Query psy14892
Match_columns 135
No_of_seqs 70 out of 72
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 23:29:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10221 DUF2151: Cell cycle a 100.0 1E-32 2.2E-37 252.2 4.3 89 45-134 191-290 (695)
2 KOG3711|consensus 99.9 1.1E-28 2.4E-33 222.4 5.1 110 10-135 175-295 (719)
3 PF10221 DUF2151: Cell cycle a 99.9 6.4E-26 1.4E-30 207.7 3.7 63 1-64 231-293 (695)
4 KOG3711|consensus 99.9 1.7E-23 3.8E-28 188.9 4.2 63 1-64 235-297 (719)
5 PF03479 DUF296: Domain of unk 46.5 43 0.00092 24.3 4.3 41 71-112 2-42 (120)
6 KOG1770|consensus 32.4 19 0.00042 27.6 0.6 11 98-108 42-52 (112)
7 cd07881 RHD-n_NFAT N-terminal 20.3 38 0.00081 27.7 0.2 29 95-123 94-131 (175)
8 COG5580 Activator of HSP90 ATP 18.4 60 0.0013 28.1 1.1 22 97-120 230-255 (272)
9 PF11123 DNA_Packaging_2: DNA 17.2 97 0.0021 22.6 1.8 22 81-102 31-53 (82)
10 COG1926 Predicted phosphoribos 15.9 69 0.0015 27.1 0.8 26 78-107 9-34 (220)
No 1
>PF10221 DUF2151: Cell cycle and development regulator; InterPro: IPR019355 This entry represents the cell cycle regulator Mat89b, which plays an evolutionarily conserved role as a crucial regulator of both cell cycle and development []. Mat89Bb is a PNG kinase substrate that is essential for S-M cycles of early Drosophila embryogenesis, Xenopus embryonic cell cycles and morphogenesis, and cell division in cultured mammalian cells.
Probab=99.97 E-value=1e-32 Score=252.18 Aligned_cols=89 Identities=53% Similarity=0.699 Sum_probs=77.5
Q ss_pred ccceeeccchhh--hHhhhcC---------cccCCcceEEEEEeecchhHHHHHHHHHHhhhcccceeeeCccccccccc
Q psy14892 45 NYDVEIFHPSEV--HAALLKG---------SQEFPYRAAELHCVKAGPELSNKLSHLIQMHYDLASTTVTGIPMKEEQNA 113 (135)
Q Consensus 45 nYdVei~H~~~a--H~~~lKE---------dp~s~~L~~~V~s~~Ag~~l~~~l~~L~~~h~dLaSTtVtgIPMKEeq~a 113 (135)
+--++|.||+.+ +....++ ..++|+|+||||+++||. |+++|++|++.|||||||||||||||||||+
T Consensus 191 ~~~~~I~~c~LvIini~p~~~~~~vt~~~l~~~s~~L~~eV~s~~A~~-l~~~l~~L~~~h~dLaSttVtgIPMKEeq~~ 269 (695)
T PF10221_consen 191 DKLFPIDHCELVIINIYPVGEESNVTTHPLKEISPLLSCEVHSVKAGR-LANKLHDLVQQHFDLASTTVTGIPMKEEQNA 269 (695)
T ss_pred cCccccceEEEEEEEEecCCcccccccCCccccCCCceEEEEEEEhhH-HHHHHHHHHHHhhhhhhheecCCcchhhhcC
Confidence 445799999933 3333344 258999999999999965 9999999999999999999999999999999
Q ss_pred CccccceeeeecchhHHHhhh
Q psy14892 114 NSSANYDVEIFHPSEVHAALL 134 (135)
Q Consensus 114 ~~SanYDVellH~~~aH~~~~ 134 (135)
|+||||||||||++.||+.+.
