPIVVAINKID 118 (509)
T ss_pred CceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccC-----------CcchhHHHHHHHH----HHCCCCEEEEEeccc
Confidence 4688999999999998887765566799999999987 3333333322222 235899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCC-CCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNS-AKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~-~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
..+... +....-..+. .+.... .+.+-+..+||++++||.+++..+.-
T Consensus 119 k~~~np---------------------~~v~~el~~~--gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 119 KPEANP---------------------DKVKQELQEY--GLVPEEWGGDVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred CCCCCH---------------------HHHHHHHHHc--CCCHhhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence 764211 1111111110 111111 24577888999999999999887653
No 286
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.68 E-value=0.0003 Score=56.56 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=35.0
Q ss_pred hhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcch
Q psy14891 215 IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFR 278 (359)
Q Consensus 215 ~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~ 278 (359)
..+++++++++.|++.++ .+++... |...+... .-.+.|+++++||.|+.+
T Consensus 41 ~~~~~s~~~~~~v~~~~~----------~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 41 PTSYESFDVVLQCWRVDD----------RDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEE 91 (124)
T ss_pred ccccCCCCEEEEEEEccC----------HHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHh
Confidence 457788899999999887 4444332 44444332 224688999999999744
No 287
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.65 E-value=0.00074 Score=62.26 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=44.5
Q ss_pred EEEeeCCceeeEEecCCccccc--cch--------hhhcc--CCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 190 TNFRLGESIVNMVDVGGQRSQR--RKW--------IYCFD--DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~~r--~~w--------~~~f~--~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
.....++.++.+|||+|-.... ..+ ..|.. ..++|+||..++.... ...-...++.+...+
T Consensus 72 ~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~-------~~~d~~llk~I~e~f 144 (249)
T cd01853 72 VSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR-------DYLDLPLLRAITDSF 144 (249)
T ss_pred EEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC-------CHHHHHHHHHHHHHh
Confidence 3444567889999999965431 111 12332 5788888877665110 011113344444444
Q ss_pred hccCCCCCeEEEEeeCCCcc
Q psy14891 258 NNRYFREASFILFLNKFDLF 277 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~ 277 (359)
..... .++++++||+|..
T Consensus 145 G~~i~--~~~ivV~T~~d~~ 162 (249)
T cd01853 145 GPSIW--RNAIVVLTHAASS 162 (249)
T ss_pred ChhhH--hCEEEEEeCCccC
Confidence 32221 3589999999974
No 288
>KOG1145|consensus
Probab=97.63 E-value=0.00026 Score=70.41 Aligned_cols=118 Identities=11% Similarity=0.079 Sum_probs=76.6
Q ss_pred EEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEE
Q psy14891 190 TNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFIL 269 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL 269 (359)
..+. +|-++++.||+|+.-|..+...=-..+|.|++|++..| .-+...++-+. +-..+++|+++
T Consensus 195 V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadD-----------GVmpQT~EaIk----hAk~A~VpiVv 258 (683)
T KOG1145|consen 195 VTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADD-----------GVMPQTLEAIK----HAKSANVPIVV 258 (683)
T ss_pred EecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccC-----------CccHhHHHHHH----HHHhcCCCEEE
Confidence 3444 67899999999999998887754455688999998776 33333333332 22346899999
Q ss_pred EeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 270 FLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 270 ~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
..||+|..+... +.+.+-+...=..+- .-...+.+...||+.++|+..+-+++.
T Consensus 259 AinKiDkp~a~p---------------------ekv~~eL~~~gi~~E-~~GGdVQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 259 AINKIDKPGANP---------------------EKVKRELLSQGIVVE-DLGGDVQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred EEeccCCCCCCH---------------------HHHHHHHHHcCccHH-HcCCceeEEEeecccCCChHHHHHHHH
Confidence 999999765433 333322222100000 002457888999999999998777654
No 289
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.63 E-value=0.00052 Score=67.10 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=94.2
Q ss_pred cccccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 179 RARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 179 ~~r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
+-|--|+=-..+.+.++++.++|.||+|+-.|----..-+.=+|+|++++|..+ --|-...-.++..+.
T Consensus 50 kERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-----------GpMPQTrFVlkKAl~ 118 (603)
T COG1217 50 KERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALA 118 (603)
T ss_pred hhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-----------CCCCchhhhHHHHHH
Confidence 344455555667788899999999999998776655566677999999999887 344445555555554
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCC-CCceEEEEeeccCC---
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNS-AKVIYPHFTTATDT--- 334 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~-~~~i~~~~tsA~d~--- 334 (359)
. +.+-|++.||+|....+ ++.+.+-..+.|.++..+. ...+...+.||.+|
T Consensus 119 ~----gL~PIVVvNKiDrp~Ar---------------------p~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~ 173 (603)
T COG1217 119 L----GLKPIVVINKIDRPDAR---------------------PDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTAS 173 (603)
T ss_pred c----CCCcEEEEeCCCCCCCC---------------------HHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceec
Confidence 3 33446667999987644 4667777777888776543 45677778888764
Q ss_pred -------chHHHHHHHHHHHH
Q psy14891 335 -------SNVQTVFHAVMDLV 348 (359)
Q Consensus 335 -------~ni~~vf~~v~~~I 348 (359)
.++.-+|+.+.+.+
T Consensus 174 ~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 174 LDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred cCccccccchhHHHHHHHHhC
Confidence 46677777776654
No 290
>KOG1489|consensus
Probab=97.60 E-value=0.0003 Score=65.71 Aligned_cols=113 Identities=17% Similarity=0.219 Sum_probs=70.8
Q ss_pred ceeeEEecCCccc-------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH-hccCCCCCeEE
Q psy14891 197 SIVNMVDVGGQRS-------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV-NNRYFREASFI 268 (359)
Q Consensus 197 ~~l~i~D~~Gq~~-------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~-~~~~~~~~~ii 268 (359)
..+.+-|++|-=. .--....+.+.++.++||+|++.+.. .+-++....++.++- -...+.+.|.+
T Consensus 244 ~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~ELe~yek~L~~rp~l 316 (366)
T KOG1489|consen 244 SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEELELYEKGLADRPAL 316 (366)
T ss_pred ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHHHHHHHHhhhhccCceE
Confidence 3488999988422 12233445678999999999998422 144444444444442 23456788999
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
+|+||+|+.+..- +++.+....+ ....++..||+.++++..+.+.+..
T Consensus 317 iVaNKiD~~eae~-------------------------~~l~~L~~~l-----q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 317 IVANKIDLPEAEK-------------------------NLLSSLAKRL-----QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred EEEeccCchhHHH-------------------------HHHHHHHHHc-----CCCcEEEeeeccccchHHHHHHHhh
Confidence 9999999854221 1222222211 1124677999999999998887754
No 291
>KOG1144|consensus
Probab=97.58 E-value=0.00025 Score=72.61 Aligned_cols=137 Identities=19% Similarity=0.130 Sum_probs=85.8
Q ss_pred eeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcc
Q psy14891 198 IVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLF 277 (359)
Q Consensus 198 ~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~ 277 (359)
-+.+.||+|+++|..+....-..|+.+|+|+|+..= . .....+|+.++.. .++|+|+.+||+|.+
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG----l----epqtiESi~lLR~-------rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG----L----EPQTIESINLLRM-------RKTPFIVALNKIDRL 605 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhcc----C----CcchhHHHHHHHh-------cCCCeEEeehhhhhh
Confidence 467899999999988888777889999999998751 1 1233555555543 589999999999975
Q ss_pred hhhhhhcCCccccccccccCC-CCCHHHHHHHHHHHHhhh---------ccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 278 REKILYSGRHLRYYLSDFKGP-DFDVDSGALFIQHKFALR---------NHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 278 ~~k~~~~~~~l~~~fp~y~g~-~~~~~~a~~fi~~~f~~~---------~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
-..-.-+..++...+..-... .+.+..-.+-|...|.+. |+...+.+....|||..|++|-.++--+...
T Consensus 606 Ygwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 606 YGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred cccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 322101333333333322221 022233333344444332 1233466777889999999999887766654
Q ss_pred HH
Q psy14891 348 VI 349 (359)
Q Consensus 348 Il 349 (359)
-.
T Consensus 686 tQ 687 (1064)
T KOG1144|consen 686 TQ 687 (1064)
T ss_pred HH
Confidence 43
No 292
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.53 E-value=0.0002 Score=49.89 Aligned_cols=45 Identities=29% Similarity=0.534 Sum_probs=31.8
Q ss_pred CcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 221 VKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 221 ~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.++|+|++|+|+. +--++++-+.+|+++-. .|.+.|+++++||+|
T Consensus 14 ~~~ilfi~D~Se~--------CGysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQ--------CGYSIEEQLSLFKEIKP--LFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-T--------TSS-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCC--------CCCCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence 4789999999983 24578888999999954 588999999999998
No 293
>KOG1423|consensus
Probab=97.52 E-value=0.00061 Score=63.42 Aligned_cols=130 Identities=21% Similarity=0.253 Sum_probs=70.2
Q ss_pred CCceeeEEecCCccccccchh------------hhccCCcEEEEEEECCCCccccccCCcccchHH-HHHHHHHHHhccC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWI------------YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDE-SLNLFEQVVNNRY 261 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~------------~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~e-s~~~~~~i~~~~~ 261 (359)
+...+.++||+|--.-..... +-..++|+|+.|+|.++ +.+-++- .+..++..
T Consensus 118 ~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~---------tr~~l~p~vl~~l~~y----- 183 (379)
T KOG1423|consen 118 GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASA---------TRTPLHPRVLHMLEEY----- 183 (379)
T ss_pred CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccC---------CcCccChHHHHHHHHH-----
Confidence 456788899998532211111 23467899999999996 1122211 22223322
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccC--CCCce------EEEEeeccC
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHN--SAKVI------YPHFTTATD 333 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~--~~~~i------~~~~tsA~d 333 (359)
.+.|-+|++||.|....|. ---++.....+ | ......--+.++|...-.. .++.+ -+|++||+.
T Consensus 184 -s~ips~lvmnkid~~k~k~--~Ll~l~~~Lt~--g---~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~ 255 (379)
T KOG1423|consen 184 -SKIPSILVMNKIDKLKQKR--LLLNLKDLLTN--G---ELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALY 255 (379)
T ss_pred -hcCCceeeccchhcchhhh--HHhhhHHhccc--c---ccchhhhhHHHHhccCCcccccccccCcccceeEEEEeccc
Confidence 4578899999999876654 22222222111 1 1111233344555543210 01111 157799999
Q ss_pred CchHHHHHHHHHH
Q psy14891 334 TSNVQTVFHAVMD 346 (359)
Q Consensus 334 ~~ni~~vf~~v~~ 346 (359)
|++|+++=+.+..
T Consensus 256 G~GikdlkqyLms 268 (379)
T KOG1423|consen 256 GEGIKDLKQYLMS 268 (379)
T ss_pred ccCHHHHHHHHHh
Confidence 9999977655543
No 294
>KOG1490|consensus
Probab=97.41 E-value=0.0003 Score=69.32 Aligned_cols=126 Identities=19% Similarity=0.186 Sum_probs=83.3
Q ss_pred EEeeCCceeeEEecCCcc---ccccchhh-h----cc-CCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 191 NFRLGESIVNMVDVGGQR---SQRRKWIY-C----FD-DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~---~~r~~w~~-~----f~-~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
.+.++-..|++.||+|-- -+.+..+. + .. =-.+|+|+.|+|+ .+--+..+-.++|.+| .|.
T Consensus 209 H~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe--------~CGySva~QvkLfhsI--KpL 278 (620)
T KOG1490|consen 209 HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSE--------MCGYSVAAQVKLYHSI--KPL 278 (620)
T ss_pred hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechh--------hhCCCHHHHHHHHHHh--HHH
Confidence 333444788999999942 12111111 1 00 1257999999997 3356788889999998 478
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
|.|.|+||++||+|+..- .+|. ..-++..+.+.. ..++.+..||+.+.++|-.|=
T Consensus 279 FaNK~~IlvlNK~D~m~~------edL~----------~~~~~ll~~~~~---------~~~v~v~~tS~~~eegVm~Vr 333 (620)
T KOG1490|consen 279 FANKVTILVLNKIDAMRP------EDLD----------QKNQELLQTIID---------DGNVKVVQTSCVQEEGVMDVR 333 (620)
T ss_pred hcCCceEEEeecccccCc------cccC----------HHHHHHHHHHHh---------ccCceEEEecccchhceeeHH
Confidence 999999999999998641 1110 111223333333 245778899999999998887
Q ss_pred HHHHHHHHHh
Q psy14891 342 HAVMDLVIKI 351 (359)
Q Consensus 342 ~~v~~~Il~~ 351 (359)
....+.+|..
