Query psy14891
Match_columns 359
No_of_seqs 310 out of 2331
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 23:28:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ohm_A Guanine nucleotide-bind 100.0 2.7E-89 9.3E-94 649.3 30.0 325 31-359 3-327 (327)
2 1cip_A Protein (guanine nucleo 100.0 2.3E-89 7.8E-94 658.5 28.5 352 2-359 1-353 (353)
3 1azs_C GS-alpha; complex (lyas 100.0 1.3E-88 4.5E-93 660.2 28.6 357 1-359 1-394 (402)
4 1zcb_A G alpha I/13; GTP-bindi 100.0 5.2E-88 1.8E-92 651.1 27.8 353 1-359 1-361 (362)
5 4fid_A G protein alpha subunit 100.0 4.9E-86 1.7E-90 629.1 25.8 317 33-359 3-336 (340)
6 2xtz_A Guanine nucleotide-bind 100.0 7.6E-77 2.6E-81 571.3 25.7 323 33-359 7-354 (354)
7 4dkx_A RAS-related protein RAB 99.9 1.3E-25 4.4E-30 201.5 16.1 115 197-350 62-176 (216)
8 1upt_A ARL1, ADP-ribosylation 99.9 1.7E-21 5.8E-26 165.9 18.8 133 183-350 37-169 (171)
9 1fzq_A ADP-ribosylation factor 99.9 1.5E-21 5.1E-26 169.3 17.1 133 183-350 46-178 (181)
10 1r8s_A ADP-ribosylation factor 99.9 1.3E-21 4.5E-26 165.6 15.9 133 183-350 30-162 (164)
11 2hup_A RAS-related protein RAB 99.9 2.7E-21 9.1E-26 170.6 17.3 124 190-352 69-195 (201)
12 2x77_A ADP-ribosylation factor 99.9 3.2E-21 1.1E-25 167.7 17.5 135 183-352 52-186 (189)
13 1f6b_A SAR1; gtpases, N-termin 99.9 1.9E-21 6.6E-26 171.2 15.4 134 184-347 56-196 (198)
14 2o52_A RAS-related protein RAB 99.9 3.2E-21 1.1E-25 169.9 16.5 123 191-352 66-190 (200)
15 4bas_A ADP-ribosylation factor 99.9 9.9E-21 3.4E-25 165.4 19.3 136 183-352 49-191 (199)
16 2bme_A RAB4A, RAS-related prot 99.9 6.3E-21 2.2E-25 164.9 17.8 123 190-351 50-174 (186)
17 3t1o_A Gliding protein MGLA; G 99.9 1.4E-21 4.8E-26 170.2 13.6 122 196-353 73-195 (198)
18 2fu5_C RAS-related protein RAB 99.9 2E-21 7E-26 167.7 14.5 126 190-354 48-175 (183)
19 2b6h_A ADP-ribosylation factor 99.9 2.8E-21 9.4E-26 169.3 15.5 132 183-349 59-190 (192)
20 1zj6_A ADP-ribosylation factor 99.9 8.2E-21 2.8E-25 165.0 18.0 132 183-349 46-177 (187)
21 2hxs_A RAB-26, RAS-related pro 99.9 1.9E-21 6.4E-26 166.9 13.8 128 188-353 44-176 (178)
22 1moz_A ARL1, ADP-ribosylation 99.9 7.6E-21 2.6E-25 164.0 17.5 135 183-352 48-182 (183)
23 1ksh_A ARF-like protein 2; sma 99.9 1.1E-20 3.7E-25 163.7 18.5 134 183-351 48-181 (186)
24 1z2a_A RAS-related protein RAB 99.9 5.2E-21 1.8E-25 162.2 16.0 114 197-350 54-167 (168)
25 1m2o_B GTP-binding protein SAR 99.9 5.9E-21 2E-25 166.9 16.7 134 183-346 53-188 (190)
26 1c1y_A RAS-related protein RAP 99.9 4.7E-21 1.6E-25 162.3 15.5 117 196-349 50-166 (167)
27 2a5j_A RAS-related protein RAB 99.9 1.1E-20 3.9E-25 164.8 18.2 124 191-353 62-187 (191)
28 3t5g_A GTP-binding protein RHE 99.9 1.2E-20 4E-25 162.7 17.8 118 197-352 54-171 (181)
29 3tw8_B RAS-related protein RAB 99.9 2.3E-20 8E-25 160.1 19.2 129 187-355 46-176 (181)
30 3oes_A GTPase rhebl1; small GT 99.9 8E-21 2.7E-25 167.2 16.6 120 195-352 70-189 (201)
31 1ky3_A GTP-binding protein YPT 99.9 1.3E-20 4.6E-25 161.7 17.5 120 197-353 58-181 (182)
32 2h57_A ADP-ribosylation factor 99.9 1.1E-20 3.8E-25 164.6 17.1 131 183-348 53-185 (190)
33 3q72_A GTP-binding protein RAD 99.9 1.6E-20 5.4E-25 159.2 17.7 117 197-351 49-165 (166)
34 2bov_A RAla, RAS-related prote 99.9 1.5E-20 5.2E-25 165.1 17.9 118 197-352 62-179 (206)
35 3bc1_A RAS-related protein RAB 99.9 1.2E-20 4.2E-25 163.6 17.0 119 197-353 70-188 (195)
36 2a9k_A RAS-related protein RAL 99.9 1.2E-20 3.9E-25 162.9 16.7 119 197-353 66-184 (187)
37 2oil_A CATX-8, RAS-related pro 99.9 1.5E-20 5.1E-25 164.0 17.4 118 196-352 73-190 (193)
38 2h17_A ADP-ribosylation factor 99.9 9.6E-21 3.3E-25 163.8 16.1 130 183-347 51-180 (181)
39 1u8z_A RAS-related protein RAL 99.9 8.4E-21 2.9E-25 160.5 15.2 116 197-350 52-167 (168)
40 2g6b_A RAS-related protein RAB 99.9 1.1E-20 3.7E-25 162.4 15.9 118 197-353 60-177 (180)
41 1x3s_A RAS-related protein RAB 99.9 1.2E-20 4E-25 164.3 16.0 117 196-351 63-179 (195)
42 1z0f_A RAB14, member RAS oncog 99.9 1.2E-20 4.2E-25 161.6 15.8 115 197-350 64-178 (179)
43 2ew1_A RAS-related protein RAB 99.9 1.7E-20 5.7E-25 165.9 17.0 123 190-351 66-190 (201)
44 3cbq_A GTP-binding protein REM 99.9 1.4E-20 4.7E-25 165.4 16.3 117 197-351 72-189 (195)
45 1zd9_A ADP-ribosylation factor 99.9 9.6E-21 3.3E-25 164.9 15.2 132 183-349 53-184 (188)
46 3tkl_A RAS-related protein RAB 99.8 3.6E-20 1.2E-24 161.5 18.5 126 188-352 54-181 (196)
47 3kkq_A RAS-related protein M-R 99.8 2E-20 6.7E-25 161.5 16.6 116 197-350 66-182 (183)
48 3q3j_B RHO-related GTP-binding 99.8 1.2E-20 4E-25 168.3 15.5 128 196-351 74-204 (214)
49 1z08_A RAS-related protein RAB 99.8 1.9E-20 6.5E-25 159.2 15.9 114 197-349 55-168 (170)
50 2fn4_A P23, RAS-related protei 99.8 3.7E-20 1.2E-24 158.9 17.5 118 197-352 57-174 (181)
51 2bcg_Y Protein YP2, GTP-bindin 99.8 6.4E-20 2.2E-24 161.8 19.4 123 190-351 48-172 (206)
52 3dz8_A RAS-related protein RAB 99.8 7.7E-21 2.6E-25 165.8 13.1 118 195-351 70-187 (191)
53 3ihw_A Centg3; RAS, centaurin, 99.8 3.4E-20 1.2E-24 161.3 17.0 123 190-352 58-182 (184)
54 2f7s_A C25KG, RAS-related prot 99.8 1.2E-20 4.1E-25 167.8 14.5 118 196-351 83-200 (217)
55 2gf9_A RAS-related protein RAB 99.8 7.8E-20 2.7E-24 159.0 19.0 117 196-351 70-186 (189)
56 1r2q_A RAS-related protein RAB 99.8 2.5E-20 8.6E-25 158.1 15.5 114 196-348 54-167 (170)
57 1kao_A RAP2A; GTP-binding prot 99.8 3E-20 1E-24 157.0 15.7 116 197-350 51-166 (167)
58 2efe_B Small GTP-binding prote 99.8 2.3E-20 8E-25 160.4 15.2 116 196-350 60-175 (181)
59 1z0j_A RAB-22, RAS-related pro 99.8 3.9E-20 1.3E-24 157.0 16.4 114 197-349 55-168 (170)
60 3r7w_B Gtpase2, GTP-binding pr 99.8 1.3E-21 4.4E-26 184.5 7.9 137 183-350 33-174 (331)
61 3c5c_A RAS-like protein 12; GD 99.8 3E-20 1E-24 161.9 15.6 116 196-350 68-186 (187)
62 3q85_A GTP-binding protein REM 99.8 6E-20 2.1E-24 156.1 17.1 117 197-351 51-168 (169)
63 1z06_A RAS-related protein RAB 99.8 3.5E-20 1.2E-24 161.2 15.9 122 190-349 60-187 (189)
64 3reg_A RHO-like small GTPase; 99.8 4E-20 1.4E-24 161.5 16.0 119 197-352 71-190 (194)
65 2nzj_A GTP-binding protein REM 99.8 7.4E-20 2.5E-24 156.2 17.2 118 197-352 52-171 (175)
66 3cpj_B GTP-binding protein YPT 99.8 3.8E-20 1.3E-24 165.8 15.9 122 190-350 53-176 (223)
67 1wms_A RAB-9, RAB9, RAS-relate 99.8 6.5E-20 2.2E-24 157.0 16.6 124 190-351 47-175 (177)
68 2yc2_C IFT27, small RAB-relate 99.8 1.5E-20 5.2E-25 165.2 12.7 121 196-354 72-196 (208)
69 1zbd_A Rabphilin-3A; G protein 99.8 1.1E-19 3.9E-24 159.6 17.9 117 196-351 56-172 (203)
70 2fg5_A RAB-22B, RAS-related pr 99.8 3.9E-20 1.3E-24 161.6 14.8 116 196-350 71-186 (192)
71 2atv_A RERG, RAS-like estrogen 99.8 5.7E-20 2E-24 160.9 15.8 117 197-352 76-193 (196)
72 1ek0_A Protein (GTP-binding pr 99.8 3.8E-20 1.3E-24 157.0 14.2 116 197-348 52-167 (170)
73 2g3y_A GTP-binding protein GEM 99.8 1.3E-19 4.3E-24 161.8 18.1 122 192-351 80-204 (211)
74 2q3h_A RAS homolog gene family 99.8 1E-19 3.5E-24 159.6 17.2 130 197-353 68-198 (201)
75 3clv_A RAB5 protein, putative; 99.8 2E-19 6.9E-24 156.9 18.5 113 197-351 93-205 (208)
76 2il1_A RAB12; G-protein, GDP, 99.8 8.6E-20 2.9E-24 159.5 15.9 124 190-351 66-191 (192)
77 4dsu_A GTPase KRAS, isoform 2B 99.8 7.7E-20 2.6E-24 158.1 15.1 116 197-351 52-167 (189)
78 1g16_A RAS-related protein SEC 99.8 1.2E-19 4.1E-24 154.0 16.0 115 197-351 52-166 (170)
79 2y8e_A RAB-protein 6, GH09086P 99.8 8.5E-20 2.9E-24 156.3 15.1 121 190-349 54-176 (179)
80 1m7b_A RND3/RHOE small GTP-bin 99.8 1.1E-19 3.8E-24 157.5 15.8 128 196-350 54-183 (184)
81 2atx_A Small GTP binding prote 99.8 1.7E-19 5.9E-24 157.3 16.8 126 197-349 66-192 (194)
82 2j1l_A RHO-related GTP-binding 99.8 1.2E-19 4.2E-24 161.5 15.5 129 197-353 82-212 (214)
83 2iwr_A Centaurin gamma 1; ANK 99.8 3.9E-19 1.3E-23 152.6 18.1 115 197-353 54-172 (178)
84 1vg8_A RAS-related protein RAB 99.8 3.3E-19 1.1E-23 156.9 17.5 118 197-352 57-177 (207)
85 3o47_A ADP-ribosylation factor 99.8 1.1E-19 3.9E-24 172.8 15.5 133 183-350 195-327 (329)
86 1gwn_A RHO-related GTP-binding 99.8 2.3E-19 7.8E-24 159.0 16.2 128 196-350 75-204 (205)
87 2j0v_A RAC-like GTP-binding pr 99.8 1.2E-19 4E-24 160.8 13.9 124 197-351 57-181 (212)
88 3con_A GTPase NRAS; structural 99.8 4.3E-19 1.5E-23 154.1 17.0 120 197-355 69-188 (190)
89 3bwd_D RAC-like GTP-binding pr 99.8 8.3E-20 2.8E-24 157.1 11.9 124 197-349 56-180 (182)
90 1mh1_A RAC1; GTP-binding, GTPa 99.8 2.4E-19 8.3E-24 154.6 14.8 127 197-351 53-181 (186)
91 3cph_A RAS-related protein SEC 99.8 4.2E-19 1.5E-23 156.8 16.6 123 189-351 59-183 (213)
92 2gco_A H9, RHO-related GTP-bin 99.8 4.4E-19 1.5E-23 156.1 16.2 127 197-350 73-200 (201)
93 2p5s_A RAS and EF-hand domain 99.8 1.8E-19 6.3E-24 158.2 13.0 121 197-350 77-197 (199)
94 2cjw_A GTP-binding protein GEM 99.8 1.5E-18 5.2E-23 151.9 18.8 117 197-351 56-173 (192)
95 2fv8_A H6, RHO-related GTP-bin 99.8 9E-19 3.1E-23 154.8 17.0 130 197-352 73-202 (207)
96 2ce2_X GTPase HRAS; signaling 99.8 8.6E-19 2.9E-23 147.6 15.9 115 197-350 51-165 (166)
97 3lvq_E ARF-GAP with SH3 domain 99.8 6.7E-19 2.3E-23 176.4 17.1 133 183-350 352-484 (497)
98 2erx_A GTP-binding protein DI- 99.8 4.6E-19 1.6E-23 150.5 13.1 115 197-349 51-166 (172)
99 4djt_A GTP-binding nuclear pro 99.8 7.5E-19 2.6E-23 156.2 14.5 116 197-351 61-176 (218)
100 3gj0_A GTP-binding nuclear pro 99.8 1.6E-19 5.4E-24 161.2 9.8 114 196-351 63-176 (221)
101 2fh5_B SR-beta, signal recogni 99.8 1.7E-18 5.7E-23 153.5 15.7 123 196-347 53-213 (214)
102 2gf0_A GTP-binding protein DI- 99.8 3.2E-19 1.1E-23 155.8 10.3 116 197-351 56-172 (199)
103 3llu_A RAS-related GTP-binding 99.8 9.4E-19 3.2E-23 153.4 13.2 125 196-348 68-195 (196)
104 4gzl_A RAS-related C3 botulinu 99.8 1.3E-18 4.3E-23 153.7 14.1 125 197-348 78-203 (204)
105 3l0i_B RAS-related protein RAB 99.8 3.6E-20 1.2E-24 162.7 4.1 121 190-349 73-195 (199)
106 2lkc_A Translation initiation 99.8 6.2E-18 2.1E-22 144.8 16.8 127 191-354 49-175 (178)
107 2wkq_A NPH1-1, RAS-related C3 99.8 6.8E-18 2.3E-22 159.3 18.6 126 197-350 203-330 (332)
108 2zej_A Dardarin, leucine-rich 99.8 6.5E-19 2.2E-23 152.8 9.3 123 196-351 55-179 (184)
109 2f9l_A RAB11B, member RAS onco 99.8 2.9E-17 9.9E-22 144.2 18.7 123 190-351 45-169 (199)
110 3th5_A RAS-related C3 botulinu 99.6 1.5E-19 5.3E-24 159.2 0.0 125 197-349 78-204 (204)
111 1oix_A RAS-related protein RAB 99.7 1.1E-16 3.9E-21 139.8 17.5 120 190-348 69-190 (191)
112 2wji_A Ferrous iron transport 99.7 4.2E-17 1.4E-21 138.9 13.6 111 192-348 45-163 (165)
113 3r7w_A Gtpase1, GTP-binding pr 99.7 4.1E-17 1.4E-21 153.7 14.6 133 183-349 37-180 (307)
114 3c5h_A Glucocorticoid receptor 99.7 2.9E-17 9.8E-22 150.5 10.0 106 204-348 125-253 (255)
115 2qu8_A Putative nucleolar GTP- 99.7 6.4E-16 2.2E-20 138.7 17.7 126 188-351 67-206 (228)
116 2wjg_A FEOB, ferrous iron tran 99.7 2.4E-16 8.1E-21 136.3 12.0 118 188-351 45-170 (188)
117 2dyk_A GTP-binding protein; GT 99.6 1.5E-15 5.2E-20 127.4 13.1 110 190-347 42-159 (161)
118 2gj8_A MNME, tRNA modification 99.6 1.6E-15 5.4E-20 130.2 12.0 115 187-349 42-165 (172)
119 3dpu_A RAB family protein; roc 99.6 4.3E-16 1.5E-20 157.4 9.7 112 196-350 97-208 (535)
120 1svi_A GTP-binding protein YSX 99.6 4.4E-15 1.5E-19 129.1 14.5 111 198-348 70-193 (195)
121 2cxx_A Probable GTP-binding pr 99.6 9.7E-16 3.3E-20 132.4 8.6 120 198-351 45-185 (190)
122 3pqc_A Probable GTP-binding pr 99.6 5.5E-15 1.9E-19 128.0 13.3 114 196-349 67-193 (195)
123 1nrj_B SR-beta, signal recogni 99.6 4.4E-16 1.5E-20 138.2 5.3 75 195-279 53-135 (218)
124 3a1s_A Iron(II) transport prot 99.6 1E-14 3.5E-19 133.8 13.8 116 187-348 42-165 (258)
125 4dhe_A Probable GTP-binding pr 99.6 3.6E-14 1.2E-18 126.1 13.9 121 195-350 77-211 (223)
126 3b1v_A Ferrous iron uptake tra 99.6 1.7E-14 5.9E-19 133.4 12.0 107 196-348 48-162 (272)
127 3k53_A Ferrous iron transport 99.5 4.9E-14 1.7E-18 130.0 13.6 119 186-349 39-165 (271)
128 4dcu_A GTP-binding protein ENG 99.5 4.4E-14 1.5E-18 140.0 11.6 123 191-351 237-370 (456)
129 2ged_A SR-beta, signal recogni 99.5 3.8E-14 1.3E-18 123.0 9.0 75 195-279 89-171 (193)
130 3gee_A MNME, tRNA modification 99.5 2.3E-13 7.9E-18 135.2 15.7 118 188-349 272-397 (476)
131 3iby_A Ferrous iron transport 99.5 4.1E-14 1.4E-18 129.7 8.8 116 186-347 37-164 (256)
132 3i8s_A Ferrous iron transport 99.5 5.3E-14 1.8E-18 130.2 9.2 116 187-348 40-167 (274)
133 2hjg_A GTP-binding protein ENG 99.5 7.6E-14 2.6E-18 137.5 10.4 124 190-351 216-350 (436)
134 2e87_A Hypothetical protein PH 99.5 3.6E-12 1.2E-16 122.2 21.3 120 189-350 206-336 (357)
135 1u0l_A Probable GTPase ENGC; p 99.5 1.6E-13 5.4E-18 128.7 11.0 120 182-346 48-169 (301)
136 3p26_A Elongation factor 1 alp 99.4 5.1E-13 1.7E-17 133.2 13.3 131 183-339 97-227 (483)
137 3iev_A GTP-binding protein ERA 99.4 1.6E-12 5.3E-17 122.3 15.4 117 192-348 53-180 (308)
138 1xzp_A Probable tRNA modificat 99.4 1.5E-12 5.2E-17 129.4 15.0 116 187-350 281-405 (482)
139 1mky_A Probable GTP-binding pr 99.4 2.7E-12 9.4E-17 126.4 15.1 122 191-350 222-355 (439)
140 3j2k_7 ERF3, eukaryotic polype 99.4 3.5E-12 1.2E-16 125.7 15.5 136 183-342 81-217 (439)
141 1wf3_A GTP-binding protein; GT 99.4 5.3E-12 1.8E-16 118.3 15.8 111 194-347 52-170 (301)
142 3qq5_A Small GTP-binding prote 99.4 3.3E-13 1.1E-17 132.0 6.7 115 188-349 73-195 (423)
143 2qtf_A Protein HFLX, GTP-bindi 99.4 1.6E-11 5.5E-16 118.0 18.0 135 184-353 213-357 (364)
144 2elf_A Protein translation elo 99.4 5.9E-12 2E-16 121.3 14.9 127 183-349 46-179 (370)
145 3tr5_A RF-3, peptide chain rel 99.4 2.8E-11 9.5E-16 121.7 20.1 80 184-278 69-148 (528)
146 1mky_A Probable GTP-binding pr 99.4 2.5E-12 8.5E-17 126.7 12.2 115 189-350 41-166 (439)
147 3lxx_A GTPase IMAP family memb 99.4 6.4E-12 2.2E-16 113.4 13.9 82 187-279 68-160 (239)
148 3sjy_A Translation initiation 99.4 8E-12 2.7E-16 121.8 15.4 116 197-348 75-190 (403)
149 3geh_A MNME, tRNA modification 99.4 6.2E-12 2.1E-16 124.4 14.4 112 191-351 266-385 (462)
150 3izy_P Translation initiation 99.4 5.2E-13 1.8E-17 134.1 6.6 116 196-348 51-166 (537)
151 3l82_B F-box only protein 4; T 99.4 2.7E-13 9.3E-18 119.0 3.8 110 203-349 108-222 (227)
152 2xtp_A GTPase IMAP family memb 99.4 9.2E-12 3.2E-16 113.7 14.3 134 187-350 61-208 (260)
153 2hjg_A GTP-binding protein ENG 99.3 4.7E-12 1.6E-16 124.6 11.9 110 193-349 47-164 (436)
154 1zun_B Sulfate adenylate trans 99.3 8.1E-12 2.8E-16 122.9 13.1 127 183-342 90-216 (434)
155 1wb1_A Translation elongation 99.3 1.2E-11 4.2E-16 123.2 14.3 129 184-349 60-188 (482)
156 3lxw_A GTPase IMAP family memb 99.3 1.3E-11 4.4E-16 112.3 13.0 84 186-279 59-154 (247)
157 3t5d_A Septin-7; GTP-binding p 99.3 6.5E-12 2.2E-16 115.9 10.9 124 183-347 47-201 (274)
158 3cb4_D GTP-binding protein LEP 99.3 1.4E-11 4.8E-16 125.4 13.6 110 197-348 71-180 (599)
159 1s0u_A EIF-2-gamma, translatio 99.3 1.1E-11 3.9E-16 120.8 12.4 116 197-348 81-196 (408)
160 1d2e_A Elongation factor TU (E 99.3 3.2E-11 1.1E-15 117.3 15.1 129 183-348 52-193 (397)
161 2ywe_A GTP-binding protein LEP 99.3 3.6E-11 1.2E-15 122.3 16.0 111 197-349 73-183 (600)
162 2c78_A Elongation factor TU-A; 99.3 3.2E-11 1.1E-15 117.6 15.0 79 185-278 63-142 (405)
163 3izq_1 HBS1P, elongation facto 99.3 1.1E-11 3.6E-16 126.9 12.1 131 184-340 232-362 (611)
164 1r5b_A Eukaryotic peptide chai 99.3 4E-12 1.4E-16 126.2 8.5 132 182-341 106-243 (467)
165 1jny_A EF-1-alpha, elongation 99.3 3.6E-12 1.2E-16 125.4 8.0 129 183-342 70-205 (435)
166 2qag_A Septin-2, protein NEDD5 99.3 2.2E-12 7.6E-17 123.9 6.0 112 197-351 95-234 (361)
167 1kk1_A EIF2gamma; initiation o 99.3 4.9E-11 1.7E-15 116.4 15.4 116 197-348 83-198 (410)
168 1zo1_I IF2, translation initia 99.3 6.3E-12 2.1E-16 125.2 8.8 113 195-346 49-163 (501)
169 1lnz_A SPO0B-associated GTP-bi 99.3 2.7E-11 9.1E-16 115.4 12.1 122 192-350 200-330 (342)
170 3l2o_B F-box only protein 4; s 99.3 3.6E-12 1.2E-16 117.1 5.6 110 203-349 193-307 (312)
171 3def_A T7I23.11 protein; chlor 99.3 8.9E-11 3.1E-15 107.5 14.8 82 187-278 74-165 (262)
172 1g7s_A Translation initiation 99.2 5.5E-11 1.9E-15 121.1 14.4 135 197-349 70-217 (594)
173 1dar_A EF-G, elongation factor 99.2 9.5E-11 3.2E-15 121.6 16.3 82 183-279 63-144 (691)
174 1f60_A Elongation factor EEF1A 99.2 6.3E-11 2.2E-15 117.3 13.7 121 183-340 71-202 (458)
175 4dcu_A GTP-binding protein ENG 99.2 2.6E-11 9E-16 120.0 9.8 108 194-348 68-183 (456)
176 2dy1_A Elongation factor G; tr 99.2 2.5E-10 8.6E-15 118.0 15.4 75 188-277 65-139 (665)
177 2rdo_7 EF-G, elongation factor 99.2 3.1E-10 1E-14 117.9 16.1 68 197-279 82-149 (704)
178 1ega_A Protein (GTP-binding pr 99.2 2.2E-10 7.6E-15 107.2 12.5 109 194-346 53-171 (301)
179 3mca_A HBS1, elongation factor 99.2 1.5E-11 5.1E-16 125.4 4.7 129 183-338 241-371 (592)
180 2xex_A Elongation factor G; GT 99.1 4.4E-10 1.5E-14 116.6 15.3 81 183-278 61-141 (693)
181 2h5e_A Peptide chain release f 99.1 1.1E-09 3.6E-14 110.3 17.1 81 183-278 68-148 (529)
182 1h65_A Chloroplast outer envel 99.1 1E-09 3.5E-14 100.8 15.8 77 191-278 81-168 (270)
183 2aka_B Dynamin-1; fusion prote 99.1 1.5E-10 5.1E-15 107.4 9.0 112 196-346 124-249 (299)
184 3avx_A Elongation factor TS, e 99.1 6.5E-10 2.2E-14 119.0 14.1 122 190-348 352-484 (1289)
185 1pui_A ENGB, probable GTP-bind 99.1 1.1E-09 3.8E-14 95.9 13.3 112 198-348 73-197 (210)
186 2j69_A Bacterial dynamin-like 99.0 8.9E-09 3E-13 106.8 17.4 125 197-350 174-325 (695)
187 2qnr_A Septin-2, protein NEDD5 98.9 1.2E-09 4.2E-14 102.2 6.8 110 197-350 76-214 (301)
188 2wsm_A Hydrogenase expression/ 98.9 3.2E-08 1.1E-12 87.4 14.9 107 195-350 107-214 (221)
189 2qag_C Septin-7; cell cycle, c 98.9 4.2E-09 1.4E-13 102.7 9.1 58 264-347 167-224 (418)
190 1udx_A The GTP-binding protein 98.9 2.4E-08 8.3E-13 97.3 14.4 113 197-350 205-325 (416)
191 1n0u_A EF-2, elongation factor 98.9 1.3E-08 4.5E-13 107.7 13.4 69 196-279 97-165 (842)
192 3p32_A Probable GTPase RV1496/ 98.8 1.5E-08 5E-13 97.0 11.9 113 195-349 170-283 (355)
193 3t34_A Dynamin-related protein 98.8 4.5E-09 1.5E-13 100.6 8.2 71 196-279 135-218 (360)
194 2hf9_A Probable hydrogenase ni 98.7 6.6E-08 2.2E-12 85.6 11.0 61 264-350 164-224 (226)
195 2yv5_A YJEQ protein; hydrolase 98.7 3.4E-08 1.2E-12 92.3 9.5 98 206-345 65-164 (302)
196 1jwy_B Dynamin A GTPase domain 98.7 4.8E-08 1.6E-12 91.2 10.5 71 195-278 129-212 (315)
197 3vqt_A RF-3, peptide chain rel 98.7 7.5E-07 2.6E-11 89.9 18.9 83 181-278 84-166 (548)
198 2x2e_A Dynamin-1; nitration, h 98.6 3.5E-08 1.2E-12 94.2 6.8 112 196-346 129-254 (353)
199 1wxq_A GTP-binding protein; st 98.6 1.8E-07 6.1E-12 90.7 11.0 36 197-232 71-113 (397)
200 2www_A Methylmalonic aciduria 98.5 1.1E-06 3.8E-11 83.7 13.6 112 195-348 165-277 (349)
201 2dby_A GTP-binding protein; GD 98.5 9.8E-07 3.4E-11 84.6 12.1 36 197-232 69-111 (368)
202 3h2y_A GTPase family protein; 98.4 1.8E-07 6.3E-12 89.7 6.5 104 205-347 54-157 (368)
203 2qpt_A EH domain-containing pr 98.4 4.1E-07 1.4E-11 91.9 8.6 68 197-278 154-232 (550)
204 1jal_A YCHF protein; nucleotid 98.3 3.8E-06 1.3E-10 80.2 12.5 36 197-232 66-108 (363)
205 3ec1_A YQEH GTPase; atnos1, at 98.3 1.9E-06 6.5E-11 82.7 9.7 118 191-347 42-159 (369)
206 1yrb_A ATP(GTP)binding protein 98.2 2.6E-06 8.7E-11 77.1 8.6 127 197-348 109-255 (262)
207 3j25_A Tetracycline resistance 98.2 1.1E-06 3.7E-11 90.4 6.6 82 182-278 52-133 (638)
208 2ohf_A Protein OLA1, GTP-bindi 97.7 7.8E-05 2.7E-09 71.8 8.0 37 197-233 86-129 (396)
209 1puj_A YLQF, conserved hypothe 97.6 6.3E-05 2.2E-09 69.3 6.3 101 202-349 5-105 (282)
210 2p67_A LAO/AO transport system 97.5 0.0003 1E-08 66.5 9.2 113 195-349 147-260 (341)
211 4fn5_A EF-G 1, elongation fact 97.3 0.00095 3.3E-08 69.3 11.0 68 196-278 84-151 (709)
212 1ni3_A YCHF GTPase, YCHF GTP-b 96.6 0.0043 1.5E-07 59.7 8.0 35 198-232 86-127 (392)
213 3cnl_A YLQF, putative uncharac 96.6 0.0019 6.4E-08 58.7 4.8 87 210-346 11-97 (262)
214 2j37_W Signal recognition part 96.6 0.0064 2.2E-07 60.4 8.9 65 195-277 182-253 (504)
215 3zvr_A Dynamin-1; hydrolase, D 96.0 0.0038 1.3E-07 64.9 4.1 68 197-278 150-231 (772)
216 2p5t_B PEZT; postsegregational 95.7 0.0071 2.4E-07 54.2 4.1 39 21-59 18-56 (253)
217 2qm8_A GTPase/ATPase; G protei 95.7 0.037 1.3E-06 51.9 9.0 35 195-232 146-180 (337)
218 1ye8_A Protein THEP1, hypothet 95.7 0.0048 1.6E-07 52.5 2.5 20 37-56 2-21 (178)
219 1zp6_A Hypothetical protein AT 95.6 0.0045 1.5E-07 52.5 2.3 21 36-56 10-30 (191)
220 4gp7_A Metallophosphoesterase; 95.6 0.0045 1.6E-07 52.1 2.3 18 37-54 11-28 (171)
221 3tlx_A Adenylate kinase 2; str 95.6 0.011 3.9E-07 52.7 4.8 25 32-56 26-50 (243)
222 1kgd_A CASK, peripheral plasma 95.4 0.0059 2E-07 51.7 2.4 21 37-57 7-27 (180)
223 1lvg_A Guanylate kinase, GMP k 95.4 0.0063 2.1E-07 52.5 2.4 21 36-56 5-25 (198)
224 3tr0_A Guanylate kinase, GMP k 95.3 0.007 2.4E-07 51.9 2.4 20 37-56 9-28 (205)
225 1kag_A SKI, shikimate kinase I 95.3 0.0072 2.5E-07 50.3 2.4 23 36-58 5-27 (173)
226 3c8u_A Fructokinase; YP_612366 95.3 0.0093 3.2E-07 51.7 3.1 26 33-58 20-45 (208)
227 3a00_A Guanylate kinase, GMP k 95.2 0.0076 2.6E-07 51.3 2.4 20 38-57 4-23 (186)
228 3lw7_A Adenylate kinase relate 95.2 0.0084 2.9E-07 49.5 2.4 19 37-55 3-21 (179)
229 3umf_A Adenylate kinase; rossm 95.1 0.0078 2.7E-07 53.0 2.2 19 38-56 32-50 (217)
230 3fb4_A Adenylate kinase; psych 95.1 0.0088 3E-07 51.9 2.5 21 36-56 1-21 (216)
231 3kb2_A SPBC2 prophage-derived 95.1 0.009 3.1E-07 49.5 2.4 20 37-56 3-22 (173)
232 2ehv_A Hypothetical protein PH 95.1 0.0086 3E-07 52.9 2.4 20 37-56 32-51 (251)
233 2bdt_A BH3686; alpha-beta prot 95.1 0.009 3.1E-07 50.7 2.4 20 37-56 4-23 (189)
234 1ly1_A Polynucleotide kinase; 95.1 0.0096 3.3E-07 49.7 2.5 20 37-56 4-23 (181)
235 3dl0_A Adenylate kinase; phosp 95.1 0.0096 3.3E-07 51.7 2.5 21 36-56 1-21 (216)
236 3cm0_A Adenylate kinase; ATP-b 95.0 0.011 3.7E-07 49.8 2.7 22 35-56 4-25 (186)
237 2j41_A Guanylate kinase; GMP, 95.0 0.01 3.4E-07 50.9 2.4 21 36-56 7-27 (207)
238 1qhx_A CPT, protein (chloramph 94.9 0.011 3.8E-07 49.4 2.4 20 37-56 5-24 (178)
239 4eun_A Thermoresistant glucoki 94.9 0.011 3.7E-07 50.9 2.4 21 36-56 30-50 (200)
240 3sr0_A Adenylate kinase; phosp 94.8 0.012 4.1E-07 51.3 2.5 21 36-56 1-21 (206)
241 1t9h_A YLOQ, probable GTPase E 94.8 0.019 6.4E-07 53.3 4.0 53 213-278 79-131 (307)
242 3sop_A Neuronal-specific septi 94.8 0.012 4.2E-07 53.5 2.6 22 35-56 2-23 (270)
243 1znw_A Guanylate kinase, GMP k 94.8 0.012 4.1E-07 50.9 2.4 20 37-56 22-41 (207)
244 1knq_A Gluconate kinase; ALFA/ 94.8 0.012 4.2E-07 49.1 2.4 21 36-56 9-29 (175)
245 1s96_A Guanylate kinase, GMP k 94.7 0.012 4.2E-07 51.8 2.4 21 36-56 17-37 (219)
246 1z6g_A Guanylate kinase; struc 94.7 0.012 4.2E-07 51.5 2.4 22 36-57 24-45 (218)
247 3t61_A Gluconokinase; PSI-biol 94.7 0.013 4.4E-07 50.4 2.4 21 36-56 19-39 (202)
248 4a74_A DNA repair and recombin 94.7 0.012 4.2E-07 51.1 2.3 20 37-56 27-46 (231)
249 2qor_A Guanylate kinase; phosp 94.7 0.013 4.3E-07 50.6 2.4 23 34-56 11-33 (204)
250 1htw_A HI0065; nucleotide-bind 94.7 0.013 4.6E-07 48.8 2.4 20 37-56 35-54 (158)
251 2bbw_A Adenylate kinase 4, AK4 94.7 0.013 4.6E-07 52.0 2.5 22 35-56 27-48 (246)
252 3asz_A Uridine kinase; cytidin 94.6 0.015 5.1E-07 50.2 2.7 25 35-59 6-30 (211)
253 3n70_A Transport activator; si 94.6 0.033 1.1E-06 45.3 4.6 38 19-56 8-45 (145)
254 1aky_A Adenylate kinase; ATP:A 94.6 0.015 5E-07 50.7 2.6 23 34-56 3-25 (220)
255 3tau_A Guanylate kinase, GMP k 94.6 0.018 6.1E-07 49.9 3.1 21 37-57 10-30 (208)
256 3uie_A Adenylyl-sulfate kinase 94.6 0.023 8E-07 48.7 3.8 22 35-56 25-46 (200)
257 3vaa_A Shikimate kinase, SK; s 94.6 0.015 5.2E-07 49.9 2.5 21 36-56 26-46 (199)
258 1nks_A Adenylate kinase; therm 94.6 0.015 5.2E-07 49.0 2.5 20 37-56 3-22 (194)
259 1via_A Shikimate kinase; struc 94.5 0.015 5.2E-07 48.7 2.4 20 37-56 6-25 (175)
260 1e4v_A Adenylate kinase; trans 94.5 0.016 5.5E-07 50.3 2.6 21 36-56 1-21 (214)
261 2if2_A Dephospho-COA kinase; a 94.5 0.016 5.5E-07 49.7 2.6 21 37-57 3-23 (204)
262 2jaq_A Deoxyguanosine kinase; 94.5 0.017 5.7E-07 49.3 2.7 20 37-56 2-21 (205)
263 1cke_A CK, MSSA, protein (cyti 94.5 0.016 5.4E-07 50.5 2.5 22 36-57 6-27 (227)
264 2pt5_A Shikimate kinase, SK; a 94.5 0.017 6E-07 47.7 2.7 21 37-57 2-22 (168)
265 3tif_A Uncharacterized ABC tra 94.4 0.016 5.5E-07 51.5 2.4 20 37-56 33-52 (235)
266 3trf_A Shikimate kinase, SK; a 94.4 0.018 6E-07 48.6 2.5 20 37-56 7-26 (185)
267 2bwj_A Adenylate kinase 5; pho 94.4 0.02 6.8E-07 48.7 2.9 22 35-56 12-33 (199)
268 1tev_A UMP-CMP kinase; ploop, 94.4 0.019 6.4E-07 48.5 2.7 22 35-56 3-24 (196)
269 3ec2_A DNA replication protein 94.4 0.016 5.6E-07 48.7 2.2 21 36-56 39-59 (180)
270 1kht_A Adenylate kinase; phosp 94.4 0.018 6.2E-07 48.5 2.5 22 36-57 4-25 (192)
271 2rhm_A Putative kinase; P-loop 94.3 0.019 6.5E-07 48.5 2.6 22 35-56 5-26 (193)
272 1jjv_A Dephospho-COA kinase; P 94.3 0.02 6.7E-07 49.3 2.6 21 37-57 4-24 (206)
273 1rz3_A Hypothetical protein rb 94.3 0.033 1.1E-06 47.9 4.1 23 34-56 21-43 (201)
274 2plr_A DTMP kinase, probable t 94.3 0.021 7.2E-07 48.9 2.8 23 35-57 4-26 (213)
275 1ex7_A Guanylate kinase; subst 94.3 0.022 7.4E-07 48.9 2.7 19 38-56 4-22 (186)
276 1gvn_B Zeta; postsegregational 94.2 0.029 9.8E-07 51.4 3.7 41 15-56 14-54 (287)
277 2pcj_A ABC transporter, lipopr 94.2 0.019 6.4E-07 50.7 2.3 20 37-56 32-51 (224)
278 1y63_A LMAJ004144AAA protein; 94.2 0.023 7.7E-07 48.2 2.7 22 35-56 10-31 (184)
279 2c95_A Adenylate kinase 1; tra 94.2 0.023 7.8E-07 48.1 2.8 23 34-56 8-30 (196)
280 2v54_A DTMP kinase, thymidylat 94.1 0.022 7.7E-07 48.6 2.7 23 35-57 4-26 (204)
281 2iyv_A Shikimate kinase, SK; t 94.1 0.021 7E-07 48.1 2.4 21 37-57 4-24 (184)
282 2cdn_A Adenylate kinase; phosp 94.1 0.023 7.9E-07 48.6 2.7 23 34-56 19-41 (201)
283 3b85_A Phosphate starvation-in 94.1 0.02 6.9E-07 49.9 2.3 20 37-56 24-43 (208)
284 1sgw_A Putative ABC transporte 94.1 0.021 7.2E-07 50.1 2.4 19 37-55 37-55 (214)
285 2eyu_A Twitching motility prot 94.1 0.021 7.1E-07 51.7 2.4 21 36-56 26-46 (261)
286 3iij_A Coilin-interacting nucl 94.0 0.022 7.6E-07 47.8 2.4 22 35-56 11-32 (180)
287 2cbz_A Multidrug resistance-as 94.0 0.022 7.4E-07 50.7 2.4 20 37-56 33-52 (237)
288 2onk_A Molybdate/tungstate ABC 94.0 0.022 7.5E-07 50.8 2.4 20 37-56 26-45 (240)
289 3gfo_A Cobalt import ATP-bindi 94.0 0.022 7.5E-07 52.0 2.4 20 37-56 36-55 (275)
290 1zd8_A GTP:AMP phosphotransfer 94.0 0.023 8E-07 49.7 2.5 22 35-56 7-28 (227)
291 2pbr_A DTMP kinase, thymidylat 94.0 0.026 8.8E-07 47.6 2.7 20 37-56 2-21 (195)
292 1zak_A Adenylate kinase; ATP:A 94.0 0.023 7.9E-07 49.5 2.4 22 35-56 5-26 (222)
293 1nn5_A Similar to deoxythymidy 94.0 0.025 8.7E-07 48.6 2.7 23 34-56 8-30 (215)
294 2ff7_A Alpha-hemolysin translo 94.0 0.024 8.1E-07 50.8 2.5 20 37-56 37-56 (247)
295 2wwf_A Thymidilate kinase, put 93.9 0.026 8.7E-07 48.5 2.6 23 34-56 9-31 (212)
296 3lnc_A Guanylate kinase, GMP k 93.9 0.018 6.1E-07 50.6 1.6 20 37-56 29-48 (231)
297 1mv5_A LMRA, multidrug resista 93.9 0.025 8.7E-07 50.4 2.5 20 37-56 30-49 (243)
298 2w0m_A SSO2452; RECA, SSPF, un 93.9 0.025 8.4E-07 49.1 2.4 20 37-56 25-44 (235)
299 1g6h_A High-affinity branched- 93.8 0.025 8.4E-07 51.0 2.4 20 37-56 35-54 (257)
300 1ji0_A ABC transporter; ATP bi 93.8 0.025 8.5E-07 50.4 2.4 20 37-56 34-53 (240)
301 1b0u_A Histidine permease; ABC 93.8 0.025 8.6E-07 51.1 2.4 20 37-56 34-53 (262)
302 1e6c_A Shikimate kinase; phosp 93.8 0.028 9.7E-07 46.6 2.5 20 37-56 4-23 (173)
303 1vpl_A ABC transporter, ATP-bi 93.8 0.026 8.8E-07 50.9 2.4 20 37-56 43-62 (256)
304 1qf9_A UMP/CMP kinase, protein 93.8 0.028 9.4E-07 47.3 2.5 21 36-56 7-27 (194)
305 3ney_A 55 kDa erythrocyte memb 93.8 0.027 9.1E-07 48.8 2.4 20 37-56 21-40 (197)
306 1c9k_A COBU, adenosylcobinamid 93.8 0.027 9.1E-07 48.1 2.3 19 38-56 2-20 (180)
307 2d2e_A SUFC protein; ABC-ATPas 93.8 0.026 8.9E-07 50.6 2.4 20 37-56 31-50 (250)
308 2xb4_A Adenylate kinase; ATP-b 93.7 0.029 1E-06 49.1 2.7 20 37-56 2-21 (223)
309 2z0h_A DTMP kinase, thymidylat 93.7 0.029 9.8E-07 47.6 2.5 20 37-56 2-21 (197)
310 1ukz_A Uridylate kinase; trans 93.7 0.031 1.1E-06 47.8 2.7 22 35-56 15-36 (203)
311 4g1u_C Hemin import ATP-bindin 93.7 0.026 9E-07 51.1 2.4 20 37-56 39-58 (266)
312 2pze_A Cystic fibrosis transme 93.7 0.027 9.2E-07 49.8 2.4 20 37-56 36-55 (229)
313 2qi9_C Vitamin B12 import ATP- 93.7 0.027 9.2E-07 50.6 2.4 20 37-56 28-47 (249)
314 3be4_A Adenylate kinase; malar 93.7 0.033 1.1E-06 48.5 2.9 22 35-56 5-26 (217)
315 3co5_A Putative two-component 93.7 0.059 2E-06 43.6 4.2 23 33-55 25-47 (143)
316 1odf_A YGR205W, hypothetical 3 93.7 0.049 1.7E-06 50.0 4.2 27 33-59 29-55 (290)
317 2vli_A Antibiotic resistance p 93.7 0.023 7.8E-07 47.6 1.8 21 36-56 6-26 (183)
318 2rcn_A Probable GTPase ENGC; Y 93.7 0.19 6.5E-06 47.5 8.3 85 218-343 128-212 (358)
319 1zuh_A Shikimate kinase; alpha 93.7 0.031 1E-06 46.3 2.5 20 37-56 9-28 (168)
320 2ixe_A Antigen peptide transpo 93.7 0.027 9.4E-07 51.2 2.4 20 37-56 47-66 (271)
321 2ze6_A Isopentenyl transferase 93.6 0.028 9.6E-07 50.4 2.4 19 38-56 4-22 (253)
322 1uf9_A TT1252 protein; P-loop, 93.6 0.033 1.1E-06 47.4 2.7 25 34-58 7-31 (203)
323 2olj_A Amino acid ABC transpor 93.6 0.028 9.6E-07 50.9 2.4 20 37-56 52-71 (263)
324 2nq2_C Hypothetical ABC transp 93.6 0.029 9.8E-07 50.5 2.4 20 37-56 33-52 (253)
325 2ghi_A Transport protein; mult 93.6 0.03 1E-06 50.5 2.5 20 37-56 48-67 (260)
326 2cvh_A DNA repair and recombin 93.6 0.03 1E-06 48.3 2.4 21 37-57 22-42 (220)
327 1uj2_A Uridine-cytidine kinase 93.5 0.035 1.2E-06 49.6 2.8 24 34-57 21-44 (252)
328 2qt1_A Nicotinamide riboside k 93.5 0.035 1.2E-06 47.7 2.7 23 35-57 21-43 (207)
329 2yz2_A Putative ABC transporte 93.5 0.03 1E-06 50.7 2.4 20 37-56 35-54 (266)
330 2pjz_A Hypothetical protein ST 93.5 0.032 1.1E-06 50.5 2.5 20 37-56 32-51 (263)
331 2i3b_A HCR-ntpase, human cance 93.5 0.032 1.1E-06 47.8 2.4 19 37-55 3-21 (189)
332 1lw7_A Transcriptional regulat 93.5 0.033 1.1E-06 52.7 2.7 26 35-60 170-195 (365)
333 2jeo_A Uridine-cytidine kinase 93.5 0.031 1.1E-06 49.6 2.4 24 35-58 25-48 (245)
334 1vht_A Dephospho-COA kinase; s 93.5 0.037 1.3E-06 48.0 2.8 23 35-57 4-26 (218)
335 2zu0_C Probable ATP-dependent 93.4 0.032 1.1E-06 50.6 2.4 20 37-56 48-67 (267)
336 1m7g_A Adenylylsulfate kinase; 93.4 0.056 1.9E-06 46.7 3.8 22 35-56 25-46 (211)
337 2pez_A Bifunctional 3'-phospho 93.3 0.035 1.2E-06 46.5 2.4 21 36-56 6-26 (179)
338 2yvu_A Probable adenylyl-sulfa 93.3 0.035 1.2E-06 46.9 2.4 23 34-56 12-34 (186)
339 2ihy_A ABC transporter, ATP-bi 93.3 0.035 1.2E-06 50.7 2.5 20 37-56 49-68 (279)
340 3aez_A Pantothenate kinase; tr 93.3 0.033 1.1E-06 51.7 2.4 26 34-59 89-114 (312)
341 4e22_A Cytidylate kinase; P-lo 93.2 0.037 1.3E-06 49.5 2.5 22 35-56 27-48 (252)
342 2v9p_A Replication protein E1; 93.2 0.039 1.3E-06 51.1 2.6 24 36-59 127-150 (305)
343 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.043 1.5E-06 49.3 2.8 21 36-56 5-25 (260)
344 3kta_A Chromosome segregation 93.1 0.048 1.6E-06 45.7 2.9 24 37-60 28-51 (182)
345 1jbk_A CLPB protein; beta barr 93.0 0.064 2.2E-06 44.4 3.6 20 36-55 44-63 (195)
346 1n0w_A DNA repair protein RAD5 93.0 0.041 1.4E-06 48.2 2.4 21 37-57 26-46 (243)
347 1cr0_A DNA primase/helicase; R 93.0 0.04 1.4E-06 50.3 2.3 22 37-58 37-58 (296)
348 1ak2_A Adenylate kinase isoenz 92.9 0.044 1.5E-06 48.2 2.6 23 34-56 15-37 (233)
349 1gtv_A TMK, thymidylate kinase 92.9 0.026 8.7E-07 48.6 0.9 20 37-56 2-21 (214)
350 3fvq_A Fe(3+) IONS import ATP- 92.9 0.041 1.4E-06 52.2 2.3 20 37-56 32-51 (359)
351 2bbs_A Cystic fibrosis transme 92.8 0.045 1.5E-06 50.3 2.5 20 37-56 66-85 (290)
352 2grj_A Dephospho-COA kinase; T 92.8 0.053 1.8E-06 46.6 2.8 25 34-58 11-35 (192)
353 3jvv_A Twitching mobility prot 92.7 0.045 1.5E-06 51.8 2.4 19 37-55 125-143 (356)
354 1z47_A CYSA, putative ABC-tran 92.7 0.046 1.6E-06 51.7 2.4 20 37-56 43-62 (355)
355 3r20_A Cytidylate kinase; stru 92.7 0.051 1.7E-06 48.3 2.6 23 34-56 8-30 (233)
356 2f1r_A Molybdopterin-guanine d 92.7 0.03 1E-06 47.2 1.0 20 37-56 4-23 (171)
357 1nlf_A Regulatory protein REPA 92.6 0.047 1.6E-06 49.4 2.3 21 37-57 32-52 (279)
358 1sq5_A Pantothenate kinase; P- 92.6 0.11 3.6E-06 48.0 4.7 25 35-59 80-104 (308)
359 2kjq_A DNAA-related protein; s 92.6 0.048 1.7E-06 44.7 2.2 20 37-56 38-57 (149)
360 2x8a_A Nuclear valosin-contain 92.6 0.049 1.7E-06 49.4 2.4 19 38-56 47-65 (274)
361 2yyz_A Sugar ABC transporter, 92.6 0.049 1.7E-06 51.6 2.4 20 37-56 31-50 (359)
362 2f6r_A COA synthase, bifunctio 92.5 0.059 2E-06 49.1 2.8 23 35-57 75-97 (281)
363 1ltq_A Polynucleotide kinase; 92.5 0.051 1.7E-06 49.5 2.4 21 37-57 4-24 (301)
364 3rlf_A Maltose/maltodextrin im 92.5 0.051 1.7E-06 51.9 2.4 20 37-56 31-50 (381)
365 3nwj_A ATSK2; P loop, shikimat 92.4 0.054 1.8E-06 48.6 2.4 22 35-56 48-69 (250)
366 1ixz_A ATP-dependent metallopr 92.4 0.053 1.8E-06 48.2 2.4 19 38-56 52-70 (254)
367 2it1_A 362AA long hypothetical 92.4 0.052 1.8E-06 51.5 2.4 20 37-56 31-50 (362)
368 3nh6_A ATP-binding cassette SU 92.4 0.041 1.4E-06 50.9 1.7 23 37-59 82-104 (306)
369 2p65_A Hypothetical protein PF 92.4 0.072 2.5E-06 44.1 3.0 22 35-56 43-64 (187)
370 2qag_B Septin-6, protein NEDD5 92.4 0.055 1.9E-06 52.4 2.6 20 36-55 43-62 (427)
371 1v43_A Sugar-binding transport 92.4 0.052 1.8E-06 51.7 2.4 20 37-56 39-58 (372)
372 1g29_1 MALK, maltose transport 92.4 0.052 1.8E-06 51.7 2.4 20 37-56 31-50 (372)
373 2pt7_A CAG-ALFA; ATPase, prote 92.3 0.055 1.9E-06 50.6 2.4 21 36-56 172-192 (330)
374 2gza_A Type IV secretion syste 92.2 0.057 1.9E-06 51.1 2.4 24 35-58 175-198 (361)
375 2vp4_A Deoxynucleoside kinase; 92.1 0.058 2E-06 47.4 2.2 23 35-57 20-42 (230)
376 3tui_C Methionine import ATP-b 92.1 0.06 2.1E-06 51.1 2.4 23 37-59 56-78 (366)
377 3d31_A Sulfate/molybdate ABC t 92.1 0.046 1.6E-06 51.6 1.5 20 37-56 28-47 (348)
378 1in4_A RUVB, holliday junction 92.0 0.13 4.5E-06 47.8 4.6 21 36-56 52-72 (334)
379 2ewv_A Twitching motility prot 92.0 0.064 2.2E-06 51.0 2.4 20 37-56 138-157 (372)
380 3tqc_A Pantothenate kinase; bi 91.9 0.082 2.8E-06 49.3 3.0 25 35-59 92-116 (321)
381 1np6_A Molybdopterin-guanine d 91.9 0.072 2.5E-06 45.0 2.4 19 37-55 8-26 (174)
382 1rj9_A FTSY, signal recognitio 91.8 0.068 2.3E-06 49.4 2.4 24 36-59 103-126 (304)
383 1f2t_A RAD50 ABC-ATPase; DNA d 91.8 0.078 2.7E-06 43.4 2.5 20 38-57 26-45 (149)
384 2npi_A Protein CLP1; CLP1-PCF1 91.8 0.066 2.2E-06 52.5 2.4 22 35-56 138-159 (460)
385 1p9r_A General secretion pathw 91.8 0.067 2.3E-06 51.7 2.4 19 37-55 169-187 (418)
386 3gd7_A Fusion complex of cysti 91.7 0.069 2.3E-06 51.2 2.3 20 37-56 49-68 (390)
387 1iy2_A ATP-dependent metallopr 91.7 0.074 2.5E-06 48.1 2.4 19 38-56 76-94 (278)
388 3ake_A Cytidylate kinase; CMP 91.5 0.081 2.8E-06 45.1 2.4 21 37-57 4-24 (208)
389 1oxx_K GLCV, glucose, ABC tran 91.5 0.047 1.6E-06 51.6 0.9 20 37-56 33-52 (353)
390 3b9q_A Chloroplast SRP recepto 91.5 0.079 2.7E-06 48.9 2.4 20 37-56 102-121 (302)
391 2dr3_A UPF0273 protein PH0284; 91.4 0.08 2.7E-06 46.3 2.3 19 37-55 25-43 (247)
392 3bos_A Putative DNA replicatio 91.4 0.18 6E-06 43.7 4.5 21 35-55 52-72 (242)
393 1bif_A 6-phosphofructo-2-kinas 91.3 0.088 3E-06 51.6 2.7 23 34-56 38-60 (469)
394 2obl_A ESCN; ATPase, hydrolase 91.3 0.084 2.9E-06 49.7 2.5 25 34-58 70-94 (347)
395 1tf7_A KAIC; homohexamer, hexa 91.3 0.078 2.7E-06 52.7 2.3 19 37-55 41-59 (525)
396 4eaq_A DTMP kinase, thymidylat 91.2 0.093 3.2E-06 46.2 2.5 23 34-56 25-47 (229)
397 1u0l_A Probable GTPase ENGC; p 91.2 0.087 3E-06 48.4 2.4 20 37-56 171-190 (301)
398 1lv7_A FTSH; alpha/beta domain 91.1 0.09 3.1E-06 46.7 2.4 21 36-56 46-66 (257)
399 1pzn_A RAD51, DNA repair and r 91.1 0.087 3E-06 49.6 2.3 23 37-59 133-155 (349)
400 1nij_A Hypothetical protein YJ 91.1 0.087 3E-06 48.8 2.3 20 37-56 6-25 (318)
401 2yv5_A YJEQ protein; hydrolase 91.0 0.092 3.2E-06 48.3 2.4 23 36-59 166-188 (302)
402 1tq4_A IIGP1, interferon-induc 91.0 0.2 6.8E-06 48.3 4.8 23 34-56 68-90 (413)
403 1q3t_A Cytidylate kinase; nucl 91.0 0.1 3.5E-06 45.9 2.6 23 34-56 15-37 (236)
404 3pfi_A Holliday junction ATP-d 90.9 0.2 6.7E-06 46.3 4.5 36 21-56 41-76 (338)
405 2w58_A DNAI, primosome compone 90.7 0.11 3.7E-06 44.3 2.4 20 36-55 55-74 (202)
406 4a9a_A Ribosome-interacting GT 90.7 0.35 1.2E-05 46.0 6.2 75 191-277 113-195 (376)
407 3zvl_A Bifunctional polynucleo 90.7 0.1 3.4E-06 50.4 2.4 21 36-56 259-279 (416)
408 3e70_C DPA, signal recognition 90.6 0.11 3.6E-06 48.6 2.4 22 35-56 129-150 (328)
409 1xjc_A MOBB protein homolog; s 90.6 0.12 4E-06 43.6 2.4 19 37-55 6-24 (169)
410 2dpy_A FLII, flagellum-specifi 90.6 0.11 3.7E-06 50.6 2.5 25 34-58 156-180 (438)
411 1p5z_B DCK, deoxycytidine kina 90.5 0.11 3.9E-06 46.4 2.4 23 34-56 23-45 (263)
412 2yhs_A FTSY, cell division pro 90.4 0.11 3.7E-06 51.3 2.4 20 37-56 295-314 (503)
413 1a7j_A Phosphoribulokinase; tr 90.4 0.095 3.2E-06 48.0 1.8 23 35-57 5-27 (290)
414 2qm8_A GTPase/ATPase; G protei 90.4 0.19 6.4E-06 47.1 3.9 22 34-55 54-75 (337)
415 2bjv_A PSP operon transcriptio 90.3 0.25 8.5E-06 44.0 4.5 23 34-56 28-50 (265)
416 1njg_A DNA polymerase III subu 90.3 0.27 9.4E-06 42.0 4.7 19 37-55 47-65 (250)
417 2chg_A Replication factor C sm 90.2 0.26 9E-06 41.6 4.5 19 37-55 40-58 (226)
418 2rcn_A Probable GTPase ENGC; Y 90.1 0.12 4.3E-06 48.8 2.4 20 37-56 217-236 (358)
419 2og2_A Putative signal recogni 90.0 0.13 4.3E-06 48.8 2.4 20 37-56 159-178 (359)
420 1svm_A Large T antigen; AAA+ f 90.0 0.13 4.4E-06 49.1 2.4 21 36-56 170-190 (377)
421 2oap_1 GSPE-2, type II secreti 89.9 0.22 7.5E-06 49.4 4.1 20 37-56 262-281 (511)
422 3lda_A DNA repair protein RAD5 89.8 0.13 4.5E-06 49.4 2.3 20 37-56 180-199 (400)
423 1puj_A YLQF, conserved hypothe 89.7 0.3 1E-05 44.4 4.7 24 33-56 118-141 (282)
424 3h4m_A Proteasome-activating n 89.5 0.15 5.2E-06 45.8 2.4 22 35-56 51-72 (285)
425 3b9p_A CG5977-PA, isoform A; A 89.5 0.15 5.1E-06 46.2 2.4 22 35-56 54-75 (297)
426 1sxj_E Activator 1 40 kDa subu 89.5 0.17 5.8E-06 47.0 2.8 21 37-57 38-58 (354)
427 3cr8_A Sulfate adenylyltranfer 89.5 0.17 5.9E-06 50.7 3.0 23 34-56 368-390 (552)
428 3qks_A DNA double-strand break 89.4 0.18 6.1E-06 43.5 2.7 22 38-59 26-47 (203)
429 1yqt_A RNAse L inhibitor; ATP- 89.3 0.16 5.4E-06 50.8 2.5 20 37-56 49-68 (538)
430 1hqc_A RUVB; extended AAA-ATPa 89.1 0.29 9.8E-06 44.8 4.1 22 35-56 38-59 (324)
431 1t9h_A YLOQ, probable GTPase E 89.1 0.084 2.9E-06 48.9 0.4 21 36-56 174-194 (307)
432 1ewq_A DNA mismatch repair pro 89.1 0.15 5.3E-06 53.0 2.4 22 37-58 578-599 (765)
433 2qz4_A Paraplegin; AAA+, SPG7, 89.0 0.17 5.9E-06 44.7 2.4 21 36-56 40-60 (262)
434 3cf0_A Transitional endoplasmi 89.0 0.17 5.9E-06 46.3 2.4 21 36-56 50-70 (301)
435 3euj_A Chromosome partition pr 89.0 0.16 5.6E-06 49.9 2.4 22 37-58 31-52 (483)
436 1d2n_A N-ethylmaleimide-sensit 89.0 0.39 1.3E-05 42.9 4.7 23 34-56 63-85 (272)
437 2px0_A Flagellar biosynthesis 88.9 0.17 5.8E-06 46.5 2.3 22 37-58 107-128 (296)
438 3b60_A Lipid A export ATP-bind 88.8 0.17 5.8E-06 51.0 2.5 23 37-59 371-393 (582)
439 3gmt_A Adenylate kinase; ssgci 88.8 0.19 6.7E-06 44.4 2.5 23 34-56 7-29 (230)
440 1wb9_A DNA mismatch repair pro 88.7 0.17 5.7E-06 53.0 2.4 21 37-57 609-629 (800)
441 1l8q_A Chromosomal replication 88.6 0.19 6.4E-06 46.3 2.4 21 36-56 38-58 (324)
442 2h92_A Cytidylate kinase; ross 88.6 0.24 8E-06 42.7 2.9 22 36-57 4-25 (219)
443 3b5x_A Lipid A export ATP-bind 88.6 0.18 6.1E-06 50.8 2.4 23 37-59 371-393 (582)
444 3hr8_A Protein RECA; alpha and 88.5 0.19 6.5E-06 47.5 2.3 19 38-56 64-82 (356)
445 2yl4_A ATP-binding cassette SU 88.4 0.18 6.3E-06 50.9 2.4 23 37-59 372-394 (595)
446 1ojl_A Transcriptional regulat 88.4 0.38 1.3E-05 44.1 4.4 24 33-56 23-46 (304)
447 1vma_A Cell division protein F 88.2 0.21 7E-06 46.2 2.4 22 37-58 106-127 (306)
448 1qhl_A Protein (cell division 88.2 0.06 2E-06 47.6 -1.3 22 38-59 30-51 (227)
449 2o8b_B DNA mismatch repair pro 88.1 0.21 7.3E-06 53.7 2.7 22 37-58 791-812 (1022)
450 3cnl_A YLQF, putative uncharac 88.1 0.22 7.7E-06 44.8 2.5 21 36-56 100-120 (262)
451 1yrb_A ATP(GTP)binding protein 88.0 0.24 8.2E-06 43.8 2.7 23 34-56 13-35 (262)
452 4a82_A Cystic fibrosis transme 88.0 0.19 6.5E-06 50.6 2.2 22 37-58 369-390 (578)
453 2ocp_A DGK, deoxyguanosine kin 88.0 0.25 8.7E-06 43.4 2.8 21 36-56 3-23 (241)
454 3ozx_A RNAse L inhibitor; ATP 88.0 0.2 7E-06 50.0 2.4 20 37-56 27-46 (538)
455 3qf4_B Uncharacterized ABC tra 87.9 0.21 7.2E-06 50.5 2.5 23 37-59 383-405 (598)
456 3bk7_A ABC transporter ATP-bin 87.9 0.22 7.4E-06 50.5 2.5 20 37-56 119-138 (607)
457 3j16_B RLI1P; ribosome recycli 87.9 0.21 7.2E-06 50.6 2.4 20 37-56 105-124 (608)
458 3d3q_A TRNA delta(2)-isopenten 87.8 0.22 7.7E-06 46.6 2.4 20 37-56 9-28 (340)
459 3thx_A DNA mismatch repair pro 87.8 0.21 7.2E-06 53.2 2.4 20 37-56 664-683 (934)
460 3crm_A TRNA delta(2)-isopenten 87.6 0.23 8E-06 46.2 2.4 20 37-56 7-26 (323)
461 3qf7_A RAD50; ABC-ATPase, ATPa 87.6 0.23 7.9E-06 46.9 2.4 25 38-62 26-51 (365)
462 3tqf_A HPR(Ser) kinase; transf 87.5 0.26 9E-06 41.7 2.4 20 36-55 17-36 (181)
463 1tf7_A KAIC; homohexamer, hexa 87.5 0.23 7.7E-06 49.4 2.3 21 37-57 283-303 (525)
464 2qmh_A HPR kinase/phosphorylas 87.5 0.26 8.7E-06 42.7 2.3 21 35-55 34-54 (205)
465 4fcw_A Chaperone protein CLPB; 87.5 0.25 8.4E-06 44.9 2.4 20 37-56 49-68 (311)
466 2ga8_A Hypothetical 39.9 kDa p 87.2 0.52 1.8E-05 44.4 4.5 22 35-56 24-45 (359)
467 2p67_A LAO/AO transport system 87.2 0.28 9.4E-06 45.9 2.6 23 34-56 55-77 (341)
468 2v1u_A Cell division control p 87.1 0.34 1.2E-05 45.1 3.2 22 35-56 44-65 (387)
469 3hws_A ATP-dependent CLP prote 87.1 0.64 2.2E-05 43.5 5.1 23 35-57 51-73 (363)
470 3syl_A Protein CBBX; photosynt 87.0 0.26 8.9E-06 44.8 2.3 19 37-55 69-87 (309)
471 1m8p_A Sulfate adenylyltransfe 87.0 0.3 1E-05 49.1 2.9 37 20-56 380-417 (573)
472 2axn_A 6-phosphofructo-2-kinas 87.0 0.25 8.7E-06 49.0 2.4 21 36-56 36-56 (520)
473 2r62_A Cell division protease 87.0 0.18 6E-06 45.0 1.1 20 37-56 46-65 (268)
474 1sxj_C Activator 1 40 kDa subu 87.0 0.54 1.9E-05 43.5 4.5 20 37-56 48-67 (340)
475 3bk7_A ABC transporter ATP-bin 87.0 0.25 8.7E-06 50.0 2.4 20 37-56 384-403 (607)
476 3ozx_A RNAse L inhibitor; ATP 86.9 0.26 8.8E-06 49.2 2.4 20 37-56 296-315 (538)
477 3szr_A Interferon-induced GTP- 86.9 0.21 7.1E-06 50.7 1.7 20 37-56 47-66 (608)
478 2qby_A CDC6 homolog 1, cell di 86.9 0.26 9.1E-06 45.8 2.3 22 35-56 45-66 (386)
479 3qf4_A ABC transporter, ATP-bi 86.7 0.26 9E-06 49.7 2.3 22 37-58 371-392 (587)
480 2zr9_A Protein RECA, recombina 86.7 0.28 9.6E-06 46.1 2.3 19 38-56 64-82 (349)
