RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14895
(276 letters)
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 37.6 bits (87), Expect = 0.007
Identities = 31/168 (18%), Positives = 41/168 (24%), Gaps = 23/168 (13%)
Query: 94 GGSRGPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSN 153
RG P + D PP S + A P PP +
Sbjct: 2602 VDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPE--------RPR 2653
Query: 154 NKPVPNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENKF 213
+ P P RV P A R R + ++ P V +
Sbjct: 2654 DDPAP---GRVSRPRRARRL-----------GRAAQASSPPQRPRRRAARPTVGSLTSLA 2699
Query: 214 YFPPSAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPE 261
PP P P + S + P PP VP
Sbjct: 2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAP-APPAVPA 2746
Score = 28.4 bits (63), Expect = 6.0
Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 65 GSRGPAGAQPVGRKIKSYDYVFDWNMLKFGGSRGPAGAQPVAGDTPT-NPPGVDA---PP 120
G P A RK +S + GG A PV PT P V A PP
Sbjct: 371 GRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPP 430
Query: 121 ASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKP 156
+ G + P PP + +PA + + P
Sbjct: 431 PATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDP 466
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 37.1 bits (86), Expect = 0.009
Identities = 28/152 (18%), Positives = 41/152 (26%), Gaps = 24/152 (15%)
Query: 98 GPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKPV 157
AQP A + P DAPP + + +PA S + P
Sbjct: 464 DERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA 523
Query: 158 PNIVPRVLAPNAASRPFVDYRGSGGG---------------EERGGGGGDSSRMWKKPII 202
P A +GG +RG +++ P
Sbjct: 524 AAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAA 583
Query: 203 PP---------PVPEPENKFYFPPSAPNAASR 225
P VP P + + PN A+R
Sbjct: 584 APKPAAPRVAVQVPTPRARAATGDAPPNGAAR 615
Score = 28.7 bits (64), Expect = 4.7
Identities = 19/129 (14%), Positives = 33/129 (25%), Gaps = 7/129 (5%)
Query: 99 PAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHP-PTKSYHSPAVISSNNKPV 157
P A A PP APPA+ R ++ + +P
Sbjct: 412 PKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPP 471
Query: 158 PNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENKFYFPP 217
+ AP + + P + + + + P P
Sbjct: 472 ADSGSAS-APASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA-----AA 525
Query: 218 SAPNAASRP 226
+ P +RP
Sbjct: 526 APPAPEARP 534
Score = 28.3 bits (63), Expect = 5.4
Identities = 28/142 (19%), Positives = 36/142 (25%), Gaps = 21/142 (14%)
Query: 90 MLKF-----GGSRGPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSY 144
ML F GG G G A PA RA G P
Sbjct: 355 MLAFEPAVTGGGAPGGGVPAR-------VAG--AVPAPGARAAAAVGASAVPAVTAVTG- 404
Query: 145 HSPAVISSNNKPVPNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPP 204
+ + R AP AA P + GD+ K
Sbjct: 405 -AAGAALAPKAAAAAAATRAEAPPAAPAP-----PATADRGDDAADGDAPVPAKANARAS 458
Query: 205 PVPEPENKFYFPPSAPNAASRP 226
+ + PP+ +AS P
Sbjct: 459 ADSRCDERDAQPPADSGSASAP 480
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 33.4 bits (77), Expect = 0.12
Identities = 22/135 (16%), Positives = 30/135 (22%), Gaps = 6/135 (4%)
Query: 93 FGGSRGPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISS 152
A+P A P P AP + + P AV +
Sbjct: 604 ASSGPPEEAARPAAPAAPAAPAA-PAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDA 662
Query: 153 NNKPVPNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENK 212
++ A AA P + P P +
Sbjct: 663 SDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQ-- 720
Query: 213 FYFPPSAPNAASRPF 227
PP A AS P
Sbjct: 721 ---PPQAAQGASAPS 732