T Consensus 334 t~ACe~LLa~ 343 (620)
T KOG1490|consen 334 TTACEALLAA 343 (620)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 295
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.38 E-value=0.0016 Score=61.47 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=42.9
Q ss_pred eCCceeeEEecCCccccccc---hhh----hc--cCCcEEEEEEECCCCccccccCCcccch-HHHHHHHHHHHhccCCC
Q psy14891 194 LGESIVNMVDVGGQRSQRRK---WIY----CF--DDVKAVLYVVALSGYDMTLLEDSSVNRL-DESLNLFEQVVNNRYFR 263 (359)
Q Consensus 194 ~~~~~l~i~D~~Gq~~~r~~---w~~----~f--~~~~~iifv~dls~yd~~l~ed~~~~~l-~es~~~~~~i~~~~~~~ 263 (359)
..+.++.+|||+|....... ... |. .+.++||||..+..+. .... ...++.+..++.....
T Consensus 83 ~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R--------~~~~DkqlLk~Iqe~FG~~iw- 153 (313)
T TIGR00991 83 RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR--------VDTLDGQVIRAITDSFGKDIW- 153 (313)
T ss_pred ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc--------CCHHHHHHHHHHHHHhhhhhh-
Confidence 46789999999997643111 111 11 2689999997766410 0101 2234444554433221
Q ss_pred CCeEEEEeeCCCcc
Q psy14891 264 EASFILFLNKFDLF 277 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~ 277 (359)
.+.|+++++.|..
T Consensus 154 -~~~IVVfTh~d~~ 166 (313)
T TIGR00991 154 -RKSLVVLTHAQFS 166 (313)
T ss_pred -ccEEEEEECCccC
Confidence 3579999999964
No 296
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.37 E-value=0.0031 Score=57.16 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=39.4
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe-EEEEeeC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS-FILFLNK 273 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~-iiL~~NK 273 (359)
++..+.++|++|.- .... ...+.++.+++|+|.+. .-. ......+..+ .. .+.| +++++||
T Consensus 81 ~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~----------~~~-~~~~~i~~~l-~~---~g~p~vi~VvnK 142 (225)
T cd01882 81 KKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASF----------GFE-METFEFLNIL-QV---HGFPRVMGVLTH 142 (225)
T ss_pred CCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCc----------CCC-HHHHHHHHHH-HH---cCCCeEEEEEec
Confidence 34567889999853 2222 23478999999999875 111 1122333333 22 2356 4559999
Q ss_pred CCcch
Q psy14891 274 FDLFR 278 (359)
Q Consensus 274 ~Dl~~ 278 (359)
.|+..
T Consensus 143 ~D~~~ 147 (225)
T cd01882 143 LDLFK 147 (225)
T ss_pred cccCC
Confidence 99863
No 297
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.36 E-value=0.0013 Score=55.91 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=51.6
Q ss_pred ccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccC
Q psy14891 218 FDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKG 297 (359)
Q Consensus 218 f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g 297 (359)
.+++|.|++|+|.++.. ...- ..+...+.. ...+.|+++++||+|+..+..
T Consensus 6 l~~aD~il~VvD~~~p~--------~~~~----~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~---------------- 56 (157)
T cd01858 6 IDSSDVVIQVLDARDPM--------GTRC----KHVEEYLKK-EKPHKHLIFVLNKCDLVPTWV---------------- 56 (157)
T ss_pred hhhCCEEEEEEECCCCc--------cccC----HHHHHHHHh-ccCCCCEEEEEEchhcCCHHH----------------
Confidence 57899999999988610 0111 122222222 123579999999999854211
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 298 PDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 298 ~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
......++.+ ......+.+||+.+.++..+.+.+.+.
T Consensus 57 ----~~~~~~~~~~---------~~~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 57 ----TARWVKILSK---------EYPTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred ----HHHHHHHHhc---------CCcEEEEEeeccccccHHHHHHHHHHH
Confidence 1111222111 112334668999999998888877653
No 298
>KOG3905|consensus
Probab=97.34 E-value=0.0056 Score=57.52 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=43.5
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
.+|+++|.+|+|...--. +... | -++-.+||..+.....- ...--.++||++.+.||+.++.+
T Consensus 222 Gi~vlVV~TK~D~~s~le--ke~e-------y------rDehfdfiq~~lRkFCL--r~GaaLiyTSvKE~KNidllyKY 284 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLE--KEHE-------Y------RDEHFDFIQSHLRKFCL--RYGAALIYTSVKETKNIDLLYKY 284 (473)
T ss_pred CCcEEEEEeccchhhHhh--hcch-------h------hHHHHHHHHHHHHHHHH--HcCceeEEeecccccchHHHHHH
Confidence 359999999999743211 1111 1 23345555543322110 12344578999999999999999
Q ss_pred HHHHHHH
Q psy14891 344 VMDLVIK 350 (359)
Q Consensus 344 v~~~Il~ 350 (359)
|+..+..
T Consensus 285 ivhr~yG 291 (473)
T KOG3905|consen 285 IVHRSYG 291 (473)
T ss_pred HHHHhcC
Confidence 9987754
No 299
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.29 E-value=0.0015 Score=61.59 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=54.1
Q ss_pred hccCCcEEEEEEECCCCccccccCCccc-chHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccc
Q psy14891 217 CFDDVKAVLYVVALSGYDMTLLEDSSVN-RLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDF 295 (359)
Q Consensus 217 ~f~~~~~iifv~dls~yd~~l~ed~~~~-~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y 295 (359)
...++|.+++|+|+.+ .. ++...-.|+..+ .. .++|+++++||+||..+.-
T Consensus 75 i~anvD~vllV~d~~~----------p~~s~~~ldr~L~~~-~~---~~ip~iIVlNK~DL~~~~~-------------- 126 (287)
T cd01854 75 IAANVDQLVIVVSLNE----------PFFNPRLLDRYLVAA-EA---AGIEPVIVLTKADLLDDEE-------------- 126 (287)
T ss_pred EEEeCCEEEEEEEcCC----------CCCCHHHHHHHHHHH-HH---cCCCEEEEEEHHHCCChHH--------------
Confidence 4789999999999986 32 223222333322 22 3689999999999854211
Q ss_pred cCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 296 KGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 296 ~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
......+ +.. ..+.++++||+++.+++.++..+..
T Consensus 127 ------~~~~~~~----~~~------~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 127 ------EELELVE----ALA------LGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred ------HHHHHHH----HHh------CCCeEEEEECCCCccHHHHHhhhcc
Confidence 0011111 111 2245678999999999998887764
No 300
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.23 E-value=0.0096 Score=59.75 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=43.2
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
++||++|++|.|... .+. +.. +|.. ...+-...|++.--+. ...-.++||++...|+..++.+
T Consensus 196 Gipi~VV~tksD~~~-~Le-k~~-------~~~~--e~~DfIqq~LR~~cL~------yGAsL~yts~~~~~n~~~L~~y 258 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIE-TLE-KET-------DWKE--EHFDFIQQYLRTFCLK------YGASLIYTSVKEEKNLDLLYKY 258 (472)
T ss_pred CcceEEEEecccHHH-HHh-hhc-------ccch--hhHHHHHHHHHHHHHh------cCCeEEEeeccccccHHHHHHH
Confidence 369999999999765 330 110 1111 1223333344332222 3344567999999999999999
Q ss_pred HHHHHHHhh
Q psy14891 344 VMDLVIKIN 352 (359)
Q Consensus 344 v~~~Il~~~ 352 (359)
+...+....
T Consensus 259 i~h~l~~~~ 267 (472)
T PF05783_consen 259 ILHRLYGFP 267 (472)
T ss_pred HHHHhccCC
Confidence 877766543
No 301
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.22 E-value=0.0041 Score=57.27 Aligned_cols=126 Identities=12% Similarity=0.125 Sum_probs=77.8
Q ss_pred ceeeEEecCCccc-------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEE
Q psy14891 197 SIVNMVDVGGQRS-------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFIL 269 (359)
Q Consensus 197 ~~l~i~D~~Gq~~-------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL 269 (359)
-.+.+||++|-+. +|.....+....+-|+.+.+..| .-+.-....+..+...- .+.++++
T Consensus 87 ~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~d-----------raL~~d~~f~~dVi~~~--~~~~~i~ 153 (296)
T COG3596 87 ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADD-----------RALGTDEDFLRDVIILG--LDKRVLF 153 (296)
T ss_pred cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCC-----------ccccCCHHHHHHHHHhc--cCceeEE
Confidence 4678999999765 66677888889999999999887 33333456666665432 2378999
Q ss_pred EeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccC--CCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 270 FLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHN--SAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 270 ~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~--~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+.|-+|... +. +-=++.+. .......+|+..|=..+.+- +-++||+ .++-..=|++.+..++...
T Consensus 154 ~VtQ~D~a~-p~---------~~W~~~~~-~p~~a~~qfi~~k~~~~~~~~q~V~pV~~--~~~r~~wgl~~l~~ali~~ 220 (296)
T COG3596 154 VVTQADRAE-PG---------REWDSAGH-QPSPAIKQFIEEKAEALGRLFQEVKPVVA--VSGRLPWGLKELVRALITA 220 (296)
T ss_pred EEehhhhhc-cc---------cccccccC-CCCHHHHHHHHHHHHHHHHHHhhcCCeEE--eccccCccHHHHHHHHHHh
Confidence 999999643 11 11123332 23345666776654443311 1233432 3456777888777776655
Q ss_pred H
Q psy14891 348 V 348 (359)
Q Consensus 348 I 348 (359)
+
T Consensus 221 l 221 (296)
T COG3596 221 L 221 (296)
T ss_pred C
Confidence 4
No 302
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.20 E-value=0.0057 Score=57.97 Aligned_cols=134 Identities=15% Similarity=0.234 Sum_probs=83.7
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccc-------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHH
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRS-------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFE 254 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~-------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~ 254 (359)
.|..|+... ..+-.|.+=|++|-=. .--....+.+.+..+++|+|++..|. .+-.++...+..
T Consensus 195 ~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~-------~dp~~~~~~i~~ 264 (369)
T COG0536 195 VPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDG-------RDPIEDYQTIRN 264 (369)
T ss_pred cCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccC-------CCHHHHHHHHHH
Confidence 588887655 3456789999988421 11223345677899999999998432 222444444444
Q ss_pred HHHh-ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccC
Q psy14891 255 QVVN-NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATD 333 (359)
Q Consensus 255 ~i~~-~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d 333 (359)
++-. ++.+.+.|.+|++||+|+.... ...+.-.+++.+.+ .....++ .||.+
T Consensus 265 EL~~Y~~~L~~K~~ivv~NKiD~~~~~-------------------e~~~~~~~~l~~~~-------~~~~~~~-ISa~t 317 (369)
T COG0536 265 ELEKYSPKLAEKPRIVVLNKIDLPLDE-------------------EELEELKKALAEAL-------GWEVFYL-ISALT 317 (369)
T ss_pred HHHHhhHHhccCceEEEEeccCCCcCH-------------------HHHHHHHHHHHHhc-------CCCccee-eehhc
Confidence 4433 3567889999999999953211 11233333433321 1112222 99999
Q ss_pred CchHHHHHHHHHHHHHHhh
Q psy14891 334 TSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 334 ~~ni~~vf~~v~~~Il~~~ 352 (359)
+++++.+...+.+.+-...
T Consensus 318 ~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 318 REGLDELLRALAELLEETK 336 (369)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9999999999988876553
No 303
>PRK12288 GTPase RsgA; Reviewed
Probab=97.18 E-value=0.0025 Score=61.59 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=52.8
Q ss_pred cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCC
Q psy14891 219 DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGP 298 (359)
Q Consensus 219 ~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~ 298 (359)
.|+|.+++|++++. ..++...-.|+. .+. ..++|++|++||+||..+.-
T Consensus 119 ANvD~vlIV~s~~p----------~~s~~~Ldr~L~-~a~---~~~i~~VIVlNK~DL~~~~~----------------- 167 (347)
T PRK12288 119 ANIDQIVIVSAVLP----------ELSLNIIDRYLV-ACE---TLGIEPLIVLNKIDLLDDEG----------------- 167 (347)
T ss_pred EEccEEEEEEeCCC----------CCCHHHHHHHHH-HHH---hcCCCEEEEEECccCCCcHH-----------------
Confidence 45899999999775 233322222222 222 24689999999999864211
Q ss_pred CCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 299 DFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 299 ~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
.+...+++. .|.. ..+.++++||++++++..++..+..