481 3thx_B DNA mismatch repair pro 86.6 0.23 7.7E-06 52.8 1.8 20 37-56 675-694 (918)
482 1ofh_A ATP-dependent HSL prote 86.6 0.29 9.9E-06 44.2 2.4 22 35-56 50-71 (310)
483 4ag6_A VIRB4 ATPase, type IV s 86.5 0.29 9.8E-06 46.5 2.4 22 35-56 35-56 (392)
484 1g8f_A Sulfate adenylyltransfe 86.5 0.43 1.5E-05 47.3 3.7 35 21-55 380-415 (511)
485 1yqt_A RNAse L inhibitor; ATP- 86.4 0.3 1E-05 48.8 2.5 20 37-56 314-333 (538)
486 1fnn_A CDC6P, cell division co 86.3 0.3 1E-05 45.6 2.4 20 37-56 46-65 (389)
487 3j16_B RLI1P; ribosome recycli 86.3 0.29 1E-05 49.6 2.4 19 38-56 381-399 (608)
488 1um8_A ATP-dependent CLP prote 86.2 0.62 2.1E-05 43.8 4.5 22 35-56 72-93 (376)
489 1xwi_A SKD1 protein; VPS4B, AA 86.1 0.32 1.1E-05 45.0 2.4 21 36-56 46-66 (322)
490 2qby_B CDC6 homolog 3, cell di 86.1 0.61 2.1E-05 43.5 4.4 21 36-56 46-66 (384)
491 4aby_A DNA repair protein RECN 86.1 0.19 6.4E-06 48.0 0.8 24 37-60 62-85 (415)
492 3eie_A Vacuolar protein sortin 85.8 0.34 1.2E-05 44.7 2.4 21 36-56 52-72 (322)
493 4edh_A DTMP kinase, thymidylat 85.8 0.37 1.3E-05 41.9 2.5 21 36-56 7-27 (213)
494 1zu4_A FTSY; GTPase, signal re 85.5 0.35 1.2E-05 44.9 2.4 20 37-56 107-126 (320)
495 3t15_A Ribulose bisphosphate c 85.5 0.35 1.2E-05 44.1 2.3 21 36-56 37-57 (293)
496 3ec1_A YQEH GTPase; atnos1, at 85.5 0.58 2E-05 44.2 3.9 22 34-55 161-182 (369)
497 3v9p_A DTMP kinase, thymidylat 85.5 0.33 1.1E-05 42.7 2.1 23 34-56 24-46 (227)
498 3ux8_A Excinuclease ABC, A sub 85.4 0.31 1.1E-05 49.9 2.1 19 37-55 350-368 (670)
499 2orw_A Thymidine kinase; TMTK, 85.4 0.38 1.3E-05 40.7 2.3 18 38-55 6-23 (184)
500 3pxg_A Negative regulator of g 85.3 0.56 1.9E-05 45.8 3.8 22 35-56 201-222 (468)
No 1
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=100.00 E-value=2.7e-89 Score=649.33 Aligned_cols=325 Identities=41% Similarity=0.700 Sum_probs=307.4
Q ss_pred hhhcceeEEEeccCCCchhHHHhhhHhhcCCCCChhHhhhhhhhhhhHHHHHHHHHHHHHhhcccccCccccHHHHHHHH
Q psy14891 31 QEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTIL 110 (359)
Q Consensus 31 ~~~~~~kvLllG~~~sGKST~~kqmr~l~~~g~~~~E~~~~~~~I~~Nii~~~~~li~~~~~l~i~~~~~~~~~~~~~i~ 110 (359)
+.++++||||||+||||||||+||||+||++||+++|+..|+++||.|++++|+.|++||+.+++++++|++...++.++
T Consensus 3 ~~~~~~klLlLG~geSGKSTi~KQmkiih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~~~~~~~~~~~~~~ 82 (327)
T 3ohm_A 3 DARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPYKYEHNKAHAQLVR 82 (327)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSSTHHHHHHHHHH
T ss_pred hhcccceEEEEcCCCccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccccccCcccCCcHHHHHHHHHhcCChHHHHHHHhccccccCcchhHHhhcchhhccCCCccCccccccccccccceeEE
Q psy14891 111 STMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIET 190 (359)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~Pt~~Dil~~r~~T~G~~~~ 190 (359)
+...... .+++++++++|+.||+||+||+||+|+++|+|+|++.|||++++||+.++|.||.+|++++|.||+|+.+.
T Consensus 83 ~~~~~~~--~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~TiGi~~~ 160 (327)
T 3ohm_A 83 EVDVEKV--SAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEY 160 (327)
T ss_dssp TCCGGGC--CCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHHTTCCCCCCSEEEE
T ss_pred ccccccc--ccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccchhcccCceeeEEEE
Confidence 7644332 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEE
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILF 270 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~ 270 (359)
.+.++++++++||||||+++|++|.+||++++++|||+|+|+|||++.|+.+.+++.+++.+|+++++++++.++|++||
T Consensus 161 ~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~ 240 (327)
T 3ohm_A 161 PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 240 (327)
T ss_dssp EEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEE
T ss_pred EEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 271 LNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 271 ~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
|||+|++++|+ +.++++.|||+|.|+++++++|.+||.++|.++++.+.+.+|+|+|||+|++||+.+|.+|++.|++
T Consensus 241 ~NK~DL~~~ki--~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 241 LNKKDLLEEKI--MYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp EECHHHHHHHT--TTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EECchhhhhhh--ccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 99999999999 8899999999999977899999999999999998777789999999999999999999999999999
Q ss_pred hhhhhccCC
Q psy14891 351 INLQQVTLL 359 (359)
Q Consensus 351 ~~l~~~~l~ 359 (359)
++|+++||+
T Consensus 319 ~~l~~~~l~ 327 (327)
T 3ohm_A 319 LNLKEYNLV 327 (327)
T ss_dssp TTCC-----
T ss_pred HhHHhcCCC
Confidence 999999985
No 2
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=100.00 E-value=2.3e-89 Score=658.47 Aligned_cols=352 Identities=43% Similarity=0.720 Sum_probs=301.1
Q ss_pred CCcCCCCHHHHHHHHhcHHHHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhhHhhcCCCCChhHhhhhhhhhhhHHHH
Q psy14891 2 GACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLS 81 (359)
Q Consensus 2 g~~~s~~~~~~~~~~~s~~Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr~l~~~g~~~~E~~~~~~~I~~Nii~ 81 (359)
|||.| +++++|+++|++||++|++|+++.++++||||||+||||||||+||||++|++||+++|+..|+++||.|+++
T Consensus 1 g~~~~--~~~~~~~~~s~~id~~l~~~~~~~~~~~klLlLG~geSGKST~~KQmkii~~~g~~~~e~~~~~~~i~~N~~~ 78 (353)
T 1cip_A 1 GCTLS--AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQ 78 (353)
T ss_dssp --------------------------------CEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHHTHHHHHHHHHH
T ss_pred CCCCC--HHHHHHHHHHHHHHHHHHHhHHhhcccceEEEEcCCCCCchhHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Confidence 89988 6889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCccccHHHHHHHHccccccCcccCCcHHHHHHHHHhcCChHHHHHHHhccccccCcchhHHhhc
Q psy14891 82 SMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFEN 161 (359)
Q Consensus 82 ~~~~li~~~~~l~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~ 161 (359)
+|+.|+++|+.++++++++++...++.++......+. ..+++++++.|..||+||+||+||.|+++|+|+|++.|||++
T Consensus 79 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~ 157 (353)
T 1cip_A 79 SIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEE-GFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLND 157 (353)
T ss_dssp HHHHHHHHHHHHTCCCSSTTHHHHHHHHHHHHHHHTT-TCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHH
Confidence 9999999999999999999888888888766443322 578999999999999999999999999999999999999999
Q ss_pred chhhccCCCccCccccccccccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCC
Q psy14891 162 MERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDS 241 (359)
Q Consensus 162 ~~ri~~~~y~Pt~~Dil~~r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~ 241 (359)
++|++.++|.||.+|++++|.||+|+.+..|.++++++++||||||+++|++|.+||+++++||||+|+++||+++.||+
T Consensus 158 ~~ri~~~~Y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~ 237 (353)
T 1cip_A 158 LDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237 (353)
T ss_dssp HHHHTSTTCCCCHHHHHTCCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEE
T ss_pred HHHHhcCCCCCCccccccccCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccC-C
Q psy14891 242 SVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHN-S 320 (359)
Q Consensus 242 ~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~-~ 320 (359)
+.++|.+++.||+++++++++.++|++||+||+|++++|+ ..++|+.|||+|.|+ ++.+++.+|+..+|..+++. .
T Consensus 238 ~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki--~~~~l~~~fp~~~g~-~~~~e~~~~~~~~f~~l~~~~~ 314 (353)
T 1cip_A 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKI--KKSPLTICYPEYAGS-NTYEEAAAYIQCQFEDLNKRKD 314 (353)
T ss_dssp EEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHH--TTSCGGGTCTTCCSC-SCHHHHHHHHHHHHHTTCSCTT
T ss_pred hhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhc--cccchhhcccccCCC-CCHHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999999999999999999999999999 889999999999998 89999999999999998764 2
Q ss_pred CCceEEEEeeccCCchHHHHHHHHHHHHHHhhhhhccCC
Q psy14891 321 AKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359 (359)
Q Consensus 321 ~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l~~~~l~ 359 (359)
.+.+++|+|||+|++||+.+|+.+.+.|++.+|+++||+
T Consensus 315 ~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l~~~~l~ 353 (353)
T 1cip_A 315 TKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353 (353)
T ss_dssp TCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-------
T ss_pred CCceEEEEEECcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 478999999999999999999999999999999999985
No 3
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=100.00 E-value=1.3e-88 Score=660.24 Aligned_cols=357 Identities=40% Similarity=0.659 Sum_probs=297.7
Q ss_pred CCCcCCCC-----HHHHHHHHhcHHHHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhhHhhcCCCCChh---------
Q psy14891 1 MGACISLD-----SEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTRE--------- 66 (359)
Q Consensus 1 mg~~~s~~-----~~~~~~~~~s~~Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr~l~~~g~~~~--------- 66 (359)
||||.|+. .++++++++|++||++|++|+++.++++||||||+||||||||+|||||||++||+++
T Consensus 1 mg~~~s~~~~~~~~~~~~~~~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmkiih~~gfs~~E~~~~~~~~ 80 (402)
T 1azs_C 1 MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAA 80 (402)
T ss_dssp -----------------------------------CCTTEEEEEEEESTTSSHHHHHHHHHHHHCCC-------------
T ss_pred CCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHhhccceEEEecCCCCchhhHHHHHHHHhCCCCChHHhhhhHHHH
Confidence 99999862 2467899999999999999999999999999999999999999999999999999986
Q ss_pred ------HhhhhhhhhhhHHHHHHHHHHHHHhhcc--cccCccccHHHHHHHHccccccCcccCCcHHHHHHHHHhcCChH
Q psy14891 67 ------ELESFKPTVMDNLLSSMKYVLGGMGILR--INLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRG 138 (359)
Q Consensus 67 ------E~~~~~~~I~~Nii~~~~~li~~~~~l~--i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~LW~d~~ 138 (359)
|+..|+++||.|++++|+.|+++|..++ +++++|++...++.++......+ ..++++++++|+.||+||+
T Consensus 81 ~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~lW~d~~ 158 (402)
T 1azs_C 81 RSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANPENQFRVDYILSVMNVPD--FDFPPEFYEHAKALWEDEG 158 (402)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCSSGGGHHHHHHHHHTTTCSS--CCCCHHHHHHHHHHHHCHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHhhcccCC--CCCCHHHHHHHHHHHcCHH
Confidence 6778999999999999999999999997 78889998888888876643222 4789999999999999999
Q ss_pred HHHHHHhccccccCcchhHHhhcchhhccCCCccCccccccccccccceeEEEEeeCCceeeEEecCCccccccchhhhc
Q psy14891 139 VRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCF 218 (359)
Q Consensus 139 iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~Pt~~Dil~~r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f 218 (359)
||+||.|+++|+|+|++.|||++++||+.++|.||.+|++++|.+|+|+.+..|.+++++++|||||||+++|++|.+||
T Consensus 159 iq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf 238 (402)
T 1azs_C 159 VRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCF 238 (402)
T ss_dssp HHHHHTTGGGSCCCTTHHHHHTTHHHHTCTTCCCCHHHHHHCCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGT
T ss_pred HHHHHHhcccceeccchhhHHHHHHHhhccccCCccccccccccceeeeEEEEeecCCccceecccchhhhhhhhhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccC-
Q psy14891 219 DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKG- 297 (359)
Q Consensus 219 ~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g- 297 (359)
++++++|||||+++|||++.||++.++|.++..||+++++++++.++|++|||||+|++.+|+....++|++|||+|.|
T Consensus 239 ~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~ 318 (402)
T 1azs_C 239 NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 318 (402)
T ss_dssp TTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTC
T ss_pred cCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhcccccccc
Confidence 9999999999999999999999999999999999999999988999999999999999998882225799999999985
Q ss_pred -----------CCCCHHHHHHHHHHHHhhhccC---CCCceEEEEeeccCCchHHHHHHHHHHHHHHhhhhhccCC
Q psy14891 298 -----------PDFDVDSGALFIQHKFALRNHN---SAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359 (359)
Q Consensus 298 -----------~~~~~~~a~~fi~~~f~~~~~~---~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l~~~~l~ 359 (359)
++.+.++|..||.++|...++. ..+.+|+|+|||+||+||+.+|.+|++.|++.+|+++||+
T Consensus 319 ~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~~l~~~~~~ 394 (402)
T 1azs_C 319 TTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394 (402)
T ss_dssp CCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 1124789999999999887642 2357999999999999999999999999999999999985
No 4
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=100.00 E-value=5.2e-88 Score=651.08 Aligned_cols=353 Identities=38% Similarity=0.635 Sum_probs=294.0
Q ss_pred CCCcCCCCHHHHHHHHhcHHHHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhhHhhcCCCCChhHhhhhhhhhhhHHH
Q psy14891 1 MGACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLL 80 (359)
Q Consensus 1 mg~~~s~~~~~~~~~~~s~~Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr~l~~~g~~~~E~~~~~~~I~~Nii 80 (359)
||||.| +++++|+++|++||++|++++++.++.+||||||+||||||||+||||++|.+||+++|+..|+..|+.|++
T Consensus 1 mgc~~~--~~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~~~~~~~~e~~~~~~~i~~n~~ 78 (362)
T 1zcb_A 1 MGCTLS--AEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVI 78 (362)
T ss_dssp --------------------------------CCCEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHH
T ss_pred CCCCCC--HHHHHHHHHHHHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHH
Confidence 999999 688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCccccHHHHHHHHccccccC-------cccCCcHHHHHHHHHhcCChHHHHHHHhccccccCc
Q psy14891 81 SSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFD-------EEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELND 153 (359)
Q Consensus 81 ~~~~~li~~~~~l~i~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d 153 (359)
.+|+.||++|+.+++++++|++...+..++....... +...+ +++++.|+.||+||+||+||+|+++|+|+|
T Consensus 79 ~s~~~il~a~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~~~r~~e~~l~d 157 (362)
T 1zcb_A 79 KGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNAYDRRREFQLGE 157 (362)
T ss_dssp HHHHHHHHHHHHTTCCCSSGGGHHHHHHHHTSCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHHHHTGGGSCCCT
T ss_pred HHHHHHHHHHHHcCCCCCCcccHHHHHHHHhhcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHHHHhcchhhhcc
Confidence 9999999999999999999998888888876644211 11346 899999999999999999999999999999
Q ss_pred chhHHhhcchhhccCCCccCccccccccccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCC
Q psy14891 154 SALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGY 233 (359)
Q Consensus 154 ~~~yfl~~~~ri~~~~y~Pt~~Dil~~r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~y 233 (359)
++.|||++++||+.++|.||.+|++++|.+|+|+.+..|.++++++++||||||+++|++|.+||+++++||||+|+|+|
T Consensus 158 s~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~ 237 (362)
T 1zcb_A 158 SVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEF 237 (362)
T ss_dssp THHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCT
T ss_pred cHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHH
Q psy14891 234 DMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKF 313 (359)
Q Consensus 234 d~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f 313 (359)
||+|.||++.|++.+++.||.++++++++.++|+|||+||+|++++|+ +.++|+.|||+|.|++++.+++.+|+..+|
T Consensus 238 dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki--~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f 315 (362)
T 1zcb_A 238 DQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKV--QVVSIKDYFLEFEGDPHCLRDVQKFLVECF 315 (362)
T ss_dssp TCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHT--TTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhc--cccchhhcCccccCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 899999999999996578999999999999
Q ss_pred hhhccCC-CCceEEEEeeccCCchHHHHHHHHHHHHHHhhhhhccCC
Q psy14891 314 ALRNHNS-AKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359 (359)
Q Consensus 314 ~~~~~~~-~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l~~~~l~ 359 (359)
..+++.. .+.+|+|+|||+||+||+.+|+.+.+.|++.+|++ ||+
T Consensus 316 ~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l~~-~l~ 361 (362)
T 1zcb_A 316 RGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQ-LML 361 (362)
T ss_dssp HTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHHHh-hcc
Confidence 9987643 46799999999999999999999999999999999 975
No 5
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=100.00 E-value=4.9e-86 Score=629.11 Aligned_cols=317 Identities=33% Similarity=0.605 Sum_probs=296.9
Q ss_pred hcceeEEEeccCCCchhHHHhhhHhhcCCCCChhHhhhhhhhhhhHHHHHHHHHHHHHhhcccccCccccHHHHHHHHcc
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILST 112 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqmr~l~~~g~~~~E~~~~~~~I~~Nii~~~~~li~~~~~l~i~~~~~~~~~~~~~i~~~ 112 (359)
++++||||||+||||||||+||||+||++||+++|+..|+++||.|++++|+.|+++|+.+++++++|.+...+ ++.
T Consensus 3 ~~~~klLLLG~geSGKSTi~KQmkii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~~~~~~~~~---~~~ 79 (340)
T 4fid_A 3 AKPITVMLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMKYQPKSKEF---TTE 79 (340)
T ss_dssp -CCEEEEEEECTTSSHHHHHHHHHHHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCSGGG---SCC
T ss_pred CCcceEEEECCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCChhhHHHH---hhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999887654 222
Q ss_pred ccccCcccCCcHHHHHHHHHhcCChHHHHHHHhccccccCcchhHHhhcchhhccCCCccCccccccccccccceeEEEE
Q psy14891 113 MCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNF 192 (359)
Q Consensus 113 ~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~Pt~~Dil~~r~~T~G~~~~~~ 192 (359)
. .....++++++++|+.||+||+||+||+|+++|+|+|++.|||++++|++.++|.||.+|++++|.+|+|+.+..+
T Consensus 80 ~---~~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~ 156 (340)
T 4fid_A 80 D---PVTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTGIHEYDF 156 (340)
T ss_dssp S---CCCSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCSCEEEEE
T ss_pred c---cCCCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceeeeEEEEE
Confidence 1 2236799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEee
Q psy14891 193 RLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLN 272 (359)
Q Consensus 193 ~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~N 272 (359)
.++++++++||||||+++|++|.+||+++++||||+|+|+|||++.|+.+.+++.+++.||.++++++++.++|++||||
T Consensus 157 ~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~N 236 (340)
T 4fid_A 157 VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLN 236 (340)
T ss_dssp ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEE
T ss_pred EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHH------hhhccCCC-----------CceEEEEeeccCCc
Q psy14891 273 KFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKF------ALRNHNSA-----------KVIYPHFTTATDTS 335 (359)
Q Consensus 273 K~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f------~~~~~~~~-----------~~i~~~~tsA~d~~ 335 (359)
|+|++++|+ ..++++.|||+|.|+ +++++|.+||.++| .++++.+. +.+|+|+|||+|+.
T Consensus 237 K~DL~~eki--~~~~l~~~fp~y~g~-~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~ 313 (340)
T 4fid_A 237 KMDLFEEKL--TKVPLNTIFPEYTGG-DNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGS 313 (340)
T ss_dssp CHHHHHHHH--HHSCGGGTCTTCCCT-TCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHH
T ss_pred Cchhhhhhc--CcchHHHhhhhhcCC-CCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcH
Confidence 999999999 889999999999998 68999999999999 77776544 68999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhccCC
Q psy14891 336 NVQTVFHAVMDLVIKINLQQVTLL 359 (359)
Q Consensus 336 ni~~vf~~v~~~Il~~~l~~~~l~ 359 (359)
||+.+|.+|++.|++ ||+++||+
T Consensus 314 nv~~vF~~v~~~Il~-~l~~~~~~ 336 (340)
T 4fid_A 314 NIKRVFMLAVDVIMK-NMAANGKM 336 (340)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTTCC
T ss_pred HHHHHHHHHHHHHHH-HHHHcCCC
Confidence 999999999999999 99999975
No 6
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=100.00 E-value=7.6e-77 Score=571.30 Aligned_cols=323 Identities=36% Similarity=0.608 Sum_probs=288.5
Q ss_pred hcceeEEEeccCCCchhHHHhhhHhhcCCCCChhHhhhhhhhhhhHHHHHHHHHHHHHhhcccccC-------ccccHHH
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQ-------SAKNKNY 105 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqmr~l~~~g~~~~E~~~~~~~I~~Nii~~~~~li~~~~~l~i~~~-------~~~~~~~ 105 (359)
.+++||||||+||||||||+||||++|.+||+++|+..|+++|+.|++++|+.|+++|+.++++.. +|++...
T Consensus 7 ~~~~k~lllG~~~sGKsT~~kq~~~~~~~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~~~l~~~~~~~~~~~l~~~~~~~ 86 (354)
T 2xtz_A 7 IHIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAI 86 (354)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCTTCCCHHHHHH
T ss_pred CCceeEEEECCCCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCChhHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999987765 4455554
Q ss_pred HHHHHccccccCcccCCcHHHHHHHHHhcCChHHHHHHHhccccccCcchhHHhhcchhhccCCCccCcccccccccccc
Q psy14891 106 AKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTN 185 (359)
Q Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~i~~LW~d~~iq~~~~~~~~~~l~d~~~yfl~~~~ri~~~~y~Pt~~Dil~~r~~T~ 185 (359)
+..+.......+. +.++++++++|+.||+||+||+||.|+++|+|+|++.|||++++|++.++|.||.+|+++++.+|+
T Consensus 87 ~~~~~~~~~~~~~-~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T~ 165 (354)
T 2xtz_A 87 GEKLSEIGGRLDY-PRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTT 165 (354)
T ss_dssp HHHHHHHHHHCSS-CCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHSTTCCCCHHHHHHCCCCCC
T ss_pred HHHHHhccccccc-ccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhcCCCCCCchheeeeccccc
Confidence 5555443322222 578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEee------CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc
Q psy14891 186 GIIETNFRL------GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259 (359)
Q Consensus 186 G~~~~~~~~------~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~ 259 (359)
|+.+..|.+ +.+++++||||||+++|++|.+||++++++|||+|+++|||+|.|+.+.+++.++..||++++++
T Consensus 166 Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~ 245 (354)
T 2xtz_A 166 GVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ 245 (354)
T ss_dssp SEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC
T ss_pred ceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc
Confidence 999999988 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEeeCCCcchhhhhhcCCccccc--ccccc----CCCCCHHHHHHHHHHHHhhhc---cCC---CCceEEE
Q psy14891 260 RYFREASFILFLNKFDLFREKILYSGRHLRYY--LSDFK----GPDFDVDSGALFIQHKFALRN---HNS---AKVIYPH 327 (359)
Q Consensus 260 ~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~--fp~y~----g~~~~~~~a~~fi~~~f~~~~---~~~---~~~i~~~ 327 (359)
+++.++|++|||||+|++++|+ ..++++.+ ||+|. |+ ++.++|.+|+.++|..++ ..+ .+.+|+|
T Consensus 246 ~~~~~~piiLvgNK~DL~~~k~--~~v~l~~~~~fp~y~~~~~~~-~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 322 (354)
T 2xtz_A 246 PCFEKTSFMLFLNKFDIFEKKV--LDVPLNVCEWFRDYQPVSSGK-QEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIY 322 (354)
T ss_dssp GGGSSCEEEEEEECHHHHHHHT--TTSCGGGSGGGTTCCCCSSHH-HHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEE
T ss_pred cccCCCeEEEEEECcchhhhhc--ccccccccccccccccccCCC-cCHHHHHHHHHHHHHHhhhccccccccCcceEEE
Confidence 8889999999999999999998 77888776 99997 44 578999999999998762 211 3568899
Q ss_pred EeeccCCchHHHHHHHHHHHHHHhhhhhccCC
Q psy14891 328 FTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359 (359)
Q Consensus 328 ~tsA~d~~ni~~vf~~v~~~Il~~~l~~~~l~ 359 (359)
+|||+|++||+++|+.+++.|++.+|+++||+
T Consensus 323 eTSA~d~~nV~~vF~~v~~~I~~~~l~~~~l~ 354 (354)
T 2xtz_A 323 RTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 354 (354)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred EEEeecchhHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999985
No 7
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.93 E-value=1.3e-25 Score=201.48 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=101.2
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
++++||||+||++++.+|..||++++++|+|+|+++ ..++.+...|+..+.... ..++|++|||||+|+
T Consensus 62 v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~----------~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl 130 (216)
T 4dkx_A 62 IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN----------VNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDL 130 (216)
T ss_dssp EEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTC
T ss_pred EEEEEEECCCchhhhhHHHHHhccccEEEEEeecch----------hHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccch
Confidence 789999999999999999999999999999999999 888888888888886543 467999999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
..++. .+.+++.+|+.+ ..+.+++|||+++.||+++|..+++.|.+
T Consensus 131 ~~~r~------------------V~~~e~~~~a~~----------~~~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 131 ADKRQ------------------VSIEEGERKAKE----------LNVMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp GGGCC------------------SCHHHHHHHHHH----------HTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred HhcCc------------------ccHHHHhhHHHH----------hCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 87766 788999999886 34678899999999999999999988864
No 8
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.88 E-value=1.7e-21 Score=165.90 Aligned_cols=133 Identities=19% Similarity=0.223 Sum_probs=106.3
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+.+++..+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...++..++.....
T Consensus 37 ~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 106 (171)
T 1upt_A 37 PTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD----------RDRIGISKSELVAMLEEEEL 106 (171)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTC----------CTTHHHHHHHHHHHHTCGGG
T ss_pred CcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhh
Confidence 56777777778888999999999999999999999999999999999998 77888899999999877656
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|++|++||+|+..+. +.++..+.+... ....+.+.+++|||+++.||.++|+
T Consensus 107 ~~~piilv~nK~Dl~~~~--------------------~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (171)
T 1upt_A 107 RKAILVVFANKQDMEQAM--------------------TSSEMANSLGLP-----ALKDRKWQIFKTSATKGTGLDEAME 161 (171)
T ss_dssp TTCEEEEEEECTTSTTCC--------------------CHHHHHHHHTGG-----GCTTSCEEEEECCTTTCTTHHHHHH
T ss_pred CCCEEEEEEECCCCcCCC--------------------CHHHHHHHhCch-----hccCCceEEEECcCCCCcCHHHHHH
Confidence 789999999999986531 222222222111 1112557889999999999999999
Q ss_pred HHHHHHHH
Q psy14891 343 AVMDLVIK 350 (359)
Q Consensus 343 ~v~~~Il~ 350 (359)
.+.+.+.+
T Consensus 162 ~l~~~i~~ 169 (171)
T 1upt_A 162 WLVETLKS 169 (171)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99988754
No 9
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.88 E-value=1.5e-21 Score=169.27 Aligned_cols=133 Identities=20% Similarity=0.253 Sum_probs=104.8
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+.++++.+++|||+|++.++..|..|+++++++|+|+|+++ ..++.+...++..++.....
T Consensus 46 ~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 115 (181)
T 1fzq_A 46 PTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD----------RKRFEETGQELTELLEEEKL 115 (181)
T ss_dssp EETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHTTCGGG
T ss_pred CcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhChhh
Confidence 67777777777888999999999999999999999999999999999998 78888888899988776556
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|++|++||+|+..+. ..++..+.+. ......+.+.+++|||++++||.++|+
T Consensus 116 ~~~piilv~NK~Dl~~~~--------------------~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 170 (181)
T 1fzq_A 116 SCVPVLIFANKQDLLTAA--------------------PASEIAEGLN-----LHTIRDRVWQIQSCSALTGEGVQDGMN 170 (181)
T ss_dssp TTCCEEEEEECTTSTTCC--------------------CHHHHHHHTT-----GGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred cCCCEEEEEECcCcccCC--------------------CHHHHHHHhC-----chhccCCceEEEEccCCCCCCHHHHHH
Confidence 789999999999986431 2222222211 111123557789999999999999999
Q ss_pred HHHHHHHH
Q psy14891 343 AVMDLVIK 350 (359)
Q Consensus 343 ~v~~~Il~ 350 (359)
.+.+.+.+
T Consensus 171 ~l~~~~~~ 178 (181)
T 1fzq_A 171 WVCKNVNA 178 (181)
T ss_dssp HHHHTC--
T ss_pred HHHHHHHh
Confidence 99887654
No 10
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.87 E-value=1.3e-21 Score=165.61 Aligned_cols=133 Identities=19% Similarity=0.249 Sum_probs=103.1
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+..+++.+++||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+......
T Consensus 30 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 99 (164)
T 1r8s_A 30 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDEL 99 (164)
T ss_dssp CCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGG
T ss_pred CcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhh
Confidence 46666666667778999999999999999999999999999999999998 78888888999999877666
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|++|++||+|+..+ . ..++..+... ......+.+.+++|||+++.||+++|+
T Consensus 100 ~~~piilv~nK~Dl~~~-~-------------------~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (164)
T 1r8s_A 100 RDAVLLVFANKQDLPNA-M-------------------NAAEITDKLG-----LHSLRHRNWYIQATCATSGDGLYEGLD 154 (164)
T ss_dssp TTCEEEEEEECTTSTTC-C-------------------CHHHHHHHTT-----GGGCSSCCEEEEECBTTTTBTHHHHHH
T ss_pred cCCeEEEEEECcCCcCC-C-------------------CHHHHHHHhC-----cccccCccEEEEEcccCCCcCHHHHHH
Confidence 78999999999998542 1 1222222111 111112456788999999999999999
Q ss_pred HHHHHHHH
Q psy14891 343 AVMDLVIK 350 (359)
Q Consensus 343 ~v~~~Il~ 350 (359)
.+.+.+.+
T Consensus 155 ~l~~~i~~ 162 (164)
T 1r8s_A 155 WLSNQLRN 162 (164)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhh
Confidence 99887654
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.87 E-value=2.7e-21 Score=170.63 Aligned_cols=124 Identities=18% Similarity=0.155 Sum_probs=101.4
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+++||++|+++++..|..|+++++++|+|+|+++ ..++.+...|+..+.... ..++|+
T Consensus 69 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~-~~~~pi 137 (201)
T 2hup_A 69 KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITK----------RSSFLSVPHWIEDVRKYA-GSNIVQ 137 (201)
T ss_dssp EEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTB----------HHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred EEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 4444554 689999999999999999999999999999999998 667777777777776542 367899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCchHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
+||+||+|+..++. .+.+++.+++.. ..+ .+++|||++++||.++|+.+.+
T Consensus 138 ilv~NK~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~~SA~~g~gi~~l~~~l~~ 189 (201)
T 2hup_A 138 LLIGNKSDLSELRE------------------VSLAEAQSLAEH----------YDILCAIETSAKDSSNVEEAFLRVAT 189 (201)
T ss_dssp EEEEECTTCGGGCC------------------SCHHHHHHHHHH----------TTCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred EEEEECCccccccc------------------cCHHHHHHHHHH----------cCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999976543 456777777665 345 7789999999999999999999
Q ss_pred HHHHhh
Q psy14891 347 LVIKIN 352 (359)
Q Consensus 347 ~Il~~~ 352 (359)
.+.++.
T Consensus 190 ~i~~~~ 195 (201)
T 2hup_A 190 ELIMRH 195 (201)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 988653
No 12
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.87 E-value=3.2e-21 Score=167.73 Aligned_cols=135 Identities=17% Similarity=0.218 Sum_probs=107.0
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+.+++..+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...++..++.....
T Consensus 52 ~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 121 (189)
T 2x77_A 52 PTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTD----------RDRMGVAKHELYALLDEDEL 121 (189)
T ss_dssp SSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTC----------CTTHHHHHHHHHHHHTCSTT
T ss_pred CCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhhhhc
Confidence 56666666777788999999999999999999999999999999999998 77889999999999887666
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|+++++||+|+..+. +.++..+.+. ......+.+.+++|||++++||+++|+
T Consensus 122 ~~~piilv~nK~Dl~~~~--------------------~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (189)
T 2x77_A 122 RKSLLLIFANKQDLPDAA--------------------SEAEIAEQLG-----VSSIMNRTWTIVKSSSKTGDGLVEGMD 176 (189)
T ss_dssp TTCEEEEEEECTTSTTCC--------------------CHHHHHHHTT-----GGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred CCCeEEEEEECCCCcCCC--------------------CHHHHHHHhC-----hhhccCCceEEEEccCCCccCHHHHHH
Confidence 789999999999986431 1222222111 111113457789999999999999999
Q ss_pred HHHHHHHHhh
Q psy14891 343 AVMDLVIKIN 352 (359)
Q Consensus 343 ~v~~~Il~~~ 352 (359)
.+.+.+.+..
T Consensus 177 ~l~~~i~~~~ 186 (189)
T 2x77_A 177 WLVERLREQG 186 (189)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcc
Confidence 9999887653
No 13
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.87 E-value=1.9e-21 Score=171.21 Aligned_cols=134 Identities=13% Similarity=0.172 Sum_probs=98.4
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+|.....+.++++.+++|||+||+.++..|..|+++++++|+|+|+++ ..++.+...|+..+.......
T Consensus 56 t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~ 125 (198)
T 1f6b_A 56 TLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD----------HERLLESKEELDSLMTDETIA 125 (198)
T ss_dssp CCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGT
T ss_pred CCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcccC
Confidence 4444445666778999999999999999999999999999999999998 788999999999998765567
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhh-------hccCCCCceEEEEeeccCCch
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFAL-------RNHNSAKVIYPHFTTATDTSN 336 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~-------~~~~~~~~i~~~~tsA~d~~n 336 (359)
++|++|++||+|+.. . .+.+++.+++...... +.....+.+.+++|||++++|
T Consensus 126 ~~piilv~NK~Dl~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 185 (198)
T 1f6b_A 126 NVPILILGNKIDRPE-A-------------------ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQG 185 (198)
T ss_dssp TSCEEEEEECTTSTT-C-------------------CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBS
T ss_pred CCcEEEEEECCCccc-c-------------------CCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCC
Confidence 899999999999864 2 2344444443321100 000012457789999999999
Q ss_pred HHHHHHHHHHH
Q psy14891 337 VQTVFHAVMDL 347 (359)
Q Consensus 337 i~~vf~~v~~~ 347 (359)
|+++|+.+.+.
T Consensus 186 v~~l~~~l~~~ 196 (198)
T 1f6b_A 186 YGEGFRWMAQY 196 (198)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 14
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.87 E-value=3.2e-21 Score=169.87 Aligned_cols=123 Identities=17% Similarity=0.125 Sum_probs=100.0
Q ss_pred EEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEE
Q psy14891 191 NFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFI 268 (359)
Q Consensus 191 ~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ii 268 (359)
.+.+++ +.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..++|++
T Consensus 66 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pii 134 (200)
T 2o52_A 66 VVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNSLAAWLTDARTLA-SPNIVVI 134 (200)
T ss_dssp EEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHT-CTTCEEE
T ss_pred EEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCcEE
Confidence 344444 789999999999999999999999999999999998 667777777777765432 3578999
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
||+||+|+..++. .+.+++.+++.. ..+.+++|||+++.||.++|+.+.+.+
T Consensus 135 lv~nK~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 135 LCGNKKDLDPERE------------------VTFLEASRFAQE----------NELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp EEEECGGGGGGCC------------------SCHHHHHHHHHH----------TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEECCCcccccc------------------cCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999876543 456677777654 446788999999999999999999998
Q ss_pred HHhh
Q psy14891 349 IKIN 352 (359)
Q Consensus 349 l~~~ 352 (359)
+++.
T Consensus 187 ~~~~ 190 (200)
T 2o52_A 187 LNKI 190 (200)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.87 E-value=9.9e-21 Score=165.45 Aligned_cols=136 Identities=18% Similarity=0.266 Sum_probs=107.0
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
+|+|+....+...++.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+......
T Consensus 49 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~~ 118 (199)
T 4bas_A 49 ATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSD----------HLRLCVVKSEIQAMLKHEDI 118 (199)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTSHHH
T ss_pred cccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCc----------HHHHHHHHHHHHHHHhChhh
Confidence 46676666777788999999999999999999999999999999999998 78888888999998775332
Q ss_pred -------CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc
Q psy14891 263 -------REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS 335 (359)
Q Consensus 263 -------~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ 335 (359)
.++|++||+||+|+..+. ..++..+.+...+.. ....+.+++|||++++
T Consensus 119 ~~~~~~~~~~piilv~NK~Dl~~~~--------------------~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~ 174 (199)
T 4bas_A 119 RRELPGGGRVPFLFFANKMDAAGAK--------------------TAAELVEILDLTTLM----GDHPFVIFASNGLKGT 174 (199)
T ss_dssp HSBCTTSCBCCEEEEEECTTSTTCC--------------------CHHHHHHHHTHHHHH----TTSCEEEEECBTTTTB
T ss_pred hhcccccCCCCEEEEEECcCCCCCC--------------------CHHHHHHHhcchhhc----cCCeeEEEEeeCCCcc
Confidence 378999999999986531 223333322221110 1256788999999999
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy14891 336 NVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 336 ni~~vf~~v~~~Il~~~ 352 (359)
||+++|+.+.+.+.+..
T Consensus 175 gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 175 GVHEGFSWLQETASRQS 191 (199)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 16
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.87 E-value=6.3e-21 Score=164.92 Aligned_cols=123 Identities=17% Similarity=0.142 Sum_probs=99.5
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..+.|+
T Consensus 50 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~pi 118 (186)
T 2bme_A 50 KIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS----------RETYNALTNWLTDARMLA-SQNIVI 118 (186)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred EEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 3444444 789999999999999999999999999999999998 666666667776665432 357899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+|++||+|+..++. .+.+++.++... ..+.+++|||++++||+++|+.+.+.
T Consensus 119 ilv~nK~Dl~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (186)
T 2bme_A 119 ILCGNKKDLDADRE------------------VTFLEASRFAQE----------NELMFLETSALTGENVEEAFVQCARK 170 (186)
T ss_dssp EEEEECGGGGGGCC------------------SCHHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEECcccccccc------------------cCHHHHHHHHHH----------cCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 99999999965443 456677777655 44678899999999999999999999
Q ss_pred HHHh
Q psy14891 348 VIKI 351 (359)
Q Consensus 348 Il~~ 351 (359)
++++
T Consensus 171 ~~~~ 174 (186)
T 2bme_A 171 ILNK 174 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 17
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.86 E-value=1.4e-21 Score=170.22 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=91.5
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+++|||+|++.++..|..|+++++++|+|+|+++- ...+ ....+.+...|+..+ .....++|++||+||+|
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~--~~~~--~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~D 146 (198)
T 3t1o_A 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPN--RLRA--NAESMRNMRENLAEY--GLTLDDVPIVIQVNKRD 146 (198)
T ss_dssp EEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGG--GHHH--HHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTT
T ss_pred ceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcc--hhhH--hHHHHHHHHHHHHhh--ccccCCCCEEEEEEchh
Confidence 47899999999999999999999999999999999940 0000 123444444455444 23446899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCchHHHHHHHHHHHHHHhhh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSNVQTVFHAVMDLVIKINL 353 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni~~vf~~v~~~Il~~~l 353 (359)
+..+ ...+++.+++.. ..+ .+++|||++++||+++|+.+.+.++++.-
T Consensus 147 l~~~--------------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 147 LPDA--------------------LPVEMVRAVVDP----------EGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp STTC--------------------CCHHHHHHHHCT----------TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred cccc--------------------cCHHHHHHHHHh----------cCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 8542 345666666543 345 67899999999999999999999987643
No 18
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.86 E-value=2e-21 Score=167.75 Aligned_cols=126 Identities=14% Similarity=0.142 Sum_probs=88.3
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+++||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...++|+
T Consensus 48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~pi 116 (183)
T 2fu5_C 48 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN----------EKSFDNIRNWIRNIEEH-ASADVEK 116 (183)
T ss_dssp EEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-SCTTCEE
T ss_pred EEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCCE
Confidence 3445555 789999999999999999999999999999999998 66777777777777553 2357899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+|++||+|+..++. ...+++.++... ..+.+++|||+++.||.++|..+.+.
