RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14891
(359 letters)
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 361 bits (928), Expect = e-124
Identities = 134/365 (36%), Positives = 206/365 (56%), Gaps = 11/365 (3%)
Query: 1 MGACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHN 60
MG +S +E+ A RS ID+ L + + ++KILLLGAGESGKST +KQM+IIH
Sbjct: 1 MGCTLS--AEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHG 58
Query: 61 DGFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFD--- 117
F + E F+PT+ N++ M+ ++ L I KN+ + +++
Sbjct: 59 QDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAA 118
Query: 118 ---EEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNA 174
E ++ A+ ALW+D G++ A R E++L +S Y +N++++ Y+P+
Sbjct: 119 QGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQ 178
Query: 175 TDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYD 234
D+L AR T GI E +F + MVDVGGQRS+R++W CFD V ++L++V+ S +D
Sbjct: 179 QDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFD 238
Query: 235 MTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSD 294
L+ED NRL ESLN+FE +VNNR F S ILFLNK DL EK+ ++ Y +
Sbjct: 239 QVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVV--SIKDYFLE 296
Query: 295 FKGPDFDVDSGALFIQHKFALRNHNSA-KVIYPHFTTATDTSNVQTVFHAVMDLVIKINL 353
F+G + F+ F + + + +Y HFTTA +T N++ VF V D ++ NL
Sbjct: 297 FEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356
Query: 354 QQVTL 358
+Q+ L
Sbjct: 357 KQLML 361
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 354 bits (910), Expect = e-122
Identities = 154/359 (42%), Positives = 216/359 (60%), Gaps = 7/359 (1%)
Query: 2 GACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHND 61
G +S +E+ A RS ID+ L + + +K+LLLGAGESGKST+VKQMKIIH
Sbjct: 1 GCTLS--AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEA 58
Query: 62 GFTREELESFKPTVMDNLLSSMKYVLGGMGILRINLQSAKNKNYAKTILSTMCCFDEEFQ 121
G++ EE + +K V N + S+ ++ MG L+I+ A + A+ + +E F
Sbjct: 59 GYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARADDARQLFVLAGAAEEGF- 117
Query: 122 MLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFENMERICDLKYVPNATDVLRAR 181
M +++ + LW+D GV+ R EY+LNDSA Y +++RI Y+P DVLR R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 182 VRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDS 241
V+T GI+ET+F + M DVGGQRS+R+KWI+CF+ V A+++ VALS YD+ L ED
Sbjct: 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDE 237
Query: 242 SVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFKGPDFD 301
+NR+ ES+ LF+ + NN++F + S ILFLNK DLF EKI S L ++ G
Sbjct: 238 EMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKS--PLTICYPEYAGS-NT 294
Query: 302 VDSGALFIQHKFALRNHNSA-KVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
+ A +IQ +F N K IY HFT ATDT NVQ VF AV D++IK NL+ L
Sbjct: 295 YEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 350 bits (899), Expect = e-119
Identities = 140/394 (35%), Positives = 208/394 (52%), Gaps = 35/394 (8%)
Query: 1 MGACIS-----LDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQM 55
MG + +EE + + +I+KQL + + ++LLLGAGESGKST+VKQM
Sbjct: 1 MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQM 60
Query: 56 KIIHNDGFTRE---------------ELESFKPTVMDNLLSSMKYVLGGMGILRINLQSA 100
+I+H +GF E E + + +NL +++ ++ M L ++ A
Sbjct: 61 RILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELA 120
Query: 101 KNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYELNDSALYLFE 160
+N + +F P+ ALW+D GVR R EY+L D A Y +
Sbjct: 121 NPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLD 180
Query: 161 NMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDD 220
++ I YVP+ D+LR RV T+GI ET F++ + +M DVGGQR +RRKWI CF+D
Sbjct: 181 KIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFND 240
Query: 221 VKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREK 280
V A+++VVA S Y+M + ED+ NRL E+LNLF+ + NNR+ R S ILFLNK DL EK
Sbjct: 241 VTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEK 300
Query: 281 ILYSGRHLRYYLSDFK------------GPDFDVDSGALFIQHKFALRNH---NSAKVIY 325
+L + Y +F G D V FI+ +F + + Y
Sbjct: 301 VLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCY 360
Query: 326 PHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
PHFT A DT N++ VF+ D++ +++L+Q LL
Sbjct: 361 PHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 341 bits (876), Expect = e-117
Identities = 136/329 (41%), Positives = 199/329 (60%), Gaps = 4/329 (1%)
Query: 31 QEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLGGM 90
+ +K+LLLG GESGKST +KQM+IIH G++ E+ F V N+ ++M+ ++ M
Sbjct: 3 DARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAM 62
Query: 91 GILRINLQSAKNKNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRLAVARGYEYE 150
L+I + NK + L ++ A+ +LW D G++ R EY+
Sbjct: 63 DTLKIPYKYEHNKAH--AQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQ 120
Query: 151 LNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQ 210