Score = 31.5 bits (72), Expect = 0.51
Identities = 30/171 (17%), Positives = 44/171 (25%), Gaps = 12/171 (7%)
Query: 94 GGSRGPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSN 153
G + G AG + + PP A PA+ + PA S+
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAA------PAEASAA 642
Query: 154 NKPVPNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENKF 213
P A G G + GG ++ P P
Sbjct: 643 PAPGVAAPEHHPKHVAVPDA---SDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP- 698
Query: 214 YFPPSAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPEN 264
AP A+ P + G S+ P PEP++
Sbjct: 699 --AQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDD 747
Score = 29.6 bits (67), Expect = 2.0
Identities = 25/134 (18%), Positives = 33/134 (24%), Gaps = 15/134 (11%)
Query: 93 FGGSRGPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYH--SPAVI 150
G G A P AP A+ A +PQ P + P+
Sbjct: 387 VAGGAGAPAAAA-PSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445
Query: 151 SSNNKPVPNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPE 210
+ P AP+A P E + P P P
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAP-----APAAAPEPTAAPAPAPPAAPAPAAAPAAPA-- 498
Query: 211 NKFYFPPSAPNAAS 224
P+AP A
Sbjct: 499 -----APAAPAGAD 507
Score = 28.8 bits (65), Expect = 3.6
Identities = 21/130 (16%), Positives = 29/130 (22%), Gaps = 9/130 (6%)
Query: 97 RGPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKP 156
R A P A PA+ + P + PA +
Sbjct: 383 RRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAA--AAPAAAAAPAPAAAPQPAPAPAPAPA 440
Query: 157 VPNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENKFYFP 216
P A P + + PP P P
Sbjct: 441 PP---SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA----A 493
Query: 217 PSAPNAASRP 226
P+AP A + P
Sbjct: 494 PAAPAAPAAP 503
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 33.5 bits (76), Expect = 0.13
Identities = 40/152 (26%), Positives = 55/152 (36%), Gaps = 10/152 (6%)
Query: 64 GGSRGPAGAQPVGRKIKSYDYVFDWNMLKFGGSRGPAGAQPVAGDTPTNPPGVDAPPASR 123
G +R PA A R + G +R PA A TP PP APPA +
Sbjct: 732 GRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAP--TPQPPP--QAPPAPQ 787
Query: 124 TRAGGTNGEGESPQHPPTKSYHSPAVISSNNKPVPNIVPRVLAPNAAS-RPFVDYRGSGG 182
R G PQ PT P P I+ ++L RP + +
Sbjct: 788 QRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALE 847
Query: 183 GEERGG-----GGGDSSRMWKKPIIPPPVPEP 209
+ G G G S ++ + P+ PPV +P
Sbjct: 848 RQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQP 879
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 33.3 bits (76), Expect = 0.15
Identities = 25/139 (17%), Positives = 35/139 (25%), Gaps = 14/139 (10%)
Query: 90 MLKFGGSRGPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAV 149
ML F + GA P T P PA+ A P P A
Sbjct: 360 MLAFRPGQSGGGAGPA---TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPA------AAP 410
Query: 150 ISSNNKPVPNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPI--IPPPVP 207
++ P +P + + G GG + P P
Sbjct: 411 AAAAAARAVAAAPARRSPAPEALAAARQASARGP---GGAPAPAPAPAAAPAAAARPAAA 467
Query: 208 EPENKFYFPPSAPNAASRP 226
P +AP A+
Sbjct: 468 GPRPVAAAAAAAPARAAPA 486
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model describes a subset of pyruvate dehydrogenase
complex dihydrolipoamide acetyltransferase specifically
close by both phylogenetic and per cent identity (UPGMA)
trees. Members of this set include two or three copies
of the lipoyl-binding domain. E. coli AceF is a member
of this model, while mitochondrial and some other
bacterial forms belong to a separate model [Energy
metabolism, Pyruvate dehydrogenase].
