RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14892
(135 letters)
>gnl|CDD|220635 pfam10221, DUF2151, Cell cycle and development regulator. This is
a set of proteins conserved from worms to humans. The
proteins are a PAN GU kinase substrate, Mat89Bb,
essential for S-M cycles of early Drosophila
embryogenesis, Xenopus embryonic cell cycles and
morphogenesis, and cell division in cultured mammalian
cells.
Length = 692
Score = 101 bits (252), Expect = 7e-26
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 10/83 (12%)
Query: 52 HPSEVHAALLKGSQEFPYRAAELHCVKAGPELSNKLSHLIQMHYDLASTTVTGIPMKEEQ 111
+ + LLK +E+H VKA ++S KL L+ H+DLASTTVT IPMKEEQ
Sbjct: 219 RSLKEISPLLK---------SEVHSVKA-GDMSVKLHSLLVDHFDLASTTVTNIPMKEEQ 268
Query: 112 NANSSANYDVEIFHPSEVHAALL 134
ANSSANYDVE+FH + H+ L
Sbjct: 269 RANSSANYDVELFHSRKAHSILK 291
Score = 99 bits (249), Expect = 2e-25
Identities = 38/61 (62%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 1 LHCVKAGPELSNKLSHLIQLHYDLASTTVTGIPMKEEQNANSSANYDVEIFHPSEVHAAL 60
+H VKA ++S KL L+ H+DLASTTVT IPMKEEQ ANSSANYDVE+FH + H+ L
Sbjct: 232 VHSVKA-GDMSVKLHSLLVDHFDLASTTVTNIPMKEEQRANSSANYDVELFHSRKAHSIL 290
Query: 61 L 61
Sbjct: 291 K 291
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 28.2 bits (63), Expect = 1.3
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 27 TTVTGIPMKEEQNANSSANYDVEIFHPSEVHAALLKGSQEFPYRAAEL 74
T GI +KE NSS +F S+V AL KG PYR ++L
Sbjct: 237 TGNEGIRLKESAAINSS------LFVLSKVVDALNKGLPRIPYRESKL 278
>gnl|CDD|200594 cd10972, CE4_DAC_u3_5s, Putative catalytic NodB homology domain of
uncharacterized bacterial polysaccharide deacetylases
which consist of a 5-stranded beta/alpha barrel. This
family contains uncharacterized bacterial polysaccharide
deacetylases. Although their biological functions remain
unknown, all members of the family are predicted to
contain a conserved domain with a 5-stranded beta/alpha
barrel, which is similar to the catalytic NodB homology
domain of rhizobial NodB-like proteins, belonging to the
larger carbohydrate esterase 4 (CE4) superfamily.
Length = 216
Score = 26.5 bits (59), Expect = 4.6
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 21/93 (22%)
Query: 13 KLSHLIQLHYDLASTTVTGIPMKE-------EQNANSSA-------NYDVEIF------H 52
KL L++L Y++ + T T + + + E+ A + Y+VE
Sbjct: 73 KLRWLVELGYEIGNHTYTHVNLNKLDAEEIQEELARVNKMIEEAIPGYEVESLALPFGMK 132
Query: 53 PSEVHAALLKGSQE-FPYRAAELHCVKAGPELS 84
P E A +L G E Y+ + V A P S
Sbjct: 133 PKENRALVLSGEYEGVSYKHQAVLLVGAEPAPS 165
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10. Histone deacetylases 10
are class IIb Zn-dependent enzymes that catalyze
hydrolysis of N(6)-acetyl-lysine of a histone to yield a
deacetylated histone (EC 3.5.1.98). Histone
acetylation/deacetylation process is important for
mediation of transcriptional regulation of many genes.
HDACs usually act via association with DNA binding
proteins to target specific chromatin regions. HDAC10
has an N-terminal deacetylase domain and a C-terminal
pseudo-repeat that shares significant similarity with
its catalytic domain. It is located in the nucleus and
cytoplasm, and is involved in regulation of
melanogenesis. It transcriptionally down-regulates
thioredoxin-interacting protein (TXNIP), leading to
altered reactive oxygen species (ROS) signaling in human
gastric cancer cells. Known interaction partners of
HDAC10 are Pax3, KAP1, hsc70 and HDAC3 proteins.
Length = 337
Score = 26.4 bits (58), Expect = 5.5
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 90 LIQMHYDLASTTVTGIPMKEEQNANSSANYDVEIFHPSEVHAALL 134
L+ L+ T + M +E+ S YD FHP+ H A L
Sbjct: 45 LVHSPEYLSLVRETQV-MNKEELMAISGKYDAVYFHPNTFHCARL 88
Score = 26.0 bits (57), Expect = 7.4
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 17 LIQLHYDLASTTVTGIPMKEEQNANSSANYDVEIFHPSEVHAALL 61
L+ L+ T + M +E+ S YD FHP+ H A L
Sbjct: 45 LVHSPEYLSLVRETQV-MNKEELMAISGKYDAVYFHPNTFHCARL 88
>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 26.7 bits (59), Expect = 5.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 69 YRAAELHCVKAGPELSNKL 87
YRA C+K G +L +L
Sbjct: 36 YRACAWWCLKQGIDLDAEL 54
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 26.0 bits (58), Expect = 6.8
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 23/71 (32%)
Query: 24 LASTTVTGIPMKEEQNANSS--ANYDVEIFHPSEVHAALLKGSQEFPYRAAELHCVKAGP 81
L + TG +KE Q N S A DV I +AL PYR
Sbjct: 239 LKKSGATGDRLKEAQAINKSLSALGDV-I-------SALRSKDSHVPYR----------- 279
Query: 82 ELSNKLSHLIQ 92
++KL++L+Q
Sbjct: 280 --NSKLTYLLQ 288
>gnl|CDD|220519 pfam10009, DUF2252, Uncharacterized protein conserved in bacteria
(DUF2252). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 383
Score = 25.6 bits (57), Expect = 8.9
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 93 MHYDLASTTVTGIPM 107
DLA T TG +
Sbjct: 28 FAADLAGTPPTGPRV 42
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.127 0.362
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,377,064
Number of extensions: 525447
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 14
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.4 bits)