Query psy14895
Match_columns 276
No_of_seqs 191 out of 939
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 23:32:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1165|consensus 99.5 2E-14 4.4E-19 138.6 6.9 66 1-66 256-321 (449)
2 KOG1163|consensus 99.4 2E-13 4.4E-18 127.9 4.9 63 1-63 241-303 (341)
3 KOG1164|consensus 98.3 1.4E-06 3E-11 79.3 6.2 57 8-64 261-317 (322)
4 KOG4278|consensus 69.5 31 0.00068 37.7 9.5 43 10-52 489-531 (1157)
5 KOG1163|consensus 46.8 9 0.00019 37.3 1.0 21 81-101 291-313 (341)
6 KOG0921|consensus 36.3 53 0.0011 37.1 4.8 17 176-192 1226-1242(1282)
7 PF14473 RD3: RD3 protein 35.6 50 0.0011 28.7 3.7 44 4-47 79-123 (133)
8 cd05089 PTKc_Tie1 Catalytic do 35.3 66 0.0014 28.1 4.5 39 11-49 242-280 (297)
9 PF14223 UBN2: gag-polypeptide 29.2 1.2E+02 0.0025 23.9 4.6 39 5-43 70-108 (119)
10 PF05918 API5: Apoptosis inhib 27.2 21 0.00045 37.3 0.0 30 212-242 513-542 (556)
11 PF15359 CDV3: Carnitine defic 25.6 88 0.0019 26.9 3.5 30 194-223 58-98 (129)
12 cd05100 PTKc_FGFR3 Catalytic d 25.3 1.4E+02 0.003 26.8 4.8 40 11-50 260-299 (334)
13 KOG0200|consensus 22.9 1.4E+02 0.003 30.7 4.9 37 11-47 546-582 (609)
14 PF06273 eIF-4B: Plant specifi 21.7 2.3E+02 0.0051 29.5 6.2 13 239-251 204-216 (492)
15 cd05088 PTKc_Tie2 Catalytic do 21.5 1.5E+02 0.0033 26.2 4.3 47 11-57 247-294 (303)
16 PF05918 API5: Apoptosis inhib 20.4 34 0.00073 35.7 0.0 14 176-189 529-542 (556)
No 1
>KOG1165|consensus
Probab=99.51 E-value=2e-14 Score=138.57 Aligned_cols=66 Identities=50% Similarity=0.877 Sum_probs=62.1
Q ss_pred CCCCHHHHhcCCCchHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCCCCcccccccCCCCCC
Q psy14895 1 MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNMLKFGGS 66 (276)
Q Consensus 1 mstpiEeLCkGLPkEF~eIL~YIRSLkFdDkPDYdyIrsLFkqaLkr~gis~D~pYDWE~~k~~q~ 66 (276)
++|++++||+|+|.||+.||+|+|+|+|+|+|||+||++||.++|.+++..+|..|||..++.+..
T Consensus 256 r~T~i~~Lc~g~P~efa~Yl~yvR~L~F~E~PDYdylr~Lf~dvldr~g~t~Dg~yDW~~ln~g~g 321 (449)
T KOG1165|consen 256 RSTPIEVLCEGFPEEFATYLRYVRRLDFFETPDYDYLRKLFDDVLDRLGETDDGEYDWMGLNNGKG 321 (449)
T ss_pred ccCCHHHHHhcCHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCcccccccccccCCCCC
Confidence 478999999999999999999999999999999999999999999999999999999998875443
No 2
>KOG1163|consensus
Probab=99.40 E-value=2e-13 Score=127.85 Aligned_cols=63 Identities=63% Similarity=1.176 Sum_probs=60.2
Q ss_pred CCCCHHHHhcCCCchHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCCCCcccccccCCC
Q psy14895 1 MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNMLKF 63 (276)
Q Consensus 1 mstpiEeLCkGLPkEF~eIL~YIRSLkFdDkPDYdyIrsLFkqaLkr~gis~D~pYDWE~~k~ 63 (276)
++++++.||+|+|.||..|++|||+|.|+|+|||.||+++|+-++...+...|..|||...+.
