RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14895
(276 letters)
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase,
transferase, ATP- binding, phosphorylation,
nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB:
2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Length = 330
Score = 118 bits (298), Expect = 1e-31
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 1 MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNM 60
+TPIE LC+ +P E T+L Y R L F EKPDY Y R+LF +LF RKG+ +DY +DW
Sbjct: 237 RATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIG 295
Query: 61 LKFGGSRGPAGAQP 74
+ G P
Sbjct: 296 KQLPTPVGAVQQDP 309
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 116 bits (292), Expect = 4e-31
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 1 MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNM 60
MSTPIE LCKGYP EF T+L + RSLRF++KPDYSY RQLFRNLFHR+GF+YDYVFDWNM
Sbjct: 235 MSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNM 294
Query: 61 LK 62
LK
Sbjct: 295 LK 296
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
{Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
2csn_A*
Length = 298
Score = 114 bits (287), Expect = 2e-30
Identities = 28/61 (45%), Positives = 38/61 (62%)
Query: 1 MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNM 60
STP+ ELC G+P EF ++ Y+R+L F+ PDY Y + LF + R T D FDWN+
Sbjct: 238 QSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENFDWNL 297
Query: 61 L 61
L
Sbjct: 298 L 298
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 115 bits (290), Expect = 1e-29
Identities = 69/256 (26%), Positives = 101/256 (39%), Gaps = 16/256 (6%)
Query: 1 MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNM 60
++T IE LC+GYP EF ++ Y RSLRF++KPDYSY ++LFR+LF R+GF +DYVFDW +
Sbjct: 233 VATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFDWTI 292
Query: 61 LKFGGSR---GPAGAQPVGRKIKSYDYVFDWNMLKFGGSRGPAGAQPVAGDTPTNPPGVD 117
LK+ S+ P A G N + G G PP
Sbjct: 293 LKYQQSQIASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPIAS 352
Query: 118 APPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKPVPNIVPRVLAPNAASRPFVDY 177
++ +A N S + VIS++N + ++SR +
Sbjct: 353 VGTLAKQKAPVGNDASFSKE----------PVISASNFLGRSSGSSRRPAVSSSRDVMP- 401
Query: 178 RGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENKFYFPPSAPNAASRPFVDYRGSGGGE 237
E D+S + P P N S+ S +Y + G
Sbjct: 402 --IDTSEPSRTRATDASPGAFRRTSGPQKSSPVNSAEPKHSSSARHSSNVKNYESALKGI 459
Query: 238 ERGGGGGDSSRMWKKP 253
E GD +
Sbjct: 460 EGLNFDGDERVQYAAA 475
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino
acid sequence, binding sites, domain, models, molecular;
HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Length = 364
Score = 110 bits (276), Expect = 2e-28
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 1 MSTPIEELC---KGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFD 57
+ + C PGE ++ + L + EKP Y R + G D D
Sbjct: 281 NIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLD 340
Query: 58 WNMLKFGGSRGPAGAQPVGRKIK 80
++++ GG + + +I+
Sbjct: 341 LSVVENGGLKAKTITKKRAAEIE 363
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3;
transferase, pseudo kinase domain, vaccinia related
kinase, ATP-binding; 2.00A {Homo sapiens}
Length = 352
Score = 94.8 bits (236), Expect = 1e-22
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 1 MSTPIEELCKGY---PGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFD 57
P C + +L +L +EEKP Y+ R L +
Sbjct: 288 KPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRVSPYDPIG 347
Query: 58 WNM 60
M
Sbjct: 348 LPM 350
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding,
membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Length = 345
Score = 89.8 bits (223), Expect = 5e-21
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 1 MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNM 60
S E FL+ + SL ++EKP+Y +++ G D++
Sbjct: 283 QSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGIPLGP-----LDFST 337