Length = 546
Score = 31.8 bits (72), Expect = 0.40
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 75 VGRKIKSYDYVFDWNMLKFGGSRGPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGE 134
VG + + D + L GS P + P P + +
Sbjct: 176 VGDSVPTGDLIL---TLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAA-PAAAKAQAP 231
Query: 135 SPQHPPTK-----SYHSPAV 149
+PQ T+ + +PAV
Sbjct: 232 APQQAGTQNPAKVDHAAPAV 251
>gnl|CDD|153410 cd07956, Anticodon_Ia_Arg, Anticodon-binding domain of arginyl
tRNA synthetases. This domain is found in arginyl tRNA
synthetases (ArgRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ArgRS catalyzes the
transfer of arginine to the 3'-end of its tRNA.
Length = 156
Score = 30.3 bits (69), Expect = 0.54
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 53 DYVFDWN-MLKFGGSRGP 69
DY FDW ML F G GP
Sbjct: 20 DYTFDWERMLSFEGDTGP 37
Score = 30.3 bits (69), Expect = 0.54
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 83 DYVFDWN-MLKFGGSRGP 99
DY FDW ML F G GP
Sbjct: 20 DYTFDWERMLSFEGDTGP 37
>gnl|CDD|220232 pfam09421, FRQ, Frequency clock protein. The frequency clock
protein, is the central component of the frq-based
circadian negative feedback loop, regulates various
aspects of the circadian clock in Neurospora crassa.
This protein has been shown to interact with itself via
a coiled-coil.
Length = 989
Score = 31.1 bits (70), Expect = 0.81
Identities = 32/124 (25%), Positives = 38/124 (30%), Gaps = 15/124 (12%)
Query: 98 GPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKPV 157
G + V T P VDA A G +P PP S SS +P+
Sbjct: 309 GKISGRNVRRTQSTLTPSVDAALPPVQ-AQQQEGTQMAPPQPP--SNFITNPFSSVPEPL 365
Query: 158 ------------PNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPP 205
P+ R +AS D SGG G G S P PPP
Sbjct: 366 REARILPQEGQNPHKKRRSKDNGSASNSNGDQTESGGTGTSSGDGNGSGNNTSPPGAPPP 425
Query: 206 VPEP 209
P
Sbjct: 426 EQRP 429
>gnl|CDD|170568 PRK10610, PRK10610, chemotaxis regulatory protein CheY;
Provisional.
Length = 129
Score = 29.2 bits (65), Expect = 1.0
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 22/78 (28%)
Query: 24 RSLRFEEKPDYSYTRQLFRNLFHRKGF-----TYDYVFDWNMLKFGGSRGPAGAQPVGRK 78
+ L+F D+S R++ RNL GF D V N L+ GG
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG------------- 50
Query: 79 IKSYDYVF-DWNMLKFGG 95
+ +V DWNM G
Sbjct: 51 ---FGFVISDWNMPNMDG 65
>gnl|CDD|178389 PLN02792, PLN02792, oxidoreductase.
Length = 536
Score = 29.9 bits (67), Expect = 1.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 185 ERGGGGGDSSRMWKKPIIPPPVPEPENKFYF 215
++ GG S R++ P IP P PEP F F
Sbjct: 122 QKAAGGYGSLRIYSLPRIPVPFPEPAGDFTF 152
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 29.8 bits (67), Expect = 1.5
Identities = 27/121 (22%), Positives = 29/121 (23%), Gaps = 18/121 (14%)
Query: 103 QPVAGDTPTNP---PGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKPVPN 159
Q G P P P AP R R G E Q + Y P
Sbjct: 169 QQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQ--RRRDYDHPR----------- 215
Query: 160 IVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENKFYFPPSA 219
P P + G RGG G I P P P P
Sbjct: 216 --PDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPG 273
Query: 220 P 220
P
Sbjct: 274 P 274
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 28.6 bits (64), Expect = 1.6
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 94 GGSRGPAGAQPVAG-DTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSY-------H 145
G S G + P AG N P A P + AG + GE S + +
Sbjct: 9 GVSSGSSAPAPPAGPGPGPNAPPAPAAPGVDSSAGSSGGEAGSSGSNSSNTTGDSSTGDQ 68
Query: 146 SPAVISSNNKPVPNIV 161
SPA +++N P
Sbjct: 69 SPAAAAAHNSSPPEGP 84
>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional.