T Consensus 117 ilv~nK~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~ 168 (183)
T 2fu5_C 117 MILGNKCDVNDKRQ------------------VSKERGEKLALD----------YGIKFMETSAKANINVENAFFTLARD 168 (183)
T ss_dssp EEEEEC--CCSCCC------------------SCHHHHHHHHHH----------HTCEEEECCC---CCHHHHHHHHHHH
T ss_pred EEEEECccCCccCc------------------CCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999876443 456777777655 23678899999999999999999999
Q ss_pred HHHhhhh
Q psy14891 348 VIKINLQ 354 (359)
Q Consensus 348 Il~~~l~ 354 (359)
+.++.-+
T Consensus 169 i~~~~~~ 175 (183)
T 2fu5_C 169 IKAKMDK 175 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9876543
No 19
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.86 E-value=2.8e-21 Score=169.30 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=99.7
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+..+++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+......
T Consensus 59 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~l~~~~~~~~~ 128 (192)
T 2b6h_A 59 PTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVQESADELQKMLQEDEL 128 (192)
T ss_dssp EETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGG
T ss_pred CcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHhccccc
Confidence 57777667777888999999999999999999999999999999999998 77888888999998876666
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|++|++||+|+..+ . +.++..+.+.. .....+.+.+++|||+++.||+++|+
T Consensus 129 ~~~piilv~NK~Dl~~~-~-------------------~~~~i~~~~~~-----~~~~~~~~~~~~~SA~~g~gi~~l~~ 183 (192)
T 2b6h_A 129 RDAVLLVFANKQDMPNA-M-------------------PVSELTDKLGL-----QHLRSRTWYVQATCATQGTGLYDGLD 183 (192)
T ss_dssp TTCEEEEEEECTTSTTC-C-------------------CHHHHHHHTTG-----GGCSSCCEEEEECBTTTTBTHHHHHH
T ss_pred CCCeEEEEEECCCCCCC-C-------------------CHHHHHHHhCc-----ccccCCceEEEECcCCCcCCHHHHHH
Confidence 78999999999998542 1 12222221111 11112457789999999999999999
Q ss_pred HHHHHHH
Q psy14891 343 AVMDLVI 349 (359)
Q Consensus 343 ~v~~~Il 349 (359)
.+.+.+.
T Consensus 184 ~l~~~i~ 190 (192)
T 2b6h_A 184 WLSHELS 190 (192)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9987764
No 20
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=8.2e-21 Score=164.95 Aligned_cols=132 Identities=18% Similarity=0.220 Sum_probs=101.4
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+.++++.+++|||+|+++++..|..|+++++++|+|+|+++ ..++.+...++..+......
T Consensus 46 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 115 (187)
T 1zj6_A 46 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHEDL 115 (187)
T ss_dssp CCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTSGGG
T ss_pred CCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhchhh
Confidence 56666666677788999999999999999999999999999999999998 77899999999999876555
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|++|++||+|+..+ .+.+++.+++... .-....+.+++|||++++||+++|+
T Consensus 116 ~~~piilv~NK~Dl~~~--------------------~~~~~i~~~~~~~-----~~~~~~~~~~~~Sa~~g~gi~~l~~ 170 (187)
T 1zj6_A 116 RKAGLLIFANKQDVKEC--------------------MTVAEISQFLKLT-----SIKDHQWHIQACCALTGEGLCQGLE 170 (187)
T ss_dssp TTCEEEEEEECTTSTTC--------------------CCHHHHHHHHTGG-----GCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred CCCeEEEEEECCCCcCC--------------------CCHHHHHHHhChh-----hhcCCCcEEEEccCCCCcCHHHHHH
Confidence 78999999999998642 2234443333211 0112457789999999999999999
Q ss_pred HHHHHHH
Q psy14891 343 AVMDLVI 349 (359)
Q Consensus 343 ~v~~~Il 349 (359)
.+.+.+.
T Consensus 171 ~l~~~~~ 177 (187)
T 1zj6_A 171 WMMSRLK 177 (187)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9988764
No 21
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.86 E-value=1.9e-21 Score=166.90 Aligned_cols=128 Identities=19% Similarity=0.221 Sum_probs=97.6
Q ss_pred eEEEEeeCC---ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc-CCC
Q psy14891 188 IETNFRLGE---SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR-YFR 263 (359)
Q Consensus 188 ~~~~~~~~~---~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~-~~~ 263 (359)
....+.+.+ +.+++|||+|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.... ...
T Consensus 44 ~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~ 113 (178)
T 2hxs_A 44 FLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITN----------YQSFENLEDWYTVVKKVSEESE 113 (178)
T ss_dssp EEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcccC
Confidence 334455544 789999999999999999999999999999999998 556665556655554321 112
Q ss_pred CCe-EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 264 EAS-FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 264 ~~~-iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
+.| ++|++||+|+..++. ...+++..+... ..+.+++|||+++.||.++|+
T Consensus 114 ~~~~iilv~nK~Dl~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~ 165 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHMRT------------------IKPEKHLRFCQE----------NGFSSHFVSAKTGDSVFLCFQ 165 (178)
T ss_dssp CCCEEEEEEECGGGGGGCS------------------SCHHHHHHHHHH----------HTCEEEEECTTTCTTHHHHHH
T ss_pred CCCeEEEEEEccccccccc------------------cCHHHHHHHHHH----------cCCcEEEEeCCCCCCHHHHHH
Confidence 344 899999999976543 456677777654 236778999999999999999
Q ss_pred HHHHHHHHhhh
Q psy14891 343 AVMDLVIKINL 353 (359)
Q Consensus 343 ~v~~~Il~~~l 353 (359)
.+.+.+++..+
T Consensus 166 ~l~~~~~~~~~ 176 (178)
T 2hxs_A 166 KVAAEILGIKL 176 (178)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHHhhhh
Confidence 99998876654
No 22
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=7.6e-21 Score=163.99 Aligned_cols=135 Identities=17% Similarity=0.245 Sum_probs=102.9
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+.+++..+.+||++|+++++..|..++++++++|+|+|+++ ..++.+...++..+......
T Consensus 48 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 117 (183)
T 1moz_A 48 PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLMLQEEEL 117 (183)
T ss_dssp SSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTC----------TTTHHHHHHHHHHHTTSSTT
T ss_pred CcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHcChhh
Confidence 56666666677788999999999999999999999999999999999998 78889999999998876556
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|+++++||+|+..+ .+.++..+++. ......+.+.+++|||++++||+++|+
T Consensus 118 ~~~piilv~nK~Dl~~~--------------------~~~~~i~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 172 (183)
T 1moz_A 118 QDAALLVFANKQDQPGA--------------------LSASEVSKELN-----LVELKDRSWSIVASSAIKGEGITEGLD 172 (183)
T ss_dssp SSCEEEEEEECTTSTTC--------------------CCHHHHHHHTT-----TTTCCSSCEEEEEEBGGGTBTHHHHHH
T ss_pred CCCeEEEEEECCCCCCC--------------------CCHHHHHHHhC-----cccccCCceEEEEccCCCCcCHHHHHH
Confidence 78999999999998642 12233333221 111112456789999999999999999
Q ss_pred HHHHHHHHhh
Q psy14891 343 AVMDLVIKIN 352 (359)
Q Consensus 343 ~v~~~Il~~~ 352 (359)
.+.+.+.++.
T Consensus 173 ~l~~~~~~~q 182 (183)
T 1moz_A 173 WLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999887653
No 23
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.86 E-value=1.1e-20 Score=163.74 Aligned_cols=134 Identities=17% Similarity=0.223 Sum_probs=106.9
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+.+++..+++|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..+......
T Consensus 48 ~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 117 (186)
T 1ksh_A 48 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSLLVEERL 117 (186)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGG
T ss_pred ccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhChhc
Confidence 56666667777788999999999999999999999999999999999998 78889989999999877666
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|+++++||+|+..+. +.++..+++. ........+.+++|||+++.||+++|+
T Consensus 118 ~~~piilv~nK~Dl~~~~--------------------~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 172 (186)
T 1ksh_A 118 AGATLLIFANKQDLPGAL--------------------SCNAIQEALE-----LDSIRSHHWRIQGCSAVTGEDLLPGID 172 (186)
T ss_dssp TTCEEEEEEECTTSTTCC--------------------CHHHHHHHTT-----GGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred CCCcEEEEEeCccCCCCC--------------------CHHHHHHHhC-----hhhccCCceEEEEeeCCCCCCHHHHHH
Confidence 789999999999986531 2233222221 111113567889999999999999999
Q ss_pred HHHHHHHHh
Q psy14891 343 AVMDLVIKI 351 (359)
Q Consensus 343 ~v~~~Il~~ 351 (359)
.+.+.+.++
T Consensus 173 ~l~~~i~~~ 181 (186)
T 1ksh_A 173 WLLDDISSR 181 (186)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 999887654
No 24
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.86 E-value=5.2e-21 Score=162.21 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=93.9
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... .+.|+++++||+|+
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl 121 (168)
T 1z2a_A 54 VRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD----------RESFEAISSWREKVVAEV--GDIPTALVQNKIDL 121 (168)
T ss_dssp EEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGG
T ss_pred EEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC--CCCCEEEEEECccc
Confidence 689999999999999999999999999999999998 566666667777765543 57899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
..++. ...+++.++... ..+.++++||+++.||+++|+.+.+.+++
T Consensus 122 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 122 LDDSC------------------IKNEEAEGLAKR----------LKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp GGGCS------------------SCHHHHHHHHHH----------HTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred Ccccc------------------cCHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 76443 456666666654 23567899999999999999999988764
No 25
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.86 E-value=5.9e-21 Score=166.91 Aligned_cols=134 Identities=15% Similarity=0.232 Sum_probs=101.7
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|.....+.++++.+++|||+|++.++..|..|+++++++|+|+|+++ ..++.+...++..+......
T Consensus 53 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 122 (190)
T 1m2o_B 53 PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD----------PERFDEARVELDALFNIAEL 122 (190)
T ss_dssp CCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGG
T ss_pred cCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------hHHHHHHHHHHHHHHcchhh
Confidence 45555556777888999999999999999999999999999999999998 78899999999999876555
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhh-hc-cCCCCceEEEEeeccCCchHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFAL-RN-HNSAKVIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~-~~-~~~~~~i~~~~tsA~d~~ni~~v 340 (359)
.+.|++|++||+|+.. .. +.+++.+++...... .. -...+.+.+++|||++++||.++
T Consensus 123 ~~~piilv~NK~Dl~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 182 (190)
T 1m2o_B 123 KDVPFVILGNKIDAPN-AV-------------------SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEA 182 (190)
T ss_dssp TTCCEEEEEECTTSTT-CC-------------------CHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHH
T ss_pred cCCCEEEEEECCCCcC-CC-------------------CHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHH
Confidence 7899999999999864 22 233333222110000 00 01124577899999999999999
Q ss_pred HHHHHH
Q psy14891 341 FHAVMD 346 (359)
Q Consensus 341 f~~v~~ 346 (359)
|+.+.+
T Consensus 183 ~~~l~~ 188 (190)
T 1m2o_B 183 FQWLSQ 188 (190)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998865
No 26
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.86 E-value=4.7e-21 Score=162.33 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=96.5
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.......+.|+++++||+|
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 119 (167)
T 1c1y_A 50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITA----------QSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119 (167)
T ss_dssp EEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTT
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcc
Confidence 4689999999999999999999999999999999998 677777777777776654456899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
+..++. ...+++.++... ...+.++++||+++.||+++|+.+.+.+.
T Consensus 120 l~~~~~------------------~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 120 LEDERV------------------VGKEQGQNLARQ---------WCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp CGGGCC------------------SCHHHHHHHHHH---------TTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred cccccc------------------CCHHHHHHHHHH---------ccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 976544 456677776554 12467889999999999999999988763
No 27
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.86 E-value=1.1e-20 Score=164.75 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=100.5
Q ss_pred EEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEE
Q psy14891 191 NFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFI 268 (359)
Q Consensus 191 ~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ii 268 (359)
.+.+++ +.+++||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+... ...+.|++
T Consensus 62 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~l~~i~~~-~~~~~pii 130 (191)
T 2a5j_A 62 MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQH-SSSNMVIM 130 (191)
T ss_dssp EEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEE
T ss_pred EEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCCEE
Confidence 344443 689999999999999999999999999999999998 66777777777777553 23578999
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
|++||+|+..++. ...+++.+|+.. ..+.+++|||+++.||+++|+.+.+.+
T Consensus 131 lv~nK~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 131 LIGNKSDLESRRD------------------VKREEGEAFARE----------HGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp EEEECTTCGGGCC------------------SCHHHHHHHHHH----------HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEECcccCCccc------------------cCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999976443 456677777655 335778999999999999999999999
Q ss_pred HHhhh
Q psy14891 349 IKINL 353 (359)
Q Consensus 349 l~~~l 353 (359)
+++.-
T Consensus 183 ~~~~~ 187 (191)
T 2a5j_A 183 YRKIQ 187 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87643
No 28
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.86 E-value=1.2e-20 Score=162.67 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=98.3
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.......++|++|++||+|+
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTS----------IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 678999999999999999999999999999999998 7788888888888876555568999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
..++. ...+++..++.. ..+.++++||+++.||.++|+.+.+.+.+.+
T Consensus 124 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 124 HMERV------------------ISYEEGKALAES----------WNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp TTTCC------------------SCHHHHHHHHHH----------TTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred hhcce------------------ecHHHHHHHHHH----------hCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 76544 567778777765 3467889999999999999999999887643
No 29
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.3e-20 Score=160.08 Aligned_cols=129 Identities=17% Similarity=0.220 Sum_probs=104.0
Q ss_pred eeEEEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCC
Q psy14891 187 IIETNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFRE 264 (359)
Q Consensus 187 ~~~~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~ 264 (359)
+....+.+.+ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ..+
T Consensus 46 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~ 113 (181)
T 3tw8_B 46 FKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS----------AESFVNVKRWLHEINQN--CDD 113 (181)
T ss_dssp EEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH--CTT
T ss_pred EEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCC
Confidence 3344555555 789999999999999999999999999999999998 67777777777777553 358
Q ss_pred CeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHH
Q psy14891 265 ASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAV 344 (359)
Q Consensus 265 ~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v 344 (359)
.|++||+||+|+..++. ...+++..+... ..+.+++|||+++.||.++|+.+
T Consensus 114 ~p~ilv~nK~Dl~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 114 VCRILVGNKNDDPERKV------------------VETEDAYKFAGQ----------MGIQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp SEEEEEEECTTCGGGCC------------------SCHHHHHHHHHH----------HTCCEEECBTTTTBSHHHHHHHH
T ss_pred CCEEEEEECCCCchhcc------------------cCHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999877654 556667776665 23567899999999999999999
Q ss_pred HHHHHHhhhhh
Q psy14891 345 MDLVIKINLQQ 355 (359)
Q Consensus 345 ~~~Il~~~l~~ 355 (359)
.+.+.+..-+.
T Consensus 166 ~~~~~~~~~~~ 176 (181)
T 3tw8_B 166 TELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 99998765443
No 30
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=8e-21 Score=167.21 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=98.2
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
..+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.......++|++||+||+
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 139 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTS----------LHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTC----------HHHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 35788999999999999999999999999999999998 77888888888888766555688999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
|+..++. ...+++..+... ..+.+++|||+++.||+++|+.+.+.+.+..
T Consensus 140 Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 140 DLSPERE------------------VQAVEGKKLAES----------WGATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp TCGGGCC------------------SCHHHHHHHHHH----------HTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred cCccccc------------------cCHHHHHHHHHH----------hCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9976554 566777777665 3356789999999999999999999988654
No 31
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.86 E-value=1.3e-20 Score=161.74 Aligned_cols=120 Identities=16% Similarity=0.203 Sum_probs=86.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc---CCCCCeEEEEeeC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR---YFREASFILFLNK 273 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~---~~~~~~iiL~~NK 273 (359)
..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ...+.|++|++||
T Consensus 58 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 58 ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTN----------ASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp EEEEEECCC----------CCSTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred EEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCC----------hHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 688999999999999999999999999999999998 566666666666665432 2367899999999
Q ss_pred CCcchhh-hhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 274 FDLFREK-ILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 274 ~Dl~~~k-~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
+|+.... . ...+++.++... ...+.+++|||+++.||+++|+.+.+.+++++
T Consensus 128 ~Dl~~~~~~------------------v~~~~~~~~~~~---------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 128 IDAEESKKI------------------VSEKSAQELAKS---------LGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp TTSCGGGCC------------------SCHHHHHHHHHH---------TTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred Ccccccccc------------------CCHHHHHHHHHh---------cCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 9985432 2 355667666553 13456789999999999999999999998765
Q ss_pred h
Q psy14891 353 L 353 (359)
Q Consensus 353 l 353 (359)
.
T Consensus 181 ~ 181 (182)
T 1ky3_A 181 Q 181 (182)
T ss_dssp C
T ss_pred c
Confidence 3
No 32
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=164.56 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=105.8
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
+|+|+....+.+++..+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..+......
T Consensus 53 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 122 (190)
T 2h57_A 53 PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD----------RLRMVVAKEELDTLLNHPDI 122 (190)
T ss_dssp CCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTC----------HHHHHHHHHHHHHHHHSTTT
T ss_pred CccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChhh
Confidence 56777777788888999999999999999999999999999999999998 77888888999998876555
Q ss_pred --CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHH
Q psy14891 263 --REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 263 --~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~v 340 (359)
.+.|++||+||+|+..+ .+.++..+++.. ..-..+.+.+++|||+++.||.++
T Consensus 123 ~~~~~piilv~nK~Dl~~~--------------------~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l 177 (190)
T 2h57_A 123 KHRRIPILFFANKMDLRDA--------------------VTSVKVSQLLCL-----ENIKDKPWHICASDAIKGEGLQEG 177 (190)
T ss_dssp TTSCCCEEEEEECTTSTTC--------------------CCHHHHHHHHTG-----GGCCSSCEEEEECBTTTTBTHHHH
T ss_pred ccCCCeEEEEEeCcCcccC--------------------CCHHHHHHHhCh-----hhccCCceEEEEccCCCCcCHHHH
Confidence 68999999999998642 234444444321 111124577899999999999999
Q ss_pred HHHHHHHH
Q psy14891 341 FHAVMDLV 348 (359)
Q Consensus 341 f~~v~~~I 348 (359)
|+.+.+.+
T Consensus 178 ~~~l~~~i 185 (190)
T 2h57_A 178 VDWLQDQI 185 (190)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998765
No 33
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.86 E-value=1.6e-20 Score=159.22 Aligned_cols=117 Identities=22% Similarity=0.153 Sum_probs=83.2
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..|+++++++++|+|+++ ..++.+...|+..+.......++|++|++||+|+
T Consensus 49 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 118 (166)
T 3q72_A 49 ASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTD----------KGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118 (166)
T ss_dssp EEEEEEECC---------------CCEEEEEEETTC----------HHHHHHHHHHHHHHHHCC---CCCEEEEEECTTC
T ss_pred EEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccc
Confidence 678899999999999999999999999999999998 7788888888888887655678999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
..++. ...+.+..+... ..+.+++|||+++.||+++|+.+.+.+..+
T Consensus 119 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 119 VRSRE------------------VSVDEGRACAVV----------FDCKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp CSSCC------------------SCHHHHHHHHHH----------TTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred ccccc------------------cCHHHHHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 76543 456666666554 346788999999999999999999988654
No 34
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.86 E-value=1.5e-20 Score=165.14 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=100.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.......+.|++|++||+|+
T Consensus 62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence 589999999999999999999999999999999998 6778888888888876544458999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
..++. ...+++.+++.. ..+.++++||+++.||.++|+.+.+.+....
T Consensus 132 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 132 EDKRQ------------------VSVEEAKNRAEQ----------WNVNYVETSAKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp GGGCC------------------SCHHHHHHHHHH----------HTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccccc------------------ccHHHHHHHHHH----------hCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence 76543 456777777765 2356889999999999999999999998754
No 35
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.86 E-value=1.2e-20 Score=163.57 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=99.1
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.......+.|++|++||+|+
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTN----------EQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL 139 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTC
T ss_pred EEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 579999999999999999999999999999999998 6777777788888776554468999999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhhh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINL 353 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l 353 (359)
..++. ...+++.+++.. ..+.+++|||+++.||+++|+.+.+.+.++.-
T Consensus 140 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 140 EDQRA------------------VKEEEARELAEK----------YGIPYFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp GGGCC------------------SCHHHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred ccccc------------------cCHHHHHHHHHH----------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 76543 455667666654 23567899999999999999999999987643
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.86 E-value=1.2e-20 Score=162.86 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=100.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.......+.|++|++||+|+
T Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 135 (187)
T 2a9k_A 66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSDL 135 (187)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGG
T ss_pred EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 689999999999999999999999999999999998 6777888888888876544458999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhhh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINL 353 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l 353 (359)
..++. ...+++.+++.. ..+.++++||+++.||.++|+.+.+.+.++..
T Consensus 136 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 184 (187)
T 2a9k_A 136 EDKRQ------------------VSVEEAKNRAEQ----------WNVNYVETSAKTRANVDKVFFDLMREIRARKM 184 (187)
T ss_dssp GGGCC------------------SCHHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cccCc------------------cCHHHHHHHHHH----------cCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 76543 456777777765 34678899999999999999999999987654
No 37
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.86 E-value=1.5e-20 Score=164.01 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=97.7
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+.+|||+|+++++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|++|++||+|
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~----------~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~D 141 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK----------HQTYAVVERWLKELYDH-AEATIVVMLVGNKSD 141 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGG
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCC
Confidence 3789999999999999999999999999999999998 66677677777777653 235789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
+..++. ...+++..++.. ..+.+++|||+++.||+++|+.+.+.++++.
T Consensus 142 l~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 142 LSQARE------------------VPTEEARMFAEN----------NGLLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp GGGGCC------------------SCHHHHHHHHHH----------TTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccccc------------------cCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 976433 456677777654 3467889999999999999999999988754
No 38
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.86 E-value=9.6e-21 Score=163.80 Aligned_cols=130 Identities=18% Similarity=0.225 Sum_probs=102.6
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
+|+|+....+.+++..+.+||++|+++++..|..|+++++++|+|+|+++ ..++.+...++..+......
T Consensus 51 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~~ 120 (181)
T 2h17_A 51 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHEDL 120 (181)
T ss_dssp CCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTCGGG
T ss_pred CcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChhh
Confidence 56666666677788999999999999999999999999999999999998 77889999999999876556
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|++|++||+|+..+ .+.++..+++.. .......+.+++|||+++.||+++|+
T Consensus 121 ~~~piilv~NK~Dl~~~--------------------~~~~~i~~~~~~-----~~~~~~~~~~~~~Sa~~g~gi~~l~~ 175 (181)
T 2h17_A 121 RKAGLLIFANKQDVKEC--------------------MTVAEISQFLKL-----TSIKDHQWHIQACCALTGEGLCQGLE 175 (181)
T ss_dssp TTCEEEEEEECTTSTTC--------------------CCHHHHHHHTTG-----GGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred CCCeEEEEEECCCcccC--------------------CCHHHHHHHhCc-----ccccCCceEEEEccCCCCcCHHHHHH
Confidence 78999999999998642 123333333221 11112457789999999999999999
Q ss_pred HHHHH
Q psy14891 343 AVMDL 347 (359)
Q Consensus 343 ~v~~~ 347 (359)
.+.+.
T Consensus 176 ~l~~~ 180 (181)
T 2h17_A 176 WMMSR 180 (181)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 88653
No 39
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.85 E-value=8.4e-21 Score=160.50 Aligned_cols=116 Identities=19% Similarity=0.224 Sum_probs=95.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.......+.|+++++||+|+
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 121 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDENVPFLLVGNKSDL 121 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccc
Confidence 689999999999999999999999999999999998 6777888888888876554568999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
..++. ...+++.+++.. ..+.++++||+++.||.++|+.+.+.+.+
T Consensus 122 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 122 EDKRQ------------------VSVEEAKNRADQ----------WNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp GGGCC------------------SCHHHHHHHHHH----------HTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cccCc------------------cCHHHHHHHHHH----------cCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 76443 456777777765 23567899999999999999999988763
No 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.1e-20 Score=162.42 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=85.9
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..+.|++|++||+|+
T Consensus 60 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl 128 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN----------KASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDS 128 (180)
T ss_dssp EEEEEEECCCC--------CCGGGCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCST
T ss_pred EEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCCCcEEEEEECccc
Confidence 689999999999999999999999999999999998 566666666666665432 267899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhhh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINL 353 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l 353 (359)
..++. ...+++.++... ..+.+++|||+++.||+++|+.+.+.+.+.+.
T Consensus 129 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 129 AHERV------------------VKREDGEKLAKE----------YGLPFMETSAKTGLNVDLAFTAIAKELKRRSM 177 (180)
T ss_dssp TSCCC------------------SCHHHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHHHC---
T ss_pred Ccccc------------------cCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 76443 455666666554 23567899999999999999999998876543
No 41
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.2e-20 Score=164.30 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=96.9
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.......+.|++|++||+|
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D 132 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR----------RDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 132 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTT
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCc
Confidence 3789999999999999999999999999999999998 667777777777776654446899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+.... ...+++.+++.. ..+.+++|||+++.||+++|+.+.+.+.+.
T Consensus 133 l~~~~-------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (195)
T 1x3s_A 133 KENRE-------------------VDRNEGLKFARK----------HSMLFIEASAKTCDGVQCAFEELVEKIIQT 179 (195)
T ss_dssp SSSCC-------------------SCHHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred Ccccc-------------------cCHHHHHHHHHH----------cCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 84322 345667777665 346788999999999999999999988753
No 42
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.85 E-value=1.2e-20 Score=161.56 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=94.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|++|++||+|+
T Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl 132 (179)
T 1z0f_A 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARNL-TNPNTVIILIGNKADL 132 (179)
T ss_dssp EEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTC
T ss_pred EEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC----------HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccc
Confidence 689999999999999999999999999999999998 56666666666666543 2357899999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
..++. ...+++.+++.. ..+.++++||+++.||.++|+.+.+.+++
T Consensus 133 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 133 EAQRD------------------VTYEEAKQFAEE----------NGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp GGGCC------------------SCHHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred ccccc------------------cCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 76443 456777777765 34678999999999999999999888754
No 43
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.7e-20 Score=165.93 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=97.6
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+++|||+|+++++..|..|+++++++|+|+|+++ ..++.....|+..+... ...+.|+
T Consensus 66 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~i~~~-~~~~~pi 134 (201)
T 2ew1_A 66 KTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIEQY-ASNKVIT 134 (201)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred EEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCCE
Confidence 3444544 689999999999999999999999999999999998 56666666666666443 2357899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+||+||+|+..++. ...+++..|... ..+.+++|||+++.||.++|..+.+.
T Consensus 135 ilv~NK~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~g~gv~~l~~~l~~~ 186 (201)
T 2ew1_A 135 VLVGNKIDLAERRE------------------VSQQRAEEFSEA----------QDMYYLETSAKESDNVEKLFLDLACR 186 (201)
T ss_dssp EEEEECGGGGGGCS------------------SCHHHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEECCCCccccc------------------cCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999875433 456667666654 23567899999999999999999999
Q ss_pred HHHh
Q psy14891 348 VIKI 351 (359)
Q Consensus 348 Il~~ 351 (359)
++++
T Consensus 187 i~~~ 190 (201)
T 2ew1_A 187 LISE 190 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 44
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=165.41 Aligned_cols=117 Identities=16% Similarity=0.140 Sum_probs=96.3
Q ss_pred ceeeEEecCCcccccc-chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRR-KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~-~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+.+||++|++.++. +|..|+++++++|+|+|+++ ..++.+...|+..+.......++|++|++||+|
T Consensus 72 ~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 141 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTD----------RRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 141 (195)
T ss_dssp EEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred EEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEeechh
Confidence 6788999999998875 88899999999999999998 777777788888876644345799999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+..++. .+.+++..+... ..+.+++|||+++.||+++|+.+.+.+...
T Consensus 142 l~~~~~------------------v~~~~~~~~a~~----------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 142 LARSRE------------------VSLEEGRHLAGT----------LSCKHIETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp CTTTCC------------------SCHHHHHHHHHH----------TTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred ccccCC------------------cCHHHHHHHHHH----------hCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 976543 456777777654 235678999999999999999999988654
No 45
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.85 E-value=9.6e-21 Score=164.93 Aligned_cols=132 Identities=17% Similarity=0.243 Sum_probs=102.5
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|.....+..+++.+.+||++|++.++..|..|+++++++|||+|+++ ..++.....++..+......
T Consensus 53 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~~ 122 (188)
T 1zd9_A 53 PTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD----------QEKIEASKNELHNLLDKPQL 122 (188)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGG
T ss_pred CCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCccc
Confidence 46666656667778999999999999999999999999999999999998 78888889999999876555
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|++|++||+|+..+ . +.++..+.+. ........+.+++|||+++.||.++|+
T Consensus 123 ~~~piilv~NK~Dl~~~-~-------------------~~~~~~~~~~-----~~~~~~~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 123 QGIPVLVLGNKRDLPGA-L-------------------DEKELIEKMN-----LSAIQDREICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp TTCCEEEEEECTTSTTC-C-------------------CHHHHHHHTT-----GGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred CCCCEEEEEECCCCccC-C-------------------CHHHHHHHhC-----hhhhccCCeeEEEEECCCCCCHHHHHH
Confidence 78999999999998642 1 1222221111 111112456788999999999999999
Q ss_pred HHHHHHH
Q psy14891 343 AVMDLVI 349 (359)
Q Consensus 343 ~v~~~Il 349 (359)
.+.+.+.
T Consensus 178 ~l~~~~~ 184 (188)
T 1zd9_A 178 WLIQHSK 184 (188)
T ss_dssp HHHHTCC
T ss_pred HHHHHHH
Confidence 9887654
No 46
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.85 E-value=3.6e-20 Score=161.48 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=101.4
Q ss_pred eEEEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCC
Q psy14891 188 IETNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREA 265 (359)
Q Consensus 188 ~~~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~ 265 (359)
....+.+++ +.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+... ...+.
T Consensus 54 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~ 122 (196)
T 3tkl_A 54 KIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLQEIDRY-ASENV 122 (196)
T ss_dssp EEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTC
T ss_pred EEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCC
Confidence 334455555 789999999999999999999999999999999998 66677777776666543 33578
Q ss_pred eEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 266 SFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 266 ~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
|++|++||+|+..++. ...+.+..+... ..+.+++|||+++.||.++|+.+.
T Consensus 123 p~ilv~nK~Dl~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 123 NKLLVGNKCDLTTKKV------------------VDYTTAKEFADS----------LGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp EEEEEEECTTCTTTCC------------------SCHHHHHHHHHH----------TTCCEEEECTTTCTTHHHHHHHHH
T ss_pred CEEEEEECcccccccc------------------cCHHHHHHHHHH----------cCCcEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999976554 456666666655 346688999999999999999999
Q ss_pred HHHHHhh
Q psy14891 346 DLVIKIN 352 (359)
Q Consensus 346 ~~Il~~~ 352 (359)
+.+.+..
T Consensus 175 ~~i~~~~ 181 (196)
T 3tkl_A 175 AEIKKRM 181 (196)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9988754
No 47
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.85 E-value=2e-20 Score=161.54 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=97.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++.++..|..|+++++++|+|+|+++ ..++.....|+..+.......++|++|++||+|+
T Consensus 66 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 66 AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD----------KASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp EEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 567889999999999999999999999999999998 6777777778777766545568899999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeecc-CCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTAT-DTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~-d~~ni~~vf~~v~~~Il~ 350 (359)
..++. ...+++.++... ..+.+++|||+ ++.||.++|+.+.+.+.+
T Consensus 136 ~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 136 MHLRK------------------VTRDQGKEMATK----------YNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp STTCC------------------SCHHHHHHHHHH----------HTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred hhccC------------------cCHHHHHHHHHH----------hCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 76544 566777777765 23567899999 999999999999998865
No 48
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.85 E-value=1.2e-20 Score=168.31 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=95.5
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+++ .|+..+... ..++|++||+||+
T Consensus 74 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 141 (214)
T 3q3j_B 74 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR----------PETVDSALKKWRTEILDY--CPSTRVLLIGCKT 141 (214)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------THHHHHHHTHHHHHHHHH--CTTSEEEEEEECG
T ss_pred EEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence 4789999999999999999999999999999999998 77787754 444444332 3589999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCch-HHHHHHHHHHHHHHh
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSN-VQTVFHAVMDLVIKI 351 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~n-i~~vf~~v~~~Il~~ 351 (359)
|+..+.. ....+ .+........+++..++.. ..+ .+++|||+++.| |+++|+.+.+.++..
T Consensus 142 Dl~~~~~--~~~~~----~~~~~~~v~~~~~~~~~~~----------~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 142 DLRTDLS--TLMEL----SHQKQAPISYEQGCAIAKQ----------LGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp GGGGCHH--HHHHH----HHTTCCCCCHHHHHHHHHH----------HTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred hhccchh--hhhhh----cccccCccCHHHHHHHHHH----------cCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 9976421 00000 0000011567778888776 335 678999999998 999999999988754
No 49
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=1.9e-20 Score=159.19 Aligned_cols=114 Identities=14% Similarity=0.188 Sum_probs=86.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|+++++||+|+
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl 123 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD----------EDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDL 123 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGG
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCeEEEEEECccc
Confidence 689999999999999999999999999999999998 56666666666665432 2247899999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
..++. .+.+++.+++.. ..+.++++||+++.||+++|+.+.+.++
T Consensus 124 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 124 EKERH------------------VSIQEAESYAES----------VGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp GGGCC------------------SCHHHHHHHHHH----------TTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ccccc------------------cCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 76543 456777777665 3466789999999999999999998875
No 50
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.85 E-value=3.7e-20 Score=158.86 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=98.9
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.......+.|++|++||+|+
T Consensus 57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIND----------RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 678999999999999999999999999999999998 6778888888888876555568999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
..++. ...+++..+... ..+.+++|||+++.||.++|+.+.+.+.+..
T Consensus 127 ~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 127 ESQRQ------------------VPRSEASAFGAS----------HHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp GGGCC------------------SCHHHHHHHHHH----------TTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred ccccc------------------cCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 76443 445666666554 3467889999999999999999999887653
No 51
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.85 E-value=6.4e-20 Score=161.77 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=99.1
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.....|+..+.... ..+.|+
T Consensus 48 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~pi 116 (206)
T 2bcg_Y 48 KTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD----------QESFNGVKMWLQEIDRYA-TSTVLK 116 (206)
T ss_dssp EEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEE
T ss_pred EEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhc-CCCCCE
Confidence 3444444 689999999999999999999999999999999998 667777777777665432 357899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+|++||+|+..++. ...+.+..+... ..+.+++|||+++.||.++|..+.+.
T Consensus 117 ilv~nK~Dl~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~ 168 (206)
T 2bcg_Y 117 LLVGNKCDLKDKRV------------------VEYDVAKEFADA----------NKMPFLETSALDSTNVEDAFLTMARQ 168 (206)
T ss_dssp EEEEECTTCTTTCC------------------SCHHHHHHHHHH----------TTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEECCCCccccc------------------cCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999976543 456667776654 34567899999999999999999999
Q ss_pred HHHh
Q psy14891 348 VIKI 351 (359)
Q Consensus 348 Il~~ 351 (359)
+.+.
T Consensus 169 i~~~ 172 (206)
T 2bcg_Y 169 IKES 172 (206)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 52
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=7.7e-21 Score=165.83 Aligned_cols=118 Identities=15% Similarity=0.220 Sum_probs=97.6
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
..+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+.. ....++|++||+||+
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~-~~~~~~piilv~nK~ 138 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWATQIKT-YSWDNAQVILVGNKC 138 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHH-HSCTTCEEEEEEECT
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcC----------HHHHHHHHHHHHHHHH-hcCCCCCEEEEEECC
Confidence 45789999999999999999999999999999999998 6666666666666644 334689999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
|+..++. ...+++..+... ..+.+++|||+++.||.++|+.+.+.+.++
T Consensus 139 Dl~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 139 DMEEERV------------------VPTEKGQLLAEQ----------LGFDFFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TCGGGCC------------------SCHHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CCccccc------------------cCHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 9977655 566677776665 345788999999999999999999998865
No 53
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.85 E-value=3.4e-20 Score=161.32 Aligned_cols=123 Identities=20% Similarity=0.170 Sum_probs=96.8
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+++|||+|++.++ |+++++++|+|||+++ ..++.+...|+..+.......++|+
T Consensus 58 ~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pi 122 (184)
T 3ihw_A 58 KEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLED----------EISFQTVYNYFLRLCSFRNASEVPM 122 (184)
T ss_dssp EEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHTTSCGGGSCE
T ss_pred EEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 3444444 678899999999887 8899999999999998 7888888888888876544467899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+|++||+|+..+.- . . .+.+++.+++.. ...+.+++|||+++.||+++|+.+.+.
T Consensus 123 ilv~nK~Dl~~~~~--~--~------------v~~~~~~~~~~~---------~~~~~~~e~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 123 VLVGTQDAISAANP--R--V------------IDDSRARKLSTD---------LKRCTYYETCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp EEEEECTTCBTTBC--C--C------------SCHHHHHHHHHH---------TTTCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred EEEEECcccccccc--c--c------------cCHHHHHHHHHH---------cCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 99999999853211 0 0 566777777765 123677899999999999999999999
Q ss_pred HHHhh
Q psy14891 348 VIKIN 352 (359)
Q Consensus 348 Il~~~ 352 (359)
+++..
T Consensus 178 i~~~~ 182 (184)
T 3ihw_A 178 VVALR 182 (184)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 88653
No 54
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.85 E-value=1.2e-20 Score=167.78 Aligned_cols=118 Identities=21% Similarity=0.242 Sum_probs=97.0
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+++|||+|+++++..|..++++++++|||+|+++ ..++.+...|+..+.......++|++||+||+|
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D 152 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS----------QQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD 152 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTC----------HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence 4679999999999999999999999999999999998 667777777777665544346899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+..++. ...+++.++... ..+.+++|||+++.||.++|+.+.+.+.++
T Consensus 153 l~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 153 LPDQRE------------------VNERQARELADK----------YGIPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp CGGGCC------------------SCHHHHHHHHHH----------TTCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cccccc------------------cCHHHHHHHHHH----------CCCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 976443 456667777654 345678999999999999999999998764
No 55
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.84 E-value=7.8e-20 Score=159.03 Aligned_cols=117 Identities=18% Similarity=0.229 Sum_probs=95.5
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...+.|++|++||+|
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D 138 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN----------QESFAAVQDWATQIKTY-SWDNAQVILVGNKCD 138 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTT
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcc
Confidence 3789999999999999999999999999999999998 56666666676666543 245789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+..++. ...+++.++... ..+.++++||+++.||+++|+.+.+.+.++
T Consensus 139 l~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 139 LEDERV------------------VPAEDGRRLADD----------LGFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp CGGGCC------------------SCHHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cccccC------------------CCHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 976543 455666666654 235688999999999999999999988754
No 56
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.84 E-value=2.5e-20 Score=158.07 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=94.6
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
++.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..+.|++|++||+|
T Consensus 54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D 122 (170)
T 1r2q_A 54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN----------EESFARAKNWVKELQRQA-SPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGG
T ss_pred EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcc
Confidence 4789999999999999999999999999999999998 677777777777776542 35899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
+..++. .+.+++.++... ..+.++++||+++.||+++|+.+.+.+
T Consensus 123 l~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 123 LANKRA------------------VDFQEAQSYADD----------NSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp GGGGCC------------------SCHHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred Cccccc------------------cCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 876543 456677777654 446788999999999999999987654
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.84 E-value=3e-20 Score=156.96 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=95.9
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
..+.+||++|++.++..|..++++++++++|+|+++ ..++.+...++..+.......+.|+++++||+|+
T Consensus 51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1kao_A 51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVN----------QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120 (167)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGG
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 568999999999999999999999999999999998 6778888888888876554568999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
..++. ...+++..+... ..+.++++||+++.||.++|+.+.+.+.+
T Consensus 121 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 121 ESERE------------------VSSSEGRALAEE----------WGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp GGGCC------------------SCHHHHHHHHHH----------HTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccc------------------CCHHHHHHHHHH----------hCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 65433 345666666554 23457889999999999999999887643
No 58
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.84 E-value=2.3e-20 Score=160.45 Aligned_cols=116 Identities=14% Similarity=0.189 Sum_probs=95.8
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..+.|++|++||+|
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D 128 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN----------QASFERAKKWVQELQAQG-NPNMVMALAGNKSD 128 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCc
Confidence 3689999999999999999999999999999999998 677777778887776543 35889999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
+..++. ...+++.+++.. ..+.++++||+++.||.++|+.+.+.+.+
T Consensus 129 l~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 129 LLDARK------------------VTAEDAQTYAQE----------NGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CTTTCC------------------SCHHHHHHHHHH----------TTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred cccccc------------------CCHHHHHHHHHH----------cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 865433 456777777665 34678899999999999999999887654
No 59
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.84 E-value=3.9e-20 Score=157.03 Aligned_cols=114 Identities=12% Similarity=0.040 Sum_probs=92.4
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
..+.+||++|+++++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|++|++||+|+
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl 123 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK----------EETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDL 123 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTC
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCcc
Confidence 789999999999999999999999999999999998 66666666676666543 3467899999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
..++. ...+.+..+... ..+.++++||+++.||+++|+.+.+.+.
T Consensus 124 ~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 124 TDVRE------------------VMERDAKDYADS----------IHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp GGGCC------------------SCHHHHHHHHHH----------TTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ccccc------------------cCHHHHHHHHHH----------cCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 76433 345666666554 3467889999999999999999887653
No 60
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.84 E-value=1.3e-21 Score=184.49 Aligned_cols=137 Identities=13% Similarity=0.146 Sum_probs=92.8
Q ss_pred cccceeEEEEeeCCceeeEEecCCcccccc---chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRR---KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~---~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~ 259 (359)
||+|+....+. ..++++|||||||++|++ .|.+||++++++|||+|+++ . +.+++.+|..++..
T Consensus 33 ~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd----------~--~~~~~~~l~~~l~~ 99 (331)
T 3r7w_B 33 STSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD----------E--YINAITNLAMIIEY 99 (331)
T ss_dssp CCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS----------C--TTHHHHHHHHHHHH
T ss_pred CeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc----------h--HHHHHHHHHHHHHH
Confidence 67776655542 348999999999999985 46899999999999999997 3 66677777665432
Q ss_pred --cCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 260 --RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 260 --~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
...+++|++|++||+|+..+.- +....+. ...+++.++++.. -....+.+|+|||+| .||
T Consensus 100 ~~~~~~~ipillvgNK~DL~~~~~--R~~~~R~---------V~~~~~~~la~~~------~~~~~i~f~eTSAkd-~nV 161 (331)
T 3r7w_B 100 AYKVNPSINIEVLIHKVDGLSEDF--KVDAQRD---------IMQRTGEELLELG------LDGVQVSFYLTSIFD-HSI 161 (331)
T ss_dssp HHHHCTTCEEEEECCCCCSSCSHH--HHHHHHH---------HHHHHHHTTSSSS------CSCCCEEEECCCSSS-SHH
T ss_pred HhhcCCCCcEEEEEECcccCchhh--hhhHHHH---------hhHHHHHHHHhhc------ccccCceEEEeccCC-CcH
Confidence 2245899999999999965311 0000000 1112222221110 002468899999998 599
Q ss_pred HHHHHHHHHHHHH
Q psy14891 338 QTVFHAVMDLVIK 350 (359)
Q Consensus 338 ~~vf~~v~~~Il~ 350 (359)
.++|..++..|+.
T Consensus 162 ~eAFs~iv~~li~ 174 (331)
T 3r7w_B 162 YEAFSRIVQKLIP 174 (331)
T ss_dssp HHHHHHHHTTSST
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
No 61
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=161.92 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=91.7
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc--CCCCCeEEEEeeC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR--YFREASFILFLNK 273 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~--~~~~~~iiL~~NK 273 (359)
.+.+++|||+|++.++. +..|+++++++|+|+|+++ ..++.+...|+..+.... ...++|++|++||
T Consensus 68 ~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 136 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDS----------RQSFDSSSSYLELLALHAKETQRSIPALLLGNK 136 (187)
T ss_dssp EEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_pred EEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhhccCCCCCEEEEEEC
Confidence 37899999999999987 4789999999999999998 777887777777776531 1257899999999
Q ss_pred CCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeec-cCCchHHHHHHHHHHHHHH
Q psy14891 274 FDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTA-TDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 274 ~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA-~d~~ni~~vf~~v~~~Il~ 350 (359)
+|+..++. .+.+++.+++.. ..+.+++||| +++.||+++|+.+.+.+.+
T Consensus 137 ~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 137 LDMAQYRQ------------------VTKAEGVALAGR----------FGCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp GGGGGGCS------------------SCHHHHHHHHHH----------HTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred cchhhcCc------------------cCHHHHHHHHHH----------cCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 99976544 567778888765 2356789999 8999999999999988753
No 62
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.84 E-value=6e-20 Score=156.09 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=93.1
Q ss_pred ceeeEEecCCcccccc-chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRR-KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~-~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+.+||++|++.++. .|..|+++++++|+|+|+++ ..++.+...|+..+.......++|++|++||+|
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 120 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTD----------RRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 120 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTT
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCC----------hHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcc
Confidence 6788999999999986 88889999999999999998 778888888888887765556899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+..++. ...+++.++... ..+.+++|||+++.||.++|+.+.+.+..+
T Consensus 121 l~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 121 LARSRE------------------VSLEEGRHLAGT----------LSCKHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp CGGGCC------------------SCHHHHHHHHHH----------TTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred hhhccc------------------CCHHHHHHHHHH----------cCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 976544 566777777665 346788999999999999999999887653
No 63
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.84 E-value=3.5e-20 Score=161.24 Aligned_cols=122 Identities=17% Similarity=0.207 Sum_probs=95.4
Q ss_pred EEEeeCC--ceeeEEecCCccccc-cchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQR-RKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS 266 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r-~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ 266 (359)
..+.+++ +.+.+||++|+++++ ..|..|+++++++|+|+|+++ ..++.....|+..+.......+.|
T Consensus 60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~p 129 (189)
T 1z06_A 60 RAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN----------MASFHSLPAWIEECKQHLLANDIP 129 (189)
T ss_dssp EEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHCCCSCCC
T ss_pred EEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCCCC
Confidence 3444444 689999999999999 899999999999999999998 677777777777777654456899
Q ss_pred EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCC---chHHHHHHH
Q psy14891 267 FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDT---SNVQTVFHA 343 (359)
Q Consensus 267 iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~---~ni~~vf~~ 343 (359)
++|++||+|+..++. ...+.+..|... ..+.+++|||+++ +||.++|..
T Consensus 130 iilv~nK~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~~~~i~~l~~~ 181 (189)
T 1z06_A 130 RILVGNKCDLRSAIQ------------------VPTDLAQKFADT----------HSMPLFETSAKNPNDNDHVEAIFMT 181 (189)
T ss_dssp EEEEEECTTCGGGCC------------------SCHHHHHHHHHH----------TTCCEEECCSSSGGGGSCHHHHHHH
T ss_pred EEEEEECccccccce------------------eCHHHHHHHHHH----------cCCEEEEEeCCcCCcccCHHHHHHH
Confidence 999999999976433 455666666554 3456789999999 999999999
Q ss_pred HHHHHH
Q psy14891 344 VMDLVI 349 (359)
Q Consensus 344 v~~~Il 349 (359)
+.+.+.
T Consensus 182 l~~~i~ 187 (189)
T 1z06_A 182 LAHKLK 187 (189)
T ss_dssp HC----
T ss_pred HHHHHh
Confidence 887764
No 64
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.84 E-value=4e-20 Score=161.50 Aligned_cols=119 Identities=19% Similarity=0.235 Sum_probs=94.1
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+|++.++..|..|+++++++|+|+|+++ ..++.+....|...+.. ...+.|++||+||+|+
T Consensus 71 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 71 FILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNN----------RTSFDNISTKWEPEIKH-YIDTAKTVLVGLKVDL 139 (194)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HCTTSEEEEEEECGGG
T ss_pred EEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChhh
Confidence 678999999999999999999999999999999998 67777764444444443 2467999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceE-EEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIY-PHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~-~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
..+.. . ....+++.++... ..+. +++|||+++.||.++|+.+.+.++++.
T Consensus 140 ~~~~~--~--------------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 140 RKDGS--D--------------DVTKQEGDDLCQK----------LGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp CCTTT--T--------------CCCHHHHHHHHHH----------HTCSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred ccCCC--C--------------cccHHHHHHHHHh----------cCCCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 75321 0 0456777777665 2233 788999999999999999999887654
No 65
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.84 E-value=7.4e-20 Score=156.24 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=88.6
Q ss_pred ceeeEEecCCccc--cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 197 SIVNMVDVGGQRS--QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 197 ~~l~i~D~~Gq~~--~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
+.+.+||++|++. ++..+..|+++++++|+|+|+++ ..++.....|+..+.......++|++|++||+
T Consensus 52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~ 121 (175)
T 2nzj_A 52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIAD----------RGSFESASELRIQLRRTHQADHVPIILVGNKA 121 (175)
T ss_dssp EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTC----------HHHHHHHHHHHHHHHHCC----CCEEEEEECT
T ss_pred EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhccCCCCEEEEEECh
Confidence 5789999999998 56777889999999999999998 67777777888777665445689999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
|+..++. ...+++..+... ..+.+++|||+++.||.++|+.+.+.+....
T Consensus 122 Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 122 DLARCRE------------------VSVEEGRACAVV----------FDCKFIETSATLQHNVAELFEGVVRQLRLRR 171 (175)
T ss_dssp TCTTTCC------------------SCHHHHHHHHHH----------HTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred hhccccc------------------cCHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 9976433 345666666544 2356789999999999999999999887653
No 66
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.8e-20 Score=165.76 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=96.4
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+.+|||+|+++++..|..|+++++++|+|+|+++ ..++.+...|+..+... ...+.|+
T Consensus 53 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~----------~~s~~~~~~~l~~i~~~-~~~~~pi 121 (223)
T 3cpj_B 53 RTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK----------SSSYENCNHWLSELREN-ADDNVAV 121 (223)
T ss_dssp EEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CC----------HHHHHHHHHHHHHHHHH-CC--CEE
T ss_pred EEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHh-CCCCCeE
Confidence 3444554 789999999999999999999999999999999998 67777777777777543 2457899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+||+||+|+..++. ...+++..|+.. ..+.+++|||+++.||+++|+.+.+.
T Consensus 122 ilv~nK~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~ 173 (223)
T 3cpj_B 122 GLIGNKSDLAHLRA------------------VPTEESKTFAQE----------NQLLFTETSALNSENVDKAFEELINT 173 (223)
T ss_dssp EEEECCGGGGGGCC------------------SCHHHHHHHHHH----------TTCEEEECCCC-CCCHHHHHHHHHHH
T ss_pred EEEEECcccccccc------------------cCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999876443 456677777654 34678899999999999999999998
Q ss_pred HHH
Q psy14891 348 VIK 350 (359)
Q Consensus 348 Il~ 350 (359)
+++
T Consensus 174 i~~ 176 (223)
T 3cpj_B 174 IYQ 176 (223)
T ss_dssp HTT
T ss_pred HHH
Confidence 875
No 67
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.84 E-value=6.5e-20 Score=157.05 Aligned_cols=124 Identities=14% Similarity=0.199 Sum_probs=96.3
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc---cCCCC
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN---RYFRE 264 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~---~~~~~ 264 (359)
..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ....+
T Consensus 47 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~ 116 (177)
T 1wms_A 47 KDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD----------SQSFQNLSNWKKEFIYYADVKEPES 116 (177)
T ss_dssp EEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTCSCTTT
T ss_pred EEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHccccccCC
Confidence 3444554 689999999999999999999999999999999998 55565555566555432 22367
Q ss_pred CeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHH
Q psy14891 265 ASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAV 344 (359)
Q Consensus 265 ~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v 344 (359)
.|+++++||+|+.. +. ...+++.+++.. ...+.+++|||+++.||.++|+.+
T Consensus 117 ~p~i~v~nK~Dl~~-~~------------------~~~~~~~~~~~~---------~~~~~~~~~Sa~~~~gi~~l~~~l 168 (177)
T 1wms_A 117 FPFVILGNKIDISE-RQ------------------VSTEEAQAWCRD---------NGDYPYFETSAKDATNVAAAFEEA 168 (177)
T ss_dssp SCEEEEEECTTCSS-CS------------------SCHHHHHHHHHH---------TTCCCEEECCTTTCTTHHHHHHHH
T ss_pred CcEEEEEECCcccc-cc------------------cCHHHHHHHHHh---------cCCceEEEEeCCCCCCHHHHHHHH
Confidence 89999999999863 22 356677777663 134567899999999999999999
Q ss_pred HHHHHHh
Q psy14891 345 MDLVIKI 351 (359)
Q Consensus 345 ~~~Il~~ 351 (359)
.+.+++.
