BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14896
(813 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/344 (32%), Positives = 176/344 (51%), Gaps = 19/344 (5%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
GP F+++P+ V+F L + LSC G P P W +L +D D
Sbjct: 4 GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRW--------KLNGTDVDIGMD 53
Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 580
R+++ G+L+IN+P + +D G+Y C A+N FG+I+S +L F ++ F + +
Sbjct: 54 FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 113
Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 639
+ G + C PP + ++Y W + +P++ +D R FVS + G LY + +E+ D GNY
Sbjct: 114 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--QDNRRFVSQETGNLYIAKVEKSDVGNY 171
Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 697
+C V + V++ GP PL + + K FP+T P + G V+LEC A
Sbjct: 172 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA--EKGTTVKLECFAL 229
Query: 698 GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756
G PVP+ W R G P+ R A N IL IPN + ED G Y C A N R + +
Sbjct: 230 GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 289
Query: 757 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ A+PN+ + D H+ + + W C+A G P TY W +NG+
Sbjct: 290 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 333
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 184/402 (45%), Gaps = 59/402 (14%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
GP F+++P+ V+F L + LSC G P P W +L +D D
Sbjct: 4 GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRW--------KLNGTDVDIGMD 53
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 307
R+++ G+L+IN+P + +D G+Y C A+N FG+I+S +L F ++ F + +
Sbjct: 54 FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 113
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 366
+ G + C PP + ++Y W + +P++ +D R FVS + G LY + +E+ D GNY
Sbjct: 114 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--QDNRRFVSQETGNLYIAKVEKSDVGNY 171
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 424
+C V + V++ GP PL + + K FP+T P + G V+LEC A
Sbjct: 172 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA--EKGTTVKLECFAL 229
Query: 425 GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKM-------------RGPYFIKQPT 470
G PVP+ W R G P+ R A N IL IPN + RG K
Sbjct: 230 GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 289
Query: 471 DVVFDLSKRSILNDITLS--------CYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
+ I+NDI ++ C A G P P+Y W K DPL +
Sbjct: 290 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG-----------DPLLTR 338
Query: 523 -RFTLSGGNL---IINDPRQVEDRGSYHCKASNKFGSIISES 560
R + G L I+N + D G Y C A NK G I S +
Sbjct: 339 DRIQIEQGTLNITIVN----LSDAGMYQCVAENKHGVIFSSA 376
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
+G L +Q DAG+Y C ++ G+N L + N+ Q+ N+ E
Sbjct: 256 NGILEIPNFQQEDAGSYECVAEN---SRGKNVAKGQLTFYAQPNWVQII--NDIHVAMEE 310
Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 742
+ V EC A G P P+Y W + G PL + L I V + D G Y C
Sbjct: 311 S------VFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCV 364
Query: 743 ASNDRSALESSVTISIQAE 761
A N + SS +S+ AE
Sbjct: 365 AENKHGVIFSSAELSVIAE 383
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 196 bits (497), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/344 (32%), Positives = 176/344 (51%), Gaps = 19/344 (5%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
GP F+++P+ V+F L + LSC G P P W +L +D D
Sbjct: 5 GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRW--------KLNGTDVDIGMD 54
Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 580
R+++ G+L+IN+P + +D G+Y C A+N FG+I+S +L F ++ F + +
Sbjct: 55 FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114
Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 639
+ G + C PP + ++Y W + +P++ +D R FVS + G LY + +E+ D GNY
Sbjct: 115 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--QDNRRFVSQETGNLYIAKVEKSDVGNY 172
Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 697
+C V + V++ GP PL + + K FP+T P + G V+LEC A
Sbjct: 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA--EKGTTVKLECFAL 230
Query: 698 GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756
G PVP+ W R G P+ R A N IL IPN + ED G Y C A N R + +
Sbjct: 231 GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 757 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ A+PN+ + D H+ + + W C+A G P TY W +NG+
Sbjct: 291 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 334
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 123/402 (30%), Positives = 184/402 (45%), Gaps = 59/402 (14%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
GP F+++P+ V+F L + LSC G P P W +L +D D
Sbjct: 5 GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRW--------KLNGTDVDIGMD 54
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG- 307
R+++ G+L+IN+P + +D G+Y C A+N FG+I+S +L F ++ F + +
Sbjct: 55 FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGNY 366
+ G + C PP + ++Y W + +P++ +D R FVS + G LY + +E+ D GNY
Sbjct: 115 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--QDNRRFVSQETGNLYIAKVEKSDVGNY 172
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVAF 424
+C V + V++ GP PL + + K FP+T P + G V+LEC A
Sbjct: 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA--EKGTTVKLECFAL 230
Query: 425 GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKM-------------RGPYFIKQPT 470
G PVP+ W R G P+ R A N IL IPN + RG K
Sbjct: 231 GNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Query: 471 DVVFDLSKRSILNDITLS--------CYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
+ I+NDI ++ C A G P P+Y W K DPL +
Sbjct: 291 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG-----------DPLLTR 339
Query: 523 -RFTLSGGNL---IINDPRQVEDRGSYHCKASNKFGSIISES 560
R + G L I+N + D G Y C A NK G I S +
Sbjct: 340 DRIQIEQGTLNITIVN----LSDAGMYQCVAENKHGVIFSSA 377
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
+G L +Q DAG+Y C ++ G+N L + N+ Q+ N+ E
Sbjct: 257 NGILEIPNFQQEDAGSYECVAEN---SRGKNVAKGQLTFYAQPNWVQII--NDIHVAMEE 311
Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 742
+ V EC A G P P+Y W + G PL + L I V + D G Y C
Sbjct: 312 S------VFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCV 365
Query: 743 ASNDRSALESSVTISIQAE 761
A N + SS +S+ AE
Sbjct: 366 AENKHGVIFSSAELSVIAE 384
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/351 (35%), Positives = 170/351 (48%), Gaps = 33/351 (9%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
GP F QP V+F + S + L+C A P +Y W K + + +L +P S
Sbjct: 3 GPVFEDQPLSVLF--PEESTEEQVLLACRARASPPATYRW-KMNGTEMKL-----EPGS- 53
Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 580
R L GGNL+I +P + +D G Y C ASN G+++S L FGF+ EF+ + R P
Sbjct: 54 -RHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKA 112
Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQIDAGNY 639
++ WG + C+PP +YPG++Y W + FPNF+ D R FVS G LY + D GNY
Sbjct: 113 HEGWGVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNY 172
Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----------GDK 689
SC S + F VF S F QL + F + KA G +
Sbjct: 173 SCLATSHMD-------FSTKSVF--SKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQ 223
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
V LEC AFG PVP W + L + + L IP+V ED+G Y C A N +
Sbjct: 224 VTLECFAFGNPVPRIKWRKVDGSL--SPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGR 281
Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
I +QA+P + ++D D ++L W C A G P T W RNGE
Sbjct: 282 DTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGE 332
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 187/411 (45%), Gaps = 70/411 (17%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
GP F QP V+F + S + L+C A P +Y W K + + +L +P S
Sbjct: 3 GPVFEDQPLSVLF--PEESTEEQVLLACRARASPPATYRW-KMNGTEMKL-----EPGS- 53
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 307
R L GGNL+I +P + +D G Y C ASN G+++S L FGF+ EF+ + R P
Sbjct: 54 -RHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKA 112
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQIDAGNY 366
++ WG + C+PP +YPG++Y W + FPNF+ D R FVS G LY + D GNY
Sbjct: 113 HEGWGVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNY 172
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----------GDK 416
SC S + F VF S F QL + F + KA G +
Sbjct: 173 SCLATSHMD-------FSTKSVF--SKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQ 223
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK----------------- 459
V LEC AFG PVP W + L + + L IP+V
Sbjct: 224 VTLECFAFGNPVPRIKWRKVDGSL--SPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGR 281
Query: 460 --MRGPYFIK-QPT--DVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVAN 514
++G ++ QP V+ D ++ I +++ C A G P P+ W +
Sbjct: 282 DTVQGRIIVQAQPEWLKVISD-TEADIGSNLRWGCAAAGKPRPTVRWLRNG--------- 331
Query: 515 LIDPL-SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 564
+PL S R + G+L + +ED G Y C A NK G+I + S +LA
Sbjct: 332 --EPLASQNRVEVLAGDLRFSK-LSLEDSGMYQCVAENKHGTIYA-SAELA 378
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 95/398 (23%), Positives = 139/398 (34%), Gaps = 75/398 (18%)
Query: 407 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS-----PLPRNAYFENFNRILTIPNVKMR 461
FPE ++V L C A P +Y W G+ P R+ I+ +
Sbjct: 15 FPEE-STEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDA 73
Query: 462 GPYFIKQPTDVVFDLSKRSILN---------------------DITLSCYA-GGYPNPSY 499
G Y V +S+ +IL + L C YP SY
Sbjct: 74 GVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGLSY 133
Query: 500 EWFKEDYVQDRLVANLIDPLSDKRF-TLSGGNLIINDPRQVEDRGSYHCKASNKF----G 554
W ++ N I P + F + + GNL I D G+Y C A++
Sbjct: 134 RWLLNEF------PNFI-PTDGRHFVSQTTGNLYIAR-TNASDLGNYSCLATSHMDFSTK 185
Query: 555 SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE 614
S+ S+ QL E AP I KA F P Y V + F
Sbjct: 186 SVFSKFAQL--NLAAEDTRLFAPSI------KARF--PAETYALVGQQVTLECFAFGNPV 235
Query: 615 DKRVFVSYDGAL--YFSALE---QI------DAGNYSCNVQ-SKVSDTGRNGPFFPLKVF 662
+ + DG+L ++ E QI D G Y C + SK DT + ++
Sbjct: 236 PRIKWRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQG------RII 289
Query: 663 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF 722
+ + LK ++ G +R C A G P P+ W R G PL E
Sbjct: 290 VQAQPEWLKVISDTEADI------GSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVL 343
Query: 723 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
L + +ED G Y C A N + +S +++QA
Sbjct: 344 AGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQA 381
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/351 (33%), Positives = 166/351 (47%), Gaps = 33/351 (9%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
GP F +QP +F + S +TL+C A P +Y W ++ + D
Sbjct: 4 GPVFEEQPAHTLF--PEGSAEEKVTLTCRARANPPATYRW--------KMNGTELKMGPD 53
Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 580
R+ L G+L+I++P + +D GSY C A+N G+++S L FGF+ EF+ + R P
Sbjct: 54 SRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKI 113
Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQIDAGNY 639
+ WG C PP +YP ++Y W + FPNF+ D R FVS G LY + E D GNY
Sbjct: 114 TEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNY 173
Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----------GDK 689
SC S + F VF S F QL + + + KA G
Sbjct: 174 SCFATSHID-------FITKSVF--SKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM 224
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
V LEC AFG PVP W + + + + + +L I NV ED+G Y C A N +
Sbjct: 225 VTLECFAFGNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGR 282
Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
I I A+P++ +TD D +DL W+C A G P W R+G+
Sbjct: 283 DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ 333
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 180/405 (44%), Gaps = 65/405 (16%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
GP F +QP +F + S +TL+C A P +Y W ++ + D
Sbjct: 4 GPVFEEQPAHTLF--PEGSAEEKVTLTCRARANPPATYRW--------KMNGTELKMGPD 53
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL-KRAPEIG 307
R+ L G+L+I++P + +D GSY C A+N G+++S L FGF+ EF+ +R P
Sbjct: 54 SRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKI 113
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQIDAGNY 366
+ WG C PP +YP ++Y W + FPNF+ D R FVS G LY + E D GNY
Sbjct: 114 TEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNY 173
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----------GDK 416
SC S + F VF S F QL + + + KA G
Sbjct: 174 SCFATSHID-------FITKSVF--SKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM 224
Query: 417 VRLECVAFGYPVPSYNWTR-RGSPLPRNAYFENFNRILTI------------PNVKMRGP 463
V LEC AFG PVP W + GS + E I + N+K R
Sbjct: 225 VTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDT 284
Query: 464 Y-----FIKQP--TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
Y QP DV+ D ++ I +D+ SC A G P P+ W ++
Sbjct: 285 YQGRIIIHAQPDWLDVITD-TEADIGSDLRWSCVASGKPRPAVRWLRDG----------- 332
Query: 517 DPL-SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 560
PL S R +SGG L + +ED G Y C A NK G++ + +
Sbjct: 333 QPLASQNRIEVSGGELRFSK-LVLEDSGMYQCVAENKHGTVYASA 376
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 96/398 (24%), Positives = 146/398 (36%), Gaps = 75/398 (18%)
Query: 407 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR--NAYFENFNRILTIPN---VKMR 461
FPE A +KV L C A P +Y W G+ L ++ + L I N K
Sbjct: 16 FPEG-SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDA 74
Query: 462 GPY---------------------FIKQPTDVVFDLSKRSILNDITLSCYAG-GYPNPSY 499
G Y F+++ + D K + + +C YP SY
Sbjct: 75 GSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSY 134
Query: 500 EWFKEDYVQDRLVANLIDPLSDKRF-TLSGGNLIINDPRQVEDRGSYHCKASNKF----G 554
W ++ N I P +RF + + GNL I + D G+Y C A++
Sbjct: 135 RWLLNEF------PNFI-PADGRRFVSQTTGNLYIAK-TEASDLGNYSCFATSHIDFITK 186
Query: 555 SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP--NFV 612
S+ S+ QL+ E + AP I KA F P Y + F N V
Sbjct: 187 SVFSKFSQLSLA--AEDARQYAPSI------KAKF--PADTYALTGQMVTLECFAFGNPV 236
Query: 613 EEDK---------RVFVSYDGALYFSALEQIDAGNYSCNVQS-KVSDTGRNGPFFPLKVF 662
+ K ++S + L+ ++ D G Y C ++ K DT + ++
Sbjct: 237 PQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDT------YQGRII 290
Query: 663 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF 722
H+ P+ G +R CVA G P P+ W R G PL E
Sbjct: 291 IHAQ------PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS 344
Query: 723 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
L + +ED G Y C A N + +S +++QA
Sbjct: 345 GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 153/348 (43%), Gaps = 22/348 (6%)
Query: 466 IKQPTDVVFDLSKRSILN---DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
+ QP + +K I++ +I + C A G P PS+ W + R DP
Sbjct: 13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR----NSRFFNIAKDPRVSM 68
Query: 523 RFTLSGGNLIIN---DPRQVEDRGSYHCKASNKFGSIISESVQLAFG---FIGEFNLKRA 576
R G L+I+ R E G Y C A NKFG+ +S ++L + NL
Sbjct: 69 R--RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLD-- 124
Query: 577 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS-ALEQID 635
P + + + C+PP P +W + +DKRV ++G LYFS + Q
Sbjct: 125 PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM-EPITQDKRVSQGHNGDLYFSNVMLQDM 183
Query: 636 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLE 693
+YSCN + + T + F LKV + +P+ + G + LE
Sbjct: 184 QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLE 243
Query: 694 CVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYICRASNDRSALES 752
C+A G P P W ++G LP + A FENFN+ L I NV ED GEY C ASN ++
Sbjct: 244 CIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH 303
Query: 753 SVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
++++ ++A P + + + D C A G P T W NGE
Sbjct: 304 TISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGE 351
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 109/418 (26%), Positives = 172/418 (41%), Gaps = 64/418 (15%)
Query: 185 KIPRGPYF---IKQPTDVVFDLSKRSILN---DITLSCYAGGYPNPSYEWFKEDYVQDRL 238
+IP P + QP + +K I++ +I + C A G P PS+ W + R
Sbjct: 2 EIPMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR----NSRF 57
Query: 239 VANLIDPLSDKRFTLSGGNLIIN---DPRQVEDRGSYHCKASNKFGSIISESVQLAFG-- 293
DP R G L+I+ R E G Y C A NKFG+ +S ++L
Sbjct: 58 FNIAKDPRVSMR--RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS 115
Query: 294 -FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA 352
+ NL P + + + C+PP P +W + +DKRV ++G
Sbjct: 116 PLWPKENLD--PVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM-EPITQDKRVSQGHNGD 172
Query: 353 LYFS-ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
LYFS + Q +YSCN + + T + F LKV + +P+ +
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232
Query: 412 KA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNV---------- 458
G + LEC+A G P P W ++G LP + A FENFN+ L I NV
Sbjct: 233 MVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFC 292
Query: 459 ----KM------------RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF 502
KM PY++ +P +++ + D L C A G P P+ +W
Sbjct: 293 LASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGE-----DGRLVCRANGNPKPTVQWM 347
Query: 503 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 560
+ L + +P + ++G +I D Q+ R Y C SN+ G +++ +
Sbjct: 348 VNG---EPLQSAPPNPNRE----VAGDTIIFRD-TQISSRAVYQCNTSNEHGYLLANA 397
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 615 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN 674
DK F +++ AL + + + D+G Y C +K+ R+ +K P+ +
Sbjct: 266 DKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI-RHTISVRVKAAPYWLDE------ 318
Query: 675 NFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFENFNRILTIPNV 731
PK AP G+ RL C A G P P+ W G PL P N E + +
Sbjct: 319 --PKNLILAP--GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDT 374
Query: 732 KVEDQGEYICRASNDRSALESSVTISI 758
++ + Y C SN+ L ++ +S+
Sbjct: 375 QISSRAVYQCNTSNEHGYLLANAFVSV 401
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 146/613 (23%), Positives = 239/613 (38%), Gaps = 110/613 (17%)
Query: 201 FDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNL 258
FD+ S + + L C A GYP P + W+K E + + V L+D+ +SG L
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV-----LNDRVKQVSG-TL 308
Query: 259 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK-AMFC 317
II D VED G Y C +N G ESV+ + K P ++G+ A+F
Sbjct: 309 IIKDA-VVEDSGKYLCVVNNSVGG---ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 364
Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-----S 372
T P W +D + + L ++++ D G Y C V+ +
Sbjct: 365 CQYTGNPIKTVSWMKD---------GKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESA 415
Query: 373 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN 432
+ S + G F V + FQ+ E + G V L+CVA G P P +
Sbjct: 416 EASAELKLGGRFDPPVIRQA-FQE------------ETMEPGPSVFLKCVAGGNPTPEIS 462
Query: 433 WTRRGSPLPRNAYFENFNRI---------LTIPNVKMR--GPYFIKQPTDV--------- 472
W G + N ++ + L I +V G Y + V
Sbjct: 463 WELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Query: 473 -------VFDLSKRSILNDITL--SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 523
+ + K++I+ TL +C GYP S W ++ N P++ K+
Sbjct: 523 NVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERD---------NRALPINRKQ 573
Query: 524 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQN 583
G LII + + D+ +Y C A N+ G S+++ + + A E G
Sbjct: 574 KVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI-IPFAFEEGPAQ 632
Query: 584 WGK--AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG----ALYFSALEQIDAG 637
G+ + C P +N W D + ED + S G L A+E AG
Sbjct: 633 VGQYLTLHCSVPGGDLPLNIDWTLD--GQAISEDLGITTSRVGRRGSVLTIEAVEASHAG 690
Query: 638 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF 697
N++C+ ++ G PL V+ + + P + K F + G ++EC A
Sbjct: 691 NFTCHARNL---AGHQQFTTPLNVYVPPRW--ILEPTD--KAFAQ----GSDAKVECKAD 739
Query: 698 GYPVPSYNWTRRGSPLPRNAYFENFNR---------ILTIPNVKVEDQGEYICRASND-R 747
G+P P W + P +++ + L + N++ ++G Y+C A N
Sbjct: 740 GFPKPQVTWKKAVGDTP--GEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIG 797
Query: 748 SALESSVTISIQA 760
S L + + IS+QA
Sbjct: 798 SGLSAVIMISVQA 810
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 92/378 (24%), Positives = 148/378 (39%), Gaps = 33/378 (8%)
Query: 456 PNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 515
P+ +GP F+K+PT+ + D S + + C A G P P W + D
Sbjct: 32 PDADQKGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTA 80
Query: 516 IDPLSDKRFTLSGGNLI-----INDPRQVEDRGSYHCKASNKFGSIISESVQL--AFGFI 568
+ + R S G L+ D RQ Y C A N+FGSIIS V +
Sbjct: 81 VGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQY 140
Query: 569 GEFNLKRAPEI-GNQNWGKAMFCDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYD 623
E ++ + I GN K + ++ V W D YFP E D + V
Sbjct: 141 YEADVNKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPG-AEYDGKYLVLPS 198
Query: 624 GALYFSALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
G L+ + D +Y C + +++ R V + + K +
Sbjct: 199 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMK 258
Query: 683 APKAGDKVRLECVAFGYPVPSYNW------TRRGSPLPRNAYFENFNRILTIPNVKVEDQ 736
+ L C A GYPVP + W T R + N + + L I + VED
Sbjct: 259 TYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 318
Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
G+Y+C +N +++ A + I + +D +TC+ G P T SW
Sbjct: 319 GKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 378
Query: 797 RNGE-LGHQMTDLLLKAV 813
++G+ +GH + L +++V
Sbjct: 379 KDGKAIGHSESVLRIESV 396
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 146/631 (23%), Positives = 229/631 (36%), Gaps = 102/631 (16%)
Query: 183 PDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
PD +GP F+K+PT+ + D S + + C A G P P W + D
Sbjct: 32 PDADQKGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTA 80
Query: 243 IDPLSDKRFTLSGGNLI-----INDPRQVEDRGSYHCKASNKFGSIISESVQL--AFGFI 295
+ + R S G L+ D RQ Y C A N+FGSIIS V +
Sbjct: 81 VGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQY 140
Query: 296 GEFNLKRAPEI-GNQNWGKAMFCDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYD 350
E ++ + I GN K + ++ V W D YFP E D + V
Sbjct: 141 YEADVNKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPG-AEYDGKYLVLPS 198
Query: 351 GALYFSALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
G L+ + D +Y C + +++ R V + + K +
Sbjct: 199 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMK 258
Query: 410 APKAGDKVRLECVAFGYPVPSYNW-------TRR-------------GSPLPRNAYFENF 449
+ L C A GYPVP + W TR+ G+ + ++A E+
Sbjct: 259 TYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 318
Query: 450 NRILTIPNVKMRGPYF-----IKQPTDVVFDLSKRSI--LNDITLSCYAGGYPNPSYEWF 502
+ L + N + G + P D +++ +C G P + W
Sbjct: 319 GKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 378
Query: 503 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ 562
K+ K S L I ++ ED+G Y C N S S +
Sbjct: 379 KD----------------GKAIGHSESVLRIESVKK-EDKGMYQCFVRNDRES-AEASAE 420