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.65
Identities = 6/16 (37%), Positives = 6/16 (37%), Gaps = 4/16 (25%)
Query: 212 KFYFPPSAP----NAA 223
K Y SAP A
Sbjct: 30 KLYADDSAPALAIKAT 45
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase;
1.90A {Clostridium thermocellum} SCOP: a.102.1.2
b.1.18.2
Length = 639
Score = 30.6 bits (69), Expect = 0.69
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 135 SPQHPPTKSYHSPAVISSNNKPVPNIVPRVLAPNAASRPFVDYRGS 180
P +P + + +P P + V + +VD + S
Sbjct: 501 PPMNP----HDRRSGADGIWEPWPGYL--VGGGWPGPKDWVDIQDS 540
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 29.3 bits (65), Expect = 1.4
Identities = 14/74 (18%), Positives = 18/74 (24%)
Query: 68 GPAGAQPVGRKIKSYDYVFDWNMLKFGGSRGPAGAQPVAGDTPTNPPGVDAPPASRTRAG 127
+G P G + F + P P P P PP + T
Sbjct: 10 HSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDS 69
Query: 128 GTNGEGESPQHPPT 141
P P T
Sbjct: 70 VLQRILRGPTGPGT 83
Score = 27.8 bits (61), Expect = 5.0
Identities = 15/121 (12%), Positives = 27/121 (22%), Gaps = 5/121 (4%)
Query: 99 PAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKPVP 158
+ V + P A+ + P P A +
Sbjct: 9 HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD 68
Query: 159 NIVPRVLA-----PNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENKF 213
+++ R+L + P V Y G E + R P +
Sbjct: 69 SVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRV 128
Query: 214 Y 214
Sbjct: 129 E 129
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 29.4 bits (65), Expect = 1.5
Identities = 20/129 (15%), Positives = 32/129 (24%), Gaps = 4/129 (3%)
Query: 99 PAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKPVP 158
A Q TP P PP AG + G+ P S ++ P
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT----PAQ 66
Query: 159 NIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEPENKFYFPPS 218
+ + + S + + P+ P + P +
Sbjct: 67 EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126
Query: 219 APNAASRPF 227
A RP
Sbjct: 127 AMGQNMRPM 135
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 1.6
Identities = 23/119 (19%), Positives = 31/119 (26%), Gaps = 39/119 (32%)
Query: 89 NMLKFGGSRGPAGAQPV-AGDTPTNPPGVDAPPASRT---------RAGGTNGEGESPQH 138
NML S GP PV A T + T GG + Q
Sbjct: 1089 NMLLIS-SSGPIKT-PVGACATSVESVDI----GVETILSGKARICIVGGY----DDFQE 1138
Query: 139 PPTKSYHS-PAVISSNNKPVPNIVPRVLAPNAASRPFVDYRGSGGGEERGG-----GGG 191
+ + + A ++ + P SRP R G G G
Sbjct: 1139 EGSFEFGNMKATSNTLEEFEHGRTPA-----EMSRPA--------TTTRNGFMEAQGAG 1184
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 27.3 bits (61), Expect = 2.4
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 12 YPGEFPTFLLYSRSLRFEEKPDYSYTRQL 40
FL+ S + E Y+
Sbjct: 39 TASGEIVFLIRQDSYKKENATVGHYSLNF 67
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 28.3 bits (64), Expect = 3.0
Identities = 2/12 (16%), Positives = 5/12 (41%)
Query: 48 KGFTYDYVFDWN 59
+ F + V +
Sbjct: 50 RHFGFHVVLAED 61
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 28.0 bits (63), Expect = 3.9
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 53 DYVFDWN-MLKFGGSRGP 69
+Y F W ML F G GP
Sbjct: 470 NYEFKWERMLSFEGDTGP 487
Score = 28.0 bits (63), Expect = 3.9
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 83 DYVFDWN-MLKFGGSRGP 99
+Y F W ML F G GP
Sbjct: 470 NYEFKWERMLSFEGDTGP 487
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 27.6 bits (62), Expect = 4.4
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 48 KGFTYDYVFDWN 59
+ F +D+ FD
Sbjct: 121 QAFCFDFAFDET 132
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 28.0 bits (62), Expect = 4.7
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Query: 95 GSRGPAGAQPVAGDTPTNPPGVDAPPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNN 154
G+ G A A A P P A + PP A +++ +
Sbjct: 9 GTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPR-PAGDNATVAAGH 67
Query: 155 KPVPNIVPRVLAPNAASRPFV 175
+ + + A N + +V
Sbjct: 68 ATLREHLRDIKAENTDANFYV 88