T Consensus 270 ~sSanYDVellH~~~~h~~~~ 290 (695)
T PF10221_consen 270 SSSANYDVELLHPRDAHSILK 290 (695)
T ss_pred CCccccceeeecchhhhhhhc
Confidence 999999999999999999654
No 2
>KOG3711|consensus
Probab=99.95 E-value=1.1e-28 Score=222.37 Aligned_cols=110 Identities=43% Similarity=0.596 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHhhcccceeeeCcccccccccCcccccceeeccchhh--hHhhhcCc---------ccCCcceEEEEEee
Q psy14892 10 LSNKLSHLIQLHYDLASTTVTGIPMKEEQNANSSANYDVEIFHPSEV--HAALLKGS---------QEFPYRAAELHCVK 78 (135)
Q Consensus 10 l~~~~~~l~~~h~~L~sttvt~IPMKEeqna~~SanYdVei~H~~~a--H~~~lKEd---------p~s~~L~~~V~s~~ 78 (135)
|-+-+..++++|-.||-. | .---+.|.||+.+ -+...++. ..+|+|++|||+++
T Consensus 175 Led~~~e~vV~~NklAa~-----P----------sK~~~~I~~c~LvIvN~yp~G~EslV~~rSL~~~sPLL~~evhsv~ 239 (719)
T KOG3711|consen 175 LEDCVQETIVEHNKLAAN-----P----------SKHLMQIQKCELVIINTYPVGEESLVSDRSLKELSPLLTSEVHSVR 239 (719)
T ss_pred HHHHHHHHHHhhccccCC-----c----------ccccccceeEEEEEEEeeccCchhcccchhhhhcCcceeEEEEEec
Confidence 555666667666655521 2 1124778888733 33334442 57899999999999
Q ss_pred cchhHHHHHHHHHHhhhcccceeeeCcccccccccCccccceeeeecchhHHHhhhC
Q psy14892 79 AGPELSNKLSHLIQMHYDLASTTVTGIPMKEEQNANSSANYDVEIFHPSEVHAALLK 135 (135)
Q Consensus 79 Ag~~l~~~l~~L~~~h~dLaSTtVtgIPMKEeq~a~~SanYDVellH~~~aH~~~~~ 135 (135)
| .+|+.||+.|+++||||+|||||+|||||||++|+|+||||||||+++||.++++
T Consensus 240 A-~D~~~kl~~L~~~hfDLaSTTVTnIPMKEeq~an~SaNYDVEllHS~~aH~~~~~ 295 (719)
T KOG3711|consen 240 A-GDLATKLNILVQQHFDLASTTVTNIPMKEEQHANTSANYDVELLHSKDAHVDFLK 295 (719)
T ss_pred c-hhHHHHHHHHHHHhhhcccceeecccchhhhcCCcccccceeeeeccchhHHHhc
Confidence 9 8999999999999999999999999999999999999999999999999998864
No 3
>PF10221 DUF2151: Cell cycle and development regulator; InterPro: IPR019355 This entry represents the cell cycle regulator Mat89b, which plays an evolutionarily conserved role as a crucial regulator of both cell cycle and development []. Mat89Bb is a PNG kinase substrate that is essential for S-M cycles of early Drosophila embryogenesis, Xenopus embryonic cell cycles and morphogenesis, and cell division in cultured mammalian cells.
Probab=99.92 E-value=6.4e-26 Score=207.72 Aligned_cols=63 Identities=67% Similarity=0.973 Sum_probs=60.3
Q ss_pred CccccCCchhHHHHHHHHHHhhcccceeeeCcccccccccCcccccceeeccchhhhHhhhcCc
Q psy14892 1 LHCVKAGPELSNKLSHLIQLHYDLASTTVTGIPMKEEQNANSSANYDVEIFHPSEVHAALLKGS 64 (135)
Q Consensus 1 ~h~~~ag~~l~~~~~~l~~~h~~L~sttvt~IPMKEeqna~~SanYdVei~H~~~aH~~~lKEd 64 (135)
||+++||+ |+++|++|++.|||||||||||||||||||+|+||||||||||++.||+.+++..
T Consensus 231 V~s~~A~~-l~~~l~~L~~~h~dLaSttVtgIPMKEeq~~~sSanYDVellH~~~~h~~~~~~~ 293 (695)
T PF10221_consen 231 VHSVKAGR-LANKLHDLVQQHFDLASTTVTGIPMKEEQNASSSANYDVELLHPRDAHSILKGNG 293 (695)
T ss_pred EEEEEhhH-HHHHHHHHHHHhhhhhhheecCCcchhhhcCCCccccceeeecchhhhhhhcccc
Confidence 79999987 9999999999999999999999999999999999999999999999999887764
No 4
>KOG3711|consensus
Probab=99.88 E-value=1.7e-23 Score=188.93 Aligned_cols=63 Identities=59% Similarity=0.892 Sum_probs=60.0
Q ss_pred CccccCCchhHHHHHHHHHHhhcccceeeeCcccccccccCcccccceeeccchhhhHhhhcCc
Q psy14892 1 LHCVKAGPELSNKLSHLIQLHYDLASTTVTGIPMKEEQNANSSANYDVEIFHPSEVHAALLKGS 64 (135)
Q Consensus 1 ~h~~~ag~~l~~~~~~l~~~h~~L~sttvt~IPMKEeqna~~SanYdVei~H~~~aH~~~lKEd 64 (135)
||+++| ++|+.||+.|+++||||+|||||+||||||||+|+|+||||||||+..||.++.+-.
T Consensus 235 vhsv~A-~D~~~kl~~L~~~hfDLaSTTVTnIPMKEeq~an~SaNYDVEllHS~~aH~~~~~~g 297 (719)
T KOG3711|consen 235 VHSVRA-GDLATKLNILVQQHFDLASTTVTNIPMKEEQHANTSANYDVELLHSKDAHVDFLKSG 297 (719)
T ss_pred EEEecc-hhHHHHHHHHHHHhhhcccceeecccchhhhcCCcccccceeeeeccchhHHHhccC
Confidence 699999 789999999999999999999999999999999999999999999999999886653
No 5
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=46.46 E-value=43 Score=24.30 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=33.2
Q ss_pred eEEEEEeecchhHHHHHHHHHHhhhcccceeeeCcccccccc
Q psy14892 71 AAELHCVKAGPELSNKLSHLIQMHYDLASTTVTGIPMKEEQN 112 (135)
Q Consensus 71 ~~~V~s~~Ag~~l~~~l~~L~~~h~dLaSTtVtgIPMKEeq~ 112 (135)
+..|..+++|.+|..+|..++..+ +..+..|++|=+=.+..