T Consensus 168 ---~~~~~~~~~-~y~~------~g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 168 ---RAFVNEQLD-IYRN------IGYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred ---HHHHHHHHH-HHHh------CCCeEEEEeCCCCcCHHHHHHHHhh
Confidence 011111111 1211 2345688999999999999988865
No 304
>KOG0705|consensus
Probab=97.12 E-value=0.0026 Score=63.39 Aligned_cols=143 Identities=18% Similarity=0.183 Sum_probs=96.1
Q ss_pred chhhccCCCccCccccccccccccc-eeEEEEe-eCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCcccccc
Q psy14891 162 MERICDLKYVPNATDVLRARVRTNG-IIETNFR-LGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLE 239 (359)
Q Consensus 162 ~~ri~~~~y~Pt~~Dil~~r~~T~G-~~~~~~~-~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~e 239 (359)
+.|+....|.|.+. |--| +....+. -+..-+.+.|.||.. -..|-.-++++||||.+-+
T Consensus 47 vhr~ltgty~~~e~-------~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d------- 107 (749)
T KOG0705|consen 47 VHRYLTGTYTQDES-------PEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVED------- 107 (749)
T ss_pred eeeeccceeccccC-------CcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEecc-------
Confidence 56778888988772 4444 3333322 234778899999832 2346677899999999998
Q ss_pred CCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccC
Q psy14891 240 DSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHN 319 (359)
Q Consensus 240 d~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~ 319 (359)
.+++.....+...+.....-...|+++++.+ |....+. +.+ .....+.....+
T Consensus 108 ---~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtq-d~iS~~~--~rv-------------~~da~~r~l~~~-------- 160 (749)
T KOG0705|consen 108 ---EQSFQAVQALAHEMSSYRNISDLPLILVGTQ-DHISAKR--PRV-------------ITDDRARQLSAQ-------- 160 (749)
T ss_pred ---ccCHHHHHHHHhhcccccccccchHHhhcCc-chhhccc--ccc-------------cchHHHHHHHHh--------
Confidence 7777777777777766555567888888886 5443333 111 122223322222
Q ss_pred CCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 320 SAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 320 ~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
.+.+.+++|||+.|.|+..+|..+...++..
T Consensus 161 -~krcsy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 161 -MKRCSYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred -cCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 2557778999999999999999999887654
No 305
>PRK13796 GTPase YqeH; Provisional
Probab=97.05 E-value=0.003 Score=61.60 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=55.4
Q ss_pred cEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCC
Q psy14891 222 KAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFD 301 (359)
Q Consensus 222 ~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~ 301 (359)
..|++|+|+.++.. ++ ...+.... .+.|++|++||+|+.... ..
T Consensus 71 ~lIv~VVD~~D~~~---------s~---~~~L~~~~-----~~kpviLViNK~DLl~~~-------------------~~ 114 (365)
T PRK13796 71 ALVVNVVDIFDFNG---------SW---IPGLHRFV-----GNNPVLLVGNKADLLPKS-------------------VK 114 (365)
T ss_pred cEEEEEEECccCCC---------ch---hHHHHHHh-----CCCCEEEEEEchhhCCCc-------------------cC
Confidence 48899999988531 11 22233322 256899999999996422 23
Q ss_pred HHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 302 VDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 302 ~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
.+.+.+|+...+....- ....++.+||+++.||+++++.+.+.
T Consensus 115 ~~~i~~~l~~~~k~~g~---~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 115 KNKVKNWLRQEAKELGL---RPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHHHHHHHHHHHhcCC---CcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44555666654432210 11136789999999999999998653
No 306
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.026 Score=53.79 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=76.0
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
-|+-+....|.....+|-+-||+|++.|-+....=-.-++.+|+++|.-. .-+..+. -...+.. .+
T Consensus 72 ITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-----------Gvl~QTr-RHs~I~s--LL 137 (431)
T COG2895 72 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-----------GVLEQTR-RHSFIAS--LL 137 (431)
T ss_pred ceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-----------hhHHHhH-HHHHHHH--Hh
Confidence 36666667777788999999999999885544433455788999999642 1112111 1111211 12
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccC-CCCceEEEEeeccCCchHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHN-SAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~-~~~~i~~~~tsA~d~~ni~ 338 (359)
.=..++|..||+||.+= -++..+-|...|..+... .-+.+.+...||..|+||-
T Consensus 138 GIrhvvvAVNKmDLvdy----------------------~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 138 GIRHVVVAVNKMDLVDY----------------------SEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred CCcEEEEEEeeeccccc----------------------CHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 23468899999998641 123455566666665422 2345667789999999985
No 307
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.96 E-value=0.025 Score=54.99 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=55.1
Q ss_pred eeeEEecCCccccccchhhhcc-----CCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEee
Q psy14891 198 IVNMVDVGGQRSQRRKWIYCFD-----DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLN 272 (359)
Q Consensus 198 ~l~i~D~~Gq~~~r~~w~~~f~-----~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~N 272 (359)
++.+||++|-..-+-....|+. ..|.+|++.+ .|+.+.-.++-..+.. .+.|+++|-+
T Consensus 87 nv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s--------------~rf~~ndv~La~~i~~---~gK~fyfVRT 149 (376)
T PF05049_consen 87 NVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS--------------ERFTENDVQLAKEIQR---MGKKFYFVRT 149 (376)
T ss_dssp TEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES--------------SS--HHHHHHHHHHHH---TT-EEEEEE-
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC--------------CCCchhhHHHHHHHHH---cCCcEEEEEe
Confidence 5789999997665555566654 4576666544 4555554443333333 4789999999
Q ss_pred CCCc--chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 273 KFDL--FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 273 K~Dl--~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
|+|. ..++- ..| ..|. .. .-.+...+.+.+.+.... -..-.+|.+|..+-..-. |-.+.+++.+
T Consensus 150 KvD~Dl~~~~~---~~p--~~f~---~e-~~L~~IR~~c~~~L~k~g---v~~P~VFLVS~~dl~~yD--Fp~L~~tL~~ 215 (376)
T PF05049_consen 150 KVDSDLYNERR---RKP--RTFN---EE-KLLQEIRENCLENLQKAG---VSEPQVFLVSSFDLSKYD--FPKLEETLEK 215 (376)
T ss_dssp -HHHHHHHHHC---C-S--TT-----HH-THHHHHHHHHHHHHHCTT----SS--EEEB-TTTTTSTT--HHHHHHHHHH
T ss_pred cccccHhhhhc---cCC--cccC---HH-HHHHHHHHHHHHHHHHcC---CCcCceEEEeCCCcccCC--hHHHHHHHHH
Confidence 9995 33321 111 0011 11 123344444444443321 122345678887755432 5555555543
No 308
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.95 E-value=0.0034 Score=52.45 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=30.3
Q ss_pred hccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcch
Q psy14891 217 CFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFR 278 (359)
Q Consensus 217 ~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~ 278 (359)
..+++|++++|+|..+ ..... ...+...+... ..+.|+++++||+|+..
T Consensus 8 ~i~~aD~vl~ViD~~~----------p~~~~--~~~l~~~l~~~-~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 8 VVERSDIVVQIVDARN----------PLLFR--PPDLERYVKEV-DPRKKNILLLNKADLLT 56 (141)
T ss_pred HHhhCCEEEEEEEccC----------CcccC--CHHHHHHHHhc-cCCCcEEEEEechhcCC
Confidence 3578999999999876 11101 11222222211 14689999999999854
No 309
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.93 E-value=0.05 Score=47.78 Aligned_cols=55 Identities=20% Similarity=0.138 Sum_probs=35.6
Q ss_pred eEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 266 SFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 266 ~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
.=+++.||.||... + | -+.+....-+++ ++ -...+++||+++++++.++++.+.
T Consensus 144 aDllVInK~DLa~~-v---------------~--~dlevm~~da~~----~n----p~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 144 ADLLVINKTDLAPY-V---------------G--ADLEVMARDAKE----VN----PEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred eeEEEEehHHhHHH-h---------------C--ccHHHHHHHHHH----hC----CCCCEEEEeCCCCcCHHHHHHHHH
Confidence 34677899998642 2 1 344544444443 11 234567899999999999877665
Q ss_pred H
Q psy14891 346 D 346 (359)
Q Consensus 346 ~ 346 (359)
.
T Consensus 198 ~ 198 (202)
T COG0378 198 P 198 (202)
T ss_pred h
Confidence 4
No 310
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.92 E-value=0.0037 Score=61.36 Aligned_cols=112 Identities=16% Similarity=0.237 Sum_probs=70.5
Q ss_pred EEEeeCCceeeEEecCCcccc---------ccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc
Q psy14891 190 TNFRLGESIVNMVDVGGQRSQ---------RRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR 260 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~~---------r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~ 260 (359)
....+.+..|.+.||||-+.. +.+...-++.||++|||+|... -+...-+.+-+++.
T Consensus 44 ~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~------------Git~~D~~ia~~Lr-- 109 (444)
T COG1160 44 GDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGRE------------GITPADEEIAKILR-- 109 (444)
T ss_pred ceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCC------------CCCHHHHHHHHHHH--
Confidence 344566788999999997632 2233345788999999999764 11222222233332
Q ss_pred CCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHH
Q psy14891 261 YFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 261 ~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~v 340 (359)
-.+.|++|+.||+|-..... .+.+|-.- . --.++.+||..+.++..+
T Consensus 110 -~~~kpviLvvNK~D~~~~e~----------------------~~~efysl-----G-----~g~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 110 -RSKKPVILVVNKIDNLKAEE----------------------LAYEFYSL-----G-----FGEPVPISAEHGRGIGDL 156 (444)
T ss_pred -hcCCCEEEEEEcccCchhhh----------------------hHHHHHhc-----C-----CCCceEeehhhccCHHHH
Confidence 23689999999999753221 12222111 0 012466999999999999
Q ss_pred HHHHHHHH
Q psy14891 341 FHAVMDLV 348 (359)
Q Consensus 341 f~~v~~~I 348 (359)
.+++...+
T Consensus 157 ld~v~~~l 164 (444)
T COG1160 157 LDAVLELL 164 (444)
T ss_pred HHHHHhhc
Confidence 88887765
No 311
>PRK09602 translation-associated GTPase; Reviewed
Probab=96.85 E-value=0.0058 Score=60.18 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=26.7
Q ss_pred ceeeEEecCCc----cccccc---hhhhccCCcEEEEEEECCC
Q psy14891 197 SIVNMVDVGGQ----RSQRRK---WIYCFDDVKAVLYVVALSG 232 (359)
Q Consensus 197 ~~l~i~D~~Gq----~~~r~~---w~~~f~~~~~iifv~dls~ 232 (359)
..+++||++|. ...+.+ .....++++++++|+|.+.
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 56899999994 333333 3334899999999999984
No 312
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.77 E-value=0.0044 Score=53.57 Aligned_cols=87 Identities=21% Similarity=0.100 Sum_probs=52.4
Q ss_pred hhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCcccccccc
Q psy14891 215 IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSD 294 (359)
Q Consensus 215 ~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~ 294 (359)
.....++|.|++|+|.++-.. ..- ..... . ..+.|+++++||+|+..+..
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~--------~~~---~~i~~-~-----~~~k~~ilVlNK~Dl~~~~~------------- 63 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLS--------SRN---PLLEK-I-----LGNKPRIIVLNKADLADPKK------------- 63 (171)
T ss_pred HHHHhhCCEEEEEeeccCccC--------cCC---hhhHh-H-----hcCCCEEEEEehhhcCChHH-------------
Confidence 345689999999999876110 000 11111 1 13468999999999853211
Q ss_pred ccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 295 FKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 295 y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
.....+|+.. ....++.+||+++.+++.+.+.+...+
T Consensus 64 -------~~~~~~~~~~----------~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 64 -------TKKWLKYFES----------KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred -------HHHHHHHHHh----------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 1111122221 112356799999999999888887764
No 313
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.68 E-value=0.013 Score=49.60 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=47.9
Q ss_pred cEEEEEEECCCCccccccCCcccchHHHHHHHH-HHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCC
Q psy14891 222 KAVLYVVALSGYDMTLLEDSSVNRLDESLNLFE-QVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDF 300 (359)
Q Consensus 222 ~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~-~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~ 300 (359)
|.+|+|+|..+ .....+ .++. ..+. ..+.|+++++||+|+..+..
T Consensus 1 Dvvl~VvD~~~----------p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~------------------- 46 (155)
T cd01849 1 DVILEVLDARD----------PLGTRS--PDIERVLIK---EKGKKLILVLNKADLVPKEV------------------- 46 (155)
T ss_pred CEEEEEEeccC----------CccccC--HHHHHHHHh---cCCCCEEEEEechhcCCHHH-------------------
Confidence 57899999876 111111 1222 2222 24689999999999853211
Q ss_pred CHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 301 DVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 301 ~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
...++. .|... .....+.+||+++.++..+.+.+...
T Consensus 47 ----~~~~~~-~~~~~-----~~~~ii~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 47 ----LRKWLA-YLRHS-----YPTIPFKISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred ----HHHHHH-HHHhh-----CCceEEEEeccCCcChhhHHHHHHHH
Confidence 112221 11111 12235679999999999999887654
No 314
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0011 Score=57.86 Aligned_cols=21 Identities=48% Similarity=0.814 Sum_probs=19.0
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.||++||++||||||+.|.+-
T Consensus 1 ~riiilG~pGaGK~T~A~~La 21 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLA 21 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999873
No 315
>PRK08118 topology modulation protein; Reviewed
Probab=96.60 E-value=0.0013 Score=56.92 Aligned_cols=20 Identities=60% Similarity=0.969 Sum_probs=18.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
||+++|++||||||+.|++-
T Consensus 3 rI~I~G~~GsGKSTlak~L~ 22 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLG 22 (167)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999985
No 316
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.50 E-value=0.0018 Score=52.22 Aligned_cols=20 Identities=45% Similarity=0.640 Sum_probs=18.2
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.|+|.|++||||||+.|++.