L+DS Y +++R+ D Y+P DVLR RV T GIIE F L I MVDVGGQRS+
Sbjct: 121 LSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSE 180
Query: 211 RRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILF 270
RRKWI+CF++V +++++VALS YD L+E + NR++ES LF ++ +F+ +S ILF
Sbjct: 181 RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 240
Query: 271 LNKFDLFREKILYSGRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTT 330
LNK DL EKI+YS HL Y ++ GP D + FI F N +S K+IY HFT
Sbjct: 241 LNKKDLLEEKIMYS--HLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 298
Query: 331 ATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
ATDT N++ VF AV D ++++NL++ L+
Sbjct: 299 ATDTENIRFVFAAVKDTILQLNLKEYNLV 327
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 333 bits (855), Expect = e-113
Identities = 113/352 (32%), Positives = 186/352 (52%), Gaps = 21/352 (5%)
Query: 29 SLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDNLLSSMKYVLG 88
H+ K+LLLGAGESGKST+ KQ+K++ GF EL+S+ P + N+ ++K +
Sbjct: 3 MGSGIHIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHD 62
Query: 89 GMGILRINLQSAKNKNYAKTILST------MCCFDEEFQMLPDVSTAMLALWQDRGVRLA 142
G N + + ++ + + ++ D++ + LW+D ++
Sbjct: 63 GTKEFAQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQET 122
Query: 143 VARGYEYELNDSALYLFENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGES----- 197
ARG E ++ D YL EN++R+ D+ Y+P DVL ARVRT G++E F
Sbjct: 123 CARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSG 182
Query: 198 -IVNMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQV 256
+ + DVGGQR++RRKWI+ F+ V AV++ A+S YD TL ED NR+ E+ LF+ V
Sbjct: 183 EVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 242
Query: 257 VNNRYFREASFILFLNKFDLFREKILYSGRHLRYYLSDFK---GPDFDVDSGALFIQHKF 313
+ F + SF+LFLNKFD+F +K+L ++ + D++ +++ F++ KF
Sbjct: 243 LKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKF 302
Query: 314 ALRNHNSA------KVIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQVTLL 359
+ + +V + TTA D V+ F V + + + NL + LL
Sbjct: 303 EELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 354
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 3e-09
Identities = 51/289 (17%), Positives = 88/289 (30%), Gaps = 97/289 (33%)
Query: 1 MGACISLD----SEEIKAQRRSDEIDKQLTQ---LSLQEKHVIK-----ILLLGAGESGK 48
MG +D S+ + + D S+ + ++ + + GE GK
Sbjct: 1631 MG----MDLYKTSKAAQDVW--NRADNHFKDTYGFSILD--IVINNPVNLTIHFGGEKGK 1682
Query: 49 STLVKQMKIIHN---DGFTREELESFKPTVMDNLLSSMKYVLGG-MGILRI--NLQSAKN 102
+I DG + E + FK ++ +S Y G+L Q A
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTE-KIFKE--INEHSTS--YTFRSEKGLLSATQFTQPA-- 1735
Query: 103 KNYAKTILSTMCCFDEEFQMLPDVSTAMLALWQDRGVRL---AVARGY---EYELNDSAL 156
+ + A + +G+ A G+ EY +AL
Sbjct: 1736 ------LTL--------------MEKAAFEDLKSKGLIPADATFA-GHSLGEY----AAL 1770
Query: 157 -----YL-FENMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQ 210
+ E + +V+ R T + LG S M+ + R
Sbjct: 1771 ASLADVMSIE------------SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR-- 1816
Query: 211 RRKWIYCFDDVKAVLYVVALSGYDMT-LLEDSSVNRLDESLNL-FEQVV 257
+ +A+ YVV G L+E VN N+ +Q V
Sbjct: 1817 ----VAASFSQEALQYVVERVGKRTGWLVE--IVN-----YNVENQQYV 1854
Score = 41.2 bits (96), Expect = 6e-04
Identities = 30/227 (13%), Positives = 61/227 (26%), Gaps = 67/227 (29%)
Query: 118 EEFQM-LPDVSTAMLALWQDRGVRLAVARGYE----YELNDSALYL-FENMERICDLKYV 171
E+F LP+ + D E EL +L + + + + V
Sbjct: 35 EQFNKILPEPTEG---FAAD----------DEPTTPAEL--VGKFLGY--VSSLVEPSKV 77
Query: 172 PNATDVLRARVRTNGIIETNFRLGESI----VNMV-DVGGQRSQRRKWIYCFDDVKAVLY 226
VL + E + G I ++ + + ++ I + + +
Sbjct: 78 GQFDQVLNLCLTE---FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 227 VVALSGYDMTLLEDSSVNRLDESLNLFE----QVVNNRYFREASFILFLNKFDLFREKIL 282
+ L + + L Q + YF E R+ L
Sbjct: 135 RPFDKKSNSALFRAVG----EGNAQLVAIFGGQGNTDDYFEE------------LRD--L 176
Query: 283 YSGRHLRY--YLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPH 327
Y Y + D + A + +R A+ ++
Sbjct: 177 YQ----TYHVLVGDL------IKFSAETLSE--LIRTTLDAEKVFTQ 211
Score = 35.0 bits (80), Expect = 0.041
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 33/119 (27%)
Query: 232 GYDMTLLEDSSVNRLDESLNL----FEQVVNNRYFREA---SFILFLNKFDLFREKILYS 284
GY +L+E S V + D+ LNL FE Y + L + + ++ +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFEN----CYLEGNDIHALAAKLLQEN--DTTLVKT 119
Query: 285 GRHLRYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKVIYPHFTTATDTSNVQ--TVF 341
++ Y++ A + + + NSA A N Q +F
Sbjct: 120 KELIKNYIT------------ARIMAKRPFDKKSNSA------LFRAVGEGNAQLVAIF 160
Score = 35.0 bits (80), Expect = 0.045
Identities = 73/451 (16%), Positives = 126/451 (27%), Gaps = 180/451 (39%)
Query: 6 SLDSEEIKAQRRSDEIDK------QLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKI-- 57
L E ++ E+ K + + +K L A G + L + I
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS--NSALFRAVGEGNAQL---VAIFG 161
Query: 58 ---IHNDGFTREEL----ESFKPTVMDNLLSSMKYVLG---------------GMGILR- 94