T Consensus 169 ~~~~~~~ 175 (177)
T 1wms_A 169 VRRVLAT 175 (177)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 9988753
No 68
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.84 E-value=1.5e-20 Score=165.22 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=90.5
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC--CCCCeEEEEeeC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY--FREASFILFLNK 273 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~--~~~~~iiL~~NK 273 (359)
.+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+..... ..+.|++||+||
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSS----------MESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTC----------HHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 3679999999999999999999999999999999998 6777777888877765433 258999999999
Q ss_pred CCcch-hhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccC-CchHHHHHHHHHHHHHHh
Q psy14891 274 FDLFR-EKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATD-TSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 274 ~Dl~~-~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d-~~ni~~vf~~v~~~Il~~ 351 (359)
+|+.. ++. .+.+++.+++.. ..+.+++|||++ +.||.++|+.+.+.+.+.
T Consensus 142 ~Dl~~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 142 TDLPPQRHQ------------------VRLDMAQDWATT----------NTLDFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp C-------C------------------CCHHHHHHHHHH----------TTCEEEECCC-------CHHHHHHHHHHHHH
T ss_pred cccchhhcc------------------CCHHHHHHHHHH----------cCCEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 99876 443 456777777765 346788999999 999999999999988865
Q ss_pred hhh
Q psy14891 352 NLQ 354 (359)
Q Consensus 352 ~l~ 354 (359)
..+
T Consensus 194 ~~~ 196 (208)
T 2yc2_C 194 YED 196 (208)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
No 69
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.83 E-value=1.1e-19 Score=159.62 Aligned_cols=117 Identities=15% Similarity=0.224 Sum_probs=96.1
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...+.|++|++||+|
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D 124 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCD 124 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTC----------HHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTT
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcc
Confidence 3789999999999999999999999999999999998 66777777777776543 245789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+..++. ...+.+..+... ..+.++++||+++.||.++|+.+.+.+.++
T Consensus 125 l~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 125 MEDERV------------------VSSERGRQLADH----------LGFEFFEASAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp CTTSCC------------------SCHHHHHHHHHH----------HTCEEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred cCcccc------------------cCHHHHHHHHHH----------CCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 976443 456666666654 235678999999999999999999988765
No 70
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=3.9e-20 Score=161.57 Aligned_cols=116 Identities=11% Similarity=0.068 Sum_probs=94.4
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
...+.+||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...+.|++|++||+|
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~D 139 (192)
T 2fg5_A 71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK----------QDSFYTLKKWVKELKEH-GPENIVMAIAGNKCD 139 (192)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC----------THHHHHHHHHHHHHHHH-SCTTCEEEEEEECGG
T ss_pred EEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcc
Confidence 4789999999999999999999999999999999998 66777777777776543 245789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
+..++. ...+++.+++.. ..+.+++|||+++.||+++|+.+.+.+.+
T Consensus 140 l~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 140 LSDIRE------------------VPLKDAKEYAES----------IGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp GGGGCC------------------SCHHHHHHHHHT----------TTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred cccccc------------------cCHHHHHHHHHH----------cCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 965433 456677777653 34678899999999999999999887654
No 71
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=5.7e-20 Score=160.94 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=97.8
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++. +..|..|+++++++|+|+|+++ ..++.+...|+..+.......++|++|++||+|+
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 144 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITD----------RGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccc
Confidence 6799999999998 8899999999999999999998 6777777777777766544568999999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc-hHHHHHHHHHHHHHHhh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS-NVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~-ni~~vf~~v~~~Il~~~ 352 (359)
..++. ...+++.++... ..+.+++|||+++. ||.++|+.+.+.++++.
T Consensus 145 ~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 145 DHSRQ------------------VSTEEGEKLATE----------LACAFYECSACTGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp GGGCC------------------SCHHHHHHHHHH----------HTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred ccccc------------------cCHHHHHHHHHH----------hCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence 76543 456777777665 23678899999999 99999999999998754
No 72
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=3.8e-20 Score=156.97 Aligned_cols=116 Identities=17% Similarity=0.195 Sum_probs=92.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..+.|+++++||+|+
T Consensus 52 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl 120 (170)
T 1ek0_A 52 VKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK----------PQSFIKARHWVKELHEQA-SKDIIIALVGNKIDX 120 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGG
T ss_pred EEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCC----------hHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCc
Confidence 689999999999999999999999999999999998 677777777777776543 368899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
..+.- ... ...+.+.++... ..+.++++||+++.||.++|+.+.+.+
T Consensus 121 ~~~~~---~~~------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 121 LQEGG---ERK------------VAREEGEKLAEE----------KGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp GGSSC---CCC------------SCHHHHHHHHHH----------HTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred ccccc---ccC------------CCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 75311 000 345566666554 335788999999999999999887654
No 73
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.3e-19 Score=161.80 Aligned_cols=122 Identities=19% Similarity=0.157 Sum_probs=95.9
Q ss_pred EeeCC--ceeeEEecCCccc-cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEE
Q psy14891 192 FRLGE--SIVNMVDVGGQRS-QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFI 268 (359)
Q Consensus 192 ~~~~~--~~l~i~D~~Gq~~-~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ii 268 (359)
+.+++ +.+.+|||+|++. ++.++..||++++++|+|||+++ ..++.....|+..+.......++|++
T Consensus 80 i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~----------~~sf~~~~~~~~~l~~~~~~~~~pii 149 (211)
T 2g3y_A 80 LMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTEDIPII 149 (211)
T ss_dssp EEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTC----------HHHHHHHHHHHHHHHTSGGGTTSCEE
T ss_pred EEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 34444 5678999999988 67778889999999999999999 78888877787777654334579999
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
||+||+|+.+++. ...+++..+... ..+.+++|||++++||+++|+.+.+.+
T Consensus 150 lVgNK~DL~~~r~------------------v~~~e~~~~a~~----------~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 150 LVGNKSDLVRCRE------------------VSVSEGRACAVV----------FDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp EEEECTTCGGGCC------------------SCHHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEChHHhcCce------------------EeHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999976443 455666665543 235678999999999999999999988
Q ss_pred HHh
Q psy14891 349 IKI 351 (359)
Q Consensus 349 l~~ 351 (359)
...
T Consensus 202 ~~~ 204 (211)
T 2g3y_A 202 RLR 204 (211)
T ss_dssp HHH
T ss_pred HHh
Confidence 644
No 74
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=159.65 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=95.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++|||+|+++++..|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+|
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D 135 (201)
T 2q3h_A 68 VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVS----------PSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSD 135 (201)
T ss_dssp EEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGG
T ss_pred EEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHh
Confidence 678899999999999999999999999999999998 67777776 455555442 24899999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhhh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINL 353 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l 353 (359)
+..+.- ....+.. ........+++..+.... ....+++|||+++.||.++|+.+.+.+++..-
T Consensus 136 l~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~~---------~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 136 LREDVK--VLIELDK----CKEKPVPEEAAKLLAEEI---------KAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp GGGCHH--HHHHHHT----TTCCCCCHHHHHHHHHHH---------TCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred hhhchh--hhhhhcc----cccccCCHHHHHHHHHhc---------CCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 976321 1000000 000114566777776541 22367899999999999999999999887643
No 75
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.83 E-value=2e-19 Score=156.87 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=94.3
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
..+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... +.|+++++||+|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~i~~~~---~~piilv~NK~D- 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN----------SNTLDRAKTWVNQLKISS---NYIIILVANKID- 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-
Confidence 689999999999999999999999999999999998 666777777777776532 389999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
..++. ...+++.+|+.. ..+.+++|||+++.||.++|+.+.+.+.++
T Consensus 159 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 159 KNKFQ------------------VDILEVQKYAQD----------NNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CC-CC------------------SCHHHHHHHHHH----------TTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccc------------------CCHHHHHHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 33333 467778888776 346788999999999999999999988764
No 76
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.83 E-value=8.6e-20 Score=159.52 Aligned_cols=124 Identities=18% Similarity=0.220 Sum_probs=95.3
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.. ....+.|+
T Consensus 66 ~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~~~~i~~-~~~~~~pi 134 (192)
T 2il1_A 66 KTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMKMIDK-YASEDAEL 134 (192)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHH-HSCTTCEE
T ss_pred EEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHH-hcCCCCcE
Confidence 3344444 689999999999999999999999999999999998 5666665555555433 33457999
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+|++||+|+..++. ...+++..+... ...+.+++|||+++.||+++|+.+.+.
T Consensus 135 ilV~NK~Dl~~~~~------------------v~~~~~~~~~~~---------~~~~~~~~~SA~~g~gi~~l~~~l~~~ 187 (192)
T 2il1_A 135 LLVGNKLDCETDRE------------------ITRQQGEKFAQQ---------ITGMRFCEASAKDNFNVDEIFLKLVDD 187 (192)
T ss_dssp EEEEECGGGGGGCC------------------SCHHHHHHHHHT---------STTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred EEEEECcccccccc------------------cCHHHHHHHHHh---------cCCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999876433 345566655542 124677899999999999999999998
Q ss_pred HHHh
Q psy14891 348 VIKI 351 (359)
Q Consensus 348 Il~~ 351 (359)
++++
T Consensus 188 i~~~ 191 (192)
T 2il1_A 188 ILKK 191 (192)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8753
No 77
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.83 E-value=7.7e-20 Score=158.11 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=93.6
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.......+.|+++++||+|+
T Consensus 52 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 121 (189)
T 4dsu_A 52 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121 (189)
T ss_dssp EEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTS
T ss_pred EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccC
Confidence 568899999999999999999999999999999998 7778888888888877555568999999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
.... ...+.+..+... ..+.++++||+++.||.++|+.+.+.+.+.
T Consensus 122 ~~~~-------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 122 PSRT-------------------VDTKQAQDLARS----------YGIPFIETSAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp SSCS-------------------SCHHHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccc-------------------cCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 6432 345566666554 235678999999999999999999998764
No 78
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=1.2e-19 Score=154.00 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=92.3
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|+++++||+|+
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl 120 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------ERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDM 120 (170)
T ss_dssp EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTC
T ss_pred EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccC
Confidence 679999999999999999999999999999999998 55666666676666543 2357899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
.. +. ...+.+.++... ..+.++++||+++.||.++|..+.+.+.++
T Consensus 121 ~~-~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 121 ET-RV------------------VTADQGEALAKE----------LGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TT-CC------------------SCHHHHHHHHHH----------HTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred Cc-Cc------------------cCHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 33 22 345666666554 235678999999999999999999988754
No 79
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.83 E-value=8.5e-20 Score=156.27 Aligned_cols=121 Identities=18% Similarity=0.199 Sum_probs=96.1
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ..+.|+
T Consensus 54 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~pi 122 (179)
T 2y8e_A 54 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN----------TNSFHQTSKWIDDVRTER-GSDVII 122 (179)
T ss_dssp EEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHH-TTSSEE
T ss_pred EEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCcE
Confidence 3344444 689999999999999999999999999999999998 566777777777765532 357899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
++++||+|+..++. ...+++..++.. ..+.++++||+++.||+++|+.+.+.
T Consensus 123 ilv~nK~Dl~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~ 174 (179)
T 2y8e_A 123 MLVGNKTDLSDKRQ------------------VSTEEGERKAKE----------LNVMFIETSAKAGYNVKQLFRRVAAA 174 (179)
T ss_dssp EEEEECGGGGGGCC------------------SCHHHHHHHHHH----------HTCEEEEEBTTTTBSHHHHHHHHHHT
T ss_pred EEEEECCcccccCc------------------CCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999876543 456667766654 23678899999999999999998876
Q ss_pred HH
Q psy14891 348 VI 349 (359)
Q Consensus 348 Il 349 (359)
+.
T Consensus 175 ~~ 176 (179)
T 2y8e_A 175 LP 176 (179)
T ss_dssp CC
T ss_pred Hh
Confidence 53
No 80
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.83 E-value=1.1e-19 Score=157.50 Aligned_cols=128 Identities=18% Similarity=0.171 Sum_probs=93.2
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+
T Consensus 54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 121 (184)
T 1m7b_A 54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 121 (184)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcc
Confidence 3689999999999999999999999999999999998 67777663 444444332 3579999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeecc-CCchHHHHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTAT-DTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~-d~~ni~~vf~~v~~~Il~ 350 (359)
|+..+.. ....+. ...... .+.+++.++.... ..+.+++|||+ ++.||+++|+.+.+.+++
T Consensus 122 Dl~~~~~--~~~~~~---~~~~~~-v~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 122 DLRTDVS--TLVELS---NHRQTP-VSYDQGANMAKQI---------GAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp GGGGCHH--HHHHHH---TTTCCC-CCHHHHHHHHHHH---------TCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred hhhcchh--hHhhhh---hcccCC-CCHHHHHHHHHHc---------CCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9975321 000000 000011 5677788777651 22567899998 689999999999988874
No 81
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.7e-19 Score=157.34 Aligned_cols=126 Identities=14% Similarity=0.189 Sum_probs=93.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+.+||++|+++++..|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+|
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D 133 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY--APNVPFLLIGTQID 133 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTCCEEEEEECTT
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChh
Confidence 688999999999999999999999999999999998 66777766 455555442 34789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
+..+.- ....+ .+......+.+++.++.... ....+++|||+++.||+++|+.+.+.++
T Consensus 134 l~~~~~--~~~~~----~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 134 LRDDPK--TLARL----NDMKEKPICVEQGQKLAKEI---------GACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp STTCHH--HHHHH----TTTTCCCCCHHHHHHHHHHH---------TCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hccccc--chhhc----ccccCcccCHHHHHHHHHHc---------CCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 975421 00000 00011115667777777652 1125789999999999999999998876
No 82
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=161.50 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=80.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++||+||+|
T Consensus 82 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D 149 (214)
T 2j1l_A 82 VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS----------PNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTD 149 (214)
T ss_dssp EEEEEEEC---------------CEEEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGG
T ss_pred EEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChh
Confidence 578999999999999999999999999999999998 67777766 455554332 35789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCchHHHHHHHHHHHHHHhhh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSNVQTVFHAVMDLVIKINL 353 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni~~vf~~v~~~Il~~~l 353 (359)
+..++- ....+ .+......+.+++.++... ..+ .+++|||+++.||+++|+.+.+.+++...
T Consensus 150 l~~~~~--~~~~~----~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 150 LRKDKS--LVNKL----RRNGLEPVTYHRGQEMARS----------VGAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp GGSCHH--HHHHH----HHTTCCCCCHHHHHHHHHH----------TTCSEEEECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred hhccch--hhhhh----cccccCcccHHHHHHHHHh----------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 976432 00000 0000111567777777665 233 67899999999999999999999987643
No 83
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.82 E-value=3.9e-19 Score=152.61 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=88.2
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh--ccCCCCCeEEEEeeCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN--NRYFREASFILFLNKF 274 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~--~~~~~~~~iiL~~NK~ 274 (359)
+.+++|||+|+++ ..|+++++++|+|+|+++ ..++.+...|+..+.. .....++|++|++||+
T Consensus 54 ~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 118 (178)
T 2iwr_A 54 HLVLIREEAGAPD-----AKFSGWADAVIFVFSLED----------ENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118 (178)
T ss_dssp EEEEEEECSSSCC-----HHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECT
T ss_pred EEEEEEECCCCch-----hHHHHhCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 6789999999986 468899999999999998 6677666665443322 2223578999999999
Q ss_pred Ccch--hhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 275 DLFR--EKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 275 Dl~~--~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
|+.. ++. .+.+++.++.... ..+.+++|||+++.||+++|+.+.+.+++..
T Consensus 119 Dl~~~~~~~------------------v~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 119 RISASSPRV------------------VGDARARALXADM---------KRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp TCBTTBCCC------------------SCHHHHHHHHHHH---------SSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred cccccccCc------------------CCHHHHHHHHHhh---------cCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 9853 222 4567777776541 3467889999999999999999999998754
Q ss_pred h
Q psy14891 353 L 353 (359)
Q Consensus 353 l 353 (359)
-
T Consensus 172 ~ 172 (178)
T 2iwr_A 172 K 172 (178)
T ss_dssp H
T ss_pred h
Confidence 3
No 84
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.82 E-value=3.3e-19 Score=156.88 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=93.2
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc---CCCCCeEEEEeeC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR---YFREASFILFLNK 273 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~---~~~~~~iiL~~NK 273 (359)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.... ...+.|++|++||
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA----------PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp EEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred EEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 689999999999999999999999999999999998 556666656666554432 2247899999999
Q ss_pred CCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 274 FDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 274 ~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
+|+.. +. ...+.+..+... ...+.+++|||+++.||.++|+.+.+.+++..
T Consensus 127 ~Dl~~-~~------------------~~~~~~~~~~~~---------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 127 IDLEN-RQ------------------VATKRAQAWCYS---------KNNIPYFETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp TTSSC-CC------------------SCHHHHHHHHHH---------TTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CCCcc-cc------------------cCHHHHHHHHHh---------cCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99863 22 345666666553 13466789999999999999999999988654
No 85
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=172.77 Aligned_cols=133 Identities=19% Similarity=0.240 Sum_probs=102.8
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+..+++.+++|||+||+.++..|..|+++++++|+|+|+++ ..++.+...++..++.....
T Consensus 195 pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~----------~~s~~~~~~~~~~~~~~~~~ 264 (329)
T 3o47_A 195 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDEL 264 (329)
T ss_dssp EETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTC----------SSSHHHHHHHHHHHHTCGGG
T ss_pred cccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc----------hHHHHHHHHHHHHHHhhhcc
Confidence 57787777788889999999999999999999999999999999999998 78899999999999887767
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.++|++||+||+|+.... ..++....+.. .....+.+.+++|||+++.||.++|+
T Consensus 265 ~~~piilV~NK~Dl~~~~--------------------~~~~i~~~~~~-----~~~~~~~~~~~~vSAk~g~gi~el~~ 319 (329)
T 3o47_A 265 RDAVLLVFANKQDLPNAM--------------------NAAEITDKLGL-----HSLRHRNWYIQATCATSGDGLYEGLD 319 (329)
T ss_dssp TTCEEEEEEECTTSTTCC--------------------CHHHHHHHHTC-----TTCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred CCCeEEEEEECccCCccc--------------------CHHHHHHHhch-----hhhhcCCCEEEEEECCCCcCHHHHHH
Confidence 799999999999986431 22222222111 11123567889999999999999999
Q ss_pred HHHHHHHH
Q psy14891 343 AVMDLVIK 350 (359)
Q Consensus 343 ~v~~~Il~ 350 (359)
.+.+.+.+
T Consensus 320 ~l~~~l~~ 327 (329)
T 3o47_A 320 WLSNQLRN 327 (329)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99987754
No 86
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.82 E-value=2.3e-19 Score=159.02 Aligned_cols=128 Identities=18% Similarity=0.171 Sum_probs=93.4
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.+.+++|||+|++.++..|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+
T Consensus 75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~ 142 (205)
T 1gwn_A 75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS 142 (205)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHH--CCCCCEEEEEech
Confidence 3789999999999999999999999999999999998 66777763 454554332 3579999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeecc-CCchHHHHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTAT-DTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~-d~~ni~~vf~~v~~~Il~ 350 (359)
|+..+.- ....+. ...... .+.+++.++.... ..+.+++|||+ ++.||+++|+.+.+.+++
T Consensus 143 Dl~~~~~--~~~~~~---~~~~~~-v~~~~~~~~~~~~---------~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 143 DLRTDVS--TLVELS---NHRQTP-VSYDQGANMAKQI---------GAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp GGGGCHH--HHHHHH---TTTCCC-CCHHHHHHHHHHH---------TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred hhccchh--hhhhhc---ccccCC-CCHHHHHHHHHHc---------CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9975321 000000 000011 5667777777651 22567899998 689999999999998875
No 87
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.82 E-value=1.2e-19 Score=160.79 Aligned_cols=124 Identities=14% Similarity=0.152 Sum_probs=92.3
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++|||+|++.++..|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+|
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D 124 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS----------KASYENVLKKWMPELRRF--APNVPIVLVGTKLD 124 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHH
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHH
Confidence 689999999999999999999999999999999998 67777766 455554332 24789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+..++. ...+ -... .+.+++.++.... ....+++|||++++||.++|+.+.+.+++.
T Consensus 125 l~~~~~--~~~~-------~~~~-v~~~~~~~~~~~~---------~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 125 LRDDKG--YLAD-------HTNV-ITSTQGEELRKQI---------GAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHTCHH--HHHT-------CSSC-CCHHHHHHHHHHH---------TCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred hhhCcc--cccc-------ccCC-CCHHHHHHHHHHc---------CCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 876432 1000 0011 4667777776541 123678999999999999999999998754
No 88
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.82 E-value=4.3e-19 Score=154.15 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=84.6
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.......+.|++|++||+|+
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 138 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------SKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138 (190)
T ss_dssp EEEEEEECCC-----------CTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence 679999999999999999999999999999999998 6667777667666655433457899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhhhhh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQ 355 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~l~~ 355 (359)
... . ...+++.++... ..+.+++|||+++.||+++|+.+.+.+.+...+.
T Consensus 139 ~~~-~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 188 (190)
T 3con_A 139 PTR-T------------------VDTKQAHELAKS----------YGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188 (190)
T ss_dssp SCC-C------------------SCHHHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHHHHHC---
T ss_pred Ccc-c------------------CCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 652 2 345667766654 2356789999999999999999999988765443
No 89
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.81 E-value=8.3e-20 Score=157.12 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=89.1
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++||++|+++++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..+.|++|++||+|
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D 123 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS----------KASYENVSKKWIPELKHY--APGVPIVLVGTKLD 123 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHH
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh--CCCCCEEEEEechh
Confidence 578899999999999999999999999999999998 66676666 344444332 24789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
+..++. .... ...... ...+++.++.... ....+++|||++++||.++|+.+.+.++
T Consensus 124 l~~~~~--~~~~-----~~~~~~-v~~~~~~~~~~~~---------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 124 LRDDKQ--FFID-----HPGAVP-ITTVQGEELKKLI---------GAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHTCHH--HHHH-----C--CCC-CCHHHHHHHHHHH---------TCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred hhcCcc--cccc-----cccCCC-CCHHHHHHHHHHc---------CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 876443 1000 000111 4567777776541 1136789999999999999999988775
No 90
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.81 E-value=2.4e-19 Score=154.56 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=93.1
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... ..+.|++|++||+|
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~D 120 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS----------PASFENVRAKWYPEVRHH--CPNTPIILVGTKLD 120 (186)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--STTSCEEEEEECHH
T ss_pred EEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHHHHh--CCCCCEEEEeEccc
Confidence 678899999999999999999999999999999998 66777766 455555432 23889999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+..+.- ....+. +........+++..+... ..+ .+++|||+++.||.++|+.+.+.++..
T Consensus 121 l~~~~~--~~~~~~----~~~~~~v~~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 121 LRDDKD--TIEKLK----EKKLTPITYPQGLAMAKE----------IGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHTCHH--HHHHHH----HTTCCCCCHHHHHHHHHH----------TTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred ccccch--hhhhhc----ccccccCCHHHHHHHHHh----------cCCcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 865321 000000 000011466777777655 223 678999999999999999999887643
No 91
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=4.2e-19 Score=156.84 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=95.9
Q ss_pred EEEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe
Q psy14891 189 ETNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS 266 (359)
Q Consensus 189 ~~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~ 266 (359)
...+.+++ +.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|
T Consensus 59 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p 127 (213)
T 3cph_A 59 IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD----------ERTFTNIKQWFKTVNEH-ANDEAQ 127 (213)
T ss_dssp EEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-TTTCSE
T ss_pred EEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-cCCCCC
Confidence 34455555 789999999999999999999999999999999998 55666666666666543 234789
Q ss_pred EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 267 FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 267 iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
++||+||+|+.. +. ...+.+..+... ..+.++++||+++.||.++|..+.+
T Consensus 128 iilv~nK~Dl~~-~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 128 LLLVGNKSDMET-RV------------------VTADQGEALAKE----------LGIPFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp EEEEEECTTCSS-CC------------------SCHHHHHHHHHH----------HTCCEEECBTTTTBSSHHHHHHHHH
T ss_pred EEEEEECCCCcc-cc------------------cCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999833 22 345566666554 2245789999999999999999999
Q ss_pred HHHHh
Q psy14891 347 LVIKI 351 (359)
Q Consensus 347 ~Il~~ 351 (359)
.+.+.
T Consensus 179 ~~~~~ 183 (213)
T 3cph_A 179 LIQEK 183 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 92
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.81 E-value=4.4e-19 Score=156.13 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=93.1
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+....|...+... ..++|++|++||+|+
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl 141 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDL 141 (201)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGG
T ss_pred EEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh-CCCCCEEEEEecHHh
Confidence 689999999999999999999999999999999998 667776644444444332 357899999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
..+.. ....+. +........+++.++... ... .+++|||+++.||.++|+.+.+.+++
T Consensus 142 ~~~~~--~~~~~~----~~~~~~v~~~~~~~~~~~----------~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 142 RQDEH--TRRELA----KMKQEPVRSEEGRDMANR----------ISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTCHH--HHHHHH----TTTCCCCCHHHHHHHHHH----------TTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred hcCcc--chhhhc----ccccCcCCHHHHHHHHHh----------CCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 76432 111111 111111456777777665 223 67899999999999999999988763
No 93
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=158.20 Aligned_cols=121 Identities=16% Similarity=0.102 Sum_probs=90.6
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.. ....+.|++||+||+|+
T Consensus 77 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~----------~~s~~~~~~~~~~i~~-~~~~~~piilv~NK~Dl 145 (199)
T 2p5s_A 77 TVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC----------EKSFLNIREWVDMIED-AAHETVPIMLVGNKADI 145 (199)
T ss_dssp EEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHH-HC---CCEEEEEECGGG
T ss_pred EEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCC----------hHHHHHHHHHHHHHHH-hcCCCCCEEEEEECccc
Confidence 679999999999999999999999999999999998 5666666666665543 23357899999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
..... ... ... ...+.+.++... ..+.+++|||+++.||.++|..+.+.+.+
T Consensus 146 ~~~~~--~~~---------~~~-v~~~~~~~~~~~----------~~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 146 RDTAA--TEG---------QKC-VPGHFGEKLAMT----------YGALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHH--HTT---------CCC-CCHHHHHHHHHH----------HTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred ccccc--ccc---------ccc-cCHHHHHHHHHH----------cCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 75322 000 001 455667776665 23567899999999999999999887753
No 94
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.81 E-value=1.5e-18 Score=151.94 Aligned_cols=117 Identities=20% Similarity=0.173 Sum_probs=90.4
Q ss_pred ceeeEEecCCccc-cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRS-QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~-~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+.+|||+|++. ++.++..|+++++++|+|||+++ ..++.....|+..+.......++|++|++||+|
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~D 125 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTEDIPIILVGNKSD 125 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTT
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCCCCCeEEEEEechh
Confidence 5678999999987 67788899999999999999998 778887777777665533335789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+..++. ...+++..+... ..+.+++|||+++.||.++|+.+.+.+...
T Consensus 126 l~~~r~------------------v~~~~~~~~a~~----------~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 126 LVRXRE------------------VSVSEGRAXAVV----------FDXKFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp CGGGCC------------------SCHHHHHHHHHH----------TTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hhcccc------------------ccHHHHHHHHHH----------hCCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 875443 445555555443 335678999999999999999999988643
No 95
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=9e-19 Score=154.83 Aligned_cols=130 Identities=17% Similarity=0.215 Sum_probs=93.8
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+....|...+.. ...++|++|++||+|+
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl 141 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS----------PDSLENIPEKWVPEVKH-FCPNVPIILVANKKDL 141 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HSTTCCEEEEEECGGG
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHH-hCCCCCEEEEEEchhh
Confidence 689999999999999999999999999999999998 66666663333333332 2357899999999999
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHhh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKIN 352 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~~ 352 (359)
..+.. ....+. +........+++.++.... ....+++|||+++.||+++|+.+.+.+++..
T Consensus 142 ~~~~~--~~~~~~----~~~~~~v~~~~~~~~~~~~---------~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 142 RSDEH--VRTELA----RMKQEPVRTDDGRAMAVRI---------QAYDYLECSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp GGCHH--HHHHHH----HTTCCCCCHHHHHHHHHHT---------TCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred hcccc--chhhhh----hcccCCCCHHHHHHHHHhc---------CCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 76422 111111 1111114566777766551 2226788999999999999999999988654
No 96
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.80 E-value=8.6e-19 Score=147.57 Aligned_cols=115 Identities=16% Similarity=0.168 Sum_probs=93.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+.......+.|+++++||+|+
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl 120 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred EEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhh
Confidence 678899999999999999999999999999999998 6777777777777765444457899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
.... ...+.+.++... ..+.++++||+++.||+++|+.+.+.+.+
T Consensus 121 ~~~~-------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 121 AART-------------------VESRQAQDLARS----------YGIPYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp SCCC-------------------SCHHHHHHHHHH----------HTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred hhcc-------------------cCHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 6521 345566666554 23567889999999999999999887753
No 97
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=6.7e-19 Score=176.35 Aligned_cols=133 Identities=20% Similarity=0.260 Sum_probs=107.4
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
||+|+....+.++++.+.+|||+|++.++..|..|+++++++|+|||+++ ..++.+...++..++.....
T Consensus 352 ~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~----------~~s~~~~~~~~~~~~~~~~~ 421 (497)
T 3lvq_E 352 PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDREM 421 (497)
T ss_dssp CCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTSGGG
T ss_pred CccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcc----------hhHHHHHHHHHHHHhhhhhc
Confidence 57888888888889999999999999999999999999999999999999 78899999999999887777
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.++|++||+||+|+..+. +.++..+.+. ......+.+.+++|||++++||.++|+
T Consensus 422 ~~~p~ilv~NK~Dl~~~~--------------------~~~~~~~~~~-----~~~~~~~~~~~~~~SA~~g~gi~~l~~ 476 (497)
T 3lvq_E 422 RDAIILIFANKQDLPDAM--------------------KPHEIQEKLG-----LTRIRDRNWYVQPSCATSGDGLYEGLT 476 (497)
T ss_dssp TTCEEEEEEECCSSSSCC--------------------CHHHHHHHTT-----CTTCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred CCCcEEEEEECCCCCcCC--------------------CHHHHHHHhc-----hhhhhcCCeEEEEEECCCCCCHHHHHH
Confidence 899999999999986421 1222221111 111123567789999999999999999
Q ss_pred HHHHHHHH
Q psy14891 343 AVMDLVIK 350 (359)
Q Consensus 343 ~v~~~Il~ 350 (359)
.+.+.+-+
T Consensus 477 ~l~~~~~~ 484 (497)
T 3lvq_E 477 WLTSNYKS 484 (497)
T ss_dssp HHHHHCC-
T ss_pred HHHHHHHh
Confidence 99877643
No 98
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=4.6e-19 Score=150.52 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=89.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc-cCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN-RYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~-~~~~~~~iiL~~NK~D 275 (359)
+.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...++..+... ....+.|+++++||+|
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~D 120 (172)
T 2erx_A 51 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITS----------RQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120 (172)
T ss_dssp EEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHC---CCCEEEEEECGG
T ss_pred EEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccc
Confidence 678999999999999999999999999999999998 56666666676666543 2235789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
+..++. ...+++..+... ..+.++++||+++.||+++|+.+.+.+.
T Consensus 121 l~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 121 ESPSRE------------------VQSSEAEALART----------WKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp GGGGCC------------------SCHHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred cccccc------------------cCHHHHHHHHHH----------hCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 865433 344555555543 2356789999999999999999887543
No 99
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.79 E-value=7.5e-19 Score=156.23 Aligned_cols=116 Identities=11% Similarity=0.032 Sum_probs=89.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|++||+||+|+
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl 129 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTS----------RITCQNLARWVKEFQAV-VGNEAPIVVCANKIDI 129 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTC
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCC
Confidence 679999999999999999999999999999999998 55565555565655432 2346899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
..++. ...+.+..+... ..+.++++||+++.||+++|+.+.+.+.+.
T Consensus 130 ~~~~~------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 130 KNRQK------------------ISKKLVMEVLKG----------KNYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp C----------------------CCHHHHHHHTTT----------CCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred ccccc------------------cCHHHHHHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 76433 344444444332 456789999999999999999999988754
No 100
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.79 E-value=1.6e-19 Score=161.22 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=91.3
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
++.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+... ..++|++||+||+|
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~D 130 (221)
T 3gj0_A 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS----------RVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD 130 (221)
T ss_dssp EEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHH--STTCCEEEEEECTT
T ss_pred EEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEECCc
Confidence 4789999999999999999999999999999999998 66777777777777653 35889999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+..++. .. ++..+... ..+.+++|||+++.||.++|..+.+.++..
T Consensus 131 l~~~~~--~~------------------~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 131 IKDRKV--KA------------------KSIVFHRK----------KNLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp SSSCSS--CG------------------GGCCHHHH----------HTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred cccccc--cH------------------HHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 875443 10 12223332 235678999999999999999999998764
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.79 E-value=1.7e-18 Score=153.54 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=85.4
Q ss_pred CceeeEEecCCcccccc-chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc--CCCCCeEEEEee
Q psy14891 196 ESIVNMVDVGGQRSQRR-KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR--YFREASFILFLN 272 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~-~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~--~~~~~~iiL~~N 272 (359)
++.+++|||+|+++++. .|..|+++++++|+|+|++++ ...+.+...+|..++... ...++|++|++|
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 123 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF---------QREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc---------CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence 57899999999999998 899999999999999999872 234666777777776542 234689999999
Q ss_pred CCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhh--------------------hccCC---------CCc
Q psy14891 273 KFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFAL--------------------RNHNS---------AKV 323 (359)
Q Consensus 273 K~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~--------------------~~~~~---------~~~ 323 (359)
|+|+..++- .+...+.+.+.+.. ..... ...
T Consensus 124 K~Dl~~~~~--------------------~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (214)
T 2fh5_B 124 KQDIAMAKS--------------------AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLK 183 (214)
T ss_dssp CTTSTTCCC--------------------HHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSC
T ss_pred CCCCCCccc--------------------HHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCc
Confidence 999865321 12222222222110 00000 016
Q ss_pred eEEEEeeccCC------chHHHHHHHHHHH
Q psy14891 324 IYPHFTTATDT------SNVQTVFHAVMDL 347 (359)
Q Consensus 324 i~~~~tsA~d~------~ni~~vf~~v~~~ 347 (359)
+.+++|||+++ .||+++|+.+.+.
T Consensus 184 ~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 184 VEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp EEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred EEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 78899999999 9999999988764
No 102
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=3.2e-19 Score=155.82 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=90.5
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc-CCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR-YFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~-~~~~~~iiL~~NK~D 275 (359)
+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..+.... ...+.|++|++||+|
T Consensus 56 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~D 125 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTS----------KQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125 (199)
T ss_dssp EEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTC----------HHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTT
T ss_pred EEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 678999999999999999999999999999999998 566666556665554322 135789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHHh
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+..+. ...+.+..+... ..+.+++|||+++.||.++|+.+.+.+..+
T Consensus 126 l~~~~-------------------~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 126 ETQRE-------------------VDTREAQAVAQE----------WKCAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp CSSCS-------------------SCHHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred CCccc-------------------cCHHHHHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 86522 345566666544 235678999999999999999998877544
No 103
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.79 E-value=9.4e-19 Score=153.37 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=83.2
Q ss_pred CceeeEEecCCccccccc-h--hhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEee
Q psy14891 196 ESIVNMVDVGGQRSQRRK-W--IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLN 272 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~-w--~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~N 272 (359)
.+.+++||++|+++++.. | ..||++++++|+|+|+++ ...+.+.....|+..+.. ...++|++||+|
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--------~~~~~~~~~~~~l~~~~~--~~~~~piilv~n 137 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD--------DYMEALTRLHITVSKAYK--VNPDMNFEVFIH 137 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTS--------CCHHHHHHHHHHHHHHHH--HCTTCEEEEEEE
T ss_pred eeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCC--------chHHHHHHHHHHHHHHHh--cCCCCcEEEEEe
Confidence 478999999999998655 5 899999999999999997 011344444445554432 245899999999
Q ss_pred CCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 273 KFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 273 K~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
|+|+..+.. ....... ...+.+..+... . .....+.+++|||++ .||+++|..+.+.|
T Consensus 138 K~Dl~~~~~--~~~~~~~---------v~~~~~~~~~~~-----~-~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 138 KVDGLSDDH--KIETQRD---------IHQRANDDLADA-----G-LEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CGGGSCHHH--HHHHHHH---------HHHHHHHHHHHT-----T-CTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred ccccCchhh--hhHHHhH---------HHHHHHHHHHHh-----h-hhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 999865321 0000000 112223333221 1 012567889999999 99999999998765
No 104
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.78 E-value=1.3e-18 Score=153.73 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=90.9
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+.. .|+..+... . .+.|++|++||+|
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~D 145 (204)
T 4gzl_A 78 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH-C-PNTPIILVGTKLD 145 (204)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH-C-SSCCEEEEEECHH
T ss_pred EEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh-C-CCCCEEEEEechh
Confidence 667799999999999999999999999999999998 67777776 444444332 2 6789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
+..++. ....+ .+......+.+++..+... .....+++|||++++||.++|+.+.+.+
T Consensus 146 l~~~~~--~~~~~----~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 146 LRDDKD--TIEKL----KEKKLTPITYPQGLAMAKE---------IGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHTCHH--HHHHH----HHTTCCCCCHHHHHHHHHH---------TTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hccchh--hhhhh----hccccccccHHHHHHHHHh---------cCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 875432 00000 0000111456777777665 1223478999999999999999988754
No 105
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.78 E-value=3.6e-20 Score=162.72 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=83.6
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+...|+..+.. ....+.|+
T Consensus 73 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~-~~~~~~p~ 141 (199)
T 3l0i_B 73 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD----------QESFNNVKQWLQEIDR-YASENVNK 141 (199)
T ss_dssp EEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCC----------SHHHHHHHHHHHHHHS-CC-CCSEE
T ss_pred EEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHH-hccCCCCE
Confidence 3444444 689999999999999999999999999999999998 6777777777777643 33458999
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+|++||+|+..++. ...+++..+... ..+.++++||+++.||.++|+.+.+.
T Consensus 142 ilv~nK~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~~vSA~~g~gv~~l~~~l~~~ 193 (199)
T 3l0i_B 142 LLVGNKCDLTTKKV------------------VDYTTAKEFADS----------LGIPFLETSAKNATNVEQSFMTMAAE 193 (199)
T ss_dssp EEC-CCSSCC--CC------------------CCSCC-CHHHHT----------TTCCBCCCCC---HHHHHHHHHHTTT
T ss_pred EEEEECccCCcccc------------------CCHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999976543 122223333332 33557789999999999999998776
Q ss_pred HH
Q psy14891 348 VI 349 (359)
Q Consensus 348 Il 349 (359)
+.
T Consensus 194 l~ 195 (199)
T 3l0i_B 194 IK 195 (199)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.78 E-value=6.2e-18 Score=144.76 Aligned_cols=127 Identities=11% Similarity=0.116 Sum_probs=89.9
Q ss_pred EEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEE
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILF 270 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~ 270 (359)
.+.+++..+.+|||+|++.++..|..++.+++++|+|+|+++ ....++...+..+.. .++|++|+
T Consensus 49 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~-----------~~~~~~~~~l~~~~~----~~~p~ilv 113 (178)
T 2lkc_A 49 QVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD-----------GVMPQTVEAINHAKA----ANVPIIVA 113 (178)
T ss_dssp EEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTC-----------CCCHHHHHHHHHHGG----GSCCEEEE
T ss_pred EEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHh----CCCCEEEE
Confidence 445567788999999999999999999999999999999887 234555555555432 36899999
Q ss_pred eeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 271 LNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 271 ~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
+||+|+.... .++....+.. ...........+.+++|||+++.||+++|+.+.+.+..
T Consensus 114 ~nK~Dl~~~~---------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 114 INKMDKPEAN---------------------PDRVMQELME-YNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp EETTTSSCSC---------------------HHHHHHHHTT-TTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred EECccCCcCC---------------------HHHHHHHHHh-cCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 9999986421 1122222111 00000111123678899999999999999999998877
Q ss_pred hhhh
Q psy14891 351 INLQ 354 (359)
Q Consensus 351 ~~l~ 354 (359)
..++
T Consensus 172 ~~~~ 175 (178)
T 2lkc_A 172 EELK 175 (178)
T ss_dssp TTTT
T ss_pred hccc
Confidence 6654
No 107
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.78 E-value=6.8e-18 Score=159.28 Aligned_cols=126 Identities=16% Similarity=0.155 Sum_probs=92.7
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+.+|||+|++.++..|..|+++++++|+|+|+++ ..++.+.. .|+..+... ..++|++|++||+|
T Consensus 203 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D 270 (332)
T 2wkq_A 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS----------PASFHHVRAKWYPEVRHH--CPNTPIILVGTKLD 270 (332)
T ss_dssp EEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHH
T ss_pred EEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchh
Confidence 567799999999999999999999999999999998 66777766 344444332 23889999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
+..+.- ....+ .+........+++.+|... ..+ .+++|||+++.||.++|+.+.+.+++
T Consensus 271 l~~~~~--~~~~~----~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 271 LRDDKD--TIEKL----KEKKLTPITYPQGLAMAKE----------IGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHTCHH--HHHHH----HHTTCCCCCHHHHHHHHHH----------TTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cccccc--hhhhc----cccccccccHHHHHHHHHH----------cCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 865321 00000 0000011567778777765 233 67899999999999999999988874
No 108
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=6.5e-19 Score=152.85 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=84.3
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcc-cchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSV-NRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~-~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.+.+++||++|++.++..|..|+++++++++|+|+++ . .++.....|+..+... ..++|++|++||+
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~ 122 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSK----------GQAEVDAMKPWLFNIKAR--ASSSPVILVGTHL 122 (184)
T ss_dssp -CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGG----------CHHHHHTHHHHHHHHHHH--CTTCEEEEEEECG
T ss_pred ceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCc----------chhHHHHHHHHHHHHHhh--CCCCcEEEEEECC
Confidence 4789999999999999999999999999999999987 3 3455555666666443 2478999999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc-hHHHHHHHHHHHHHHh
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS-NVQTVFHAVMDLVIKI 351 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~-ni~~vf~~v~~~Il~~ 351 (359)
|+..++. . .....-..+.|..... -.....+++|||+++. ++..+|+.+.+.+.+.
T Consensus 123 Dl~~~~~------------------~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 123 DVSDEKQ------------------R--KACMSKITKELLNKRG-FPAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp GGCCHHH------------------H--HHHHHHHHHHTTTCTT-SCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred Ccccchh------------------h--HHHHHHHHHHHHHhcC-CcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 9876543 0 0000111111211000 0011237899999996 9999999988877643
No 109
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.76 E-value=2.9e-17 Score=144.18 Aligned_cols=123 Identities=17% Similarity=0.206 Sum_probs=95.2
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+.+||++|++.++..|..++++++++|+|+|+++ ..++.+...|+..+... ...+.|+
T Consensus 45 ~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~i 113 (199)
T 2f9l_A 45 RSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELRDH-ADSNIVI 113 (199)
T ss_dssp EEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred EEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCeE
Confidence 3445555 678899999999999999999999999999999998 55565555666655432 2357899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
++++||+|+...+- ...+.|..++.+ ..+.++.|||+|+.+++++|+.+.+.
T Consensus 114 ~~v~nK~Dl~~~~~------------------~~~~~a~~l~~~----------~~~~~~d~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 114 MLVGNKSDLRHLRA------------------VPTDEARAFAEK----------NNLSFIETSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp EEEEECTTCGGGCC------------------SCHHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEECcccccccC------------------cCHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999865433 345667776654 33566779999999999999999999
Q ss_pred HHHh
Q psy14891 348 VIKI 351 (359)
Q Consensus 348 Il~~ 351 (359)
+.+.
T Consensus 166 ~~~~ 169 (199)
T 2f9l_A 166 IYRI 169 (199)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 110
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.59 E-value=1.5e-19 Score=159.18 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=86.3
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHH-HHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESL-NLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~-~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+.+++|||+|+++++..|..++++++++|+|+|+++ ..++.+.. .|+..+.. . ..+.|++|++||+|
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~~~~~l~~-~-~~~~piilv~NK~D 145 (204)
T 3th5_A 78 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRH-H-CPNTPIILVGTKLD 145 (204)
Confidence 567899999999999999999999999999999998 56666665 34444332 2 23789999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
+..+.. ....+.. ........+++.++... ..+ .+++|||+++.||+++|+.+.+.++
T Consensus 146 l~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~----------~~~~~~~~vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 146 LRDDKD--TIEKLKE----KKLTPITYPQGLAMAKE----------IGAVKYLECSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 975432 1111100 00000233344444332 223 5678999999999999999887654
No 111
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.73 E-value=1.1e-16 Score=139.76 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=91.3
Q ss_pred EEEeeCC--ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 190 TNFRLGE--SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 190 ~~~~~~~--~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
..+.+++ +.+++||++|+++++..|..++++++++++|+|+++ ..++.+...|+..+... ...+.|+
T Consensus 69 ~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~i 137 (191)
T 1oix_A 69 RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELRDH-ADSNIVI 137 (191)
T ss_dssp EEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred EEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh-cCCCCcE
Confidence 4455555 566789999999999999999999999999999998 45555544555554332 2357899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
++++||+|+...+. ...+.|..++.+ ..+.++.|||+|+.+++++|+.+.+.
T Consensus 138 ~~v~nK~Dl~~~~~------------------~~~~~a~~l~~~----------~~~~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 138 MLVGNKSDLRHLRA------------------VPTDEARAFAEK----------NGLSFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp EEEEECGGGGGGCC------------------SCHHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEECcccccccc------------------cCHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999865433 345667777654 34566779999999999999998876
Q ss_pred H
Q psy14891 348 V 348 (359)
Q Consensus 348 I 348 (359)
|
T Consensus 190 i 190 (191)
T 1oix_A 190 I 190 (191)
T ss_dssp H
T ss_pred h
Confidence 5
No 112
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.73 E-value=4.2e-17 Score=138.88 Aligned_cols=111 Identities=19% Similarity=0.153 Sum_probs=78.5
Q ss_pred EeeCCceeeEEecCCcccccc------chhhhcc--CCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 192 FRLGESIVNMVDVGGQRSQRR------KWIYCFD--DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 192 ~~~~~~~l~i~D~~Gq~~~r~------~w~~~f~--~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
+.+++..+++|||+|+++++. ++..|++ +++++++|+|.++ ..+ ...|+..+.. .
T Consensus 45 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~---~~~~~~~~~~----~ 107 (165)
T 2wji_A 45 FEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA----------LER---NLYLTLQLME----M 107 (165)
T ss_dssp EEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTC----------HHH---HHHHHHHHHH----T
T ss_pred EEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCc----------hhH---hHHHHHHHHh----c
Confidence 445667899999999998863 4467776 8999999999987 222 2345555543 2
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
+.|+++++||+|+..++. ... ++..+... ..+.+++|||++++||+++|+.
T Consensus 108 ~~p~ilv~nK~Dl~~~~~------------------~~~-~~~~~~~~----------~~~~~~~~SA~~~~~v~~l~~~ 158 (165)
T 2wji_A 108 GANLLLALNKMDLAKSLG------------------IEI-DVDKLEKI----------LGVKVVPLSAAKKMGIEELKKA 158 (165)
T ss_dssp TCCEEEEEECHHHHHHTT------------------CCC-CHHHHHHH----------HTSCEEECBGGGTBSHHHHHHH
T ss_pred CCCEEEEEEchHhccccC------------------hhh-HHHHHHHH----------hCCCEEEEEcCCCCCHHHHHHH
Confidence 689999999999865432 111 12333332 1245788999999999999999
Q ss_pred HHHHH
Q psy14891 344 VMDLV 348 (359)
Q Consensus 344 v~~~I 348 (359)
+.+.+
T Consensus 159 l~~~~ 163 (165)
T 2wji_A 159 ISIAV 163 (165)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87654
No 113
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.72 E-value=4.1e-17 Score=153.66 Aligned_cols=133 Identities=16% Similarity=0.186 Sum_probs=93.8
Q ss_pred cccceeEEEEee-CCceeeEEecCCcccc-----ccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHH---H
Q psy14891 183 RTNGIIETNFRL-GESIVNMVDVGGQRSQ-----RRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNL---F 253 (359)
Q Consensus 183 ~T~G~~~~~~~~-~~~~l~i~D~~Gq~~~-----r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~---~ 253 (359)
+|+|+....+.+ +++.+++||++||+++ +..|..+|++++++|+|+|+++ ..++.+...| +
T Consensus 37 ~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~----------~~s~~~l~~~~~~l 106 (307)
T 3r7w_A 37 ATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVES----------TEVLKDIEIFAKAL 106 (307)
T ss_dssp CCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTC----------SCHHHHHHHHHHHH
T ss_pred CccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCC----------hhhHHHHHHHHHHH
Confidence 567766666665 5689999999999999 8899999999999999999998 5666555433 4
Q ss_pred HHHHhccCCCCCeEEEEeeCCCcch--hhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeec
Q psy14891 254 EQVVNNRYFREASFILFLNKFDLFR--EKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTA 331 (359)
Q Consensus 254 ~~i~~~~~~~~~~iiL~~NK~Dl~~--~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA 331 (359)
..+... ..++|++|++||+|+.. ++. .... ...+++.++... . .-..+.+++|||
T Consensus 107 ~~l~~~--~~~~piilv~NK~Dl~~~~~r~--~~~~------------v~~~~~~~~~~~----~---g~~~~~~~~tSa 163 (307)
T 3r7w_A 107 KQLRKY--SPDAKIFVLLHKMDLVQLDKRE--ELFQ------------IMMKNLSETSSE----F---GFPNLIGFPTSI 163 (307)
T ss_dssp HHHHHH--CTTCEEEEEEECGGGSCHHHHH--HHHH------------HHHHHHHHHHHT----T---TCCSCEEEECCT
T ss_pred HHHHHh--CCCCeEEEEEecccccchhhhh--HHHH------------HHHHHHHHHHHH----c---CCCCeEEEEeee
Confidence 443322 35799999999999876 331 0000 122344444432 0 001377899999
Q ss_pred cCCchHHHHHHHHHHHHH
Q psy14891 332 TDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 332 ~d~~ni~~vf~~v~~~Il 349 (359)
++ .++.++|..+...++
T Consensus 164 ~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 164 WD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp TS-SHHHHHHHHHHHTTC
T ss_pred cC-ChHHHHHHHHHHHHc
Confidence 99 899999998876553
No 114
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=150.55 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=81.9
Q ss_pred cCCccccccchhhhcc---------------------CCcEEEEEEECCCCccccccCCcc--cchHHHHHHHHHHHhcc
Q psy14891 204 VGGQRSQRRKWIYCFD---------------------DVKAVLYVVALSGYDMTLLEDSSV--NRLDESLNLFEQVVNNR 260 (359)
Q Consensus 204 ~~Gq~~~r~~w~~~f~---------------------~~~~iifv~dls~yd~~l~ed~~~--~~l~es~~~~~~i~~~~ 260 (359)
++||++++.+|..||+ +++++|+|+|+++ . .++.....|+..+....
