Query psy14892
Match_columns 135
No_of_seqs 70 out of 72
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 23:29:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rjb_A Uncharacterized protein 9.4 99 0.0034 27.5 1.1 21 29-51 241-261 (455)
2 2fp7_A Serine protease subunit 8.2 1.4E+02 0.0048 19.0 1.2 20 105-124 17-37 (54)
3 2znl_B RNA-directed RNA polyme 7.6 1.1E+02 0.0038 21.3 0.6 13 27-39 58-70 (81)
4 2ijo_A Polyprotein; WEST NIle 7.3 1.6E+02 0.0055 19.0 1.2 20 106-125 14-34 (58)
5 2oka_A Hypothetical protein; P 7.2 3.6E+02 0.012 18.9 3.1 38 83-129 21-64 (104)
6 1c9k_A COBU, adenosylcobinamid 7.1 2.5E+02 0.0086 20.9 2.4 27 82-108 152-178 (180)
7 2k2b_A Degenerin MEC-4; membra 6.6 1.6E+02 0.0054 21.2 1.0 21 92-112 81-103 (111)
8 3u1j_A Serine protease subunit 6.6 1.7E+02 0.0059 18.3 1.0 19 108-126 18-37 (51)
9 2pg1_I Cytoplasmic dynein 1 in 6.2 1.6E+02 0.0055 17.2 0.7 14 96-109 8-21 (33)
10 2hx0_A Putative DNA-binding pr 6.1 6.5E+02 0.022 17.9 4.1 39 66-105 14-53 (154)
No 1
>2rjb_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Shigella flexneri}
Probab=9.38 E-value=99 Score=27.47 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=14.7
Q ss_pred eeCcccccccccCcccccceeec
Q psy14892 29 VTGIPMKEEQNANSSANYDVEIF 51 (135)
Q Consensus 29 vt~IPMKEeqna~~SanYdVei~ 51 (135)
-.|||||+.+. ++.....+|+
T Consensus 241 ~~Gi~~K~~IE--gpp~r~~PIL 261 (455)
T 2rjb_A 241 ECGIEPKILIE--GPPRREVPIL 261 (455)
T ss_dssp GGTCCCCSCCB--SSCCCSSCBS
T ss_pred HcCCCccccee--CCCCCCCCee
Confidence 36999999998 5555555554
No 2
>2fp7_A Serine protease subunit NS2B; flavivirus, NS3 protease, NS2B cofactor; HET: OAR; 1.68A {West nile virus} PDB: 3e90_A*
Probab=8.23 E-value=1.4e+02 Score=19.00 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=12.6
Q ss_pred cccccccc-cCccccceeeee
Q psy14892 105 IPMKEEQN-ANSSANYDVEIF 124 (135)
Q Consensus 105 IPMKEeq~-a~~SanYDVell 124 (135)
|-=++|+. .++|.+|||.+-
T Consensus 17 v~W~~eAe~sG~s~rldV~~d 37 (54)
T 2fp7_A 17 ITWESDAEITGSSERVDVRLD 37 (54)
T ss_dssp CCCCTTCEECCCCCEEEEEEC
T ss_pred cccCcchhhcCCcceEEEEEC
Confidence 33344544 455889999964
No 3
>2znl_B RNA-directed RNA polymerase catalytic subunit; PA, PB1, subunit interaction, phosphoprotein, nucleotide-binding, nucleotidyltransferase; 2.30A {Influenza a virus}
Probab=7.62 E-value=1.1e+02 Score=21.28 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=11.1
Q ss_pred eeeeCcccccccc
Q psy14892 27 TTVTGIPMKEEQN 39 (135)
Q Consensus 27 ttvt~IPMKEeqn 39 (135)
.++||+||-++.|
T Consensus 58 ~~~tg~p~~~~in 70 (81)
T 2znl_B 58 NTETGAPQLNPID 70 (81)
T ss_pred ccccCCCccCcCC
Confidence 3689999999887
No 4
>2ijo_A Polyprotein; WEST NIle virus, protease, aprotinin, BPTI, NS2B, NS3, flavivirus, serine protease; 2.30A {West nile virus}
Probab=7.33 E-value=1.6e+02 Score=18.98 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=12.5
Q ss_pred ccccccc-cCccccceeeeec
Q psy14892 106 PMKEEQN-ANSSANYDVEIFH 125 (135)
Q Consensus 106 PMKEeq~-a~~SanYDVellH 125 (135)
-=++|+. .++|.+|||.+-.
T Consensus 14 ~W~~eAe~sG~s~rldV~~d~ 34 (58)
T 2ijo_A 14 SWESDAEITGSSERVDVRLDD 34 (58)
T ss_dssp CCCTTCEECCCCCEEEEEECT
T ss_pred ccCcchhhcCCcceEEEEECC
Confidence 3344444 4458899999643
No 5
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=7.20 E-value=3.6e+02 Score=18.87 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhh--cccceeeeCcccccccccCcccccee----eeecchhH
Q psy14892 83 LSNKLSHLIQMHY--DLASTTVTGIPMKEEQNANSSANYDV----EIFHPSEV 129 (135)
Q Consensus 83 l~~~l~~L~~~h~--dLaSTtVtgIPMKEeq~a~~SanYDV----ellH~~~a 129 (135)
=+.-+.+-++..| +|+ .|+.+|- ++-.|.| +++|++..