+D F EEL +++ V D L+ L G+ IL
Sbjct: 162 GQGNTDDYF--EELRDLYQTYHVLVGD-LIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 95 -INLQSAKNKNYAKTI--------LSTMCCF-----------DEEFQMLPDVST------ 128
N + +K+Y +I + + + E L +
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 129 --AMLAL---WQD--RGVRLAV-------ARGYE----YELNDSAL-YLFEN-------M 162
+A W+ VR A+ R YE L S L EN M
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 163 ERICDLKYVPNATDVLRARVR-TNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDV 221
I +L + ++ V TN + ++ S+VN G ++
Sbjct: 339 LSISNLT-----QEQVQDYVNKTNSHLPAGKQVEISLVN-----GAKN------------ 376
Query: 222 KAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFREKI 281
VV SG +L LNL R+A L + +I
Sbjct: 377 ----LVV--SGPPQSL----------YGLNL--------TLRKAK-----APSGLDQSRI 407
Query: 282 LYSGRHLRY--------------YL--------SDFKGPDFDVDSGALFIQHKFALRNHN 319
+S R L++ L D + ++ + I
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--------- 458
Query: 320 SAKVIYPHFTTATDTSNVQT-VFHAVMDLVI 349
+Y +D + + ++D +I
Sbjct: 459 ----VY-DTFDGSDLRVLSGSISERIVDCII 484
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 3e-08
Identities = 70/461 (15%), Positives = 130/461 (28%), Gaps = 162/461 (35%)
Query: 17 RSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQM----KIIHNDGF--------- 63
R +L Q L+ + +L+ G SGK+ + + K+ F
Sbjct: 133 RLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 64 ---TREELESFKPTVMDNLLSSMKYVLG----GMGILRINLQSAKN--------KNYAKT 108
LE ++ LL + +++ + S + K Y
Sbjct: 192 CNSPETVLE-----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 109 ILSTMCCFDEEFQMLPDVSTA-----------MLALWQDRGV--RLAVARGYEYELND-- 153
+L +L +V A +L + + V L+ A L+
Sbjct: 247 LL-----------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 154 SALYLFENME--------RICDL-----KYVPNATDVLRARVRTNGIIETNFR------L 194
L E R DL P ++ +R N++ L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 195 GESIVNMVDVGGQRSQRRKWIYCF---DDVK---AVLYVV--ALSGYD----MTLLEDSS 242
I + ++V R+ + +L ++ + D + L S
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 243 -VNR-------------------LDESLNLFEQVVNNRYFREASFILFLNKFDLFREKI- 281
V + L+ L +V + Y +F + DL +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKTF----DSDDLIPPYLD 470
Query: 282 --LYS--GRHL-------------RYYLSDFKGPDFDVDSGALFIQHKFALRNHNSAKV- 323
YS G HL +L DF F++ K +R+ ++A
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFL------DFR------FLEQK--IRHDSTAWNA 516
Query: 324 ------------IYPHFTTATDTSNVQTVFHAVMDLVIKIN 352
Y + D + V +A++D + KI
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLV-NAILDFLPKIE 556
Score = 50.2 bits (119), Expect = 7e-07
Identities = 61/454 (13%), Positives = 127/454 (27%), Gaps = 153/454 (33%)
Query: 1 MGACISLDSEEIKAQRRSDEIDKQLTQL-----------------------------SL- 30
+ C S ++ Q+ +ID T L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 31 -----QEKHVIK-------ILLL----GAGESGKSTLVKQMKIIH-NDGFTREELESFKP 73
Q ILL + + + + H + T +E++S
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 74 TVMDN--------------LLSSMKYVLGGM---GILRI-NLQSAKNKNYAKTILSTMCC 115
+D S+ + G+ N + I S++
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 116 FD--------EEFQMLPD---VSTAMLA-LWQD---RGVRLAVARGYEYELNDSALYLFE 160
+ + + P + T +L+ +W D V + V +L+ +L +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-----KLHKYSLVEKQ 420
Query: 161 NMERICDLKYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDD 220
E +P+ L+ + +E + L SIV+ + + + DD
Sbjct: 421 PKESTI---SIPSIYLELKVK------LENEYALHRSIVD------HYNIPKT--FDSDD 463
Query: 221 VKAVL---YVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLF 277
+ Y + G+ + +E E + LF +FL+ F
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIE------HPERMTLFRM-------------VFLD-FRFL 503
Query: 278 REKILYSG-------------RHLRYYLSDF--KGPDFDVDSGALFIQHKFALRNHNSAK 322
+KI + + L++Y P ++ A+ F L
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL---DF-LPKIEENL 559
Query: 323 VIYPHFTTATDTSNVQTVFHAVMDLVIKINLQQV 356
+ + T ++ A + + + +QV
Sbjct: 560 ICSKY------TDLLRIALMAEDEAIFEEAHKQV 587
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 49.1 bits (118), Expect = 3e-07
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
D+GG RR W F +V ++++V D++ R DE+ + + N
Sbjct: 70 TTFDLGGHIQARRLWKDYFPEVNGIVFLV-----------DAADPERFDEARVELDALFN 118
Query: 259 NRYFREASFILFLNKFDL 276
++ F++ NK D
Sbjct: 119 IAELKDVPFVILGNKIDA 136
Score = 34.1 bits (79), Expect = 0.037
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 21 IDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHND------GFTREELES--FK 72
L L L KH K+L LG +GK+TL+ +K T EEL K
Sbjct: 10 FRDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68
Query: 73 PTVMDNLLSSMKYVLGGMGILR 94
T D LGG R
Sbjct: 69 FTTFD---------LGGHIQAR 81
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 48.8 bits (117), Expect = 4e-07
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
D+GG RR W + ++++V D + RL ES + ++