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil,
microtubule, motor protein; HET: ADP; 1.80A {Homo
sapiens} PDB: 3b6v_A*
Length = 372
Score = 27.5 bits (62), Expect = 4.9
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 48 KGFTYDYVFDWN 59
K FT+D V+DWN
Sbjct: 68 KTFTFDAVYDWN 79
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 27.2 bits (61), Expect = 5.8
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 48 KGFTYDYVFDWN 59
+ F +D+ FD
Sbjct: 101 QAFCFDFAFDET 112
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 27.2 bits (61), Expect = 5.9
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 44 LFHRKGFTYDYVFDWN 59
+ + F +D+ F
Sbjct: 57 IVDQNEFHFDHAFPAT 72
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 27.3 bits (60), Expect = 6.1
Identities = 7/38 (18%), Positives = 9/38 (23%), Gaps = 4/38 (10%)
Query: 165 LAPNAASRPF----VDYRGSGGGEERGGGGGDSSRMWK 198
+ R D G G E GD +
Sbjct: 171 MENLVLDRGMATATFDGPGQGEMFEYKRIAGDYEKYTS 208
Score = 26.9 bits (59), Expect = 7.7
Identities = 10/67 (14%), Positives = 14/67 (20%), Gaps = 21/67 (31%)
Query: 189 GGGDSSRMWKKPIIPPPVPEPENKFYFPPSAPNAASRPF----VDYRGSGGGEERGGGGG 244
GG +S++ R D G G E G
Sbjct: 159 GGLESTKEE-----------------SFQMENLVLDRGMATATFDGPGQGEMFEYKRIAG 201
Query: 245 DSSRMWK 251
D +
Sbjct: 202 DYEKYTS 208
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 27.2 bits (61), Expect = 6.5
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 48 KGFTYDYVFDWN 59
K FT+D F
Sbjct: 67 KKFTFDRSFGPE 78
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 27.2 bits (61), Expect = 6.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 47 RKGFTYDYVFDWN 59
RK +T+D VF +
Sbjct: 54 RKTYTFDMVFGAS 66
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 27.2 bits (61), Expect = 6.6
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 48 KGFTYDYVFDWN 59
K + +D VF N
Sbjct: 51 KVYLFDKVFKPN 62
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D
3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D
2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 26.9 bits (59), Expect = 6.7
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 12 YPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFH 46
+ GE P L+ S +++ ++
Sbjct: 40 HSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVS 74
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free,
transport protein; 1.60A {Plasmodium falciparum} SCOP:
c.37.1.9
Length = 360
Score = 26.8 bits (60), Expect = 7.6
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 47 RKGFTYDYVFDWN 59
R F D VFD
Sbjct: 49 RHEFIVDKVFDDT 61
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 26.8 bits (60), Expect = 8.2
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 48 KGFTYDYVFDWN 59
+ FT+D V+D
Sbjct: 56 RTFTFDAVYDQT 67
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 27.0 bits (59), Expect = 8.5
Identities = 17/112 (15%), Positives = 24/112 (21%), Gaps = 1/112 (0%)
Query: 99 PAGAQPVAGDTPTNPPGVDA-PPASRTRAGGTNGEGESPQHPPTKSYHSPAVISSNNKPV 157
P G +A + G P T + PP SP S + P
Sbjct: 27 PTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPT 86
Query: 158 PNIVPRVLAPNAASRPFVDYRGSGGGEERGGGGGDSSRMWKKPIIPPPVPEP 209
+ S P S + G G +
Sbjct: 87 TPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKH 138
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 26.2 bits (58), Expect = 9.0
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 12 YPGEFPTFLLYSRSLRFEEKPDYSYTRQL 40
FL+ S + E Y+
Sbjct: 39 TASGEIVFLIRQDSYKKENATVGHYSLNF 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.139 0.443
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,683,553
Number of extensions: 291412
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 60
Length of query: 276
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 184
Effective length of database: 4,133,061
Effective search space: 760483224
Effective search space used: 760483224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.1 bits)