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~----------~~~~s~~~~~~~l~~i~~~~ 194 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR----------GMNRNFDDQLKFVSNLYNQL 194 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--------------CHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC----------CchhhHHHHHHHHHHHHHHh
Confidence 9999999999999998 8999999999998 5 67777777777776542
Q ss_pred CCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHH
Q psy14891 261 YFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 261 ~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~v 340 (359)
...++|++|++||+|+..++. .+++.++... ...+.+++|||+++.||.++
T Consensus 195 ~~~~~piilV~NK~Dl~~~~~--------------------v~~~~~~~~~---------~~~~~~~e~SAk~g~gv~el 245 (255)
T 3c5h_A 195 AKTKKPIVVVLTKCDEGVERY--------------------IRDAHTFALS---------KKNLQVVETSARSNVNVDLA 245 (255)
T ss_dssp HHTTCCEEEEEECGGGBCHHH--------------------HHHHHHHHHT---------SSSCCEEECBTTTTBSHHHH
T ss_pred ccCCCCEEEEEEcccccccHH--------------------HHHHHHHHHh---------cCCCeEEEEECCCCCCHHHH
Confidence 335789999999999865443 2344444432 12456789999999999999
Q ss_pred HHHHHHHH
Q psy14891 341 FHAVMDLV 348 (359)
Q Consensus 341 f~~v~~~I 348 (359)
|+.+.+.+
T Consensus 246 f~~l~~~l 253 (255)
T 3c5h_A 246 FSTLVQLI 253 (255)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.70 E-value=6.4e-16 Score=138.66 Aligned_cols=126 Identities=15% Similarity=0.147 Sum_probs=85.0
Q ss_pred eEEEEeeCCceeeEEecCCc------ccc---ccchhhhccCCcEEEEEEECCCCccccccCCcccch--HHHHHHHHHH
Q psy14891 188 IETNFRLGESIVNMVDVGGQ------RSQ---RRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRL--DESLNLFEQV 256 (359)
Q Consensus 188 ~~~~~~~~~~~l~i~D~~Gq------~~~---r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l--~es~~~~~~i 256 (359)
....+..++..+.+|||+|+ +.. ...+..++..++++|||+|+++ ..++ .....++..+
T Consensus 67 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~l 136 (228)
T 2qu8_A 67 YVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISE----------QCGLTIKEQINLFYSI 136 (228)
T ss_dssp EEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTC----------TTSSCHHHHHHHHHHH
T ss_pred eeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEeccc----------ccCcchHHHHHHHHHH
Confidence 33444556788999999999 331 1234556889999999999997 3332 3445666666
Q ss_pred HhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHH---HHHHHHHHHHhhhccCCCCceEEEEeeccC
Q psy14891 257 VNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVD---SGALFIQHKFALRNHNSAKVIYPHFTTATD 333 (359)
Q Consensus 257 ~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~---~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d 333 (359)
... ..+.|++||+||+|+..++. ...+ .+.++... . ...+.+++|||++
T Consensus 137 ~~~--~~~~piilv~nK~Dl~~~~~------------------~~~~~~~~~~~~~~~-----~---~~~~~~~~~SA~~ 188 (228)
T 2qu8_A 137 KSV--FSNKSIVIGFNKIDKCNMDS------------------LSIDNKLLIKQILDN-----V---KNPIKFSSFSTLT 188 (228)
T ss_dssp HTC--C-CCCEEEEEECGGGCC--C------------------CCHHHHHHHHHHHHH-----C---CSCEEEEECCTTT
T ss_pred HHh--hcCCcEEEEEeCcccCCchh------------------hHHHHHHHHHHHHHh-----c---CCCceEEEEeccc
Confidence 442 35789999999999875432 1221 22333322 0 1226788999999
Q ss_pred CchHHHHHHHHHHHHHHh
Q psy14891 334 TSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 334 ~~ni~~vf~~v~~~Il~~ 351 (359)
++||.++|+.+.+.+.+.
T Consensus 189 g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 189 GVGVEQAKITACELLKND 206 (228)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988764
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.68 E-value=2.4e-16 Score=136.34 Aligned_cols=118 Identities=19% Similarity=0.112 Sum_probs=84.0
Q ss_pred eEEEEeeCCceeeEEecCCccccc------cchhhhcc--CCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc
Q psy14891 188 IETNFRLGESIVNMVDVGGQRSQR------RKWIYCFD--DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259 (359)
Q Consensus 188 ~~~~~~~~~~~l~i~D~~Gq~~~r------~~w~~~f~--~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~ 259 (359)
....+.+++..+.+|||+|++.++ ..|..|+. +++++++|+|.++ +.....|+..+..
T Consensus 45 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~-------------~~~~~~~~~~~~~- 110 (188)
T 2wjg_A 45 KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA-------------LERNLYLTLQLME- 110 (188)
T ss_dssp EEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG-------------HHHHHHHHHHHHT-
T ss_pred eEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh-------------HHHHHHHHHHHHh-
Confidence 334456677899999999999886 46788885 5999999999876 2333455555543
Q ss_pred cCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHH
Q psy14891 260 RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQT 339 (359)
Q Consensus 260 ~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~ 339 (359)
.+.|++|++||+|+..++. .. +.+.++... ..+.+++|||+++.||.+
T Consensus 111 ---~~~piilv~nK~Dl~~~~~------------------~~-~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 111 ---MGANLLLALNKMDLAKSLG------------------IE-IDVDKLEKI----------LGVKVVPLSAAKKMGIEE 158 (188)
T ss_dssp ---TTCCEEEEEECHHHHHHTT------------------CC-CCHHHHHHH----------HTSCEEECBGGGTBSHHH
T ss_pred ---cCCCEEEEEEhhhcccccc------------------ch-HHHHHHHHH----------hCCCeEEEEecCCCCHHH
Confidence 4689999999999876432 11 112233322 124578899999999999
Q ss_pred HHHHHHHHHHHh
Q psy14891 340 VFHAVMDLVIKI 351 (359)
Q Consensus 340 vf~~v~~~Il~~ 351 (359)
+|+.+.+.+.+.
T Consensus 159 l~~~i~~~~~~~ 170 (188)
T 2wjg_A 159 LKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999998877543
No 117
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.64 E-value=1.5e-15 Score=127.45 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=77.0
Q ss_pred EEEeeCCceeeEEecCCccc-------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 190 TNFRLGESIVNMVDVGGQRS-------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~-------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
..+...+..+.+||++|+.. ++..|..++++++++|+|+|.++ . +.....++..++..
T Consensus 42 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~--~~~~~~~~~~~~~~--- 106 (161)
T 2dyk_A 42 GVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRA----------E--LTQADYEVAEYLRR--- 106 (161)
T ss_dssp EEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSS----------C--CCHHHHHHHHHHHH---
T ss_pred EEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCC----------c--ccHhHHHHHHHHHh---
Confidence 34455667899999999987 46678889999999999999987 1 11222333344433
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCchHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSNVQTVF 341 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni~~vf 341 (359)
.+.|+++++||+|+..++. .... +. . ..+ .+++|||+++.||+++|
T Consensus 107 ~~~p~ilv~nK~Dl~~~~~--~~~~--------------------~~-----~------~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 107 KGKPVILVATKVDDPKHEL--YLGP--------------------LY-----G------LGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp HTCCEEEEEECCCSGGGGG--GCGG--------------------GG-----G------GSSCSCEECBTTTTBSHHHHH
T ss_pred cCCCEEEEEECcccccchH--hHHH--------------------HH-----h------CCCCCeEEEecccCCChHHHH
Confidence 4689999999999876422 1100 10 0 112 35789999999999999
Q ss_pred HHHHHH
Q psy14891 342 HAVMDL 347 (359)
Q Consensus 342 ~~v~~~ 347 (359)
+.+.+.
T Consensus 154 ~~l~~~ 159 (161)
T 2dyk_A 154 EAIWER 159 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988765
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.63 E-value=1.6e-15 Score=130.20 Aligned_cols=115 Identities=12% Similarity=0.224 Sum_probs=79.3
Q ss_pred eeEEEEeeCCceeeEEecCCcccccc---------chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 187 IIETNFRLGESIVNMVDVGGQRSQRR---------KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 187 ~~~~~~~~~~~~l~i~D~~Gq~~~r~---------~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
+....+.+++..+.+|||+|++.... .| .++++++++|+|+|.++ ..++. ...|+..+.
T Consensus 42 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~~~----------~~s~~-~~~~~~~~~ 109 (172)
T 2gj8_A 42 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTT----------TDAVD-PAEIWPEFI 109 (172)
T ss_dssp CEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEETTT----------CCCCS-HHHHCHHHH
T ss_pred eeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEECCC----------CCCHH-HHHHHHHHH
Confidence 33445566777899999999975321 22 46899999999999997 33332 245555554
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
.. ...++|++|++||+|+..+.. . +. . ...+.+++|||++++||
T Consensus 110 ~~-~~~~~p~ilv~NK~Dl~~~~~--~---~~-------~-----------------------~~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 110 AR-LPAKLPITVVRNKADITGETL--G---MS-------E-----------------------VNGHALIRLSARTGEGV 153 (172)
T ss_dssp HH-SCTTCCEEEEEECHHHHCCCC--E---EE-------E-----------------------ETTEEEEECCTTTCTTH
T ss_pred Hh-cccCCCEEEEEECccCCcchh--h---hh-------h-----------------------ccCCceEEEeCCCCCCH
Confidence 43 235789999999999854221 0 00 0 02356789999999999
Q ss_pred HHHHHHHHHHHH
Q psy14891 338 QTVFHAVMDLVI 349 (359)
Q Consensus 338 ~~vf~~v~~~Il 349 (359)
.++|+.+.+.+-
T Consensus 154 ~~l~~~l~~~~~ 165 (172)
T 2gj8_A 154 DVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.63 E-value=4.3e-16 Score=157.40 Aligned_cols=112 Identities=11% Similarity=0.108 Sum_probs=78.6
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
++.+.+||++||+.++..+..++++++++|+|+|+++ .+++. .|+..+... ..+.|++|++||+|
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~----------~~~~~---~~~~~l~~~--~~~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT----------DSNKH---YWLRHIEKY--GGKSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG----------GGGHH---HHHHHHHHH--SSSCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC----------chhHH---HHHHHHHHh--CCCCCEEEEEECCC
Confidence 5789999999999999999999999999999999987 23333 344444332 23689999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
+..++- ...+.+.+++.. ..+.+++|||+++.||+++|+.+.+.+.+
T Consensus 162 l~~~~~------------------v~~~~~~~~~~~----------~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 162 ENPSYN------------------IEQKKINERFPA----------IENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp TCTTCC------------------CCHHHHHHHCGG----------GTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred cccccc------------------cCHHHHHHHHHh----------cCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 875432 333443333221 22447889999999999999999988754
No 120
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.63 E-value=4.4e-15 Score=129.06 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=78.2
Q ss_pred eeeEEecCC----------ccccccchhhhccCC---cEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCC
Q psy14891 198 IVNMVDVGG----------QRSQRRKWIYCFDDV---KAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFRE 264 (359)
Q Consensus 198 ~l~i~D~~G----------q~~~r~~w~~~f~~~---~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~ 264 (359)
.+.+|||+| ++.++..|..|++++ +++|+|+|.++ ..+..+ ..++..+ .. .+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~~~~~-~~~~~~~-~~---~~ 134 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRH----------APSNDD-VQMYEFL-KY---YG 134 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCCHHH-HHHHHHH-HH---TT
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCC----------CCCHHH-HHHHHHH-HH---cC
Confidence 689999999 888999999999877 99999999987 333322 2222222 21 46
Q ss_pred CeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHH
Q psy14891 265 ASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAV 344 (359)
Q Consensus 265 ~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v 344 (359)
.|+++++||+|+..++- .+...+-+.+.+.. ...+.++++||+++.||.++|+.+
T Consensus 135 ~p~i~v~nK~Dl~~~~~--------------------~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~~l 189 (195)
T 1svi_A 135 IPVIVIATKADKIPKGK--------------------WDKHAKVVRQTLNI-----DPEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp CCEEEEEECGGGSCGGG--------------------HHHHHHHHHHHHTC-----CTTSEEEECCTTTCTTHHHHHHHH
T ss_pred CCEEEEEECcccCChHH--------------------HHHHHHHHHHHHcc-----cCCCceEEEEccCCCCHHHHHHHH
Confidence 89999999999865432 12222233332321 234678899999999999999998
Q ss_pred HHHH
Q psy14891 345 MDLV 348 (359)
Q Consensus 345 ~~~I 348 (359)
.+.+
T Consensus 190 ~~~l 193 (195)
T 1svi_A 190 KKMI 193 (195)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 121
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.61 E-value=9.7e-16 Score=132.40 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=74.9
Q ss_pred eeeEEecCC-----------ccccccchhhhccC-CcEEEEEEECCCCccccccCCcccchHHHHHHHHH---------H
Q psy14891 198 IVNMVDVGG-----------QRSQRRKWIYCFDD-VKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQ---------V 256 (359)
Q Consensus 198 ~l~i~D~~G-----------q~~~r~~w~~~f~~-~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~---------i 256 (359)
.+.+|||+| ++.++..|..|+++ ++++++|+++.+ ..++.+....|.. +
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d----------~~s~~~~~~~~~~~~~~~~~~~~ 114 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVD----------GKAAPEIIKRWEKRGEIPIDVEF 114 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEE----------TTHHHHHHHHHHHTTCCCHHHHH
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEc----------chhhhhHHHhhhccCccHHHHHH
Confidence 688999999 88899999999887 665555555554 3334443222221 1
Q ss_pred HhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCch
Q psy14891 257 VNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSN 336 (359)
Q Consensus 257 ~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~n 336 (359)
.......++|++|++||+|+..++. +.+.++... +.... ....+.+++|||++++|
T Consensus 115 ~~~~~~~~~piilv~nK~Dl~~~~~---------------------~~~~~~~~~-~~~~~--~~~~~~~~~~Sa~~~~~ 170 (190)
T 2cxx_A 115 YQFLRELDIPTIVAVNKLDKIKNVQ---------------------EVINFLAEK-FEVPL--SEIDKVFIPISAKFGDN 170 (190)
T ss_dssp HHHHHHTTCCEEEEEECGGGCSCHH---------------------HHHHHHHHH-HTCCG--GGHHHHEEECCTTTCTT
T ss_pred HHHHHhcCCceEEEeehHhccCcHH---------------------HHHHHHHHH-hhhhh--hccCCcEEEEecCCCCC
Confidence 1111124789999999999865321 222233222 11000 00013468899999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy14891 337 VQTVFHAVMDLVIKI 351 (359)
Q Consensus 337 i~~vf~~v~~~Il~~ 351 (359)
|+++|+.+.+.+.+.
T Consensus 171 v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 171 IERLKNRIFEVIRER 185 (190)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcchh
Confidence 999999999988654
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.61 E-value=5.5e-15 Score=128.03 Aligned_cols=114 Identities=13% Similarity=0.053 Sum_probs=76.9
Q ss_pred CceeeEEecCC----------ccccccchhhhccCC---cEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 196 ESIVNMVDVGG----------QRSQRRKWIYCFDDV---KAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 196 ~~~l~i~D~~G----------q~~~r~~w~~~f~~~---~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
+..+.+|||+| ++.++..|..|++++ +++++|+|.++.. .........++..
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~--------~~~~~~~~~~~~~------- 131 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPP--------QDSDLMMVEWMKS------- 131 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--------CHHHHHHHHHHHH-------
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCC--------CHHHHHHHHHHHH-------
Confidence 35688999999 888999999999876 9999999987610 1111122222222
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|+++++||+|+..+.- .+...+.+.+.+.. ...+.++++||++++||.++|+
T Consensus 132 ~~~p~i~v~nK~Dl~~~~~--------------------~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~ 186 (195)
T 3pqc_A 132 LNIPFTIVLTKMDKVKMSE--------------------RAKKLEEHRKVFSK-----YGEYTIIPTSSVTGEGISELLD 186 (195)
T ss_dssp TTCCEEEEEECGGGSCGGG--------------------HHHHHHHHHHHHHS-----SCCSCEEECCTTTCTTHHHHHH
T ss_pred cCCCEEEEEEChhcCChHH--------------------HHHHHHHHHHHHhh-----cCCCceEEEecCCCCCHHHHHH
Confidence 1689999999999864321 12222223332221 1335678999999999999999
Q ss_pred HHHHHHH
Q psy14891 343 AVMDLVI 349 (359)
Q Consensus 343 ~v~~~Il 349 (359)
.+.+.+.
T Consensus 187 ~l~~~l~ 193 (195)
T 3pqc_A 187 LISTLLK 193 (195)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988764
No 123
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=4.4e-16 Score=138.24 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=63.6
Q ss_pred CCceeeEEecCCccccccchhhhccC----CcEEEEEEECC-CCccccccCCcccchHHHHHHHHHHHhcc---CCCCCe
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDD----VKAVLYVVALS-GYDMTLLEDSSVNRLDESLNLFEQVVNNR---YFREAS 266 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~----~~~iifv~dls-~yd~~l~ed~~~~~l~es~~~~~~i~~~~---~~~~~~ 266 (359)
....+.+||++|++.++..|..|+++ ++++|+|+|.+ + ..++.+...++..+.... ...++|
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p 122 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENGID 122 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSC----------TTCCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCC----------hHHHHHHHHHHHHHHhcccccccCCCC
Confidence 34678999999999999999999988 89999999999 6 677888888888887643 236899
Q ss_pred EEEEeeCCCcchh
Q psy14891 267 FILFLNKFDLFRE 279 (359)
Q Consensus 267 iiL~~NK~Dl~~~ 279 (359)
++|++||+|+..+
T Consensus 123 ~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 123 ILIACNKSELFTA 135 (218)
T ss_dssp EEEEEECTTSTTC
T ss_pred EEEEEEchHhccc
Confidence 9999999998653
No 124
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.59 E-value=1e-14 Score=133.82 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=83.4
Q ss_pred eeEEEEeeCCceeeEEecCCccccccch------hhhc--cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 187 IIETNFRLGESIVNMVDVGGQRSQRRKW------IYCF--DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 187 ~~~~~~~~~~~~l~i~D~~Gq~~~r~~w------~~~f--~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
.....+..++..+.+|||+|+.+++..| ..|+ .+++++|+|+|.++ .. ..+.++..+..
T Consensus 42 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~----------~~---~~~~~~~~l~~ 108 (258)
T 3a1s_A 42 KKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVN----------PE---QSLYLLLEILE 108 (258)
T ss_dssp EEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTS----------CH---HHHHHHHHHHT
T ss_pred EEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCc----------hh---hHHHHHHHHHh
Confidence 3444556677899999999999988765 5666 58999999999987 22 33456666544
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
.+.|++|++||+|+..++- ... ++.++... ..+.+++|||+++.||.
T Consensus 109 ----~~~pvilv~NK~Dl~~~~~------------------i~~-~~~~l~~~----------lg~~vi~~SA~~g~gi~ 155 (258)
T 3a1s_A 109 ----MEKKVILAMTAIDEAKKTG------------------MKI-DRYELQKH----------LGIPVVFTSSVTGEGLE 155 (258)
T ss_dssp ----TTCCEEEEEECHHHHHHTT------------------CCB-CHHHHHHH----------HCSCEEECCTTTCTTHH
T ss_pred ----cCCCEEEEEECcCCCCccc------------------hHH-HHHHHHHH----------cCCCEEEEEeeCCcCHH
Confidence 2689999999999865432 111 12222222 23567899999999999
Q ss_pred HHHHHHHHHH
Q psy14891 339 TVFHAVMDLV 348 (359)
Q Consensus 339 ~vf~~v~~~I 348 (359)
++|+.+.+.+
T Consensus 156 el~~~i~~~~ 165 (258)
T 3a1s_A 156 ELKEKIVEYA 165 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 125
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.56 E-value=3.6e-14 Score=126.11 Aligned_cols=121 Identities=9% Similarity=0.082 Sum_probs=79.3
Q ss_pred CCceeeEEecCC----------ccccccchhhhccC---CcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 195 GESIVNMVDVGG----------QRSQRRKWIYCFDD---VKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 195 ~~~~l~i~D~~G----------q~~~r~~w~~~f~~---~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
++..+.+|||+| ++.++..+..|+++ ++++|||+|.++ .-. .....++..+..
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~-~~~~~~~~~l~~--- 142 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARR----------PLT-ELDRRMIEWFAP--- 142 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCC-HHHHHHHHHHGG---
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC----------CCC-HHHHHHHHHHHh---
Confidence 357899999999 56667778888876 778999999986 111 222333333322
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhcc-CCCCceEEEEeeccCCchHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNH-NSAKVIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~-~~~~~i~~~~tsA~d~~ni~~v 340 (359)
.+.|+++|+||+|+..... .+...+.+.+.+..... .....+.++++||+++.||.++
T Consensus 143 -~~~p~i~v~nK~Dl~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l 201 (223)
T 4dhe_A 143 -TGKPIHSLLTKCDKLTRQE--------------------SINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDA 201 (223)
T ss_dssp -GCCCEEEEEECGGGSCHHH--------------------HHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHH
T ss_pred -cCCCEEEEEeccccCChhh--------------------HHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHH
Confidence 4689999999999865432 12222233332222100 0124567889999999999999
Q ss_pred HHHHHHHHHH
Q psy14891 341 FHAVMDLVIK 350 (359)
Q Consensus 341 f~~v~~~Il~ 350 (359)
|+.+.+.+..
T Consensus 202 ~~~l~~~~~~ 211 (223)
T 4dhe_A 202 HALIESWLRP 211 (223)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHhcCc
Confidence 9999887754
No 126
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.56 E-value=1.7e-14 Score=133.39 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=77.3
Q ss_pred CceeeEEecCCccccc------cchhhhcc--CCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 196 ESIVNMVDVGGQRSQR------RKWIYCFD--DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r------~~w~~~f~--~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
+..+++|||+|+.+++ .++..|+. +++++|+|+|.++ . ...+.|+..+.. .+.|+
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~----------~---e~~~~~~~~l~~----~~~p~ 110 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN----------L---ERNLYLTTQLIE----TGIPV 110 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG----------H---HHHHHHHHHHHH----TCSCE
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc----------h---HhHHHHHHHHHh----cCCCE
Confidence 5789999999999887 56778886 5999999999887 2 233445555543 37899
Q ss_pred EEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 268 ILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 268 iL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+|++||+|+..++. .. .++.++... ..+.++.|||++++||+++|+.+.+.
T Consensus 111 ilv~NK~Dl~~~~~------------------~~-~~~~~l~~~----------lg~~vi~~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 111 TIALNMIDVLDGQG------------------KK-INVDKLSYH----------LGVPVVATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp EEEEECHHHHHHTT------------------CC-CCHHHHHHH----------HTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred EEEEEChhhCCcCC------------------cH-HHHHHHHHH----------cCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 99999999875432 11 112222222 13567889999999999999988764
Q ss_pred H
Q psy14891 348 V 348 (359)
Q Consensus 348 I 348 (359)
+
T Consensus 162 ~ 162 (272)
T 3b1v_A 162 T 162 (272)
T ss_dssp C
T ss_pred H
Confidence 3
No 127
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.54 E-value=4.9e-14 Score=129.99 Aligned_cols=119 Identities=19% Similarity=0.149 Sum_probs=87.0
Q ss_pred ceeEEEEeeCCceeeEEecCCcccccc------chhhhc--cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 186 GIIETNFRLGESIVNMVDVGGQRSQRR------KWIYCF--DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 186 G~~~~~~~~~~~~l~i~D~~Gq~~~r~------~w~~~f--~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
......+.+++..+.+||++|+.++.. .+..|+ .+++++|+|+|.++ ....+.++..+.
T Consensus 39 ~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~-------------~~~~~~~~~~~~ 105 (271)
T 3k53_A 39 EKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTC-------------LMRNLFLTLELF 105 (271)
T ss_dssp EEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGG-------------HHHHHHHHHHHH
T ss_pred EeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCc-------------chhhHHHHHHHH
Confidence 344455667788899999999999887 788888 78999999999886 245566666665
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
.. ...|+++++||+|+...+- .. .+ ... +.+++ .+.++.|||+++.||
T Consensus 106 ~~---~~~p~ilv~NK~Dl~~~~~--~~--------------~~---~~~-l~~~l---------g~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 106 EM---EVKNIILVLNKFDLLKKKG--AK--------------ID---IKK-MRKEL---------GVPVIPTNAKKGEGV 153 (271)
T ss_dssp HT---TCCSEEEEEECHHHHHHHT--CC--------------CC---HHH-HHHHH---------SSCEEECBGGGTBTH
T ss_pred hc---CCCCEEEEEEChhcCcccc--cH--------------HH---HHH-HHHHc---------CCcEEEEEeCCCCCH
Confidence 53 2389999999999876443 10 12 111 22221 255788999999999
Q ss_pred HHHHHHHHHHHH
Q psy14891 338 QTVFHAVMDLVI 349 (359)
Q Consensus 338 ~~vf~~v~~~Il 349 (359)
.++|+.+.+.+-
T Consensus 154 ~~l~~~i~~~~~ 165 (271)
T 3k53_A 154 EELKRMIALMAE 165 (271)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.51 E-value=4.4e-14 Score=139.96 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=92.0
Q ss_pred EEeeCCceeeEEecCC----------ccccccchhh-hccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc
Q psy14891 191 NFRLGESIVNMVDVGG----------QRSQRRKWIY-CFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~G----------q~~~r~~w~~-~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~ 259 (359)
.+..++..+++|||+| ++.++.++.. +++.++++|+|+|.++ .-......++..+..
T Consensus 237 ~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~-----------~~~~~~~~~~~~~~~- 304 (456)
T 4dcu_A 237 SFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE-----------GIIEQDKRIAGYAHE- 304 (456)
T ss_dssp EEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT-----------CCCHHHHHHHHHHHH-
T ss_pred EEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC-----------CcCHHHHHHHHHHHH-
Confidence 4555677899999999 7888877764 7899999999999886 112233344444433
Q ss_pred cCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHH
Q psy14891 260 RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQT 339 (359)
Q Consensus 260 ~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~ 339 (359)
.+.|++|++||+|+..++. ...+++.+++.+.+... ..+.+++|||+++.||.+
T Consensus 305 ---~~~~~ilv~NK~Dl~~~~~------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~SA~~g~gv~~ 358 (456)
T 4dcu_A 305 ---AGKAVVIVVNKWDAVDKDE------------------STMKEFEENIRDHFQFL-----DYAPILFMSALTKKRIHT 358 (456)
T ss_dssp ---TTCEEEEEEECGGGSCCCS------------------SHHHHHHHHHHHHCGGG-----TTSCEEECCTTTCTTGGG
T ss_pred ---cCCCEEEEEEChhcCCCch------------------HHHHHHHHHHHHhcccC-----CCCCEEEEcCCCCcCHHH
Confidence 4689999999999875433 45677888888765432 235678999999999999
Q ss_pred HHHHHHHHHHHh
Q psy14891 340 VFHAVMDLVIKI 351 (359)
Q Consensus 340 vf~~v~~~Il~~ 351 (359)
+|+.+.+.+.+.
T Consensus 359 l~~~i~~~~~~~ 370 (456)
T 4dcu_A 359 LMPAIIKASENH 370 (456)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999877543
No 129
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.8e-14 Score=123.01 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=63.0
Q ss_pred CCceeeEEecCCccccccchhhhccC----CcEEEEEEECC-CCccccccCCcccchHHHHHHHHHHHhcc---CCCCCe
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDD----VKAVLYVVALS-GYDMTLLEDSSVNRLDESLNLFEQVVNNR---YFREAS 266 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~----~~~iifv~dls-~yd~~l~ed~~~~~l~es~~~~~~i~~~~---~~~~~~ 266 (359)
.+..+.+|||+|++.++..|..|+.+ ++++|||+|++ + ..++.+...|+..++... ...++|
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p 158 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENGID 158 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCC----------HHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCC----------chhHHHHHHHHHHHHhhhhhccccCCC
Confidence 34678899999999999999999987 89999999999 6 677888888888887543 235799
Q ss_pred EEEEeeCCCcchh
Q psy14891 267 FILFLNKFDLFRE 279 (359)
Q Consensus 267 iiL~~NK~Dl~~~ 279 (359)
++||+||+|+..+
T Consensus 159 ~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 159 ILIACNKSELFTA 171 (193)
T ss_dssp EEEEEECTTSTTC
T ss_pred EEEEEEchHhcCC
Confidence 9999999998653
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.50 E-value=2.3e-13 Score=135.20 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=71.1
Q ss_pred eEEEEeeCCceeeEEecCCccccccch--------hhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc
Q psy14891 188 IETNFRLGESIVNMVDVGGQRSQRRKW--------IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259 (359)
Q Consensus 188 ~~~~~~~~~~~l~i~D~~Gq~~~r~~w--------~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~ 259 (359)
....+.+++..+.+|||+|++.++..| ..++++++++|+|+|.++-. +...+.+...++..+
T Consensus 272 ~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~-------s~~~~~~~~~~l~~l--- 341 (476)
T 3gee_A 272 IEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTER-------LDDELTEIRELKAAH--- 341 (476)
T ss_dssp -CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCS-------SGGGHHHHHHHHHHC---
T ss_pred EEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCc-------chhhhHHHHHHHHhc---
Confidence 344556678899999999998876544 45789999999999999811 111122334443332
Q ss_pred cCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHH
Q psy14891 260 RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQT 339 (359)
Q Consensus 260 ~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~ 339 (359)
.+.|+++|+||+|+..... . .... +.+. . ...++.|||++++||.+
T Consensus 342 ---~~~piIvV~NK~Dl~~~~~--------------------~-~~~~-l~~~----~-----~~~~i~vSAktg~GI~e 387 (476)
T 3gee_A 342 ---PAAKFLTVANKLDRAANAD--------------------A-LIRA-IADG----T-----GTEVIGISALNGDGIDT 387 (476)
T ss_dssp ---TTSEEEEEEECTTSCTTTH--------------------H-HHHH-HHHH----H-----TSCEEECBTTTTBSHHH
T ss_pred ---CCCCEEEEEECcCCCCccc--------------------h-hHHH-HHhc----C-----CCceEEEEECCCCCHHH
Confidence 2789999999999865432 1 1111 1111 0 13467899999999999
Q ss_pred HHHHHHHHHH
Q psy14891 340 VFHAVMDLVI 349 (359)
Q Consensus 340 vf~~v~~~Il 349 (359)
+|+.+.+.+.
T Consensus 388 L~~~i~~~~~ 397 (476)
T 3gee_A 388 LKQHMGDLVK 397 (476)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988775
No 131
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.49 E-value=4.1e-14 Score=129.70 Aligned_cols=116 Identities=14% Similarity=0.163 Sum_probs=81.4
Q ss_pred ceeEEEEeeCCceeeEEecCCcccccc----------chhhhc--cCCcEEEEEEECCCCccccccCCcccchHHHHHHH
Q psy14891 186 GIIETNFRLGESIVNMVDVGGQRSQRR----------KWIYCF--DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLF 253 (359)
Q Consensus 186 G~~~~~~~~~~~~l~i~D~~Gq~~~r~----------~w~~~f--~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~ 253 (359)
......+.+++..+.+|||+|+.+++. .+..|+ ++++++|+|+|.++ . ...+.+.
T Consensus 37 ~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~----------~---~~~~~l~ 103 (256)
T 3iby_A 37 EKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH----------L---ERHLYLT 103 (256)
T ss_dssp EEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG----------H---HHHHHHH
T ss_pred EEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC----------c---hhHHHHH
Confidence 344556667788999999999998875 567787 89999999999887 2 2333444
Q ss_pred HHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccC
Q psy14891 254 EQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATD 333 (359)
Q Consensus 254 ~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d 333 (359)
..+.. .+.|+++++||+|+...+- .. .+.+. +.+. ..+.++.|||++
T Consensus 104 ~~l~~----~~~pvilv~NK~Dl~~~~~----~~------------~~~~~----l~~~---------lg~~vi~~SA~~ 150 (256)
T 3iby_A 104 SQLFE----LGKPVVVALNMMDIAEHRG----IS------------IDTEK----LESL---------LGCSVIPIQAHK 150 (256)
T ss_dssp HHHTT----SCSCEEEEEECHHHHHHTT----CE------------ECHHH----HHHH---------HCSCEEECBGGG
T ss_pred HHHHH----cCCCEEEEEEChhcCCcCC----cH------------HHHHH----HHHH---------cCCCEEEEECCC
Confidence 44332 2789999999999876432 00 12211 2221 135678999999
Q ss_pred CchHHHHHHHHHHH
Q psy14891 334 TSNVQTVFHAVMDL 347 (359)
Q Consensus 334 ~~ni~~vf~~v~~~ 347 (359)
+.||.++|+.+.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999988754
No 132
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.49 E-value=5.3e-14 Score=130.15 Aligned_cols=116 Identities=19% Similarity=0.170 Sum_probs=78.9
Q ss_pred eeEEEEeeCCceeeEEecCCcccccc----------chhhhc--cCCcEEEEEEECCCCccccccCCcccchHHHHHHHH
Q psy14891 187 IIETNFRLGESIVNMVDVGGQRSQRR----------KWIYCF--DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFE 254 (359)
Q Consensus 187 ~~~~~~~~~~~~l~i~D~~Gq~~~r~----------~w~~~f--~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~ 254 (359)
.....+...+..+.+|||+|+.+++. .+..|+ ++++++|+|+|.++ ..+ .+.+..
T Consensus 40 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~----------~~~---~~~~~~ 106 (274)
T 3i8s_A 40 RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN----------LER---NLYLTL 106 (274)
T ss_dssp EEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG----------HHH---HHHHHH
T ss_pred EEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC----------hHH---HHHHHH
Confidence 34445666678899999999988773 345554 79999999999887 233 333333
Q ss_pred HHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCC
Q psy14891 255 QVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDT 334 (359)
Q Consensus 255 ~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~ 334 (359)
.+... +.|+++++||+|+.+++- .. .+.+ . +.+. ..+.++.|||+++
T Consensus 107 ~l~~~----~~p~ivv~NK~Dl~~~~~--~~--------------~~~~---~-l~~~---------lg~~~i~~SA~~g 153 (274)
T 3i8s_A 107 QLLEL----GIPCIVALNMLDIAEKQN--IR--------------IEID---A-LSAR---------LGCPVIPLVSTRG 153 (274)
T ss_dssp HHHHH----TCCEEEEEECHHHHHHTT--EE--------------ECHH---H-HHHH---------HTSCEEECCCGGG
T ss_pred HHHhc----CCCEEEEEECccchhhhh--HH--------------HHHH---H-HHHh---------cCCCEEEEEcCCC
Confidence 43332 689999999999875432 00 1111 1 1221 1256788999999
Q ss_pred chHHHHHHHHHHHH
Q psy14891 335 SNVQTVFHAVMDLV 348 (359)
Q Consensus 335 ~ni~~vf~~v~~~I 348 (359)
.||.++|+.+.+.+
T Consensus 154 ~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 154 RGIEALKLAIDRYK 167 (274)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999887654
No 133
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.48 E-value=7.6e-14 Score=137.48 Aligned_cols=124 Identities=14% Similarity=0.111 Sum_probs=89.1
Q ss_pred EEEeeCCceeeEEecCCc----------cccccchh-hhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 190 TNFRLGESIVNMVDVGGQ----------RSQRRKWI-YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq----------~~~r~~w~-~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
..+..++..+++|||+|+ +.++..+. .++++++++|+|+|.++ ..+.. ...++..+..
T Consensus 216 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~----------~~s~~-~~~~~~~~~~ 284 (436)
T 2hjg_A 216 TSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE----------GIIEQ-DKRIAGYAHE 284 (436)
T ss_dssp EEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT----------CCCHH-HHHHHHHHHH
T ss_pred EEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCc----------CCcHH-HHHHHHHHHH
Confidence 445566778999999999 44554444 47899999999999997 33333 3455555543
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
.+.|++|++||+|+.+++- ...++..+.+.+.|... ..+.+++|||+++.||.
T Consensus 285 ----~~~~iiiv~NK~Dl~~~~~------------------~~~~~~~~~~~~~l~~~-----~~~~~~~~SA~tg~~v~ 337 (436)
T 2hjg_A 285 ----AGKAVVIVVNKWDAVDKDE------------------STMKEFEENIRDHFQFL-----DYAPILFMSALTKKRIH 337 (436)
T ss_dssp ----TTCEEEEEEECGGGSCCCT------------------THHHHHHHHHHHHCGGG-----TTSCEEECCTTTCTTGG
T ss_pred ----cCCcEEEEEECccCCCcch------------------HHHHHHHHHHHHhcccC-----CCCCEEEEecccCCCHH
Confidence 4689999999999865332 23455666666655432 23567899999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14891 339 TVFHAVMDLVIKI 351 (359)
Q Consensus 339 ~vf~~v~~~Il~~ 351 (359)
++|+.+.+.+.+.
T Consensus 338 ~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 338 TLMPAIIKASENH 350 (436)
T ss_dssp GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887653
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.48 E-value=3.6e-12 Score=122.20 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=84.5
Q ss_pred EEEEeeCCceeeEEecCCccccc---------cchhhhccCCcEEEEEEECCCCccccccCCccc--chHHHHHHHHHHH
Q psy14891 189 ETNFRLGESIVNMVDVGGQRSQR---------RKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVN--RLDESLNLFEQVV 257 (359)
Q Consensus 189 ~~~~~~~~~~l~i~D~~Gq~~~r---------~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~--~l~es~~~~~~i~ 257 (359)
...+..++..+.+|||+|+.... .....+...++++|+|+|+++ .. .+.+...++..+.
T Consensus 206 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~----------~~~~~~~~~~~~~~~i~ 275 (357)
T 2e87_A 206 VGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE----------HCGFPLEEQIHLFEEVH 275 (357)
T ss_dssp EEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTC----------TTSSCHHHHHHHHHHHH
T ss_pred EEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCc----------cccCCHHHHHHHHHHHH
Confidence 33444556789999999986532 112234557999999999987 33 4566677777776
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
... .+.|+++++||+|+....- .+++.+++.. ..+.++++||++++||
T Consensus 276 ~~~--~~~piilV~NK~Dl~~~~~--------------------~~~~~~~~~~----------~~~~~~~iSA~~g~gi 323 (357)
T 2e87_A 276 GEF--KDLPFLVVINKIDVADEEN--------------------IKRLEKFVKE----------KGLNPIKISALKGTGI 323 (357)
T ss_dssp HHT--TTSCEEEEECCTTTCCHHH--------------------HHHHHHHHHH----------TTCCCEECBTTTTBTH
T ss_pred Hhc--CCCCEEEEEECcccCChHH--------------------HHHHHHHHHh----------cCCCeEEEeCCCCcCH
Confidence 532 2789999999999865322 2334444442 2345688999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14891 338 QTVFHAVMDLVIK 350 (359)
Q Consensus 338 ~~vf~~v~~~Il~ 350 (359)
.++|+.+.+.+..
T Consensus 324 ~~l~~~i~~~l~~ 336 (357)
T 2e87_A 324 DLVKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 135
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.47 E-value=1.6e-13 Score=128.73 Aligned_cols=120 Identities=12% Similarity=0.029 Sum_probs=83.1
Q ss_pred ccccceeEEEEee-CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCccc-chHHHHHHHHHHHhc
Q psy14891 182 VRTNGIIETNFRL-GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVN-RLDESLNLFEQVVNN 259 (359)
Q Consensus 182 ~~T~G~~~~~~~~-~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~-~l~es~~~~~~i~~~ 259 (359)
.||+|.... +.+ .+-++++||+ |++++.+|..||++++++|+|+|+++ .. ++.....|+..+ ..
T Consensus 48 ~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~----------~~~s~~~l~~~l~~~-~~ 113 (301)
T 1u0l_A 48 KIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKM----------PETSTYIIDKFLVLA-EK 113 (301)
T ss_dssp CCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSST----------TCCCHHHHHHHHHHH-HH
T ss_pred CCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCC----------CCCCHHHHHHHHHHH-HH
Confidence 367773222 222 1237999999 99999999999999999999999998 44 333333344433 32
Q ss_pred cCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHH
Q psy14891 260 RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQT 339 (359)
Q Consensus 260 ~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~ 339 (359)
.++|++|++||+|+..++. .+++.+++.. +. .. +.+++|||+++.||++
T Consensus 114 ---~~~piilv~NK~DL~~~~~--------------------v~~~~~~~~~-~~------~~-~~~~~~SAktg~gv~~ 162 (301)
T 1u0l_A 114 ---NELETVMVINKMDLYDEDD--------------------LRKVRELEEI-YS------GL-YPIVKTSAKTGMGIEE 162 (301)
T ss_dssp ---TTCEEEEEECCGGGCCHHH--------------------HHHHHHHHHH-HT------TT-SCEEECCTTTCTTHHH
T ss_pred ---CCCCEEEEEeHHHcCCchh--------------------HHHHHHHHHH-Hh------hh-CcEEEEECCCCcCHHH
Confidence 4789999999999865432 1334444432 21 12 5578999999999999
Q ss_pred HHHHHHH
Q psy14891 340 VFHAVMD 346 (359)
Q Consensus 340 vf~~v~~ 346 (359)
+|..+..
T Consensus 163 lf~~l~g 169 (301)
T 1u0l_A 163 LKEYLKG 169 (301)
T ss_dssp HHHHHSS
T ss_pred HHHHhcC
Confidence 9987653
No 136
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.44 E-value=5.1e-13 Score=133.24 Aligned_cols=131 Identities=13% Similarity=0.049 Sum_probs=84.3
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+.+....+...+..+.+|||+|++.+.+.+..++++++++|+|+|.++-. .+.. .+-.....+.+. ++.. .
T Consensus 97 iTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~---~~~~-~~~~~qt~e~~~-~~~~--~ 169 (483)
T 3p26_A 97 VTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA---FESG-FDLDGQTKEHML-LASS--L 169 (483)
T ss_dssp SSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----------CCCCHHHHHHHH-HHHH--T
T ss_pred cceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCc---cccc-cchhhhHHHHHH-HHHH--c
Confidence 3555556667778899999999999999999999999999999999998711 0000 001112222222 2221 2
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQT 339 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~ 339 (359)
...|++|++||+|+....- ...+++.+.+...+..+... ...+.++.+||++++||.+
T Consensus 170 ~~~~iIvviNK~Dl~~~~~------------------~~~~~i~~~~~~~l~~~g~~-~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 170 GIHNLIIAMNKMDNVDWSQ------------------QRFEEIKSKLLPYLVDIGFF-EDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TCCCEEEEEECGGGGTTCH------------------HHHHHHHHHHHHHHHHHTCC-GGGEEEEECCSSSCTTSSS
T ss_pred CCCcEEEEEECcCcccchH------------------HHHHHHHHHHHHHHHHcCCC-cccceEEEEeeecCCCccc
Confidence 2357999999999865221 23445555555544333211 1357788999999999975
No 137
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.44 E-value=1.6e-12 Score=122.31 Aligned_cols=117 Identities=12% Similarity=0.122 Sum_probs=80.5
Q ss_pred EeeC-CceeeEEecCCccccc----------cchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc
Q psy14891 192 FRLG-ESIVNMVDVGGQRSQR----------RKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR 260 (359)
Q Consensus 192 ~~~~-~~~l~i~D~~Gq~~~r----------~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~ 260 (359)
+..+ +..+.+|||+|+...+ ..+..++++++++|||+|.++ .....+...|+..+..
T Consensus 53 ~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~----------~~~~~~~~~~~~~l~~-- 120 (308)
T 3iev_A 53 KNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATE----------GWRPRDEEIYQNFIKP-- 120 (308)
T ss_dssp EEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTT----------BSCHHHHHHHHHHTGG--
T ss_pred EecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCC----------CCCchhHHHHHHHHHh--
Confidence 3445 7889999999996554 677889999999999999997 3444443333444432
Q ss_pred CCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHH
Q psy14891 261 YFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 261 ~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~v 340 (359)
.+.|++|++||+|+...+- ...+..+.+.+.+. ....++.+||+++.||.++
T Consensus 121 --~~~pvilV~NK~Dl~~~~~-------------------~~~~~~~~l~~~~~-------~~~~i~~vSA~~g~gv~~L 172 (308)
T 3iev_A 121 --LNKPVIVVINKIDKIGPAK-------------------NVLPLIDEIHKKHP-------ELTEIVPISALKGANLDEL 172 (308)
T ss_dssp --GCCCEEEEEECGGGSSSGG-------------------GGHHHHHHHHHHCT-------TCCCEEECBTTTTBSHHHH
T ss_pred --cCCCEEEEEECccCCCCHH-------------------HHHHHHHHHHHhcc-------CCCeEEEEeCCCCCCHHHH
Confidence 3689999999999862221 12222333333221 1244678999999999999
Q ss_pred HHHHHHHH
Q psy14891 341 FHAVMDLV 348 (359)
Q Consensus 341 f~~v~~~I 348 (359)
|+.+.+.+
T Consensus 173 ~~~l~~~l 180 (308)
T 3iev_A 173 VKTILKYL 180 (308)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99887754
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.42 E-value=1.5e-12 Score=129.42 Aligned_cols=116 Identities=13% Similarity=0.217 Sum_probs=80.6
Q ss_pred eeEEEEeeCCceeeEEecCCcc-ccc--------cchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHH
Q psy14891 187 IIETNFRLGESIVNMVDVGGQR-SQR--------RKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVV 257 (359)
Q Consensus 187 ~~~~~~~~~~~~l~i~D~~Gq~-~~r--------~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~ 257 (359)
+....+.+++.++.+|||+|++ ... ..+..+++.++++|+|+|.++ .....+ .++++.+
T Consensus 281 ~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~----------~~s~~~-~~il~~l- 348 (482)
T 1xzp_A 281 VISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASS----------PLDEED-RKILERI- 348 (482)
T ss_dssp SCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTS----------CCCHHH-HHHHHHH-
T ss_pred eEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCC----------CCCHHH-HHHHHHh-
Confidence 3344566678899999999998 543 234568899999999999987 333322 3444332
Q ss_pred hccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchH
Q psy14891 258 NNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNV 337 (359)
Q Consensus 258 ~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni 337 (359)
.+.|+++++||+|+..+ + +.++..+++ . ..+.++++||++++||
T Consensus 349 -----~~~piivV~NK~DL~~~-~-------------------~~~~~~~~~-----~------~~~~~i~iSAktg~Gi 392 (482)
T 1xzp_A 349 -----KNKRYLVVINKVDVVEK-I-------------------NEEEIKNKL-----G------TDRHMVKISALKGEGL 392 (482)
T ss_dssp -----TTSSEEEEEEECSSCCC-C-------------------CHHHHHHHH-----T------CSTTEEEEEGGGTCCH
T ss_pred -----cCCCEEEEEECcccccc-c-------------------CHHHHHHHh-----c------CCCcEEEEECCCCCCH
Confidence 36799999999998542 2 223333221 0 1234678999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14891 338 QTVFHAVMDLVIK 350 (359)
Q Consensus 338 ~~vf~~v~~~Il~ 350 (359)
.++|+.+.+.+..
T Consensus 393 ~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 393 EKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987763
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.40 E-value=2.7e-12 Score=126.43 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=79.1
Q ss_pred EEeeCCceeeEEecCCccccccch------------hhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRRKW------------IYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN 258 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~~w------------~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~ 258 (359)
.+.+++..+.+|||+|+++.+... ..+++.++++++|+|.++ .....+ ..+.. .+.
T Consensus 222 ~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~----------~~~~~~-~~i~~-~l~ 289 (439)
T 1mky_A 222 EVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ----------GITRQD-QRMAG-LME 289 (439)
T ss_dssp EEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTT----------CCCHHH-HHHHH-HHH
T ss_pred EEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CCCHHH-HHHHH-HHH
Confidence 455677789999999997654432 246778999999999986 222222 22222 222
Q ss_pred ccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHH
Q psy14891 259 NRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 259 ~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
. .+.|+++++||+|+.+++- .+.++..+.+.+.|... ....+++|||+++.||.
T Consensus 290 ~---~~~~~ilv~NK~Dl~~~~~------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~SA~~g~gv~ 343 (439)
T 1mky_A 290 R---RGRASVVVFNKWDLVVHRE------------------KRYDEFTKLFREKLYFI-----DYSPLIFTSADKGWNID 343 (439)
T ss_dssp H---TTCEEEEEEECGGGSTTGG------------------GCHHHHHHHHHHHCGGG-----TTSCEEECBTTTTBSHH
T ss_pred H---cCCCEEEEEECccCCCchh------------------hHHHHHHHHHHHHhccC-----CCCcEEEEECCCCCCHH
Confidence 2 3689999999999875432 23455555555544322 23457889999999999
Q ss_pred HHHHHHHHHHHH
Q psy14891 339 TVFHAVMDLVIK 350 (359)
Q Consensus 339 ~vf~~v~~~Il~ 350 (359)
++|+.+.+.+-+
T Consensus 344 ~l~~~i~~~~~~ 355 (439)
T 1mky_A 344 RMIDAMNLAYAS 355 (439)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999876654
No 140
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.40 E-value=3.5e-12 Score=125.66 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=83.9
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+.+....+...+..+.+|||+|++.|.+.+..+++.+|++|+|+|.++-.. |. ..+....+.+.+..+..
T Consensus 81 iTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~---e~-~~~~~~qt~e~l~~~~~---- 152 (439)
T 3j2k_7 81 KTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF---ET-GFEKGGQTREHAMLAKT---- 152 (439)
T ss_pred ceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCcc---cc-ccCCCchHHHHHHHHHH----
Confidence 45556666777788999999999999999999999999999999999986110 00 00000122333332221
Q ss_pred CCCe-EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 263 REAS-FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 263 ~~~~-iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
.++| +++++||+|+..... .. ...++..+-+...+..+.-.+...+.++.+||+++.||.+++
T Consensus 153 ~~v~~iIvviNK~Dl~~~~~--~~--------------~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~ 216 (439)
T 3j2k_7 153 AGVKHLIVLINKMDDPTVNW--SN--------------ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQS 216 (439)
T ss_pred cCCCeEEEEeecCCCcccch--HH--------------HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccc
Confidence 2455 999999999853111 00 112222222222222222111235778899999999999865
Q ss_pred H
Q psy14891 342 H 342 (359)
Q Consensus 342 ~ 342 (359)
+
T Consensus 217 ~ 217 (439)
T 3j2k_7 217 D 217 (439)
T ss_pred c
Confidence 5
No 141
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.39 E-value=5.3e-12 Score=118.28 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=73.6
Q ss_pred eCCceeeEEecCCccc--------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCC
Q psy14891 194 LGESIVNMVDVGGQRS--------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREA 265 (359)
Q Consensus 194 ~~~~~l~i~D~~Gq~~--------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~ 265 (359)
.++..+.+|||+|+.. +...+..++++++++|||+|.++ .-... ..++...+... ..++
T Consensus 52 ~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~----------~~~~~--~~~i~~~l~~~-~~~~ 118 (301)
T 1wf3_A 52 EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRH----------PPTPE--DELVARALKPL-VGKV 118 (301)
T ss_dssp ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTS----------CCCHH--HHHHHHHHGGG-TTTS
T ss_pred eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCC----------CCChH--HHHHHHHHHhh-cCCC
Confidence 4568899999999986 45566778999999999999987 21111 23333333322 2478
Q ss_pred eEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 266 SFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 266 ~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
|++||+||+|+...+- ...+.+.. + . ....++.+||+++.||..+|+.+.
T Consensus 119 p~ilV~NK~Dl~~~~~----------------------~~~~~~~~-~---~----~~~~~~~iSA~~g~gv~~l~~~l~ 168 (301)
T 1wf3_A 119 PILLVGNKLDAAKYPE----------------------EAMKAYHE-L---L----PEAEPRMLSALDERQVAELKADLL 168 (301)
T ss_dssp CEEEEEECGGGCSSHH----------------------HHHHHHHH-T---S----TTSEEEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEEECcccCCchH----------------------HHHHHHHH-h---c----CcCcEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999864211 01112221 1 0 112467899999999999998876
Q ss_pred HH
Q psy14891 346 DL 347 (359)
Q Consensus 346 ~~ 347 (359)
+.
T Consensus 169 ~~ 170 (301)
T 1wf3_A 169 AL 170 (301)
T ss_dssp TT
T ss_pred Hh
Confidence 54
No 142
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.38 E-value=3.3e-13 Score=132.02 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=78.6
Q ss_pred eEEEEeeCCc-eeeEEecCCccccccc-------hhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc
Q psy14891 188 IETNFRLGES-IVNMVDVGGQRSQRRK-------WIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259 (359)
Q Consensus 188 ~~~~~~~~~~-~l~i~D~~Gq~~~r~~-------w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~ 259 (359)
....+.+.+. ++.+|||+|+..+... +..++++++++|+|+|.+. .... ..|+..+...
T Consensus 73 ~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~----------~~~~---~~~l~~l~~~ 139 (423)
T 3qq5_A 73 VYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP----------TPYE---DDVVNLFKEM 139 (423)
T ss_dssp CEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC----------CHHH---HHHHHHHHHT
T ss_pred EEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC----------hHHH---HHHHHHHHhc
Confidence 3344445444 8999999999887655 4568999999999999843 2222 3334433332
Q ss_pred cCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHH
Q psy14891 260 RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQT 339 (359)
Q Consensus 260 ~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~ 339 (359)
+.|+++|+||+|+..+.. . +.+..+ . ....+.++++||+++.||++
T Consensus 140 ----~~piIvV~NK~Dl~~~~~------------------~--~~~~~l-----~-----~~~g~~v~~vSAktg~gI~e 185 (423)
T 3qq5_A 140 ----EIPFVVVVNKIDVLGEKA------------------E--ELKGLY-----E-----SRYEAKVLLVSALQKKGFDD 185 (423)
T ss_dssp ----TCCEEEECCCCTTTTCCC------------------T--HHHHHS-----S-----CCTTCCCCCCSSCCTTSTTT
T ss_pred ----CCCEEEEEeCcCCCCccH------------------H--HHHHHH-----H-----HHcCCCEEEEECCCCCCHHH
Confidence 789999999999876433 1 111111 1 01335677899999999999
Q ss_pred HHHHHHHHHH
Q psy14891 340 VFHAVMDLVI 349 (359)
Q Consensus 340 vf~~v~~~Il 349 (359)
+|+.+.+.+.
T Consensus 186 L~~~L~~~l~ 195 (423)
T 3qq5_A 186 IGKTISEILP 195 (423)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhhh
Confidence 9999988763
No 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.37 E-value=1.6e-11 Score=117.96 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=84.2
Q ss_pred ccceeEEEEeeCCceeeEEecCCc---------cccccchhhhccCCcEEEEEEECCCCccccccCCccc-chHHHHHHH
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQ---------RSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVN-RLDESLNLF 253 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq---------~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~-~l~es~~~~ 253 (359)
|.+.....+.+++..+.+|||+|+ +.+++.+. .+..++.+++|+|+++ .. ...+....+
T Consensus 213 T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~----------~~~~~~~~~~~~ 281 (364)
T 2qtf_A 213 TMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTF----------SENLLIETLQSS 281 (364)
T ss_dssp -CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTS----------CHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCC----------CcchHHHHHHHH
Confidence 333444556677788999999997 23444444 5789999999999987 22 133344444
Q ss_pred HHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccC
Q psy14891 254 EQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATD 333 (359)
Q Consensus 254 ~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d 333 (359)
..++......+.|+++|+||+|+..... . ...+.+.++... +. .....+..|||++
T Consensus 282 ~~~L~~l~~~~~p~ilV~NK~Dl~~~~~--~---------------~~~~~~~~l~~~-l~------~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 282 FEILREIGVSGKPILVTLNKIDKINGDL--Y---------------KKLDLVEKLSKE-LY------SPIFDVIPISALK 337 (364)
T ss_dssp HHHHHHHTCCSCCEEEEEECGGGCCSCH--H---------------HHHHHHHHHHHH-HC------SCEEEEEECBTTT
T ss_pred HHHHHHhCcCCCCEEEEEECCCCCCchH--H---------------HHHHHHHHHHHH-hc------CCCCcEEEEECCC
Confidence 4444433345789999999999864221 0 001122222222 10 0123457899999
Q ss_pred CchHHHHHHHHHHHHHHhhh
Q psy14891 334 TSNVQTVFHAVMDLVIKINL 353 (359)
Q Consensus 334 ~~ni~~vf~~v~~~Il~~~l 353 (359)
++|+..+++.+.+.+.....