Sbjct: 72 TTFDLGGHIQARRVWKNYLPAINGIVFLV-----------DCADHERLLESKEELDSLMT 120
Query: 259 NRYFREASFILFLNKFDL 276
+ ++ NK D
Sbjct: 121 DETIANVPILILGNKIDR 138
Score = 31.5 bits (72), Expect = 0.25
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 18/78 (23%)
Query: 25 LTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHND------GFTREELE--SFKPTVM 76
L L L +K K++ LG +GK+TL+ +K T EEL T
Sbjct: 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 74
Query: 77 DNLLSSMKYVLGGMGILR 94
D LGG R
Sbjct: 75 D---------LGGHIQAR 83
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 48.4 bits (116), Expect = 5e-07
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
M D+GGQ S R W + + + V+ VV DS+ R+ + +++
Sbjct: 68 LMWDIGGQESLRSSWNTYYTNTEFVIVVV-----------DSTDRERISVTREELYKMLA 116
Query: 259 NRYFREASFILFLNKFDL 276
+ R+A ++F NK D+
Sbjct: 117 HEDLRKAGLLIFANKQDV 134
Score = 28.4 bits (64), Expect = 2.3
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 36 IKILLLGAGESGKSTLVKQMK------IIHNDGFTREELE 69
K++++G +GK+T++ Q G EE+
Sbjct: 22 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV 61
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 48.0 bits (115), Expect = 8e-07
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
N+ DVGGQ+S R W F+ +++VV DS+ R+ + + ++
Sbjct: 65 NIWDVGGQKSLRSYWRNYFESTDGLIWVV-----------DSADRQRMQDCQRELQSLLV 113
Query: 259 NRYFREASFILFLNKFDL 276
A+ ++F NK DL
Sbjct: 114 EERLAGATLLIFANKQDL 131
Score = 29.1 bits (66), Expect = 1.7
Identities = 11/46 (23%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 30 LQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTV 75
Q++ +++L+LG +GK+T++K+ E++++ PT+
Sbjct: 13 KQKERELRLLMLGLDNAGKTTILKKFNG--------EDVDTISPTL 50
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 48.0 bits (115), Expect = 8e-07
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
M D+GGQ S R W + + + V+ VV DS+ R+ + +++
Sbjct: 63 LMWDIGGQESLRSSWNTYYTNTEFVIVVV-----------DSTDRERISVTREELYKMLA 111
Query: 259 NRYFREASFILFLNKFDL 276
+ R+A ++F NK D+
Sbjct: 112 HEDLRKAGLLIFANKQDV 129
Score = 29.9 bits (68), Expect = 0.88
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 28 LSLQEKHVIKILLLGAGESGKSTLVKQMK------IIHNDGFTREELE 69
L K++++G +GK+T++ Q G EE+
Sbjct: 9 WRLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIV 56
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 47.6 bits (114), Expect = 9e-07
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
N+ D+GGQR R W F++ ++YV+ DS+ R +E+ +++
Sbjct: 63 NVWDIGGQRKIRPYWRSYFENTDILIYVI-----------DSADRKRFEETGQELTELLE 111
Query: 259 NRYFREASFILFLNKFDL 276
++F NK DL
Sbjct: 112 EEKLSCVPVLIFANKQDL 129
Score = 28.7 bits (65), Expect = 2.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 25 LTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTV 75
L +L ++ILLLG +GK+TL+KQ+ E++ PT
Sbjct: 6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLAS--------EDISHITPTQ 48
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 47.2 bits (113), Expect = 1e-06
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
+ D+GGQ R W F D AV+YVV DS+ +R+ + + +++
Sbjct: 69 EVWDLGGQTGVRPYWRCYFSDTDAVIYVV-----------DSTDRDRMGVAKHELYALLD 117
Query: 259 NRYFREASFILFLNKFDL 276
R++ ++F NK DL
Sbjct: 118 EDELRKSLLLIFANKQDL 135
Score = 29.1 bits (66), Expect = 1.6
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 29 SLQEKHVIKILLLGAGESGKSTLVKQMK------IIHNDGFTREELE--SFKPTVMD 77
L I++L+LG +GK++++ ++ + G E L+ + V D
Sbjct: 16 LLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWD 72
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 46.8 bits (112), Expect = 1e-06
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
+ DVGGQ R W + F + + +++VV DS+ R++E+ +++
Sbjct: 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----------DSNDRERVNEAREELMRMLA 95
Query: 259 NRYFREASFILFLNKFDL 276
R+A ++F NK DL
Sbjct: 96 EDELRDAVLLVFANKQDL 113
Score = 29.1 bits (66), Expect = 1.3
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 36 IKILLLGAGESGKSTLVKQMK------IIHNDGFTREELE--SFKPTVMD 77
++IL++G +GK+T++ ++K I GF E +E + TV D
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD 50
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 46.9 bits (112), Expect = 1e-06
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
N+ D+GGQ S R W + D AV++VV DS+ +R+ + ++
Sbjct: 65 NVWDLGGQTSIRPYWRCYYADTAAVIFVV-----------DSTDKDRMSTASKELHLMLQ 113
Query: 259 NRYFREASFILFLNKFDL 276
++A+ ++F NK D
Sbjct: 114 EEELQDAALLVFANKQDQ 131
Score = 28.0 bits (63), Expect = 3.8
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 21 IDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMK------IIHNDGFTREELE 69
+L K + +IL+LG +GK+T++ +++ GF E L
Sbjct: 5 FSSMFDKLWGSNKEL-RILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLS 58
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 46.8 bits (112), Expect = 2e-06
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
