BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14895
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKJ|B Chain B, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKI|A Chain A, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
pdb|1CKI|B Chain B, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
Length = 317
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 59/66 (89%)
Query: 1 MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNM 60
MSTPIE LCKGYP EF T+L + RSLRF++KPDYSY RQLFRNLFHR+GF+YDYVFDWNM
Sbjct: 233 MSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNM 292
Query: 61 LKFGGS 66
LKFG S
Sbjct: 293 LKFGAS 298
>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|B Chain B, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|C Chain C, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|D Chain D, Crystal Structure Of Apo Human Ck1d
pdb|3UYT|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|C Chain C, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|D Chain D, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UZP|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|3UZP|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|4HNF|A Chain A, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HNF|B Chain B, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HGT|A Chain A, Crystal Structure Of Ck1d With Compound 13
pdb|4HGT|B Chain B, Crystal Structure Of Ck1d With Compound 13
Length = 296
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 1 MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNM 60
MSTPIE LCKGYP EF T+L + RSLRF++KPDYSY RQLFRNLFHR+GF+YDYVFDWNM
Sbjct: 235 MSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNM 294
Query: 61 LK 62
LK
Sbjct: 295 LK 296
>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567
pdb|4HNI|B Chain B, Crystal Structure Of Ck1e In Complex With Pf4800567
pdb|4HOK|A Chain A, Crystal Structure Of Apo Ck1e
pdb|4HOK|C Chain C, Crystal Structure Of Apo Ck1e
pdb|4HOK|E Chain E, Crystal Structure Of Apo Ck1e
pdb|4HOK|G Chain G, Crystal Structure Of Apo Ck1e
pdb|4HOK|I Chain I, Crystal Structure Of Apo Ck1e
pdb|4HOK|K Chain K, Crystal Structure Of Apo Ck1e
pdb|4HOK|M Chain M, Crystal Structure Of Apo Ck1e
pdb|4HOK|O Chain O, Crystal Structure Of Apo Ck1e
pdb|4HOK|Q Chain Q, Crystal Structure Of Apo Ck1e
pdb|4HOK|S Chain S, Crystal Structure Of Apo Ck1e
pdb|4HOK|U Chain U, Crystal Structure Of Apo Ck1e
pdb|4HOK|W Chain W, Crystal Structure Of Apo Ck1e
Length = 296
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 1 MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNM 60
MSTPIE LCKGYP EF T+L + RSLRF++KPDYSY RQLFRNLFHR+GF+YDYVFDWNM
Sbjct: 235 MSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNM 294
Query: 61 LK 62
LK
Sbjct: 295 LK 296
>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant
Length = 483
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 54/67 (80%)
Query: 1 MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNM 60
++T IE LC+GYP EF ++ Y RSLRF++KPDYSY ++LFR+LF R+GF +DYVFDW +
Sbjct: 233 VATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFDWTI 292
Query: 61 LKFGGSR 67
LK+ S+
Sbjct: 293 LKYQQSQ 299
>pdb|2CMW|A Chain A, Structure Of Human Casein Kinase 1 Gamma-1 In Complex With
2-(2-Hydroxyethylamino)-6-(3-Chloroanilino)-9-
Isopropylpurine (Casp Target)
Length = 310
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%)
Query: 2 STPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDW 58
+TPIE LC+ +P E T+L Y R L F EKPDY Y R LF +LF +KG+T+DY +DW
Sbjct: 230 NTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFEKKGYTFDYAYDW 286
>pdb|2C47|A Chain A, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|B Chain B, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|C Chain C, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|D Chain D, Structure Of Casein Kinase 1 Gamma 2
Length = 313
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 40/57 (70%)
Query: 2 STPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDW 58
+TPIE LC+ +P E T+L Y R L F EKPDY Y R+LF +LF R GF +DY +DW
Sbjct: 233 ATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGFVFDYEYDW 289
>pdb|2IZR|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
pdb|2IZS|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
pdb|2IZT|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
pdb|2IZU|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
Length = 330
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 2 STPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDW 58
+TPIE LC+ +P E T+L Y R L F EKPDY Y R+LF +LF RKG+ +DY +DW
Sbjct: 238 ATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDW 293
>pdb|2CHL|A Chain A, Structure Of Casein Kinase 1 Gamma 3
Length = 351
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 2 STPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDW 58
+TPIE LC+ +P E T+L Y R L F EKPDY Y R+LF +LF RKG+ +DY +DW
Sbjct: 259 ATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDW 314
>pdb|4HGL|A Chain A, Crystal Structure Of Ck1g3 With Compound 1
pdb|4HGS|A Chain A, Crystal Structure Of Ck1gs With Compound 13
Length = 330
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 2 STPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDW 58
+TPIE LC+ +P E T+L Y R L F EKPDY Y R+LF +LF RKG+ +DY +DW
Sbjct: 238 ATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDW 293
>pdb|2CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Cki7
Length = 297
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 2 STPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNML 61
STP+ ELC G+P EF ++ Y+R+L F+ PDY Y + LF + R T D FDWN+L
Sbjct: 238 STPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENFDWNLL 297
>pdb|1EH4|A Chain A, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1EH4|B Chain B, Binary Complex Of Casein Kinase-1 From S. Pombe With An
Atp Competitive Inhibitor, Ic261
pdb|1CSN|A Chain A, Binary Complex Of Casein Kinase-1 With Mgatp
Length = 298
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 2 STPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNML 61
STP+ ELC G+P EF ++ Y+R+L F+ PDY Y + LF + R T D FDWN+L
Sbjct: 239 STPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENFDWNLL 298
>pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|A Chain A, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|B Chain B, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
Length = 331
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 9 CKGYPGEFPTFLLYSRSL-RFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNMLKFG--- 64
C+ +P + P L S++L +F E ++ Y R R +GF D++F + L G
Sbjct: 245 CQLHP-QAPVMLKVSKNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIFHYESLNDGYKM 303
Query: 65 -GSRGPAG-AQPVGRKIKS 81
G+ P A + + IKS
Sbjct: 304 IGNAVPVNLAYEIAKTIKS 322
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
Length = 324
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 9 CKGYPGEFPTFLLYSRSL-RFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNML----KF 63
C+ +P + P L S++L +F E ++ Y R R +GF D++F + L K
Sbjct: 245 CQLHP-QAPVMLKVSKNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIFHYESLNDGYKM 303
Query: 64 GGSRGPAG-AQPVGRKIKS 81
G+ P A + + IKS
Sbjct: 304 IGNAVPVNLAYEIAKTIKS 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,081,269
Number of Sequences: 62578
Number of extensions: 337469
Number of successful extensions: 810
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 23
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)