T Consensus 338 g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp TBSHHHHHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHhcccCC
Confidence 99999999999887765443
No 144
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.37 E-value=5.9e-12 Score=121.31 Aligned_cols=127 Identities=8% Similarity=-0.069 Sum_probs=86.4
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+++....+..++..+.+|||+|++.|.+....+++.++++|+|+| ++ ..+....+++..+..
T Consensus 46 iTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-----------g~~~qt~e~~~~~~~---- 109 (370)
T 2elf_A 46 TSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-----------GLDAHTGECIIALDL---- 109 (370)
T ss_dssp EESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-----------CCCHHHHHHHHHHHH----
T ss_pred EEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-----------CCcHHHHHHHHHHHH----
Confidence 45555556666677889999999999998888888999999999999 54 334455555544322
Q ss_pred CCCeE-EEEee-CCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEE--eeccC---Cc
Q psy14891 263 REASF-ILFLN-KFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHF--TTATD---TS 335 (359)
Q Consensus 263 ~~~~i-iL~~N-K~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~--tsA~d---~~ 335 (359)
.++|. ++++| |+|+ .+.. .+...+-+.+.+... ....+.++. +||++ ++
T Consensus 110 ~~i~~~ivvvNNK~Dl-~~~~--------------------~~~~~~~i~~~l~~~---~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 110 LGFKHGIIALTRSDST-HMHA--------------------IDELKAKLKVITSGT---VLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp TTCCEEEEEECCGGGS-CHHH--------------------HHHHHHHHHHHTTTS---TTTTCEEEECCCCTTSSSTTT
T ss_pred cCCCeEEEEEEeccCC-CHHH--------------------HHHHHHHHHHHHHhc---CCCceEEEecccccccCcCCC
Confidence 24566 88889 9999 4322 111111222211111 113467788 99999 99
Q ss_pred hHHHHHHHHHHHHH
Q psy14891 336 NVQTVFHAVMDLVI 349 (359)
Q Consensus 336 ni~~vf~~v~~~Il 349 (359)
||.++|+.+.+.+-
T Consensus 166 gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 166 GVDELKARINEVAE 179 (370)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcc
Confidence 99999998887653
No 145
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.37 E-value=2.8e-11 Score=121.71 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=64.3
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+......+..++..+.+|||+|+..++..|..+++.++++|+|+|.++ ........+|..+.. .
T Consensus 69 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~-----------g~~~~t~~~~~~~~~----~ 133 (528)
T 3tr5_A 69 SVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAK-----------GVEPRTIKLMEVCRL----R 133 (528)
T ss_dssp SSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTT-----------CSCHHHHHHHHHHHT----T
T ss_pred eEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCC-----------CCCHHHHHHHHHHHH----c
Confidence 4445556677788999999999999999999999999999999999997 223445666665543 3
Q ss_pred CCeEEEEeeCCCcch
Q psy14891 264 EASFILFLNKFDLFR 278 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~ 278 (359)
++|+++|+||+|+..
T Consensus 134 ~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 134 HTPIMTFINKMDRDT 148 (528)
T ss_dssp TCCEEEEEECTTSCC
T ss_pred CCCEEEEEeCCCCcc
Confidence 689999999999864
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.37 E-value=2.5e-12 Score=126.74 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=78.5
Q ss_pred EEEEeeCCceeeEEecCCccc---------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc
Q psy14891 189 ETNFRLGESIVNMVDVGGQRS---------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN 259 (359)
Q Consensus 189 ~~~~~~~~~~l~i~D~~Gq~~---------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~ 259 (359)
...+.+++..+++|||||++. ++..|..++++++++|||+|.++ .-.. .-.++..++..
T Consensus 41 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~----------~~~~--~d~~i~~~l~~ 108 (439)
T 1mky_A 41 QDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR----------GITK--EDESLADFLRK 108 (439)
T ss_dssp EEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT----------CCCH--HHHHHHHHHHH
T ss_pred eEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCC----------CCCH--HHHHHHHHHHH
Confidence 345566778899999999874 46778899999999999999875 1111 11223333322
Q ss_pred cCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHH-HHHHHHHHhhhccCCCCce-EEEEeeccCCchH
Q psy14891 260 RYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSG-ALFIQHKFALRNHNSAKVI-YPHFTTATDTSNV 337 (359)
Q Consensus 260 ~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a-~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni 337 (359)
.+.|++|++||+|+.+... .++ .+| ..+ .+ .++.+||+++.||
T Consensus 109 ---~~~p~ilv~NK~D~~~~~~---------------------~~~~~~~-----~~l------g~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 109 ---STVDTILVANKAENLREFE---------------------REVKPEL-----YSL------GFGEPIPVSAEHNINL 153 (439)
T ss_dssp ---HTCCEEEEEESCCSHHHHH---------------------HHTHHHH-----GGG------SSCSCEECBTTTTBSH
T ss_pred ---cCCCEEEEEeCCCCccccH---------------------HHHHHHH-----Hhc------CCCCEEEEeccCCCCH
Confidence 2689999999999854211 011 222 111 11 2578999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14891 338 QTVFHAVMDLVIK 350 (359)
Q Consensus 338 ~~vf~~v~~~Il~ 350 (359)
.++|+.+.+.+..
T Consensus 154 ~~L~~~i~~~l~~ 166 (439)
T 1mky_A 154 DTMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 9999999887764
No 147
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.37 E-value=6.4e-12 Score=113.36 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=56.8
Q ss_pred eeEEEEeeCCceeeEEecCC-----------ccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHH
Q psy14891 187 IIETNFRLGESIVNMVDVGG-----------QRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQ 255 (359)
Q Consensus 187 ~~~~~~~~~~~~l~i~D~~G-----------q~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~ 255 (359)
+....+.+.+..+.+|||+| ++.+++.+..++++++++|+|+|++.++. ...+++.++..
T Consensus 68 ~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~l~~~~~ 138 (239)
T 3lxx_A 68 CEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE---------EEHKATEKILK 138 (239)
T ss_dssp CEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS---------HHHHHHHHHHH
T ss_pred EEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH---------HHHHHHHHHHH
Confidence 34445566778999999999 55677778888899999999999987422 12334444444
Q ss_pred HHhccCCCCCeEEEEeeCCCcchh
Q psy14891 256 VVNNRYFREASFILFLNKFDLFRE 279 (359)
Q Consensus 256 i~~~~~~~~~~iiL~~NK~Dl~~~ 279 (359)
.+... ...|++||+||+|+...
T Consensus 139 ~~~~~--~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 139 MFGER--ARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHH--HGGGEEEEEECGGGC--
T ss_pred Hhhhh--ccceEEEEEeCCccCCc
Confidence 44322 23589999999998654
No 148
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.36 E-value=8e-12 Score=121.77 Aligned_cols=116 Identities=13% Similarity=0.066 Sum_probs=82.6
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
..+.+|||+|++.+.+.+..++..++++|+|+|.++ ..++....+++..+... ...|+++++||+|+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~----------~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANE----------PFPQPQTREHFVALGII---GVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTS----------CSSCHHHHHHHHHHHHH---TCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC----------CCCcHHHHHHHHHHHHc---CCCCEEEEEECccc
Confidence 578999999999999999999999999999999987 33355555555443221 23589999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
..... .++..+.+.+.+.... ...+.++.+||++++||..+|+.+.+.+
T Consensus 142 ~~~~~--------------------~~~~~~~i~~~l~~~~---~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 142 VSKEE--------------------ALSQYRQIKQFTKGTW---AENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp SCHHH--------------------HHHHHHHHHHHHTTST---TTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred cchHH--------------------HHHHHHHHHHHHHhhC---CCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 65321 1122223333222111 2356788999999999999999988755
No 149
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.36 E-value=6.2e-12 Score=124.45 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=68.1
Q ss_pred EEeeCCceeeEEecCCccccccchh--------hhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRRKWI--------YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~~w~--------~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.+.+++.++.+|||+|++.....|. .++++++++|+|+|.++ .... +...++..+
T Consensus 266 ~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~----------~~~~-~~~~i~~~l------ 328 (462)
T 3geh_A 266 QLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT----------GWTT-GDQEIYEQV------ 328 (462)
T ss_dssp EEEETTEEEEECC--------------------CCCCSCSEEEEEEETTT----------CSCH-HHHHHHHHH------
T ss_pred EEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC----------CCCH-HHHHHHHhc------
Confidence 3445677899999999977654433 36889999999999997 2222 223444433
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|+++|+||+|+..... .. .+. ++. ....++.+||+++.||.++|+
T Consensus 329 ~~~piivV~NK~Dl~~~~~--~~-~~~----~~~-------------------------~~~~~i~iSAktg~Gi~eL~~ 376 (462)
T 3geh_A 329 KHRPLILVMNKIDLVEKQL--IT-SLE----YPE-------------------------NITQIVHTAAAQKQGIDSLET 376 (462)
T ss_dssp TTSCEEEEEECTTSSCGGG--ST-TCC----CCT-------------------------TCCCEEEEBTTTTBSHHHHHH
T ss_pred cCCcEEEEEECCCCCcchh--hH-HHH----Hhc-------------------------cCCcEEEEECCCCCCHHHHHH
Confidence 2369999999999876443 10 110 000 123467899999999999999
Q ss_pred HHHHHHHHh
Q psy14891 343 AVMDLVIKI 351 (359)
Q Consensus 343 ~v~~~Il~~ 351 (359)
.+.+.+...
T Consensus 377 ~i~~~~~~~ 385 (462)
T 3geh_A 377 AILEIVQTG 385 (462)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHhcc
Confidence 998877543
No 150
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.36 E-value=5.2e-13 Score=134.10 Aligned_cols=116 Identities=12% Similarity=0.167 Sum_probs=80.8
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+..+.+|||+|++.|...|..+++.++++|+|+|.++ ..+..+.+.+..+.. .++|+++++||+|
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d-----------g~~~qt~e~l~~~~~----~~vPiIVViNKiD 115 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD-----------GVMKQTVESIQHAKD----AHVPIVLAINKCD 115 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS-----------CCCHHHHHHHHHHHT----TTCCEEECCBSGG
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC-----------CccHHHHHHHHHHHH----cCCcEEEEEeccc
Confidence 3568899999999999999999999999999999987 334555666655543 3679999999999
Q ss_pred cchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 276 LFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 276 l~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
+..... . .+.. . +.. +..........+.++++||+++.||.++|+.+...+
T Consensus 116 l~~~~~--~--~v~~-------------~----l~~-~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 116 KAEADP--E--KVKK-------------E----LLA-YDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp GTTTSC--C--SSSS-------------H----HHH-TTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred ccccch--H--HHHH-------------H----HHh-hhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 865322 1 0000 0 000 000000001346778899999999999999887654
No 151
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.35 E-value=2.7e-13 Score=118.99 Aligned_cols=110 Identities=11% Similarity=0.022 Sum_probs=72.6
Q ss_pred ecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHH---HHHHhccC-CCCCeEEEEeeCC-Ccc
Q psy14891 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLF---EQVVNNRY-FREASFILFLNKF-DLF 277 (359)
Q Consensus 203 D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~---~~i~~~~~-~~~~~iiL~~NK~-Dl~ 277 (359)
|+|||++.|..|.+||++++++|||+|.+| ..|+. +...+ ..+++... +.++|++||+||+ |+.
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD----------~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBT----------TCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEecccc----------HhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 678999999999999999999999999998 55553 66666 44555543 5899999999995 674
Q ss_pred hhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 278 REKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 278 ~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
. .+ +..+..+.+ .+..- .+..++.-|||++|+++.+.++-+.+.+-
T Consensus 177 ~-Am-------------------s~~EI~e~L-----~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 177 K-RM-------------------PCFYLAHEL-----HLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp C-BC-------------------CHHHHHHHT-----TGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred C-CC-------------------CHHHHHHHc-----CCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 3 22 233333221 12211 36788999999999999999987776553
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.35 E-value=9.2e-12 Score=113.67 Aligned_cols=134 Identities=13% Similarity=0.211 Sum_probs=77.4
Q ss_pred eeEEEEeeCCceeeEEecCCcccccc-----------chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHH
Q psy14891 187 IIETNFRLGESIVNMVDVGGQRSQRR-----------KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQ 255 (359)
Q Consensus 187 ~~~~~~~~~~~~l~i~D~~Gq~~~r~-----------~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~ 255 (359)
.....+..++..+.+|||+|+..+.. .+..++++++++|+|+|.+.+. ........++..
T Consensus 61 ~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~l~~ 131 (260)
T 2xtp_A 61 CSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT---------SQDQQAAQRVKE 131 (260)
T ss_dssp CEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCC---------HHHHHHHHHHHH
T ss_pred eEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC---------HHHHHHHHHHHH
Confidence 33444556778899999999876532 2233789999999999998621 112233455555
Q ss_pred HHhccCCCCCeEEEEee-CCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCc--eEEEEeecc
Q psy14891 256 VVNNRYFREASFILFLN-KFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKV--IYPHFTTAT 332 (359)
Q Consensus 256 i~~~~~~~~~~iiL~~N-K~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~--i~~~~tsA~ 332 (359)
++... . ..|+++++| |+|+....+ ..+..+ ...+++.+++.. +. .+. +..+.|||+
T Consensus 132 ~~~~~-~-~~~~i~vv~nK~Dl~~~~~-------~~~i~~-----~~~~~~~~~~~~-~~------~~~~~~~~~~~SA~ 190 (260)
T 2xtp_A 132 IFGED-A-MGHTIVLFTHKEDLNGGSL-------MDYMHD-----SDNKALSKLVAA-CG------GRICAFNNRAEGSN 190 (260)
T ss_dssp HHCGG-G-GGGEEEEEECGGGGTTCCH-------HHHHHH-----CCCHHHHHHHHH-TT------TCEEECCTTCCHHH
T ss_pred HhCch-h-hccEEEEEEcccccCCccH-------HHHHHh-----cchHHHHHHHHH-hC------CeEEEecCcccccc
Confidence 54321 1 345555555 999864322 000000 011222223322 10 010 111568999
Q ss_pred CCchHHHHHHHHHHHHHH
Q psy14891 333 DTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 333 d~~ni~~vf~~v~~~Il~ 350 (359)
++.||.++|+.+.+.+..
T Consensus 191 ~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 191 QDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHh
Confidence 999999999999988765
No 153
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.33 E-value=4.7e-12 Score=124.61 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=70.4
Q ss_pred eeCCceeeEEecCCcc--------ccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCC
Q psy14891 193 RLGESIVNMVDVGGQR--------SQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFRE 264 (359)
Q Consensus 193 ~~~~~~l~i~D~~Gq~--------~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~ 264 (359)
.+++..+.+|||||++ .++..|..++++++++|||+|.++ .... .-.++..++.. .+
T Consensus 47 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~----------~~~~--~d~~~~~~l~~---~~ 111 (436)
T 2hjg_A 47 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE----------GVTA--ADEEVAKILYR---TK 111 (436)
T ss_dssp TTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTT----------CSCH--HHHHHHHHHTT---CC
T ss_pred EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCC----------CCCH--HHHHHHHHHHH---cC
Confidence 3456789999999996 678889999999999999999886 2222 22344444432 47
Q ss_pred CeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHH
Q psy14891 265 ASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAV 344 (359)
Q Consensus 265 ~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v 344 (359)
.|++|++||+|+..... ... . |..+. . -.++.+||+++.||.++|+.+
T Consensus 112 ~pvilv~NK~D~~~~~~--~~~---~----------------------~~~lg----~-~~~~~iSA~~g~gv~~L~~~i 159 (436)
T 2hjg_A 112 KPVVLAVNKLDNTEMRA--NIY---D----------------------FYSLG----F-GEPYPISGTHGLGLGDLLDAV 159 (436)
T ss_dssp SCEEEEEECCCC-------CCC---S----------------------SGGGS----S-CCCEECBTTTTBTHHHHHHHH
T ss_pred CCEEEEEECccCccchh--hHH---H----------------------HHHcC----C-CCeEEEeCcCCCChHHHHHHH
Confidence 89999999999865322 110 0 00110 0 024789999999999999998
Q ss_pred HHHHH
Q psy14891 345 MDLVI 349 (359)
Q Consensus 345 ~~~Il 349 (359)
.+.+-
T Consensus 160 ~~~l~ 164 (436)
T 2hjg_A 160 AEHFK 164 (436)
T ss_dssp HHTGG
T ss_pred HHhcC
Confidence 87653
No 154
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.33 E-value=8.1e-12 Score=122.88 Aligned_cols=127 Identities=11% Similarity=-0.066 Sum_probs=81.8
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+.+....+...+..+.+|||+|++.|.+.+..++..++++|+|+|.++ ..+....+++..+.. .
T Consensus 90 iTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~-----------g~~~qt~~~l~~~~~---~ 155 (434)
T 1zun_B 90 ITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY-----------GVQTQTRRHSYIASL---L 155 (434)
T ss_dssp CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT-----------CSCHHHHHHHHHHHH---T
T ss_pred cEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC-----------CCcHHHHHHHHHHHH---c
Confidence 35555555666678899999999999999999999999999999999987 123344444433322 1
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
...|+++++||+|+..... ...+...+.+.+.+..... ....+.++.+||+++.||.++|.
T Consensus 156 ~~~~iIvviNK~Dl~~~~~------------------~~~~~i~~~~~~~~~~~g~-~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 156 GIKHIVVAINKMDLNGFDE------------------RVFESIKADYLKFAEGIAF-KPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp TCCEEEEEEECTTTTTSCH------------------HHHHHHHHHHHHHHHTTTC-CCSEEEEEECCTTTCTTTSSCCT
T ss_pred CCCeEEEEEEcCcCCcccH------------------HHHHHHHHHHHHHHHHhCC-CccCceEEEEeccCCCCcccccc
Confidence 2236999999999864110 0011122222222222110 01346788999999999987544
No 155
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.32 E-value=1.2e-11 Score=123.18 Aligned_cols=129 Identities=15% Similarity=0.057 Sum_probs=85.2
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+.+....+.+++..+.+|||+|++.+.+.+..++..++++|+|+|.++ ..+..+.+.+..+.. .
T Consensus 60 Ti~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~-----------g~~~qt~e~l~~~~~----~ 124 (482)
T 1wb1_A 60 TIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKE-----------GPKTQTGEHMLILDH----F 124 (482)
T ss_dssp ----CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTT-----------CSCHHHHHHHHHHHH----T
T ss_pred EEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCC-----------CccHHHHHHHHHHHH----c
Confidence 3333334455567889999999999999999999999999999999886 122333333332221 3
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
++|+++++||+|+..+... . ...++..+++... . .-..+.++.+||++++||.++++.
T Consensus 125 ~ip~IvviNK~Dl~~~~~~-~---------------~~~~~l~~~l~~~----~--~~~~~~ii~vSA~~g~gI~~L~~~ 182 (482)
T 1wb1_A 125 NIPIIVVITKSDNAGTEEI-K---------------RTEMIMKSILQST----H--NLKNSSIIPISAKTGFGVDELKNL 182 (482)
T ss_dssp TCCBCEEEECTTSSCHHHH-H---------------HHHHHHHHHHHHS----S--SGGGCCEEECCTTTCTTHHHHHHH
T ss_pred CCCEEEEEECCCcccchhH-H---------------HHHHHHHHHHhhh----c--ccccceEEEEECcCCCCHHHHHHH
Confidence 6788999999998753210 0 1122333343331 0 001356788999999999999999
Q ss_pred HHHHHH
Q psy14891 344 VMDLVI 349 (359)
Q Consensus 344 v~~~Il 349 (359)
+.+.+-
T Consensus 183 L~~~i~ 188 (482)
T 1wb1_A 183 IITTLN 188 (482)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 888663
No 156
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.32 E-value=1.3e-11 Score=112.28 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=57.1
Q ss_pred ceeEEEEeeCCceeeEEecCCc--------cccccchhhhc----cCCcEEEEEEECCCCccccccCCcccchHHHHHHH
Q psy14891 186 GIIETNFRLGESIVNMVDVGGQ--------RSQRRKWIYCF----DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLF 253 (359)
Q Consensus 186 G~~~~~~~~~~~~l~i~D~~Gq--------~~~r~~w~~~f----~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~ 253 (359)
......+..++..+.+|||+|. +.+...+..++ ++++++|+|+|++.+ .......++++
T Consensus 59 ~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~---------~~~~~~~~~~l 129 (247)
T 3lxw_A 59 ACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRF---------TAQDQQAVRQV 129 (247)
T ss_dssp SCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBC---------CHHHHHHHHHH
T ss_pred cEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC---------CHHHHHHHHHH
Confidence 3344455667889999999997 44444444444 999999999999863 12223445666
Q ss_pred HHHHhccCCCCCeEEEEeeCCCcchh
Q psy14891 254 EQVVNNRYFREASFILFLNKFDLFRE 279 (359)
Q Consensus 254 ~~i~~~~~~~~~~iiL~~NK~Dl~~~ 279 (359)
..++.. ...+.|++||+||.|+..+
T Consensus 130 ~~~~~~-~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 130 RDMFGE-DVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHCG-GGGGGEEEEEECGGGGTTC
T ss_pred HHHhCh-hhhccEEEEEEchHhcCCC
Confidence 665532 2346899999999998653
No 157
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.31 E-value=6.5e-12 Score=115.92 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=63.2
Q ss_pred cccceeEEEEee--CC--ceeeEEecCCcc-------ccccch-------hhhccC-------------CcEEEEEEECC
Q psy14891 183 RTNGIIETNFRL--GE--SIVNMVDVGGQR-------SQRRKW-------IYCFDD-------------VKAVLYVVALS 231 (359)
Q Consensus 183 ~T~G~~~~~~~~--~~--~~l~i~D~~Gq~-------~~r~~w-------~~~f~~-------------~~~iifv~dls 231 (359)
+|+++......+ ++ +++.+|||+|+. .++.++ ..|+.. +++++++++.+
T Consensus 47 ~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~ 126 (274)
T 3t5d_A 47 KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS 126 (274)
T ss_dssp --CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSC
T ss_pred CceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCC
Confidence 556655444443 33 589999999983 344444 444443 77999999876
Q ss_pred CCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHH
Q psy14891 232 GYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQH 311 (359)
Q Consensus 232 ~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~ 311 (359)
. .........+++.+.. ++|+++|+||+|+....- .+...+-+.+
T Consensus 127 ~----------~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e--------------------~~~~~~~i~~ 171 (274)
T 3t5d_A 127 G----------HGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEE--------------------CQQFKKQIMK 171 (274)
T ss_dssp C----------SSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHH--------------------HHHHHHHHHH
T ss_pred C----------CCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHH--------------------HHHHHHHHHH
Confidence 5 2222333445555432 689999999999864221 1122222333
Q ss_pred HHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 312 KFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 312 ~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
.+.. ..+.++.+||++++++.++++.+.+.
T Consensus 172 ~l~~------~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 172 EIQE------HKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHH------TTCCCCCC-----------CHHHHHT
T ss_pred HHHH------cCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 2221 23445668999999999998887654
No 158
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.30 E-value=1.4e-11 Score=125.37 Aligned_cols=110 Identities=17% Similarity=0.116 Sum_probs=79.8
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+|+..|...|..+++.++++|+|+|.++ ... ..+...|..... .+.|+++|+||+|+
T Consensus 71 ~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~----------gv~-~qt~~~~~~~~~----~~ipiIvViNKiDl 135 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQ----------GVE-AQTLANCYTAME----MDLEVVPVLNKIDL 135 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTT----------CCC-THHHHHHHHHHH----TTCEEEEEEECTTS
T ss_pred EEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCC----------CCC-HHHHHHHHHHHH----CCCCEEEeeeccCc
Confidence 789999999999999999999999999999999987 222 233444444433 36799999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
... +.+...+-+.+.| ... ...++++||+++.||..+|+.+.+.+
T Consensus 136 ~~a---------------------~~~~v~~ei~~~l-g~~-----~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 136 PAA---------------------DPERVAEEIEDIV-GID-----ATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp TTC---------------------CHHHHHHHHHHHT-CCC-----CTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred ccc---------------------cHHHHHHHHHHHh-CCC-----cceEEEeecccCCCchhHHHHHhhcC
Confidence 642 2233333344433 111 01257899999999999999888765
No 159
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.30 E-value=1.1e-11 Score=120.83 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=73.2
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
..+.+|||+|++.+.+.+......+|++|+|+|.++ ......+.+.+..+.. ....|+++++||+|+
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~----------g~~~~qt~e~l~~~~~---l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANE----------PCPQPQTKEHLMALEI---LGIDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTS----------CSSCHHHHHHHHHHHH---TTCCCEEEEEECTTS
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCC----------CCCCchhHHHHHHHHH---cCCCeEEEEEEccCC
Confidence 568999999999999888888888999999999986 1122333333332211 223589999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
....- .. ...+++.+|+... ....+.++.+||++++||..+|+.+.+.+
T Consensus 148 ~~~~~--~~--------------~~~~~i~~~l~~~-------~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 148 VDEKQ--AE--------------ENYEQIKEFVKGT-------IAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp SCTTT--TT--------------THHHHHHHHHTTS-------TTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred CCHHH--HH--------------HHHHHHHHHHhhc-------CCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 65321 00 2334444444321 11346678899999999999999887754
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.29 E-value=3.2e-11 Score=117.27 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=86.1
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+++....+..++..+.+|||+|++.|.+.+..+++.++++|+|+|.++ ..+..+.+.+..+..
T Consensus 52 iTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~-----------g~~~qt~e~l~~~~~---- 116 (397)
T 1d2e_A 52 ITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAAND-----------GPMPQTREHLLLARQ---- 116 (397)
T ss_dssp EEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTT-----------CSCHHHHHHHHHHHH----
T ss_pred cEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCC-----------CCCHHHHHHHHHHHH----
Confidence 45555455566677899999999999999999999999999999999987 223445555533322
Q ss_pred CCCe-EEEEeeCCCcch-h-hhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCch---
Q psy14891 263 REAS-FILFLNKFDLFR-E-KILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSN--- 336 (359)
Q Consensus 263 ~~~~-iiL~~NK~Dl~~-~-k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~n--- 336 (359)
.++| +++++||+|+.. + .+ . .-.+++.+++.. ..- ....+.++++||+++.|
T Consensus 117 ~~vp~iivviNK~Dl~~~~~~~--~---------------~~~~~~~~~l~~----~~~-~~~~~~~i~~SA~~g~n~~~ 174 (397)
T 1d2e_A 117 IGVEHVVVYVNKADAVQDSEMV--E---------------LVELEIRELLTE----FGY-KGEETPIIVGSALCALEQRD 174 (397)
T ss_dssp TTCCCEEEEEECGGGCSCHHHH--H---------------HHHHHHHHHHHH----TTS-CTTTSCEEECCHHHHHTTCC
T ss_pred cCCCeEEEEEECcccCCCHHHH--H---------------HHHHHHHHHHHH----cCC-CcccCcEEEeehhhcccccC
Confidence 3677 789999999863 1 11 0 011233334332 111 11246678999999775
Q ss_pred -------HHHHHHHHHHHH
Q psy14891 337 -------VQTVFHAVMDLV 348 (359)
Q Consensus 337 -------i~~vf~~v~~~I 348 (359)
|..+|+.+.+.+
T Consensus 175 ~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 175 PELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TTTTHHHHHHHHHHHHHHS
T ss_pred CCccCCcHHHHHHHHHHhC
Confidence 888888776643
No 161
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.29 E-value=3.6e-11 Score=122.29 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=80.0
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
+.+++|||+|+..|...|..+++.++++|+|+|.++ ... ..+...|..... .+.|+++|+||+|+
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~----------gv~-~qt~~~~~~a~~----~~ipiIvviNKiDl 137 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQ----------GIE-AQTVANFWKAVE----QDLVIIPVINKIDL 137 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTT----------BCC-HHHHHHHHHHHH----TTCEEEEEEECTTS
T ss_pred EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCC----------Ccc-HHHHHHHHHHHH----CCCCEEEEEeccCc
Confidence 688999999999999999999999999999999997 222 344455544443 36899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
.... .+...+-+.+.+ .+ ....++++||+++.||..+|+.+.+.+-
T Consensus 138 ~~a~---------------------~~~v~~el~~~l-g~-----~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 138 PSAD---------------------VDRVKKQIEEVL-GL-----DPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp TTCC---------------------HHHHHHHHHHTS-CC-----CGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cccC---------------------HHHHHHHHHHhh-CC-----CcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 6422 233333333322 10 1112578999999999999999887653
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.29 E-value=3.2e-11 Score=117.57 Aligned_cols=79 Identities=13% Similarity=0.207 Sum_probs=59.7
Q ss_pred cceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCC
Q psy14891 185 NGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFRE 264 (359)
Q Consensus 185 ~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~ 264 (359)
+......+...+..+.+|||+|++.|.+.+..+++.++++|+|+|.++ ..+....+++..+.. .+
T Consensus 63 i~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~-----------g~~~qt~~~l~~~~~----~~ 127 (405)
T 2c78_A 63 INTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ----VG 127 (405)
T ss_dssp CSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTT-----------CCCHHHHHHHHHHHH----TT
T ss_pred EEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCC-----------CCcHHHHHHHHHHHH----cC
Confidence 333344455567889999999999999999999999999999999987 223445555554432 25
Q ss_pred Ce-EEEEeeCCCcch
Q psy14891 265 AS-FILFLNKFDLFR 278 (359)
Q Consensus 265 ~~-iiL~~NK~Dl~~ 278 (359)
+| +++++||+|+..
T Consensus 128 ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 128 VPYIVVFMNKVDMVD 142 (405)
T ss_dssp CCCEEEEEECGGGCC
T ss_pred CCEEEEEEECccccC
Confidence 77 899999999863
No 163
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.1e-11 Score=126.90 Aligned_cols=131 Identities=13% Similarity=0.046 Sum_probs=81.9
Q ss_pred ccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCC
Q psy14891 184 TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFR 263 (359)
Q Consensus 184 T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~ 263 (359)
|+.+....+...+..+.+|||+|++.+.+.+..++++++++|+|+|.++-. .|.. ......+...+... . ...
T Consensus 232 Tid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~---~e~~-~~~~~qt~e~l~~~-~--~lg 304 (611)
T 3izq_1 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA---FESG-FDLDGQTKEHMLLA-S--SLG 304 (611)
T ss_dssp CCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH---HHTT-CCTTSHHHHHHHHH-H--TTT
T ss_pred eEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc---cccc-chhhhHHHHHHHHH-H--HcC
Confidence 444445566677889999999999999999999999999999999998510 0000 00111222222222 1 122
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHH
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTV 340 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~v 340 (359)
..|++|++||+|+..... ...+++.+.+...+..+... ...+.++.+||+++.||.++
T Consensus 305 i~~iIVVvNKiDl~~~~~------------------~~~~ei~~~l~~~l~~~g~~-~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 305 IHNLIIAMNKMDNVDWSQ------------------QRFEEIKSKLLPYLVDIGFF-EDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CCEEEEEEECTTTTTTCH------------------HHHHHHHHHHHHHHHHHTCC-GGGCEEEECCTTTCTTTSSC
T ss_pred CCeEEEEEecccccchhH------------------HHHHHHHHHHHHHHHhhccc-ccCccEEeeecccCCCcccc
Confidence 346999999999865211 12344444444443333211 12467889999999999865
No 164
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.29 E-value=4e-12 Score=126.24 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=67.7
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
..|+++....+..++..+.+|||+|++.|.+.+..++..++++|+|+|.++-. .|. +.+....+.+.+.....
T Consensus 106 giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~---~e~-sf~~~~qt~e~l~~~~~--- 178 (467)
T 1r5b_A 106 GKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGE---FEA-GFERGGQTREHAVLART--- 178 (467)
T ss_dssp -------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTH---HHH-TTSTTCCHHHHHHHHHH---
T ss_pred CceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCc---ccc-ccCCCCcHHHHHHHHHH---
Confidence 45666655667777889999999999999999999999999999999998710 000 00000112222222211
Q ss_pred CCCCe-EEEEeeCCCcch-----hhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc
Q psy14891 262 FREAS-FILFLNKFDLFR-----EKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS 335 (359)
Q Consensus 262 ~~~~~-iiL~~NK~Dl~~-----~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ 335 (359)
.++| +++++||+|+.. ++. . ...++..+++...+ .+. ....+.++.+||+++.
T Consensus 179 -~~vp~iivviNK~Dl~~~~~~~~~~--~---------------~i~~e~~~~l~~~~-g~~--~~~~~~~i~vSA~~g~ 237 (467)
T 1r5b_A 179 -QGINHLVVVINKMDEPSVQWSEERY--K---------------ECVDKLSMFLRRVA-GYN--SKTDVKYMPVSAYTGQ 237 (467)
T ss_dssp -TTCSSEEEEEECTTSTTCSSCHHHH--H---------------HHHHHHHHHHHHHH-CCC--HHHHEEEEECBTTTTB
T ss_pred -cCCCEEEEEEECccCCCccccHHHH--H---------------HHHHHHHHHHHHhc-CCC--ccCCceEEeccccccc
Confidence 3566 999999999853 111 0 11223444443320 000 0024778899999999
Q ss_pred hHHHHH
Q psy14891 336 NVQTVF 341 (359)
Q Consensus 336 ni~~vf 341 (359)
||.++|
T Consensus 238 ~i~~l~ 243 (467)
T 1r5b_A 238 NVKDRV 243 (467)
T ss_dssp TTSSCC
T ss_pred cccccc
Confidence 998766
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.29 E-value=3.6e-12 Score=125.45 Aligned_cols=129 Identities=13% Similarity=0.088 Sum_probs=77.4
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchH-------HHHHHHHH
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLD-------ESLNLFEQ 255 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~-------es~~~~~~ 255 (359)
.|+.+....+...+..+.+|||+|++.|.+.+..+++.++++|+|+|.++ .+++ ...+.+..
T Consensus 70 iTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-----------gsfe~~~~~~~qt~~~~~~ 138 (435)
T 1jny_A 70 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-----------GEYEAGMSVEGQTREHIIL 138 (435)
T ss_dssp -------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-----------THHHHHHSTTCHHHHHHHH
T ss_pred ceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-----------CccccccccchHHHHHHHH
Confidence 45555555666677899999999999999999999999999999999986 2222 12222222
Q ss_pred HHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCc
Q psy14891 256 VVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTS 335 (359)
Q Consensus 256 i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ 335 (359)
... ..-.|+++++||+|+..... .. ...+...+.+.+.+....-. ...+.++.+||++++
T Consensus 139 ~~~---~~~~~iivviNK~Dl~~~~~--~~--------------~~~~~~~~~i~~~~~~~~~~-~~~~~~i~iSA~~g~ 198 (435)
T 1jny_A 139 AKT---MGLDQLIVAVNKMDLTEPPY--DE--------------KRYKEIVDQVSKFMRSYGFN-TNKVRFVPVVAPSGD 198 (435)
T ss_dssp HHH---TTCTTCEEEEECGGGSSSTT--CH--------------HHHHHHHHHHHHHHHHTTCC-CTTCEEEECBTTTTB
T ss_pred HHH---cCCCeEEEEEEcccCCCccc--cH--------------HHHHHHHHHHHHHHHHcCCC-cCCceEEEeecccCc
Confidence 111 12246899999999865110 00 01122233333322222111 124678899999999
Q ss_pred hHHHHHH
Q psy14891 336 NVQTVFH 342 (359)
Q Consensus 336 ni~~vf~ 342 (359)
||.+++.
T Consensus 199 ~v~e~~~ 205 (435)
T 1jny_A 199 NITHKSE 205 (435)
T ss_dssp TTTBCCS
T ss_pred ccccccc
Confidence 9976543
No 166
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.28 E-value=2.2e-12 Score=123.94 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=54.9
Q ss_pred ceeeEEecCCc-------cccccchh-------hhccCCc-------------EEEEEEECCCCccccccCCcccchHHH
Q psy14891 197 SIVNMVDVGGQ-------RSQRRKWI-------YCFDDVK-------------AVLYVVALSGYDMTLLEDSSVNRLDES 249 (359)
Q Consensus 197 ~~l~i~D~~Gq-------~~~r~~w~-------~~f~~~~-------------~iifv~dls~yd~~l~ed~~~~~l~es 249 (359)
..+++|||+|+ ++++.+|. .|+++++ +++|+++-+. .++.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~-----------~~l~~~ 163 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-----------HGLKPL 163 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS-----------SSCCHH
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC-----------CCcchh
Confidence 47899999999 88999987 7776543 4666665422 222222
Q ss_pred H-HHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEE
Q psy14891 250 L-NLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHF 328 (359)
Q Consensus 250 ~-~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~ 328 (359)
. .++..+ ..++|+|+|+||+|+...+- -. .-.+.+.+++. ...+.+++
T Consensus 164 d~~~~~~l-----~~~~piIlV~NK~Dl~~~~e--v~--------------~~k~~i~~~~~----------~~~i~~~~ 212 (361)
T 2qag_A 164 DVAFMKAI-----HNKVNIVPVIAKADTLTLKE--RE--------------RLKKRILDEIE----------EHNIKIYH 212 (361)
T ss_dssp HHHHHHHT-----CS-SCEEEEEECCSSSCHHH--HH--------------HHHHHHHHHTT----------CC-CCSCC
T ss_pred HHHHHHHh-----ccCCCEEEEEECCCCCCHHH--HH--------------HHHHHHHHHHH----------HCCCCEEe
Confidence 2 333332 24789999999999875432 00 00012222221 13466778
Q ss_pred eeccCCchHHHHHHHHHHHHHHh
Q psy14891 329 TTATDTSNVQTVFHAVMDLVIKI 351 (359)
Q Consensus 329 tsA~d~~ni~~vf~~v~~~Il~~ 351 (359)
+||+++.+ .+.|..+.+.|...
T Consensus 213 ~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 213 LPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp CC----------CHHHHHHHHHT
T ss_pred CCCcCCCc-chhHHHHHHHHHhc
Confidence 99999999 88888888887653
No 167
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.28 E-value=4.9e-11 Score=116.42 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=76.6
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
..+.+|||+|++.|.+.+......+|++|+|+|.++ .-....+.+.+..+.. ....|+++++||+|+
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~----------g~~~~qt~e~l~~~~~---~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE----------PCPRPQTREHLMALQI---IGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTS----------CSSCHHHHHHHHHHHH---HTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCC----------CCCChhHHHHHHHHHH---cCCCcEEEEEECccC
Confidence 568999999999998887777888899999999986 1112333333332211 123589999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
..... .. ...++..+|+.. . ....+.++.+||++++||..+|+.+.+.+
T Consensus 150 ~~~~~--~~--------------~~~~~i~~~l~~----~---~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 150 VDKEK--AL--------------ENYRQIKEFIEG----T---VAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp SCHHH--HH--------------HHHHHHHHHHTT----S---TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred CCHHH--HH--------------HHHHHHHHHHHh----c---CcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 65321 00 112333333321 1 01346678899999999999999887654
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.27 E-value=6.3e-12 Score=125.24 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=75.7
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
++..+.+|||+|++.|...|..++..++++|+|+|.++ ..+..+.+.+..... .++|+++++||+
T Consensus 49 ~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~-----------g~~~qT~e~l~~~~~----~~vPiIVviNKi 113 (501)
T 1zo1_I 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADD-----------GVMPQTIEAIQHAKA----AQVPVVVAVNKI 113 (501)
T ss_dssp TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTT-----------BSCTTTHHHHHHHHH----TTCCEEEEEECS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeeccc-----------CccHHHHHHHHHHHh----cCceEEEEEEec
Confidence 34578899999999999999999999999999999886 112222333333222 368999999999
Q ss_pred CcchhhhhhcCCcccc--ccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRY--YLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~--~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
|+......+-...+.. .+|+-- ...+.++++||+++.||.++|+.+..
T Consensus 114 Dl~~~~~~~v~~~l~~~~~~~~~~------------------------~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 114 DKPEADPDRVKNELSQYGILPEEW------------------------GGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SSSTTCCCCTTCCCCCCCCCTTCC------------------------SSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred cccccCHHHHHHHHHHhhhhHHHh------------------------CCCccEEEEeeeeccCcchhhhhhhh
Confidence 9865311000111111 111100 12367889999999999999988753
No 169
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.26 E-value=2.7e-11 Score=115.43 Aligned_cols=122 Identities=14% Similarity=0.170 Sum_probs=80.8
Q ss_pred EeeCC-ceeeEEecCCcc----ccccchhhhcc---CCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc-cCC
Q psy14891 192 FRLGE-SIVNMVDVGGQR----SQRRKWIYCFD---DVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN-RYF 262 (359)
Q Consensus 192 ~~~~~-~~l~i~D~~Gq~----~~r~~w~~~f~---~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~-~~~ 262 (359)
+.+.+ ..+.+|||+|+. ..+.++..|++ .++++|+|+|+++.+ ..+.+.+...|+.++... +.+
T Consensus 200 v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~-------~~~~~~~~~~~~~eL~~~~~~l 272 (342)
T 1lnz_A 200 VETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLRL 272 (342)
T ss_dssp EECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSST
T ss_pred EEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCccc-------ccChHHHHHHHHHHHHHhhhhh
Confidence 34443 789999999964 34455566655 499999999999732 124455555566665543 234
Q ss_pred CCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHH
Q psy14891 263 REASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFH 342 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~ 342 (359)
.+.|++|++||+|+..++. .+.++ .+.+. ..+.++++||++++||+++|.
T Consensus 273 ~~~p~ilV~NK~Dl~~~~e----------------------~~~~l-~~~l~-------~~~~v~~iSA~tg~gi~eL~~ 322 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEAAE----------------------NLEAF-KEKLT-------DDYPVFPISAVTREGLRELLF 322 (342)
T ss_dssp TTSCBCBEEECTTSTTHHH----------------------HHHHH-HHHCC-------SCCCBCCCSSCCSSTTHHHHH
T ss_pred cCCCEEEEEECccCCCCHH----------------------HHHHH-HHHhh-------cCCCEEEEECCCCcCHHHHHH
Confidence 6899999999999864321 11111 12111 114467899999999999999
Q ss_pred HHHHHHHH
Q psy14891 343 AVMDLVIK 350 (359)
Q Consensus 343 ~v~~~Il~ 350 (359)
.+.+.+..
T Consensus 323 ~l~~~l~~ 330 (342)
T 1lnz_A 323 EVANQLEN 330 (342)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHhh
Confidence 99887753
No 170
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.25 E-value=3.6e-12 Score=117.07 Aligned_cols=110 Identities=11% Similarity=0.029 Sum_probs=77.8
Q ss_pred ecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHH---HHHhccC-CCCCeEEEEeeC-CCcc
Q psy14891 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFE---QVVNNRY-FREASFILFLNK-FDLF 277 (359)
Q Consensus 203 D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~---~i~~~~~-~~~~~iiL~~NK-~Dl~ 277 (359)
|+|||++.|..|.+||++++|+|||||.+| ..|+. +.+.+. .+++... ..++|++|++|| +|+.
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsD----------reRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp 261 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 261 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBT----------TCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCc----------HhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence 479999999999999999999999999999 66664 555444 4555433 579999999997 5875
Q ss_pred hhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 278 REKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 278 ~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
. .+ +..+..+.+ .+..- .+..++.-|||++|+++.+.++=+.+.+-
T Consensus 262 ~-Am-------------------s~~EI~e~L-----~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 262 K-RM-------------------PCFYLAHEL-----HLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp C-BC-------------------CHHHHHHHT-----TGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred C-CC-------------------CHHHHHHHc-----CCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 3 22 233333221 12211 26788899999999999999998877653
No 171
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.25 E-value=8.9e-11 Score=107.53 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=54.4
Q ss_pred eeEEEEeeCCceeeEEecCCccccccchhhhcc---------CCcEEEEEEECCCCccccccCCcccch-HHHHHHHHHH
Q psy14891 187 IIETNFRLGESIVNMVDVGGQRSQRRKWIYCFD---------DVKAVLYVVALSGYDMTLLEDSSVNRL-DESLNLFEQV 256 (359)
Q Consensus 187 ~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~---------~~~~iifv~dls~yd~~l~ed~~~~~l-~es~~~~~~i 256 (359)
.....+..++..+.+|||+|+..++.....+++ +++++|||++++... .... ...+..+...
T Consensus 74 ~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~--------~~~~~~~~~~~l~~~ 145 (262)
T 3def_A 74 PVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA--------VDELDKQVVIAITQT 145 (262)
T ss_dssp CEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC--------CCHHHHHHHHHHHHH
T ss_pred eEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC--------CCHHHHHHHHHHHHH
Confidence 344556677889999999999988777666664 789999999987611 1111 1233333333
Q ss_pred HhccCCCCCeEEEEeeCCCcch
Q psy14891 257 VNNRYFREASFILFLNKFDLFR 278 (359)
Q Consensus 257 ~~~~~~~~~~iiL~~NK~Dl~~ 278 (359)
+... ...|+++++||+|+..
T Consensus 146 ~~~~--~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 146 FGKE--IWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HCGG--GGGGEEEEEECTTCCC
T ss_pred hchh--hhcCEEEEEeCcccCC
Confidence 3211 1248999999999853
No 172
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.25 E-value=5.5e-11 Score=121.07 Aligned_cols=135 Identities=12% Similarity=0.097 Sum_probs=82.6
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
..+++|||+|++.|...|..+++.++++|+|+|.++ .-...+...+..+.. .++|+++++||+|+
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~-----------Gv~~qT~e~l~~l~~----~~vPiIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE-----------GFKPQTQEALNILRM----YRTPFVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTT-----------CCCHHHHHHHHHHHH----TTCCEEEEEECGGG
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC-----------CccHhHHHHHHHHHH----cCCeEEEEeccccc
Confidence 358899999999999999999999999999999987 122344444444332 46899999999998
Q ss_pred chhhhhhcCCccccccccccCCCCCHH----HHHHHHHHHHhhhc---------cCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 277 FREKILYSGRHLRYYLSDFKGPDFDVD----SGALFIQHKFALRN---------HNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 277 ~~~k~~~~~~~l~~~fp~y~g~~~~~~----~a~~fi~~~f~~~~---------~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
....- . ..-..++........... +...-+...+.... +...+.+.++.+||+++.||..+++.
T Consensus 135 ~~~~~--~-~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~ 211 (594)
T 1g7s_A 135 IHGWR--V-HEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTM 211 (594)
T ss_dssp STTCC--C-CTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHH
T ss_pred ccccc--c-ccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHH
Confidence 64211 0 000011111111100111 11111112221110 01124567889999999999999999
Q ss_pred HHHHHH
Q psy14891 344 VMDLVI 349 (359)
Q Consensus 344 v~~~Il 349 (359)
+...+-
T Consensus 212 I~~~~~ 217 (594)
T 1g7s_A 212 LMGLAQ 217 (594)
T ss_dssp HHHHHH
T ss_pred HHhhcc
Confidence 887654
No 173
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.24 E-value=9.5e-11 Score=121.57 Aligned_cols=82 Identities=17% Similarity=0.079 Sum_probs=62.4
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
+|++.....+..++..+.+|||+|+..++..|..+++.++++|+|+|.++. . .......|..+..
T Consensus 63 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g----------~-~~~t~~~~~~~~~---- 127 (691)
T 1dar_A 63 ITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG----------V-EPQSETVWRQAEK---- 127 (691)
T ss_dssp ----CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTC----------S-CHHHHHHHHHHHH----
T ss_pred cccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCC----------c-chhhHHHHHHHHH----
Confidence 455555566777789999999999999999999999999999999999972 2 2334455555433
Q ss_pred CCCeEEEEeeCCCcchh
Q psy14891 263 REASFILFLNKFDLFRE 279 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~ 279 (359)
.+.|+++|+||+|+...
T Consensus 128 ~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 128 YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TTCCEEEEEECTTSTTC
T ss_pred cCCCEEEEEECCCcccC
Confidence 37899999999998653
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.23 E-value=6.3e-11 Score=117.30 Aligned_cols=121 Identities=15% Similarity=0.129 Sum_probs=78.2
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchH-------HHHHHHHH
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLD-------ESLNLFEQ 255 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~-------es~~~~~~ 255 (359)
.|+.+....+...+..+.+|||+|++.|.+.+..++..++++|+|+|.++ ..+. .+.+.+..
T Consensus 71 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~-----------g~~~~sf~~~~qt~~~~~~ 139 (458)
T 1f60_A 71 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV-----------GEFEAGISKDGQTREHALL 139 (458)
T ss_dssp CCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH-----------HHHHHHTCTTSHHHHHHHH
T ss_pred cEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCc-----------CccccccCcchhHHHHHHH
Confidence 45555555666777899999999999999999999999999999999885 1111 23333332
Q ss_pred HHhccCCCCCe-EEEEeeCCCcch---hhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeec
Q psy14891 256 VVNNRYFREAS-FILFLNKFDLFR---EKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTA 331 (359)
Q Consensus 256 i~~~~~~~~~~-iiL~~NK~Dl~~---~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA 331 (359)
... .++| +++++||+|+.. +++ . ...++..+++.. ..- ....+.++.+||
T Consensus 140 ~~~----~~v~~iivviNK~Dl~~~~~~~~--~---------------~i~~~~~~~l~~----~g~-~~~~~~~i~vSA 193 (458)
T 1f60_A 140 AFT----LGVRQLIVAVNKMDSVKWDESRF--Q---------------EIVKETSNFIKK----VGY-NPKTVPFVPISG 193 (458)
T ss_dssp HHH----TTCCEEEEEEECGGGGTTCHHHH--H---------------HHHHHHHHHHHH----HTC-CGGGCCEEECCT
T ss_pred HHH----cCCCeEEEEEEccccccCCHHHH--H---------------HHHHHHHHHHHH----cCC-CccCceEEEeec
Confidence 211 2454 999999999863 222 0 011223333332 110 012366789999
Q ss_pred cCCchHHHH
Q psy14891 332 TDTSNVQTV 340 (359)
Q Consensus 332 ~d~~ni~~v 340 (359)
+++.||.+.
T Consensus 194 ~~g~nv~~~ 202 (458)
T 1f60_A 194 WNGDNMIEA 202 (458)
T ss_dssp TTCBTTTBC
T ss_pred ccCcCcccc
Confidence 999998643
No 175
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.21 E-value=2.6e-11 Score=119.98 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=72.4
Q ss_pred eCCceeeEEecCC--------ccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCC
Q psy14891 194 LGESIVNMVDVGG--------QRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREA 265 (359)
Q Consensus 194 ~~~~~l~i~D~~G--------q~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~ 265 (359)
..+..+.+|||+| ++.++..+..++++++++|||+|.++ .+.....++..++.. .+.
T Consensus 68 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~------------~~~~~d~~l~~~l~~---~~~ 132 (456)
T 4dcu_A 68 WLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGRE------------GVTAADEEVAKILYR---TKK 132 (456)
T ss_dssp TCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSS------------CSCHHHHHHHHHHTT---CCS
T ss_pred ECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCC------------CCChHHHHHHHHHHH---cCC
Confidence 3467899999999 88999999999999999999999764 222333444455443 578
Q ss_pred eEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 266 SFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 266 ~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
|++|++||+|+..... .. .. |..+. .. ..+.+||+++.||.++|+.+.
T Consensus 133 pvilV~NK~D~~~~~~--~~---~e----------------------~~~lg---~~--~~~~iSA~~g~gv~~L~~~i~ 180 (456)
T 4dcu_A 133 PVVLAVNKLDNTEMRA--NI---YD----------------------FYSLG---FG--EPYPISGTHGLGLGDLLDAVA 180 (456)
T ss_dssp CEEEEEECC--------------CC----------------------SGGGS---SS--SEEECCTTTCTTHHHHHHHHH
T ss_pred CEEEEEECccchhhhh--hH---HH----------------------HHHcC---CC--ceEEeecccccchHHHHHHHH
Confidence 9999999999864321 00 00 00000 01 135799999999999999887
Q ss_pred HHH
Q psy14891 346 DLV 348 (359)
Q Consensus 346 ~~I 348 (359)
+.+
T Consensus 181 ~~l 183 (456)
T 4dcu_A 181 EHF 183 (456)
T ss_dssp TTG
T ss_pred hhc
Confidence 654
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.18 E-value=2.5e-10 Score=117.95 Aligned_cols=75 Identities=11% Similarity=-0.001 Sum_probs=58.6
Q ss_pred eEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE
Q psy14891 188 IETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF 267 (359)
Q Consensus 188 ~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i 267 (359)
....+..+++.+++|||+|+..++..+..+++.++++++|+|.++ .-......++..+.. .++|+
T Consensus 65 ~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~-----------g~~~qt~~~~~~~~~----~~ip~ 129 (665)
T 2dy1_A 65 GVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA-----------GVQVGTERAWTVAER----LGLPR 129 (665)
T ss_dssp EEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHHHHHHH----TTCCE
T ss_pred cceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCc-----------ccchhHHHHHHHHHH----ccCCE
Confidence 334455567899999999999999999999999999999999876 122334455555543 36899
Q ss_pred EEEeeCCCcc
Q psy14891 268 ILFLNKFDLF 277 (359)
Q Consensus 268 iL~~NK~Dl~ 277 (359)
++|+||+|+.