Length = 694
Score = 29.9 bits (67), Expect = 1.8
Identities = 29/123 (23%), Positives = 39/123 (31%), Gaps = 12/123 (9%)
Query: 91 LKFGGSRGPAGA-QPVAGDTPTNPPGV--DAPPASRTRAGGTNGEGESPQHPPTKSYHSP 147
L+ SR P GA P + P PP + PA RA P++
Sbjct: 422 LRLLSSRQPPGAPAPRRDNDPPPPPRARPGSTPACARRARAQRARDAGPEYVDPLGAL-- 479
Query: 148 AVISSNNKPVPNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVP 207
+ +P P AA P Y GGG R ++ + PP
Sbjct: 480 -------RRLPAGAAPPPEPAAAPSPATYYTRMGGGPPRLPPRNRATETLRPDWGPPAAA 532
Query: 208 EPE 210
PE
Sbjct: 533 PPE 535
>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5). This
family consists of apoptosis inhibitory protein 5 (API5)
sequences from several organisms. Apoptosis or
programmed cell death is a physiological form of cell
death that occurs in embryonic development and organ
formation. It is characterized by biochemical and
morphological changes such as DNA fragmentation and cell
volume shrinkage. API5 is an anti apoptosis gene located
in human chromosome 11, whose expression prevents the
programmed cell death that occurs upon the deprivation
of growth factors.
Length = 543
Score = 29.6 bits (66), Expect = 1.9
Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 183 GEERGGGGGDSSRMWKKPIIPPPVPEPENKFYFPPSAPNAASRPFVDYRGSGGGEERGGG 242
G +R G ++ KK P + K Y S S+ Y G G RG G
Sbjct: 476 GGKRPANGKGNNVPAKKS-----RPSNDQKQYVNKSG-EGISKVGQSYGGRGRTRGRGRG 529
Query: 243 GGDSS 247
GG
Sbjct: 530 GGGGR 534
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 29.3 bits (65), Expect = 2.1
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 98 GPAGAQPVAGDTPTNP-PGVDAPPASRTRAGGTNGEGESPQHPPTK 142
P Q T P V PP++ T + + ++PQ P K
Sbjct: 113 APKQEQSQTTTESTTPKTKVTTPPSTNTPQPMQSTKSDTPQSPTIK 158
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 29.2 bits (66), Expect = 2.5
Identities = 16/62 (25%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 98 GPAGAQPVAGDTPT-NPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKP 156
Q V DT T P PA+ TN + + P PAV N
Sbjct: 155 SQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPA-----PAVDPQQNAV 209
Query: 157 VP 158
V
Sbjct: 210 VA 211
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 29.3 bits (66), Expect = 2.7
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 99 PAGAQPVAGDTPT--NPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKP 156
PA A P P V AP A+ A P + +P ++ +
Sbjct: 407 PAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRV 466
Query: 157 VPNIVPRVLAPNAASRP 173
P AP A+ P
Sbjct: 467 APEPAVASAAPAPAAAP 483
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 29.1 bits (65), Expect = 3.0
Identities = 14/54 (25%), Positives = 20/54 (37%)
Query: 174 FVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENKFYFPPSAPNAASRPF 227
F DY+ S S K+ + P PE K P + P++ R F
Sbjct: 197 FKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIF 250
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183). This
family consists of several eukaryotic proteins of around
360 residues in length. The function of this family is
unknown.
Length = 317
Score = 28.9 bits (65), Expect = 3.0
Identities = 21/76 (27%), Positives = 24/76 (31%), Gaps = 6/76 (7%)
Query: 167 PNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENKFYFPPSAPNAASRP 226
RP G GGG GGGGG S PP P ++ F P S
Sbjct: 183 VRGGPRPERAGYGGGGGGGGGGGGGGGSGP------GPPPPGFKSSFPPPYGPGAGPSSG 236
Query: 227 FVDYRGSGGGEERGGG 242
+ G G G
Sbjct: 237 YGSGGTRSGQGGWGPG 252
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 29.2 bits (66), Expect = 3.1
Identities = 11/67 (16%), Positives = 14/67 (20%)
Query: 199 KPIIPPPVPEPENKFYFPPSAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPP 258
P P P P+A P + + PI P
Sbjct: 525 PPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEP 584
Query: 259 VPEPENK 265
P P
Sbjct: 585 TPSPTKD 591
Score = 28.0 bits (63), Expect = 5.7
Identities = 11/74 (14%), Positives = 15/74 (20%)
Query: 139 PPTKSYHSPAVISSNNKPVPNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWK 198
T P S +P+ A P + +
Sbjct: 518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577
Query: 199 KPIIPPPVPEPENK 212
PI P P P
Sbjct: 578 PPIPEEPTPSPTKD 591
>gnl|CDD|217975 pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase.