+ D+GG S R W + + AV+YVV DS +R+ S + ++
Sbjct: 54 QVWDLGGLTSIRPYWRCYYSNTDAVIYVV-----------DSCDRDRIGISKSELVAMLE 102
Query: 259 NRYFREASFILFLNKFDL 276
R+A ++F NK D+
Sbjct: 103 EEELRKAILVVFANKQDM 120
Score = 28.3 bits (64), Expect = 2.6
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 36 IKILLLGAGESGKSTLVKQMK------IIHNDGFTREELE 69
++IL+LG +GK+T++ +++ I GF E +
Sbjct: 8 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVT 47
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 47.6 bits (113), Expect = 2e-06
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
+ DVGGQ R W + F + + +++VV DS+ R++E+ +++
Sbjct: 212 TVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----------DSNDRERVNEAREELMRMLA 260
Query: 259 NRYFREASFILFLNKFDL 276
R+A ++F NK DL
Sbjct: 261 EDELRDAVLLVFANKQDL 278
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 48.0 bits (114), Expect = 3e-06
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
N+ DVGGQ R W + + + +++VV D + +R+DE+ +++N
Sbjct: 369 NVWDVGGQDKIRPLWRHYYTGTQGLIFVV-----------DCADRDRIDEARQELHRIIN 417
Query: 259 NRYFREASFILFLNKFDL 276
+R R+A ++F NK DL
Sbjct: 418 DREMRDAIILIFANKQDL 435
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 45.6 bits (109), Expect = 5e-06
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
+ D+GGQ R W V A++Y+V D++ +++ S N +++
Sbjct: 70 KLWDIGGQPRFRSMWERYCRGVSAIVYMV-----------DAADQEKIEASKNELHNLLD 118
Query: 259 NRYFREASFILFLNKFDL 276
+ ++ NK DL
Sbjct: 119 KPQLQGIPVLVLGNKRDL 136
Score = 28.7 bits (65), Expect = 2.3
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 28 LSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTV 75
+ K +++ L+G SGK+T V + + + E PTV
Sbjct: 15 VPRGSKEEMELTLVGLQYSGKTTFVNVIA-------SGQFNEDMIPTV 55
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 44.6 bits (106), Expect = 1e-05
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
+ DVGGQ R W + F + + +++VV DS+ R+ ES + ++++
Sbjct: 76 TVWDVGGQDKIRPLWRHYFQNTQGLIFVV-----------DSNDRERVQESADELQKMLQ 124
Query: 259 NRYFREASFILFLNKFDL 276
R+A ++F NK D+
Sbjct: 125 EDELRDAVLLVFANKQDM 142
Score = 30.3 bits (69), Expect = 0.68
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 29 SLQEKHVIKILLLGAGESGKSTLVKQMK------IIHNDGFTREELE 69
+ K ++IL++G +GK+T++ ++K I GF E +E
Sbjct: 23 RIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE 69
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 43.6 bits (103), Expect = 2e-05
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 203 DVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN--- 259
V GQ V +++V DS+ NRL + + N
Sbjct: 80 TVPGQVFYNASRKLILRGVDGIVFVA-----------DSAPNRLRANAESMRNMRENLAE 128
Query: 260 --RYFREASFILFLNKFDL 276
+ ++ +NK DL
Sbjct: 129 YGLTLDDVPIVIQVNKRDL 147
Score = 31.3 bits (71), Expect = 0.33
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTRE 66
KI+ G G SGK+T +K + +G E
Sbjct: 15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGE 45
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 43.4 bits (103), Expect = 3e-05
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 200 NMVDVGGQRSQRRKWIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLNLFEQVVN 258
+ D+ GQ R W + + + +A+++V+ DSS R+ + + ++N
Sbjct: 70 TVFDMSGQGRYRNLWEHYYKEGQAIIFVI-----------DSSDRLRMVVAKEELDTLLN 118
Query: 259 NR--YFREASFILFLNKFDL 276
+ R + F NK DL
Sbjct: 119 HPDIKHRRIPILFFANKMDL 138
Score = 28.4 bits (64), Expect = 3.1
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHND--------GFTREELES--FKPTVMD 77
+ +L LG SGK+T++ ++K + GF+ E+ +S TV D
Sbjct: 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFD 73
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 43.4 bits (102), Expect = 3e-05
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 17/122 (13%)
Query: 162 MERICDLKYVPNATDVLRARVRTNGIIETNFRLGESI-VNMVDVGGQRSQRRKWIYC--- 217
++++ K PN T L + TN I + + + + D GQ
Sbjct: 36 IQKVVFHKMSPNETLFLES---TNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92
Query: 218 FDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLF 277
F A++YV+ D ++ RL +++ + + +F +F++K D
Sbjct: 93 FRGTGALIYVI-----DAQDDYMEALTRLHITVSKAYK-----VNPDMNFEVFIHKVDGL 142
Query: 278 RE 279
+
Sbjct: 143 SD 144
Score = 27.2 bits (60), Expect = 6.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 36 IKILLLGAGESGKSTLVK 53
+ILL+G SGKS++ K
Sbjct: 21 PRILLMGLRRSGKSSIQK 38
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 38.8 bits (90), Expect = 0.002
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 22/126 (17%)
Query: 162 MERICDLKYVPNATDVLRARVRTNGIIETNFRLGESI-VNMVDVGGQRS-----QRRKWI 215
M I Y T L A T + ++ R ++ +N+ D GGQ ++
Sbjct: 19 MRSIIFSNYSAFDTRRLGA---TIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKD 75
Query: 216 YCFDDVKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN--RYFREASFILFLNK 273
+ F V+ +++V D + + + +F + + +Y +A + L+K
Sbjct: 76 HIFQMVQVLIHVF-----------DVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHK 124