T Consensus 130 ilv~NKiD~~ 139 (665)
T 2dy1_A 130 MVVVTKLDKG 139 (665)
T ss_dssp EEEEECGGGC
T ss_pred EEEecCCchh
Confidence 9999999985
No 177
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.18 E-value=3.1e-10 Score=117.94 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=54.8
Q ss_pred ceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCc
Q psy14891 197 SIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDL 276 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl 276 (359)
..+++|||+|+..|...|..+++.++++|+|+|.++- ....+...|..... .+.|+++|+||+|+
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~qt~~~~~~~~~----~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-----------VQPQSETVWRQANK----YKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-----------CcHHHHHHHHHHHH----cCCCEEEEEeCCCc
Confidence 8899999999999999999999999999999999972 22334455554432 36899999999998
Q ss_pred chh
Q psy14891 277 FRE 279 (359)
Q Consensus 277 ~~~ 279 (359)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 653
No 178
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.15 E-value=2.2e-10 Score=107.18 Aligned_cols=109 Identities=22% Similarity=0.156 Sum_probs=70.2
Q ss_pred eCCceeeEEecCCcc---------ccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCC
Q psy14891 194 LGESIVNMVDVGGQR---------SQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFRE 264 (359)
Q Consensus 194 ~~~~~l~i~D~~Gq~---------~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~ 264 (359)
.++..+.+|||+|+. .++..+..+++.+++++||+|.+++ ... ..++-..+.. .+
T Consensus 53 ~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~----------~~~---~~~i~~~l~~---~~ 116 (301)
T 1ega_A 53 EGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW----------TPD---DEMVLNKLRE---GK 116 (301)
T ss_dssp ETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC----------CHH---HHHHHHHHHS---SS
T ss_pred ECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCC----------CHH---HHHHHHHHHh---cC
Confidence 356789999999997 3455667789999999999998762 111 1122222221 46
Q ss_pred CeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCce-EEEEeeccCCchHHHHHHH
Q psy14891 265 ASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVI-YPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 265 ~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i-~~~~tsA~d~~ni~~vf~~ 343 (359)
.|++|++||+|+...+. ...+.+.+ +... ..+ .++.+||+++.|+..+++.
T Consensus 117 ~P~ilvlNK~D~~~~~~----------------------~~~~~l~~-l~~~-----~~~~~~i~iSA~~g~~v~~l~~~ 168 (301)
T 1ega_A 117 APVILAVNKVDNVQEKA----------------------DLLPHLQF-LASQ-----MNFLDIVPISAETGLNVDTIAAI 168 (301)
T ss_dssp SCEEEEEESTTTCCCHH----------------------HHHHHHHH-HHTT-----SCCSEEEECCTTTTTTHHHHHHH
T ss_pred CCEEEEEECcccCccHH----------------------HHHHHHHH-HHHh-----cCcCceEEEECCCCCCHHHHHHH
Confidence 89999999999865111 01111111 1110 112 4578999999999999988
Q ss_pred HHH
Q psy14891 344 VMD 346 (359)
Q Consensus 344 v~~ 346 (359)
+..
T Consensus 169 i~~ 171 (301)
T 1ega_A 169 VRK 171 (301)
T ss_dssp HHT
T ss_pred HHH
Confidence 764
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.15 E-value=1.5e-11 Score=125.40 Aligned_cols=129 Identities=15% Similarity=0.070 Sum_probs=60.4
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+.+....+..++..+.||||+|++.|.+.+..++..++++|+|+|.++-. .|.. ......+...+..+..
T Consensus 241 iTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~g-i~~~~qt~e~l~~~~~---- 312 (592)
T 3mca_A 241 VTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN---FERG-FLENGQTREHAYLLRA---- 312 (592)
T ss_dssp ------------------CCEEESSSEEEEECCC-------CCSEEEEEECC---SSTT-SCSCSSHHHHHHHHHH----
T ss_pred eeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc---cccc-cccchHHHHHHHHHHH----
Confidence 3455555566667789999999999999999999999999999999988510 0000 0001122222222221
Q ss_pred CCCe-EEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHH-hhhccCCCCceEEEEeeccCCchHH
Q psy14891 263 REAS-FILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKF-ALRNHNSAKVIYPHFTTATDTSNVQ 338 (359)
Q Consensus 263 ~~~~-iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f-~~~~~~~~~~i~~~~tsA~d~~ni~ 338 (359)
.++| +|+++||+|+....- ...+...+.+...+ ....- ....+.++.+||+++.||.
T Consensus 313 lgip~iIvviNKiDl~~~~~------------------~~~~~i~~el~~~l~~~~g~-~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 313 LGISEIVVSVNKLDLMSWSE------------------DRFQEIKNIVSDFLIKMVGF-KTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp SSCCCEEEEEECGGGGTTCH------------------HHHHHHHHHHHHHHTTTSCC-CGGGEEEEEECSSSCSSSC
T ss_pred cCCCeEEEEEeccccccccH------------------HHHHHHHHHHHHHHHHhhCC-CccceEEEEEecccCcccc
Confidence 2444 999999999864111 11223333333333 11111 1135678899999999997
No 180
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.14 E-value=4.4e-10 Score=116.61 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=62.4
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|++.....+.+++..+.+|||+|+..+...|..+++.++++|+|+|.++ . ........|..+..
T Consensus 61 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~----------g-~~~~~~~~~~~~~~---- 125 (693)
T 2xex_A 61 ITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQS----------G-VEPQTETVWRQATT---- 125 (693)
T ss_dssp ---CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTT----------B-SCHHHHHHHHHHHH----
T ss_pred ceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCC----------C-CcHHHHHHHHHHHH----
Confidence 45555556667778999999999999999999999999999999999987 2 22344555655443
Q ss_pred CCCeEEEEeeCCCcch
Q psy14891 263 REASFILFLNKFDLFR 278 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~ 278 (359)
.+.|+++|+||+|+..
T Consensus 126 ~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 126 YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp TTCCEEEEEECTTSTT
T ss_pred cCCCEEEEEECCCccc
Confidence 3689999999999864
No 181
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.13 E-value=1.1e-09 Score=110.26 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=60.6
Q ss_pred cccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 183 RTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 183 ~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
.|+......+..++..+.+|||+|++.|+..+..+++.++++|+|+|.++- -......++... . .
T Consensus 68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g-----------~~~~t~~~~~~~-~---~ 132 (529)
T 2h5e_A 68 ISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG-----------VEDRTRKLMEVT-R---L 132 (529)
T ss_dssp --CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-----------SCHHHHHHHHHH-T---T
T ss_pred cceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc-----------chHHHHHHHHHH-H---H
Confidence 344445566777889999999999999999999999999999999999872 112233344333 2 2
Q ss_pred CCCeEEEEeeCCCcch
Q psy14891 263 REASFILFLNKFDLFR 278 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~ 278 (359)
.++|+++|+||+|+..
T Consensus 133 ~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 133 RDTPILTFMNKLDRDI 148 (529)
T ss_dssp TTCCEEEEEECTTSCC
T ss_pred cCCCEEEEEcCcCCcc
Confidence 4789999999999864
No 182
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.13 E-value=1e-09 Score=100.82 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=48.8
Q ss_pred EEeeCCceeeEEecCCccccccchh-------hh--ccCCcEEEEEEECCCCccccccCCcccchHH-HHHHHHHHHhcc
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRRKWI-------YC--FDDVKAVLYVVALSGYDMTLLEDSSVNRLDE-SLNLFEQVVNNR 260 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~~w~-------~~--f~~~~~iifv~dls~yd~~l~ed~~~~~l~e-s~~~~~~i~~~~ 260 (359)
.+..++..+.+|||+|+..+..... .| +++++++|||+|++.. ++.. ...++..+....
T Consensus 81 ~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-----------~~~~~~~~~~~~l~~~~ 149 (270)
T 1h65_A 81 SRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-----------RVDNLDKLVAKAITDSF 149 (270)
T ss_dssp EEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-----------CCCHHHHHHHHHHHHHH
T ss_pred EEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-----------cCCHHHHHHHHHHHHHh
Confidence 3445678899999999987653322 22 3479999999998751 2222 234444443210
Q ss_pred -CCCCCeEEEEeeCCCcch
Q psy14891 261 -YFREASFILFLNKFDLFR 278 (359)
Q Consensus 261 -~~~~~~iiL~~NK~Dl~~ 278 (359)
.....|+++++||+|+..
T Consensus 150 ~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 150 GKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp CGGGGGGEEEEEECCSCCC
T ss_pred CcccccCEEEEEECcccCC
Confidence 001269999999999854
No 183
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.11 E-value=1.5e-10 Score=107.45 Aligned_cols=112 Identities=14% Similarity=0.094 Sum_probs=70.6
Q ss_pred CceeeEEecCCcc-------------ccccchhhhccCCcEEE-EEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 196 ESIVNMVDVGGQR-------------SQRRKWIYCFDDVKAVL-YVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 196 ~~~l~i~D~~Gq~-------------~~r~~w~~~f~~~~~ii-fv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
...+.+|||+|+. .++.++..|+++++++| +|+|.++ .-...+...++..+.
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~----------~~~~~~~~~~~~~~~---- 189 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS----------DLANSDALKIAKEVD---- 189 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS----------CGGGCHHHHHHHHHC----
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCc----------chhhhHHHHHHHHhC----
Confidence 4789999999964 45677888999988776 7999876 111223333444432
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
..+.|+++|+||+|+..+.. .. .+.+...+..+ ......++.+||+++.|+..+|
T Consensus 190 ~~~~~~i~V~NK~Dl~~~~~------------------~~----~~~~~~~~~~~---~~~~~~v~~~SA~~~~gi~~l~ 244 (299)
T 2aka_B 190 PQGQRTIGVITKLDLMDEGT------------------DA----RDVLENKLLPL---RRGYIGVVNRSQKDIDGKKDIT 244 (299)
T ss_dssp TTCSSEEEEEECGGGSCTTC------------------CC----HHHHTTCSSCC---TTCEEECCCCCCBCTTSCBCHH
T ss_pred CCCCeEEEEEEccccCCCCc------------------hH----HHHHhCCcCcC---CCCcEEEECCChhhccccccHH
Confidence 24689999999999865321 00 11111100000 0012345679999999999999
Q ss_pred HHHHH
Q psy14891 342 HAVMD 346 (359)
Q Consensus 342 ~~v~~ 346 (359)
+.+.+
T Consensus 245 ~~l~~ 249 (299)
T 2aka_B 245 AALAA 249 (299)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88776
No 184
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.09 E-value=6.5e-10 Score=119.01 Aligned_cols=122 Identities=11% Similarity=0.087 Sum_probs=80.4
Q ss_pred EEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCe-EE
Q psy14891 190 TNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREAS-FI 268 (359)
Q Consensus 190 ~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~-ii 268 (359)
..+..++..+.+|||+|++.|.+.+..+++.++++|+|+|.++- .+..+.+++..+.. .++| +|
T Consensus 352 v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG-----------v~~QTrEhL~ll~~----lgIP~II 416 (1289)
T 3avx_A 352 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-----------PMPQTREHILLGRQ----VGVPYII 416 (1289)
T ss_dssp EEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC-----------SCTTHHHHHHHHHH----HTCSCEE
T ss_pred EEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc-----------CcHHHHHHHHHHHH----cCCCeEE
Confidence 34455668899999999999999999999999999999999871 12233444433322 2567 88
Q ss_pred EEeeCCCcchh--hhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCC--------chHH
Q psy14891 269 LFLNKFDLFRE--KILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDT--------SNVQ 338 (359)
Q Consensus 269 L~~NK~Dl~~~--k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~--------~ni~ 338 (359)
+++||+|+... ++ . ...+++.+++.. ..- ....+.++.+||+++ ++|.
T Consensus 417 VVINKiDLv~d~e~l--e---------------~i~eEi~elLk~----~G~-~~~~vp~IpvSAktG~ng~~~w~eGI~ 474 (1289)
T 3avx_A 417 VFLNKCDMVDDEELL--E---------------LVEMEVRELLSQ----YDF-PGDDTPIVRGSALKALEGDAEWEAKIL 474 (1289)
T ss_dssp EEEECCTTCCCHHHH--H---------------HHHHHHHHHHHH----TTS-CTTTCCEEECCSTTTTTCCHHHHHHHH
T ss_pred EEEeecccccchhhH--H---------------HHHHHHHHHHHh----ccc-cccceeEEEEEeccCCCCCccccccch
Confidence 99999998641 11 0 011233333332 110 113467789999999 5688
Q ss_pred HHHHHHHHHH
Q psy14891 339 TVFHAVMDLV 348 (359)
Q Consensus 339 ~vf~~v~~~I 348 (359)
.+|+.+.+.+
T Consensus 475 eLleaL~~~I 484 (1289)
T 3avx_A 475 ELAGFLDSYI 484 (1289)
T ss_dssp HHHHHHHHTS
T ss_pred hhHhHHhhhc
Confidence 8888776543
No 185
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.09 E-value=1.1e-09 Score=95.91 Aligned_cols=112 Identities=7% Similarity=-0.000 Sum_probs=68.3
Q ss_pred eeeEEecCCccc----------cccchhhhc---cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCC
Q psy14891 198 IVNMVDVGGQRS----------QRRKWIYCF---DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFRE 264 (359)
Q Consensus 198 ~l~i~D~~Gq~~----------~r~~w~~~f---~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~ 264 (359)
.+.+||++|+.. +++....|+ ..++++++|+|+++ ..+..+ ..+..++. ..+
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~----------~~~~~~--~~~~~~~~---~~~ 137 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH----------PLKDLD--QQMIEWAV---DSN 137 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS----------CCCHHH--HHHHHHHH---HTT
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC----------CCchhH--HHHHHHHH---HcC
Confidence 577999999842 233333455 57899999999986 222211 11112222 136
Q ss_pred CeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHH
Q psy14891 265 ASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAV 344 (359)
Q Consensus 265 ~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v 344 (359)
.|+++++||+|+..... .. ...+.+..++.+ ....+....|||+|+.++.++|+.+
T Consensus 138 ~~~~~v~nK~D~~s~~~--~~--------------~~~~~~~~~~~~--------~~~~~~~~~~Sal~~~~~~~l~~~l 193 (210)
T 1pui_A 138 IAVLVLLTKADKLASGA--RK--------------AQLNMVREAVLA--------FNGDVQVETFSSLKKQGVDKLRQKL 193 (210)
T ss_dssp CCEEEEEECGGGSCHHH--HH--------------HHHHHHHHHHGG--------GCSCEEEEECBTTTTBSHHHHHHHH
T ss_pred CCeEEEEecccCCCchh--HH--------------HHHHHHHHHHHh--------cCCCCceEEEeecCCCCHHHHHHHH
Confidence 78999999999764321 00 112333333321 1234667889999999999999988
Q ss_pred HHHH
Q psy14891 345 MDLV 348 (359)
Q Consensus 345 ~~~I 348 (359)
.+.+
T Consensus 194 ~~~~ 197 (210)
T 1pui_A 194 DTWF 197 (210)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 186
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.99 E-value=8.9e-09 Score=106.84 Aligned_cols=125 Identities=15% Similarity=0.214 Sum_probs=78.9
Q ss_pred ceeeEEecCCccc---cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeC
Q psy14891 197 SIVNMVDVGGQRS---QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNK 273 (359)
Q Consensus 197 ~~l~i~D~~Gq~~---~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK 273 (359)
..+.+|||+|... ....+..|++++++||||+|.++ .....+ ...|...+.. .+.|+++|+||
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~----------~~s~~e-~~~l~~~l~~---~~~~iiiVlNK 239 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ----------PCTLGE-RRYLENYIKG---RGLTVFFLVNA 239 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTS----------TTCHHH-HHHHHHHTTT---SCCCEEEEEEC
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCC----------ccchhH-HHHHHHHHHh---hCCCEEEEEEC
Confidence 4699999999765 45677889999999999999886 233333 3344433332 25689999999
Q ss_pred CCcchhhhhhcCCccccccccccCCCCC---HHHHHHHHHHH----HhhhccC---CCCceEEEEeecc-----------
Q psy14891 274 FDLFREKILYSGRHLRYYLSDFKGPDFD---VDSGALFIQHK----FALRNHN---SAKVIYPHFTTAT----------- 332 (359)
Q Consensus 274 ~Dl~~~k~~~~~~~l~~~fp~y~g~~~~---~~~a~~fi~~~----f~~~~~~---~~~~i~~~~tsA~----------- 332 (359)
+|+..... .. + .+ .+.+.+.+.+. ....... ......++++||+
T Consensus 240 ~Dl~~~~~--~~------------~-ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 240 WDQVRESL--ID------------P-DDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp GGGGGGGC--SS------------T-TCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred cccccccc--cC------------h-hhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 99875432 00 0 12 22222233322 2211110 0112346789999
Q ss_pred ---CCchHHHHHHHHHHHHHH
Q psy14891 333 ---DTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 333 ---d~~ni~~vf~~v~~~Il~ 350 (359)
++.|+..++..+.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 187
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.92 E-value=1.2e-09 Score=102.17 Aligned_cols=110 Identities=13% Similarity=0.104 Sum_probs=59.0
Q ss_pred ceeeEEecCCc-------cccccchh-------hhccCCc-------------EEEEEEECCCCccccccCCcccchHHH
Q psy14891 197 SIVNMVDVGGQ-------RSQRRKWI-------YCFDDVK-------------AVLYVVALSGYDMTLLEDSSVNRLDES 249 (359)
Q Consensus 197 ~~l~i~D~~Gq-------~~~r~~w~-------~~f~~~~-------------~iifv~dls~yd~~l~ed~~~~~l~es 249 (359)
..+++||++|+ ++++.++. .|+++.+ +++|+.+.+. .++...
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-----------~~Ld~~ 144 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-----------HGLKPL 144 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-----------SSCCHH
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-----------cCCCHH
Confidence 57899999999 67777766 6665433 3555555432 111111
Q ss_pred -HHHHHHHHhccCCCCCeEEEEeeCCCcchhh-hhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEE
Q psy14891 250 -LNLFEQVVNNRYFREASFILFLNKFDLFREK-ILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPH 327 (359)
Q Consensus 250 -~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k-~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~ 327 (359)
.+++..+. .++|+++|+||.|+..++ + . ...+++.+++.. ..+.++
T Consensus 145 ~~~~l~~l~-----~~~~iilV~~K~Dl~~~~e~--~---------------~~~~~~~~~~~~----------~~~~~~ 192 (301)
T 2qnr_A 145 DVAFMKAIH-----NKVNIVPVIAKADTLTLKER--E---------------RLKKRILDEIEE----------HNIKIY 192 (301)
T ss_dssp HHHHHHHHT-----TTSCEEEEECCGGGSCHHHH--H---------------HHHHHHHHHHHH----------TTCCCC
T ss_pred HHHHHHHHH-----hcCCEEEEEEeCCCCCHHHH--H---------------HHHHHHHHHHHH----------cCCeEE
Confidence 23333331 357999999999987532 2 0 123455666554 346678
Q ss_pred EeeccCCchHHHHHHHHHHHHHH
Q psy14891 328 FTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 328 ~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
++||+++ ||.++|..+.+.+..
T Consensus 193 e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 193 HLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp CCC----------CHHHHHHHHT
T ss_pred ecCCccc-cccHHHHHHHHHhhc
Confidence 8999999 999999999988764
No 188
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.89 E-value=3.2e-08 Score=87.38 Aligned_cols=107 Identities=9% Similarity=-0.030 Sum_probs=70.1
Q ss_pred CCceeeEEecCCccccccchhhhc-cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCF-DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNK 273 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f-~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK 273 (359)
.+..+.+|||+|+-.. +.++ .+.+++|+|+|.++.+. .. ..+... .+.|+++++||
T Consensus 107 ~~~d~iiidt~G~~~~----~~~~~~~~~~~i~vvd~~~~~~---------~~----~~~~~~------~~~~~iiv~NK 163 (221)
T 2wsm_A 107 SDCDLLLIENVGNLIC----PVDFDLGENYRVVMVSVTEGDD---------VV----EKHPEI------FRVADLIVINK 163 (221)
T ss_dssp TTCSEEEEEEEEBSSG----GGGCCCSCSEEEEEEEGGGCTT---------HH----HHCHHH------HHTCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----CchhccccCcEEEEEeCCCcch---------hh----hhhhhh------hhcCCEEEEec
Confidence 3467889999996211 1222 35788999999886211 11 111111 14688999999
Q ss_pred CCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHHH
Q psy14891 274 FDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVIK 350 (359)
Q Consensus 274 ~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il~ 350 (359)
+|+....- .+.+++.+++... + ....++.+||++++|+..+|+.+.+.+..
T Consensus 164 ~Dl~~~~~------------------~~~~~~~~~~~~~----~----~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 164 VALAEAVG------------------ADVEKMKADAKLI----N----PRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp GGGHHHHT------------------CCHHHHHHHHHHH----C----TTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred ccCCcchh------------------hHHHHHHHHHHHh----C----CCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 99865432 3566666666542 1 23567889999999999999999887643
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=4.2e-09 Score=102.75 Aligned_cols=58 Identities=16% Similarity=0.023 Sum_probs=24.0
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
++|+|+|+||+|+...+-. . .-.+.+.+++.. ..+.++++||++++|+..+|..
T Consensus 167 ~v~iIlVinK~Dll~~~ev-~---------------~~k~~i~~~~~~----------~~i~~~~~sa~~~~~v~~~~~~ 220 (418)
T 2qag_C 167 KVNIIPLIAKADTLTPEEC-Q---------------QFKKQIMKEIQE----------HKIKIYEFPETDDEEENKLVKK 220 (418)
T ss_dssp TSEEEEEEESTTSSCHHHH-H---------------HHHHHHHHHHHH----------HTCCCCCCC-------------
T ss_pred cCcEEEEEEcccCccHHHH-H---------------HHHHHHHHHHHH----------cCCeEEeCCCCCCcCHHHHHHH
Confidence 6899999999998653220 0 001334444443 2345667899999999988877
Q ss_pred HHHH
Q psy14891 344 VMDL 347 (359)
Q Consensus 344 v~~~ 347 (359)
+.+.
T Consensus 221 l~~~ 224 (418)
T 2qag_C 221 IKDR 224 (418)
T ss_dssp ----
T ss_pred HHhh
Confidence 7654
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.87 E-value=2.4e-08 Score=97.30 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=71.1
Q ss_pred ceeeEEecCCccc----cccchhhh---ccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhc-cCCCCCeEE
Q psy14891 197 SIVNMVDVGGQRS----QRRKWIYC---FDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN-RYFREASFI 268 (359)
Q Consensus 197 ~~l~i~D~~Gq~~----~r~~w~~~---f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~-~~~~~~~ii 268 (359)
..+.+||++|... .+.+...+ .+.++.+++++|+++ ..+.+...+..++... +.+...|.+
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~-----------~~~~~ls~g~~el~~la~aL~~~P~I 273 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAAD-----------EPLKTLETLRKEVGAYDPALLRRPSL 273 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTS-----------CHHHHHHHHHHHHHHHCHHHHHSCEE
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCcc-----------CCHHHHHHHHHHHHHHhHHhhcCCEE
Confidence 6788999999742 22333333 357999999999971 2233333333333221 223457899
Q ss_pred EEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 269 LFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 269 L~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
|++||+|+..... .+...+++.. ..+.++++||+++++|+++|+.+.+.+
T Consensus 274 LVlNKlDl~~~~~--------------------~~~l~~~l~~----------~g~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 274 VALNKVDLLEEEA--------------------VKALADALAR----------EGLAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp EEEECCTTSCHHH--------------------HHHHHHHHHT----------TTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEECCChhhHHH--------------------HHHHHHHHHh----------cCCeEEEEECCCccCHHHHHHHHHHHH
Confidence 9999999864311 1222222211 234567899999999999999999887
Q ss_pred HH
Q psy14891 349 IK 350 (359)
Q Consensus 349 l~ 350 (359)
..
T Consensus 324 ~~ 325 (416)
T 1udx_A 324 RS 325 (416)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 191
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.87 E-value=1.3e-08 Score=107.72 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=55.6
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
+..+++|||+|+..|+..|..+++.++++|+|+|.++ .... .....|..... .++|+++|+||+|
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~----------g~~~-qt~~~~~~~~~----~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE----------GVCV-QTETVLRQALG----ERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT----------BSCH-HHHHHHHHHHH----TTCEEEEEEECHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCC----------CCCH-HHHHHHHHHHH----cCCCeEEEEECCC
Confidence 4789999999999999999999999999999999997 2232 33455555443 3689999999999
Q ss_pred cchh
Q psy14891 276 LFRE 279 (359)
Q Consensus 276 l~~~ 279 (359)
+...
T Consensus 162 ~~~~ 165 (842)
T 1n0u_A 162 RALL 165 (842)
T ss_dssp HHHH
T ss_pred cchh
Confidence 8743
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.85 E-value=1.5e-08 Score=96.96 Aligned_cols=113 Identities=12% Similarity=-0.011 Sum_probs=70.7
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.+..+.+|||+|-.. -.......++.+|+|+|.+.-++. ..+ . ....+.|+++++||+
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~-------~~l-----------~-~~~~~~p~ivVlNK~ 227 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQL-------QGI-----------K-KGVLELADIVVVNKA 227 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTT-------TTC-----------C-TTSGGGCSEEEEECC
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccH-------HHH-----------H-HhHhhcCCEEEEECC
Confidence 567899999999432 233445899999999997763221 000 0 112345899999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCC-CCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNS-AKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~-~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
|+..+.- .+...+.+...+....... .....++.+||++++||.++++.+.+.+-
T Consensus 228 Dl~~~~~--------------------~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 228 DGEHHKE--------------------ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp CGGGHHH--------------------HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred CCcChhH--------------------HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 9865322 2223333333322222111 12345678999999999999999988764
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.85 E-value=4.5e-09 Score=100.65 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=51.9
Q ss_pred CceeeEEecCCcccc-------------ccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 196 ESIVNMVDVGGQRSQ-------------RRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~-------------r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
...+.+|||+|+.+. +.+...|+++++++|+|+|.++-+ ....+++.+...+. .
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~---------~~~~~~~~l~~~~~----~ 201 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKISREVD----P 201 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSC---------GGGCHHHHHHHHSC----T
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCC---------cCCHHHHHHHHHhc----c
Confidence 468999999999886 677888999999999999876511 11133344444432 2
Q ss_pred CCCeEEEEeeCCCcchh
Q psy14891 263 REASFILFLNKFDLFRE 279 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~~ 279 (359)
.+.|+++++||+|+..+
T Consensus 202 ~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 202 SGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp TCTTEEEEEECGGGCCT
T ss_pred cCCCEEEEEeCCccCCC
Confidence 46799999999998753
No 194
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.72 E-value=6.6e-08 Score=85.64 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=45.1
Q ss_pred CCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 264 EASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 264 ~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
+.|.++++||+|+..++. .+.+++.+++... .....+++|||++++||.++|+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~------------------~~~~~~~~~~~~~--------~~~~~~~~~Sa~~g~gv~~l~~~ 217 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVG------------------ADIKKMENDAKRI--------NPDAEVVLLSLKTMEGFDKVLEF 217 (226)
T ss_dssp TTCSEEEEECGGGHHHHT------------------CCHHHHHHHHHHH--------CTTSEEEECCTTTCTTHHHHHHH
T ss_pred hcCCEEEEeccccCchhH------------------HHHHHHHHHHHHh--------CCCCeEEEEEecCCCCHHHHHHH
Confidence 368899999999876432 3456666666541 12356788999999999999999
Q ss_pred HHHHHHH
Q psy14891 344 VMDLVIK 350 (359)
Q Consensus 344 v~~~Il~ 350 (359)
+.+.+..
T Consensus 218 l~~~~~~ 224 (226)
T 2hf9_A 218 IEKSVKE 224 (226)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9877643
No 195
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.72 E-value=3.4e-08 Score=92.32 Aligned_cols=98 Identities=11% Similarity=0.007 Sum_probs=68.3
Q ss_pred CccccccchhhhccCCcEEEEEEECCCCccccccCCccc-chHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhc
Q psy14891 206 GQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVN-RLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYS 284 (359)
Q Consensus 206 Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~-~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~ 284 (359)
.|++++.+...++++++++|+|+|+++ .. ++...-.|+.. +.. .++|++|++||+|+..+..
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~----------p~~s~~~l~~~l~~-~~~---~~~~~ilV~NK~DL~~~~~--- 127 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKM----------PEFNNYLLDNMLVV-YEY---FKVEPVIVFNKIDLLNEEE--- 127 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTT----------TTCCHHHHHHHHHH-HHH---TTCEEEEEECCGGGCCHHH---
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCC----------CCCCHHHHHHHHHH-HHh---CCCCEEEEEEcccCCCccc---
Confidence 488999999999999999999999997 32 33322233332 222 5789999999999865321
Q ss_pred CCccccccccccCCCCC-HHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHH
Q psy14891 285 GRHLRYYLSDFKGPDFD-VDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVM 345 (359)
Q Consensus 285 ~~~l~~~fp~y~g~~~~-~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~ 345 (359)
.+ .+++.++..+ ..+.+++|||++++||+++|..+.
T Consensus 128 ---------------v~~~~~~~~~~~~----------~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 128 ---------------KKELERWISIYRD----------AGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp ---------------HHHHHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred ---------------cHHHHHHHHHHHH----------CCCeEEEEECCCCCCHHHHHhhcc
Confidence 01 2333344332 234678999999999999998764
No 196
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.71 E-value=4.8e-08 Score=91.22 Aligned_cols=71 Identities=23% Similarity=0.311 Sum_probs=48.7
Q ss_pred CCceeeEEecCCccc-------------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 195 GESIVNMVDVGGQRS-------------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~-------------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
.+..+.+|||+|... ++..+..|+++++++|+|+|.++-+. .+ .+...++..+ .
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~-------~~--~~~~~i~~~~-~--- 195 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL-------AN--SDALQLAKEV-D--- 195 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS-------TT--CSHHHHHHHH-C---
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch-------hh--hHHHHHHHHh-C---
Confidence 347899999999864 56677889999999999999864110 00 1112233332 2
Q ss_pred CCCCeEEEEeeCCCcch
Q psy14891 262 FREASFILFLNKFDLFR 278 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~ 278 (359)
..+.|+++++||+|+..
T Consensus 196 ~~~~~~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 196 PEGKRTIGVITKLDLMD 212 (315)
T ss_dssp SSCSSEEEEEECTTSSC
T ss_pred CCCCcEEEEEcCcccCC
Confidence 14689999999999864
No 197
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.69 E-value=7.5e-07 Score=89.86 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=65.6
Q ss_pred cccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhcc
Q psy14891 181 RVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNR 260 (359)
Q Consensus 181 r~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~ 260 (359)
|.-|+--....+.+++..++|.||+|+-.|..--...++-+|++|+|+|..+ --...+...|+....
T Consensus 84 RGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~-----------GV~~qT~~v~~~a~~-- 150 (548)
T 3vqt_A 84 RGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK-----------GVEAQTRKLMDVCRM-- 150 (548)
T ss_dssp ----CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTT-----------BSCHHHHHHHHHHHH--
T ss_pred CCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCC-----------CcccccHHHHHHHHH--
Confidence 3445555567788899999999999999988777778899999999999987 455667788877655
Q ss_pred CCCCCeEEEEeeCCCcch
Q psy14891 261 YFREASFILFLNKFDLFR 278 (359)
Q Consensus 261 ~~~~~~iiL~~NK~Dl~~ 278 (359)
.+.|+++|.||+|...
T Consensus 151 --~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 151 --RATPVMTFVNKMDREA 166 (548)
T ss_dssp --TTCCEEEEEECTTSCC
T ss_pred --hCCceEEEEecccchh
Confidence 3789999999999853
No 198
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.63 E-value=3.5e-08 Score=94.18 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=63.9
Q ss_pred CceeeEEecCCcc-------------ccccchhhhccCCcEEEEEE-ECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 196 ESIVNMVDVGGQR-------------SQRRKWIYCFDDVKAVLYVV-ALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 196 ~~~l~i~D~~Gq~-------------~~r~~w~~~f~~~~~iifv~-dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
...+.+|||+|.. .++.++..|+.+.+.+|+++ |.+. + .. -.+...+++.+.
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~-~--------~~-~~~~~~i~~~~~---- 194 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS-D--------LA-NSDALKVAKEVD---- 194 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS-C--------GG-GCHHHHHHHHHC----
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC-c--------cc-hhHHHHHHHHhC----
Confidence 4789999999963 35567778887776665554 5432 1 11 112333444432
Q ss_pred CCCCeEEEEeeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHH
Q psy14891 262 FREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVF 341 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf 341 (359)
..+.|+++|+||+|+..+.- . +.+++..+. .........++.+||+++.|+..+|
T Consensus 195 ~~~~~~i~V~NK~Dl~~~~~-------------------~---~~~~~~~~~---~~l~~~~~~v~~~SA~~~~~i~~l~ 249 (353)
T 2x2e_A 195 PQGQRTIGVITKLDLMDEGT-------------------D---ARDVLENKL---LPLRRGYIGVVNRSQKDIDGKKDIT 249 (353)
T ss_dssp TTCTTEEEEEECGGGSCTTC-------------------C---CHHHHTTCS---SCCTTCEEECCCCCHHHHHTTCCHH
T ss_pred cCCCceEEEeccccccCcch-------------------h---HHHHHhCCc---ccccCCceEEEeCCcccccccccHH
Confidence 24689999999999865321 0 011111100 0000011234568888888888888
Q ss_pred HHHHH
Q psy14891 342 HAVMD 346 (359)
Q Consensus 342 ~~v~~ 346 (359)
+.+.+
T Consensus 250 ~~l~~ 254 (353)
T 2x2e_A 250 AALAA 254 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87765
No 199
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.60 E-value=1.8e-07 Score=90.72 Aligned_cols=36 Identities=31% Similarity=0.279 Sum_probs=23.6
Q ss_pred ceeeEEecCCccc----cccch---hhhccCCcEEEEEEECCC
Q psy14891 197 SIVNMVDVGGQRS----QRRKW---IYCFDDVKAVLYVVALSG 232 (359)
Q Consensus 197 ~~l~i~D~~Gq~~----~r~~w---~~~f~~~~~iifv~dls~ 232 (359)
+.+.+|||+|+.. .+.++ ..++++++++++|+|.++
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 5689999999854 23333 356799999999999987
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.51 E-value=1.1e-06 Score=83.69 Aligned_cols=112 Identities=11% Similarity=0.006 Sum_probs=62.9
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.+..+.++||+|-. ..+....+.++.+++|+|.+..+ .... + ...+ ...|.++++||+
T Consensus 165 ~~~~~iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~~~----------~~~~-i--~~~i------l~~~~ivVlNK~ 222 (349)
T 2www_A 165 AGYDIILIETVGVG---QSEFAVADMVDMFVLLLPPAGGD----------ELQG-I--KRGI------IEMADLVAVTKS 222 (349)
T ss_dssp TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------------------CCSCSEEEECCC
T ss_pred CCCCEEEEECCCcc---hhhhhHHhhCCEEEEEEcCCcch----------hHHH-h--HHHH------HhcCCEEEEeee
Confidence 56789999999953 23455678999999999988621 1110 0 0011 235789999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccC-CCCceEEEEeeccCCchHHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHN-SAKVIYPHFTTATDTSNVQTVFHAVMDLV 348 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~-~~~~i~~~~tsA~d~~ni~~vf~~v~~~I 348 (359)
|+....- .......+.......+.. ......++.|||++++++..+++.+.+.+
T Consensus 223 Dl~~~~~--------------------~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 223 DGDLIVP--------------------ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp SGGGHHH--------------------HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCchh--------------------HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 9864211 011111111111111100 01123456799999999999999988764
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.47 E-value=9.8e-07 Score=84.58 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=29.1
Q ss_pred ceeeEEecCCccccc-------cchhhhccCCcEEEEEEECCC
Q psy14891 197 SIVNMVDVGGQRSQR-------RKWIYCFDDVKAVLYVVALSG 232 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r-------~~w~~~f~~~~~iifv~dls~ 232 (359)
..+++|||+|+.... ..+..++++++++++|+|.++
T Consensus 69 ~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 568899999997643 234456899999999999987
No 202
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.45 E-value=1.8e-07 Score=89.75 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=71.7
Q ss_pred CCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhc
Q psy14891 205 GGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYS 284 (359)
Q Consensus 205 ~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~ 284 (359)
..+++|++.+.+++++++++|+|+|+++++. .+...+... ..+.|+++++||+|+..+..
T Consensus 54 ~~~e~f~~~l~~i~~~~~~il~VvD~~d~~~------------~~~~~l~~~-----~~~~p~ilV~NK~DL~~~~~--- 113 (368)
T 3h2y_A 54 LTDDDFLRILNGIGKSDALVVKIVDIFDFNG------------SWLPGLHRF-----VGNNKVLLVGNKADLIPKSV--- 113 (368)
T ss_dssp --CHHHHHHHHHHHHSCCEEEEEEETTSHHH------------HCCTTHHHH-----SSSSCEEEEEECGGGSCTTS---
T ss_pred CCHHHHHHHHHHHhccCcEEEEEEECCCCcc------------cHHHHHHHH-----hCCCcEEEEEEChhcCCccc---
Confidence 3578999999999999999999999998321 111112222 24789999999999865322
Q ss_pred CCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 285 GRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 285 ~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
..+...+|+...+.... .+...++++||+++.||+++++.+.+.
T Consensus 114 ----------------~~~~~~~~l~~~~~~~g---~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 114 ----------------KHDKVKHWMRYSAKQLG---LKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp ----------------CHHHHHHHHHHHHHHTT---CCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHHcC---CCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 34556666665444321 111256789999999999999988653
No 203
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.43 E-value=4.1e-07 Score=91.87 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=50.3
Q ss_pred ceeeEEecCCccc-----------cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCC
Q psy14891 197 SIVNMVDVGGQRS-----------QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREA 265 (359)
Q Consensus 197 ~~l~i~D~~Gq~~-----------~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~ 265 (359)
..+.+|||+|... +...+..++.++++||||+|.++ .....+...++..+.. .+.
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~----------~~~~~~~~~~l~~l~~----~~~ 219 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK----------LEISDEFSEAIGALRG----HED 219 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS----------CCCCHHHHHHHHHTTT----CGG
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc----------CCCCHHHHHHHHHHHh----cCC
Confidence 4689999999875 55677788999999999999986 2223344444444422 357
Q ss_pred eEEEEeeCCCcch
Q psy14891 266 SFILFLNKFDLFR 278 (359)
Q Consensus 266 ~iiL~~NK~Dl~~ 278 (359)
|+++|+||+|+..
T Consensus 220 pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 220 KIRVVLNKADMVE 232 (550)
T ss_dssp GEEEEEECGGGSC
T ss_pred CEEEEEECCCccC
Confidence 8999999999864
No 204
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.33 E-value=3.8e-06 Score=80.19 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=29.3
Q ss_pred ceeeEEecCCccccc-------cchhhhccCCcEEEEEEECCC
Q psy14891 197 SIVNMVDVGGQRSQR-------RKWIYCFDDVKAVLYVVALSG 232 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r-------~~w~~~f~~~~~iifv~dls~ 232 (359)
..+++|||+|+.+.. ..+..++++++++++|+|.++
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 568899999998653 334556899999999999997
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.30 E-value=1.9e-06 Score=82.67 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=72.7
Q ss_pred EEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEE
Q psy14891 191 NFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILF 270 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~ 270 (359)
.+....++-..+....|+.|++.+.+++++++++|+|+|+++++... ...+ ... +.+.|++++
T Consensus 42 C~~l~hy~~~~~v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~-----~~~l-------~~~-----l~~~piilV 104 (369)
T 3ec1_A 42 CFRLKHYNEVQDVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNGSF-----IPGL-------PRF-----AADNPILLV 104 (369)
T ss_dssp -----------------CHHHHHHHHHHHHCCEEEEEEETTCSGGGC-----CSSH-------HHH-----CTTSCEEEE
T ss_pred HHHhhccccccCCcCCHHHHHHHHHHhhccCcEEEEEEECCCCCCch-----hhHH-------HHH-----hCCCCEEEE
Confidence 34443333233334569999999999999999999999999965211 1111 111 237899999
Q ss_pred eeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHH
Q psy14891 271 LNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDL 347 (359)
Q Consensus 271 ~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~ 347 (359)
+||+|+..+.. ..+...+|+...+.... .+...++++||+++.+++.+++.+.+.
T Consensus 105 ~NK~DLl~~~~-------------------~~~~~~~~l~~~~~~~g---~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 105 GNKADLLPRSV-------------------KYPKLLRWMRRMAEELG---LCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp EECGGGSCTTC-------------------CHHHHHHHHHHHHHTTT---CCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred EEChhcCCCcc-------------------CHHHHHHHHHHHHHHcC---CCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 99999875322 34566677766554332 111256789999999999999988654
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.24 E-value=2.6e-06 Score=77.07 Aligned_cols=127 Identities=14% Similarity=0.055 Sum_probs=66.7
Q ss_pred ceeeEEecCCccccccchh------hhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEE
Q psy14891 197 SIVNMVDVGGQRSQRRKWI------YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILF 270 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~~w~------~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~ 270 (359)
+.+.+|||+|+......+. .++.+ +.+|+++|.+. .....+....+..........+.|++++
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~----------~~~~~~~~~~~~~~~~~~~~~~~p~~iv 177 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEI----------LKKPNDYCFVRFFALLIDLRLGATTIPA 177 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGG----------CCSHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhh----------hcCHHHHHHHHHHHHHHhcccCCCeEEE
Confidence 4678999999977543322 24566 89999999765 1121221111111111011125799999
Q ss_pred eeCCCcchhhhhhcCCccccccccccCCCCCHHHHHHHHH-----HHH---------hhhccCCCCceEEEEeeccCCch
Q psy14891 271 LNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQ-----HKF---------ALRNHNSAKVIYPHFTTATDTSN 336 (359)
Q Consensus 271 ~NK~Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~-----~~f---------~~~~~~~~~~i~~~~tsA~d~~n 336 (359)
+||+|+....- ...+...+. +.+...+.+. ..| .... ..+.++.+||++++|
T Consensus 178 ~NK~D~~~~~~---~~~~~~~l~-------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~SA~~~~g 243 (262)
T 1yrb_A 178 LNKVDLLSEEE---KERHRKYFE-------DIDYLTARLKLDPSMQGLMAYKMCSMMTEVL----PPVRVLYLSAKTREG 243 (262)
T ss_dssp ECCGGGCCHHH---HHHHHHHHH-------CHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS----CCCCCEECCTTTCTT
T ss_pred Eeccccccccc---HHHHHHHHh-------ChHHHHHHHhccccccchhHhHHHHHHHHhc----CcccceEEEecCccc
Confidence 99999864321 000000000 1111111110 000 1111 123457899999999
Q ss_pred HHHHHHHHHHHH
Q psy14891 337 VQTVFHAVMDLV 348 (359)
Q Consensus 337 i~~vf~~v~~~I 348 (359)
++++|+.+.+.+
T Consensus 244 i~~l~~~i~~~~ 255 (262)
T 1yrb_A 244 FEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887665
No 207
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.23 E-value=1.1e-06 Score=90.36 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=63.4
Q ss_pred ccccceeEEEEeeCCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccC
Q psy14891 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRY 261 (359)
Q Consensus 182 ~~T~G~~~~~~~~~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~ 261 (359)
.-|+-.....+.+++..+++.||+|+..|..--....+-+|++|+|+|..+ --...+...|+.....
T Consensus 52 GITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~-----------GV~~qT~~v~~~a~~~-- 118 (638)
T 3j25_A 52 GITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD-----------GVQAQTRILFHALRKM-- 118 (638)
T ss_dssp SSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSC-----------TTCSHHHHHHHHHHHH--
T ss_pred CCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCC-----------CCcHHHHHHHHHHHHc--
Confidence 344444445667788899999999999998877888899999999999986 2334456677776543
Q ss_pred CCCCeEEEEeeCCCcch
Q psy14891 262 FREASFILFLNKFDLFR 278 (359)
Q Consensus 262 ~~~~~iiL~~NK~Dl~~ 278 (359)
++|.++|.||+|...
T Consensus 119 --~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 119 --GIPTIFFINKIDQNG 133 (638)
T ss_dssp --TCSCEECCEECCSSS
T ss_pred --CCCeEEEEecccccc
Confidence 678999999999754
No 208
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.68 E-value=7.8e-05 Score=71.85 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=25.5
Q ss_pred ceeeEEecCCcccccc-------chhhhccCCcEEEEEEECCCC
Q psy14891 197 SIVNMVDVGGQRSQRR-------KWIYCFDDVKAVLYVVALSGY 233 (359)
Q Consensus 197 ~~l~i~D~~Gq~~~r~-------~w~~~f~~~~~iifv~dls~y 233 (359)
..+++|||+|+...++ .|..++++++++++|+|.++-
T Consensus 86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 4588999999987654 688899999999999999873
No 209
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.63 E-value=6.3e-05 Score=69.33 Aligned_cols=101 Identities=13% Similarity=0.105 Sum_probs=64.3
Q ss_pred EecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhh
Q psy14891 202 VDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKI 281 (359)
Q Consensus 202 ~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~ 281 (359)
|--|.....++.+......+++||+|+|..+ ...... ..+..++ .+.|.++++||+|+.....
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~----------p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~ 67 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARI----------PMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAV 67 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTS----------TTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCC----------CCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHH
Confidence 3333344556666677899999999999986 211110 1122222 5789999999999865322
Q ss_pred hhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 282 LYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 282 ~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
.+...+|..+ ..+.++++||+++.++..+++.+.+.+-
T Consensus 68 --------------------~~~~~~~~~~----------~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 68 --------------------TQQWKEHFEN----------QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp --------------------HHHHHHHHHT----------TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHh----------cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 2333444332 2345678999999999999998877654
No 210
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.50 E-value=0.0003 Score=66.49 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=66.0
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKF 274 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~ 274 (359)
.+..+.+|||+|...... ...+.+|++|+|+|.+..+.. ..+.. .. .+.|.++|+||+
T Consensus 147 ~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~-------~~l~~------~~------~~~p~ivv~NK~ 204 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDL-------QGIKK------GL------MEVADLIVINKD 204 (341)
T ss_dssp TTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC-------------CCCCH------HH------HHHCSEEEECCC
T ss_pred cCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHH-------HHHHH------hh------hcccCEEEEECC
Confidence 467899999999654332 245899999999998864321 00100 11 135789999999
Q ss_pred CcchhhhhhcCCccccccccccCCCCCHHHHHHHHHHHHhhhccC-CCCceEEEEeeccCCchHHHHHHHHHHHHH
Q psy14891 275 DLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHN-SAKVIYPHFTTATDTSNVQTVFHAVMDLVI 349 (359)
Q Consensus 275 Dl~~~k~~~~~~~l~~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~-~~~~i~~~~tsA~d~~ni~~vf~~v~~~Il 349 (359)
|+....- ...+...+...+...... ......++.+||++++|+..+++.+.+.+.
T Consensus 205 Dl~~~~~--------------------~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 205 DGDNHTN--------------------VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CTTCHHH--------------------HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCChHH--------------------HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 9864311 122222233322211110 011235678999999999999999887653
No 211
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.32 E-value=0.00095 Score=69.25 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=56.4
Q ss_pred CceeeEEecCCccccccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCC
Q psy14891 196 ESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFD 275 (359)
Q Consensus 196 ~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~D 275 (359)
++.+++.||+|+-.|..--...++-+|++|+|+|..+ --...+...|+..... +.|+++|.||+|
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDave-----------GV~~qT~~v~~~a~~~----~lp~i~~iNKiD 148 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTS-----------GVEPQSETVWRQANKY----GVPRIVYVNKMD 148 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHHHHHHHH----TCCEEEEEECSS
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCC-----------CCchhHHHHHHHHHHc----CCCeEEEEcccc
Confidence 5789999999999887777777888999999999986 3445667778887654 689999999999
Q ss_pred cch
Q psy14891 276 LFR 278 (359)
Q Consensus 276 l~~ 278 (359)
...
T Consensus 149 r~~ 151 (709)
T 4fn5_A 149 RQG 151 (709)
T ss_dssp STT
T ss_pred ccC
Confidence 753
No 212
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.63 E-value=0.0043 Score=59.69 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=28.0
Q ss_pred eeeEEecCCcc-------ccccchhhhccCCcEEEEEEECCC
Q psy14891 198 IVNMVDVGGQR-------SQRRKWIYCFDDVKAVLYVVALSG 232 (359)
Q Consensus 198 ~l~i~D~~Gq~-------~~r~~w~~~f~~~~~iifv~dls~ 232 (359)
.+.+||++|.. ..+..|..++++++++++|+|+++
T Consensus 86 ~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 86 FLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46799999953 345567778899999999999976
No 213
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.56 E-value=0.0019 Score=58.69 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=54.5
Q ss_pred cccchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccc
Q psy14891 210 QRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLR 289 (359)
Q Consensus 210 ~r~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~ 289 (359)
-++.......+++.||.|+|..+-. .+.+.. ++ .. +.|.++++||+|+.....
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~------~~~~~~------l~------ll-~k~~iivlNK~DL~~~~~-------- 63 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPF------ATSAYG------VD------FS-RKETIILLNKVDIADEKT-------- 63 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTT------TTSCTT------SC------CT-TSEEEEEEECGGGSCHHH--------
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCC------cCcChH------HH------hc-CCCcEEEEECccCCCHHH--------
Confidence 3445556779999999999988610 001100 00 11 689999999999865322
Q ss_pred cccccccCCCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHHHHH
Q psy14891 290 YYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHAVMD 346 (359)
Q Consensus 290 ~~fp~y~g~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~v~~ 346 (359)
.+...+|+.+ ..+.+ ++||+++.+++.++..+..
T Consensus 64 ------------~~~~~~~~~~----------~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 64 ------------TKKWVEFFKK----------QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp ------------HHHHHHHHHH----------TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred ------------HHHHHHHHHH----------cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 2233334332 12334 8999999999988876643
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.55 E-value=0.0064 Score=60.36 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=39.3
Q ss_pred CCceeeEEecCCccccc-cchhhh-----ccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeE-
Q psy14891 195 GESIVNMVDVGGQRSQR-RKWIYC-----FDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASF- 267 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r-~~w~~~-----f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~i- 267 (359)
.+..+.|+||+|..... ..|... .-.++.+++|+|.+. ... .......+ +. ..|+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~----------g~~---~~~~a~~~-~~----~~~i~ 243 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI----------GQA---CEAQAKAF-KD----KVDVA 243 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC----------CTT---HHHHHHHH-HH----HHCCC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc----------ccc---HHHHHHHH-Hh----hcCce
Confidence 45788999999976432 222211 227899999999876 111 22222222 11 1464
Q ss_pred EEEeeCCCcc
Q psy14891 268 ILFLNKFDLF 277 (359)
Q Consensus 268 iL~~NK~Dl~ 277 (359)
.+|+||.|..
T Consensus 244 gvVlNK~D~~ 253 (504)
T 2j37_W 244 SVIVTKLDGH 253 (504)
T ss_dssp CEEEECTTSC
T ss_pred EEEEeCCccc
Confidence 7889999975
No 215
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.01 E-value=0.0038 Score=64.88 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=44.1
Q ss_pred ceeeEEecCCccc-------------cccchhhhc-cCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCC
Q psy14891 197 SIVNMVDVGGQRS-------------QRRKWIYCF-DDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYF 262 (359)
Q Consensus 197 ~~l~i~D~~Gq~~-------------~r~~w~~~f-~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~ 262 (359)
..+.++||+|-.. .+.....|. ..++.|++|+|.+. .-.-.+.+.+...+..
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~----------~~~~~d~l~ll~~L~~---- 215 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS----------DLANSDALKIAKEVDP---- 215 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTS----------CSSSCHHHHHHHHHCT----
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC----------CcchhHHHHHHHHHHh----
Confidence 5789999999543 122333444 57899999999886 1111223344444422
Q ss_pred CCCeEEEEeeCCCcch
Q psy14891 263 REASFILFLNKFDLFR 278 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~~ 278 (359)
.+.|+++|+||+|+..
T Consensus 216 ~g~pvIlVlNKiDlv~ 231 (772)
T 3zvr_A 216 QGQRTIGVITKLDLMD 231 (772)
T ss_dssp TCSSEEEEEECTTSSC
T ss_pred cCCCEEEEEeCcccCC
Confidence 3689999999999875
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.72 E-value=0.0071 Score=54.25 Aligned_cols=39 Identities=28% Similarity=0.255 Sum_probs=26.9
Q ss_pred HHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhhHhhc
Q psy14891 21 IDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 21 Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr~l~ 59 (359)
|-+.+........+...|+|.|++||||||+.+.+.-..
T Consensus 18 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 18 NLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp HHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred HHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 433444333344455678999999999999999985433
No 217
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.66 E-value=0.037 Score=51.90 Aligned_cols=35 Identities=14% Similarity=-0.025 Sum_probs=26.4
Q ss_pred CCceeeEEecCCccccccchhhhccCCcEEEEEEECCC
Q psy14891 195 GESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSG 232 (359)
Q Consensus 195 ~~~~l~i~D~~Gq~~~r~~w~~~f~~~~~iifv~dls~ 232 (359)
.+..+.++||+|...- .......++.+++|+|.+.