T Consensus 21 Ra~~laqeLl~tF~~~l~--~v~l~P~-------~~G~FEV~vng~lV~SKk~ 64 (104)
T 2oka_A 21 RAAWLAQELLSTFADDLG--KVCLEPG-------TGGVFRITCDGVQVWERKA 64 (104)
T ss_dssp HHHHHHHHHHHHSTTTCS--EEEEEEE-------CTTCEEEEETTEEEEEHHH
T ss_pred HHHHHHHHHHHHcCcccc--eEEEEeC-------CCceEEEEECCEEEEEEec
Confidence 3556778888899 666 6888883 3444555 77777653
No 6
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=7.07 E-value=2.5e+02 Score=20.87 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHhhhcccceeeeCcccc
Q psy14892 82 ELSNKLSHLIQMHYDLASTTVTGIPMK 108 (135)
Q Consensus 82 ~l~~~l~~L~~~h~dLaSTtVtgIPMK 108 (135)
++.-.+++.+-..=|=.--.|.||||+
T Consensus 152 D~~G~lnq~lA~~ad~V~lvvaGipl~ 178 (180)
T 1c9k_A 152 DIAGRVNQRLAAAADEVWLVVSGIGVK 178 (180)
T ss_dssp HHHHHHHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCcEe
Confidence 466677777777778888899999986
No 7
>2k2b_A Degenerin MEC-4; membrane associated, minimal constraint, detergent solubilized, glycoprotein, ION transport, ionic channel; NMR {Caenorhabditis elegans}
Probab=6.63 E-value=1.6e+02 Score=21.25 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=14.8
Q ss_pred Hhhhc--ccceeeeCcccccccc
Q psy14892 92 QMHYD--LASTTVTGIPMKEEQN 112 (135)
Q Consensus 92 ~~h~d--LaSTtVtgIPMKEeq~ 112 (135)
..||| |--|+--||||--|+.
T Consensus 81 ~~~F~~~~~K~Sahgipmigeap 103 (111)
T 2k2b_A 81 AWHFKEFCYKTSAHGIPMIGEAP 103 (111)
T ss_dssp HHHHHHHTSCSSCSSCCSSSCCC
T ss_pred HHHHHHHHHhccccCCcccCcCc
Confidence 34555 3457789999988764
No 8
>3u1j_A Serine protease subunit NS2B; serine protease, ER MEM hydrolase-hydrolase inhibitor complex; 1.80A {Dengue virus 3} PDB: 3u1i_A
Probab=6.62 E-value=1.7e+02 Score=18.32 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=12.6
Q ss_pred cccc-ccCccccceeeeecc
Q psy14892 108 KEEQ-NANSSANYDVEIFHP 126 (135)
Q Consensus 108 KEeq-~a~~SanYDVellH~ 126 (135)
++|+ +.++|.+|||.+-..
T Consensus 18 ~~eAe~sG~s~rldV~~d~~ 37 (51)
T 3u1j_A 18 EEEAEQTGVSHNLMITVDDD 37 (51)
T ss_pred CcchhhcCCcceEEEEECCC
Confidence 4444 445599999987544
No 9
>2pg1_I Cytoplasmic dynein 1 intermediate chain 2; dynein light chain, LC8, PIN, tctex1, structural protein; 2.80A {Rattus norvegicus}
Probab=6.15 E-value=1.6e+02 Score=17.21 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.9
Q ss_pred cccceeeeCccccc
Q psy14892 96 DLASTTVTGIPMKE 109 (135)
Q Consensus 96 dLaSTtVtgIPMKE 109 (135)
.+++++.++||=||
T Consensus 8 ~~s~v~~~~ipPkE 21 (33)
T 2pg1_I 8 GMAKITQVDFPPRE 21 (33)
T ss_dssp EECCCEEEEECCCC
T ss_pred eEEEEEEeccCCcc
Confidence 35788899999998
No 10
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=6.07 E-value=6.5e+02 Score=17.93 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=29.0
Q ss_pred cCCcceEEEEEeecchhHHHHHHHHHHhhhcccceee-eCc
Q psy14892 66 EFPYRAAELHCVKAGPELSNKLSHLIQMHYDLASTTV-TGI 105 (135)
Q Consensus 66 ~s~~L~~~V~s~~Ag~~l~~~l~~L~~~h~dLaSTtV-tgI 105 (135)
.....+..+..+++|.+|..+|..++.++ ++.+-.| ++|
T Consensus 14 ~~~~~r~~vlrL~~Gedl~~~i~~~~~~~-gi~~a~v~s~i 53 (154)
T 2hx0_A 14 NASTARFYALRLLPGQEVFSQLHAFVQQN-QLRAAWIAGCT 53 (154)
T ss_dssp SCCCCEEEEEEECTTCBHHHHHHHHHHHH-TCSSEEEEEEE
T ss_pred CCCCccEEEEEECCCCcHHHHHHHHHHHh-CCCEEEEEEeE
Confidence 44557888999999999999999998654 3444444 555
Done!