T Consensus 1 vI~I~G~~gsGKST~a~~La 20 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELA 20 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999985
No 317
>PRK07261 topology modulation protein; Provisional
Probab=96.44 E-value=0.0018 Score=56.16 Aligned_cols=20 Identities=45% Similarity=0.725 Sum_probs=18.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
||+++|++||||||+.+++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 79999999999999999974
No 318
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.27 E-value=0.021 Score=50.98 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=39.4
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
..|.++++||+|+..+.- ...+...+++++. + ....++.+||++++||..+|+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~------------------~~~~~~~~~l~~~----~----~~~~i~~~Sa~~g~gv~~l~~~ 201 (207)
T TIGR00073 148 KEADLIVINKADLAEAVG------------------FDVEKMKADAKKI----N----PEAEIILMSLKTGEGLDEWLEF 201 (207)
T ss_pred hhCCEEEEEHHHccccch------------------hhHHHHHHHHHHh----C----CCCCEEEEECCCCCCHHHHHHH
Confidence 457799999999864211 1233444444432 1 2355789999999999999998
Q ss_pred HHHH
Q psy14891 344 VMDL 347 (359)
Q Consensus 344 v~~~ 347 (359)
+.+.
T Consensus 202 i~~~ 205 (207)
T TIGR00073 202 LEGQ 205 (207)
T ss_pred HHHh
Confidence 8763
No 319
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.27 E-value=0.016 Score=54.21 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=52.4
Q ss_pred hhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccc
Q psy14891 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDF 295 (359)
Q Consensus 216 ~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y 295 (359)
...+.+|.||+|+|..+ ..... . ..+...+ .+.|+++|+||+|+..+..
T Consensus 17 ~~l~~aDvVl~V~Dar~----------p~~~~-~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~-------------- 65 (276)
T TIGR03596 17 EKLKLVDVVIEVLDARI----------PLSSR-N-PMIDEIR-----GNKPRLIVLNKADLADPAV-------------- 65 (276)
T ss_pred HHHhhCCEEEEEEeCCC----------CCCCC-C-hhHHHHH-----CCCCEEEEEEccccCCHHH--------------
Confidence 45689999999999865 10000 0 1122222 2579999999999853211
Q ss_pred cCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 296 KGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 296 ~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
.+...+++.+ ....++++||+++.+++.+.+.+.+.+
T Consensus 66 ------~~~~~~~~~~----------~~~~vi~iSa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 66 ------TKQWLKYFEE----------KGIKALAINAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred ------HHHHHHHHHH----------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 1122223221 112356799999999999888877665
No 320
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.16 E-value=0.0042 Score=44.28 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEeccCCCchhHHHhhhHhhcC
Q psy14891 38 ILLLGAGESGKSTLVKQMKIIHN 60 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l~~ 60 (359)
.++.|+.||||||++..|..+--
T Consensus 26 tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 79999999999999999986543
No 321
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.15 E-value=0.0041 Score=53.38 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.5
Q ss_pred eeEEEeccCCCchhHHHhhhHhhcC
Q psy14891 36 IKILLLGAGESGKSTLVKQMKIIHN 60 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~l~~ 60 (359)
-.+++.|++||||||++|++-.+-.
T Consensus 30 e~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccC
Confidence 3689999999999999999986644
No 322
>COG4639 Predicted kinase [General function prediction only]
Probab=96.09 E-value=0.0054 Score=51.82 Aligned_cols=17 Identities=53% Similarity=0.765 Sum_probs=15.9
Q ss_pred EEEeccCCCchhHHHhh
Q psy14891 38 ILLLGAGESGKSTLVKQ 54 (359)
Q Consensus 38 vLllG~~~sGKST~~kq 54 (359)
|+|.|+++|||||++|+
T Consensus 5 vvL~G~~~sGKsT~ak~ 21 (168)
T COG4639 5 VVLRGASGSGKSTFAKE 21 (168)
T ss_pred EEEecCCCCchhHHHHH
Confidence 67889999999999998
No 323
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.06 E-value=0.19 Score=47.53 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=31.5
Q ss_pred EEeeCCceeeEEecCC----ccccc---cchhhhccCCcEEEEEEECCC
Q psy14891 191 NFRLGESIVNMVDVGG----QRSQR---RKWIYCFDDVKAVLYVVALSG 232 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~G----q~~~r---~~w~~~f~~~~~iifv~dls~ 232 (359)
-+.+++..+|+.|++| +..-| +....--++||.||+|.|+..
T Consensus 104 ~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 104 MLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred eEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCC
Confidence 3556889999999985 33333 445566799999999999985
No 324
>PRK06217 hypothetical protein; Validated
Probab=96.00 E-value=0.0043 Score=54.26 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.2
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.||+|.|.+||||||+.+++.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~ 22 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALA 22 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999985
No 325
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.015 Score=56.73 Aligned_cols=75 Identities=23% Similarity=0.382 Sum_probs=58.4
Q ss_pred eEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 188 IETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 188 ~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
...+|.+.+..+++.||+|++.|..-...-+..||++|.|+|... --=...+++|+ +|. +.++||
T Consensus 72 SVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAK-----------GiE~qT~KLfe-Vcr---lR~iPI 136 (528)
T COG4108 72 SVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK-----------GIEPQTLKLFE-VCR---LRDIPI 136 (528)
T ss_pred eEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEeccc-----------CccHHHHHHHH-HHh---hcCCce
Confidence 456788899999999999999887666666778999999999885 11134566664 454 468999
Q ss_pred EEEeeCCCcc
Q psy14891 268 ILFLNKFDLF 277 (359)
Q Consensus 268 iL~~NK~Dl~ 277 (359)
+=|.||.|..
T Consensus 137 ~TFiNKlDR~ 146 (528)
T COG4108 137 FTFINKLDRE 146 (528)
T ss_pred EEEeeccccc
Confidence 9999999963
No 326
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.96 E-value=0.0045 Score=51.31 Aligned_cols=19 Identities=53% Similarity=0.732 Sum_probs=17.4
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
|++.|++||||||+++++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999975
No 327
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=95.89 E-value=0.028 Score=52.94 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=52.9
Q ss_pred hhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccc
Q psy14891 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDF 295 (359)
Q Consensus 216 ~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y 295 (359)
.....+|.||+|+|..+- ...+- ..+...+ .+.|+++++||+|+..+..
T Consensus 20 ~~l~~aDvIL~VvDar~p--------~~~~~----~~l~~~~-----~~kp~iiVlNK~DL~~~~~-------------- 68 (287)
T PRK09563 20 ENLKLVDVVIEVLDARIP--------LSSEN----PMIDKII-----GNKPRLLILNKSDLADPEV-------------- 68 (287)
T ss_pred HHhhhCCEEEEEEECCCC--------CCCCC----hhHHHHh-----CCCCEEEEEEchhcCCHHH--------------
Confidence 356889999999998651 00110 1222222 2578999999999853211
Q ss_pred cCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 296 KGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 296 ~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
.+...+|+.+ ....+..+||+++.+++.+.+.+...+
T Consensus 69 ------~~~~~~~~~~----------~~~~vi~vSa~~~~gi~~L~~~l~~~l 105 (287)
T PRK09563 69 ------TKKWIEYFEE----------QGIKALAINAKKGQGVKKILKAAKKLL 105 (287)
T ss_pred ------HHHHHHHHHH----------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 1222333322 123456789999999999888877665
No 328
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=95.78 E-value=0.021 Score=59.90 Aligned_cols=83 Identities=18% Similarity=0.134 Sum_probs=63.6
Q ss_pred cccccceeEEEEeeCC-ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc
Q psy14891 181 RVRTNGIIETNFRLGE-SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259 (359)
Q Consensus 181 r~~T~G~~~~~~~~~~-~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~ 259 (359)
|.-|+.....++.+++ ..+++.||+|+-.|-.--..-.+-+|++|.|+|..+ --...+-..|.....
T Consensus 59 RGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdave-----------GV~~QTEtv~rqa~~- 126 (697)
T COG0480 59 RGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVE-----------GVEPQTETVWRQADK- 126 (697)
T ss_pred cCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCC-----------CeeecHHHHHHHHhh-
Confidence 3445555566777785 999999999998887666667788999999999886 333445666777655
Q ss_pred cCCCCCeEEEEeeCCCcch
Q psy14891 260 RYFREASFILFLNKFDLFR 278 (359)
Q Consensus 260 ~~~~~~~iiL~~NK~Dl~~ 278 (359)
.++|.++|.||+|...
T Consensus 127 ---~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 127 ---YGVPRILFVNKMDRLG 142 (697)
T ss_pred ---cCCCeEEEEECccccc
Confidence 3789999999999753
No 329
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=95.65 E-value=0.37 Score=47.51 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=22.8
Q ss_pred HhhhcceeEEEeccCCCchhHHHhhh
Q psy14891 30 LQEKHVIKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 30 ~~~~~~~kvLllG~~~sGKST~~kqm 55 (359)
++....+-|-++|+-.+|||||+|.+
T Consensus 12 ~RT~G~IyIGvvGpvrtGKSTfIn~f 37 (492)
T TIGR02836 12 ERTQGDIYIGVVGPVRTGKSTFIKKF 37 (492)
T ss_pred HHhCCcEEEEEEcCCCCChHHHHHHH
Confidence 45567899999999999999999886
No 330
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.61 E-value=0.0072 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.3
Q ss_pred eEEEeccCCCchhHHHhhhHhhc
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~ 59 (359)
.+.++|++||||||+++-+-.+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 68899999999999999887664
No 331
>KOG1533|consensus
Probab=95.58 E-value=0.0064 Score=54.72 Aligned_cols=123 Identities=17% Similarity=0.146 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhccccccCcchhHHhhcchhhccCCCccCccccccccccccceeEEEEeeCCceeeEEec
Q psy14891 125 DVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDV 204 (359)
Q Consensus 125 ~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~Pt~~Dil~~r~~T~G~~~~~~~~~~~~l~i~D~ 204 (359)
+.+-.|..+-.-..+++-+.-.+.-.+.-+++|+-.+++.+... -.|. .-.+-++|.
T Consensus 48 ~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~idwl~~~-l~~~----------------------~~~Y~lFDc 104 (290)
T KOG1533|consen 48 ECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEANIDWLLEK-LKPL----------------------TDHYVLFDC 104 (290)
T ss_pred CCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhhhHHHHHH-hhhc----------------------cCcEEEEeC
Confidence 44555666666666776665555556666677777777655331 1110 124668999
Q ss_pred CCcccc----ccchh--hhccCCcEEEEEEECCCCccccccCCcccchH-HHHHHHHHHHhccCCCCCeEEEEeeCCCcc
Q psy14891 205 GGQRSQ----RRKWI--YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLD-ESLNLFEQVVNNRYFREASFILFLNKFDLF 277 (359)
Q Consensus 205 ~Gq~~~----r~~w~--~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~-es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~ 277 (359)
+||-.. ...|. .+.+.-+.=+.++.+.|- ..--+ ...+- -.+.-+..++. ...|-+-++.|+|++
T Consensus 105 PGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs--~ycs~--p~~~iS~lL~sl~tMl~----melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 105 PGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDS--HYCSD--PSKFISSLLVSLATMLH----MELPHVNVLSKADLL 176 (290)
T ss_pred CCcEEEEeccchHHHHHHHHHHcCceEEEEEeeec--eeeCC--hHHHHHHHHHHHHHHHh----hcccchhhhhHhHHH
Confidence 999532 22332 123332222333333320 00001 12222 22333334433 356778889999998
Q ss_pred h
Q psy14891 278 R 278 (359)
Q Consensus 278 ~ 278 (359)
.
T Consensus 177 ~ 177 (290)
T KOG1533|consen 177 K 177 (290)
T ss_pred H
Confidence 6
No 332
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=95.56 E-value=0.16 Score=52.80 Aligned_cols=81 Identities=17% Similarity=0.090 Sum_probs=47.8
Q ss_pred EEEEeeCCceeeEEecCCccccc------cch----hhhcc--CCcEEEEEEECCCCccccccCCcccchHHHHHHHHHH
Q psy14891 189 ETNFRLGESIVNMVDVGGQRSQR------RKW----IYCFD--DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQV 256 (359)
Q Consensus 189 ~~~~~~~~~~l~i~D~~Gq~~~r------~~w----~~~f~--~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i 256 (359)
.......+..+.++||+|-.... ..+ ..++. ++++||||..++.+..- ..-..+++.+..+
T Consensus 158 ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D-------~eD~~aLr~Iq~l 230 (763)
T TIGR00993 158 EIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRD-------SNDLPLLRTITDV 230 (763)
T ss_pred EEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcccc-------HHHHHHHHHHHHH
Confidence 33344567889999999965321 111 12333 58999999998752110 0011356666666
Q ss_pred HhccCCCCCeEEEEeeCCCcch
Q psy14891 257 VNNRYFREASFILFLNKFDLFR 278 (359)
Q Consensus 257 ~~~~~~~~~~iiL~~NK~Dl~~ 278 (359)
+-..... -+||+++..|...