T Consensus 146 ~~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~ 180 (337)
T 2qm8_A 146 AGFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGA 180 (337)
T ss_dssp TTCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC
T ss_pred CCCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCC
Confidence 5678999999997532 1234578999999999764
No 218
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.65 E-value=0.0048 Score=52.54 Aligned_cols=20 Identities=45% Similarity=0.690 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
++.|+|+.||||||++|.+-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~ 21 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIV 21 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998763
No 219
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.63 E-value=0.0045 Score=52.54 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=18.6
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.++|+|++||||||++|.+-
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999874
No 220
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.62 E-value=0.0045 Score=52.07 Aligned_cols=18 Identities=44% Similarity=0.748 Sum_probs=16.5
Q ss_pred eEEEeccCCCchhHHHhh
Q psy14891 37 KILLLGAGESGKSTLVKQ 54 (359)
Q Consensus 37 kvLllG~~~sGKST~~kq 54 (359)
-+.|+|++||||||++|.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999997
No 221
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.57 E-value=0.011 Score=52.66 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=21.8
Q ss_pred hhcceeEEEeccCCCchhHHHhhhH
Q psy14891 32 EKHVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 32 ~~~~~kvLllG~~~sGKST~~kqmr 56 (359)
..+..+|+|+|++||||||+.+.+.
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3467889999999999999999884
No 222
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.45 E-value=0.0059 Score=51.72 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.4
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
.+.|+|++||||||+++.+.-
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998753
No 223
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.40 E-value=0.0063 Score=52.52 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=18.6
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.+.|+|++||||||+++.+-
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~ 25 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLF 25 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998874
No 224
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.29 E-value=0.007 Score=51.87 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|+.||||||+++.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~ 28 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALV 28 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 47899999999999998874
No 225
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.28 E-value=0.0072 Score=50.34 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=19.5
Q ss_pred eeEEEeccCCCchhHHHhhhHhh
Q psy14891 36 IKILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~l 58 (359)
..|.|+|++||||||+.+.+.-.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999987533
No 226
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.26 E-value=0.0093 Score=51.67 Aligned_cols=26 Identities=35% Similarity=0.303 Sum_probs=21.2
Q ss_pred hcceeEEEeccCCCchhHHHhhhHhh
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqmr~l 58 (359)
.+...|.|+|++||||||+++.+.-+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568899999999999999987533
No 227
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.24 E-value=0.0076 Score=51.27 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=17.6
Q ss_pred EEEeccCCCchhHHHhhhHh
Q psy14891 38 ILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~ 57 (359)
+.|+|++||||||++|.+.-
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67899999999999988753
No 228
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.15 E-value=0.0084 Score=49.54 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
-|+|.|++||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999988
No 229
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.15 E-value=0.0078 Score=53.04 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=16.6
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
|+|+|++||||+|..+.+.
T Consensus 32 I~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEECCTTCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5678999999999998874
No 230
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.13 E-value=0.0088 Score=51.86 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.8
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
++|+|.|++||||||+.+.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999883
No 231
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.10 E-value=0.009 Score=49.47 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.|+|.|++||||||+.+.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999874
No 232
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.08 E-value=0.0086 Score=52.85 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=18.2
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|+|++||||||+++++-
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999985
No 233
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.08 E-value=0.009 Score=50.71 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|+|++||||||++|.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 46899999999999999874
No 234
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.07 E-value=0.0096 Score=49.72 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=18.0
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-|+|.|.+||||||+.+.+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 47899999999999999875
No 235
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.05 E-value=0.0096 Score=51.69 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.8
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
++|+|.|++||||||+.+.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999883
No 236
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.99 E-value=0.011 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.5
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...|+|.|.+||||||+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999884
No 237
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.96 E-value=0.01 Score=50.89 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.5
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
..+.|+|++||||||+++.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999998875
No 238
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.88 E-value=0.011 Score=49.43 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=18.0
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-|+|.|.+||||||+.|.+.
T Consensus 5 ~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999875
No 239
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.88 E-value=0.011 Score=50.87 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=18.6
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.-+.|+|++||||||++|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999984
No 240
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.84 E-value=0.012 Score=51.33 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.7
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
+.|+|+|++||||+|..+.+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998874
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.83 E-value=0.019 Score=53.30 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=33.3
Q ss_pred chhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcch
Q psy14891 213 KWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFR 278 (359)
Q Consensus 213 ~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~ 278 (359)
++..-..++|.|++|+|+.+ ...-..-+.-|-..+. ..++|.+|++||+||..
T Consensus 79 l~R~~~anvD~v~~V~~~~~----------p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~ 131 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQ----------PSFSTALLDRFLVLVE---ANDIQPIICITKMDLIE 131 (307)
T ss_dssp ETTTTEECCCEEEEEEESTT----------TTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCC
T ss_pred hhHHHHHhCCEEEEEEeCCC----------CCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCc
Confidence 34445789999999999885 1111112222222222 24788999999999864
No 242
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.81 E-value=0.012 Score=53.49 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.3
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
+.++.|+|++||||||+++.+-
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~ 23 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLF 23 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 3679999999999999998874
No 243
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.78 E-value=0.012 Score=50.94 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|++||||||++|.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999998874
No 244
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.77 E-value=0.012 Score=49.10 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.5
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
..++|+|++||||||+.+.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 368999999999999999874
No 245
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.74 E-value=0.012 Score=51.76 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=18.4
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
--+.|+|++||||||++|.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALL 37 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 367899999999999998874
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.73 E-value=0.012 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=18.9
Q ss_pred eeEEEeccCCCchhHHHhhhHh
Q psy14891 36 IKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~ 57 (359)
-.+.|+|++||||||++|.+--
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3688999999999999998743
No 247
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.71 E-value=0.013 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.7
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
..|+|.|.+||||||+.+.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999874
No 248
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.71 E-value=0.012 Score=51.11 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.3
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|++||||||+++++-
T Consensus 27 ~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999984
No 249
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.71 E-value=0.013 Score=50.60 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=19.4
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+..-|+|.|++||||||+.+.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHH
Confidence 34468899999999999999874
No 250
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.70 E-value=0.013 Score=48.78 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=18.1
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|+.||||||++|.+-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999874
No 251
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.66 E-value=0.013 Score=52.01 Aligned_cols=22 Identities=27% Similarity=0.628 Sum_probs=19.3
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...+.|+|++||||||++|.+-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999874
No 252
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.64 E-value=0.015 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.5
Q ss_pred ceeEEEeccCCCchhHHHhhhHhhc
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~l~ 59 (359)
...+.|+|+.||||||++|.+.-++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999885443
No 253
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.62 E-value=0.033 Score=45.26 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=25.5
Q ss_pred HHHHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhhH
Q psy14891 19 DEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 19 ~~Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr 56 (359)
..+.+.++.-+........|||.|++|+|||++.+.+-
T Consensus 8 ~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 8 EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 33333333323333456689999999999999998763
No 254
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.62 E-value=0.015 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.2
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...|+|.|.+||||||+.+.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999874
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.61 E-value=0.018 Score=49.93 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=18.2
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
-+.|+|++||||||+++.+.-
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478899999999999998753
No 256
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.60 E-value=0.023 Score=48.73 Aligned_cols=22 Identities=36% Similarity=0.367 Sum_probs=19.0
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
..-|.|+|++||||||+.|.+-
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4468899999999999999874
No 257
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.57 E-value=0.015 Score=49.90 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=18.8
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.|+|+|++||||||+.+.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 378999999999999999884
No 258
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.55 E-value=0.015 Score=48.98 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=18.2
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.|+|.|.+||||||+.+.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999885
No 259
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.55 E-value=0.015 Score=48.65 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=18.3
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
+|+|.|++||||||+.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999874
No 260
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.54 E-value=0.016 Score=50.29 Aligned_cols=21 Identities=38% Similarity=0.600 Sum_probs=18.9
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
++|+|.|++||||||+.+.+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999885
No 261
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.53 E-value=0.016 Score=49.67 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.0
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
+|.|.|+.||||||+.|.+.-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999998864
No 262
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.52 E-value=0.017 Score=49.25 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.2
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.|+|.|..||||||+.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 58999999999999999875
No 263
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.52 E-value=0.016 Score=50.54 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.5
Q ss_pred eeEEEeccCCCchhHHHhhhHh
Q psy14891 36 IKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~ 57 (359)
..|.|.|++||||||+.|.+.-
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 264
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.50 E-value=0.017 Score=47.68 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=18.8
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
+|+|.|..||||||+.+.+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 265
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.42 E-value=0.016 Score=51.53 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999988764
No 266
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.41 E-value=0.018 Score=48.56 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=18.3
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.|+|.|.+||||||+.+.+.
T Consensus 7 ~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
No 267
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.40 E-value=0.02 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.6
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...|+|.|.+||||||+.+.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999885
No 268
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.38 E-value=0.019 Score=48.47 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.1
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...|+|.|..||||||+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999874
No 269
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.37 E-value=0.016 Score=48.69 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=18.6
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.++|.|++|+||||+++.+-
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999873
No 270
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.37 E-value=0.018 Score=48.48 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=19.3
Q ss_pred eeEEEeccCCCchhHHHhhhHh
Q psy14891 36 IKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~ 57 (359)
..|+|.|++||||||+.+.+.-
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.33 E-value=0.019 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.2
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
..-|+|.|.+||||||+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999884
No 272
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.30 E-value=0.02 Score=49.27 Aligned_cols=21 Identities=29% Similarity=0.273 Sum_probs=18.7
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
.|.|+|+.||||||+.+.+.-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998854
No 273
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.30 E-value=0.033 Score=47.86 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=19.6
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+..-+.|.|++||||||+++.+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999998874
No 274
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.29 E-value=0.021 Score=48.91 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=19.9
Q ss_pred ceeEEEeccCCCchhHHHhhhHh
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~ 57 (359)
...|+|.|.+||||||+.+.+.-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999853
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.25 E-value=0.022 Score=48.90 Aligned_cols=19 Identities=42% Similarity=0.684 Sum_probs=17.1
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
|+|.|++|||||||++.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998864
No 276
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.24 E-value=0.029 Score=51.44 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=26.6
Q ss_pred HHhcHHHHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhhH
Q psy14891 15 QRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 15 ~~~s~~Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...+.+...+.. .....+..-|+|.|++||||||+.+.+.
T Consensus 14 ~~~~~~~~~~l~~-~~~~~~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 14 NRLNDNLEELIQG-KKAVESPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp HHHHHHHHHHHTT-CCCCSSCEEEEEECCTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHhcc-ccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3444445555432 1222334568899999999999999874
No 277
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.21 E-value=0.019 Score=50.69 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=17.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999988763
No 278
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.18 E-value=0.023 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.5
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...|+|.|..||||||+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999875
No 279
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.17 E-value=0.023 Score=48.13 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.1
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...|+|.|..||||||+.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 44578999999999999999985
No 280
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.14 E-value=0.022 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=19.9
Q ss_pred ceeEEEeccCCCchhHHHhhhHh
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~ 57 (359)
...|+|.|..||||||+.+.+.-
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999998753
No 281
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.14 E-value=0.021 Score=48.12 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.7
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
.|+|.|.+||||||+.+.+.-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 282
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.13 E-value=0.023 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.2
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...|+|.|.+||||||+.+.+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999885
No 283
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.11 E-value=0.02 Score=49.91 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999998874
No 284
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.07 E-value=0.021 Score=50.06 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=17.1
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
.+.|+|+.||||||++|-+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999998876
No 285
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.06 E-value=0.021 Score=51.66 Aligned_cols=21 Identities=43% Similarity=0.436 Sum_probs=18.6
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.++++|+.||||||+++.+-
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 368999999999999999874
No 286
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.04 E-value=0.022 Score=47.79 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=19.0
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...|+|.|.+||||||+.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3468999999999999999874
No 287
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.02 E-value=0.022 Score=50.72 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988763
No 288
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.00 E-value=0.022 Score=50.84 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 56899999999999998874
No 289
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.99 E-value=0.022 Score=51.99 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998874
No 290
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.98 E-value=0.023 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=19.6
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...|+|.|.+||||||+.+.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999884
No 291
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.97 E-value=0.026 Score=47.63 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=18.0
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.|+|.|..||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 292
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.96 E-value=0.023 Score=49.53 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.5
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...|+|.|++||||||+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999884
No 293
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.96 E-value=0.025 Score=48.61 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.1
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...|+|.|..||||||+.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999885
No 294
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.95 E-value=0.024 Score=50.82 Aligned_cols=20 Identities=45% Similarity=0.574 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999998874
No 295
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.93 E-value=0.026 Score=48.53 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=20.0
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...|+|.|..||||||+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 34578999999999999999885
No 296
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.92 E-value=0.018 Score=50.64 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=13.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|+.||||||+++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999998874
No 297
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.85 E-value=0.025 Score=50.44 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988774
No 298
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.85 E-value=0.025 Score=49.09 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|+|++||||||+++++-
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47889999999999999984
No 299
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.82 E-value=0.025 Score=50.99 Aligned_cols=20 Identities=40% Similarity=0.659 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999988763
No 300
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.82 E-value=0.025 Score=50.41 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999988763
No 301
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.78 E-value=0.025 Score=51.11 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=17.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|+.||||||++|-+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999988763
No 302
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.77 E-value=0.028 Score=46.56 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=18.2
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.|+|.|.+||||||+.+.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999875
No 303
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.77 E-value=0.026 Score=50.94 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999988763
No 304
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.76 E-value=0.028 Score=47.32 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.5
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
..|+|.|..||||||+.+.+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999999884
No 305
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.75 E-value=0.027 Score=48.78 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|+|++||||||+++.+.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 57889999999999998874
No 306
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.75 E-value=0.027 Score=48.06 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=17.3
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
+|++|+++|||||+..|+-
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7999999999999998863
No 307
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.75 E-value=0.026 Score=50.62 Aligned_cols=20 Identities=40% Similarity=0.471 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999988764
No 308
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.74 E-value=0.029 Score=49.10 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=18.3
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.|+|.|..||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999884
No 309
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.73 E-value=0.029 Score=47.55 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-|.|.|+.||||||+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 310
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.72 E-value=0.031 Score=47.82 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.1
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...|+|.|..||||||+.+.+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999999884
No 311
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.71 E-value=0.026 Score=51.14 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999988774
No 312
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.71 E-value=0.027 Score=49.81 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988763
No 313
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.70 E-value=0.027 Score=50.58 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57899999999999988763
No 314
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.68 E-value=0.033 Score=48.49 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.6
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
-..|+|.|.+||||||+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999884
No 315
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.68 E-value=0.059 Score=43.62 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.7
Q ss_pred hcceeEEEeccCCCchhHHHhhh
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqm 55 (359)
.....|||.|+.|+|||++.+.+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 34567999999999999998876
No 316
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.67 E-value=0.049 Score=49.98 Aligned_cols=27 Identities=30% Similarity=0.180 Sum_probs=22.0
Q ss_pred hcceeEEEeccCCCchhHHHhhhHhhc
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqmr~l~ 59 (359)
.+...|.|.|++||||||+++.+.-++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455678999999999999999875443
No 317
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.66 E-value=0.023 Score=47.61 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=14.7
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
..|+|.|.+||||||+.+.+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999874
No 318
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.66 E-value=0.19 Score=47.52 Aligned_cols=85 Identities=13% Similarity=0.134 Sum_probs=47.2
Q ss_pred ccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHhccCCCCCeEEEEeeCCCcchhhhhhcCCccccccccccC
Q psy14891 218 FDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKG 297 (359)
Q Consensus 218 f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~~~~~~~~~iiL~~NK~Dl~~~k~~~~~~~l~~~fp~y~g 297 (359)
-.++|.|++|.+..- +.+.+. +.-|--.+. ..++|.+|++||+||..+..
T Consensus 128 ~anvD~v~iv~a~~P-------~~~~~~----i~r~L~~a~---~~~~~~iivlNK~DL~~~~~---------------- 177 (358)
T 2rcn_A 128 AANIDQIVIVSAILP-------ELSLNI----IDRYLVGCE---TLQVEPLIVLNKIDLLDDEG---------------- 177 (358)
T ss_dssp EECCCEEEEEEESTT-------TCCHHH----HHHHHHHHH---HHTCEEEEEEECGGGCCHHH----------------
T ss_pred HhcCCEEEEEEeCCC-------CCCHHH----HHHHHHHHH---hcCCCEEEEEECccCCCchh----------------
Confidence 478999998876431 111222 222211111 13678899999999865321
Q ss_pred CCCCHHHHHHHHHHHHhhhccCCCCceEEEEeeccCCchHHHHHHH
Q psy14891 298 PDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQTVFHA 343 (359)
Q Consensus 298 ~~~~~~~a~~fi~~~f~~~~~~~~~~i~~~~tsA~d~~ni~~vf~~ 343 (359)
.+...+++ ..|.. ..+.++++||+++.+++.+-..
T Consensus 178 ----~~~~~~~~-~~y~~------~G~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 178 ----MDFVNEQM-DIYRN------IGYRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp ----HHHHHHHH-HHHHT------TTCCEEECBTTTTBTHHHHHHH
T ss_pred ----HHHHHHHH-HHHHh------CCCcEEEEecCCCcCHHHHHHh
Confidence 01122222 22432 2344678999999998876654
No 319
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.65 E-value=0.031 Score=46.33 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=18.1
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-|+|.|..||||||+.+.+.
T Consensus 9 ~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999875
No 320
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.65 E-value=0.027 Score=51.15 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988774
No 321
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.63 E-value=0.028 Score=50.42 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=17.1
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
++|.|++||||||+.+++-
T Consensus 4 i~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 6889999999999999873
No 322
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.62 E-value=0.033 Score=47.41 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=21.0
Q ss_pred cceeEEEeccCCCchhHHHhhhHhh
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr~l 58 (359)
+...|.|.|..||||||+.+.+.-.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4567899999999999999988643
No 323
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.61 E-value=0.028 Score=50.88 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47899999999999988764
No 324
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.61 E-value=0.029 Score=50.48 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=17.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999988763
No 325
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.59 E-value=0.03 Score=50.55 Aligned_cols=20 Identities=40% Similarity=0.491 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988874
No 326
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.56 E-value=0.03 Score=48.28 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.6
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
-++|.|++||||||+++++-.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999843
No 327
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.55 E-value=0.035 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.6
Q ss_pred cceeEEEeccCCCchhHHHhhhHh
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr~ 57 (359)
+...|.|.|++||||||+.+.+.-
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998854
No 328
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.50 E-value=0.035 Score=47.69 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=19.6
Q ss_pred ceeEEEeccCCCchhHHHhhhHh
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~ 57 (359)
...|.|.|++||||||+++.+.-
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998854
No 329
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.49 E-value=0.03 Score=50.67 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999988763
No 330
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.48 E-value=0.032 Score=50.51 Aligned_cols=20 Identities=40% Similarity=0.821 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999998774
No 331
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.47 E-value=0.032 Score=47.82 Aligned_cols=19 Identities=32% Similarity=0.600 Sum_probs=17.4
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
++.|+|+.||||||+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l 21 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKA 21 (189)
T ss_dssp CEEEESCCSSCHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHH
Confidence 6889999999999999876
No 332
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.47 E-value=0.033 Score=52.68 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=21.8
Q ss_pred ceeEEEeccCCCchhHHHhhhHhhcC
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKIIHN 60 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~l~~ 60 (359)
.-++.|+|++||||||++|.+--++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999865543
No 333
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.45 E-value=0.031 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.1
Q ss_pred ceeEEEeccCCCchhHHHhhhHhh
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~l 58 (359)
...|-|+|+.||||||++|.+.-+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999988543
No 334
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.45 E-value=0.037 Score=48.01 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=19.9
Q ss_pred ceeEEEeccCCCchhHHHhhhHh
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~ 57 (359)
...|.|.|..||||||+.+.+.-
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 335
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.42 E-value=0.032 Score=50.61 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999988763
No 336
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.35 E-value=0.056 Score=46.72 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.0
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
..-|+|.|.+||||||+.+.+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4468899999999999999874
No 337
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.33 E-value=0.035 Score=46.54 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.5
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
..|.|.|..||||||+.+.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999998874
No 338
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.33 E-value=0.035 Score=46.87 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=19.5
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+..-|+|.|.+||||||+.+.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 34568999999999999998874
No 339
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.33 E-value=0.035 Score=50.72 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 57899999999999988763
No 340
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.30 E-value=0.033 Score=51.70 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=20.9
Q ss_pred cceeEEEeccCCCchhHHHhhhHhhc
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr~l~ 59 (359)
+..-+.|+|++||||||++|.+.-+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 34467899999999999999885443
No 341
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.21 E-value=0.037 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.1
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...|.|+|++||||||++|.+-
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999998873
No 342
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.16 E-value=0.039 Score=51.12 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.0
Q ss_pred eeEEEeccCCCchhHHHhhhHhhc
Q psy14891 36 IKILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~l~ 59 (359)
-.+.|+|++|||||||++-+--++
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 368999999999999999874333
No 343
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.16 E-value=0.043 Score=49.29 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.8
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.-|+|.|.+||||||+.+.+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 468899999999999999985
No 344
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.14 E-value=0.048 Score=45.71 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.0
Q ss_pred eEEEeccCCCchhHHHhhhHhhcC
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIHN 60 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~~ 60 (359)
-.+|+|+.||||||+++.+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 358999999999999999876543
No 345
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.00 E-value=0.064 Score=44.43 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=18.1
Q ss_pred eeEEEeccCCCchhHHHhhh
Q psy14891 36 IKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqm 55 (359)
--+||.|++|+||||+++.+
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 46899999999999999887
No 346
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.97 E-value=0.041 Score=48.16 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=18.8
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
-++|+|++||||||+++++-.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999854
No 347
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.97 E-value=0.04 Score=50.31 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.0
Q ss_pred eEEEeccCCCchhHHHhhhHhh
Q psy14891 37 KILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l 58 (359)
-++|+|++|||||||++++-..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998543
No 348
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.95 E-value=0.044 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.1
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...|+|.|..||||||+.+.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999884
No 349
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.94 E-value=0.026 Score=48.61 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-|.+.|..||||||+++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47889999999999998874
No 350
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.89 E-value=0.041 Score=52.15 Aligned_cols=20 Identities=30% Similarity=0.655 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|++||||||++|.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHh
Confidence 46899999999999988775
No 351
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.83 E-value=0.045 Score=50.29 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999988763
No 352
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.83 E-value=0.053 Score=46.59 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=21.2
Q ss_pred cceeEEEeccCCCchhHHHhhhHhh
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr~l 58 (359)
....|.|.|..||||||+.+.+.-.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999999999998654
No 353
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.71 E-value=0.045 Score=51.80 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
-++++|+.||||||+++-+
T Consensus 125 ~i~I~GptGSGKTTlL~~l 143 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAM 143 (356)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999987
No 354
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.70 E-value=0.046 Score=51.75 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|++||||||++|-+-
T Consensus 43 ~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999998774
No 355
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.70 E-value=0.051 Score=48.29 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=19.7
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+.+.|.|.|++||||||+.+.+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999874
No 356
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.67 E-value=0.03 Score=47.24 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.++|++||||||+++.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999998874
No 357
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.65 E-value=0.047 Score=49.44 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=18.7
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
-++|+|++|||||||++++-.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999863
No 358
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.61 E-value=0.11 Score=48.02 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=20.8
Q ss_pred ceeEEEeccCCCchhHHHhhhHhhc
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~l~ 59 (359)
...|.|+|+.||||||+++.+.-+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999886543
No 359
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.60 E-value=0.048 Score=44.71 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|+|+.||||||+++.+-
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~ 57 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWV 57 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999988763
No 360
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.58 E-value=0.049 Score=49.45 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.7
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
++|+|++|+||||++|.+-
T Consensus 47 vlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp EEEESSTTSCHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 9999999999999999874
No 361
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.55 E-value=0.049 Score=51.62 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|++||||||++|-+-
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHHH
Confidence 47899999999999998775
No 362
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.51 E-value=0.059 Score=49.09 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.2
Q ss_pred ceeEEEeccCCCchhHHHhhhHh
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~ 57 (359)
...|.|.|..||||||+.+.+.-
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999873
No 363
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.49 E-value=0.051 Score=49.55 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.5
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
-|+|.|.+||||||+.+.+.-
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998753
No 364
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.47 E-value=0.051 Score=51.92 Aligned_cols=20 Identities=30% Similarity=0.602 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|++||||||++|-+-
T Consensus 31 ~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHHH
Confidence 47899999999999988775
No 365
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.44 E-value=0.054 Score=48.62 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.3
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
.-.|.|+|.+||||||+.+.+-
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999998874
No 366
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.44 E-value=0.053 Score=48.15 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=17.6
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
++|+|++|+||||++|.+-
T Consensus 52 ~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999998874
No 367
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.43 E-value=0.052 Score=51.51 Aligned_cols=20 Identities=45% Similarity=0.584 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|++||||||++|-+-
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHh
Confidence 47899999999999998775
No 368
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.42 E-value=0.041 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.0
Q ss_pred eEEEeccCCCchhHHHhhhHhhc
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~ 59 (359)
.+.|+|++||||||++|-+--++
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 57899999999999998874333
No 369
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.41 E-value=0.072 Score=44.10 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.0
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
.-.+||.|++|+||||+++.+-
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4468999999999999998874
No 370
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.41 E-value=0.055 Score=52.43 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=17.8
Q ss_pred eeEEEeccCCCchhHHHhhh
Q psy14891 36 IKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqm 55 (359)
.++.|+|++|||||||++.+
T Consensus 43 ~~vaLvG~nGaGKSTLln~L 62 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTL 62 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35999999999999998876
No 371
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.41 E-value=0.052 Score=51.68 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|++||||||++|-+-
T Consensus 39 ~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 46899999999999998875
No 372
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.41 E-value=0.052 Score=51.68 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|++||||||++|-+-
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHH
Confidence 47899999999999998775
No 373
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.31 E-value=0.055 Score=50.62 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.6
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.++++|+.||||||+++-+-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999998874
No 374
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.21 E-value=0.057 Score=51.14 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=20.1
Q ss_pred ceeEEEeccCCCchhHHHhhhHhh
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~l 58 (359)
--.++|+|+.||||||+++-|--+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 347999999999999999987533
No 375
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.11 E-value=0.058 Score=47.42 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=19.2
Q ss_pred ceeEEEeccCCCchhHHHhhhHh
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~ 57 (359)
-.-|.|.|+.||||||++|.+.-
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999988753
No 376
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.09 E-value=0.06 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=19.1
Q ss_pred eEEEeccCCCchhHHHhhhHhhc
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~ 59 (359)
-+.|+|++||||||++|-+--+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 36799999999999998876443
No 377
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.06 E-value=0.046 Score=51.60 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|++||||||++|-+-
T Consensus 28 ~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHH
Confidence 47899999999999998775
No 378
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.99 E-value=0.13 Score=47.85 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.5
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.++|.|++|+||||+++-+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 368999999999999998874
No 379
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.98 E-value=0.064 Score=51.04 Aligned_cols=20 Identities=45% Similarity=0.532 Sum_probs=18.3
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.++++|+.||||||+++.+-
T Consensus 138 ~i~ivG~~GsGKTTll~~l~ 157 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMI 157 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
No 380
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.88 E-value=0.082 Score=49.27 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=20.6
Q ss_pred ceeEEEeccCCCchhHHHhhhHhhc
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~l~ 59 (359)
.+-+.|.|++||||||+++.+.-+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4458899999999999999886544
No 381
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.86 E-value=0.072 Score=45.02 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.8
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
-+.+.|.+||||||+++.+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 4688999999999999876
No 382
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.85 E-value=0.068 Score=49.40 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=19.5
Q ss_pred eeEEEeccCCCchhHHHhhhHhhc
Q psy14891 36 IKILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~l~ 59 (359)
--+.|+|++||||||+++.+--++
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999998875443
No 383
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.82 E-value=0.078 Score=43.44 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=17.6
Q ss_pred EEEeccCCCchhHHHhhhHh
Q psy14891 38 ILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~ 57 (359)
.+++|+.|||||||+..+..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999988864
No 384
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.81 E-value=0.066 Score=52.48 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=19.1
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
--.+.|+|+.||||||++|-+-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3479999999999999998763
No 385
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.80 E-value=0.067 Score=51.75 Aligned_cols=19 Identities=42% Similarity=0.401 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
-++++|+.||||||+++.|
T Consensus 169 ii~I~GpnGSGKTTlL~al 187 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAG 187 (418)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999999987
No 386
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.73 E-value=0.069 Score=51.19 Aligned_cols=20 Identities=45% Similarity=0.591 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|++||||||++|-+-
T Consensus 49 ~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 47899999999999998874
No 387
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.66 E-value=0.074 Score=48.05 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=17.6
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
++|+|++|+||||+++.+-
T Consensus 76 vll~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVA 94 (278)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHH
Confidence 8999999999999998874
No 388
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.53 E-value=0.081 Score=45.09 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=18.5
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
.|.|.|+.||||||+.+.+.-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999854
No 389
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.52 E-value=0.047 Score=51.62 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|++||||||++|-+-
T Consensus 33 ~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 47899999999999998764
No 390
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.47 E-value=0.079 Score=48.91 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+.|+|+.||||||+++.+-
T Consensus 102 vi~lvG~nGsGKTTll~~La 121 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLA 121 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 57899999999999998874
No 391
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.45 E-value=0.08 Score=46.33 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=17.1
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
-++|+|++||||||++.|+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999998887
No 392
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.41 E-value=0.18 Score=43.66 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.9
Q ss_pred ceeEEEeccCCCchhHHHhhh
Q psy14891 35 VIKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqm 55 (359)
.-.+||.|++|+||||+++.+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l 72 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAA 72 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 457999999999999999887
No 393
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.33 E-value=0.088 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.6
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
...+|+|+|.+||||||+.+++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La 60 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLT 60 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999874
No 394
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.31 E-value=0.084 Score=49.72 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=21.0
Q ss_pred cceeEEEeccCCCchhHHHhhhHhh
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr~l 58 (359)
+--++.|+|+.|+||||+++.|--+
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999988543
No 395
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.31 E-value=0.078 Score=52.75 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
-++|+|++||||||+++++
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5899999999999999994
No 396
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.21 E-value=0.093 Score=46.23 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.5
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+..-|++.|+.||||||+++.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 34568999999999999998874
No 397
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.19 E-value=0.087 Score=48.44 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|++||||||+++.+-
T Consensus 171 iv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHS
T ss_pred eEEEECCCCCcHHHHHHHhc
Confidence 57899999999999998874
No 398
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.14 E-value=0.09 Score=46.73 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.5
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
..+||.|++|+||||+++.+-
T Consensus 46 ~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 358999999999999998873
No 399
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.11 E-value=0.087 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.8
Q ss_pred eEEEeccCCCchhHHHhhhHhhc
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~ 59 (359)
-++|+|++|||||||++|+-...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999986554
No 400
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.10 E-value=0.087 Score=48.85 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=17.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|+|..||||||+++.+-
T Consensus 6 v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 35788999999999999875
No 401
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.03 E-value=0.092 Score=48.34 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=19.7
Q ss_pred eeEEEeccCCCchhHHHhhhHhhc
Q psy14891 36 IKILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~l~ 59 (359)
-.+.|+|++||||||+++.+- +.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 357899999999999999987 43
No 402
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.02 E-value=0.2 Score=48.31 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=19.3
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...+.|+|+.||||||+++.+-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHh
Confidence 34478999999999999988763
No 403
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.00 E-value=0.1 Score=45.88 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=20.1
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...|.|.|..||||||+.+.+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45579999999999999999875
No 404
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.86 E-value=0.2 Score=46.33 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=24.4
Q ss_pred HHHHHHHhHHhhhcceeEEEeccCCCchhHHHhhhH
Q psy14891 21 IDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 21 Id~~l~~~~~~~~~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...++.-+........|||.|++|+||||+++.+-
T Consensus 41 l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 41 LNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHH
Confidence 334444332223334579999999999999999873
No 405
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.73 E-value=0.11 Score=44.28 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.0
Q ss_pred eeEEEeccCCCchhHHHhhh
Q psy14891 36 IKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqm 55 (359)
.-++|.|++|+||||+++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i 74 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAI 74 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57999999999999998876
No 406
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=90.69 E-value=0.35 Score=45.95 Aligned_cols=75 Identities=8% Similarity=0.077 Sum_probs=47.0
Q ss_pred EEeeCCceeeEEecCCccccc-------cchhhhccCCcEEEEEEECCCCccccccCCcccchHHHHHHHHHHHh-ccCC
Q psy14891 191 NFRLGESIVNMVDVGGQRSQR-------RKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVN-NRYF 262 (359)
Q Consensus 191 ~~~~~~~~l~i~D~~Gq~~~r-------~~w~~~f~~~~~iifv~dls~yd~~l~ed~~~~~l~es~~~~~~i~~-~~~~ 262 (359)
.+.+.+..+++.||+|-.... +......+.++++++|+|.++ .- .+...+..++.. ...+
T Consensus 113 ~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~----------p~--~~~~~i~~EL~~~~~~l 180 (376)
T 4a9a_A 113 VIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNK----------PL--HHKQIIEKELEGVGIRL 180 (376)
T ss_dssp EEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTS----------HH--HHHHHHHHHHHHTTEEE
T ss_pred EEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCc----------cH--HHHHHHHHHHHHhhHhh
Confidence 456688999999999964321 122334578999999999986 21 111111222211 1234
Q ss_pred CCCeEEEEeeCCCcc
Q psy14891 263 REASFILFLNKFDLF 277 (359)
Q Consensus 263 ~~~~iiL~~NK~Dl~ 277 (359)
...|.++++||.|..
T Consensus 181 ~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 181 NKTPPDILIKKKEKG 195 (376)
T ss_dssp TCCCCCEEEEECSSS
T ss_pred ccCChhhhhhHhhhh
Confidence 567888999999964
No 407
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.69 E-value=0.1 Score=50.40 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.9
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.-|+|.|.+||||||+.+++.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 347888999999999999863
No 408
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.58 E-value=0.11 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=18.9
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
.--+.|+|+.||||||+++.+-
T Consensus 129 g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999998874
No 409
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.56 E-value=0.12 Score=43.55 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.5
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
-+.+.|.+||||||++..+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L 24 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKW 24 (169)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678899999999998775
No 410
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.55 E-value=0.11 Score=50.62 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=20.9
Q ss_pred cceeEEEeccCCCchhHHHhhhHhh
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr~l 58 (359)
+--++.|+|++||||||+++.+--+
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999988543
No 411
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.53 E-value=0.11 Score=46.42 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=19.9
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...|++-|..||||||+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999875
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.42 E-value=0.11 Score=51.27 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|+|.+||||||+++.+-
T Consensus 295 VI~LVGpNGSGKTTLl~~LA 314 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLA 314 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHH
Confidence 57899999999999998874
No 413
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.41 E-value=0.095 Score=48.00 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=16.7
Q ss_pred ceeEEEeccCCCchhHHHhhhHh
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~ 57 (359)
..-|.|-|++||||||+.+.+.-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 44588889999999999999864
No 414
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.40 E-value=0.19 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.3
Q ss_pred cceeEEEeccCCCchhHHHhhh
Q psy14891 34 HVIKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqm 55 (359)
+...+.|+|++||||||+++.+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l 75 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDAL 75 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4457899999999999999887
No 415
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.30 E-value=0.25 Score=43.99 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=19.9
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
...-|||.|++|+|||++++.+-
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHHHH
Confidence 35689999999999999998874
No 416
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.26 E-value=0.27 Score=42.03 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=17.3
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
-+||.|++|+||||+++.+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999887
No 417
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.24 E-value=0.26 Score=41.65 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
.+||.|++|+||||+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp CEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4999999999999999887
No 418
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.07 E-value=0.12 Score=48.77 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=18.0
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|++|+||||+++.+-
T Consensus 217 ~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 68999999999999998774
No 419
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.03 E-value=0.13 Score=48.77 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|+|+.||||||+++-+-
T Consensus 159 vi~lvG~nGsGKTTll~~La 178 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLA 178 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHH
Confidence 57899999999999998774
No 420
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.96 E-value=0.13 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=18.4
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
--++|+|++||||||+++.+-
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998874
No 421
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.87 E-value=0.22 Score=49.39 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=18.2
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.++++|+.||||||+++.+-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999874
No 422
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.78 E-value=0.13 Score=49.37 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|+|++|||||||++|+-
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 47899999999999999874
No 423
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=89.73 E-value=0.3 Score=44.39 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=20.9
Q ss_pred hcceeEEEeccCCCchhHHHhhhH
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqmr 56 (359)
.+.++++++|.+++||||++..+.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~ 141 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLA 141 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCceEEEEecCCCchHHHHHHHh
Confidence 356899999999999999998763
No 424
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.51 E-value=0.15 Score=45.83 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.1
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
.--+||.|++|+||||+++.+-
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4469999999999999999873
No 425
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.51 E-value=0.15 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.1
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
..-+||.|++|+||||+++.+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 3478999999999999998873
No 426
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.48 E-value=0.17 Score=47.02 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.5
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
.+|+.|+.|+||||+++.+--
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998743
No 427
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.47 E-value=0.17 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.6
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+-..+.|+|.+||||||++|.+-
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La 390 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALA 390 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHH
Confidence 34568999999999999999874
No 428
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.42 E-value=0.18 Score=43.46 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=18.4
Q ss_pred EEEeccCCCchhHHHhhhHhhc
Q psy14891 38 ILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l~ 59 (359)
.+|.|+.|||||||+..+..+-
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 4788999999999998876443
No 429
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.26 E-value=0.16 Score=50.80 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999988775
No 430
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.15 E-value=0.29 Score=44.76 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.4
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...+||.|++|+||||+++.+-
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~ 59 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIA 59 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998873
No 431
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.15 E-value=0.084 Score=48.87 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.5
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
-.+.|+|++|+||||+++.+-
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHhc
Confidence 468999999999999998873
No 432
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=89.11 E-value=0.15 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.0
Q ss_pred eEEEeccCCCchhHHHhhhHhh
Q psy14891 37 KILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l 58 (359)
-++|+|+.||||||++|++-.+
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhh
Confidence 4789999999999999998543
No 433
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.03 E-value=0.17 Score=44.69 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=18.4
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
--+||.|++|+||||+++.+-
T Consensus 40 ~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999998873
No 434
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.02 E-value=0.17 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.5
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
--+||.|++|+||||+++.+-
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHH
Confidence 358999999999999998874
No 435
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.00 E-value=0.16 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=18.8
Q ss_pred eEEEeccCCCchhHHHhhhHhh
Q psy14891 37 KILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l 58 (359)
-+.|+|+.||||||+++-+--+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcC
Confidence 4689999999999999988644
No 436
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.95 E-value=0.39 Score=42.94 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.4
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
....+||.|++|+||||+++.+-
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 34578999999999999998863
No 437
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.94 E-value=0.17 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=18.7
Q ss_pred eEEEeccCCCchhHHHhhhHhh
Q psy14891 37 KILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l 58 (359)
.++++|++||||||++..+-..
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999887533
No 438
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.84 E-value=0.17 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.0
Q ss_pred eEEEeccCCCchhHHHhhhHhhc
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~ 59 (359)
++.|+|+.||||||++|-+--++
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 57899999999999998874333
No 439
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.82 E-value=0.19 Score=44.38 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=19.4
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
..+++-|+|++||||||+.+.+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHH
Confidence 36789999999999999998874
No 440
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=88.74 E-value=0.17 Score=53.05 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=18.6
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
-++|+|+.||||||++|++-.
T Consensus 609 i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 478999999999999999854
No 441
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.63 E-value=0.19 Score=46.31 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.6
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
--++|.|++|+||||+++.+-
T Consensus 38 ~~lll~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 468999999999999998873
No 442
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.62 E-value=0.24 Score=42.68 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.4
Q ss_pred eeEEEeccCCCchhHHHhhhHh
Q psy14891 36 IKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr~ 57 (359)
..|.|.|+.||||||+.+.+.-
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998854
No 443
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.60 E-value=0.18 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.3
Q ss_pred eEEEeccCCCchhHHHhhhHhhc
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~ 59 (359)
++.|+|+.||||||++|-+--++
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999998875443
No 444
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.46 E-value=0.19 Score=47.48 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=17.4
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
++|.|++||||||++.|+-
T Consensus 64 ~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7888999999999999984
No 445
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.44 E-value=0.18 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=18.8
Q ss_pred eEEEeccCCCchhHHHhhhHhhc
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~ 59 (359)
++.|+|+.||||||++|-+--++
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 57899999999999998874333
No 446
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.41 E-value=0.38 Score=44.13 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.6
Q ss_pred hcceeEEEeccCCCchhHHHhhhH
Q psy14891 33 KHVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 33 ~~~~kvLllG~~~sGKST~~kqmr 56 (359)
.....|||.|.+|+|||++++.+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHH
Confidence 345689999999999999998874
No 447
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.22 E-value=0.21 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=18.5
Q ss_pred eEEEeccCCCchhHHHhhhHhh
Q psy14891 37 KILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l 58 (359)
-++++|++||||||+++.+-..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHH
Confidence 4789999999999999887543
No 448
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=88.17 E-value=0.06 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=18.1
Q ss_pred EEEeccCCCchhHHHhhhHhhc
Q psy14891 38 ILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l~ 59 (359)
+.|+|+.||||||+++.+.-+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4688999999999998875443
No 449
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=88.10 E-value=0.21 Score=53.69 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.2
Q ss_pred eEEEeccCCCchhHHHhhhHhh
Q psy14891 37 KILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l 58 (359)
-++|+|+.+|||||++||+-++
T Consensus 791 i~~ItGpNgsGKSTlLr~iGl~ 812 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQAGLL 812 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4789999999999999998554
No 450
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=88.07 E-value=0.22 Score=44.77 Aligned_cols=21 Identities=33% Similarity=0.790 Sum_probs=19.1
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.+++++|.+++||||+++.+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~ 120 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred hheEEeCCCCCCHHHHHHHHh
Confidence 599999999999999998864
No 451
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.04 E-value=0.24 Score=43.82 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=19.9
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...+++.|.||+||||++.++-
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 45678999999999999998884
No 452
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.02 E-value=0.19 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.3
Q ss_pred eEEEeccCCCchhHHHhhhHhh
Q psy14891 37 KILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l 58 (359)
.+.|+|+.||||||++|-+--+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999876433
No 453
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.02 E-value=0.25 Score=43.39 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.3
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.-|.+-|..||||||+.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 457888999999999998875
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.01 E-value=0.2 Score=49.96 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=17.2
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+-|+|+.||||||++|-+-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~ 46 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILA 46 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 36799999999999988764
No 455
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.94 E-value=0.21 Score=50.50 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=19.1
Q ss_pred eEEEeccCCCchhHHHhhhHhhc
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIH 59 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~ 59 (359)
++.|+|+.||||||++|-+--++
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 58899999999999998874333
No 456
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.89 E-value=0.22 Score=50.53 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 57899999999999988764
No 457
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.85 E-value=0.21 Score=50.63 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+-|+|+.||||||++|-+-
T Consensus 105 i~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHh
Confidence 57899999999999988764
No 458
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.83 E-value=0.22 Score=46.64 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.4
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-|+|.|+++|||||+.+.+.
T Consensus 9 lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHH
Confidence 47889999999999988764
No 459
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.76 E-value=0.21 Score=53.17 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|+|+.||||||++|++-
T Consensus 664 i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999983
No 460
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.65 E-value=0.23 Score=46.19 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=17.7
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.|+|.|+.||||||+.+.+-
T Consensus 7 ~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999988764
No 461
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.61 E-value=0.23 Score=46.94 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=19.7
Q ss_pred EEEeccCCCchhHHHhhhHhh-cCCC
Q psy14891 38 ILLLGAGESGKSTLVKQMKII-HNDG 62 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr~l-~~~g 62 (359)
.+|+|+.|||||||+..+-.. ++.+
T Consensus 26 ~~i~G~NGaGKTTll~ai~~al~g~~ 51 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFALFGNG 51 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc
Confidence 568999999999999988633 4433
No 462
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.52 E-value=0.26 Score=41.67 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=17.2
Q ss_pred eeEEEeccCCCchhHHHhhh
Q psy14891 36 IKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqm 55 (359)
.=||+.|.+|+||||+.-.+
T Consensus 17 ~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 35899999999999998665
No 463
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.49 E-value=0.23 Score=49.38 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=18.7
Q ss_pred eEEEeccCCCchhHHHhhhHh
Q psy14891 37 KILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~ 57 (359)
-++|+|++|||||||++|+--
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 588999999999999999853
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.47 E-value=0.26 Score=42.70 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.9
Q ss_pred ceeEEEeccCCCchhHHHhhh
Q psy14891 35 VIKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqm 55 (359)
...|++.|+++|||||+...+
T Consensus 34 g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 346899999999999998665
No 465
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.45 E-value=0.25 Score=44.91 Aligned_cols=20 Identities=35% Similarity=0.601 Sum_probs=18.1
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+||.|++|+||||+++.+-
T Consensus 49 ~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998873
No 466
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.24 E-value=0.52 Score=44.41 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=18.9
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...++|+|.+||||||+.+.+-
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 3569999999999999998763
No 467
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.16 E-value=0.28 Score=45.89 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=19.8
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+...+.++|.+|+||||+++.+-
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~ 77 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFG 77 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 45678999999999999999873
No 468
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.09 E-value=0.34 Score=45.14 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.0
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
.--++|.|++|+||||+++.+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4468999999999999998873
No 469
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.05 E-value=0.64 Score=43.51 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=19.8
Q ss_pred ceeEEEeccCCCchhHHHhhhHh
Q psy14891 35 VIKILLLGAGESGKSTLVKQMKI 57 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr~ 57 (359)
...|||.|++|+||||+.+.+--
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999843
No 470
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.04 E-value=0.26 Score=44.75 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
.+||.|++|+||||+++.+
T Consensus 69 ~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5999999999999999876
No 471
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.03 E-value=0.3 Score=49.13 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=25.2
Q ss_pred HHHHHHHHhHH-hhhcceeEEEeccCCCchhHHHhhhH
Q psy14891 20 EIDKQLTQLSL-QEKHVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 20 ~Id~~l~~~~~-~~~~~~kvLllG~~~sGKST~~kqmr 56 (359)
++.+.+.+... ...+...|+|.|.+||||||+.+.+.
T Consensus 380 eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La 417 (573)
T 1m8p_A 380 EVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQ 417 (573)
T ss_dssp HHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHH
Confidence 35555544331 12234678999999999999999884
No 472
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.01 E-value=0.25 Score=49.04 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.3
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.-|+|+|.+||||||+.+++.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999983
No 473
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.00 E-value=0.18 Score=44.99 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.8
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-+||.|++|+||||+++.+-
T Consensus 46 ~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 48999999999999998873
No 474
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.99 E-value=0.54 Score=43.54 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+|+.|+.|+||||+++.+-
T Consensus 48 ~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999873
No 475
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.98 E-value=0.25 Score=50.04 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=17.6
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~ 403 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLA 403 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998774
No 476
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.94 E-value=0.26 Score=49.23 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.2
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36789999999999988763
No 477
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=86.94 E-value=0.21 Score=50.67 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=18.0
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||+++.+-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~ 66 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALS 66 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHh
Confidence 58999999999999988874
No 478
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.88 E-value=0.26 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.9
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
.--++|.|++|+||||+++.+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~ 66 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVL 66 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999998873
No 479
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.69 E-value=0.26 Score=49.66 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=18.5
Q ss_pred eEEEeccCCCchhHHHhhhHhh
Q psy14891 37 KILLLGAGESGKSTLVKQMKII 58 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l 58 (359)
++.|+|+.||||||++|-+--+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999877433
No 480
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.65 E-value=0.28 Score=46.13 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=17.4
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
++|.|++||||||++.|+-
T Consensus 64 v~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999999984
No 481
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=86.62 E-value=0.23 Score=52.80 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=17.9
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|+|+.||||||++|++-
T Consensus 675 i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHH
Confidence 37899999999999999974
No 482
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.61 E-value=0.29 Score=44.24 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=19.3
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...+||.|++|+||||+++.+-
T Consensus 50 ~~~vll~G~~GtGKT~la~~la 71 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLA 71 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998874
No 483
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.52 E-value=0.29 Score=46.50 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=19.1
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
.-.++++|+.||||||++|.+-
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLL 56 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHH
Confidence 4478999999999999998774
No 484
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=86.52 E-value=0.43 Score=47.29 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=24.7
Q ss_pred HHHHHHHhHH-hhhcceeEEEeccCCCchhHHHhhh
Q psy14891 21 IDKQLTQLSL-QEKHVIKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 21 Id~~l~~~~~-~~~~~~kvLllG~~~sGKST~~kqm 55 (359)
+.+.|.+... +.++...|.|.|.+||||||+.+.+
T Consensus 380 V~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~L 415 (511)
T 1g8f_A 380 VVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIAL 415 (511)
T ss_dssp HHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHH
T ss_pred hHHHHHHhcccccccceEEEecccCCCCHHHHHHHH
Confidence 4444544331 2334578999999999999999887
No 485
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.41 E-value=0.3 Score=48.76 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=17.5
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
.+.|+|+.||||||++|-+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 56799999999999988774
No 486
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=86.28 E-value=0.3 Score=45.64 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=18.1
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++|.|++|+||||+++.+-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~ 65 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLW 65 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998874
No 487
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.25 E-value=0.29 Score=49.58 Aligned_cols=19 Identities=32% Similarity=0.751 Sum_probs=17.1
Q ss_pred EEEeccCCCchhHHHhhhH
Q psy14891 38 ILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 38 vLllG~~~sGKST~~kqmr 56 (359)
+.|+|+.||||||++|-+-
T Consensus 381 v~iiG~NGsGKSTLlk~l~ 399 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLA 399 (608)
T ss_dssp EEEESCTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 6899999999999998774
No 488
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.15 E-value=0.62 Score=43.79 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.4
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
...+||.|++|+||||+++.+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 4469999999999999999874
No 489
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.13 E-value=0.32 Score=45.03 Aligned_cols=21 Identities=43% Similarity=0.555 Sum_probs=18.5
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
--|||.|++|+||||+++.+-
T Consensus 46 ~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 358999999999999999874
No 490
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.11 E-value=0.61 Score=43.53 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.3
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
--++|.|++|+||||+++.+-
T Consensus 46 ~~vll~G~~G~GKT~la~~l~ 66 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIF 66 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 368999999999999998873
No 491
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=86.06 E-value=0.19 Score=48.01 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.2
Q ss_pred eEEEeccCCCchhHHHhhhHhhcC
Q psy14891 37 KILLLGAGESGKSTLVKQMKIIHN 60 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr~l~~ 60 (359)
.+.|+|+.||||||+++-+..+.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999999999877765
No 492
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=85.79 E-value=0.34 Score=44.68 Aligned_cols=21 Identities=43% Similarity=0.532 Sum_probs=18.6
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
..|||.|++|+|||++++.+-
T Consensus 52 ~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 359999999999999998873
No 493
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.75 E-value=0.37 Score=41.88 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=18.0
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.-|++.|..||||||+++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 457888999999999998863
No 494
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=85.54 E-value=0.35 Score=44.86 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=17.3
Q ss_pred eEEEeccCCCchhHHHhhhH
Q psy14891 37 KILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqmr 56 (359)
-++++|++||||||++..+-
T Consensus 107 vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47888999999999998774
No 495
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.52 E-value=0.35 Score=44.09 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=17.4
Q ss_pred eeEEEeccCCCchhHHHhhhH
Q psy14891 36 IKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 36 ~kvLllG~~~sGKST~~kqmr 56 (359)
.-+||.|++|+|||++++.+-
T Consensus 37 ~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346667999999999999873
No 496
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=85.52 E-value=0.58 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.4
Q ss_pred cceeEEEeccCCCchhHHHhhh
Q psy14891 34 HVIKILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqm 55 (359)
+..+++++|.+++||||++..+
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L 182 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRI 182 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHH
Confidence 3468999999999999999876
No 497
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.47 E-value=0.33 Score=42.72 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=16.2
Q ss_pred cceeEEEeccCCCchhHHHhhhH
Q psy14891 34 HVIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 34 ~~~kvLllG~~~sGKST~~kqmr 56 (359)
+..-|++.|..||||||+++.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44568889999999999998763
No 498
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.37 E-value=0.31 Score=49.94 Aligned_cols=19 Identities=42% Similarity=0.590 Sum_probs=16.5
Q ss_pred eEEEeccCCCchhHHHhhh
Q psy14891 37 KILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 37 kvLllG~~~sGKST~~kqm 55 (359)
.+.|+|++||||||+++-+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEECSTTSSHHHHHTTT
T ss_pred EEEEEeeCCCCHHHHHHHH
Confidence 3789999999999999754
No 499
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=85.35 E-value=0.38 Score=40.70 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.1
Q ss_pred EEEeccCCCchhHHHhhh
Q psy14891 38 ILLLGAGESGKSTLVKQM 55 (359)
Q Consensus 38 vLllG~~~sGKST~~kqm 55 (359)
+++.|+.+|||||++-|+
T Consensus 6 ~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSF 23 (184)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578899999999998544
No 500
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=85.26 E-value=0.56 Score=45.83 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.2
Q ss_pred ceeEEEeccCCCchhHHHhhhH
Q psy14891 35 VIKILLLGAGESGKSTLVKQMK 56 (359)
Q Consensus 35 ~~kvLllG~~~sGKST~~kqmr 56 (359)
.-.+||.|++|+||||+++.+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 4478999999999999998873
Done!