Query: 563 LAFGFIGEFN---LKRAPEIGNQNWGKAMF--CDPPTN-YPGVNYYWARDYFPNFVEEDK 616
L G G F+ +++A + G ++F C N P +++ N
Sbjct: 421 LKLG--GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQV 478
Query: 617 RVFVSYDGA----LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKF 672
+V+ +G L +++ D G Y C +SKV + L V+ +Q++
Sbjct: 479 GQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSA---KLNVYGLPYIRQME- 534
Query: 673 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF-NRILTIPNV 731
+A AG+ + + C GYP+ S W R LP N + F N L I NV
Sbjct: 535 --------KKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENV 586
Query: 732 -KVEDQGEYICRASND-----RSALESSVTI 756
+ DQ Y C A N R +LE V +
Sbjct: 587 ERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 133/342 (38%), Gaps = 50/342 (14%)
Query: 474 FDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNL 531
FD+ S + + L C A GYP P + W+K E + + V L+D+ +SG L
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV-----LNDRVKQVSG-TL 308
Query: 532 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK-AMFC 590
II D VED G Y C +N G ESV+ + K P ++G+ A+F
Sbjct: 309 IIKDA-VVEDSGKYLCVVNNSVGG---ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 364
Query: 591 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-----S 645
T P W +D + + L ++++ D G Y C V+ +
Sbjct: 365 CQYTGNPIKTVSWMKD---------GKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESA 415
Query: 646 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN 705
+ S + G F V + FQ+ E + G V L+CVA G P P +
Sbjct: 416 EASAELKLGGRFDPPVIRQA-FQE------------ETMEPGPSVFLKCVAGGNPTPEIS 462
Query: 706 WTRRGSPLPRNAYFENFNRI---------LTIPNVKVEDQGEYICRASNDRSALESSVTI 756
W G + N ++ + L I +V D G Y C A + E S +
Sbjct: 463 WELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Query: 757 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 798
++ P + + K + L TC G P + W R+
Sbjct: 523 NVYGLP-YIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 126/321 (39%), Gaps = 33/321 (10%)
Query: 487 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLI--IN-DPRQVEDRG 543
L C AGG P P W + + +AN D ++ G+++ +N D G
Sbjct: 449 LKCVAGGNPTPEISW----ELDGKKIANN-DRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 544 SYHCKASNKFGSIISESVQL-AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYY 602
Y C A +K G + S +L +G +++ + + + P YP +
Sbjct: 504 LYKCIAKSKVG-VAEHSAKLNVYGLPYIRQMEKKAIVAGETL---IVTCPVAGYPIDSIV 559
Query: 603 WARDYFPNFVEEDKRVFVSYDGALYFSALEQ-IDAGNYSCNVQSKVSDTGRNGPFFPLKV 661
W RD + ++VF +G L +E+ D Y+C +++ + R L+V
Sbjct: 560 WERDNRALPINRKQKVF--PNGTLIIENVERNSDQATYTCVAKNQEGYSARGS----LEV 613
Query: 662 FPHSNFQQLKFPNNFPKTFPEAP-KAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRN--- 716
Q + P P F E P + G + L C G +P + +WT G + +
Sbjct: 614 ------QVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGI 667
Query: 717 --AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMD 774
+ +LTI V+ G + C A N + + +++ P + + TDK
Sbjct: 668 TTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFA 727
Query: 775 NQADLTWTCEAFGVPDVTYSW 795
+D C+A G P +W
Sbjct: 728 QGSDAKVECKADGFPKPQVTW 748
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 694 CVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
C G P+ + +W + G + + +L I +VK ED+G Y C NDR + E+S
Sbjct: 365 CQYTGNPIKTVSWMKDGKAIGHS------ESVLRIESVKKEDKGMYQCFVRNDRESAEAS 418
Query: 754 VTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ + P ++ M+ + C A G P SW +G+
Sbjct: 419 AELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGK 468
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P +I +PTD F +D + C A G+P P W K V D D
Sbjct: 715 PRWILEPTDKAFAQG-----SDAKVECKADGFPKPQVTWKKA--VGD-TPGEYKDLKKSD 766
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 292
+ G L + D Q + G Y C+A N GS +S + ++
Sbjct: 767 NIRVEEGTLHV-DNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 106 bits (264), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 95/199 (47%), Gaps = 6/199 (3%)
Query: 566 GFIGEFNLKRAPEIG-NQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVS-Y 622
G++ F + PE+ + G + CDPP ++P ++Y W + FP F+ DKR FVS
Sbjct: 5 GYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
+G LY + +E D GNYSC V S F PL P + +P + F +
Sbjct: 65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTK--PYPADIVVQFKD 122
Query: 683 A-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 741
G V LEC A G PVP W + P+P A +L I N+++ED+G Y C
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYEC 182
Query: 742 RASNDRSALESSVTISIQA 760
A N R + I +QA
Sbjct: 183 EAENIRGKDKHQARIYVQA 201
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 81/173 (46%), Gaps = 6/173 (3%)
Query: 293 GFIGEFNLKRAPEIG-NQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVS-Y 349
G++ F + PE+ + G + CDPP ++P ++Y W + FP F+ DKR FVS
Sbjct: 5 GYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64
Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
+G LY + +E D GNYSC V S F PL P + +P + F +
Sbjct: 65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTK--PYPADIVVQFKD 122
Query: 410 A-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR 461
G V LEC A G PVP W + P+P A +L I N+++
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLE 175
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 196 PTDVVFDLSKRSIL--NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SDKRFT 252
P D+V L ++TL C+A G P P W K +++P+ S +
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK-----------VLEPMPSTAEIS 161
Query: 253 LSGGNLIINDPRQVEDRGSYHCKASNKFG 281
SG L I + Q+ED G Y C+A N G
Sbjct: 162 TSGAVLKIFN-IQLEDEGIYECEAENIRG 189
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 152/386 (39%), Gaps = 57/386 (14%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
+GP F+K+PT+ + D S + + C A G P P W + D + +
Sbjct: 2 KGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 50
Query: 521 DKRFTLSGGNLII-----NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 575
R S G L+ D RQ Y C A N+FGSIIS V + I + +
Sbjct: 51 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVIQSYESEA 110
Query: 576 APEIGNQNWGKAMFCDPPT---NYPGVNYYW---ARDYFPN-FVEEDKRVFVSYDGALYF 628
E + M C+ P+ ++ V+ + R+Y+PN E D + V G L+
Sbjct: 111 DNEYVIRGNSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGELHI 170
Query: 629 SALEQIDA-GNYSCNVQSKVSDTGR-------------NGPFFPLKVFPHSNFQQLKFPN 674
+ D +Y C + +++ R G P KV P Q +
Sbjct: 171 REVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRP-KVNPQDKHQFIDV-- 227
Query: 675 NFPKTFPEAPKAGDKVRLECVAFGYPVPSYNW------TRRGSPLPRNAYFENFNRILTI 728
+ L C+A YP PS+ W T R + N + + L I
Sbjct: 228 ----------ELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 277
Query: 729 PNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV 788
+ VED G+Y+C +N +++ A + I + +D +TC+ G
Sbjct: 278 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGN 337
Query: 789 PDVTYSWFRNGE-LGHQMTDLLLKAV 813
P T SW ++G+ +GH + L +++V
Sbjct: 338 PIKTVSWMKDGKAIGHSESVLRIESV 363
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 95/432 (21%), Positives = 151/432 (34%), Gaps = 95/432 (21%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+GP F+K+PT+ + D S + + C A G P P W + D + +
Sbjct: 2 KGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 50
Query: 248 DKRFTLSGGNLII-----NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
R S G L+ D RQ Y C A N+FGSIIS V + I + +
Sbjct: 51 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVIQSYESEA 110
Query: 303 APEIGNQNWGKAMFCDPPT---NYPGVNYYW---ARDYFPN-FVEEDKRVFVSYDGALYF 355
E + M C+ P+ ++ V+ + R+Y+PN E D + V G L+
Sbjct: 111 DNEYVIRGNSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKYLVLPSGELHI 170
Query: 356 SALEQIDA-GNYSCNVQSKVSDTGR-------------NGPFFPLKVFPHSNFQQLKFPN 401
+ D +Y C + +++ R G P KV P Q +
Sbjct: 171 REVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRP-KVNPQDKHQFIDV-- 227
Query: 402 NFPKTFPEAPKAGDKVRLECVAFGYPVPSYNW-------TRR-------------GSPLP 441
+ L C+A YP PS+ W TR+ G+ +
Sbjct: 228 ----------ELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 277
Query: 442 RNAYFENFNRILTIPNVKMRGPYF-----IKQPTDVVFDLSKRSI--LNDITLSCYAGGY 494
++A E+ + L + N + G + P D +++ +C G
Sbjct: 278 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGN 337
Query: 495 PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 554
P + W K+ K S L I ++ ED+G Y C N
Sbjct: 338 PIKTVSWMKD----------------GKAIGHSESVLRIESVKK-EDKGMYQCFVRNDRE 380
Query: 555 SIISESVQLAFG 566
S S +L G
Sbjct: 381 S-AEASAELKLG 391
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 694 CVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
C G P+ + +W + G + + +L I +VK ED+G Y C NDR + E+S
Sbjct: 332 CQYTGNPIKTVSWMKDGKAIGHS------ESVLRIESVKKEDKGMYQCFVRNDRESAEAS 385
Query: 754 VTISI 758
+ +
Sbjct: 386 AELKL 390
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 148/382 (38%), Gaps = 52/382 (13%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
+GP F+K+PT+ + D S + + C A G P P W + D + +
Sbjct: 2 KGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 50
Query: 521 DKRFTLSGGNLII-----NDPRQVEDRGSYHCKASNKFGSIISESVQL--AFGFIGEFNL 573
R S G L+ D RQ Y C A N+FGSIIS V + E ++
Sbjct: 51 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 110
Query: 574 KRAPEI-GNQNWGKAMFCDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYDGALYF 628
+ I GN K + ++ V W D YFP E D + V G L+
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPG-AEYDGKYLVLPSGELHI 168
Query: 629 SALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 687
+ D +Y C + +++ R + +L + P P
Sbjct: 169 REVGPEDGYKSYQCRTKHRLTGETRLS----------ATKGRLVITEPISSSAPRTPALV 218
Query: 688 DK---------VRLECVAFGYPVPSYNW------TRRGSPLPRNAYFENFNRILTIPNVK 732
K + L C A G+P PS+ W T R + N + + L I +
Sbjct: 219 QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 278
Query: 733 VEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 792
VED G+Y+C +N +++ A + I + +D +TC+ G P T
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 338
Query: 793 YSWFRNGE-LGHQMTDLLLKAV 813
SW ++G+ +GH + L +++V
Sbjct: 339 VSWMKDGKAIGHSESVLRIESV 360
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 25/186 (13%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
PR P +++P +++ + + I+L C A G+P PS+ W+K R A ++
Sbjct: 212 PRTPALVQKPLELM-------VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL--- 261
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
+ R G LII D VED G Y C +N G ESV+ + K P
Sbjct: 262 -NDRVKQVSGTLIIKDA-VVEDSGKYLCVVNNSVG---GESVETVLTVTAPLSAKIDPPT 316
Query: 307 GNQNWGK-AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 365
++G+ A+F T P W + D + + L ++++ D G
Sbjct: 317 QTVDFGRPAVFTCQYTGNPIKTVSWMK---------DGKAIGHSESVLRIESVKKEDKGM 367
Query: 366 YSCNVQ 371
Y C V+
Sbjct: 368 YQCFVR 373
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/428 (21%), Positives = 147/428 (34%), Gaps = 90/428 (21%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+GP F+K+PT+ + D S + + C A G P P W + D + +
Sbjct: 2 KGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 50
Query: 248 DKRFTLSGGNLII-----NDPRQVEDRGSYHCKASNKFGSIISESVQL--AFGFIGEFNL 300
R S G L+ D RQ Y C A N+FGSIIS V + E ++
Sbjct: 51 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 110
Query: 301 KRAPEI-GNQNWGKAMFCDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYDGALYF 355
+ I GN K + ++ V W D YFP E D + V G L+
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPG-AEYDGKYLVLPSGELHI 168
Query: 356 SALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 414
+ D +Y C + +++ R + +L + P P
Sbjct: 169 REVGPEDGYKSYQCRTKHRLTGETRLS----------ATKGRLVITEPISSSAPRTPALV 218
Query: 415 DK---------VRLECVAFGYPVPSYNW-------TRR-------------GSPLPRNAY 445
K + L C A G+P PS+ W TR+ G+ + ++A
Sbjct: 219 QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 278
Query: 446 FENFNRILTIPNVKMRGPYF-----IKQPTDVVFDLSKRSI--LNDITLSCYAGGYPNPS 498
E+ + L + N + G + P D +++ +C G P +
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 338
Query: 499 YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 558
W K+ K S L I ++ ED+G Y C N S
Sbjct: 339 VSWMKD----------------GKAIGHSESVLRIESVKK-EDKGMYQCFVRNDRES-AE 380
Query: 559 ESVQLAFG 566
S +L G
Sbjct: 381 ASAELKLG 388
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 694 CVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
C G P+ + +W + G + + +L I +VK ED+G Y C NDR + E+S
Sbjct: 329 CQYTGNPIKTVSWMKDGKAIGHS------ESVLRIESVKKEDKGMYQCFVRNDRESAEAS 382
Query: 754 VTISI 758
+ +
Sbjct: 383 AELKL 387
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 148/382 (38%), Gaps = 52/382 (13%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
+GP F+K+PT+ + D S + + C A G P P W + D + +
Sbjct: 8 KGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 56
Query: 521 DKRFTLSGGNLII-----NDPRQVEDRGSYHCKASNKFGSIISESVQL--AFGFIGEFNL 573
R S G L+ D RQ Y C A N+FGSIIS V + E ++
Sbjct: 57 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 116
Query: 574 KRAPEI-GNQNWGKAMFCDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYDGALYF 628
+ I GN K + ++ V W D YFP E D + V G L+
Sbjct: 117 NKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPG-AEYDGKYLVLPSGELHI 174
Query: 629 SALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 687
+ D +Y C + +++ R + +L + P P
Sbjct: 175 REVGPEDGYKSYQCRTKHRLTGETRLS----------ATKGRLVITEPISSSAPRTPALV 224
Query: 688 DK---------VRLECVAFGYPVPSYNW------TRRGSPLPRNAYFENFNRILTIPNVK 732
K + L C A G+P PS+ W T R + N + + L I +
Sbjct: 225 QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 284
Query: 733 VEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 792
VED G+Y+C +N +++ A + I + +D +TC+ G P T
Sbjct: 285 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 344
Query: 793 YSWFRNGE-LGHQMTDLLLKAV 813
SW ++G+ +GH + L +++V
Sbjct: 345 VSWMKDGKAIGHSESVLRIESV 366
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 25/186 (13%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
PR P +++P +++ + + I+L C A G+P PS+ W+K R A ++
Sbjct: 218 PRTPALVQKPLELM-------VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL--- 267
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
+ R G LII D VED G Y C +N G ESV+ + K P
Sbjct: 268 -NDRVKQVSGTLIIKDA-VVEDSGKYLCVVNNSVG---GESVETVLTVTAPLSAKIDPPT 322
Query: 307 GNQNWGK-AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 365
++G+ A+F T P W + D + + L ++++ D G
Sbjct: 323 QTVDFGRPAVFTCQYTGNPIKTVSWMK---------DGKAIGHSESVLRIESVKKEDKGM 373
Query: 366 YSCNVQ 371
Y C V+
Sbjct: 374 YQCFVR 379
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/428 (21%), Positives = 147/428 (34%), Gaps = 90/428 (21%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+GP F+K+PT+ + D S + + C A G P P W + D + +
Sbjct: 8 KGPVFLKEPTNRI-DFSNST---GAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 56
Query: 248 DKRFTLSGGNLII-----NDPRQVEDRGSYHCKASNKFGSIISESVQL--AFGFIGEFNL 300
R S G L+ D RQ Y C A N+FGSIIS V + E ++
Sbjct: 57 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 116
Query: 301 KRAPEI-GNQNWGKAMFCDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYDGALYF 355
+ I GN K + ++ V W D YFP E D + V G L+
Sbjct: 117 NKEHVIRGNSAVIKCLIPSFVADFVEV-VSWHTDEEENYFPG-AEYDGKYLVLPSGELHI 174
Query: 356 SALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 414
+ D +Y C + +++ R + +L + P P
Sbjct: 175 REVGPEDGYKSYQCRTKHRLTGETRLS----------ATKGRLVITEPISSSAPRTPALV 224
Query: 415 DK---------VRLECVAFGYPVPSYNW-------TRR-------------GSPLPRNAY 445
K + L C A G+P PS+ W TR+ G+ + ++A
Sbjct: 225 QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 284
Query: 446 FENFNRILTIPNVKMRGPYF-----IKQPTDVVFDLSKRSI--LNDITLSCYAGGYPNPS 498
E+ + L + N + G + P D +++ +C G P +
Sbjct: 285 VEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKT 344
Query: 499 YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 558
W K+ K S L I ++ ED+G Y C N S
Sbjct: 345 VSWMKD----------------GKAIGHSESVLRIESVKK-EDKGMYQCFVRNDRES-AE 386
Query: 559 ESVQLAFG 566
S +L G
Sbjct: 387 ASAELKLG 394
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 694 CVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
C G P+ + +W + G + + +L I +VK ED+G Y C NDR + E+S
Sbjct: 335 CQYTGNPIKTVSWMKDGKAIGHS------ESVLRIESVKKEDKGMYQCFVRNDRESAEAS 388
Query: 754 VTISI 758
+ +
Sbjct: 389 AELKL 393
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 144/365 (39%), Gaps = 62/365 (16%)
Query: 464 YFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
+F+ +P+D V + R ++ L+C A P +W K+ + L + D+
Sbjct: 23 HFVSEPSDAV---TMRG--GNVLLNCSAESDRGVPVIKWKKDGLI-------LALGMDDR 70
Query: 523 RFTLSGGNLIINDPRQVE----DRGSYHCKAS-NKFGSIISESVQLAFG----------- 566
+ L G+L+I + D G Y C+AS GSIIS + ++
Sbjct: 71 KQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTES 130
Query: 567 ---FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSY 622
F+G+ L + IG+ P +W ++ N + D RV V
Sbjct: 131 ITAFMGDTVLLKCEVIGD---------------PMPTIHWQKNQQDLNPIPGDSRVVVLP 175
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP----HSNFQQLKFPNNFPK 678
GAL S L+ D+G Y C+ ++ S R G +++ H L+ P+N
Sbjct: 176 SGALQISRLQPGDSGVYRCSARNPAST--RTGNEAEVRILSDPGLHRQLYFLQRPSNVIA 233
Query: 679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS--PLPRNAYFENFNRILTIPNVKVEDQ 736
G LEC GYP PS+ W R L Y L I NV +D
Sbjct: 234 I------EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDS 287
Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
G Y C + + +S +++ P F ++ + D+ + C G P T +W
Sbjct: 288 GTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM 347
Query: 797 RNGEL 801
+NG++
Sbjct: 348 KNGDV 352
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 120/310 (38%), Gaps = 35/310 (11%)
Query: 458 VKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 517
V + GP T+ + ++L L C G P P+ W K QD ++
Sbjct: 116 VMVAGPLRFLSQTESITAFMGDTVL----LKCEVIGDPMPTIHWQKNQ--QD------LN 163
Query: 518 PL-SDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF----GFIGE- 570
P+ D R L G L I+ Q D G Y C A N + ++ G +
Sbjct: 164 PIPGDSRVVVLPSGALQISR-LQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQL 222
Query: 571 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA-LYFS 629
+ L+R + A+ + YP ++ W R ++ + + G+ L S
Sbjct: 223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGE--EVIQLRSKKYSLLGGSNLLIS 280
Query: 630 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 689
+ D+G Y+C V K + + L V F L P+N A ++ D
Sbjct: 281 NVTDDDSGTYTCVVTYKNENISASAE---LTVLVPPWF--LNHPSNL-----YAYESMD- 329
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI-LTIPNVKVEDQGEYICRASNDRS 748
+ EC G PVP+ NW + G + + YF+ L I V D+G Y C A N+
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAG 389
Query: 749 ALESSVTISI 758
+SS + +
Sbjct: 390 NAQSSAQLIV 399
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 19/107 (17%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK-EDYVQDRLVANLIDPL 246
R YF+++P++V+ K D L C GYP PS+ W + E+ +Q L
Sbjct: 220 RQLYFLQRPSNVIAIEGK-----DAVLECCVSGYPPPSFTWLRGEEVIQ----------L 264
Query: 247 SDKRFTLSGG-NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 292
K+++L GG NL+I++ +D G+Y C + K + IS S +L
Sbjct: 265 RSKKYSLLGGSNLLISNVTD-DDSGTYTCVVTYKNEN-ISASAELTV 309
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 96/246 (39%), Gaps = 30/246 (12%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SDKRFT-LSGGNLIINDPRQVE 267
+ + L C G P P+ W K QD ++P+ D R L G L I+ Q
Sbjct: 137 DTVLLKCEVIGDPMPTIHWQKNQ--QD------LNPIPGDSRVVVLPSGALQISR-LQPG 187
Query: 268 DRGSYHCKASNKFGSIISESVQLAF----GFIGE-FNLKRAPEIGNQNWGKAMFCDPPTN 322
D G Y C A N + ++ G + + L+R + A+ +
Sbjct: 188 DSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSG 247
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGA-LYFSALEQIDAGNYSCNVQSKVSDTGRNG 381
YP ++ W R ++ + + G+ L S + D+G Y+C V K + +
Sbjct: 248 YPPPSFTWLRGE--EVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASA 305
Query: 382 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP 441
L V F L P+N A ++ D + EC G PVP+ NW + G +
Sbjct: 306 E---LTVLVPPWF--LNHPSNL-----YAYESMD-IEFECAVSGKPVPTVNWMKNGDVVI 354
Query: 442 RNAYFE 447
+ YF+
Sbjct: 355 PSDYFQ 360
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F+ P+++ S DI C G P P+ W K +++ P SD
Sbjct: 313 PWFLNHPSNLYAYESM-----DIEFECAVSGKPVPTVNWMKN--------GDVVIP-SDY 358
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ G NL I + D G Y C A N+ G+ S S QL
Sbjct: 359 FQIVGGSNLRILGVVK-SDEGFYQCVAENEAGNAQS-SAQL 397
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ P+D++ + + TL+C A G P P+ EW+K +R+ + DP S
Sbjct: 10 PRIVEHPSDLIVSKGEPA-----TLNCKAEGRPTPTIEWYKGG---ERVETDKDDPRS-H 60
Query: 250 RFTLSGGNL----IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
R L G+L I++ + D G Y C A N G +S L + + + ++ P
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRD-DFRQNPS 119
Query: 306 IGNQNWGK--AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA 363
G+ M C PP +P W +D P ++D+R+ + G L + + DA
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSP-LDDKDERITIR-GGKLMITYTRKSDA 177
Query: 364 GNYSC 368
G Y C
Sbjct: 178 GKYVC 182
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P ++ P+D++ + + TL+C A G P P+ EW+K +R+ + DP S
Sbjct: 10 PRIVEHPSDLIVSKGEPA-----TLNCKAEGRPTPTIEWYKGG---ERVETDKDDPRS-H 60
Query: 523 RFTLSGGNL----IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 578
R L G+L I++ + D G Y C A N G +S L + + + ++ P
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRD-DFRQNPS 119
Query: 579 IGNQNWGK--AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA 636
G+ M C PP +P W +D P ++D+R+ + G L + + DA
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSP-LDDKDERITIR-GGKLMITYTRKSDA 177
Query: 637 GNYSC 641
G Y C
Sbjct: 178 GKYVC 182
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 687 GDKVRLECVA-FGYPVPSYNWTRRGSPL-PRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
G+ +EC G+P P+ +W + GSPL ++ L I + D G+Y+C +
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGT 185
Query: 745 NDRSALESSVT-ISIQAEPNF 764
N ES V +++ P+F
Sbjct: 186 NMVGERESEVAELTVLERPSF 206
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 60/156 (38%), Gaps = 43/156 (27%)
Query: 675 NFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSP--------------LPR 715
+FP E P G+ L C A G P P+ W + G LP
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 716 NAYFENFNRILTIPNVKVEDQGEYICRASN---DRSALESSVTISIQAEPNFTIPLTDKH 772
+ F F RI+ + D+G Y+C A N + + ++S+ ++I L D
Sbjct: 67 GSLF--FLRIVHGRKSR-PDEGVYVCVARNYLGEAVSHDASLEVAI---------LRDDF 114
Query: 773 MDNQADL--------TWTCE-AFGVPDVTYSWFRNG 799
N +D+ C+ G P+ T SW ++G
Sbjct: 115 RQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDG 150
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 33/204 (16%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+ P I+ PTD+V ++ + LN C G P P+ EWFK+ +P+S
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLN-----CKVEGKPEPTIEWFKDG-----------EPVS 51
