BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14892
         (135 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OU5|A Chain A, Crystal Structure Of Human Cca-Adding Enzyme
 pdb|1OU5|B Chain B, Crystal Structure Of Human Cca-Adding Enzyme
          Length = 448

 Score = 29.6 bits (65), Expect = 0.54,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 10  LSNKLSHLIQLHYDLASTTVTGIPMKEEQNANSSANYDVEIFHPSEVH--AALLKGSQEF 67
           + N ++HLI L YDL      G+P           + +V+ F P  V   A+L K   + 
Sbjct: 261 VGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDV 320

Query: 68  PYRAAELHCVKAGPELSNKLSHLIQMHYDLASTTVTGIPMKEEQN 112
                 L   K   E  N    +++   DL   T +  P+K  Q+
Sbjct: 321 TKLDLRLKIAK---EEKNLGLFIVKNRKDLIKATDSSDPLKPYQD 362



 Score = 26.6 bits (57), Expect = 4.4,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 83  LSNKLSHLIQMHYDLASTTVTGIPMKEEQNANSSANYDVEIFHPSEV 129
           + N ++HLI + YDL      G+P           + +V+ F P  V
Sbjct: 261 VGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPV 307


>pdb|3GQC|A Chain A, Structure Of Human Rev1-Dna-Dntp Ternary Complex
 pdb|3GQC|B Chain B, Structure Of Human Rev1-Dna-Dntp Ternary Complex
 pdb|3GQC|C Chain C, Structure Of Human Rev1-Dna-Dntp Ternary Complex
 pdb|3GQC|D Chain D, Structure Of Human Rev1-Dna-Dntp Ternary Complex
          Length = 504

 Score = 26.6 bits (57), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 35  KEEQNANSSANYDVEIFHPSEVHAALLKGSQEFPYR 70
           KE ++ ++  NY +    P E  A LL  S+E   R
Sbjct: 378 KERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRR 413


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.127    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,806,908
Number of Sequences: 62578
Number of extensions: 130722
Number of successful extensions: 229
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 8
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)