Members of this family have a predicted zinc binding
motif characteristic of neutral zinc metallopeptidases
(Prosite:PDOC00129).
Length = 292
Score = 28.6 bits (64), Expect = 3.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 176 DYRGSGGGEERGGGGGDSSRMWKKPII 202
D RGS GG GGGGG K ++
Sbjct: 14 DRRGSSGGGGNGGGGGFRLGGGKTGLV 40
Score = 28.6 bits (64), Expect = 3.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 229 DYRGSGGGEERGGGGGDSSRMWKKPII 255
D RGS GG GGGGG K ++
Sbjct: 14 DRRGSSGGGGNGGGGGFRLGGGKTGLV 40
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 28.8 bits (65), Expect = 3.5
Identities = 17/84 (20%), Positives = 22/84 (26%), Gaps = 3/84 (3%)
Query: 96 SRGPAGAQPVAGDTPTNPPGVDAPPAS---RTRAGGTNGEGESPQHPPTKSYHSPAVISS 152
++ P A P A P P AP + P +PA +
Sbjct: 62 AQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAE 121
Query: 153 NNKPVPNIVPRVLAPNAASRPFVD 176
A AA RP V
Sbjct: 122 RAAAENAARRLARAAAAAPRPRVP 145
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 28.7 bits (64), Expect = 4.2
Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 11/112 (9%)
Query: 120 PASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKPVPNIVPRVLAPNAASRPFVDYRG 179
+S + T S S S + SN + P+ + S P
Sbjct: 304 SSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRNKSNS-SPKSHSSANGSVPSSSVSD 362
Query: 180 SGGGEERGGGGGDSSRMWKKPIIPPPVPE------PENKFYFPPSAPNAASR 225
+ ++R +R KK PENK S P+A R
Sbjct: 363 NESKQKRASKSSSGARDSKKDASGMSANGTVENCIPENKI----STPSAIER 410
>gnl|CDD|235466 PRK05439, PRK05439, pantothenate kinase; Provisional.
Length = 311
Score = 28.2 bits (64), Expect = 4.9
Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 2/14 (14%)
Query: 42 RNLFHRKGF--TYD 53
R L RKGF +YD
Sbjct: 137 RGLMKRKGFPESYD 150
>gnl|CDD|219118 pfam06640, P_C, P protein C-terminus. This family represents the
C-terminus of plant P proteins. The maize P gene is a
transcriptional regulator of genes encoding enzymes for
flavonoid biosynthesis in the pathway leading to the
production of a red phlobaphene pigment, and P proteins
are homologous to the DNA-binding domain of myb-like
transcription factors. All members of this family
contain the pfam00249 domain.
Length = 209
Score = 27.7 bits (61), Expect = 5.1
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 13/88 (14%)
Query: 107 GDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKPVPNIVPRVLA 166
G TP P A + A GE + HS S+ P PN
Sbjct: 18 GRTPGRSPKSSASRTKQADADQPGGEAAGDAAAASSPRHSDGARSAVVDPGPN------Q 71
Query: 167 PNAASRPFVDYRGSGGGEERGGGGGDSS 194
PN++S GS G E G + +
Sbjct: 72 PNSSS-------GSTGTAEEGPCSSEDA 92
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or
KIF3_like proteins. Subgroup of kinesins, which form
heterotrimers composed of 2 kinesins and one non-motor
accessory subunit. Kinesins II play important roles in
ciliary transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a
speed of about 6400 Angstroms per second. To achieve
that, kinesin head groups work in pairs. Upon replacing
ADP with ATP, a kinesin motor domain increases its
affinity for microtubule binding and locks in place.