Query: 248 -----DKRFTLSGGNLI---INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 299
R G L ++ +D G Y C A N+ G +S L + + +
Sbjct: 52 TNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-D 110
Query: 300 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDG 351
+ P+ G+ C PP P W +D P RV + G
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 352 ALYFSALEQIDAGNYSCNVQSKVS 375
L S +E ID GNY C Q+ V
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVG 194
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 33/204 (16%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
+ P I+ PTD+V ++ + LN C G P P+ EWFK+ +P+S
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLN-----CKVEGKPEPTIEWFKDG-----------EPVS 51
Query: 521 -----DKRFTLSGGNLI---INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 572
R G L ++ +D G Y C A N+ G +S L + + +
Sbjct: 52 TNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-D 110
Query: 573 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDG 624
+ P+ G+ C PP P W +D P RV + G
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 625 ALYFSALEQIDAGNYSCNVQSKVS 648
L S +E ID GNY C Q+ V
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVG 194
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 28/168 (16%)
Query: 603 WARDYFPNFVEEDKRVFVSY-DGALYF----SALEQIDAGNYSCNVQSKVSDTGRNGPFF 657
W +D P E K V + DGAL+F ++ D G Y C +++V
Sbjct: 43 WFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA------- 95
Query: 658 PLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVA-FGYPVPSYNWTRRGSPLP 714
V H++ Q ++F + P+ + G+ LEC G P P+ W + G PL
Sbjct: 96 ---VSRHASLQIAVLRDDF-RVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD 151
Query: 715 --RNAYFENFNRI-------LTIPNVKVEDQGEYICRASNDRSALESS 753
+ F +R+ L I NV+ D+G Y C A N ESS
Sbjct: 152 DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI----------LTIPNVKVE 734
K + L C G P P+ W + G P+ N + +R+ T+ K +
Sbjct: 22 KKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE--KKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 735 DQGEYICRASN---DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV 791
D GEY C A N + +S+ I++ + P + + L G+P+
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP 139
Query: 792 TYSWFRNG 799
T W ++G
Sbjct: 140 TLIWIKDG 147
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 33/204 (16%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+ P I+ PTD+V ++ + LN C G P P+ EWFK+ +P+S
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLN-----CKVEGKPEPTIEWFKDG-----------EPVS 51
Query: 248 -----DKRFTLSGGNLI---INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 299
R G L ++ +D G Y C A N+ G +S L + + +
Sbjct: 52 TNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-D 110
Query: 300 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDG 351
+ P+ G+ C PP P W +D P RV + G
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 352 ALYFSALEQIDAGNYSCNVQSKVS 375
L S +E ID GNY C Q+ V
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVG 194
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 78/204 (38%), Gaps = 33/204 (16%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
+ P I+ PTD+V ++ + LN C G P P+ EWFK+ +P+S
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLN-----CKVEGKPEPTIEWFKDG-----------EPVS 51
Query: 521 -----DKRFTLSGGNLI---INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 572
R G L ++ +D G Y C A N+ G +S L + + +
Sbjct: 52 TNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-D 110
Query: 573 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDG 624
+ P+ G+ C PP P W +D P RV + G
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 625 ALYFSALEQIDAGNYSCNVQSKVS 648
L S +E ID GNY C Q+ V
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVG 194
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 28/168 (16%)
Query: 603 WARDYFPNFVEEDKRVFVSY-DGALYF----SALEQIDAGNYSCNVQSKVSDTGRNGPFF 657
W +D P E K V + DGAL+F ++ D G Y C +++V
Sbjct: 43 WFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA------- 95
Query: 658 PLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVA-FGYPVPSYNWTRRGSPLP 714
V H++ Q ++F + P+ + G+ LEC G P P+ W + G PL
Sbjct: 96 ---VSRHASLQIAVLRDDF-RVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD 151
Query: 715 --RNAYFENFNRI-------LTIPNVKVEDQGEYICRASNDRSALESS 753
+ F +R+ L I NV+ D+G Y C A N ESS
Sbjct: 152 DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI----------LTIPNVKVE 734
K + L C G P P+ W + G P+ N + +R+ T+ K +
Sbjct: 22 KKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE--KKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 735 DQGEYICRASN---DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV 791
D GEY C A N + +S+ I++ + P + + L G+P+
Sbjct: 80 DGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP 139
Query: 792 TYSWFRNG 799
T W ++G
Sbjct: 140 TLIWIKDG 147
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 89/233 (38%), Gaps = 28/233 (12%)
Query: 539 VEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG 598
++D G Y C + + G+ +V + F P+ + + CD ++ P
Sbjct: 71 IDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130
Query: 599 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP 658
W +++D R V + L +++ D G Y C GR
Sbjct: 131 -TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE--------GR------ 175
Query: 659 LKVFPHSNFQQLKFPNNFPKTFPE-------APKAGDKVRLECVAFGYPVPSYNWTRRGS 711
+ NF+ ++ N P T G V L C A G+P P+ +WT+ G
Sbjct: 176 ILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGE 235
Query: 712 PLP------RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
P+ F + + LTI NV D+ EY+C A N ++S+ + +
Sbjct: 236 PIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 75/206 (36%), Gaps = 28/206 (13%)
Query: 266 VEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG 325
++D G Y C + + G+ +V + F P+ + + CD ++ P
Sbjct: 71 IDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130
Query: 326 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP 385
W +++D R V + L +++ D G Y C GR
Sbjct: 131 -TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE--------GR------ 175
Query: 386 LKVFPHSNFQQLKFPNNFPKTFPE-------APKAGDKVRLECVAFGYPVPSYNWTRRGS 438
+ NF+ ++ N P T G V L C A G+P P+ +WT+ G
Sbjct: 176 ILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGE 235
Query: 439 PLP------RNAYFENFNRILTIPNV 458
P+ F + + LTI NV
Sbjct: 236 PIENEEEDDEKHIFSDDSSELTIRNV 261
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 17/173 (9%)
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
DAG Y C V ++ D ++ +K+F F+ P F K G+ + C
Sbjct: 73 DAGIYKCVVTAE--DGTQSEATVNVKIFQKLMFKNAPTPQEF--------KEGEDAVIVC 122
Query: 695 VAFGYPVPSYNWTRRGSP--LPRNAYFENF-NRILTIPNVKVEDQGEYICR----ASNDR 747
P+ W +G L ++ F N L I +K D+G Y C A +
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI 182
Query: 748 SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ + V +++ + + + +T C+A G P+ T SW ++GE
Sbjct: 183 NFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGE 235
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 86/226 (38%), Gaps = 53/226 (23%)
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
DAG Y C V ++ D ++ +K+F F+ P F K G+ + C
Sbjct: 73 DAGIYKCVVTAE--DGTQSEATVNVKIFQKLMFKNAPTPQEF--------KEGEDAVIVC 122
Query: 422 VAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPN--VKMRGPYFIKQPT--------- 470
P+ W +G R+ + R + + N +++RG + T
Sbjct: 123 DVVSSLPPTIIWKHKG----RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILA 178
Query: 471 ---------DVVFDL-----SKRSILN-------DITLSCYAGGYPNPSYEWFKE-DYVQ 508
V+ ++ +++SI+N +TL C A G+P P+ W K+ + ++
Sbjct: 179 RGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIE 238
Query: 509 DRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 554
+ + SD L+ N+ N D Y C A NK G
Sbjct: 239 NEEEDDEKHIFSDDSSELTIRNVDKN------DEAEYVCIAENKAG 278
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 204 SKRSILN-------DITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLSG 255
+++SI+N +TL C A G+P P+ W K+ + +++ + SD L+
Sbjct: 199 ARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTI 258
Query: 256 GNLIINDPRQVEDRGSYHCKASNKFG 281
N+ N D Y C A NK G
Sbjct: 259 RNVDKN------DEAEYVCIAENKAG 278
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 103/496 (20%), Positives = 170/496 (34%), Gaps = 83/496 (16%)
Query: 351 GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA 410
+L + ++ D G Y+C ++ V + ++ K P +F + +
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLV---------IKERKLPPSFARKLKDV 111
Query: 411 PKA-GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN--FNRILTIPNVKMRG----- 462
+ G V EC G +W + G L +A + + + T+ ++
Sbjct: 112 HETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQ 171
Query: 463 --------------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN 496
P+F +P V L + T C+ G
Sbjct: 172 YNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESG-----TFKCHVTGTAP 226
Query: 497 PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE-DRGSYHCKASNKFGS 555
W K++ I P + + TL + + + D G Y C ASN G
Sbjct: 227 IKITWAKDN--------REIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 278
Query: 556 IISESVQLAFGFIGEFNLKRAP-EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE 614
S S QL F K P I Q+ C + P + W +D ++E
Sbjct: 279 D-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGS-PEIKVLWYKD--ETEIQE 334
Query: 615 DKR---VFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 671
+ FV L L D+G+Y+C + + ++K
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL------------KVK 382
Query: 672 FPNNFPKT-FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRIL 726
P F K P G V LEC G P +W + L + ENF +
Sbjct: 383 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 442
Query: 727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF 786
I NV D GEY C+ASND + +I+++A P F L+D ++
Sbjct: 443 HILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIE 502
Query: 787 GVPDVTYSWFRN-GEL 801
G ++ +WF++ GE+
Sbjct: 503 GAEPISVAWFKDKGEI 518
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/364 (23%), Positives = 135/364 (37%), Gaps = 63/364 (17%)
Query: 460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
M PYFI +P + V + +I ITL C G P W+KE + + R P
Sbjct: 3 MEPPYFI-EPLEHV----EAAIGEPITLQCKVDGTPEIRIAWYKE-HTKLRSA-----PA 51
Query: 520 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL----KR 575
+F + +L+IN D G Y CKA N G++ S +V + I E L R
Sbjct: 52 YKMQFKNNVASLVINKVDH-SDVGEYTCKAENSVGAVASSAVLV----IKERKLPPSFAR 106
Query: 576 APEIGNQNWG--KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV---FVSYDGALYFSA 630
+ ++ G A C + P + W +D +++D + F+ L
Sbjct: 107 KLKDVHETLGFPVAFECRINGSEP-LQVSWYKD--GELLKDDANLQTSFIHNVATLQILQ 163
Query: 631 LEQIDAGNYSCNVQSKVSDTGRNG----------PFFPLKVFPHSNFQQLKFPNNFPKTF 680
+Q G Y+C+ + + + PFF LK P S L
Sbjct: 164 TDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLK--PVSVDLAL---------- 211
Query: 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP-----RNAYFENFNRILTIPNVKVED 735
G+ +C G W + + + EN LT+ V D
Sbjct: 212 ------GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN-TATLTVLKVTKGD 264
Query: 736 QGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT-WTCEAFGVPDVTYS 794
G+Y C ASN S + +Q P F L + Q + T + C+ G P++
Sbjct: 265 AGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVL 324
Query: 795 WFRN 798
W+++
Sbjct: 325 WYKD 328
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYIC 741
G+ + L+C G P W + + L R+A F+N L I V D GEY C
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKL-RSAPAYKMQFKNNVASLVINKVDHSDVGEYTC 78
Query: 742 RASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 798
+A N A+ SS + I+ P+F L D H + + C G + SW+++
Sbjct: 79 KAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKD 138
Query: 799 GEL 801
GEL
Sbjct: 139 GEL 141
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
PYFI +P + V + +I ITL C G P W+KE + + R P
Sbjct: 6 PYFI-EPLEHV----EAAIGEPITLQCKVDGTPEIRIAWYKE-HTKLRSA-----PAYKM 54
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 288
+F + +L+IN D G Y CKA N G++ S +V
Sbjct: 55 QFKNNVASLVINKVDH-SDVGEYTCKAENSVGAVASSAV 92
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 113/521 (21%), Positives = 166/521 (31%), Gaps = 140/521 (26%)
Query: 212 ITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+ C G W+K+ + ++D ANL TL ++ D V G
Sbjct: 119 VAFECRINGSEPLQVSWYKDGELLKDD--ANLQTSFIHNVATL---QILQTDQSHV---G 170
Query: 271 SYHCKASNKFGSIISE-------------------SVQLAFGFIGEFNLK---RAPEIGN 308
Y+C ASN G+ S SV LA G G F AP
Sbjct: 171 QYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAP--IK 228
Query: 309 QNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
W K D PG NY K V L + + DAG Y+C
Sbjct: 229 ITWAK----DNREIRPGGNY--------------KMTLVENTATLTVLKVTKGDAGQYTC 270
Query: 369 ---NVQSKVSDTGRNG----PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
NV K S + + G P F K+ P +Q + R EC
Sbjct: 271 YASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQ-----------------DEHTRYEC 313
Query: 422 VAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKMRG--------------- 462
G P W + + + ++ F +L + N+ +
Sbjct: 314 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 373
Query: 463 -----------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRL 511
P F K+P V + K + D+ L C G P W K+ + L
Sbjct: 374 SSSTSLKVKEPPVFRKKPHPV--ETLKGA---DVHLECELQGTPPFQVSWHKD---KREL 425
Query: 512 VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF 571
+ + + F S L ++ D G Y CKASN GS +G
Sbjct: 426 RSGKKYKIMSENFLTSIHILNVDSA----DIGEYQCKASNDVGSDTC---------VGSI 472
Query: 572 NLKRAP-------EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD- 623
LK P +I + ++ W +D V E +++SY
Sbjct: 473 TLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDK-GEIVRESDNIWISYSE 531
Query: 624 --GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 662
L FS E +AG Y+C ++ ++ G F L V
Sbjct: 532 NIATLQFSRAEPANAGKYTCQIK---NEAGTQECFATLSVL 569
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 78/215 (36%), Gaps = 35/215 (16%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
K+ P F K+P V + K + D+ L C G P W K+ + L +
Sbjct: 380 KVKEPPVFRKKPHPV--ETLKGA---DVHLECELQGTPPFQVSWHKD---KRELRSGKKY 431
Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP 304
+ + F S L ++ D G Y CKASN GS +G LK P
Sbjct: 432 KIMSENFLTSIHILNVDSA----DIGEYQCKASNDVGSDTC---------VGSITLKAPP 478
Query: 305 -------EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD---GALY 354
+I + ++ W +D V E +++SY L
Sbjct: 479 RFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDK-GEIVRESDNIWISYSENIATLQ 537
Query: 355 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 389
FS E +AG Y+C ++ ++ G F L V
Sbjct: 538 FSRAEPANAGKYTCQIK---NEAGTQECFATLSVL 569
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 114/313 (36%), Gaps = 39/313 (12%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P FIK+P D + + + C A G P P W K+ + I+
Sbjct: 7 PRFIKEPKDQIGVSGGVA-----SFVCQATGDPKPRVTWNKKGKKVNSQRFETIE----- 56
Query: 523 RFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNLK 574
F S G ++ P R D Y C A N G I + QL GF N+
Sbjct: 57 -FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF---PNID 112
Query: 575 RAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSAL 631
P++ + M C N P W +D+ P + + R+ GAL +
Sbjct: 113 MGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESS 171
Query: 632 EQIDAGNYSCNVQSKVSDTGRNGPFF--PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 689
E+ D G Y C T G + P ++ +F + P + P G
Sbjct: 172 EETDQGKYECVA------TNSAGVRYSSPANLYVRVQNVAPRF-SILPMSHEIMP--GGN 222
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
V + CVA G P+P W + L +L + +VK D Y C A +
Sbjct: 223 VNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGV 280
Query: 750 LESSVTISIQAEP 762
+E+ I++++ P
Sbjct: 281 IEAVAQITVKSLP 293
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 100/283 (35%), Gaps = 37/283 (13%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P FIK+P D + + + C A G P P W K+ + I+
Sbjct: 7 PRFIKEPKDQIGVSGGVA-----SFVCQATGDPKPRVTWNKKGKKVNSQRFETIE----- 56
Query: 250 RFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNLK 301
F S G ++ P R D Y C A N G I + QL GF N+
Sbjct: 57 -FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF---PNID 112
Query: 302 RAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSAL 358
P++ + M C N P W +D+ P + + R+ GAL +
Sbjct: 113 MGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESS 171
Query: 359 EQIDAGNYSCNVQSKVSDTGRNGPFF--PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 416
E+ D G Y C T G + P ++ +F + P + P G
Sbjct: 172 EETDQGKYECVA------TNSAGVRYSSPANLYVRVQNVAPRF-SILPMSHEIMP--GGN 222
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK 459
V + CVA G P+P W + L +L + +VK
Sbjct: 223 VNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVK 265
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 22/179 (12%)
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKT-FPEAPKAGDKVR-- 691
D Y C Q+ V + + L+ + + P+ FP K ++ R
Sbjct: 75 DENVYECVAQNSVGEITVHAKLTVLR--------EDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 692 -LECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI----LTIPNVKVEDQGEYICRASND 746
+ C A G P P W + P+ +A ++ L I + + DQG+Y C A+N
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNS 186
Query: 747 RSALESS---VTISIQ-AEPNFTI-PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
SS + + +Q P F+I P++ + M ++ TC A G P W + E
Sbjct: 187 AGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPG-GNVNITCVAVGSPMPYVKWMQGAE 244
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 18/140 (12%)
Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRIL 726
P F + PK +G C A G P P W ++G + + E+ +L
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 727 TIPNVKV-EDQGEYICRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQAD 778
I ++ D+ Y C A N + +++ E PN + K ++
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 779 LTWTCEAFGVPDVTYSWFRN 798
T C A G PD +WF++
Sbjct: 126 ATMLCAASGNPDPEITWFKD 145
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 678 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVED 735
K+F + G+++ C A G P P+ +W R G + N + + N LT+ N+ D
Sbjct: 10 KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 69
Query: 736 QGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSW 795
G Y+CRA+N E + + +P+ I L ++ +T C+A G P +W
Sbjct: 70 GGPYVCRATNKAGEDEKQAFLQVFVQPHI-IQLKNETTYENGQVTLVCDAEGEPIPEITW 128
Query: 796 FR 797
R
Sbjct: 129 KR 130
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 36/180 (20%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL------IINDPR 264
++T SC A G P P+ WF+ LI+ ++++ L G N IIN
Sbjct: 21 EMTFSCRASGSPEPAISWFRN--------GKLIE--ENEKYILKGSNTELTVRNIINS-- 68
Query: 265 QVEDRGSYHCKASNKFGSIISESVQLAF--GFIGEFNLKRAPEIGNQNWGKAMFCDPPTN 322
D G Y C+A+NK G E + AF F+ ++ E +N + CD
Sbjct: 69 ---DGGPYVCRATNKAG----EDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGE 121
Query: 323 -YPGVNYYWARDYFPNFVEEDK----RVFVS---YDGALYFSALEQIDAGNYSCNVQSKV 374
P + + A D F F E DK R+ V +L+ ++ D+G Y C S++
Sbjct: 122 PIPEITWKRAVDGF-TFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 32/177 (18%)
Query: 405 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNV--KM 460
K+F + G+++ C A G P P+ +W R G + N + + N LT+ N+
Sbjct: 10 KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 69
Query: 461 RGPYFIKQPTDVVFDLSKRSIL-------------------NDITLSCYAGGYPNPSYEW 501
GPY + T+ + K++ L +TL C A G P P W
Sbjct: 70 GGPYVCR-ATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITW 128
Query: 502 FKEDYVQDRLVANLIDPLSDKRFTLSG----GNLIINDPRQVEDRGSYHCKASNKFG 554
+ D D D R + G +L I D + + D G Y C+A+++ G
Sbjct: 129 KR---AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK-LSDSGRYDCEAASRIG 181
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 23/158 (14%)
Query: 613 EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKF 672
E +K + + L + D G Y C +K + + F + V PH QLK
Sbjct: 47 ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQA-FLQVFVQPH--IIQLKN 103
Query: 673 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RI------ 725
+ +V L C A G P+P W R ++ + RI
Sbjct: 104 ETTYEN---------GQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 154
Query: 726 ----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
L I +VK+ D G Y C A++ + S+ + I+
Sbjct: 155 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 778 DLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKA 812
++T++C A G P+ SWFRNG+L + +LK
Sbjct: 21 EMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG 55
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 78/207 (37%), Gaps = 45/207 (21%)
Query: 589 FCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 648
C T +P V Y W + +K + L F+A+ DAG Y C V + +
Sbjct: 38 LCCRATGHPFVQYQWFK--------MNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFT 89
Query: 649 DTGRNGPFFPLKVFPHSNFQQLK---FPNNFPKTF-------------PEAPKA--GDKV 690
F S + QL P +F ++ P + K G +
Sbjct: 90 -------------FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTL 136
Query: 691 RLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL 750
L+CVA G P+P Y W + PL ++ +P V +E QG Y C NDR +
Sbjct: 137 VLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQ 191
Query: 751 ES-SVTISIQAEPNFTIPLTDKHMDNQ 776
+S V I I N P + +Q
Sbjct: 192 DSKKVEIIIDELNNLGHPDNKEQTTDQ 218
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 22/146 (15%)
Query: 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 741
+A AG V+L C A G+P Y W + +P E L V V+D G Y+C
Sbjct: 28 KAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE-----LIFNAVHVKDAGFYVC 82
Query: 742 RASNDRS----------------ALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 785
R +N+ + + + SV +++ + T + + + L C A
Sbjct: 83 RVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA 142
Query: 786 FGVPDVTYSWFRNG-ELGHQMTDLLL 810
G P Y WF+N L H+ L +
Sbjct: 143 VGSPIPHYQWFKNELPLTHETKKLYM 168
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 53/143 (37%), Gaps = 39/143 (27%)
Query: 316 FCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
C T +P V Y W + +K + L F+A+ DAG Y C V + +
Sbjct: 38 LCCRATGHPFVQYQWFK--------MNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFT 89
Query: 376 DTGRNGPFFPLKVFPHSNFQQLK---FPNNFPKTF-------------PEAPKA--GDKV 417
F S + QL P +F ++ P + K G +
Sbjct: 90 -------------FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTL 136
Query: 418 RLECVAFGYPVPSYNWTRRGSPL 440
L+CVA G P+P Y W + PL
Sbjct: 137 VLQCVAVGSPIPHYQWFKNELPL 159
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 69/199 (34%), Gaps = 57/199 (28%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQ 468
+A AG V+L C A G+P Y W + +P E I +VK G Y +
Sbjct: 28 KAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSE---LIFNAVHVKDAGFYVCRV 84
Query: 469 PTDVVFDLSKRSILN-----------------------------------DITLSCYAGG 493
