RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14892
         (135 letters)



>d1lsha2 f.7.1.1 (A:17-284) Lipovitellin-phosvitin complex;
          beta-sheet shell regions {Lamprey (Ichthyomyzon
          unicuspis) [TaxId: 30308]}
          Length = 268

 Score = 26.5 bits (58), Expect = 1.2
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 6/82 (7%)

Query: 21 HYDLASTTVTGIPMKEEQNANSSANYDVEIFHPSEVHAAL------LKGSQEFPYRAAEL 74
           Y   + +++G+P      A  S    +EI   +   A L      LK         +  
Sbjct: 9  RYSYDAFSISGLPEPGVNRAGLSGEMKIEIHGHTHNQATLKITQVNLKYFLGPWPSDSFY 68

Query: 75 HCVKAGPELSNKLSHLIQMHYD 96
                     +L   ++  Y 
Sbjct: 69 PLTGGYDHFIQQLEVPVRFDYS 90


>d1l1ya_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
           {Clostridium thermocellum [TaxId: 1515]}
          Length = 642

 Score = 24.0 bits (52), Expect = 7.2
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 6/39 (15%)

Query: 32  IPMKEEQ------NANSSANYDVEIFHPSEVHAALLKGS 64
           IP   EQ      N NS A Y  E   PS   + L   +
Sbjct: 94  IPDSTEQPGMSSYNPNSPATYADEYEDPSYYPSELKFDT 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.127    0.362 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 461,653
Number of extensions: 17979
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 3
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.7 bits)