Query: 274 FDLFRE 279
DL +
Sbjct: 125 MDLVQL 130
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 38.2 bits (89), Expect = 0.002
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 199 VNMVDVGGQRSQRRKWIYCFDD----VKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFE 254
V +VD G R K VK ++++V S D L ++ L + L++ E
Sbjct: 93 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD-STVDPKKLTTTA-EFLVDILSITE 150
Query: 255 QVVNNRYFREASFILFLNKFDLF 277
N ++ NK +LF
Sbjct: 151 SSCENG----IDILIACNKSELF 169
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 38.2 bits (89), Expect = 0.002
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 199 VNMVDVGGQRSQRRKWIYCFDD----VKAVLYVVALSGYDMTLLEDSSVNRLDESLNLFE 254
V +VD G R K VK ++++V S D L ++ L + L++ E
Sbjct: 57 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD-STVDPKKLTTTA-EFLVDILSITE 114
Query: 255 QVVNNRYFREASFILFLNKFDLF 277
N ++ NK +LF
Sbjct: 115 SSCENG----IDILIACNKSELF 133
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 35.9 bits (83), Expect = 0.012
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 199 VNMVDVGGQRSQRRK-WIYCFDDVKAVLYVVALSGYDMTLLEDSS-VNRLDESLN--LFE 254
+ ++D+ G S R + +AV++VV DS+ R + + L++
Sbjct: 56 LTLIDLPGHESLRFQLLDRFKSSARAVVFVV-----------DSAAFQREVKDVAEFLYQ 104
Query: 255 QVVNNRYFREASFILFL-NKFDLF 277
++++ + + +L NK D+
Sbjct: 105 VLIDSMALKNSPSLLIACNKQDIA 128
Score = 27.8 bits (62), Expect = 4.8
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 28 LSLQEKHVIKILLLGAGESGKSTLVKQMK 56
++ + +L +G +SGK+ L ++
Sbjct: 1 MARKSSQR-AVLFVGLCDSGKTLLFVRLL 28
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 35.8 bits (82), Expect = 0.019
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 17/114 (14%)
Query: 169 KYVPNATDVLRARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYC---FDDVKAVL 225
P T L + T+ +F + ++++ GQ + F V A++
Sbjct: 22 NMQPLDTLYLES---TSNPSLEHFSTLIDL-AVMELPGQLNYFEPSYDSERLFKSVGALV 77
Query: 226 YVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNNRYFREASFILFLNKFDLFRE 279
YV+ D +++ L + + + + ++K D E
Sbjct: 78 YVI-----DSQDEYINAITNLAMIIEYAYK-----VNPSINIEVLIHKVDGLSE 121
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 33.8 bits (78), Expect = 0.037
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 29 SLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMD 77
S++ +++ +LG SGKS+L+ + F + + T +
Sbjct: 1 SMRSIPELRLGVLGDARSGKSSLIHR--------FLTGSYQVLEKTESE 41
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 31.7 bits (73), Expect = 0.20
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
Query: 35 VIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMD 77
V K+LLLGA GKS L + F E
Sbjct: 2 VYKVLLLGAPGVGKSALARI--------FGGVEDGPEAEAAGH 36
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.20
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 239 EDSSVNRLDESLNLFE 254
E ++ +L SL L+
Sbjct: 18 EKQALKKLQASLKLYA 33
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 31.0 bits (70), Expect = 0.51
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 19 DEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLV 52
+++ + +L ++ + + +L+LG G GKS+ V
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTV 53
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 30.0 bits (68), Expect = 0.90
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 33 KHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTV 75
+ K++L+G G +GK+T VK+ E + + T+
Sbjct: 13 QVQFKLVLVGDGGTGKTTFVKR--------HLTGEFEKKYVATL 48
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM
barrel, glycos hydrolase, membrane, palmitate; HET: P4G;
1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Length = 642
Score = 30.3 bits (68), Expect = 1.0
Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 21/104 (20%)
Query: 1 MGACISLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHN 60
+ E A +R+ + ++ + ++SL EK + QM +
Sbjct: 15 LSCFFGARQTEASASKRAIDANQIVNRMSLDEK------------------LGQMLMPDF 56
Query: 61 DGFTREELESFKP-TVMDNLLSSM--KYVLGGMGILRINLQSAK 101
+ +E S + T M++ ++S+ KY GG+ + N+++ K
Sbjct: 57 RNWQKEGESSPQALTKMNDEVASLVKKYQFGGIILFAENVKTTK 100
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 29.5 bits (67), Expect = 1.1
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 31 QEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTVMD 77
++ + ++++ GAG GKS+LV + F + +++ PT+ D
Sbjct: 4 EQSNDYRVVVFGAGGVGKSSLVLR--------FVKGTFRDTYIPTIED 43
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 29.1 bits (66), Expect = 1.5
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 31 QEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTV 75
Q+ + K++L+G GKSTL F + + +P
Sbjct: 19 QKDGIFKVMLVGESGVGKSTLAGT--------FGGLQGDSAHEPEN 56
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 29.3 bits (65), Expect = 1.7
Identities = 9/50 (18%), Positives = 13/50 (26%)
Query: 179 RARVRTNGIIETNFRLGESIVNMVDVGGQRSQRRKWIYCFDDVKAVLYVV 228