+ F+ S+ S L+ + L C A G
Sbjct: 85 NNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVG 144
Query: 494 YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 553
P P Y+WFK + PL+ + L + +E +G+Y C N
Sbjct: 145 SPIPHYQWFKNEL-----------PLTHETKKLYMVPYV-----DLEHQGTYWCHVYNDR 188
Query: 554 GSIISESVQLAFGFIGEFN 572
S S+ V++ I E N
Sbjct: 189 DSQDSKKVEI---IIDELN 204
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 73/204 (35%), Gaps = 53/204 (25%)
Query: 186 IPRGPYFIKQPTDVVFDLSKRSILND--ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 243
+PRG P +++L + L C A G+P Y+WFK
Sbjct: 15 VPRGSKITVNP-------ESKAVLAGQFVKLCCRATGHPFVQYQWFK------------- 54
Query: 244 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
+K + +I + V+D G Y C+ +N F S+ QL I E + +R+
Sbjct: 55 ---MNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPE-SFQRS 110
Query: 304 PEIGNQNWGKAMFCDPPTN---YPGV--------------NYYWARDYFPNFVEEDKRVF 346
+ + K C PT+ PG +Y W ++ P E K
Sbjct: 111 --VDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYM 168
Query: 347 VSYDGALYFSALEQIDAGNYSCNV 370
V Y ++ G Y C+V
Sbjct: 169 VPY--------VDLEHQGTYWCHV 184
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 44/176 (25%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
+ L C A G+P Y+WFK +K + +I + V+D G
Sbjct: 36 VKLCCRATGHPFVQYQWFK----------------MNKEIPNGNTSELIFNAVHVKDAGF 79
Query: 545 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN---YPGV-- 599
Y C+ +N F S+ QL I E + +R+ + + K C PT+ PG
Sbjct: 80 YVCRVNNNFTFEFSQWSQLDVCDIPE-SFQRS--VDGVSESKLQICVEPTSQKLMPGSTL 136
Query: 600 ------------NYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNV 643
+Y W ++ P E K V Y ++ G Y C+V
Sbjct: 137 VLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPY--------VDLEHQGTYWCHV 184
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
K G+ +L C G P+P W R G L ++ + + LT+ + ED+G Y
Sbjct: 20 KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 741 CRASNDRSALESSVTISIQAEPNF--TIPLTDKHMDN-QADLTWTCEAFGVPDVTYSWFR 797
C A+N+ +E+S + +QA P F PL +K+ + L G P +WF
Sbjct: 80 CIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH 139
Query: 798 NGEL 801
+L
Sbjct: 140 GQKL 143
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 39/271 (14%)
Query: 488 SCYAGGYPNPSYEWFK---EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
+C A G P S +W+ E + + V + + R T+ N +ED G
Sbjct: 25 TCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRS-RLTIYNAN--------IEDAGI 74
Query: 545 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-YPGVNYYW 603
Y C+A++ G +V L F +P+ Q + C ++ P V++ +
Sbjct: 75 YRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY 134
Query: 604 ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP 663
+ D R + + L + + D G Y C + +V G
Sbjct: 135 HNEEVTTI--SDNRFAMLANNNLQILNINKSDEGIYRC--EGRVEARG------------ 178
Query: 664 HSNFQQLKFPNNFP-------KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN 716
+F+ + N P K+F + G+++ C A G P P+ +W R G + N
Sbjct: 179 EIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN 238
Query: 717 AYF--ENFNRILTIPNVKVEDQGEYICRASN 745
+ + N LT+ N+ D G Y+CRA+N
Sbjct: 239 EKYILKGSNTELTVRNIINSDGGPYVCRATN 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 24/209 (11%)
Query: 616 KRVFVSYDGA-----LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL 670
+RV V +G +Y + +E DAG Y C T L+++ F+++
Sbjct: 49 QRVVVQKEGVRSRLTIYNANIE--DAGIYRCQATDAKGQT--QEATVVLEIYQKLTFREV 104
Query: 671 KFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNW---TRRGSPLPRNAYFENFNRILT 727
P F K G+ + C P P+ +W + + N + N L
Sbjct: 105 VSPQEF--------KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 156
Query: 728 IPNVKVEDQGEYICRASND-RSALE-SSVTISIQAEPNFTIPLT--DKHMDNQADLTWTC 783
I N+ D+G Y C + R ++ + + + P ++P + + ++T++C
Sbjct: 157 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSC 216
Query: 784 EAFGVPDVTYSWFRNGELGHQMTDLLLKA 812
A G P+ SWFRNG+L + +LK
Sbjct: 217 RASGSPEPAISWFRNGKLIEENEKYILKG 245
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 89/257 (34%), Gaps = 78/257 (30%)
Query: 343 KRVFVSYDGA-----LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL 397
+RV V +G +Y + +E DAG Y C T L+++ F+++
Sbjct: 49 QRVVVQKEGVRSRLTIYNANIE--DAGIYRCQATDAKGQT--QEATVVLEIYQKLTFREV 104
Query: 398 KFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP-----RNAYFE----- 447
P F K G+ + C P P+ +W + R A
Sbjct: 105 VSPQEF--------KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 156
Query: 448 ------------------------NFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILN 483
+F I+ I NV P I P ++R
Sbjct: 157 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV----PPAISMPQKSFNATAERG--E 210
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL------IINDPR 537
++T SC A G P P+ WF+ LI+ ++++ L G N IIN
Sbjct: 211 EMTFSCRASGSPEPAISWFRN--------GKLIE--ENEKYILKGSNTELTVRNIINS-- 258
Query: 538 QVEDRGSYHCKASNKFG 554
D G Y C+A+NK G
Sbjct: 259 ---DGGPYVCRATNKAG 272
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 101/268 (37%), Gaps = 41/268 (15%)
Query: 215 SCYAGGYPNPSYEWFK---EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+C A G P S +W+ E + + V + + R T+ N +ED G
Sbjct: 25 TCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRS-RLTIYNAN--------IEDAGI 74
Query: 272 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-YPGVNYYW 330
Y C+A++ G +V L F +P+ Q + C ++ P V++ +
Sbjct: 75 YRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY 134
Query: 331 ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP 390
+ D R + + L + + D G Y C + +V G
Sbjct: 135 HNEEVTTI--SDNRFAMLANNNLQILNINKSDEGIYRC--EGRVEARG------------ 178
Query: 391 HSNFQQLKFPNNFP-------KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN 443
+F+ + N P K+F + G+++ C A G P P+ +W R G + N
Sbjct: 179 EIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN 238
Query: 444 AYF--ENFNRILTIPNV--KMRGPYFIK 467
+ + N LT+ N+ GPY +
Sbjct: 239 EKYILKGSNTELTVRNIINSDGGPYVCR 266
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 21/77 (27%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL------IINDPR 264
++T SC A G P P+ WF+ LI+ ++++ L G N IIN
Sbjct: 211 EMTFSCRASGSPEPAISWFRN--------GKLIE--ENEKYILKGSNTELTVRNIINS-- 258
Query: 265 QVEDRGSYHCKASNKFG 281
D G Y C+A+NK G
Sbjct: 259 ---DGGPYVCRATNKAG 272
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 95/483 (19%), Positives = 168/483 (34%), Gaps = 121/483 (25%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
L + + D G Y+C S + T +N F + P F + ++ EA
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAF------GSGMESLVEA- 342
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----------------NFNRILTI 455
G++VR+ GYP P W + G PL N + N+ ILT
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTN 402
Query: 456 PNVKMRGPYFIKQPTDVVFDLSKRSILNDI---------TLSCYAGGYPNPSY-EWF--- 502
P K + + + V + ++S+++ + TL+C P P + W+
Sbjct: 403 PISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQL 462
Query: 503 -KEDYVQDRLVANLIDPLSDKRFT----LSGGNLIINDPRQ---VEDRGS---------- 544
+E + ++ +P + + GGN I + Q +E +
Sbjct: 463 EEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA 522
Query: 545 -----YHCKASNKFGS---IISESVQLAFGFIGEFNLKRAPEIGNQ-------NWGKAMF 589
Y C+A NK G +IS F++ R PEI Q +++
Sbjct: 523 NVSALYKCEAVNKVGRGERVIS------------FHVTRGPEITLQPDMQPTEQESVSLW 570
Query: 590 CDPP-TNYPGVNYY--------WARDYFPNFVEEDKRVFVSYDGALYFSALEQI------ 634
C + + + +Y P V ++ + ++ ++ I
Sbjct: 571 CTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELK 630
Query: 635 -----DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP-----EAP 684
D G+Y C Q + + H +QL T +
Sbjct: 631 NASLQDQGDYVCLAQDRKTKKR------------HCVVRQLTVLERVAPTITGNLENQTT 678
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICR 742
G+ + + C A G P P W + L ++ ++ NR LTI V+ ED+G Y C+
Sbjct: 679 SIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 738
Query: 743 ASN 745
A +
Sbjct: 739 ACS 741
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 18/172 (10%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
L + + D G Y+C S + T +N F + P F + ++ EA
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAF------GSGMESLVEA- 342
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
G++VR+ GYP P W + G PL N + +LTI V D G Y +
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK-AGHVLTIMEVSERDTGNYTVILT 401
Query: 745 NDRSALESSVTISIQ-------AEPNFTIPLTDKHMDNQADLTWTCEAFGVP 789
N S + S +S+ E + P+ L TC + +P
Sbjct: 402 NPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTL--TCTVYAIP 451
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 207 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--NLIINDPR 264
SI I +SC A G P P WFK++ + LV D L G NL I R
Sbjct: 679 SIGESIEVSCTASGNPPPQIMWFKDN---ETLV-------EDSGIVLKDGNRNLTIRRVR 728
Query: 265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
+ ED G Y C+A + G E+ + G + NL+R
Sbjct: 729 K-EDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 480 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--NLIINDPR 537
SI I +SC A G P P WFK++ + LV D L G NL I R
Sbjct: 679 SIGESIEVSCTASGNPPPQIMWFKDN---ETLV-------EDSGIVLKDGNRNLTIRRVR 728
Query: 538 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 576
+ ED G Y C+A + G E+ + G + NL+R
Sbjct: 729 K-EDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERT 766
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 725 ILTIPNVKVEDQGEYIC----RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT 780
I+ + N ++DQG+Y+C R + R + +T+ + P T L ++ +
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIE 685
Query: 781 WTCEAFGVPDVTYSWFRNGELGHQMTDLLLK 811
+C A G P WF++ E + + ++LK
Sbjct: 686 VSCTASGNPPPQIMWFKDNETLVEDSGIVLK 716
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 112/310 (36%), Gaps = 37/310 (11%)
Query: 460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
M P+F +P V L + T C+ G W K++ I P
Sbjct: 3 MAPPFFDLKPVSVDLALGESG-----TFKCHVTGTAPIKITWAKDN--------REIRPG 49
Query: 520 SDKRFTLSGGNLIINDPRQVE-DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP- 577
+ + TL + + + D G Y C ASN G S S QL F K P
Sbjct: 50 GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQAPPRFIKKLEPS 108
Query: 578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR---VFVSYDGALYFSALEQI 634
I Q+ C + P + W +D ++E + FV L L
Sbjct: 109 RIVKQDEHTRYECKIGGS-PEIKVLWYKD--ETEIQESSKFRMSFVESVAVLEMYNLSVE 165
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
D+G+Y+C + + LKV F++ K P G V LEC
Sbjct: 166 DSGDYTCEAHNAAGSASSS---TSLKVKEPPVFRK--------KPHPVETLKGADVHLEC 214
Query: 695 VAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSAL 750
G P +W + L + ENF + I NV D GEY C+ASND +
Sbjct: 215 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSY 274
Query: 751 ESSVTISIQA 760
+I+++A
Sbjct: 275 TCVGSITLKA 284
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 88/253 (34%), Gaps = 51/253 (20%)
Query: 560 SVQLAFGFIGEFNLK---RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK 616
SV LA G G F AP W K D PG NY K
Sbjct: 14 SVDLALGESGTFKCHVTGTAPI--KITWAK----DNREIRPGGNY--------------K 53
Query: 617 RVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNG----PFFPLKVFPHSNFQQ 669
V L + + DAG Y+C NV K S + + G P F K+ P +Q
Sbjct: 54 MTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQ 113
Query: 670 LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRI 725
+ R EC G P W + + + ++ F +
Sbjct: 114 -----------------DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 156
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 785
L + N+ VED G+Y C A N + SS ++ ++ P F AD+ CE
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL 216
Query: 786 FGVPDVTYSWFRN 798
G P SW ++
Sbjct: 217 QGTPPFQVSWHKD 229
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
++G+ + L C A P Y+W G+ F+ + L IPN+ V + G Y C+A
Sbjct: 216 RSGENLNLSCHAASNPPAQYSWFVNGT-------FQQSTQELFIPNITVNNSGSYTCQAH 268
Query: 745 NDRSALESS--VTISIQAEP--NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
N + L + TI++ AEP F ++++ + TCE + + TY W+ N +
Sbjct: 269 NSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP-EIQNTTYLWWVNNQ 327
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 96/430 (22%), Positives = 162/430 (37%), Gaps = 65/430 (15%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGP-YFIKQPT 470
++G+ + L C A P Y+W G+ F+ + L IPN+ + + Q
Sbjct: 216 RSGENLNLSCHAASNPPAQYSWFVNGT-------FQQSTQELFIPNITVNNSGSYTCQAH 268
Query: 471 DVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDR-LVANLIDP----------L 519
+ L++ ++ T++ YA P P + V+D VA +P +
Sbjct: 269 NSDTGLNRTTV---TTITVYAEP-PKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV 324
Query: 520 SDKRFTLSGGNLIINDPRQV-------EDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 572
+++ +S + ND R + D G Y C N+ S+ V L + G +
Sbjct: 325 NNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY-GPDD 383
Query: 573 LKRAPEIGNQNWGK--AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 630
+P G ++ C +N P Y W D N + + +F+S
Sbjct: 384 PTISPSYTYYRPGVNLSLSCHAASN-PPAQYSWLIDG--NIQQHTQELFIS--------N 432
Query: 631 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 690
+ + ++G Y+C + S R + + + PK + +
Sbjct: 433 ITEKNSGLYTCQANNSASGHSR------------TTVKTITVSAELPKPSISSNNSKPVE 480
Query: 691 RLECVAFGYPVPSYN----WTRRGSPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRAS 744
+ VAF + N W G LP + + N NR LT+ NV D Y+C
Sbjct: 481 DKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQ 540
Query: 745 NDRSALESS-VTISIQAEPNF-TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELG 802
N SA S VT+ + P+ I D + A+L +C + P YSW NG +
Sbjct: 541 NSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRING-IP 599
Query: 803 HQMTDLLLKA 812
Q T +L A
Sbjct: 600 QQHTQVLFIA 609
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 4/115 (3%)
Query: 703 SYNWTRRGSPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 759
+Y W LP + + N NR LT+ NV D Y C N SA S SV +++
Sbjct: 141 TYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVL 200
Query: 760 AEPNF-TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKAV 813
P+ TI + + +L +C A P YSWF NG +L + +
Sbjct: 201 YGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNI 255
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 111/308 (36%), Gaps = 47/308 (15%)
Query: 523 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 579
R LS GN + N R D SY C+ N + S+SV L + + AP I
Sbjct: 156 RLQLSNGNRTLTLFNVTRN--DTASYKCETQNPVSARRSDSVILNVLYGPD-----APTI 208
Query: 580 GNQNWG------KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQ 633
N + C +N P ++ F +E L+ +
Sbjct: 209 SPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE-----------LFIPNITV 257
Query: 634 IDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG-----D 688
++G+Y+C Q+ SDTG N + + PK F + + D
Sbjct: 258 NNSGSYTC--QAHNSDTGLN----------RTTVTTITVYAEPPKPFITSNNSNPVEDED 305
Query: 689 KVRLECVAFGYPVPSYNWTRRGS-PLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDR 747
V L C W S P+ N NR LT+ +V D G Y C N+
Sbjct: 306 AVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNEL 365
Query: 748 SALESS-VTISIQAEPNF-TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQM 805
S S V +++ P+ TI + + +L+ +C A P YSW +G +
Sbjct: 366 SVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT 425
Query: 806 TDLLLKAV 813
+L + +
Sbjct: 426 QELFISNI 433
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 107/523 (20%), Positives = 173/523 (33%), Gaps = 109/523 (20%)
Query: 173 TYQYGMDIENPDKIPRGPYFI-------KQPTDVVFDLSKRSILNDITLSCYAGGYPNPS 225
T Y + +NP R I PT + S RS N + LSC+A P
Sbjct: 176 TASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGEN-LNLSCHAASNPPAQ 234
Query: 226 YEWFK----EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281
Y WF + Q+ + N+ V + GSY C+A N
Sbjct: 235 YSWFVNGTFQQSTQELFIPNIT----------------------VNNSGSYTCQAHNSDT 272
Query: 282 SIISESVQLAFGFIGEFNLKRAPEIGNQNW-------GKAMFCDPPTNYPGVNYYWARDY 334
+ +V I + P I + N A+ C+P Y W +
Sbjct: 273 GLNRTTVTT----ITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQ--NTTYLWWVNN 326
Query: 335 FPNFVEEDKRVFVSYDG-ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN 393
+ R+ +S D L ++ + D G Y C +Q+++S + P
Sbjct: 327 --QSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELS-VDHSDPVI--------- 374
Query: 394 FQQLKFPNNFPKTFPEAP--KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR 451
L P++ P P + G + L C A P Y+W G+ + +
Sbjct: 375 LNVLYGPDD-PTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN-------IQQHTQ 426
Query: 452 ILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDR- 510
L I N+ + + R+ + IT+S P PS V+D+
Sbjct: 427 ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS---AELPKPSISSNNSKPVEDKD 483
Query: 511 LVANLIDPLSDK----------------RFTLSGGN---LIINDPRQVEDRGSYHCKASN 551
VA +P + R LS GN + N R D +Y C N
Sbjct: 484 AVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTR--NDARAYVCGIQN 541
Query: 552 KFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKA-MFCDPPTNYPGVNYYWARDYFPN 610
+ S+ V L + + + P+ + + C +N P Y W + P
Sbjct: 542 SVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASN-PSPQYSWRINGIPQ 600
Query: 611 FVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 653
+ L+ + + + G Y+C V + TGRN
Sbjct: 601 ----------QHTQVLFIAKITPNNNGTYACFVSNLA--TGRN 631
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 112/310 (36%), Gaps = 37/310 (11%)
Query: 460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
M P+F +P V L + T C+ G W K++ I P
Sbjct: 3 MAPPFFDLKPVSVDLALGESG-----TFKCHVTGTAPIKITWAKDN--------REIRPG 49
Query: 520 SDKRFTLSGGNLIINDPRQVE-DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP- 577
+ + TL + + + D G Y C ASN G S S QL F K P
Sbjct: 50 GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPS 108
Query: 578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKR---VFVSYDGALYFSALEQI 634
I Q+ C + P + W +D ++E + FV L L
Sbjct: 109 RIVKQDEHTRYECKIGGS-PEIKVLWYKD--ETEIQESSKFRMSFVESVAVLEMYNLSVE 165
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
D+G+Y+C + + LKV F++ K P G V LEC
Sbjct: 166 DSGDYTCEAHNAAGSASSS---TSLKVKEPPVFRK--------KPHPVETLKGADVHLEC 214
Query: 695 VAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSAL 750
G P +W + L + ENF + I NV D GEY C+ASND +
Sbjct: 215 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSY 274
Query: 751 ESSVTISIQA 760
+I+++A
Sbjct: 275 TCVGSITLKA 284
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 88/253 (34%), Gaps = 51/253 (20%)
Query: 560 SVQLAFGFIGEFNLK---RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK 616
SV LA G G F AP W K D PG NY K
Sbjct: 14 SVDLALGESGTFKCHVTGTAPI--KITWAK----DNREIRPGGNY--------------K 53
Query: 617 RVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNG----PFFPLKVFPHSNFQQ 669
V L + + DAG Y+C NV K S + + G P F K+ P +Q
Sbjct: 54 MTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQ 113
Query: 670 LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRI 725
+ R EC G P W + + + ++ F +
Sbjct: 114 -----------------DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 156
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 785
L + N+ VED G+Y C A N + SS ++ ++ P F AD+ CE
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL 216
Query: 786 FGVPDVTYSWFRN 798
G P SW ++
Sbjct: 217 QGTPPFQVSWHKD 229
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746
G + L+CVA G P+P Y W + PL ++ +P V +E QG Y C ND
Sbjct: 18 GSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYND 72
Query: 747 RSALES 752
R + +S
Sbjct: 73 RDSQDS 78
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPL 440
G + L+CVA G P+P Y W + PL
Sbjct: 18 GSTLVLQCVAVGSPIPHYQWFKNELPL 44
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 178 MDIENPDKIPRG-PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD 236
+ I DK P G P + P V ++ + + ++C A G P P+ W K D
Sbjct: 98 LTIYEGDKTPAGFPVITQGPGTRVIEVG-----HTVLMTCKAIGNPTPNIYWIKNQTKVD 152
Query: 237 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+S+ R++L G L I + R+ ED+G Y C A N G+ S++ L
Sbjct: 153 ---------MSNPRYSLKDGFLQIENSRE-EDQGKYECVAENSMGTEHSKATNL 196
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
+ ++C A G P P+ W K D +S+ R++L G L I + R+ ED+G
Sbjct: 128 VLMTCKAIGNPTPNIYWIKNQTKVD---------MSNPRYSLKDGFLQIENSRE-EDQGK 177
Query: 545 YHCKASNKFGSIISESVQL 563
Y C A N G+ S++ L
Sbjct: 178 YECVAENSMGTEHSKATNL 196
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 671 KFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPL----PRNAYFEN 721
K P FP + P + G V + C A G P P+ W + + + PR + +
Sbjct: 105 KTPAGFP-VITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG 163
Query: 722 FNRILTIPNVKVEDQGEYICRASNDRSALESSVT 755
F L I N + EDQG+Y C A N S T
Sbjct: 164 F---LQIENSREEDQGKYECVAENSMGTEHSKAT 194
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 694 CVAFGYPVPSYNWTRRGSPLP----RNAYFENFNRILTIPNVKVEDQGEYICRASND-RS 748
C YP P +WTR + R + EN ++LTI +V+ D G Y C A+N
Sbjct: 29 CAVESYPQPEISWTRNKILIKLFDTRYSIREN-GQLLTILSVEDSDDGIYCCTANNGVGG 87
Query: 749 ALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 797
A+ES + ++ +P T P + + C G P + SW +
Sbjct: 88 AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIK 136
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-ILTIPNVKVEDQGEYICRASN 745
G K L C G P PS +W + S L N+ L I NV+ ED G+Y C A N
Sbjct: 115 GLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKN 174
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 34/194 (17%)
Query: 184 DKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 243
+K+P+ P I P + V L + T C YP P W + ++
Sbjct: 2 EKLPKAP-VITTPLETVDALVEEVA----TFMCAVESYPQPEISWTRN---------KIL 47
Query: 244 DPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
L D R+++ G L+ + D G Y C A+N G + G +K
Sbjct: 48 IKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESC--------GALQVKM 99
Query: 303 APEIGN--------QNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY 354
P+I + + C N P + W + + + E+ R+ V G+L
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGN-PKPSVSWIKG--DSALRENSRIAVLESGSLR 156
Query: 355 FSALEQIDAGNYSC 368
+++ DAG Y C
Sbjct: 157 IHNVQKEDAGQYRC 170
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 458 VKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 517
VKM+ P + P +V +++L C G P PS W K D
Sbjct: 97 VKMK-PKITRPPINVKIIEGLKAVL-----PCTTMGNPKPSVSWIKGDSALRE------- 143
Query: 518 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ + L G+L I++ Q ED G Y C A N G+ S+ V+L
Sbjct: 144 --NSRIAVLESGSLRIHNV-QKEDAGQYRCVAKNSLGTAYSKLVKL 186
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 214 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYH 273
L C G P PS W K D + + L G+L I++ Q ED G Y
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRE---------NSRIAVLESGSLRIHNV-QKEDAGQYR 169
Query: 274 CKASNKFGSIISESVQL 290
C A N G+ S+ V+L
Sbjct: 170 CVAKNSLGTAYSKLVKL 186
Score = 36.6 bits (83), Expect = 0.062, Method: Composition-based stats.
Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 29/165 (17%)
Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGS 544
T C YP P W + ++ L D R+++ G L+ + D G
Sbjct: 26 TFMCAVESYPQPEISWTRN---------KILIKLFDTRYSIRENGQLLTILSVEDSDDGI 76
Query: 545 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN--------QNWGKAMFCDPPTNY 596
Y C A+N G + G +K P+I + + C N
Sbjct: 77 YCCTANNGVGGAVESC--------GALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGN- 127
Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 641
P + W + + + E+ R+ V G+L +++ DAG Y C
Sbjct: 128 PKPSVSWIKG--DSALRENSRIAVLESGSLRIHNVQKEDAGQYRC 170
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRG-----SPLPR-NAYFENFNRILTIPNVKVEDQGEYI 740
G E G+PVP +W R G S LP F + LTIP V + G Y
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79
Query: 741 CRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 797
+A+N S+ + ++AE PNF L + + + G+P ++R
Sbjct: 80 LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139
Query: 798 NG 799
+G
Sbjct: 140 DG 141
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRG-----SPLPR-NAYFENFNRILTIPNVKVEDQGEYI 740
G E G+PVP +W R G S LP F + LTIP V + G Y
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79
Query: 741 CRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 797
+A+N S+ + ++AE PNF L + + + G+P ++R
Sbjct: 80 LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR 139
Query: 798 NG 799
+G
Sbjct: 140 DG 141
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 673 PNNFPKTFPEAP-KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR----ILT 727
P NF + + G +VRL+ G P P + R G+ + + F+ L
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLL 162
Query: 728 IPNVKVEDQGEYICRASNDRSALESSVTISIQAE 761
I ED G Y A+N S+ + +Q E
Sbjct: 163 IAEAYPEDSGTYSVNATNSVGRATSTAELLVQGE 196
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 28/191 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P FIK+P D + + + + C A G P P W K+ + I+
Sbjct: 7 PRFIKEPKDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 249 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNL 300
F S G ++ P R D Y C A N G I + QL GF N+
Sbjct: 57 --FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP---NI 111
Query: 301 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 357
P++ + M C N P W +D+ P + + R+ GAL +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 358 LEQIDAGNYSC 368
E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 28/191 (14%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
P FIK+P D + + + + C A G P P W K+ + I+
Sbjct: 7 PRFIKEPKDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 522 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNL 573
F S G ++ P R D Y C A N G I + QL GF N+
Sbjct: 57 --FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP---NI 111
Query: 574 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 630
P++ + M C N P W +D+ P + + R+ GAL +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 631 LEQIDAGNYSC 641
E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 18/140 (12%)
Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRIL 726
P F + PK +G C A G P P W ++G + + E+ +L
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 727 TIPNVKV-EDQGEYICRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQAD 778
I ++ D+ Y C A N + +++ E PN + K ++
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 779 LTWTCEAFGVPDVTYSWFRN 798
T C A G PD +WF++
Sbjct: 126 ATMLCAASGNPDPEITWFKD 145
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 173 TYQYGMDIENPDKIPRG-PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE 231
T + + D++P G P P V + ++ + T+ C A G P+P WFK
Sbjct: 91 TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA-----TMLCAASGNPDPEITWFK- 144
Query: 232 DYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFG 281
D++ +DP S+ R L G L I + D+G Y C A+N G
Sbjct: 145 DFLP-------VDPSASNGRIKQLRSGALQIESSEET-DQGKYECVATNSAG 188
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRG 543
T+ C A G P+P WFK D++ +DP S+ R L G L I + D+G
Sbjct: 127 TMLCAASGNPDPEITWFK-DFLP-------VDPSASNGRIKQLRSGALQIESSEET-DQG 177
Query: 544 SYHCKASNKFG 554
Y C A+N G
Sbjct: 178 KYECVATNSAG 188
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 678 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVED 735
K+F + G+++ C A G P P+ +W R G + N + + N LT+ N+ D
Sbjct: 104 KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 163
Query: 736 QGEYICRASN 745
G Y+CRA+N
Sbjct: 164 GGPYVCRATN 173
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 27/113 (23%)
Query: 448 NFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYV 507
+F I+ I NV P I P ++R ++T SC A G P P+ WF+
Sbjct: 85 DFRDIIVIVNV----PPAISMPQKSFNATAERG--EEMTFSCRASGSPEPAISWFRN--- 135
Query: 508 QDRLVANLIDPLSDKRFTLSGGNL------IINDPRQVEDRGSYHCKASNKFG 554
LI+ ++++ L G N IIN D G Y C+A+NK G
Sbjct: 136 -----GKLIE--ENEKYILKGSNTELTVRNIINS-----DGGPYVCRATNKAG 176
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 681 PEAPKAGDKVRLECVAFGYPVPSYNW---TRRGSPLPRNAYFENFNRILTIPNVKVEDQG 737
P+ K G+ + C P P+ +W + + N + N L I N+ D+G
Sbjct: 11 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEG 70
Query: 738 EYICRASND-RSALE-SSVTISIQAEPNFTIPLT--DKHMDNQADLTWTCEAFGVPDVTY 793
Y C + R ++ + + + P ++P + + ++T++C A G P+
Sbjct: 71 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI 130
Query: 794 SWFRNGELGHQMTDLLLKA 812
SWFRNG+L + +LK
Sbjct: 131 SWFRNGKLIEENEKYILKG 149
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 21/77 (27%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL------IINDPR 264
++T SC A G P P+ WF+ LI+ ++++ L G N IIN
Sbjct: 115 EMTFSCRASGSPEPAISWFRN--------GKLIE--ENEKYILKGSNTELTVRNIINS-- 162
Query: 265 QVEDRGSYHCKASNKFG 281
D G Y C+A+NK G
Sbjct: 163 ---DGGPYVCRATNKAG 176
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 405 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNV--KM 460
K+F + G+++ C A G P P+ +W R G + N + + N LT+ N+
Sbjct: 104 KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSD 163
Query: 461 RGPYFIK 467
GPY +
Sbjct: 164 GGPYVCR 170
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 28/191 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P FIK+P D + + + + C A G P P W K+ + I+
Sbjct: 7 PRFIKEPKDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 249 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNL 300
F S G ++ P R D Y C A N G I + QL GF N+
Sbjct: 57 --FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP---NI 111
Query: 301 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 357
P++ + M C N P W +D+ P + + R+ GAL +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 358 LEQIDAGNYSC 368
E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 28/191 (14%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
P FIK+P D + + + + C A G P P W K+ + I+
Sbjct: 7 PRFIKEPKDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 522 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNL 573
F S G ++ P R D Y C A N G I + QL GF N+
Sbjct: 57 --FDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFP---NI 111
Query: 574 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 630
P++ + M C N P W +D+ P + + R+ GAL +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 631 LEQIDAGNYSC 641
E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 18/140 (12%)
Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRIL 726
P F + PK +G C A G P P W ++G + + E+ +L
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 727 TIPNVKV-EDQGEYICRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQAD 778
I ++ D+ Y C A N + +++ E PN + K ++
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRT 125
Query: 779 LTWTCEAFGVPDVTYSWFRN 798
T C A G PD +WF++
Sbjct: 126 ATMLCAASGNPDPEITWFKD 145
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 173 TYQYGMDIENPDKIPRG-PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE 231
T + + D++P G P P V + ++ + T+ C A G P+P WFK
Sbjct: 91 TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA-----TMLCAASGNPDPEITWFK- 144
Query: 232 DYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFG 281
D++ +DP S+ R L G L I + D+G Y C A+N G
Sbjct: 145 DFLP-------VDPSASNGRIKQLRSGALQIESSEET-DQGKYECVATNSAG 188
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRG 543
T+ C A G P+P WFK D++ +DP S+ R L G L I + D+G
Sbjct: 127 TMLCAASGNPDPEITWFK-DFLP-------VDPSASNGRIKQLRSGALQIESSEET-DQG 177
Query: 544 SYHCKASNKFG 554
Y C A+N G
Sbjct: 178 KYECVATNSAG 188
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/342 (20%), Positives = 121/342 (35%), Gaps = 62/342 (18%)
Query: 256 GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAM 315
G+L+ P Q D G Y C A G S + ++ K + + +
Sbjct: 62 GSLVFLRP-QASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120
Query: 316 FCDPPTNYPGVNYYWAR-----DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN---YS 367
C P YP W + D + + D+R+ DG LYF+ + + D + Y
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV 180
Query: 368 CNVQSKVSDTGRNGPFFPLKVFPHSN--FQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 425
C ++ D + +K N ++ P K KAGD + C+
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDM--MAKAGDVTMIYCMYGS 238
Query: 426 YPVPSYNWTRRGSPLPRNA--YFENFNRI--------LTIPN------------------ 457
P+ N+ + G + N NR T+P
Sbjct: 239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298
Query: 458 -----VKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 512
+ P + ++P V+ + K+ D+T+ C G P P+ W
Sbjct: 299 HSLKLTVVSAPKYEQKPEKVI--VVKQG--QDVTIPCKVTGLPAPNVVW----------- 343
Query: 513 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 554
++ PLS R T++ L+I + D+G Y C+A+N+ G
Sbjct: 344 SHNAKPLSGGRATVTDSGLVIKGVKN-GDKGYYGCRATNEHG 384
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 98/279 (35%), Gaps = 44/279 (15%)
Query: 493 GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNL--IINDPRQVEDRGSYHCKA 549
YP P W K D A++ D D+R T GNL I V D Y C A
Sbjct: 127 AYPKPLITWKKRLSGADPN-ADVTD--FDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTA 183
Query: 550 SNKFGSIISESVQLA-----------FGFIGE-----FNLKRAPEIGNQNWGKAMFCDPP 593
N + + E V L G+ GE + + G+ M+ P
Sbjct: 184 KN---AAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 240
Query: 594 TNYPGVNYYW-ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 652
YP NY+ +D N + R + L F D G Y+C V + V +
Sbjct: 241 MGYP--NYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298
Query: 653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPE---APKAGDKVRLECVAFGYPVPSYNWTRR 709
+ L V ++Q PE K G V + C G P P+ W+
Sbjct: 299 HS--LKLTVVSAPKYEQK----------PEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHN 346
Query: 710 GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 748
PL + L I VK D+G Y CRA+N+
Sbjct: 347 AKPL-SGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHG 384
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 78/386 (20%), Positives = 131/386 (33%), Gaps = 65/386 (16%)
Query: 309 QNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
+N + C N GV Y W +D +E +G+L F + D G+Y C
Sbjct: 20 ENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQC 79
Query: 369 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA-FGYP 427
++ +V +F++ + KT + P G +L+CV YP
Sbjct: 80 FAETPAG-------VASSRVI---SFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYP 129
Query: 428 VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGP----YFIKQPTDVVFDLSK----- 478
P W +R S NA +F+R +T GP YF + V D+ K
Sbjct: 130 KPLITWKKRLSGADPNADVTDFDRRITA------GPDGNLYFTIVTKEDVSDIYKYVCTA 183
Query: 479 --RSILNDITLSCY---------AGGYPNPSYEWFKEDYVQDRLVANLI------DPLS- 520
++ ++ L Y +G P ++ +D + +I +P+
Sbjct: 184 KNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGY 243
Query: 521 ---------------DK--RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
D+ R + G ++ ED G Y C+ N G S++L
Sbjct: 244 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 303
Query: 564 AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD 623
++ K I + T P N W+ + P R V+ D
Sbjct: 304 TVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKP---LSGGRATVT-D 359
Query: 624 GALYFSALEQIDAGNYSCNVQSKVSD 649
L ++ D G Y C ++ D
Sbjct: 360 SGLVIKGVKNGDKGYYGCRATNEHGD 385
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
D+T+ C G P P+ W ++ PLS R T++ L+I + D+G
Sbjct: 326 DVTIPCKVTGLPAPNVVW-----------SHNAKPLSGGRATVTDSGLVIKGVKN-GDKG 373
Query: 271 SYHCKASNKFG 281
Y C+A+N+ G
Sbjct: 374 YYGCRATNEHG 384
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 83/244 (34%), Gaps = 43/244 (17%)
Query: 220 GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNL--IINDPRQVEDRGSYHCKA 276
YP P W K D A++ D D+R T GNL I V D Y C A
Sbjct: 127 AYPKPLITWKKRLSGADPN-ADVTD--FDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTA 183
Query: 277 SNKFGSIISESVQLA-----------FGFIGE-----FNLKRAPEIGNQNWGKAMFCDPP 320
N + + E V L G+ GE + + G+ M+ P
Sbjct: 184 KN---AAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 240
Query: 321 TNYPGVNYYW-ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 379
YP NY+ +D N + R + L F D G Y+C V + V +
Sbjct: 241 MGYP--NYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298
Query: 380 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPE---APKAGDKVRLECVAFGYPVPSYNWTRR 436
+ L V ++Q PE K G V + C G P P+ W+
Sbjct: 299 HS--LKLTVVSAPKYEQK----------PEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHN 346
Query: 437 GSPL 440
PL
Sbjct: 347 AKPL 350
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 178 MDIENPDKIPRG-PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD 236
+ I DK P G P + P V ++ + + ++C A G P P+ W K D
Sbjct: 100 LTIYEGDKTPAGFPVITQGPGTRVIEVG-----HTVLMTCKAIGNPTPNIYWIKNQTKVD 154
Query: 237 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+S+ R++L G L I + R+ ED+G Y C A N G+ S++ L
Sbjct: 155 ---------MSNPRYSLKDGFLQIENSRE-EDQGKYECVAENSMGTEHSKATNL 198
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
+ ++C A G P P+ W K D +S+ R++L G L I + R+ ED+G
Sbjct: 130 VLMTCKAIGNPTPNIYWIKNQTKVD---------MSNPRYSLKDGFLQIENSRE-EDQGK 179
Query: 545 YHCKASNKFGSIISESVQL 563
Y C A N G+ S++ L
Sbjct: 180 YECVAENSMGTEHSKATNL 198
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 13/94 (13%)
Query: 671 KFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPL----PRNAYFEN 721
K P FP + P + G V + C A G P P+ W + + + PR + +
Sbjct: 107 KTPAGFP-VITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG 165
Query: 722 FNRILTIPNVKVEDQGEYICRASNDRSALESSVT 755
F L I N + EDQG+Y C A N S T
Sbjct: 166 F---LQIENSREEDQGKYECVAENSMGTEHSKAT 196
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ P+D++ + + TL+C A G P P+ EW+K +R+ + DP S
Sbjct: 10 PRIVEHPSDLIVSKGEPA-----TLNCKAEGRPTPTIEWYKGG---ERVETDKDDPRS-H 60
Query: 250 RFTLSGGNL----IINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
R L G+L I++ + D G Y C A N G +S L
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P ++ P+D++ + + TL+C A G P P+ EW+K +R+ + DP S
Sbjct: 10 PRIVEHPSDLIVSKGEPA-----TLNCKAEGRPTPTIEWYKGG---ERVETDKDDPRS-H 60
Query: 523 RFTLSGGNL----IINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
R L G+L I++ + D G Y C A N G +S L
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 65/172 (37%), Gaps = 18/172 (10%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
L + + D G Y+C S + T +N F + P F + ++ EA
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAF------GSGMESLVEA- 212
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
G++VR+ GYP P W + G PL N + +LTI V D G Y +
Sbjct: 213 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKA-GHVLTIMEVSERDTGNYTVILT 271
Query: 745 NDRSALESSVTISIQ-------AEPNFTIPLTDKHMDNQADLTWTCEAFGVP 789
N S + S +S+ E + P+ L TC + +P
Sbjct: 272 NPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTL--TCTVYAIP 321
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 34/177 (19%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
L + + D G Y+C S + T +N F + P F + ++ EA
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAF------GSGMESLVEA- 212
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----------------NFNRILTI 455
G++VR+ GYP P W + G PL N + N+ ILT
Sbjct: 213 TVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTN 272
Query: 456 PNVKMRGPYFIKQPTDVVFDLSKRSILNDI---------TLSCYAGGYPNPSY-EWF 502
P K + + + V + ++S+++ + TL+C P P + W+
Sbjct: 273 PISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWY 329
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 72/196 (36%), Gaps = 38/196 (19%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P F+K P D + + + + C A G P P W K+ +S
Sbjct: 8 PVFVKVPED------QTGLSGGVASFVCQATGEPKPRITWMKKG-----------KKVSS 50
Query: 249 KRFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFI 295
+RF + +G L I R D Y C A+N G I + E QL GF
Sbjct: 51 QRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFP 110
Query: 296 GEFNLKRAPEIGNQNWGK--AMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGA 352
+ P++ G+ M C N P W +D+ P + + R+ GA
Sbjct: 111 ---TIDMGPQLKVVEKGRTATMLCAAGGN-PDPEISWFKDFLPVDPAASNGRIKQLRSGA 166
Query: 353 LYFSALEQIDAGNYSC 368
L + E+ D G Y C
Sbjct: 167 LQIESSEESDQGKYEC 182
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 72/196 (36%), Gaps = 38/196 (19%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
P F+K P D + + + + C A G P P W K+ +S
Sbjct: 8 PVFVKVPED------QTGLSGGVASFVCQATGEPKPRITWMKKG-----------KKVSS 50
Query: 522 KRFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFI 568
+RF + +G L I R D Y C A+N G I + E QL GF
Sbjct: 51 QRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFP 110
Query: 569 GEFNLKRAPEIGNQNWGK--AMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGA 625
+ P++ G+ M C N P W +D+ P + + R+ GA
Sbjct: 111 ---TIDMGPQLKVVEKGRTATMLCAAGGN-PDPEISWFKDFLPVDPAASNGRIKQLRSGA 166
Query: 626 LYFSALEQIDAGNYSC 641
L + E+ D G Y C
Sbjct: 167 LQIESSEESDQGKYEC 182
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 13/126 (10%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY----FEN-FNRILTIPNVKVE-DQGEY 739
+G C A G P P W ++G + + F++ +L I ++V+ D+ Y
Sbjct: 21 SGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIY 80
Query: 740 ICRASNDRSALESSVTISIQAEPNFT--IPLTD-----KHMDNQADLTWTCEAFGVPDVT 792
C A+N + +S +S+ E P D K ++ T C A G PD
Sbjct: 81 ECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPE 140
Query: 793 YSWFRN 798
SWF++
Sbjct: 141 ISWFKD 146
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSDKRF-TLSGGNLIINDPRQVEDRG 270
T+ C AGG P+P WFK D++ +DP S+ R L G L I + D+G
Sbjct: 128 TMLCAAGGNPDPEISWFK-DFLP-------VDPAASNGRIKQLRSGALQIESSEE-SDQG 178
Query: 271 SYHCKASNKFGSIISESVQL 290
Y C A+N G+ S L
Sbjct: 179 KYECVATNSAGTRYSAPANL 198
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSDKRF-TLSGGNLIINDPRQVEDRG 543
T+ C AGG P+P WFK D++ +DP S+ R L G L I + D+G
Sbjct: 128 TMLCAAGGNPDPEISWFK-DFLP-------VDPAASNGRIKQLRSGALQIESSEE-SDQG 178
Query: 544 SYHCKASNKFGSIISESVQL 563
Y C A+N G+ S L
Sbjct: 179 KYECVATNSAGTRYSAPANL 198
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 633 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AG 687
Q D Y C + + + + S ++ + P+ FP T P+ G
Sbjct: 74 QRDEAIYECTATNSLGEINTSAKL--------SVLEEDQLPSGFP-TIDMGPQLKVVEKG 124
Query: 688 DKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI----LTIPNVKVEDQGEYICRA 743
+ C A G P P +W + P+ A ++ L I + + DQG+Y C A
Sbjct: 125 RTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVA 184
Query: 744 SN 745
+N
Sbjct: 185 TN 186
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICR 742
G+ R C G PVP+ W R+G L +A + + I +V+ D+G Y
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 88
Query: 743 ASNDRSALESSVTISIQ 759
N E+ T++IQ
Sbjct: 89 VENSEGKQEAEFTLTIQ 105
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA 444
G+ R C G PVP+ W R+G L +A
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSA 59
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/194 (24%), Positives = 71/194 (36%), Gaps = 34/194 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P FIK P D + + + + C A G P P W K+ +S
Sbjct: 7 PVFIKVPED------QTGLSGGVASFVCQATGEPKPRITWMKKG-----------KKVSS 49
Query: 249 KRFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFI 295
+RF + +G L I R D Y C A+N G I + E QL GF
Sbjct: 50 QRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGF- 108
Query: 296 GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALY 354
++ ++ + M C N P W +D+ P + + R+ GAL
Sbjct: 109 PSIDMGPQLKVVEKARTATMLCAAGGN-PDPEISWFKDFLPVDPATSNGRIKQLRSGALQ 167
Query: 355 FSALEQIDAGNYSC 368
+ E+ D G Y C
Sbjct: 168 IESSEESDQGKYEC 181
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/194 (24%), Positives = 71/194 (36%), Gaps = 34/194 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
P FIK P D + + + + C A G P P W K+ +S
Sbjct: 7 PVFIKVPED------QTGLSGGVASFVCQATGEPKPRITWMKKG-----------KKVSS 49
Query: 522 KRFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFI 568
+RF + +G L I R D Y C A+N G I + E QL GF
Sbjct: 50 QRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGF- 108
Query: 569 GEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALY 627
++ ++ + M C N P W +D+ P + + R+ GAL
Sbjct: 109 PSIDMGPQLKVVEKARTATMLCAAGGN-PDPEISWFKDFLPVDPATSNGRIKQLRSGALQ 167
Query: 628 FSALEQIDAGNYSC 641
+ E+ D G Y C
Sbjct: 168 IESSEESDQGKYEC 181
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY----FEN-FNRILTIPNVKVE-DQGEY 739
+G C A G P P W ++G + + F++ +L I ++V+ D+ Y
Sbjct: 20 SGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIY 79
Query: 740 ICRASNDRSALESSVTISI----QAEPNFTIPLTD-----KHMDNQADLTWTCEAFGVPD 790
C A+N + +S +S+ Q P F P D K ++ T C A G PD
Sbjct: 80 ECTATNSLGEINTSAKLSVLEEEQLPPGF--PSIDMGPQLKVVEKARTATMLCAAGGNPD 137
Query: 791 VTYSWFRN 798
SWF++
Sbjct: 138 PEISWFKD 145
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSDKRF-TLSGGNLIINDPRQVEDRG 270
T+ C AGG P+P WFK D++ +DP S+ R L G L I + D+G
Sbjct: 127 TMLCAAGGNPDPEISWFK-DFLP-------VDPATSNGRIKQLRSGALQIESSEE-SDQG 177
Query: 271 SYHCKASNKFGSIISESVQL 290
Y C A+N G+ S L
Sbjct: 178 KYECVATNSAGTRYSAPANL 197
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSDKRF-TLSGGNLIINDPRQVEDRG 543
T+ C AGG P+P WFK D++ +DP S+ R L G L I + D+G
Sbjct: 127 TMLCAAGGNPDPEISWFK-DFLP-------VDPATSNGRIKQLRSGALQIESSEE-SDQG 177
Query: 544 SYHCKASNKFGSIISESVQL 563
Y C A+N G+ S L
Sbjct: 178 KYECVATNSAGTRYSAPANL 197
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 20/125 (16%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------------LTIPNVKVE 734
G V+L C G P W + G A +N +++ L++ +V+
Sbjct: 17 GQPVKLNCSVEGXEEPDIQWVKDG------AVVQNLDQLYIPVSEQHWIGFLSLKSVERS 70
Query: 735 DQGEYICRASND-RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD-VT 792
D G Y C+ + + + V ++++ P FT+ D + A +CEA G P+ VT
Sbjct: 71 DAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVT 130
Query: 793 YSWFR 797
W+R
Sbjct: 131 IVWWR 135
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICR 742
G+ R C G PVP+ W R+G L +A + + I +V+ D+G Y
Sbjct: 23 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 82
Query: 743 ASNDRSALESSVTISIQ 759
N E+ T++IQ
Sbjct: 83 VENSEGKQEAEFTLTIQ 99
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA 444
G+ R C G PVP+ W R+G L +A
Sbjct: 23 GESARFSCDTDGEPVPTVTWLRKGQVLSTSA 53
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 64/176 (36%), Gaps = 18/176 (10%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + LSC G+ +P EW + RLV N I + R T + + E