T Consensus 231 FG~~Iwk--~tIVVFThgD~lp 250 (763)
T TIGR00993 231 LGPSIWF--NAIVTLTHAASAP 250 (763)
T ss_pred hCHHhHc--CEEEEEeCCccCC
Confidence 6544332 3677889988764
No 333
>PRK03839 putative kinase; Provisional
Probab=95.43 E-value=0.0095 Score=51.80 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=18.3
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
+|+|+|.+||||||+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La 21 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLA 21 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999874
No 334
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.36 E-value=0.011 Score=47.65 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=17.3
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
|+|-|++||||||+++.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~ 19 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELA 19 (129)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 6899999999999999884
No 335
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.24 E-value=0.011 Score=51.70 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=18.1
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.++|+|++||||||+++.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~ 23 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALR 23 (186)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999999884
No 336
>PRK14532 adenylate kinase; Provisional
Probab=95.22 E-value=0.012 Score=51.45 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=18.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
+|+++|++||||||+.+.+-
T Consensus 2 ~i~~~G~pGsGKsT~a~~la 21 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLV 21 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999998873
No 337
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.17 E-value=0.014 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.6
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
..+||+|+|++||||||+.+++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La 27 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILS 27 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999874
No 338
>KOG0458|consensus
Probab=95.16 E-value=0.061 Score=54.34 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=77.7
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
.-|.-+....|+-....+.|.|.+|++.|-+-.+.=-..+|+.|+|+|.+- +..-..-...+...|...++..+
T Consensus 240 GvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~L----- 313 (603)
T KOG0458|consen 240 GVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSL----- 313 (603)
T ss_pred ceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHc-----
Confidence 344445566777777899999999988886655554556789999999873 11100001123344444444443
Q ss_pred CCCCeEEEEeeCCCcch---hhhhhcCCccccccccccCCCCC-HHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 262 FREASFILFLNKFDLFR---EKILYSGRHLRYYLSDFKGPDFD-VDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~---~k~~~~~~~l~~~fp~y~g~~~~-~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
.-..+++..||+|+.. +|. .. ......|+++.+ .-....+.+..+|+..|+|+
T Consensus 314 -gi~qlivaiNKmD~V~Wsq~RF------------------~eIk~~l~~fL~~~~----gf~es~v~FIPiSGl~GeNL 370 (603)
T KOG0458|consen 314 -GISQLIVAINKMDLVSWSQDRF------------------EEIKNKLSSFLKESC----GFKESSVKFIPISGLSGENL 370 (603)
T ss_pred -CcceEEEEeecccccCccHHHH------------------HHHHHHHHHHHHHhc----CcccCCcceEecccccCCcc
Confidence 2457899999999853 222 01 112233333321 11124577888999999997
Q ss_pred HHH
Q psy14891 338 QTV 340 (359)
Q Consensus 338 ~~v 340 (359)
...
T Consensus 371 ~k~ 373 (603)
T KOG0458|consen 371 IKI 373 (603)
T ss_pred ccc
Confidence 654
No 339
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.13 E-value=0.013 Score=50.80 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.3
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
-++|+|++||||||+.+++--
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998743
No 340
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.11 E-value=0.013 Score=50.87 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=17.4
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
|+++|++||||||+.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la 20 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIV 20 (183)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999874
No 341
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.03 E-value=0.013 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=17.1
Q ss_pred eEEEeccCCCchhHHHhhhHhh
Q psy14891 37 KILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l 58 (359)
||.|.|+.++||||+++.+.-.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999998643
No 342
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.03 E-value=0.014 Score=52.16 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=18.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
||+++|++||||||+.+++.
T Consensus 1 rI~i~G~pGsGKsT~a~~La 20 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIA 20 (210)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
No 343
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.02 E-value=0.018 Score=41.88 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=18.2
Q ss_pred EEEeccCCCchhHHHhhhHhh
Q psy14891 38 ILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l 58 (359)
+.+.|.++|||||+.+.+.-.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999998644
No 344
>PRK14530 adenylate kinase; Provisional
Probab=95.01 E-value=0.015 Score=52.22 Aligned_cols=20 Identities=45% Similarity=0.662 Sum_probs=18.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
+|+|+|++||||||+.+.+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999884
No 345
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.95 E-value=0.015 Score=50.81 Aligned_cols=20 Identities=45% Similarity=0.695 Sum_probs=18.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
+|+|+|++||||||+.+++.
T Consensus 1 ~I~i~G~pGsGKst~a~~La 20 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLA 20 (194)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999874
No 346
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.93 E-value=0.017 Score=46.00 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=17.6
Q ss_pred eeEEEeccCCCchhHHHhhh
Q psy14891 36 IKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqm 55 (359)
-.++|+|++||||||+++.+
T Consensus 16 e~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 16 VGVLITGDSGIGKTELALEL 35 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHh
Confidence 35899999999999999875
No 347
>PRK13949 shikimate kinase; Provisional
Probab=94.91 E-value=0.017 Score=49.95 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=18.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
+|+|+|+.||||||+.+.+-
T Consensus 3 ~I~liG~~GsGKstl~~~La 22 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALA 22 (169)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999873
No 348
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.87 E-value=0.019 Score=47.27 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.2
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.+.|+|+.||||||+++-+-
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHT
T ss_pred CEEEEEccCCCccccceeeec
Confidence 368999999999999998763
No 349
>PRK08233 hypothetical protein; Provisional
Probab=94.85 E-value=0.019 Score=49.62 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.1
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.-|.+.|++||||||+.+++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~ 24 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLT 24 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 456778999999999999874
No 350
>PRK14531 adenylate kinase; Provisional
Probab=94.83 E-value=0.018 Score=50.29 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.9
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.+|+++|++||||||+.+.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la 23 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLC 23 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999998874
No 351
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.81 E-value=0.018 Score=48.30 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=17.2
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
++|.|.+||||||+.+++.
T Consensus 2 i~l~G~~GsGKST~a~~l~ 20 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALA 20 (150)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6788999999999999874
No 352
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.78 E-value=0.018 Score=50.02 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.|+++|++||||||+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57889999999999998874
No 353
>PRK02496 adk adenylate kinase; Provisional
Probab=94.78 E-value=0.02 Score=49.95 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.1
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.|++++|++||||||+.+.+.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la 22 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLA 22 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999874
No 354
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.76 E-value=0.017 Score=49.21 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=17.2
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
++|.|++||||||+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~ 19 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALA 19 (163)
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 5789999999999999975
No 355
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.71 E-value=0.37 Score=45.63 Aligned_cols=111 Identities=14% Similarity=0.033 Sum_probs=59.6
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.++.+.|.||+|-.. ........++.++++.+... -.+.......+ .+.|.++++||+
T Consensus 125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~-------------~~el~~~~~~l------~~~~~ivv~NK~ 182 (300)
T TIGR00750 125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGT-------------GDDLQGIKAGL------MEIADIYVVNKA 182 (300)
T ss_pred CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCc-------------cHHHHHHHHHH------hhhccEEEEEcc
Confidence 457788999988431 11234566777777743221 12222222222 356779999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccC-CCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHN-SAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~-~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
|+....- .......+......+... ......++.+||+++++|..+++.+.+.
T Consensus 183 Dl~~~~~--------------------~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 183 DGEGATN--------------------VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred cccchhH--------------------HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 9864321 000010000000001000 1112346889999999999999999876
No 356
>KOG3887|consensus
Probab=94.69 E-value=0.62 Score=42.44 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=74.4
Q ss_pred ceeeEEecCCccccccc---hhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc--cCCCCCeEEEEe
Q psy14891 197 SIVNMVDVGGQRSQRRK---WIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN--RYFREASFILFL 271 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~---w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~--~~~~~~~iiL~~ 271 (359)
++|++||.+||-.+-.- ....|+++-+.|||+|.-+ ...+++..+...+.. +..+++.+=+|.
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd------------dy~eala~L~~~v~raykvNp~in~EVfi 142 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD------------DYMEALARLHMTVERAYKVNPNINFEVFI 142 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechH------------HHHHHHHHHHHHhhheeecCCCceEEEEE
Confidence 67899999999765332 2345899999999999765 344555544444432 234577888999
Q ss_pred eCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 272 NKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 272 NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
-|.|-+.+.. +...- . +-.+.+.+-+...-+ .+-.+.+|.||--| ..|=++|..|+..++.
T Consensus 143 HKvDGLsdd~--kietq---------r-dI~qr~~d~l~d~gl-----e~v~vsf~LTSIyD-HSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 143 HKVDGLSDDF--KIETQ---------R-DIHQRTNDELADAGL-----EKVQVSFYLTSIYD-HSIFEAFSKVVQKLIP 203 (347)
T ss_pred EeccCCchhh--hhhhH---------H-HHHHHhhHHHHhhhh-----ccceEEEEEeeecc-hHHHHHHHHHHHHHhh
Confidence 9999775433 11000 0 001112222222111 13567888898765 5677788888777654
No 357
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.69 E-value=0.025 Score=47.11 Aligned_cols=21 Identities=43% Similarity=0.533 Sum_probs=18.1
Q ss_pred EEEeccCCCchhHHHhhhHhh
Q psy14891 38 ILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l 58 (359)
++|+|++||||||+++++.-.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 578999999999999988543
No 358
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.68 E-value=0.022 Score=45.81 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.0
Q ss_pred eeEEEeccCCCchhHHHhhhHh
Q psy14891 36 IKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~ 57 (359)
..++|.|++||||||+++.+-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 3689999999999999988743
No 359
>KOG1143|consensus
Probab=94.68 E-value=0.096 Score=50.33 Aligned_cols=121 Identities=15% Similarity=0.207 Sum_probs=65.3
Q ss_pred eeeEEecCCccccccchhhhccC--CcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 198 IVNMVDVGGQRSQRRKWIYCFDD--VKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 198 ~l~i~D~~Gq~~~r~~w~~~f~~--~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
-+.+.|.+|+.+|.+-..+-+.+ .+...+|++... .......|.+-+...+ ++|++++.+|+|
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~--------Gi~~tTrEHLgl~~AL-------~iPfFvlvtK~D 314 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADR--------GITWTTREHLGLIAAL-------NIPFFVLVTKMD 314 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCC--------CCccccHHHHHHHHHh-------CCCeEEEEEeec
Confidence 35689999999998777765443 356666666443 1122334444443332 689999999999
Q ss_pred cchhh-hhhcCCccccccccccC---C--CCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHH
Q psy14891 276 LFREK-ILYSGRHLRYYLSDFKG---P--DFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQT 339 (359)
Q Consensus 276 l~~~k-~~~~~~~l~~~fp~y~g---~--~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~ 339 (359)
+.... +.+...+|+.....-.- | ..+.++|.+-..+.- . ..-+..+-.|...|++.+-
T Consensus 315 l~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~-----s-~nivPif~vSsVsGegl~l 378 (591)
T KOG1143|consen 315 LVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELC-----S-GNIVPIFAVSSVSGEGLRL 378 (591)
T ss_pred cccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhc-----c-CCceeEEEEeecCccchhH
Confidence 97541 10011223322222110 0 123344444444311 1 2345566678888887653
No 360
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.67 E-value=0.021 Score=51.26 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.8
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.||+++|++||||||+.+.+.