R R R N G + S + + V +YV
Sbjct: 84 RDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVA 133
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 28.6 bits (65), Expect = 2.4
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 33 KHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTVMD 77
K++++G G GKS L Q F + + + PT+ D
Sbjct: 7 SETHKLVVVGGGGVGKSALTIQ--------FIQSYFVSDYDPTIED 44
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 28.3 bits (64), Expect = 2.6
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 17 RSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQ 54
L Q +K+ ++G SGKS LV +
Sbjct: 3 HHHHHSSGRENLYFQGPE-LKVGIVGNLSSGKSALVHR 39
>4ghj_A Probable transcriptional regulator; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE; 1.75A {Vibrio vulnificus}
Length = 101
Score = 27.6 bits (61), Expect = 2.6
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 10 EEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELE 69
+ +K R +++ LTQ + E I + E GK L + I+ T E+++
Sbjct: 39 DRLKQAR----LNRDLTQSEVAEIAGIARKTVLNAEKGKVQLDIMIAILMALDLT-EQID 93
Query: 70 SFKP 73
F P
Sbjct: 94 LFIP 97
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 28.2 bits (63), Expect = 3.1
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 17 RSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVM 76
S +D L Q K++++G G GK+ L+ D F + PTV
Sbjct: 7 HSSGVDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFS---KDEFPEVYV----PTVF 59
Query: 77 DN 78
+N
Sbjct: 60 EN 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 28.3 bits (64), Expect = 3.2
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 34 HVIKILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTVMD 77
+ K++++G+G GKS L Q F +E +E ++PT D
Sbjct: 17 ALHKVIMVGSGGVGKSALTLQ--------FMYDEFVEDYEPTKAD 53
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 28.8 bits (64), Expect = 3.4
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 19 DEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQ 54
D + K+L ++ + + + G SGKS + Q
Sbjct: 138 DRVIKKLDEMCDLDSFFLFLH--GRAGSGKSVIASQ 171
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 28.1 bits (62), Expect = 3.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 36 IKILLLGAGESGKSTLVK---QMKIIHNDGFTREEL 68
+KI++ G GK+TLVK + GF EE+
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEV 36
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A
{Rhodothermus marinus}
Length = 261
Score = 28.2 bits (63), Expect = 3.9
Identities = 8/73 (10%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 224 VLYVVALSGYDMTLLEDSSVNRLDESLNLFEQVVNN----RYFREASFILFLNKFDLFRE 279
Y A+ Y ++ + +++ F+ ++ +A+ + +
Sbjct: 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR-AKLAR 149
Query: 280 KILYSGRHLRYYL 292
K + R Y
Sbjct: 150 KQYEAA---RLYE 159
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 28.0 bits (63), Expect = 4.0
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 34 HVIKILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTVMD 77
+ K++++G+G GKS L Q F +E +E ++PT D
Sbjct: 13 ALHKVIMVGSGGVGKSALTLQ--------FMYDEFVEDYEPTKAD 49
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 27.5 bits (62), Expect = 4.3
Identities = 12/47 (25%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
Query: 29 SLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTV 75
S ++K+++K+++LG GK++L+ + ND ++ + +K T+
Sbjct: 2 SSRKKNILKVIILGDSGVGKTSLMHRYV---NDKYS----QQYKATI 41
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 28.1 bits (63), Expect = 4.4
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 33 KHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTV 75
+ KI L+G G GK+T + + +++ TV
Sbjct: 9 ELTYKICLIGDGGVGKTTYINR--------VLDGRFEKNYNATV 44
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 27.9 bits (63), Expect = 4.5
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 37 KILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTVMD 77
K+++LG GK++L Q F E E + PTV +
Sbjct: 26 KVVILGYRCVGKTSLAHQ--------FVEGEFSEGYDPTVEN 59
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 28.0 bits (62), Expect = 5.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 14 AQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLV 52
A ++ + L L ++ + + IL++G G GKS+ V
Sbjct: 18 APATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTV 56
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 27.4 bits (62), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
Query: 37 KILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTVMD 77
K++++G+G GKS L Q F +E +E ++PT D
Sbjct: 6 KVIMVGSGGVGKSALTLQ--------FMYDEFVEDYEPTKAD 39
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 27.5 bits (62), Expect = 5.0
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 35 VIKILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTVMD 77
+ +++LLG GK++L F ++ + + D
Sbjct: 4 LYRVVLLGDPGVGKTSLASL--------FAGKQERDLHEQLGED 39