Sbjct: 20 NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR-E 78
Query: 268 DRGSYHCKAS----NKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNY 323
D G+Y C S N +G + + + L N+ + IGN+ + C
Sbjct: 79 DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNR---AVLTCSEQDGS 135
Query: 324 PGVNYYWARD--YFPNFVEEDKR------VFVSYDGALYFSALEQIDAGNYSCNVQ 371
P Y W +D P + + V G L F L D G YSC +
Sbjct: 136 PPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 64/176 (36%), Gaps = 18/176 (10%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + LSC G+ +P EW + RLV N I + R T + + E
Sbjct: 20 NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR-E 78
Query: 541 DRGSYHCKAS----NKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNY 596
D G+Y C S N +G + + + L N+ + IGN+ + C
Sbjct: 79 DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNR---AVLTCSEQDGS 135
Query: 597 PGVNYYWARD--YFPNFVEEDKR------VFVSYDGALYFSALEQIDAGNYSCNVQ 644
P Y W +D P + + V G L F L D G YSC +
Sbjct: 136 PPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEAR 191
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 31/156 (19%)
Query: 661 VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE 720
V HS+ +++ P N P V+L C G+ P W R +
Sbjct: 5 VTVHSSEPEVRIPENNP------------VKLSCAYSGFSSPRVEWKFDQGDTTRLVCYN 52
Query: 721 NF------NRILTIP------NVKVEDQGEYICRASNDRSALESSVTISI-----QAEPN 763
N +R+ +P +V ED G Y C S + V + + ++P
Sbjct: 53 NKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPT 112
Query: 764 FTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
IP + + N+A LT + E G P Y+WF++G
Sbjct: 113 VNIP-SSATIGNRAVLTCS-EQDGSPPSEYTWFKDG 146
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 204 SKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG------- 255
S +I N L+C G P Y WFK+ V +P S + F+ S
Sbjct: 117 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP------TNPKSTRAFSNSSYVLNPTT 170
Query: 256 GNLIINDPRQVEDRGSYHCKASNKFGS-IISESVQL 290
G L+ DP D G Y C+A N +G+ + S +V++
Sbjct: 171 GELVF-DPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 477 SKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG------- 528
S +I N L+C G P Y WFK+ V +P S + F+ S
Sbjct: 117 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP------TNPKSTRAFSNSSYVLNPTT 170
Query: 529 GNLIINDPRQVEDRGSYHCKASNKFGS-IISESVQL 563
G L+ DP D G Y C+A N +G+ + S +V++
Sbjct: 171 GELVF-DPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 62/159 (38%), Gaps = 23/159 (14%)
Query: 614 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFP 673
ED+ F+ + F ++ + D G Y+C VS+ G N + +KV L P
Sbjct: 60 EDRVTFLPT--GITFKSVTREDTGTYTC----MVSEEGGNS-YGEVKV----KLIVLVPP 108
Query: 674 NNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNA----YFENFNRILTI 728
+ P + G++ L C G P Y W + G +P N F N + +L
Sbjct: 109 SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP 168
Query: 729 PN-------VKVEDQGEYICRASNDRSALESSVTISIQA 760
+ D GEY C A N +S + ++A
Sbjct: 169 TTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-----RILTIPNVKVEDQGEYICRAS 744
V L C A G+P P+ WT+ G P+ + E ++ L I V D+ EYIC A
Sbjct: 31 VTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAE 90
Query: 745 NDRSALESSVTISIQAE 761
N ++++ + + A+
Sbjct: 91 NKAGEQDATIHLKVFAK 107
Score = 32.7 bits (73), Expect = 0.78, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+TL+C A G+P P+ W K+ ++ D F G LII + D
Sbjct: 31 VTLACDADGFPEPTMTWTKDGEPIEQE-----DNEEKYSFNYDGSELIIKKVDK-SDEAE 84
Query: 272 YHCKASNKFG 281
Y C A NK G
Sbjct: 85 YICIAENKAG 94
Score = 32.7 bits (73), Expect = 0.78, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
+TL+C A G+P P+ W K+ ++ D F G LII + D
Sbjct: 31 VTLACDADGFPEPTMTWTKDGEPIEQE-----DNEEKYSFNYDGSELIIKKVDK-SDEAE 84
Query: 545 YHCKASNKFG 554
Y C A NK G
Sbjct: 85 YICIAENKAG 94
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN 450
V L C A G+P P+ WT+ G P+ + E ++
Sbjct: 31 VTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYS 64
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 681 PEAPKA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRI-LTIPNVK 732
P++ K GD V+LEC P P W R + N Y +N R+ L I +V
Sbjct: 22 PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVN 81
Query: 733 VEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 767
+D G Y A N+ + + + A PN T+P
Sbjct: 82 KKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 69/191 (36%), Gaps = 28/191 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P FIK+P D + + + + C A G P P W K+ + I+
Sbjct: 7 PVFIKKPVDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 249 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNL 300
F S G ++ P R D Y C A N G + + QL GF N+
Sbjct: 57 --FDESAGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFP---NI 111
Query: 301 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 357
P++ + M C N P W +D+ P + + R+ G L +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIES 170
Query: 358 LEQIDAGNYSC 368
E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 69/191 (36%), Gaps = 28/191 (14%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDI-TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
P FIK+P D + + + + C A G P P W K+ + I+
Sbjct: 7 PVFIKKPVDQI------GVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---- 56
Query: 522 KRFTLSGGNLIINDP-RQVEDRGSYHCKASNKFGSIISESV-------QLAFGFIGEFNL 573
F S G ++ P R D Y C A N G + + QL GF N+
Sbjct: 57 --FDESAGAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFP---NI 111
Query: 574 KRAPEIG--NQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 630
P++ + M C N P W +D+ P + + R+ G L +
Sbjct: 112 DMGPQLKVVERTRTATMLCAASGN-PDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIES 170
Query: 631 LEQIDAGNYSC 641
E+ D G Y C
Sbjct: 171 SEETDQGKYEC 181
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRG 270
T+ C A G P+P WFK D++ +DP S+ R L G L I + D+G
Sbjct: 127 TMLCAASGNPDPEITWFK-DFLP-------VDPSTSNGRIKQLRSGGLQIESSEET-DQG 177
Query: 271 SYHCKASNKFG 281
Y C ASN G
Sbjct: 178 KYECVASNSAG 188
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRG 543
T+ C A G P+P WFK D++ +DP S+ R L G L I + D+G
Sbjct: 127 TMLCAASGNPDPEITWFK-DFLP-------VDPSTSNGRIKQLRSGGLQIESSEET-DQG 177
Query: 544 SYHCKASNKFG 554
Y C ASN G
Sbjct: 178 KYECVASNSAG 188
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 13/126 (10%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKV-EDQGEY 739
+G C A G P P W ++G + + E+ +L I ++ D+ Y
Sbjct: 20 SGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIY 79
Query: 740 ICRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 792
C A N + +++ E PN + K ++ T C A G PD
Sbjct: 80 ECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPE 139
Query: 793 YSWFRN 798
+WF++
Sbjct: 140 ITWFKD 145
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 682 EAPKAGDKVRLECVAFGYPVPSYN--WTR-RGSPLPRNAYFENFNRILTIPNVKVEDQGE 738
++ + G V C A P+Y WTR LP A +FN ILTI NV+ D G
Sbjct: 20 QSVRPGADVTFICTA-KSKSPAYTLVWTRLHNGKLPSRAM--DFNGILTIRNVQPSDAGT 76
Query: 739 YICRASNDRSALESSVTISIQ 759
Y+C SN + + + T+ +Q
Sbjct: 77 YVCTGSNMFAMDQGTATLHVQ 97
>pdb|3CII|G Chain G, Structure Of Nkg2aCD94 BOUND TO HLA-E
pdb|3CII|I Chain I, Structure Of Nkg2aCD94 BOUND TO HLA-E
Length = 121
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C + WV YR +CY F+ S KT N+++ C S S L + + DE F+ Q+
Sbjct: 3 CQEKWVGYRCNCY-FISSEQKTWNESRHLCASQKSSLLQLQNTDELDFM------SSSQQ 55
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLNE 113
W + W+ E+G+ L++
Sbjct: 56 FYWIGLSYSEEHTAWLWENGSALSQ 80
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 59/172 (34%), Gaps = 34/172 (19%)
Query: 216 CYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL------SGGNLIINDPRQVEDR 269
C A G P P W K+ +S++RF + SG L I R D
Sbjct: 28 CQATGDPRPKIVWNKKG-----------KKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDE 76
Query: 270 GSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA-PEIG--------NQNWGKAMFCDPP 320
Y C ASN G I SV + E + R P I + M C
Sbjct: 77 AIYECVASNNVGEI---SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAAS 133
Query: 321 TNYPGVNYYWARDYFP----NFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
N P W +D+ P N K++ GAL E+ D G Y C
Sbjct: 134 GN-PDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 59/172 (34%), Gaps = 34/172 (19%)
Query: 489 CYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL------SGGNLIINDPRQVEDR 542
C A G P P W K+ +S++RF + SG L I R D
Sbjct: 28 CQATGDPRPKIVWNKKG-----------KKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDE 76
Query: 543 GSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA-PEIG--------NQNWGKAMFCDPP 593
Y C ASN G I SV + E + R P I + M C
Sbjct: 77 AIYECVASNNVGEI---SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAAS 133
Query: 594 TNYPGVNYYWARDYFP----NFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 641
N P W +D+ P N K++ GAL E+ D G Y C
Sbjct: 134 GN-PDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 694 CVAFGYPVPSYNWTRRGSPLPRNAYFE------NFNRILTIPNVKV-EDQGEYICRASND 746
C A G P P W ++G + N FE +L I ++ D+ Y C ASN+
Sbjct: 28 CQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNN 86
Query: 747 RSALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 798
+ S +++ E P + K ++ T C A G PD +WF++
Sbjct: 87 VGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD 145
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 184 DKIPRG-PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVAN- 241
D+IPRG P P V + ++ + T+ C A G P+P WFK+ D N
Sbjct: 102 DQIPRGFPTIDMGPQLKVVERTRTA-----TMLCAASGNPDPEITWFKDFLPVDTSNNNG 156
Query: 242 LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
I L + G L I + D+G Y C A+N G+ S L
Sbjct: 157 RIKQLRSESI----GALQIEQSEE-SDQGKYECVATNSAGTRYSAPANL 200
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVAN-LIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
T+ C A G P+P WFK+ D N I L + G L I + D+G
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESI----GALQIEQSEE-SDQGK 181
Query: 545 YHCKASNKFGSIISESVQL 563
Y C A+N G+ S L
Sbjct: 182 YECVATNSAGTRYSAPANL 200
>pdb|1HQ8|A Chain A, Crystal Structure Of The Murine Nk Cell-Activating
Receptor Nkg2d At 1.95 A
pdb|1JSK|A Chain A, Crystal Structure Of Murine Nk Cell Ligand Rae-1 Beta In
Complex With Nkg2d
pdb|1JSK|B Chain B, Crystal Structure Of Murine Nk Cell Ligand Rae-1 Beta In
Complex With Nkg2d
Length = 123
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 13/102 (12%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP +W+ +R++CY+F KT N ++ +C S +S L + +E F+
Sbjct: 6 CPNNWICHRNNCYQFFNEE-KTWNQSQASCLSQNSSLLKIYSKEEQDFLKL--------V 56
Query: 89 RKWYFGGTQQSP--NLWVNEDGTNL--NELDAAFLPEPADNV 126
+ +++ G Q P W EDG++L N+L +P+ + V
Sbjct: 57 KSYHWMGLVQIPANGSWQWEDGSSLSYNQLTLVEIPKGSCAV 98
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRA 743
G+ + + C A G P P W + L ++ ++ NR LTI V+ ED+G Y C+A
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQA 83
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 207 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--NLIINDPR 264
SI I +SC A G P P WFK++ + LV D L G NL I R
Sbjct: 23 SIGESIEVSCTASGNPPPQIMWFKDN---ETLV-------EDSGIVLKDGNRNLTIRRVR 72
Query: 265 QVEDRGSYHCKASNKFG 281
+ ED G Y C+A + G
Sbjct: 73 K-EDEGLYTCQACSVLG 88
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 480 SILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--NLIINDPR 537
SI I +SC A G P P WFK++ + LV D L G NL I R
Sbjct: 23 SIGESIEVSCTASGNPPPQIMWFKDN---ETLV-------EDSGIVLKDGNRNLTIRRVR 72
Query: 538 QVEDRGSYHCKASNKFG 554
+ ED G Y C+A + G
Sbjct: 73 K-EDEGLYTCQACSVLG 88
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 51/138 (36%), Gaps = 23/138 (16%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
+L ++ D GNY+C V++K + L+ PH Q P N
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL---- 236
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSP---LPRNAYFENFNR---ILT 727
G V C + P W + G+P + + A ++ +L+
Sbjct: 237 --GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLS 294
Query: 728 IPNVKVEDQGEYICRASN 745
+ NV ED GEY C A N
Sbjct: 295 LHNVTFEDAGEYTCLAGN 312
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 457 NVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQDRLVAN 514
V PY+ + P + L N + C A G P PS W K ++ + +
Sbjct: 114 GVDTGAPYWTR-PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 172
Query: 515 LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
+ L ++++L +++ +D RG+Y C NKFGSI
Sbjct: 173 I--KLRHQQWSLVMESVVPSD------RGNYTCVVENKFGSI 206
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C A G P PS W K ++ + + + L ++++L +++ +D
Sbjct: 139 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGI--KLRHQQWSLVMESVVPSD----- 191
Query: 268 DRGSYHCKASNKFGSI 283
RG+Y C NKFGSI
Sbjct: 192 -RGNYTCVVENKFGSI 206
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 673 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------- 725
P K P A + VR C A G P PS +W + G F +RI
Sbjct: 125 PERMDKKLLAVP-AANTVRFRCPAAGNPTPSISWLKNGR------EFRGEHRIGGIKLRH 177
Query: 726 ----LTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
L + +V D+G Y C N ++ + T+ +
Sbjct: 178 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 214
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
+L ++ D GNY+C V++K + L+ PH Q P N
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL---- 236
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR 435
G V C + P W +
Sbjct: 237 --GSDVEFHCKVYSDAQPHIQWLK 258
>pdb|3BDW|A Chain A, Human Cd94NKG2A
pdb|3BDW|C Chain C, Human Cd94NKG2A
pdb|3CDG|J Chain J, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CDG|E Chain E, Human Cd94NKG2A IN COMPLEX WITH HLA-E
Length = 123
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C + WV YR +CY F+ S KT N+++ C S S L + + DE F+ Q+
Sbjct: 5 CQEKWVGYRCNCY-FISSEQKTWNESRHLCASQKSSLLQLQNTDELDFM------SSSQQ 57
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLNE 113
W + W+ E+G+ L++
Sbjct: 58 FYWIGLSYSEEHTAWLWENGSALSQ 82
>pdb|1VSC|A Chain A, Vcam-1
pdb|1VSC|B Chain B, Vcam-1
Length = 196
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 678 KTFPEA---PKAGDKVRLECVAFGYPVPSYNW-TRRGSPLPRNAYFENFNRILTIPNVKV 733
+T PE+ + GD V L C G P ++W T+ SPL E LT+ V
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSF 63
Query: 734 EDQGEYICRASNDRSALESSVTISIQAEP 762
++ Y+C A+ + LE + + I + P
Sbjct: 64 GNEHSYLCTATCESRKLEKGIQVEIYSFP 92
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 22/152 (14%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
+L ++ D GNY+C V++K + L+ PH Q P N
Sbjct: 73 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL---- 128
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSP---LPRNAYFENF--NRILTI 728
G V C + P W + G+P + ++ E+ + L +
Sbjct: 129 --GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186
Query: 729 PNVKVEDQGEYICRASNDRSALESSVTISIQA 760
NV D GEY+CRA+N E + +S+
Sbjct: 187 ANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 457 NVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQDRLVAN 514
V PY+ + P + L N + C A G P PS W K ++ + +
Sbjct: 6 GVDTGAPYWTR-PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 64
Query: 515 LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
+ L ++++L +++ +D RG+Y C NKFGSI
Sbjct: 65 I--KLRHQQWSLVMESVVPSD------RGNYTCVVENKFGSI 98
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C A G P PS W K ++ + + + L ++++L +++ +D
Sbjct: 31 NTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGI--KLRHQQWSLVMESVVPSD----- 83
Query: 268 DRGSYHCKASNKFGSI 283
RG+Y C NKFGSI
Sbjct: 84 -RGNYTCVVENKFGSI 98
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 673 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------- 725
P K P A + VR C A G P PS +W + G F +RI
Sbjct: 17 PERMDKKLLAVP-AANTVRFRCPAAGNPTPSISWLKNGRE------FRGEHRIGGIKLRH 69
Query: 726 ----LTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
L + +V D+G Y C N ++ + T+ +
Sbjct: 70 QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 106
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 352 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
+L ++ D GNY+C V++K + L+ PH Q P N
Sbjct: 73 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL---- 128
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR 435
G V C + P W +
Sbjct: 129 --GSDVEFHCKVYSDAQPHIQWLK 150
>pdb|1IJ9|A Chain A, Highly Hydrated Human Vcam-1 Fragment
Length = 196
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 678 KTFPEA---PKAGDKVRLECVAFGYPVPSYNW-TRRGSPLPRNAYFENFNRILTIPNVKV 733
+T PE+ + GD V L C G P ++W T+ SPL E LT+ V
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSF 63
Query: 734 EDQGEYICRASNDRSALESSVTISIQAEP 762
++ Y+C A+ + LE + + I + P
Sbjct: 64 GNEHSYLCTATCESRKLEKGIQVEIYSFP 92
>pdb|1B6E|A Chain A, Human Cd94
Length = 128
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C + WV YR +CY F+ S KT N+++ C S S L + + DE F+ Q+
Sbjct: 10 CQEKWVGYRCNCY-FISSEQKTWNESRHLCASQKSSLLQLQNTDELDFM------SSSQQ 62
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLNE 113
W + W+ E+G+ L++
Sbjct: 63 FYWIGLSYSEEHTAWLWENGSALSQ 87
>pdb|2RCJ|C Chain C, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|D Chain D, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|G Chain G, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|H Chain H, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|K Chain K, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|L Chain L, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|O Chain O, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|P Chain P, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|S Chain S, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|T Chain T, Solution Structure Of Human Immunoglobulin M
Length = 523
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 82/380 (21%), Positives = 127/380 (33%), Gaps = 76/380 (20%)
Query: 469 PTDVVFDLSKRSI-LNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL 526
PT +F S + N TL C YP +K D + P
Sbjct: 115 PTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKY 174
Query: 527 SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV---QLAFGFIGEFNLKRAPEIGNQN 583
+ + + P Q + SY C+ +++ GS + ++V + + G AP + +
Sbjct: 175 AASSYLSLTPEQWKSHRSYSCQVTHE-GSTVEKTVAPTECSASTKGPSVFPLAPSSKSTS 233
Query: 584 WGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA------ 636
G A C +DYFP V G F A+ Q
Sbjct: 234 GGTAALGC------------LVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSS 281
Query: 637 -----------GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 685
Y CNV K S+T + PL + P F PK
Sbjct: 282 VVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPL---------------SLPSVFLFPPK 326
Query: 686 AGDKVRLE------CVAFGY----PVPSYNWTRRGSPL------PRNAYFENFNRILTIP 729
D + + CV P +NW G + PR + + R++++
Sbjct: 327 PKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVL 386
Query: 730 NVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FTIPLTDKHM-DNQADLT 780
V + D EY C+ SN TIS + +P +T+P + + M NQ LT
Sbjct: 387 TVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLT 446
Query: 781 WTCEAFGVPDVTYSWFRNGE 800
+ F D+ W NG+
Sbjct: 447 CLVKGFYPSDIAVEWESNGQ 466
>pdb|1VCA|A Chain A, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
pdb|1VCA|B Chain B, Crystal Structure Of An Integrin-Binding Fragment Of
Vascular Cell Adhesion Molecule-1 At 1.8 Angstroms
Resolution
Length = 202
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 678 KTFPEA---PKAGDKVRLECVAFGYPVPSYNW-TRRGSPLPRNAYFENFNRILTIPNVKV 733
+T PE+ + GD V L C G P ++W T+ SPL E LT+ V
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSF 63
Query: 734 EDQGEYICRASNDRSALESSVTISIQAEP 762
++ Y+C A+ + LE + + I + P
Sbjct: 64 GNEHSYLCTATCESRKLEKGIQVEIYSFP 92
>pdb|3T3A|A Chain A, Crystal Structure Of H107r Mutant Of Extracellular Domain
Of Mouse Receptor Nkr-P1a
pdb|3T3A|B Chain B, Crystal Structure Of H107r Mutant Of Extracellular Domain
Of Mouse Receptor Nkr-P1a
Length = 139
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM------Y 79
+L CPQ W+ +RD C+R V T + ++C + L + D +E F++ Y
Sbjct: 3 KLECPQDWLSHRDKCFR-VSQVSNTWEEGLVDCDGKGATLMLIQDQEELRFLLDSIKEKY 61
Query: 80 QLFW------QDPQRRKWYFGGTQQSPNLWVNEDGTN 110
FW KW G T S L + D N
Sbjct: 62 NSFWIGLRYTLPDMNWKWINGSTLNSDVLKITGDTEN 98
>pdb|3BDW|B Chain B, Human Cd94NKG2A
pdb|3BDW|D Chain D, Human Cd94NKG2A
pdb|3CDG|K Chain K, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CDG|F Chain F, Human Cd94NKG2A IN COMPLEX WITH HLA-E
pdb|3CII|H Chain H, Structure Of Nkg2aCD94 BOUND TO HLA-E
pdb|3CII|J Chain J, Structure Of Nkg2aCD94 BOUND TO HLA-E
Length = 120
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP+ W+ Y +SCY ++ +T ++ L C S +S L ++++ +E F+
Sbjct: 7 CPEEWITYSNSCY-YIGKERRTWEESLLACTSKNSSLLSIDNEEEMKFL 54
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 741
G R +C GYP P W + +P+ + +F E N LTI V +D +Y C
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 742 RASNDRSALESSVTISIQAE 761
+A N S E++ T + E
Sbjct: 116 KAVN--SLGEATCTAELLVE 133
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 28/106 (26%)
Query: 456 PNVKMRGPYFIKQPTD--VVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 513
P+VK PYF K D VV + R C GYP+P WFK+D
Sbjct: 38 PHVK---PYFTKTILDMEVVEGSAAR-------FDCKVEGYPDPEVMWFKDD-------- 79
Query: 514 NLIDPLSDKR-----FTLSGGNLIINDPRQVEDRGSYHCKASNKFG 554
+P+ + R + G + +D Y CKA N G
Sbjct: 80 ---NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 25/99 (25%)
Query: 190 PYFIKQPTD--VVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
PYF K D VV + R C GYP+P WFK+D +P+
Sbjct: 42 PYFTKTILDMEVVEGSAAR-------FDCKVEGYPDPEVMWFKDD-----------NPVK 83
Query: 248 DKR-----FTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281
+ R + G + +D Y CKA N G
Sbjct: 84 ESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 741
G R +C GYP P W + +P+ + +F E N LTI V +D +Y C
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 742 RASNDRSALESSVTISIQAE 761
+A N S E++ T + E
Sbjct: 116 KAVN--SLGEATCTAELLVE 133
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 24/104 (23%)
Query: 456 PNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 515
P+VK PYF K D+ D+ + S C GYP+P WFK+D
Sbjct: 38 PHVK---PYFTKTILDM--DVVEGSAAR---FDCKVEGYPDPEVMWFKDD---------- 79
Query: 516 IDPLSDKR-----FTLSGGNLIINDPRQVEDRGSYHCKASNKFG 554
+P+ + R + G + +D Y CKA N G
Sbjct: 80 -NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 21/97 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
PYF K D+ D+ + S C GYP+P WFK+D +P+ +
Sbjct: 42 PYFTKTILDM--DVVEGSAAR---FDCKVEGYPDPEVMWFKDD-----------NPVKES 85
Query: 250 R-----FTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281
R + G + +D Y CKA N G
Sbjct: 86 RHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 23/141 (16%)
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
D GNY+C V+++ ++ PH Q P N KT G V C
Sbjct: 84 DKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPAN--KTV----ALGSNVEFMC 137
Query: 695 VAFGYPVPSYNWTRR----GSPL-PRNAYFENFNR------------ILTIPNVKVEDQG 737
+ P P W + GS + P N + + +L + NV ED G
Sbjct: 138 KVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAG 197
Query: 738 EYICRASNDRSALESSVTISI 758
EY C A N S +++
Sbjct: 198 EYTCLAGNSIGLSHHSAWLTV 218
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 179 DIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQD 236
D P+++P PY+ P + L + C + G P P+ W K +++ D
Sbjct: 2 DNTKPNRMPVAPYWT-SPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPD 60