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la 21 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIA 21 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999874
No 361
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=94.63 E-value=0.031 Score=55.80 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=25.3
Q ss_pred hcHHHHHHHHHhHHh----hhcceeEEEeccCCCchhHHHh
Q psy14891 17 RSDEIDKQLTQLSLQ----EKHVIKILLLGAGESGKSTLVK 53 (359)
Q Consensus 17 ~s~~Id~~l~~~~~~----~~~~~kvLllG~~~sGKST~~k 53 (359)
+-++|+..++.--+. ..+---+.|+|++||||||+++
T Consensus 10 i~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 10 VKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred echHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 345666666544333 2223358999999999999999
No 362
>KOG0468|consensus
Probab=94.59 E-value=0.058 Score=55.31 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=55.9
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
..-+++.||+|+-.|..-...-++-+|++++|+|..+ .-+...-.+++..+++ +.|+++++||.|
T Consensus 196 S~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~E-----------GVmlntEr~ikhaiq~----~~~i~vviNKiD 260 (971)
T KOG0468|consen 196 SYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAE-----------GVMLNTERIIKHAIQN----RLPIVVVINKVD 260 (971)
T ss_pred eeeeeeecCCCcccchHHHHHHhhhcceEEEEEEccc-----------CceeeHHHHHHHHHhc----cCcEEEEEehhH
Confidence 4779999999999998877888899999999999987 3344445555555554 679999999999
Q ss_pred cchhhh
Q psy14891 276 LFREKI 281 (359)
Q Consensus 276 l~~~k~ 281 (359)
.+-..+
T Consensus 261 RLilEL 266 (971)
T KOG0468|consen 261 RLILEL 266 (971)
T ss_pred HHHHHh
Confidence 865444
No 363
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.58 E-value=0.027 Score=49.01 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=21.0
Q ss_pred EEEeccCCCchhHHHhhhHhhcCC
Q psy14891 38 ILLLGAGESGKSTLVKQMKIIHND 61 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l~~~ 61 (359)
|-++|++|||||||++-+.++..+
T Consensus 35 isIIGsSGSGKSTfLRCiN~LE~P 58 (256)
T COG4598 35 ISIIGSSGSGKSTFLRCINFLEKP 58 (256)
T ss_pred EEEecCCCCchhHHHHHHHhhcCC
Confidence 678999999999999999887654
No 364
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.57 E-value=0.022 Score=49.29 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.++|+|++||||||+++.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALL 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998874
No 365
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.57 E-value=0.024 Score=45.87 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=16.8
Q ss_pred EEEeccCCCchhHHHhhh
Q psy14891 38 ILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 38 vLllG~~~sGKST~~kqm 55 (359)
|||.|++|+||||+++.+
T Consensus 1 ill~G~~G~GKT~l~~~l 18 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARAL 18 (132)
T ss_dssp EEEESSTTSSHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHH
Confidence 789999999999999887
No 366
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=94.54 E-value=0.36 Score=47.48 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=77.9
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
..|+-+....+...+..+.+.|+.|++.+-+--..-..+.+.+++|+|..+ .-....-|.+..++.
T Consensus 35 G~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~de--------Gl~~qtgEhL~iLdl------ 100 (447)
T COG3276 35 GITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADE--------GLMAQTGEHLLILDL------ 100 (447)
T ss_pred CceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCcc--------CcchhhHHHHHHHHh------
Confidence 345555556666667789999999998875444444567899999999764 112233344443333
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
+.....+++++|+|..++.. .+...+-|..... -.....+.|||+.+++|.++=
T Consensus 101 lgi~~giivltk~D~~d~~r--------------------~e~~i~~Il~~l~------l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 101 LGIKNGIIVLTKADRVDEAR--------------------IEQKIKQILADLS------LANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred cCCCceEEEEeccccccHHH--------------------HHHHHHHHHhhcc------cccccccccccccCCCHHHHH
Confidence 23345689999999875421 1222222222111 022334679999999999888
Q ss_pred HHHHHHH
Q psy14891 342 HAVMDLV 348 (359)
Q Consensus 342 ~~v~~~I 348 (359)
+.+.+..
T Consensus 155 ~~l~~L~ 161 (447)
T COG3276 155 NELIDLL 161 (447)
T ss_pred HHHHHhh
Confidence 8777665
No 367
>PRK01889 GTPase RsgA; Reviewed
Probab=94.54 E-value=0.067 Score=51.97 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=48.5
Q ss_pred ccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccC
Q psy14891 218 FDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKG 297 (359)
Q Consensus 218 f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g 297 (359)
-.|+|.+++|+++.. +.+... ++-+-..+. ..+++.+|++||+||..+ .
T Consensus 110 aANvD~vliV~s~~p-------~~~~~~----ldr~L~~a~---~~~i~piIVLNK~DL~~~-~---------------- 158 (356)
T PRK01889 110 AANVDTVFIVCSLNH-------DFNLRR----IERYLALAW---ESGAEPVIVLTKADLCED-A---------------- 158 (356)
T ss_pred EEeCCEEEEEEecCC-------CCChhH----HHHHHHHHH---HcCCCEEEEEEChhcCCC-H----------------
Confidence 468899999999852 111112 222222222 246677889999999642 1
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 298 PDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 298 ~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
++..+++... ...+.++.+||+++.++..+-..+.
T Consensus 159 -----~~~~~~~~~~--------~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 159 -----EEKIAEVEAL--------APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred -----HHHHHHHHHh--------CCCCcEEEEECCCCccHHHHHHHhh
Confidence 1122222221 1224456799999999888776664
No 368
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.50 E-value=0.022 Score=54.55 Aligned_cols=47 Identities=28% Similarity=0.455 Sum_probs=31.4
Q ss_pred EEEeccCCCchhHHHhhhHhhcC-------------CCCChhHhhh---------hh-hhhhhHHHHHHH
Q psy14891 38 ILLLGAGESGKSTLVKQMKIIHN-------------DGFTREELES---------FK-PTVMDNLLSSMK 84 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l~~-------------~g~~~~E~~~---------~~-~~I~~Nii~~~~ 84 (359)
+.|||++||||||+++-+-=+.. ....+++|.- |- -.|+.|+-=.++
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk 101 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLK 101 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhh
Confidence 78999999999999887763322 1244455541 22 258888866665
No 369
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.49 E-value=0.023 Score=50.47 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|+|+.+|||||++|++.
T Consensus 27 ~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 46899999999999999985
No 370
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.37 E-value=0.028 Score=50.14 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.3
Q ss_pred hcceeEEEeccCCCchhHHHhhhHh
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqmr~ 57 (359)
.+...|.|.|++||||||+.+.+.-
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988753
No 371
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.35 E-value=0.028 Score=48.69 Aligned_cols=19 Identities=32% Similarity=0.698 Sum_probs=17.4
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
|+|.|++||||||+.|.+.
T Consensus 5 i~l~G~~gsGKst~a~~l~ 23 (175)
T cd00227 5 IILNGGSSAGKSSIARALQ 23 (175)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999999885
No 372
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.34 E-value=0.027 Score=49.94 Aligned_cols=21 Identities=48% Similarity=0.661 Sum_probs=18.7
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.-|+|+|++||||||+++++.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~ 26 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALL 26 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999884
No 373
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.26 E-value=0.027 Score=50.32 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=18.8
Q ss_pred EEeccCCCchhHHHhhhHhhcC
Q psy14891 39 LLLGAGESGKSTLVKQMKIIHN 60 (359)
Q Consensus 39 LllG~~~sGKST~~kqmr~l~~ 60 (359)
-|+|++|||||||+|-+..++.
T Consensus 37 AlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 37 ALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred EEECCCCcCHHHHHHHHHhhcc
Confidence 6889999999999999876653
No 374
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.23 E-value=0.029 Score=50.05 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.5
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.-|.+.|++||||||+++.+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~ 27 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIY 27 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 457799999999999999985
No 375
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.22 E-value=0.037 Score=48.84 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=18.7
Q ss_pred EEEeccCCCchhHHHhhhHhhc
Q psy14891 38 ILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l~ 59 (359)
|.|.|++||||||+.+.+.-+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999985443
No 376
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.20 E-value=0.032 Score=48.66 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=17.7
Q ss_pred eeEEEeccCCCchhHHHhhh
Q psy14891 36 IKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqm 55 (359)
-.+.|+|+.||||||++|-+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999865
No 377
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.17 E-value=0.03 Score=50.60 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.4
Q ss_pred eEEEeccCCCchhHHHhhhHhh
Q psy14891 37 KILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l 58 (359)
-+.++|++||||||++.-+-.+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999998776544
No 378
>PF05729 NACHT: NACHT domain
Probab=94.16 E-value=0.031 Score=47.06 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=45.7
Q ss_pred hhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc--chhhhhhcCCccccc
Q psy14891 214 WIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL--FREKILYSGRHLRYY 291 (359)
Q Consensus 214 w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl--~~~k~~~~~~~l~~~ 291 (359)
|........-+++++| .+|+...++.. ..-.....++..++......++.+++...-... ..+.+ ...
T Consensus 73 ~~~~~~~~~~~llilD--glDE~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~--~~~----- 142 (166)
T PF05729_consen 73 LQELLEKNKRVLLILD--GLDELEEQDQS-QERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRL--KQA----- 142 (166)
T ss_pred HHHHHHcCCceEEEEe--chHhcccchhh-hHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhc--CCC-----
Confidence 3344444555667777 44454443322 112234556666666545667888777654433 12222 111
Q ss_pred cccccCCCCCHHHHHHHHHHHHh
Q psy14891 292 LSDFKGPDFDVDSGALFIQHKFA 314 (359)
Q Consensus 292 fp~y~g~~~~~~~a~~fi~~~f~ 314 (359)
..+.=..-+.+++.+|+++.|.
T Consensus 143 -~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 143 -QILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred -cEEEECCCCHHHHHHHHHHHhh
Confidence 1111112566788888888764
No 379
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.15 E-value=0.034 Score=50.98 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=18.4
Q ss_pred EEEeccCCCchhHHHhhhHhh
Q psy14891 38 ILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l 58 (359)
+.++|++||||||.+|.+.-+
T Consensus 30 ~vliGpSGsGKTTtLkMINrL 50 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRL 50 (309)
T ss_pred EEEECCCCCcHHHHHHHHhcc
Confidence 678999999999999998544
No 380
>PRK14528 adenylate kinase; Provisional
Probab=94.14 E-value=0.032 Score=48.93 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=18.5
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
+|+++|++||||||+.+.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la 22 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILC 22 (186)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
No 381
>PRK13695 putative NTPase; Provisional
Probab=94.13 E-value=0.033 Score=48.15 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=18.1
Q ss_pred eeEEEeccCCCchhHHHhhh
Q psy14891 36 IKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqm 55 (359)
+|++|.|++||||||+++.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i 20 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKI 20 (174)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 48999999999999999874
No 382
>KOG0464|consensus
Probab=94.09 E-value=0.029 Score=54.41 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=61.8
Q ss_pred cccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc
Q psy14891 181 RVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR 260 (359)
Q Consensus 181 r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~ 260 (359)
|.-|+--....|.+++..+.+.||+|+-.||---..|.+--++++-|+|.|. .--...+..|.+.-.
T Consensus 86 rgitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasa-----------gve~qtltvwrqadk-- 152 (753)
T KOG0464|consen 86 RGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASA-----------GVEAQTLTVWRQADK-- 152 (753)
T ss_pred cCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccC-----------Ccccceeeeehhccc--
Confidence 3344444456778899999999999999999989999999999999999886 111233445554322
Q ss_pred CCCCCeEEEEeeCCCcc
Q psy14891 261 YFREASFILFLNKFDLF 277 (359)
Q Consensus 261 ~~~~~~iiL~~NK~Dl~ 277 (359)
-+.|-+.|.||+|..
T Consensus 153 --~~ip~~~finkmdk~ 167 (753)
T KOG0464|consen 153 --FKIPAHCFINKMDKL 167 (753)
T ss_pred --cCCchhhhhhhhhhh
Confidence 368899999999964
No 383
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.04 E-value=0.033 Score=50.89 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=20.0
Q ss_pred eEEEeccCCCchhHHHhhhHhhc
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~ 59 (359)
.++++|+.||||||++|.+--+.
T Consensus 32 ~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 32 RVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred EEEEECCCCCCHHHHHHHHcCcC
Confidence 68999999999999999986443
No 384
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.04 E-value=0.034 Score=49.37 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.2
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-+++|+|+.+|||||++|++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 378999999999999999986
No 385
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.03 E-value=0.091 Score=47.64 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=24.3
Q ss_pred HHHHHhHHhhhcceeEEEeccCCCchhHHHhhhH
Q psy14891 23 KQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 23 ~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr 56 (359)
..|..-.....+..-+.|.|++|||||||++.+.
T Consensus 21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~ 54 (229)
T PRK09270 21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLE 54 (229)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3343333333456778899999999999998775
No 386
>PRK14526 adenylate kinase; Provisional
Probab=94.03 E-value=0.035 Score=49.87 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=18.7
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
++|+|+|++||||||+.+.+.
T Consensus 1 m~i~l~G~pGsGKsT~a~~La 21 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILS 21 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999998874
No 387
>PRK00625 shikimate kinase; Provisional
Probab=94.02 E-value=0.036 Score=48.18 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=18.3
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
+|+|+|.+||||||+.|++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La 21 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999973
No 388
>PLN02200 adenylate kinase family protein
Probab=93.98 E-value=0.037 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.9
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
....|+++|++||||||+.+.+.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La 64 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIV 64 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999998874
No 389
>PF13173 AAA_14: AAA domain
Probab=93.91 E-value=0.039 Score=45.19 Aligned_cols=19 Identities=47% Similarity=0.728 Sum_probs=17.2
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
++|.|+-++||||+++|+-
T Consensus 5 ~~l~G~R~vGKTtll~~~~ 23 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLA 23 (128)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6888999999999999983
No 390
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.90 E-value=0.073 Score=43.15 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.2
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
..-+++.|++|+||||+++.+-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~ 40 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999998874
No 391
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.88 E-value=0.22 Score=49.42 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=38.0
Q ss_pred CceeeEEecCCccccccchhhh------ccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEE
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYC------FDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFIL 269 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~------f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL 269 (359)
+..+.|.||+|.-.....+..- ..+.+.+++|+|.+- -..-.+..+.|.+.+ .+--+
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~----------Gq~a~~~a~~F~~~~-------~~~g~ 244 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI----------GQAAEAQAKAFKDSV-------DVGSV 244 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecccc----------ChhHHHHHHHHHhcc-------CCcEE
Confidence 4678899999965443323221 124678999999764 222233334444322 13457
Q ss_pred EeeCCCcc
Q psy14891 270 FLNKFDLF 277 (359)
Q Consensus 270 ~~NK~Dl~ 277 (359)
++||.|..