T Consensus 2 r~~~~rl~~Gedl~~~l~~~~~~~-~i~~~~is~iGsl~~~~ 42 (120)
T PF03479_consen 2 RVFVIRLDPGEDLLESLEAFAREH-GIRSGVISGIGSLSNVT 42 (120)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHH-T-SSEEEEEEEEEEEEE
T ss_pred cEEEEEECCCCHHHHHHHHHHHHC-CCcEEEEEEEeEEeEEE
Confidence 467889999999999999998877 89999999987655443
No 6
>KOG1770|consensus
Probab=32.37 E-value=19 Score=27.56 Aligned_cols=11 Identities=64% Similarity=0.927 Sum_probs=9.6
Q ss_pred cceeeeCcccc
Q psy14892 98 ASTTVTGIPMK 108 (135)
Q Consensus 98 aSTtVtgIPMK 108 (135)
.-|||.||||-
T Consensus 42 tlTtVQgi~~E 52 (112)
T KOG1770|consen 42 TLTTVQGIPME 52 (112)
T ss_pred EEEEecCChhh
Confidence 56999999995
No 7
>cd07881 RHD-n_NFAT N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes that are mainly involved in cell-cell interaction. Upon de-phosphorylation of the nuclear localization signal, NFAT enters the nucleus and acts as a transcription factor; its export from the nucleus is triggered by phosphorylation via export kinases. NFATs play important roles in mediating the immune response, and are found in T cells, B Cells, NK cells, mast cells, and monocytes. NFATs are also found in various non-hematopoietic cell types, where they play roles in development.
Probab=20.30 E-value=38 Score=27.74 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=0.0
Q ss_pred hcccceeeeCcccccccccCccc---------cceeee
Q psy14892 95 YDLASTTVTGIPMKEEQNANSSA---------NYDVEI 123 (135)
Q Consensus 95 ~dLaSTtVtgIPMKEeq~a~~Sa---------nYDVel 123 (135)
+++..|+|--|||+-|.|+..+. |-|||+
T Consensus 94 ~~i~gT~vlEv~l~P~~nMt~~iDC~GIlKLRN~DiEl 131 (175)
T cd07881 94 IIISNTKVLEIPLLPENNMRASIDCAGILKLRNSDIEL 131 (175)
T ss_pred EecCCCeEEEeeccCCCCeEEEEeehhhhhhhccchhh
No 8
>COG5580 Activator of HSP90 ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=18.42 E-value=60 Score=28.15 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=15.6
Q ss_pred ccceee----eCcccccccccCccccce
Q psy14892 97 LASTTV----TGIPMKEEQNANSSANYD 120 (135)
Q Consensus 97 LaSTtV----tgIPMKEeq~a~~SanYD 120 (135)
|++|+. +|||.+||-. -++|+.
T Consensus 230 ~s~tkl~vk~~giPigEE~~--vr~n~q 255 (272)
T COG5580 230 LSSTKLTVKQRGIPIGEEGS--VRMNWQ 255 (272)
T ss_pred cccceEEEEEcCCccCccce--eeeehh
Confidence 466765 5999999965 555543
No 9
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=17.22 E-value=97 Score=22.65 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHhh-hcccceee
Q psy14892 81 PELSNKLSHLIQMH-YDLASTTV 102 (135)
Q Consensus 81 ~~l~~~l~~L~~~h-~dLaSTtV 102 (135)
++|||+|..++..| |.|++..+
T Consensus 31 PQLYnAI~k~L~RHkF~iskl~p 53 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKFQISKLQP 53 (82)
T ss_pred hHHHHHHHHHHHHccchhhhcCc
Confidence 78999999999998 88877653
No 10
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=15.92 E-value=69 Score=27.06 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=19.0
Q ss_pred ecchhHHHHHHHHHHhhhcccceeeeCccc
Q psy14892 78 KAGPELSNKLSHLIQMHYDLASTTVTGIPM 107 (135)
Q Consensus 78 ~Ag~~l~~~l~~L~~~h~dLaSTtVtgIPM 107 (135)
+||+.|+++|..+- ++...+|+|||=
T Consensus 9 dAGr~La~~l~~~~----~~~~~iVlaLpR 34 (220)
T COG1926 9 DAGRKLAQELAALR----DLKDVIVLALPR 34 (220)
T ss_pred HHHHHHHHHHHhhc----cCCCcEEEEecC
Confidence 56777777776643 388899998874
Done!