Query: 237 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
+ + T S II D D+G+Y C N++GSI
Sbjct: 61 HRIGGY----KVRYATWS----IIMDSVVPSDKGNYTCIVENEYGSI 99
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 454 TIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQDRL 511
T PN PY+ P + L + C + G P P+ W K +++ D
Sbjct: 4 TKPNRMPVAPYWT-SPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHR 62
Query: 512 VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
+ + T S II D D+G+Y C N++GSI
Sbjct: 63 IGGY----KVRYATWS----IIMDSVVPSDKGNYTCIVENEYGSI 99
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 11/139 (7%)
Query: 673 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-----ILT 727
P K P A V+ +C + G P P+ W + G + + +
Sbjct: 18 PEKMEKKLHAVP-AAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSII 76
Query: 728 IPNVKVEDQGEYICRASNDRSALESSVTIS-IQAEPNFTIPL----TDKHMDNQADLTWT 782
+ +V D+G Y C N+ ++ + + ++ P+ I +K + +++ +
Sbjct: 77 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 136
Query: 783 CEAFGVPDVTYSWFRNGEL 801
C+ + P W ++ E+
Sbjct: 137 CKVYSDPQPHIQWLKHIEV 155
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 23/141 (16%)
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
D GNY+C V+++ ++ PH Q P N KT G V C
Sbjct: 85 DKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPAN--KTV----ALGSNVEFMC 138
Query: 695 VAFGYPVPSYNWTRR----GSPL-PRNAYFENFNR------------ILTIPNVKVEDQG 737
+ P P W + GS + P N + + +L + NV ED G
Sbjct: 139 KVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAG 198
Query: 738 EYICRASNDRSALESSVTISI 758
EY C A N S +++
Sbjct: 199 EYTCLAGNSIGLSHHSAWLTV 219
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 179 DIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQD 236
D P+++P PY+ P + L + C + G P P+ W K +++ D
Sbjct: 3 DNTKPNRMPVAPYWT-SPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPD 61
Query: 237 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
+ + T S II D D+G+Y C N++GSI
Sbjct: 62 HRIGGY----KVRYATWS----IIMDSVVPSDKGNYTCIVENEYGSI 100
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 454 TIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQDRL 511
T PN PY+ P + L + C + G P P+ W K +++ D
Sbjct: 5 TKPNRMPVAPYWT-SPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHR 63
Query: 512 VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
+ + T S II D D+G+Y C N++GSI
Sbjct: 64 IGGY----KVRYATWS----IIMDSVVPSDKGNYTCIVENEYGSI 100
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 11/139 (7%)
Query: 673 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-----ILT 727
P K P A V+ +C + G P P+ W + G + + +
Sbjct: 19 PEKMEKKLHAVP-AAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSII 77
Query: 728 IPNVKVEDQGEYICRASNDRSALESSVTIS-IQAEPNFTIPL----TDKHMDNQADLTWT 782
+ +V D+G Y C N+ ++ + + ++ P+ I +K + +++ +
Sbjct: 78 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 137
Query: 783 CEAFGVPDVTYSWFRNGEL 801
C+ + P W ++ E+
Sbjct: 138 CKVYSDPQPHIQWLKHIEV 156
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 23/141 (16%)
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
D GNY+C V+++ ++ PH Q P N KT G V C
Sbjct: 84 DKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPAN--KTV----ALGSNVEFMC 137
Query: 695 VAFGYPVPSYNWTRR----GSPL-PRNAYFENFNR------------ILTIPNVKVEDQG 737
+ P P W + GS + P N + + +L + NV ED G
Sbjct: 138 KVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAG 197
Query: 738 EYICRASNDRSALESSVTISI 758
EY C A N S +++
Sbjct: 198 EYTCLAGNSIGLSHHSAWLTV 218
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 179 DIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQD 236
D P+++P PY+ P + L + C + G PNP+ W K +++ D
Sbjct: 2 DNTKPNRMPVAPYWT-SPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPD 60
Query: 237 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
+ + T S II D D+G+Y C N++GSI
Sbjct: 61 HRIGGY----KVRYATWS----IIMDSVVPSDKGNYTCIVENEYGSI 99
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 454 TIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK--EDYVQDRL 511
T PN PY+ P + L + C + G PNP+ W K +++ D
Sbjct: 4 TKPNRMPVAPYWT-SPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHR 62
Query: 512 VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
+ + T S II D D+G+Y C N++GSI
Sbjct: 63 IGGY----KVRYATWS----IIMDSVVPSDKGNYTCIVENEYGSI 99
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 11/139 (7%)
Query: 673 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-----ILT 727
P K P A V+ +C + G P P+ W + G + + +
Sbjct: 18 PEKMEKKLHAVP-AAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSII 76
Query: 728 IPNVKVEDQGEYICRASNDRSALESSVTIS-IQAEPNFTIPL----TDKHMDNQADLTWT 782
+ +V D+G Y C N+ ++ + + ++ P+ I +K + +++ +
Sbjct: 77 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 136
Query: 783 CEAFGVPDVTYSWFRNGEL 801
C+ + P W ++ E+
Sbjct: 137 CKVYSDPQPHIQWLKHIEV 155
>pdb|1DV8|A Chain A, Crystal Structure Of The Carbohydrate Recognition Domain
Of The H1 Subunit Of The Asialoglycoprotein Receptor
Length = 128
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP +WV++ SCY F +S K DA C+ D+ L V +E F+ + +
Sbjct: 1 CPVNWVEHERSCYWFSRSG-KAWADADNYCRLEDAHLVVVTSWEEQKFVQHHI----GPV 55
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADN 125
W Q P WV DGT+ + PE D+
Sbjct: 56 NTWMGLHDQNGPWKWV--DGTDYETGFKNWRPEQPDD 90
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 19/129 (14%)
Query: 688 DKVRLECVAFGYPVPSYNWT-RRGSPLPRNAYFENF-----NRI------LTIPNVKVED 735
+ ++L C G+ P W +GS Y +R+ +T +V +D
Sbjct: 17 ESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKD 76
Query: 736 QGEYICRASNDRSALESSVTISIQ-----AEPNFTIPLTDKHMDNQADLTWTCEAFGVPD 790
GEY C S + V+I + ++P ++P + + N+A LT + E G P
Sbjct: 77 NGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVP-SSVTIGNRAVLTCS-EHDGSPP 134
Query: 791 VTYSWFRNG 799
YSWF++G
Sbjct: 135 SEYSWFKDG 143
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 204 SKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLII 260
S +I N L+C G P Y WFK+ A + FT+ G+LI
Sbjct: 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIF 173
Query: 261 NDPRQVEDRGSYHCKASNKFGSII-SESVQL 290
DP D G Y+C+A N +G+ + SE+ +
Sbjct: 174 -DPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 477 SKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLII 533
S +I N L+C G P Y WFK+ A + FT+ G+LI
Sbjct: 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIF 173
Query: 534 NDPRQVEDRGSYHCKASNKFGSII-SESVQL 563
DP D G Y+C+A N +G+ + SE+ +
Sbjct: 174 -DPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 36.2 bits (82), Expect = 0.084, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 27/180 (15%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVA------NLIDPLSDKRFTLSGGNLIINDPRQ 265
I L+C G+ +P EW +VQ A + P +D R T S + + +
Sbjct: 19 IKLTCTYSGFSSPRVEW---KFVQGSTTALVCYNSQITAPYAD-RVTFSSSGITFSSVTR 74
Query: 266 VEDRGSYHCKASNKFGSIISE-SVQLAFGFIGE---FNLKRAPEIGNQNWGKAMFCDPPT 321
+D G Y C S + G E S+ L ++ + IGN+ + C
Sbjct: 75 -KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR---AVLTCSEHD 130
Query: 322 NYPGVNYYWARDYFPNFVEEDK--RVFVSYD-------GALYFSALEQIDAGNYSCNVQS 372
P Y W +D + K R F++ G L F + D+G Y C Q+
Sbjct: 131 GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQN 190
Score = 36.2 bits (82), Expect = 0.084, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 27/180 (15%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVA------NLIDPLSDKRFTLSGGNLIINDPRQ 538
I L+C G+ +P EW +VQ A + P +D R T S + + +
Sbjct: 19 IKLTCTYSGFSSPRVEW---KFVQGSTTALVCYNSQITAPYAD-RVTFSSSGITFSSVTR 74
Query: 539 VEDRGSYHCKASNKFGSIISE-SVQLAFGFIGE---FNLKRAPEIGNQNWGKAMFCDPPT 594
+D G Y C S + G E S+ L ++ + IGN+ + C
Sbjct: 75 -KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR---AVLTCSEHD 130
Query: 595 NYPGVNYYWARDYFPNFVEEDK--RVFVSYD-------GALYFSALEQIDAGNYSCNVQS 645
P Y W +D + K R F++ G L F + D+G Y C Q+
Sbjct: 131 GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQN 190
>pdb|3GPR|D Chain D, Crystal Structure Of Rhodocetin
Length = 124
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFI 77
CP HW Y CYR V S LKT DA+ C + S LA+++ +E F+
Sbjct: 1 CPLHWSSYNGYCYR-VFSELKTWEDAESFCYAQHKGSRLASIHSREEEAFV 50
>pdb|3M9Z|A Chain A, Crystal Structure Of Extracellular Domain Of Mouse Nkr-P1a
Length = 139
Score = 37.4 bits (85), Expect = 0.032, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM------Y 79
+L CPQ W+ +RD C+ V T + ++C + L + D +E F++ Y
Sbjct: 3 KLECPQDWLSHRDKCFH-VSQVSNTWEEGLVDCDGKGATLMLIQDQEELRFLLDSIKEKY 61
Query: 80 QLFW------QDPQRRKWYFGGTQQSPNLWVNEDGTN 110
FW KW G T S L + D N
Sbjct: 62 NSFWIGLRYTLPDMNWKWINGSTLNSDVLKITGDTEN 98
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 22/89 (24%)
Query: 680 FPEAPKA-----GDKVRLECVAFGYPVPSYNWTRRG-------------SPLPR----NA 717
F +AP + G V L C A G PVP W G + L R
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHAT 83
Query: 718 YFENFNRILTIPNVKVEDQGEYICRASND 746
Y ++ ++I + ED G Y CRASND
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRASND 112
Score = 37.0 bits (84), Expect = 0.047, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 186 IPRGPY---FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
+PRG + F++ P +R + + L C A G P P +W+ E + + + L
Sbjct: 15 VPRGSHMAGFVQAPLS-----QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQL 69
Query: 243 IDPLSDKR------FTLSGGNLIINDPRQVEDRGSYHCKASN 278
D R + + I D ED G+Y C+ASN
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 465 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR- 523
F++ P +R + + L C A G P P +W+ E + + + L D R
Sbjct: 24 FVQAPLS-----QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 524 -----FTLSGGNLIINDPRQVEDRGSYHCKASN 551
+ + I D ED G+Y C+ASN
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 21/136 (15%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
+L ++ D GNY+C V+++ ++ PH Q P N
Sbjct: 77 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV---- 132
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN----RILTIP 729
G V C + P W + G P + N +L +
Sbjct: 133 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 730 NVKVEDQGEYICRASN 745
NV D GEYIC+ SN
Sbjct: 191 NVTEADAGEYICKVSN 206
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 209 LNDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 266
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 34 FNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVP 85
Query: 267 EDRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 86 SDKGNYTCVVENEYGSI 102
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 482 LNDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 539
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 34 FNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVP 85
Query: 540 EDRGSYHCKASNKFGSI 556
D+G+Y C N++GSI
Sbjct: 86 SDKGNYTCVVENEYGSI 102
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 688 DKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICR 742
+ V+ C A G P+P+ W + G + N + L + +V D+G Y C
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94
Query: 743 ASNDRSALESSVTISI 758
N+ ++ + + +
Sbjct: 95 VENEYGSINHTYHLDV 110
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 46/139 (33%), Gaps = 23/139 (16%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
+L ++ D GNY+C V+++ ++ +PH Q P N
Sbjct: 69 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVV---- 124
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN------RILT 727
G V C + P W + G P + N +L
Sbjct: 125 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 182
Query: 728 IPNVKVEDQGEYICRASND 746
I NV ED GEY C A N
Sbjct: 183 IRNVTFEDAGEYTCLAGNS 201
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 78
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 79 DKGNYTCVVENEYGSI 94
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 483 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 78
Query: 541 DRGSYHCKASNKFGSI 556
D+G+Y C N++GSI
Sbjct: 79 DKGNYTCVVENEYGSI 94
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQ 736
A A + V+ C A G P+P+ W + G + N + L + +V D+
Sbjct: 21 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 737 GEYICRASNDRSALESSVTISI 758
G Y C N+ ++ + + +
Sbjct: 81 GNYTCVVENEYGSINHTYHLDV 102
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 37.0 bits (84), Expect = 0.041, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 22/89 (24%)
Query: 680 FPEAPKA-----GDKVRLECVAFGYPVPSYNWTRRG-------------SPLPR----NA 717
F +AP + G V L C A G PVP W G + L R
Sbjct: 24 FVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHAT 83
Query: 718 YFENFNRILTIPNVKVEDQGEYICRASND 746
Y ++ ++I + ED G Y CRASND
Sbjct: 84 YHQHAASTISIDTLVEEDTGTYECRASND 112
Score = 36.6 bits (83), Expect = 0.064, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 186 IPRGPY---FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
+PRG + F++ P +R + + L C A G P P +W+ E + + + L
Sbjct: 15 VPRGSHXAGFVQAPLS-----QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQL 69
Query: 243 IDPLSDKR------FTLSGGNLIINDPRQVEDRGSYHCKASN 278
D R + + I D ED G+Y C+ASN
Sbjct: 70 WDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
Score = 32.7 bits (73), Expect = 0.84, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 465 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR- 523
F++ P +R + + L C A G P P +W+ E + + + L D R
Sbjct: 24 FVQAPLS-----QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRV 78
Query: 524 -----FTLSGGNLIINDPRQVEDRGSYHCKASN 551
+ + I D ED G+Y C+ASN
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASN 111
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 11/121 (9%)
Query: 692 LECVAFGYPVPSYNWTRRGSPLP------RNAYFENFNRILTIPNVKVEDQGEYICRASN 745
L C G+P P W R+G + R F+ L I +V +D Y RA+N
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83
Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-----GVPDVTYSWFRNGE 800
++ + ++ ++ +P T + M L + G PD +W + +
Sbjct: 84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD 143
Query: 801 L 801
L
Sbjct: 144 L 144
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 11/121 (9%)
Query: 692 LECVAFGYPVPSYNWTRRGSPLP------RNAYFENFNRILTIPNVKVEDQGEYICRASN 745
L C G+P P W R+G + R F+ L I +V +D Y RA+N
Sbjct: 22 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 81
Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-----GVPDVTYSWFRNGE 800
++ + ++ ++ +P T + M L + G PD +W + +
Sbjct: 82 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD 141
Query: 801 L 801
L
Sbjct: 142 L 142
>pdb|2OX8|A Chain A, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|B Chain B, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|C Chain C, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain.
pdb|2OX8|D Chain D, Human Scavenger Receptor C-Type Lectin Carbohydrate-
Recognition Domain
Length = 140
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP HW + D CY F + DAKL C+ S L +N +E +I Q+ +
Sbjct: 5 CPPHWKNFTDKCYYFSVEK-EIFEDAKLFCEDKSSHLVFINTREEQQWIKKQMV---GRE 60
Query: 89 RKWYFGGTQQSPNLWVNEDGTN 110
W + N W DGT+
Sbjct: 61 SHWIGLTDSERENEWKWLDGTS 82
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 36.6 bits (83), Expect = 0.058, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 674 NNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPL-PRNAY----FENFN 723
+ F F +AP + G R++C G P P +W G P+ P +A+ EN
Sbjct: 6 SGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE 761
L I V D G Y C A+N S+ + + A+
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F++ P D+ K + C G P P W +L + P S
Sbjct: 10 PHFLQAPGDLTVQEGKLC-----RMDCKVSGLPTPDLSW--------QLDGKPVRPDSAH 56
Query: 250 RFTL--SGGNLIINDPRQVEDRGSYHCKASNKFG 281
+ + +G + +I +P D G Y C A+N+ G
Sbjct: 57 KMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG 90
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P+F++ P D+ K + C G P P W +L + P S
Sbjct: 10 PHFLQAPGDLTVQEGKLC-----RMDCKVSGLPTPDLSW--------QLDGKPVRPDSAH 56
Query: 523 RFTL--SGGNLIINDPRQVEDRGSYHCKASNKFG 554
+ + +G + +I +P D G Y C A+N+ G
Sbjct: 57 KMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG 90
>pdb|3VLG|A Chain A, Crystal Structure Of The W150a Mutant Lox-1 Ctld Showing
Impaired Oxldl Binding
Length = 145
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CPQ W+ + ++CY F + C SLD+ L +N + FI + +
Sbjct: 16 CPQDWIAHGENCYLFSSGSFNWEKSQE-KCLSLDAKLLKINSTADLDFIQQAISYSS--- 71
Query: 89 RKWYFGGTQQSPNL-WVNEDGTNL 111
++ G ++++P+ W+ EDG+ L
Sbjct: 72 FPFWMGLSRRNPSYPWLWEDGSPL 95
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 214 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIIN---DPRQVE 267
L C A G+P P+ +W+ + R A+++ P+ + SG G L++ D +
Sbjct: 401 LQCVAAGFPEPTIDWYFCPGTEQRCSASVL-PVDVQTLNSSGPPFGKLVVQSSIDSSAFK 459
Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIG 296
G+ CKA N G S F F G
Sbjct: 460 HNGTVECKAYNDVGKT---SAYFNFAFKG 485
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 487 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIIN---DPRQVE 540
L C A G+P P+ +W+ + R A+++ P+ + SG G L++ D +
Sbjct: 401 LQCVAAGFPEPTIDWYFCPGTEQRCSASVL-PVDVQTLNSSGPPFGKLVVQSSIDSSAFK 459
Query: 541 DRGSYHCKASNKFGSIISESVQLAFGFIG 569
G+ CKA N G S F F G
Sbjct: 460 HNGTVECKAYNDVGKT---SAYFNFAFKG 485
>pdb|2C6U|A Chain A, Crystal Structure Of Human Clec-2 (Clec1b)
Length = 122
Score = 36.2 bits (82), Expect = 0.071, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C +W Y DSCY F + L T ++K C +++ L +++ + +I +
Sbjct: 3 CDTNWRYYGDSCYGFFRHNL-TWEESKQYCTDMNATLLKIDNRNIVEYIKAR-----THL 56
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYL 131
+W Q+S +W EDG+ ++E FL + N+ Y
Sbjct: 57 IRWVGLSRQKSNEVWKWEDGSVISENMFEFLEDGKGNMNCAYF 99
>pdb|3VPP|A Chain A, Crystal Structure Of The Human Clec9a C-Type Lectin-Like
Domain
pdb|3VPP|B Chain B, Crystal Structure Of The Human Clec9a C-Type Lectin-Like
Domain
Length = 132
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------- 81
CP +W+Q R+SCY +V + ++ NC S L + +E FI L
Sbjct: 4 CPNNWIQNRESCY-YVSEIWSIWHTSQENCLKEGSTLLQIESKEEMDFITGSLRKIKGSY 62
Query: 82 -FW----QDPQRRKWYF-GGTQQSPNLWVNEDGTNLNEL 114
+W QD +W + G+ SP L E + N++
Sbjct: 63 DYWVGLSQDGHSGRWLWQDGSSPSPGLLPAERSQSANQV 101
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 214 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIIN---DPRQVE 267
L C A G+P P+ +W+ + R A+++ P+ + SG G L++ D +
Sbjct: 426 LQCVAAGFPEPTIDWYFCPGTEQRCSASVL-PVDVQTLNSSGPPFGKLVVQSSIDSSAFK 484
Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIG 296
G+ CKA N G S F F G
Sbjct: 485 HNGTVECKAYNDVGKT---SAYFNFAFKG 510
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 487 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIIN---DPRQVE 540
L C A G+P P+ +W+ + R A+++ P+ + SG G L++ D +
Sbjct: 426 LQCVAAGFPEPTIDWYFCPGTEQRCSASVL-PVDVQTLNSSGPPFGKLVVQSSIDSSAFK 484
Query: 541 DRGSYHCKASNKFGSIISESVQLAFGFIG 569
G+ CKA N G S F F G
Sbjct: 485 HNGTVECKAYNDVGKT---SAYFNFAFKG 510
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 21/126 (16%)
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
D GNY+C V+++ ++ PH Q P N G V C
Sbjct: 86 DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV------GGDVEFVC 139
Query: 695 VAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN----RILTIPNVKVEDQGEY 739
+ P W + G P + N +L + NV D GEY
Sbjct: 140 KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEY 199
Query: 740 ICRASN 745
IC+ SN
Sbjct: 200 ICKVSN 205
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 34 NTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IXESVVPS 85
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 86 DKGNYTCVVENEYGSI 101
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 483 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 34 NTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IXESVVPS 85
Query: 541 DRGSYHCKASNKFGSI 556
D+G+Y C N++GSI
Sbjct: 86 DKGNYTCVVENEYGSI 101
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYI 740
A + V+ C A G P P+ W + G + N + L +V D+G Y
Sbjct: 32 AANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYT 91
Query: 741 CRASNDRSALESSVTISI 758
C N+ ++ + + +
Sbjct: 92 CVVENEYGSINHTYHLDV 109
>pdb|1YPO|A Chain A, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|B Chain B, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|C Chain C, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|D Chain D, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|E Chain E, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|F Chain F, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|G Chain G, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
pdb|1YPO|H Chain H, Human Oxidized Low Density Lipoprotein Receptor Lox-1 P3 1
21 Space Group
Length = 132
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------F 82
CPQ W+ + ++CY F + C SLD+ L +N + FI + F
Sbjct: 4 CPQDWIWHGENCYLFSSGSFNWEKSQE-KCLSLDAKLLKINSTADLDFIQQAISYSSFPF 62
Query: 83 WQDPQRRKWYFGGTQQSPNLWVNEDGTNL 111
W RR P LW EDG+ L
Sbjct: 63 WMGLSRR------NPSYPWLW--EDGSPL 83
>pdb|2QL1|A Chain A, Structural Characterization Of A Mutated, Adcc-Enhanced
Human Fc Fragment
Length = 225
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V +D EY C+ SN L TIS + +P +T
Sbjct: 69 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPLPEEKTISKAKGQPREPQVYT 128
Query: 766 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + + M NQ LT + F D+ W NG+
Sbjct: 129 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQ 164
>pdb|1ADQ|A Chain A, Crystal Structure Of A Human Igm Rheumatoid Factor Fab In
Complex With Its Autoantigen Igg Fc
Length = 206
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 27/146 (18%)
Query: 680 FPEAPKAGDKV----RLECVAFGY----PVPSYNWTRRGSPL------PRNAYFENFNRI 725
FP PK + + CV P +NW G + PR F + R+
Sbjct: 6 FPPKPKDTLMISRTPEVTCVVVDVSQEDPQVQFNWYVDGVQVHNAKTKPREQQFNSTYRV 65
Query: 726 LTIPNVKVE---DQGEYICRASNDRSALESSVTISIQA------EPN-FTIPLTDKHM-D 774
+++ V + D EY C+ SN L SS+ +I EP +T+P + + M
Sbjct: 66 VSVLTVLHQNWLDGKEYKCKVSN--KGLPSSIEKTISKAKGQPREPQVYTLPPSQEEMTK 123
Query: 775 NQADLTWTCEAFGVPDVTYSWFRNGE 800
NQ LT + F D+ W NG+
Sbjct: 124 NQVSLTCLVKGFYPSDIAVEWESNGQ 149
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 45/139 (32%), Gaps = 23/139 (16%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
+L ++ D GNY+C V+++ ++ PH Q P N
Sbjct: 68 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV---- 123
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN------RILT 727
G V C + P W + G P + N +L
Sbjct: 124 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 181
Query: 728 IPNVKVEDQGEYICRASND 746
I NV ED GEY C A N
Sbjct: 182 IRNVTFEDAGEYTCLAGNS 200
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 26 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 77
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 78 DKGNYTCVVENEYGSI 93
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 483 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 26 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 77
Query: 541 DRGSYHCKASNKFGSI 556
D+G+Y C N++GSI
Sbjct: 78 DKGNYTCVVENEYGSI 93
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQ 736
A A + V+ C A G P+P+ W + G + N + L + +V D+
Sbjct: 20 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 79
Query: 737 GEYICRASNDRSALESSVTISI 758
G Y C N+ ++ + + +
Sbjct: 80 GNYTCVVENEYGSINHTYHLDV 101
