Query psy14892
Match_columns 135
No_of_seqs 70 out of 72
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 23:29:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14892.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14892hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1udsa1 d.14.1.4 (A:2-150) Rib 28.5 2.9 0.00021 27.7 -1.5 36 69-110 110-146 (149)
2 d1e3ha3 d.14.1.4 (A:346-482) P 26.6 7 0.00051 25.5 0.2 35 68-108 102-137 (137)
3 d1r6la1 d.14.1.4 (A:1-151) Rib 17.4 6.5 0.00048 25.8 -1.6 36 69-110 112-148 (151)
4 d2fzfa1 a.25.1.1 (A:10-167) Hy 15.0 25 0.0018 22.0 1.0 11 31-41 1-11 (158)
5 d1iu8a_ c.56.4.1 (A:) Pyrrolid 8.5 61 0.0044 22.8 1.3 42 74-115 129-174 (206)
6 d1iofa_ c.56.4.1 (A:) Pyrrolid 8.4 61 0.0045 22.7 1.3 20 75-94 133-152 (208)
7 d2nrka1 d.218.1.14 (A:4-170) H 7.7 21 0.0015 24.7 -1.6 14 96-109 33-46 (167)
8 d1auga_ c.56.4.1 (A:) Pyrrolid 6.3 62 0.0045 22.7 0.4 38 76-113 136-177 (210)
9 d1c9ka_ c.37.1.11 (A:) Adenosy 5.8 1.5E+02 0.011 20.4 2.4 27 82-108 152-178 (180)
10 d2h6la1 d.290.1.3 (A:1-138) Hy 5.2 2.8E+02 0.02 17.5 3.3 37 71-108 10-46 (138)
No 1
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]}
Probab=28.45 E-value=2.9 Score=27.68 Aligned_cols=36 Identities=8% Similarity=0.059 Sum_probs=19.6
Q ss_pred cceEEEEEeecchhHHHH-HHHHHHhhhcccceeeeCcccccc
Q psy14892 69 YRAAELHCVKAGPELSNK-LSHLIQMHYDLASTTVTGIPMKEE 110 (135)
Q Consensus 69 ~L~~~V~s~~Ag~~l~~~-l~~L~~~h~dLaSTtVtgIPMKEe 110 (135)
.+.+.|+-......+.+. +.-... .-.-+||||||+
T Consensus 110 ~i~v~v~VL~~DG~l~da~~~A~~~------AL~dagipm~~~ 146 (149)
T d1udsa1 110 TIWVDCDVIQADGGTATAAITGAFV------AVADAIIKLHKE 146 (149)
T ss_dssp EEEEEEEEEECSSCHHHHHHHHHHH------HHHHHHHHHHHT
T ss_pred eEEEEEEEEccCCCHHHHHHHHHHH------HHHHhChHHHHC
Confidence 356666667763333333 322222 233479999984
No 2
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]}
Probab=26.65 E-value=7 Score=25.55 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=20.4
Q ss_pred CcceEEEEEeec-chhHHHHHHHHHHhhhcccceeeeCcccc
Q psy14892 68 PYRAAELHCVKA-GPELSNKLSHLIQMHYDLASTTVTGIPMK 108 (135)
Q Consensus 68 ~~L~~~V~s~~A-g~~l~~~l~~L~~~h~dLaSTtVtgIPMK 108 (135)
-.+.+.|.-+.. |..+...+.-..+.- .-+|||||
T Consensus 102 ~~I~v~v~vl~~DG~~~~aainAa~lAL------~dAGIpmk 137 (137)
T d1e3ha3 102 YAIRQVSEALGSNGSTSMGSVCASTMSL------LNAGVPLK 137 (137)
T ss_dssp EEEEEEEEEEECSSCHHHHHHHHHHHHH------HHHTCCCS
T ss_pred EEEEEEEEEecCCCCHHHHHHHHHHHHH------HHcCCccC
Confidence 345666666666 555555554443332 23799998
No 3
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.37 E-value=6.5 Score=25.83 Aligned_cols=36 Identities=6% Similarity=-0.075 Sum_probs=19.4
Q ss_pred cceEEEEEeecchhHHHHH-HHHHHhhhcccceeeeCcccccc
Q psy14892 69 YRAAELHCVKAGPELSNKL-SHLIQMHYDLASTTVTGIPMKEE 110 (135)
Q Consensus 69 ~L~~~V~s~~Ag~~l~~~l-~~L~~~h~dLaSTtVtgIPMKEe 110 (135)
.+.+.|+-...+..+.+.. .-.. +.-.-+||||||-
T Consensus 112 ~i~v~v~VL~~DG~~~da~~~Aa~------~AL~dagip~~~~ 148 (151)
T d1r6la1 112 TLYIDCDVIQADGGTRTASITGAT------VALIDALAVLKKR 148 (151)
T ss_dssp EEEEEEEEEECSSCHHHHHHHHHH------HHHHHHHHHHHHT
T ss_pred EEEEEEEEEeCCCCHHHHHHHHHH------HHHHHhcHHHHHc
Confidence 3455566666644344432 2222 2234589999984
No 4
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=15.04 E-value=25 Score=21.98 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=8.2
Q ss_pred CcccccccccC
Q psy14892 31 GIPMKEEQNAN 41 (135)
Q Consensus 31 ~IPMKEeqna~ 41 (135)
|||||.-++.+
T Consensus 1 ~~p~~~~~~~~ 11 (158)
T d2fzfa1 1 GLPIEKMADFS 11 (158)
T ss_dssp CBCGGGGTTSC
T ss_pred CCChhhcCCCc
Confidence 89999876643
No 5
>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.49 E-value=61 Score=22.79 Aligned_cols=42 Identities=17% Similarity=0.104 Sum_probs=26.7
Q ss_pred EEEeecchhHHHHHHHHHHhhh---ccc-ceeeeCcccccccccCc
Q psy14892 74 LHCVKAGPELSNKLSHLIQMHY---DLA-STTVTGIPMKEEQNANS 115 (135)
Q Consensus 74 V~s~~Ag~~l~~~l~~L~~~h~---dLa-STtVtgIPMKEeq~a~~ 115 (135)
..|-.||+-|||-+.-..+..- ... .+---=+|.-+||-+..