T Consensus 245 IlTKlD~~ 252 (429)
T TIGR01425 245 IITKLDGH 252 (429)
T ss_pred EEECccCC
Confidence 78999964
No 392
>PRK06762 hypothetical protein; Provisional
Probab=93.87 E-value=0.04 Score=47.07 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.1
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
-|++.|.+||||||+.+.+.-
T Consensus 4 li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999999853
No 393
>PRK06547 hypothetical protein; Provisional
Probab=93.82 E-value=0.065 Score=46.50 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=19.8
Q ss_pred hcceeEEEeccCCCchhHHHhhhH
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqmr 56 (359)
.+...|++.|++||||||+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~ 36 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALA 36 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456677888999999999998873
No 394
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.81 E-value=0.037 Score=53.35 Aligned_cols=19 Identities=37% Similarity=0.698 Sum_probs=16.3
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
+-|||++||||||+++.+-
T Consensus 34 ~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5599999999999987664
No 395
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=93.80 E-value=0.28 Score=46.44 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=75.0
Q ss_pred eeeEEecCCccccccchhhhccCC---cEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 198 IVNMVDVGGQRSQRRKWIYCFDDV---KAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 198 ~l~i~D~~Gq~~~r~~w~~~f~~~---~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.+.+.|..|++-. -...+.++ |++++|++.++ .+. +-...|.+..++-+ .-..++++-||+
T Consensus 87 ~VSfVDaPGHe~L---MATMLsGAAlMDgAlLvIaANE---pcP----QPQT~EHl~AleIi------gik~iiIvQNKI 150 (415)
T COG5257 87 RVSFVDAPGHETL---MATMLSGAALMDGALLVIAANE---PCP----QPQTREHLMALEII------GIKNIIIVQNKI 150 (415)
T ss_pred EEEEeeCCchHHH---HHHHhcchhhhcceEEEEecCC---CCC----CCchHHHHHHHhhh------ccceEEEEeccc
Confidence 5678999999854 33445554 88999999876 111 22333444333332 123589999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
||..+.- .. .++++..+|++-.-- .+.....+||.-+.||..+++++.+.|-
T Consensus 151 DlV~~E~--Al--------------E~y~qIk~FvkGt~A-------e~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 151 DLVSRER--AL--------------ENYEQIKEFVKGTVA-------ENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred ceecHHH--HH--------------HHHHHHHHHhccccc-------CCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 9975432 11 567888888775221 2334567999999999999999998773
No 396
>PRK14527 adenylate kinase; Provisional
Probab=93.77 E-value=0.04 Score=48.40 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=18.6
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.-++++|++||||||+.+++.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La 27 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLA 27 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999874
No 397
>PRK14529 adenylate kinase; Provisional
Probab=93.72 E-value=0.049 Score=49.34 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.3
Q ss_pred eeEEEeccCCCchhHHHhhhHh
Q psy14891 36 IKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~ 57 (359)
++|+|+|++||||||+.+.+.-
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999988743
No 398
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.70 E-value=0.083 Score=49.78 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=20.9
Q ss_pred hcceeEEEeccCCCchhHHHhhhHhh
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqmr~l 58 (359)
+...=|-+.|+.||||||+++.+.-+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34566789999999999999887543
No 399
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.70 E-value=0.042 Score=50.12 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=16.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
=|-|+|++||||||+++-+-
T Consensus 31 fvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37799999999999976653
No 400
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.69 E-value=0.04 Score=49.80 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.7
Q ss_pred EEEeccCCCchhHHHhhhHhh
Q psy14891 38 ILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l 58 (359)
|-|.|++||||||+++.+.-+
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 468899999999999988543
No 401
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.67 E-value=0.086 Score=46.16 Aligned_cols=35 Identities=29% Similarity=0.224 Sum_probs=24.9
Q ss_pred cHHHHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhh
Q psy14891 18 SDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 18 s~~Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqm 55 (359)
|.++...|+..-+ ..-.+++.|+.||||||+++.+
T Consensus 11 ~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTll~aL 45 (186)
T cd01130 11 SPLQAAYLWLAVE---ARKNILISGGTGSGKTTLLNAL 45 (186)
T ss_pred CHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHHHHH
Confidence 4455555554322 2347899999999999999876
No 402
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.63 E-value=0.046 Score=48.77 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-|-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIY 48 (214)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988774
No 403
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.62 E-value=0.044 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=19.6
Q ss_pred eEEEeccCCCchhHHHhhhHhhc
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~ 59 (359)
-|.|+|++||||||++|-+--+.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 58899999999999999886443
No 404
>PLN02674 adenylate kinase
Probab=93.58 E-value=0.076 Score=48.76 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.3
Q ss_pred hcceeEEEeccCCCchhHHHhhhHh
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqmr~ 57 (359)
....+|+|+|++||||+|+.+.+.-
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~ 53 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKD 53 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999988743
No 405
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.57 E-value=0.05 Score=48.59 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=19.4
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+..-++|.|++||||||+++++.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 44567889999999999998874
No 406
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=93.54 E-value=0.05 Score=51.10 Aligned_cols=21 Identities=24% Similarity=0.581 Sum_probs=19.2
Q ss_pred ceeEEEeccCCCchhHHHhhh
Q psy14891 35 VIKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqm 55 (359)
.++||++|..|+|||||++.+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL 24 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTL 24 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHH
Confidence 478999999999999999886
No 407
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.53 E-value=0.049 Score=48.35 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988763
No 408
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.52 E-value=0.048 Score=49.47 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 68899999999999988773
No 409
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.52 E-value=0.047 Score=47.97 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
=|+|.|++||||||+.+.+.
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~ 25 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37888999999999999974
No 410
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.50 E-value=0.05 Score=52.17 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.5
Q ss_pred eeEEEeccCCCchhHHHhhhHhhcCCCC
Q psy14891 36 IKILLLGAGESGKSTLVKQMKIIHNDGF 63 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~l~~~g~ 63 (359)
-+|+|+|++||||||+++.+--.++..+
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 3899999999999999999976655543
No 411
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.50 E-value=0.051 Score=47.07 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.8
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.+|+|+|..||||||+.+.+-
T Consensus 5 ~~I~liG~~GaGKStl~~~La 25 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLA 25 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHH
Confidence 479999999999999998874
No 412
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.50 E-value=0.045 Score=51.55 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
-|++.|.+||||||+.+++.-
T Consensus 4 liil~G~pGSGKSTla~~L~~ 24 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAA 24 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 367779999999999999743
No 413
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.48 E-value=0.05 Score=48.72 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-|-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHh
Confidence 68999999999999988773
No 414
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.47 E-value=0.056 Score=49.40 Aligned_cols=23 Identities=35% Similarity=0.732 Sum_probs=19.7
Q ss_pred hcceeEEEeccCCCchhHHHhhh
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqm 55 (359)
....+++++|.+||||||+++-+
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~l 33 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSL 33 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 34679999999999999998665
No 415
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.47 E-value=0.048 Score=47.57 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~ 46 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILA 46 (177)
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 68899999999999988763
No 416
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.47 E-value=0.053 Score=44.81 Aligned_cols=19 Identities=37% Similarity=0.765 Sum_probs=17.7
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
|||.|++|+|||++++++-
T Consensus 2 vlL~G~~G~GKt~l~~~la 20 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELA 20 (139)
T ss_dssp EEEEESSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999999874
No 417
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.47 E-value=0.048 Score=48.58 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=18.3
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-|-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred cEEEECCCCCCHHHHHHHHh
Confidence 78999999999999988874
No 418
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.46 E-value=0.052 Score=46.34 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.2
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...|+|.|.+||||||+.+.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La 25 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLA 25 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 3478999999999999998874
No 419
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.45 E-value=0.048 Score=50.31 Aligned_cols=19 Identities=47% Similarity=0.597 Sum_probs=17.0
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
+-|+|+.||||||++|-|-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~ 49 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLA 49 (258)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999999884
No 420
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.43 E-value=0.063 Score=45.81 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.2
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
..+||.+-|.+||||||+++-+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHH
Confidence 46899999999999999987764
No 421
>PF13479 AAA_24: AAA domain
Probab=93.39 E-value=0.051 Score=48.77 Aligned_cols=22 Identities=45% Similarity=0.667 Sum_probs=20.6
Q ss_pred cceeEEEeccCCCchhHHHhhh
Q psy14891 34 HVIKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqm 55 (359)
+.+|+||.|.+|+||||+++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 4689999999999999999998
No 422
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.39 E-value=0.052 Score=48.53 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLIL 50 (216)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988774
No 423
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=93.36 E-value=0.058 Score=48.43 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=19.7
Q ss_pred EEEeccCCCchhHHHhhhHhhcC
Q psy14891 38 ILLLGAGESGKSTLVKQMKIIHN 60 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l~~ 60 (359)
+.++|+.||||||+++.+..+.+
T Consensus 28 ~~ivGpNGaGKSTll~~i~~~~G 50 (212)
T cd03274 28 SAIVGPNGSGKSNVIDSMLFVFG 50 (212)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57999999999999999876543
No 424
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.33 E-value=0.054 Score=48.30 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-|-
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988764
No 425
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.33 E-value=0.055 Score=47.96 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=18.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.++|.|+.+|||||++|++-
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999975
No 426
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.32 E-value=0.052 Score=48.68 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~ 34 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLC 34 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999998874
No 427
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.32 E-value=0.054 Score=47.16 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++++|.+||||||+++.+-
T Consensus 5 ~i~l~G~sGsGKSTl~~~la 24 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIA 24 (176)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998874
No 428
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.31 E-value=0.056 Score=46.99 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.1
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.+.|+|+.||||||+++-+-
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999987764
No 429
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.31 E-value=0.057 Score=46.85 Aligned_cols=20 Identities=55% Similarity=0.748 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|.+-
T Consensus 30 ~~~i~G~nGsGKStLl~~l~ 49 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLT 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999998874
No 430
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.30 E-value=0.055 Score=48.18 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988774
No 431
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.29 E-value=0.054 Score=49.75 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=17.5
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
|++.|.+||||||+.+++.
T Consensus 2 Ivl~G~pGSGKST~a~~La 20 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELA 20 (249)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999985
No 432
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.29 E-value=0.055 Score=45.28 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=18.1
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.|+|.|.+||||||+.|.+.
T Consensus 1 ~i~l~G~~GsGKstla~~la 20 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLA 20 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHH
Confidence 37899999999999999985
No 433
>PRK08356 hypothetical protein; Provisional
Probab=93.27 E-value=0.057 Score=47.65 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.7
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.-|+|.|++||||||+.+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 458899999999999999985
No 434
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.26 E-value=0.056 Score=45.60 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=17.2
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
|++.|.+||||||+.+.+.
T Consensus 2 i~i~G~~GsGKSTla~~L~ 20 (149)
T cd02027 2 IWLTGLSGSGKSTIARALE 20 (149)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6788999999999999884
No 435
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.25 E-value=0.057 Score=48.06 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988774
No 436
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.25 E-value=0.057 Score=48.48 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988764
No 437
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.24 E-value=0.057 Score=48.16 Aligned_cols=20 Identities=35% Similarity=0.595 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988763
No 438
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.24 E-value=0.055 Score=45.21 Aligned_cols=18 Identities=50% Similarity=0.746 Sum_probs=16.8
Q ss_pred EEEeccCCCchhHHHhhh
Q psy14891 38 ILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 38 vLllG~~~sGKST~~kqm 55 (359)
+++.|++|+||||+++++
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 689999999999999887
No 439
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.22 E-value=0.056 Score=47.33 Aligned_cols=20 Identities=45% Similarity=0.677 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~ 39 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988764
No 440
>PLN02459 probable adenylate kinase
Probab=93.20 E-value=0.06 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.1
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+.++++|+|++||||||+.+.+.
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la 50 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLS 50 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999998874
No 441
>PRK04182 cytidylate kinase; Provisional
Probab=93.19 E-value=0.06 Score=46.30 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.|+|.|..||||||+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la 21 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLA 21 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999984
No 442
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.18 E-value=0.059 Score=47.32 Aligned_cols=19 Identities=42% Similarity=0.662 Sum_probs=16.5
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
+.|.|++|+|||||+|-+-
T Consensus 31 ~fl~GpSGAGKSTllkLi~ 49 (223)
T COG2884 31 VFLTGPSGAGKSTLLKLIY 49 (223)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999987653
No 443
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.18 E-value=0.069 Score=45.66 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=21.6
Q ss_pred eEEEeccCCCchhHHHhhhHhhcC
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIHN 60 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~~ 60 (359)
.++|||++|+||||+++-+.++..