Also, the neck linker binds to the motor domain, which
repositions the other head domain through the
coiled-coil domain close to a second tubulin dimer,
about 80 Angstroms along the microtubule. Meanwhile,
ATP hydrolysis takes place, and when the second head
domain binds to the microtubule, the first domain again
replaces ADP with ATP, triggering a conformational
change that pulls the first domain forward.
Length = 333
Score = 27.7 bits (62), Expect = 6.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 47 RKGFTYDYVFDWN 59
K FT+D V+D N
Sbjct: 47 PKVFTFDAVYDPN 59
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 27.9 bits (62), Expect = 6.9
Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 27/107 (25%)
Query: 119 PPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKPVPNIVPRVLAPNAASRPFVD-Y 177
R+ G EG+S + P+ S ++P P + AP+ P+
Sbjct: 11 AGGPRSHGGPDGDEGDSNPYYPSSFGSSW------DRPGPPVPEDYDAPSHRPPPYGGSN 64
Query: 178 RGSGGGEER------------GGGGGDSSRMWKKPIIPPPVPEPENK 212
GG + G GG +PPP P ++
Sbjct: 65 GDRHGGYQPLGQQDPSLYAGLGQNGGGG--------LPPPPYSPRDQ 103
>gnl|CDD|191179 pfam05053, Menin, Menin. MEN1, the gene responsible for multiple
endocrine neoplasia type 1, is a tumour suppressor gene
that encodes a protein called Menin which may be an
atypical GTPase stimulated by nm23.
Length = 618
Score = 28.0 bits (62), Expect = 7.0
Identities = 15/104 (14%), Positives = 26/104 (25%), Gaps = 13/104 (12%)
Query: 111 TNPPGVDAPPASRTRAGGTNG--EGESPQHPPTKSYHSPAVISSNNKPVPNIVPRVLAPN 168
R G G Q P +P + ++NN N
Sbjct: 462 KEAKESKEAAGEEAREGRRRGPRRESKSQEPSGGESPNPELPANNNNSNSN---NNNNNG 518
Query: 169 AASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENK 212
A + + G G + + +P P++K
Sbjct: 519 ADRKE----AAATTGNATTTSNGSGTSV----PLPVSSEPPQHK 554
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional.
Length = 796
Score = 27.9 bits (62), Expect = 7.1
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 203 PPPVPEPENKFYFPPSAPNAASRPF-VDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPE 261
+ SA + + G GGG GGGGG R W + P
Sbjct: 59 SASLVANGAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGWRFWLRLFAPADAHA 118
Query: 262 PE 263
E
Sbjct: 119 DE 120
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type).
N-type kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a
speed of about 6400 Angstroms per second. To achieve
that, kinesin head groups work in pairs. Upon replacing
ADP with ATP, a kinesin motor domain increases its
affinity for microtubule binding and locks in place.
Also, the neck linker binds to the motor domain, which
repositions the other head domain through the
coiled-coil domain close to a second tubulin dimer,
about 80 Angstroms along the microtubule. Meanwhile,
ATP hydrolysis takes place, and when the second head
domain binds to the microtubule, the first domain again
replaces ADP with ATP, triggering a conformational
change that pulls the first domain forward.
Length = 341
Score = 27.6 bits (62), Expect = 7.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 47 RKGFTYDYVFD 57
K FT+DYVFD
Sbjct: 39 DKSFTFDYVFD 49
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein. This family of proteins
is greatly expanded in Trichomonas vaginalis. The
proteins are composed of several glycine rich motifs
interspersed through the sequence. Although many
proteins have been annotated by similarity in the family
these annotations given the biased composition of the
sequences these are unlikely to be functionally
relevant.