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 27.5 bits (62), Expect = 5.1
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 37 KILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTVMD 77
++ + GAG GKS+LV + F + ES+ PTV D
Sbjct: 5 RVAVFGAGGVGKSSLVLR--------FVKGTFRESYIPTVED 38
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 27.3 bits (61), Expect = 5.7
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 29 SLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDN 78
S+ IK + +G G GK+ L+ ++ F + + PTV DN
Sbjct: 2 SMSASRFIKCVTVGDGAVGKTCLLISYT---SNTFPTD----YVPTVFDN 44
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 27.4 bits (61), Expect = 5.9
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTVMDN 78
+K +L+G G GK++LV +T + PT DN
Sbjct: 21 VKCVLVGDGAVGKTSLVVS--------YTTNGYPTEYIPTAFDN 56
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 27.4 bits (61), Expect = 6.2
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 25 LTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDN 78
+ L Q + IK +++G G GK+ L+ + F E + PTV DN
Sbjct: 21 MENLYFQGQA-IKCVVVGDGAVGKTCLLISYT---TNAFPGEYI----PTVFDN 66
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 27.2 bits (61), Expect = 6.2
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 28 LSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTV 75
L Q + + +LG +GKS L + F + + + P +
Sbjct: 14 LYFQGPLEVNLAILGRRGAGKSALTVK--------FLTKRFISEYDPNL 54
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 27.4 bits (61), Expect = 6.6
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 15 QRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPT 74
S + + + + + KI+++G + GK+ L+ D F + PT
Sbjct: 8 HHHSSGLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFA---KDCFPENYV----PT 60
Query: 75 VMDN 78
V +N
Sbjct: 61 VFEN 64
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 27.1 bits (61), Expect = 7.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 37 KILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTVMD 77
K+++LG+G GKS L Q F +E + PT+ D
Sbjct: 5 KVVVLGSGGVGKSALTVQ--------FVTGTFIEKYDPTIED 38
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 27.1 bits (61), Expect = 7.2
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Query: 37 KILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTVMD 77
K++++G G GKS L Q F ++ ++ + PT+ D
Sbjct: 20 KLVVVGDGGVGKSALTIQ--------FFQKIFVDDYDPTIED 53
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 27.3 bits (60), Expect = 7.2
Identities = 4/49 (8%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 38 ILLLGAGESGKSTLVKQM-KIIHNDGFTREELESFKPTVMDNLLSSMKY 85
++ G + + + + ++ + ++ + + MD S +
Sbjct: 122 TAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC 170
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 26.7 bits (60), Expect = 7.7
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 9/42 (21%)
Query: 35 VIKILLLGAGESGKSTLVKQMKIIHNDGFTREE-LESFKPTV 75
V K++L+G GKSTL F + + +
Sbjct: 2 VFKVMLVGESGVGKSTLAGT--------FGGLQGDHAHEMEN 35
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 26.9 bits (60), Expect = 8.4
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 36 IKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTV 75
+K++++G SGK+TL++Q+ + +L TV
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLM---KTKKS--DLGMQSATV 37
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 27.4 bits (61), Expect = 8.8
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 6 SLDSEEIKAQRRSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGF-- 63
+ ++IK Q +D + K V+ +++ G +SGKST++ + I+ G
Sbjct: 148 QPEKKKIKKQNPTDLVSVPEIFEQSNPKPVVHLVVTGHVDSGKSTMLGR--IMFELGEIN 205
Query: 64 --TREELE---------SFKPT-VMDNL 79
+ ++L SF ++D
Sbjct: 206 SRSMQKLHNEAANSGKGSFSYAWLLDTT 233
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 27.5 bits (61), Expect = 8.8
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 17 RSDEIDKQLTQLSLQEKHVIKILLLGAGESGKSTLV 52
R + +L + + G GKS L
Sbjct: 129 RKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLA 164
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 26.6 bits (59), Expect = 9.4
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 29 SLQEKHVIKILLLGAGESGKSTLVKQMKIIHNDGFTREELESFKPTVMDN 78
S K++++G G GK+ L+ D F + PTV +N
Sbjct: 19 SHMAAIRKKLVIVGDGACGKTCLLIVFS---KDQFPEVYV----PTVFEN 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.391
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,331,098
Number of extensions: 315621
Number of successful extensions: 1044
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1010
Number of HSP's successfully gapped: 121
Length of query: 359
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 264
Effective length of database: 4,049,298
Effective search space: 1069014672
Effective search space used: 1069014672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.4 bits)