T Consensus 241 ~s~~ie~LC~G~P~EF~myl~Y~R~L~F~E~Pdy~ylrqlFriLfr~ln~~~d~iyDW~~lkq 303 (341)
T KOG1163|consen 241 MSTPIEVLCKGFPAEFAMYLNYCRGLGFEEKPDYMYLRQLFRILFRTLNHQYDYIYDWTMLKQ 303 (341)
T ss_pred cCCCHHHHhCCCcHHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHHhhccccCCeEeeHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999998763
No 3
>KOG1164|consensus
Probab=98.28 E-value=1.4e-06 Score=79.26 Aligned_cols=57 Identities=33% Similarity=0.574 Sum_probs=52.4
Q ss_pred HhcCCCchHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCCCCcccccccCCCC
Q psy14895 8 LCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNMLKFG 64 (276)
Q Consensus 8 LCkGLPkEF~eIL~YIRSLkFdDkPDYdyIrsLFkqaLkr~gis~D~pYDWE~~k~~ 64 (276)
+|..+|.+|..|+.||++|+|+++|||.+|+.+|++++.+.++..+.+|||+.....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~~~~~~~~~~dw~~~~~~ 317 (322)
T KOG1164|consen 261 FGDLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKDVFDSEGSKEDSPFDWEVKLRL 317 (322)
T ss_pred ccCCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHhcCCCCCCCCcccccccc
Confidence 566788999999999999999999999999999999999999999999999976543
No 4
>KOG4278|consensus
Probab=69.49 E-value=31 Score=37.72 Aligned_cols=43 Identities=14% Similarity=0.332 Sum_probs=40.3
Q ss_pred cCCCchHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q psy14895 10 KGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTY 52 (276)
Q Consensus 10 kGLPkEF~eIL~YIRSLkFdDkPDYdyIrsLFkqaLkr~gis~ 52 (276)
+|||.-..++|.-|-+..-.|+|.+..|++.|+.+|..+.++.
T Consensus 489 eGCPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~~sSisd 531 (1157)
T KOG4278|consen 489 EGCPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFSSSSISD 531 (1157)
T ss_pred CCCCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccccccH
Confidence 5899999999999999999999999999999999999887764
No 5
>KOG1163|consensus
Probab=46.79 E-value=9 Score=37.35 Aligned_cols=21 Identities=43% Similarity=0.871 Sum_probs=15.3
Q ss_pred Cccceeecccc--ccCCCCCCCC
Q psy14895 81 SYDYVFDWNML--KFGGSRGPAG 101 (276)
Q Consensus 81 ~~dyvfdwN~~--~~~~s~~~~g 101 (276)
.|||+|||.|+ +++.+++.++
T Consensus 291 ~~d~iyDW~~lkqk~~q~~~~~~ 313 (341)
T KOG1163|consen 291 QYDYIYDWTMLKQKSQQSGRSRD 313 (341)
T ss_pred cCCeEeeHHHHHHHhhcccCCCc
Confidence 69999999999 5555544443
No 6
>KOG0921|consensus
Probab=36.34 E-value=53 Score=37.08 Aligned_cols=17 Identities=53% Similarity=0.970 Sum_probs=12.4
Q ss_pred cccCCCCCccccCCCCC
Q psy14895 176 DYRGSGGGEERGGGGGD 192 (276)
Q Consensus 176 ~~~~~~~~~~~~~~~~~ 192 (276)
-|||-++|+-|+-||||
T Consensus 1226 GyrGvsrgGfrnnggGd 1242 (1282)
T KOG0921|consen 1226 GYRGVSRGGFRNNGGGD 1242 (1282)
T ss_pred CCccccCCccccCCCCC
Confidence 47777777777777776
No 7
>PF14473 RD3: RD3 protein
Probab=35.58 E-value=50 Score=28.68 Aligned_cols=44 Identities=25% Similarity=0.459 Sum_probs=38.5
Q ss_pred CHHHHhcCCC-chHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy14895 4 PIEELCKGYP-GEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHR 47 (276)
Q Consensus 4 piEeLCkGLP-kEF~eIL~YIRSLkFdDkPDYdyIrsLFkqaLkr 47 (276)
.+|.||..++ .+-..++.-.|.|--+..|.-.-|-.+|+.+++.
T Consensus 79 qLE~lCski~P~~~g~vI~RFRellae~e~~~~Ev~~iFr~vl~e 123 (133)
T PF14473_consen 79 QLEDLCSKIPPCECGPVISRFRELLAENEPEVWEVPRIFRSVLQE 123 (133)
T ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4789998876 5888999999999889999999999999999875
No 8
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=35.28 E-value=66 Score=28.13 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=34.5
Q ss_pred CCCchHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcC
Q psy14895 11 GYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKG 49 (276)
Q Consensus 11 GLPkEF~eIL~YIRSLkFdDkPDYdyIrsLFkqaLkr~g 49 (276)
.++.++.+++..|-..+..++|+++.|.+.|.+++....
T Consensus 242 ~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~~ 280 (297)
T cd05089 242 NCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEARK 280 (297)
T ss_pred CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhc
Confidence 367889999999999999999999999999999887654
No 9
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=29.18 E-value=1.2e+02 Score=23.86 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=31.2
Q ss_pred HHHHhcCCCchHHHHHHHHhCCCCCCCCChHHHHHHHHH
Q psy14895 5 IEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRN 43 (276)
Q Consensus 5 iEeLCkGLPkEF~eIL~YIRSLkFdDkPDYdyIrsLFkq 43 (276)
+..++.+||..|..+...|+......+-.++.+...|..
