RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14895
         (276 letters)



>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 299

 Score = 85.3 bits (210), Expect = 5e-20
 Identities = 54/67 (80%), Positives = 60/67 (89%)

Query: 1   MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNM 60
           MSTPIE LCKGYP EF T+L + RSLRF++KPDYSY RQLFRNLFHR+GF+YDYVFDWNM
Sbjct: 233 MSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNM 292

Query: 61  LKFGGSR 67
           LKFG SR
Sbjct: 293 LKFGASR 299


>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 293

 Score = 83.7 bits (206), Expect = 2e-19
 Identities = 28/61 (45%), Positives = 38/61 (62%)

Query: 1   MSTPIEELCKGYPGEFPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFDWNM 60
            STP+ ELC G+P EF  ++ Y+R+L F+  PDY Y + LF  +  R   T D  FDWN+
Sbjct: 233 QSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENFDWNL 292

Query: 61  L 61
           L
Sbjct: 293 L 293


>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain
           {Clostridium thermocellum [TaxId: 1515]}
          Length = 441

 Score = 28.1 bits (62), Expect = 1.1
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 7/51 (13%)

Query: 131 GEGE-SPQHPPTKSYHSPAVISSNNKPVPNIVPRVLAPNAASRPFVDYRGS 180
           G G   P +P    +   +      +P P  +  V       + +VD + S
Sbjct: 372 GLGINPPMNP----HDRRSGADGIWEPWPGYL--VGGGWPGPKDWVDIQDS 416


>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
          Length = 354

 Score = 26.8 bits (58), Expect = 2.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 47 RKGFTYDYVFDWN 59
          +  FT+D VFD +
Sbjct: 45 QGSFTFDRVFDMS 57


>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
           domain, VH {Human (Homo sapiens), cluster 4 [TaxId:
           9606]}
          Length = 131

 Score = 25.8 bits (56), Expect = 3.5
 Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 16  FPTFLLYSRSLRFEEKPDYSYTRQLFRNLFHRKGFTYDYVFD-W 58
             T  L   SL+ E+   YS T   F  +       Y Y  D W
Sbjct: 78  KNTLYLQMNSLKTEDTAVYSCTTDGFIMIRGVSEDYYYYYMDVW 121


>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
           yoelii [TaxId: 73239]}
          Length = 219

 Score = 25.1 bits (54), Expect = 9.0
 Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 3/23 (13%)

Query: 197 WK---KPIIPPPVPEPENKFYFP 216
           W    K  + P + + E   +F 
Sbjct: 177 WNEGDKCCVIPTLQDDEISKHFK 199


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,182,056
Number of extensions: 58882
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 11
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.3 bits)