Length = 248
Score = 27.6 bits (62), Expect = 7.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 177 YRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENKFYF 215
Y G GGG GGGGG SS + K P + ++F
Sbjct: 178 YFGGGGGHYAGGGGGGSSYISGKDGCIPNGSIHGSGYFF 216
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 27.7 bits (61), Expect = 8.3
Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 96 SRGPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNK 155
S P G Q T +NP PP S G SPQHPP+ + + +
Sbjct: 215 STEPVGTQGTT--TSSNPEPQTEPPPS------QRGPSGSPQHPPSTTSQDQSTTGDGQE 266
Query: 156 PVPNIVPRVLAPNAASRP 173
R P A S
Sbjct: 267 H----TQRRKTPPATSNR 280
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 27.8 bits (62), Expect = 8.7
Identities = 27/148 (18%), Positives = 37/148 (25%), Gaps = 16/148 (10%)
Query: 97 RGPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQ--HPPTKSYHSPAVISSNN 154
+ P ++R+ +G ES PP + P SS +
Sbjct: 794 AAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSES 853
Query: 155 KPVPNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENKFY 214
A R R E R G + P P P
Sbjct: 854 SKSKPAAAGGRARGKNGR-----RRPRPPEPRARPGAAAPPKAAAAAPPAGAPAP----- 903
Query: 215 FPPSAPNAASRPFVDYRGSGGGEERGGG 242
P A R + GG + RGG
Sbjct: 904 ----RPRPAPRVKLGPMPPGGPDPRGGF 927
>gnl|CDD|217859 pfam04045, P34-Arc, Arp2/3 complex, 34 kD subunit p34-Arc. Arp2/3
protein complex has been implicated in the control of
actin polymerisation in cells. The human complex
consists of seven subunits which include the actin
related Arp2 and Arp3, and five others referred to as
p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. This
family represents the p34-Arc subunit.
Length = 240
Score = 27.2 bits (61), Expect = 8.8
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 2 STPIEELCKGYPGE--------FPTFLLYSRSLRFEEKPDYSYTR-QLFRNLFH 46
P EL +G PG + TF+L+ R L ++ D + + Q FRN H
Sbjct: 154 KEPPLEL-QGVPGAAKAGDNVGYVTFVLFPRHLVTPKRRDNTISLIQTFRNYLH 206
>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional.
Length = 294
Score = 27.2 bits (60), Expect = 9.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 26 LRFEEKPDYSYTRQLF 41
L +EEKPDY ++F
Sbjct: 278 LSYEEKPDYDALIKIF 293
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 27.6 bits (61), Expect = 9.0
Identities = 22/87 (25%), Positives = 26/87 (29%), Gaps = 13/87 (14%)
Query: 99 PAGAQPVAGDTPTNP---PGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNK 155
PAG+ V P P PA G E SP PT
Sbjct: 384 PAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPT---------PEQQP 434
Query: 156 PVPNIVPRVLAPNAASRPFVDYRGSGG 182
PV P +P A++ V G G
Sbjct: 435 PVARSAPLPPSPQASAPRNVA-SGKPG 460
>gnl|CDD|147027 pfam04667, Endosulfine, cAMP-regulated phosphoprotein/endosulfine
conserved region. Conserved region found in both
cAMP-regulated phosphoprotein 19 (ARPP-19) and
Alpha/Beta endosulfine. No function has yet been
assigned to ARPP-19. Endosulfine is the endogenous
ligand for the ATP-dependent potassium (K ATP) channels
which occupy a key position in the control of insulin
release from the pancreatic beta cell by coupling cell
polarity to metabolism. In both cases the region
occupies the majority of the protein.
Length = 87
Score = 25.9 bits (57), Expect = 9.3
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 87 DWNMLKFGGSRGPAGAQPVAGDTP--TNPPGVDAPPASRTRAGGTNG 131
D+ + K GGS P+ G P NPP + A R R G+
Sbjct: 42 DYALAKAGGSTSQDPKGPLGGLRPKLQNPPQLKESIARR-RTSGSAA 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.139 0.443
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,291,358
Number of extensions: 1498847
Number of successful extensions: 1578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1454
Number of HSP's successfully gapped: 110
Length of query: 276
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 180
Effective length of database: 6,679,618
Effective search space: 1202331240
Effective search space used: 1202331240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.0 bits)