T Consensus 129 ~~S~daG~YlCN~~yY~sL~~~~~~~~~~~~~FIHvP~~~eq~~~~ 174 (206)
T d1iu8a_ 129 VLSYTAGTYLCNFAMYLTLHTSATKGYPKIAGFIHVPYTPDQVLEK 174 (206)
T ss_dssp EEESCCCSSHHHHHHHHHHHHHHHHCCSSEEEEEEECBCGGGCTTC
T ss_pred EEcCcHHhhhhhHHHHHHHHHHHhcCCCCeEEEEEcCCChHhccCC
Confidence 3578999999999988777442 111 12233478777776543
No 6
>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=8.43 E-value=61 Score=22.75 Aligned_cols=20 Identities=30% Similarity=0.154 Sum_probs=16.6
Q ss_pred EEeecchhHHHHHHHHHHhh
Q psy14892 75 HCVKAGPELSNKLSHLIQMH 94 (135)
Q Consensus 75 ~s~~Ag~~l~~~l~~L~~~h 94 (135)
.|-.||+-|||-+.-..+.+
T Consensus 133 iS~daG~YlCN~~yY~sL~~ 152 (208)
T d1iofa_ 133 ISNSAGLYLCNYVMYLSLHH 152 (208)
T ss_dssp EESCCCSSHHHHHHHHHHHH
T ss_pred ecCchhhhhhhHHHHHHHHH
Confidence 48899999999998877753
No 7
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB {Enterococcus faecalis [TaxId: 1351]}
Probab=7.73 E-value=21 Score=24.69 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=11.6
Q ss_pred cccceeeeCccccc
Q psy14892 96 DLASTTVTGIPMKE 109 (135)
Q Consensus 96 dLaSTtVtgIPMKE 109 (135)
...||.|.|+|=|-
T Consensus 33 HIGSTsVpGl~AKp 46 (167)
T d2nrka1 33 HIGSTSVPNLAAKP 46 (167)
T ss_dssp EESGGGSTTCCBCS
T ss_pred eeccCCCCCCccCC
Confidence 45899999999883
No 8
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=6.30 E-value=62 Score=22.74 Aligned_cols=38 Identities=21% Similarity=0.086 Sum_probs=24.7
Q ss_pred EeecchhHHHHHHHHHHhh---hcc-cceeeeCccccccccc
Q psy14892 76 CVKAGPELSNKLSHLIQMH---YDL-ASTTVTGIPMKEEQNA 113 (135)
Q Consensus 76 s~~Ag~~l~~~l~~L~~~h---~dL-aSTtVtgIPMKEeq~a 113 (135)
|-.||+-|||-+.-..+.. +.. ..+---=||+-+||-+
T Consensus 136 S~daG~YlCN~~yY~sL~~~~~~~~~~~~~FvHvP~~~~~~~ 177 (210)
T d1auga_ 136 SYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIPYIPEQTL 177 (210)
T ss_dssp BSCCCSSHHHHHHHHHHHHHHHHCTTCEEEEEEECCCGGGSS
T ss_pred cCCCCccchhhHHHHHHHHHHhhCCCCeEEEEECCCchhhcc
Confidence 7789999999988777643 221 1233445788776643
No 9
>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}
Probab=5.83 E-value=1.5e+02 Score=20.37 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhhhcccceeeeCcccc
Q psy14892 82 ELSNKLSHLIQMHYDLASTTVTGIPMK 108 (135)
Q Consensus 82 ~l~~~l~~L~~~h~dLaSTtVtgIPMK 108 (135)
++.-++.+.+-..=|=.--.|.||||+
T Consensus 152 d~lG~lnq~lA~~ad~V~~vv~Gip~~ 178 (180)
T d1c9ka_ 152 DIAGRVNQRLAAAADEVWLVVSGIGVK 178 (180)
T ss_dssp HHHHHHHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHCCEEEEEeCCccee
Confidence 455667777777777778889999986
No 10
>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=5.16 E-value=2.8e+02 Score=17.53 Aligned_cols=37 Identities=11% Similarity=0.243 Sum_probs=28.0
Q ss_pred eEEEEEeecchhHHHHHHHHHHhhhcccceeeeCcccc
Q psy14892 71 AAELHCVKAGPELSNKLSHLIQMHYDLASTTVTGIPMK 108 (135)
Q Consensus 71 ~~~V~s~~Ag~~l~~~l~~L~~~h~dLaSTtVtgIPMK 108 (135)
+..+..+++|.+|...|.+++.++ ...+-.|++|=+=
T Consensus 10 r~~~~rl~~Gedl~~~l~~~~~~~-~i~~a~is~iG~~ 46 (138)
T d2h6la1 10 KGFLLRLDYGKDLVRQIEEFLEEK-GIHAAHISAIGAV 46 (138)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHH-TCCSEEEEEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHc-CCcEEEEEEEeec
Confidence 456778899999999999987553 5556677777553
Done!