T Consensus 30 tlvllgpsgagkssllr~lnlle~ 53 (242)
T COG4161 30 TLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EEEEECCCCCchHHHHHHHHHHhC
Confidence 789999999999999999887754
No 444
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.16 E-value=0.059 Score=48.24 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=18.5
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
.+.|+|+.||||||++|-|-=
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhC
Confidence 688999999999999988743
No 445
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.16 E-value=0.06 Score=48.31 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~ 52 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLG 52 (221)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988763
No 446
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.16 E-value=0.057 Score=48.11 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999987764
No 447
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.14 E-value=0.06 Score=48.58 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=18.2
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-|-
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~ 54 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAIS 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999998874
No 448
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.14 E-value=0.056 Score=50.75 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+-|||++||||||+++-|-
T Consensus 30 ~vaLlGpSGaGKsTlLRiIA 49 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIA 49 (345)
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57899999999999987764
No 449
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.12 E-value=0.061 Score=48.15 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.3
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.+.|+|+.||||||++|-+-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~ 52 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999988774
No 450
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.12 E-value=0.063 Score=46.84 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=17.6
Q ss_pred EEEeccCCCchhHHHhhhHh
Q psy14891 38 ILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~ 57 (359)
|.+.|++||||||+.+++.-
T Consensus 2 i~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57889999999999999853
No 451
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.11 E-value=0.061 Score=48.60 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.3
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.+.|+|+.||||||++|-|-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999988764
No 452
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.10 E-value=0.061 Score=49.00 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~ 49 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCIN 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988764
No 453
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.08 E-value=0.064 Score=47.20 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 67899999999999988764
No 454
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.07 E-value=0.064 Score=47.47 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=18.3
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.+.|+|+.||||||+++-+-
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999988764
No 455
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.06 E-value=0.063 Score=47.52 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~ 45 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIG 45 (206)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988774
No 456
>KOG3347|consensus
Probab=93.06 E-value=0.064 Score=45.15 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=20.9
Q ss_pred hcceeEEEeccCCCchhHHHhhhH
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...+||+-|++|.||||+..|+.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~la 28 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLA 28 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHH
Confidence 345699999999999999999974
No 457
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.06 E-value=0.066 Score=45.84 Aligned_cols=19 Identities=47% Similarity=0.604 Sum_probs=17.3
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
.+.|+|+.||||||+++-+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i 46 (163)
T cd03216 28 VHALLGENGAGKSTLMKIL 46 (163)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999998876
No 458
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.06 E-value=0.066 Score=46.00 Aligned_cols=20 Identities=30% Similarity=0.692 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||+++-+-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988763
No 459
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.04 E-value=0.064 Score=47.86 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=17.4
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
.+.|+|+.||||||++|-+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l 45 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAI 45 (213)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999998876
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.03 E-value=0.062 Score=47.65 Aligned_cols=18 Identities=44% Similarity=0.621 Sum_probs=16.2
Q ss_pred EEEeccCCCchhHHHhhh
Q psy14891 38 ILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 38 vLllG~~~sGKST~~kqm 55 (359)
+++.|+.||||||+++.+
T Consensus 4 ilI~GptGSGKTTll~~l 21 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAM 21 (198)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999999864
No 461
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.03 E-value=0.061 Score=48.19 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988774
No 462
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.03 E-value=0.064 Score=48.51 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-|-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIV 47 (232)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988874
No 463
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.01 E-value=0.061 Score=48.68 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.0
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-|-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988774
No 464
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.00 E-value=0.065 Score=48.64 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988774
No 465
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.99 E-value=0.065 Score=48.04 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||+++-+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68899999999999988764
No 466
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=92.98 E-value=0.065 Score=48.77 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999988763
No 467
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.98 E-value=0.069 Score=46.17 Aligned_cols=19 Identities=37% Similarity=0.658 Sum_probs=16.0
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
||+|-|..|+||||+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~ 19 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKV 19 (168)
T ss_dssp EEEEES-TTSSHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHH
Confidence 6899999999999998664
No 468
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.97 E-value=0.064 Score=47.75 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-|-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~ 48 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988764
No 469
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.96 E-value=0.069 Score=46.12 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=17.3
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
.+.|+|+.||||||++|-+
T Consensus 28 ~~~i~G~nGsGKStLl~~l 46 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKII 46 (173)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999998876
No 470
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.96 E-value=0.065 Score=46.48 Aligned_cols=20 Identities=45% Similarity=0.654 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988763
No 471
>PRK13947 shikimate kinase; Provisional
Probab=92.94 E-value=0.068 Score=45.77 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=18.1
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
+|+|+|.+||||||+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La 22 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVA 22 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999998873
No 472
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=92.93 E-value=0.071 Score=51.79 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=28.8
Q ss_pred EEEeccCCCchhHHHhhhHhhcC----------CCCChhHhhhhhhhh
Q psy14891 38 ILLLGAGESGKSTLVKQMKIIHN----------DGFTREELESFKPTV 75 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l~~----------~g~~~~E~~~~~~~I 75 (359)
|.|+|..||||||++|-+-=+|. ++.+.+.+..||..+
T Consensus 352 vFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~Lf 399 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF 399 (546)
T ss_pred EEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHH
Confidence 78899999999999987764443 346667777787654
No 473
>COG0218 Predicted GTPase [General function prediction only]
Probab=92.91 E-value=2 Score=37.98 Aligned_cols=127 Identities=13% Similarity=0.269 Sum_probs=68.2
Q ss_pred cccceeE--EEEeeCCceeeEEecCCc------cccccchh----hhcc---CCcEEEEEEECCCCccccccCCcccchH
Q psy14891 183 RTNGIIE--TNFRLGESIVNMVDVGGQ------RSQRRKWI----YCFD---DVKAVLYVVALSGYDMTLLEDSSVNRLD 247 (359)
Q Consensus 183 ~T~G~~~--~~~~~~~~~l~i~D~~Gq------~~~r~~w~----~~f~---~~~~iifv~dls~yd~~l~ed~~~~~l~ 247 (359)
.|.|.+. ..|.+.+ .+.+.|++|- ...+..|. +|++ +-.+++.++|.-.. ....+
T Consensus 55 ktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~---------~~~~D 124 (200)
T COG0218 55 KTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP---------PKDLD 124 (200)
T ss_pred CCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC---------CcHHH
Confidence 4556322 2344433 2889999984 23455564 5654 35678888887651 11111
Q ss_pred HHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEE
Q psy14891 248 ESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPH 327 (359)
Q Consensus 248 es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~ 327 (359)
.+.++-+ .. .+.|+++++||+|-... .........+++.+. ..........
T Consensus 125 --~em~~~l-~~---~~i~~~vv~tK~DKi~~--------------------~~~~k~l~~v~~~l~---~~~~~~~~~~ 175 (200)
T COG0218 125 --REMIEFL-LE---LGIPVIVVLTKADKLKK--------------------SERNKQLNKVAEELK---KPPPDDQWVV 175 (200)
T ss_pred --HHHHHHH-HH---cCCCeEEEEEccccCCh--------------------hHHHHHHHHHHHHhc---CCCCccceEE
Confidence 1222222 21 37899999999995431 112223334443221 1111222266
Q ss_pred EeeccCCchHHHHHHHHHHHH
Q psy14891 328 FTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 328 ~tsA~d~~ni~~vf~~v~~~I 348 (359)
.+|+..+.+++++-..+...+
T Consensus 176 ~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 176 LFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EEecccccCHHHHHHHHHHHh
Confidence 788888888888777766544
No 474
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.90 E-value=0.066 Score=48.07 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988764
No 475
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.90 E-value=0.066 Score=49.25 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=17.1
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
-+.|+|+.||||||++|-+
T Consensus 32 ~~~iiGPNGaGKSTLlK~i 50 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAI 50 (254)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999999886
No 476
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=92.89 E-value=0.068 Score=49.31 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.6
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.+.|+|+.||||||++|-+-
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~ 53 (258)
T PRK11701 33 EVLGIVGESGSGKTTLLNALS 53 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999988874
No 477
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.87 E-value=0.17 Score=42.02 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.2
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
--|+|.|..|+|||||+|.+-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~ 43 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLL 43 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 357899999999999999874
No 478
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.87 E-value=0.069 Score=48.41 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~ 56 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLG 56 (233)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988774
No 479
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.86 E-value=0.069 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=15.2
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
.--++|.|.+|+||||+++.+.
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~ 45 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALL 45 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3457888999999999999764
No 480
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.85 E-value=0.067 Score=48.44 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~ 33 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAIL 33 (230)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999988774
No 481
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.84 E-value=0.067 Score=48.61 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.1
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-|-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~ 48 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLN 48 (241)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999998874
No 482
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.80 E-value=0.072 Score=47.95 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=18.3
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.+.|+|+.||||||++|-+-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~ 52 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAIL 52 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999988764
No 483
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.78 E-value=0.076 Score=46.78 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=18.1
Q ss_pred EEEeccCCCchhHHHhhhHhhc
Q psy14891 38 ILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l~ 59 (359)
|-+-|+++||||||.+++.-+.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4577999999999999986443
No 484
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=92.77 E-value=0.15 Score=50.37 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=21.1
Q ss_pred cceeEEEeccCCCchhHHHhhhHhhc
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr~l~ 59 (359)
+.+=|-|.|+.||||||+++.+.-+.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45667789999999999999986443
No 485
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=92.77 E-value=0.069 Score=48.64 Aligned_cols=24 Identities=21% Similarity=0.463 Sum_probs=20.3
Q ss_pred eEEEeccCCCchhHHHhhhHhhcC
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIHN 60 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~~ 60 (359)
-.+|+|+.||||||+++.+-.+.+
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999865543
No 486
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.76 E-value=0.075 Score=44.55 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=17.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||+++-+-
T Consensus 28 ~~~i~G~nGsGKStLl~~l~ 47 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIA 47 (144)
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57899999999999988763
No 487
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.76 E-value=0.075 Score=46.27 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~ 47 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALF 47 (182)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999987763
No 488
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.75 E-value=0.075 Score=45.94 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=18.5
Q ss_pred eeEEEeccCCCchhHHHhhh
Q psy14891 36 IKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqm 55 (359)
.+|+|+|..|||||||-|++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~L 22 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRAL 22 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHH
Confidence 47999999999999999987
No 489
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=92.73 E-value=0.076 Score=46.85 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.2
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.+.|+|+.||||||++|-+-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~ 47 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILA 47 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 368899999999999988763
No 490
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.72 E-value=0.072 Score=47.58 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.5
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.+.|+|+.||||||++|-+-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~ 44 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIA 44 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHh
Confidence 468999999999999998874
No 491
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.71 E-value=0.076 Score=45.97 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=18.1
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+|++|+++|||||+..++-
T Consensus 3 ~ili~G~~~sGKS~~a~~l~ 22 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLA 22 (170)
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 68999999999999998874
No 492
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.70 E-value=0.076 Score=47.91 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=18.0
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLM 50 (229)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999998874
No 493
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.69 E-value=0.086 Score=47.37 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.7
Q ss_pred eeEEEeccCCCchhHHHhhhHh
Q psy14891 36 IKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~ 57 (359)
-+++|.|+.+|||||++|++-+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4689999999999999999864
No 494
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=92.68 E-value=0.075 Score=48.77 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=18.1
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLN 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998874
No 495
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.68 E-value=0.074 Score=47.54 Aligned_cols=18 Identities=44% Similarity=0.780 Sum_probs=16.5
Q ss_pred EEEeccCCCchhHHHhhh
Q psy14891 38 ILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 38 vLllG~~~sGKST~~kqm 55 (359)
+-+||+.|+||||++|++
T Consensus 30 ~ailGPNGAGKSTlLk~L 47 (259)
T COG4559 30 LAILGPNGAGKSTLLKAL 47 (259)
T ss_pred EEEECCCCccHHHHHHHh
Confidence 578999999999999987
No 496
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.66 E-value=0.089 Score=45.96 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
=++|+|++||||+|+.++|.
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~ 23 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELI 23 (184)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999984
No 497
>PRK01184 hypothetical protein; Provisional
Probab=92.66 E-value=0.083 Score=45.94 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=15.8
Q ss_pred eEEEeccCCCchhHHHhh
Q psy14891 37 KILLLGAGESGKSTLVKQ 54 (359)
Q Consensus 37 kvLllG~~~sGKST~~kq 54 (359)
.|+|+|++||||||+.+.
T Consensus 3 ~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998763
No 498
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.66 E-value=0.076 Score=45.82 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||+++-+-
T Consensus 30 ~~~i~G~nGsGKStLl~~l~ 49 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLIL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999988764
No 499
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.64 E-value=0.13 Score=44.01 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.4
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.++|+|++|+|||||++.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~ 56 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALL 56 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 367999999999999998873
No 500
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.64 E-value=0.085 Score=46.19 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=18.1
Q ss_pred EEEeccCCCchhHHHhhhHh
Q psy14891 38 ILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~ 57 (359)
++|.|+.+|||||++|++-+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 58999999999999999864
Done!