T Consensus 70 v~~iL~~Lp~~y~~~~~~i~~~~~~~~~t~~el~~~L~~ 108 (119)
T PF14223_consen 70 VSKILRSLPPSYDTFVTAIRNSKDLPKMTLEELISRLLA 108 (119)
T ss_pred HHHHHhcCCchhHHHHHHHHhcCCCCcCCHHHHHHHHHH
Confidence 456788999999999999998877666678888777754
No 10
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=27.24 E-value=21 Score=37.26 Aligned_cols=30 Identities=37% Similarity=0.627 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCcccccCCCCCccccCC
Q psy14895 212 KFYFPPSAPNAASRPFVDYRGSGGGEERGGG 242 (276)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (276)
.+|-||+-.-.+.-.= .|||.|||.+||++
T Consensus 513 ~~y~~p~~k~ss~~~~-~~~~~g~gr~rg~~ 542 (556)
T PF05918_consen 513 QQYVPPSGKYSSNGGN-SGRGRGGGRGRGRR 542 (556)
T ss_dssp -------------------------------
T ss_pred cccCCCCCCCcCCCCC-CCCCCCCCCCCCCC
Confidence 5677776432211100 57888887777665
No 11
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=25.65 E-value=88 Score=26.86 Aligned_cols=30 Identities=37% Similarity=0.686 Sum_probs=19.4
Q ss_pred cccccCCCC-----------CCCCCCCCCcccCCCCCCCCC
Q psy14895 194 SRMWKKPII-----------PPPVPEPENKFYFPPSAPNAA 223 (276)
Q Consensus 194 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 223 (276)
+-=|+|+.- ++|.|..-...|.||.+-++.
T Consensus 58 sGPWnk~~~~~~~~~~~~v~~~~~p~~~~gvY~PP~~R~~~ 98 (129)
T PF15359_consen 58 SGPWNKSAPAQAPPAPAPVEEPPEPATTSGVYRPPAARNTT 98 (129)
T ss_pred CCCCcCCCCCCCCCCCCccCCCCCCCCCCceecCccccccc
Confidence 567998762 122233355679999988776
No 12
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=25.34 E-value=1.4e+02 Score=26.84 Aligned_cols=40 Identities=5% Similarity=0.024 Sum_probs=34.3
Q ss_pred CCCchHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcCC
Q psy14895 11 GYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGF 50 (276)
Q Consensus 11 GLPkEF~eIL~YIRSLkFdDkPDYdyIrsLFkqaLkr~gi 50 (276)
.++.++..++..|-.....++|+++.|.+.|++++.....
T Consensus 260 ~~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~~~~ 299 (334)
T cd05100 260 NCTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTVTST 299 (334)
T ss_pred CCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhhhcCC
Confidence 4677899999999999999999999999999998865543
No 13
>KOG0200|consensus
Probab=22.89 E-value=1.4e+02 Score=30.70 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=34.1
Q ss_pred CCCchHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q psy14895 11 GYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHR 47 (276)
Q Consensus 11 GLPkEF~eIL~YIRSLkFdDkPDYdyIrsLFkqaLkr 47 (276)
.|+.|+..||..|-....+++|....|.+.|...|..
T Consensus 546 ~c~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~l~~ 582 (609)
T KOG0200|consen 546 HCSDEIYDLMKSCWNADPEDRPTFSECVEFFEKHLQD 582 (609)
T ss_pred CCCHHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999997764
No 14
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=21.68 E-value=2.3e+02 Score=29.54 Aligned_cols=13 Identities=38% Similarity=0.800 Sum_probs=7.4
Q ss_pred ccCCCCCCccccc
Q psy14895 239 RGGGGGDSSRMWK 251 (276)
Q Consensus 239 ~~~~~~~~~~~~~ 251 (276)
++++++|.+.-|-
T Consensus 204 ~~~~~~~dsD~W~ 216 (492)
T PF06273_consen 204 RDSSGADDSDRWG 216 (492)
T ss_pred CCCCCCCchhhcc
Confidence 3444556666774
No 15
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=21.52 E-value=1.5e+02 Score=26.16 Aligned_cols=47 Identities=6% Similarity=0.188 Sum_probs=37.0
Q ss_pred CCCchHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHcC-CCCCcccc
Q psy14895 11 GYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKG-FTYDYVFD 57 (276)
Q Consensus 11 GLPkEF~eIL~YIRSLkFdDkPDYdyIrsLFkqaLkr~g-is~D~pYD 57 (276)
.++.++.+++..|-....+++|+.+.+...|.+++.... +..+..||
T Consensus 247 ~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~~~~~~~~~~~~ 294 (303)
T cd05088 247 NCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTYVNTTLYE 294 (303)
T ss_pred CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 366789999999999999999999999999988877554 33334443
No 16
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=20.35 E-value=34 Score=35.73 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=0.0
Q ss_pred cccCCCCCccccCC
Q psy14895 176 DYRGSGGGEERGGG 189 (276)
Q Consensus 176 ~~~~~~~~~~~~~~ 189 (276)
-|||.|||.+||++
T Consensus 529 ~~~~~g~gr~rg~~ 542 (556)
T PF05918_consen 529 SGRGRGGGRGRGRR 542 (556)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
Confidence 47777777666655
Done!