>pdb|1YPQ|A Chain A, Human Oxidized Low Density Lipoprotein Receptor Lox-1
Dioxane Complex
pdb|1YPQ|B Chain B, Human Oxidized Low Density Lipoprotein Receptor Lox-1
Dioxane Complex
pdb|1YPU|A Chain A, Human Oxidized Low Density Lipoprotein Receptor Lox-1 C2
Space Group
pdb|1YPU|B Chain B, Human Oxidized Low Density Lipoprotein Receptor Lox-1 C2
Space Group
pdb|1YXK|A Chain A, Crystal Structure Of Human Lectin-Like Oxidized
Low-Density Lipoprotein Receptor 1 (Lox-1)
Disulfide-Linked Dimer
pdb|1YXK|B Chain B, Crystal Structure Of Human Lectin-Like Oxidized
Low-Density Lipoprotein Receptor 1 (Lox-1)
Disulfide-Linked Dimer
Length = 135
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------F 82
CPQ W+ + ++CY F + C SLD+ L +N + FI + F
Sbjct: 9 CPQDWIWHGENCYLFSSGSFNWEKSQE-KCLSLDAKLLKINSTADLDFIQQAISYSSFPF 67
Query: 83 WQDPQRRKWYFGGTQQSPNLWVNEDGTNL 111
W RR P LW EDG+ L
Sbjct: 68 WMGLSRR------NPSYPWLW--EDGSPL 88
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 35.8 bits (81), Expect = 0.100, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 690 VRLECVAFG----YPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYIC 741
VRLE V P WT+ G + + E+ R L +P V++ED GEY+C
Sbjct: 26 VRLERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLC 85
Query: 742 RASNDRSALESSVT 755
++ ++ +VT
Sbjct: 86 EIDDESASFTVTVT 99
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 11/121 (9%)
Query: 692 LECVAFGYPVPSYNWTRRGSPLP------RNAYFENFNRILTIPNVKVEDQGEYICRASN 745
L C G+P P W R+G + R F+ L I +V +D Y RA+N
Sbjct: 24 LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83
Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-----GVPDVTYSWFRNGE 800
++ + ++ ++ +P T + M L + G PD +W + +
Sbjct: 84 QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD 143
Query: 801 L 801
L
Sbjct: 144 L 144
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 45/139 (32%), Gaps = 23/139 (16%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
+L ++ D GNY+C V+++ ++ PH Q P N
Sbjct: 69 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV---- 124
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN------RILT 727
G V C + P W + G P + N +L
Sbjct: 125 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 182
Query: 728 IPNVKVEDQGEYICRASND 746
I NV ED GEY C A N
Sbjct: 183 IRNVTFEDAGEYTCLAGNS 201
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 78
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 79 DKGNYTCVVENEYGSI 94
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 483 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 78
Query: 541 DRGSYHCKASNKFGSI 556
D+G+Y C N++GSI
Sbjct: 79 DKGNYTCVVENEYGSI 94
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQ 736
A A + V+ C A G P+P+ W + G + N + L + +V D+
Sbjct: 21 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 737 GEYICRASNDRSALESSVTISI 758
G Y C N+ ++ + + +
Sbjct: 81 GNYTCVVENEYGSINHTYHLDV 102
>pdb|1YXJ|A Chain A, Crystal Structure Of Human Lectin-like Oxidized
Low-density Lipoprotein Receptor 1 (lox-1) At Low Ph
pdb|1YXJ|B Chain B, Crystal Structure Of Human Lectin-like Oxidized
Low-density Lipoprotein Receptor 1 (lox-1) At Low Ph
Length = 130
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------F 82
CPQ W+ + ++CY F + C SLD+ L +N + FI + F
Sbjct: 3 CPQDWIWHGENCYLFSSGSFNWEKSQE-KCLSLDAKLLKINSTADLDFIQQAISYSSFPF 61
Query: 83 WQDPQRRKWYFGGTQQSPNLWVNEDGTNL 111
W RR P LW EDG+ L
Sbjct: 62 WXGLSRR------NPSYPWLW--EDGSPL 82
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN---LIINDPRQVE 267
D + C + GYP+P + W K ++ V I S + F ++ N L I + + E
Sbjct: 109 DAMMYCKSVGYPHPEWMWRK----KENGVFEEISNSSGRFFIINKENYTELNIVNLQITE 164
Query: 268 DRGSYHCKASNKFGS 282
D G Y C A+N GS
Sbjct: 165 DPGEYECNATNSIGS 179
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN---LIINDPRQVE 540
D + C + GYP+P + W K ++ V I S + F ++ N L I + + E
Sbjct: 109 DAMMYCKSVGYPHPEWMWRK----KENGVFEEISNSSGRFFIINKENYTELNIVNLQITE 164
Query: 541 DRGSYHCKASNKFGS 555
D G Y C A+N GS
Sbjct: 165 DPGEYECNATNSIGS 179
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 706 WTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
WT+ G L +NA N I + ED GEY C + SA +++ TI ++A P
Sbjct: 39 WTKNGVELTATRKNAS----NMEYRINKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAP 93
Query: 763 NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSW 795
+ T ++ + D C++ G P + W
Sbjct: 94 DITGHKRSENKNEGQDAMMYCKSVGYPHPEWMW 126
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL------PRNAYF----ENFNRILTIPNV 731
E G + C + GYP P + W ++ + + +F EN+ L I N+
Sbjct: 102 ENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTE-LNIVNL 160
Query: 732 KV-EDQGEYICRASNDRSALESSVTISIQ 759
++ ED GEY C A+N + S + ++
Sbjct: 161 QITEDPGEYECNATNSIGSASVSTVLRVR 189
>pdb|1MCO|H Chain H, Three-Dimensional Structure Of A Human Immunoglobulin With
A Hinge Deletion
Length = 428
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 34/186 (18%)
Query: 638 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV----RLE 693
Y CNV K S+T + P + L P+ F FP PK + +
Sbjct: 197 TYICNVNHKPSNTKVDKRVAP---------ELLGGPSVF--LFPPKPKDTLMISRTPEVT 245
Query: 694 CVAFGY----PVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVE---DQGEYI 740
CV P +NW G + PR + + R++++ V + D EY
Sbjct: 246 CVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYK 305
Query: 741 CRASNDRSALESSVTIS-IQAEPN----FTIPLTDKHM-DNQADLTWTCEAFGVPDVTYS 794
C+ SN TIS + +P +T+P + + M NQ LT + F D+
Sbjct: 306 CKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVE 365
Query: 795 WFRNGE 800
W NG+
Sbjct: 366 WESNGQ 371
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 11/121 (9%)
Query: 689 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RI----------LTIPNVKVEDQG 737
+V L C A G P+P W R ++ + RI L I +VK+ D G
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 76
Query: 738 EYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 797
Y C A++ + S+ + I+ P F T + + +C+ P + W R
Sbjct: 77 RYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR 136
Query: 798 N 798
+
Sbjct: 137 D 137
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG----GNLIINDPRQVE 267
+TL C A G P P W + D D D R + G +L I D + +
Sbjct: 18 VTLVCDAEGEPIPEITWKR---AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK-LS 73
Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ----NWGK---AMFCDPP 320
D G Y C+A+++ G +S+ L + +F I NQ +W + CD
Sbjct: 74 DSGRYDCEAASRIGG-HQKSMYLDIEYAPKF-------ISNQTIYYSWEGNPINISCDVK 125
Query: 321 TNYPGVNYYWARD 333
+N P + +W RD
Sbjct: 126 SN-PPASIHWRRD 137
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG----GNLIINDPRQVE 540
+TL C A G P P W + D D D R + G +L I D + +
Sbjct: 18 VTLVCDAEGEPIPEITWKR---AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK-LS 73
Query: 541 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ----NWGK---AMFCDPP 593
D G Y C+A+++ G +S+ L + +F I NQ +W + CD
Sbjct: 74 DSGRYDCEAASRIGG-HQKSMYLDIEYAPKF-------ISNQTIYYSWEGNPINISCDVK 125
Query: 594 TNYPGVNYYWARD 606
+N P + +W RD
Sbjct: 126 SN-PPASIHWRRD 137
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 27/141 (19%)
Query: 686 AGDKVRLEC-VAFGYPVPSYNWTRRGSP------------LPR------NAYFENFNRIL 726
AG+ L C V PV W R P PR + EN + +
Sbjct: 17 AGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSI 76
Query: 727 TIPNVKVEDQGEYIC----RASNDRSALESSVT-ISIQAEPNF-TIPLTDKHMDNQADLT 780
+I N+ D G Y C + S D + T +S++A+P+ + Q ++
Sbjct: 77 SISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVS 136
Query: 781 WTCEAFGVP--DVTYSWFRNG 799
+TCE+ G D+T WF+NG
Sbjct: 137 FTCESHGFSPRDITLKWFKNG 157
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 692 LECVAFGYPVPSYNWTRRGSPLP-RNAYFENF-NRILTIPNVKVEDQGEYICRASNDRSA 749
L CVA G PVP+ W + G + +++ + N +L I K+ D G Y C AS
Sbjct: 28 LSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGE 87
Query: 750 LESSVTISIQAEPNFTIPL 768
S I +Q F +P+
Sbjct: 88 ATWSAYIEVQ---EFGVPV 103
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 11/121 (9%)
Query: 689 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RI----------LTIPNVKVEDQG 737
+V L C A G P+P W R ++ + RI L I +VK+ D G
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 76
Query: 738 EYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 797
Y C A++ + S+ + I+ P F T + + +C+ P + W R
Sbjct: 77 RYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR 136
Query: 798 N 798
+
Sbjct: 137 D 137
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG----GNLIINDPRQVE 267
+TL C A G P P W + D D D R + G +L I D + +
Sbjct: 18 VTLVCDAEGEPIPEITWKR---AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK-LS 73
Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ----NWGK---AMFCDPP 320
D G Y C+A+++ G +S+ L + +F I NQ +W + CD
Sbjct: 74 DSGRYDCEAASRIGG-HQKSMYLDIEYAPKF-------ISNQTIYYSWEGNPINISCDVK 125
Query: 321 TNYPGVNYYWARD 333
+N P + +W RD
Sbjct: 126 SN-PPASIHWRRD 137
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 24/133 (18%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG----GNLIINDPRQVE 540
+TL C A G P P W + D D D R + G +L I D + +
Sbjct: 18 VTLVCDAEGEPIPEITWKR---AVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK-LS 73
Query: 541 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ----NWGK---AMFCDPP 593
D G Y C+A+++ G +S+ L + +F I NQ +W + CD
Sbjct: 74 DSGRYDCEAASRIGG-HQKSMYLDIEYAPKF-------ISNQTIYYSWEGNPINISCDVK 125
Query: 594 TNYPGVNYYWARD 606
+N P + +W RD
Sbjct: 126 SN-PPASIHWRRD 137
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 27 NTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IXESVVPS 78
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 79 DKGNYTCVVENEYGSI 94
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 483 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 27 NTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IXESVVPS 78
Query: 541 DRGSYHCKASNKFGSI 556
D+G+Y C N++GSI
Sbjct: 79 DKGNYTCVVENEYGSI 94
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 42/128 (32%), Gaps = 23/128 (17%)
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
D GNY+C V+++ ++ PH Q P N + G V C
Sbjct: 79 DKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPAN------ASTVVGGDVEFVC 132
Query: 695 VAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN------RILTIPNVKVEDQG 737
+ P W + G P + N +L I NV ED G
Sbjct: 133 KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAG 192
Query: 738 EYICRASN 745
EY C A N
Sbjct: 193 EYTCLAGN 200
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQG 737
A A + V+ C A G P P+ W + G + N + L +V D+G
Sbjct: 22 AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKG 81
Query: 738 EYICRASNDRSALESSVTISI 758
Y C N+ ++ + + +
Sbjct: 82 NYTCVVENEYGSINHTYHLDV 102
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCE 784
LTI N +ED G Y C+A++ + E++V + I + F ++ + D C
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 119
Query: 785 AFGVPDVTYSWFRNGE 800
P SW + E
Sbjct: 120 VSSSPAPAVSWLYHNE 135
>pdb|3C2S|A Chain A, Structural Characterization Of A Human Fc Fragment
Engineered For Lack Of Effector Functions
Length = 225
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 714 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTISIQA------EPN- 763
PR + + R++++ V +D EY C+ SN AL +S+ +I EP
Sbjct: 69 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNK--ALPASIEKTISKAKGQPREPQV 126
Query: 764 FTIPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGE 800
+T+P + + M NQ LT + F D+ W NG+
Sbjct: 127 YTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQ 164
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 692 LECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR--ILTIPNVKVEDQGEYICRASNDRSA 749
L+C A G P+P +W + G P L I N+++ D G Y C A++
Sbjct: 28 LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGE 87
Query: 750 LESSVTISI 758
S + +
Sbjct: 88 TSWSAVLDV 96
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 214 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVEDRGSY 272
L C A G P P W KE + P D R T+ G L I + R + D G+Y
Sbjct: 28 LKCKATGDPLPVISWLKEGFTF---------PGRDPRATIQEQGTLQIKNLR-ISDTGTY 77
Query: 273 HCKASNKFG 281
C A++ G
Sbjct: 78 TCVATSSSG 86
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 487 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVEDRGSY 545
L C A G P P W KE + P D R T+ G L I + R + D G+Y
Sbjct: 28 LKCKATGDPLPVISWLKEGFTF---------PGRDPRATIQEQGTLQIKNLR-ISDTGTY 77
Query: 546 HCKASNKFG 554
C A++ G
Sbjct: 78 TCVATSSSG 86
>pdb|2OX9|A Chain A, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|B Chain B, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|C Chain C, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain.
pdb|2OX9|D Chain D, Mouse Scavenger Receptor C-Type Lectin
Carbohydrate-Recognition Domain
Length = 140
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP HW + D CY F + DAKL C+ S L +N +E +I
Sbjct: 5 CPPHWKNFTDKCYYFSLEK-EIFEDAKLFCEDKSSHLVFINSREEQQWI 52
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 25 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 76
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 77 DKGNYTCVVENEYGSI 92
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 483 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 25 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 76
Query: 541 DRGSYHCKASNKFGSI 556
D+G+Y C N++GSI
Sbjct: 77 DKGNYTCVVENEYGSI 92
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQ 736
A A + V+ C A G P+P+ W + G + N + L + +V D+
Sbjct: 19 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 78
Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPD 790
G Y C N+ ++ + + + E + P+ + A D+ + C+ +
Sbjct: 79 GNYTCVVENEYGSINHTYHLDV-VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 137
Query: 791 VTYSWFRNGE 800
W ++ E
Sbjct: 138 PHIQWIKHVE 147
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 44/139 (31%), Gaps = 23/139 (16%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
+L ++ D GNY+C V+++ ++ H Q P N
Sbjct: 67 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV---- 122
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN------RILT 727
G V C + P W + G P + N +L
Sbjct: 123 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 180
Query: 728 IPNVKVEDQGEYICRASND 746
I NV ED GEY C A N
Sbjct: 181 IRNVTFEDAGEYTCLAGNS 199
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 86
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 87 DKGNYTCVVENEYGSI 102
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 483 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 35 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 86
Query: 541 DRGSYHCKASNKFGSI 556
D+G+Y C N++GSI
Sbjct: 87 DKGNYTCVVENEYGSI 102
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 45/136 (33%), Gaps = 21/136 (15%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
+L ++ D GNY+C V+++ ++ H Q P N
Sbjct: 77 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV---- 132
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN----RILTIP 729
G V C + P W + G P + N +L +
Sbjct: 133 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190
Query: 730 NVKVEDQGEYICRASN 745
NV D GEYIC+ SN
Sbjct: 191 NVTEADAGEYICKVSN 206
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYI 740
A + V+ C A G P+P+ W + G + N + L + +V D+G Y
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 741 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPDVTYS 794
C N+ ++ + + + E + P+ + A D+ + C+ +
Sbjct: 93 CVVENEYGSINHTYHLDV-VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQ 151
Query: 795 WFRNGE 800
W ++ E
Sbjct: 152 WIKHVE 157
>pdb|3LRS|L Chain L, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|B Chain B, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|D Chain D, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|F Chain F, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
Length = 211
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 726 LTIPNVKVEDQGEYICRASNDRS------ALESSVTISIQAEPNFTI--PLTDKHMDNQA 777
LTI + +ED+G+Y C + DRS + +V +A P+ T+ P +++ N+A
Sbjct: 73 LTISGLHIEDEGDYFCSSLTDRSHRIFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKA 132
Query: 778 DLTWTCEAFGVPDVTYSW 795
L F VT +W
Sbjct: 133 TLVCLISDFYPGAVTVAW 150
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 78
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 79 DKGNYTCVVENEYGSI 94
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 483 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 27 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 78
Query: 541 DRGSYHCKASNKFGSI 556
D+G+Y C N++GSI
Sbjct: 79 DKGNYTCVVENEYGSI 94
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQ 736
A A + V+ C A G P+P+ W + G + N + L + +V D+
Sbjct: 21 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPD 790
G Y C N+ ++ + + + E + P+ + A D+ + C+ +
Sbjct: 81 GNYTCVVENEYGSINHTYHLDV-VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 139
Query: 791 VTYSWFRNGE 800
W ++ E
Sbjct: 140 PHIQWIKHVE 149
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 44/139 (31%), Gaps = 23/139 (16%)
Query: 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
+L ++ D GNY+C V+++ ++ H Q P N
Sbjct: 69 SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV---- 124
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRR-----------GSPLPRNAYFENFN------RILT 727
G V C + P W + G P + N +L
Sbjct: 125 --GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 182
Query: 728 IPNVKVEDQGEYICRASND 746
I NV ED GEY C A N
Sbjct: 183 IRNVTFEDAGEYTCLAGNS 201
>pdb|3MUG|A Chain A, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|C Chain C, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|E Chain E, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|G Chain G, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|I Chain I, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|K Chain K, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
Length = 216
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 726 LTIPNVKVEDQGEYICRASNDRS------ALESSVTISIQAEPNFTI--PLTDKHMDNQA 777
LTI + +ED+G+Y C + DRS + +V +A P+ T+ P +++ N+A
Sbjct: 75 LTISGLHIEDEGDYFCSSLTDRSHRIFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 778 DLTWTCEAFGVPDVTYSW 795
L F VT +W
Sbjct: 135 TLVCLISDFYPGAVTVAW 152
>pdb|3MME|L Chain L, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
pdb|3MME|B Chain B, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
pdb|3MME|D Chain D, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
Length = 216
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 726 LTIPNVKVEDQGEYICRASNDRS------ALESSVTISIQAEPNFTI--PLTDKHMDNQA 777
LTI + +ED+G+Y C + DRS + +V +A P+ T+ P +++ N+A
Sbjct: 75 LTISGLHIEDEGDYFCSSLTDRSHRIFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 778 DLTWTCEAFGVPDVTYSW 795
L F VT +W
Sbjct: 135 TLVCLISDFYPGAVTVAW 152
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLP-RNAYFENFNRILTIPNVKVEDQGEYICRASN 745
G L+C G PVP W G P+ + E L I + ED G Y C A N
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAEN 85
Query: 746 DRSALESSVTISIQ 759
+ S +++
Sbjct: 86 ALGQVSCSAWVTVH 99
>pdb|3DNK|A Chain A, Enzyme Deglycosylated Human Igg1 Fc Fragment
pdb|3DNK|B Chain B, Enzyme Deglycosylated Human Igg1 Fc Fragment
Length = 212
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---QGEYICRASN 745
V+ P +NW G + PR +++ R++++ V +D EY C+ SN
Sbjct: 31 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYDSTYRVVSVLTVLHQDWLNGKEYKCKVSN 90
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + + M NQ LT + F D+ W NG
Sbjct: 91 KALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNG 150
Query: 800 E 800
+
Sbjct: 151 Q 151
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 702 PSYNWTRRGSPLPRNAYFENF---NRILTIPNVKVEDQGEYICRASN-DRSALESSVTIS 757
P Y ++ +G R F+N+ + +T+ N+ D G+YIC+A +SS T++
Sbjct: 50 PQYGFSVQGEYQGR-VLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVT 108
Query: 758 IQAEPNFT-IPLTDKHMD--NQADLTWTCEAFGVPDVTYSWFRNGELG 802
+ EP + I D +D N+ A G P W G+LG
Sbjct: 109 VLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDW--EGDLG 154
>pdb|2AFP|A Chain A, The Solution Structure Of Type Ii Antifreeze Protein
Reveals A New Member Of The Lectin Family
Length = 129
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W D C + + + T A+ NC L LA+++ +EH FI
Sbjct: 7 CPAGWQPLGDRCIYYETTAM-TWALAETNCMKLGGHLASIHSQEEHSFIQTL-----NAG 60
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLN 112
W G W DGT +N
Sbjct: 61 VVWIGGSACLQAGAWTWSDGTPMN 84
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 775 NQADLTWTCEAFGVPDVTYSWFRNGEL 801
NQ ++T CE F P T SWFR+G+L
Sbjct: 34 NQVNIT--CEVFAYPSATISWFRDGQL 58
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKV--------EDQGE 738
G++V + C F YP + +W R G LP + Y N +I P+ D G
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNY-SNI-KIYNTPSASYLEVTPDSENDFGN 90
Query: 739 YICRASNDRSALESSVTISIQAE 761
Y C A N R ES I +QA+
Sbjct: 91 YNCTAVN-RIGQESLEFILVQAD 112
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY 445
G++V + C F YP + +W R G LP + Y
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNY 64
>pdb|1T8C|A Chain A, Structure Of The C-Type Lectin Domain Of Cd23
pdb|1T8D|A Chain A, Structure Of The C-Type Lectin Domain Of Cd23
pdb|4EZM|G Chain G, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|H Chain H, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|I Chain I, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|J Chain J, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|K Chain K, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
pdb|4EZM|L Chain L, Crystal Structure Of The Human Ige-Fc(Epsilon)3-4 Bound
To Its B Cell Receptor Dercd23
Length = 143
Score = 33.5 bits (75), Expect = 0.51, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP+ W+ ++ CY F K K A+ C ++ L +++ +E F+
Sbjct: 8 CPEKWINFQRKCYYFGKGT-KQWVHARYACDDMEGQLVSIHSPEEQDFL 55
>pdb|2XR6|A Chain A, Crystal Structure Of The Complex Of The Carbohydrate
Recognition Domain Of Human Dc-Sign With Pseudo
Trimannoside Mimic
Length = 170
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 22 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 72
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 24 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 75
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 76 DKGNYTCVVENEYGSI 91
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 483 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 24 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 75
Query: 541 DRGSYHCKASNKFGSI 556
D+G+Y C N++GSI
Sbjct: 76 DKGNYTCVVENEYGSI 91
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQG 737
A A + V+ C A G P+P+ W + G + N + L + +V D+G
Sbjct: 19 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 78
Query: 738 EYICRASNDRSALESSVTISI 758
Y C N+ ++ + + +
Sbjct: 79 NYTCVVENEYGSINHTYHLDV 99
>pdb|1H3T|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(Mn2f)2
pdb|1H3T|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(Mn2f)2
pdb|1H3U|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(M3n2f)2
pdb|1H3U|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(M3n2f)2
pdb|1H3V|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2,Sg P212121
pdb|1H3V|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2,Sg P212121
pdb|1H3W|M Chain M, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2, Sg C2221
pdb|1H3Y|A Chain A, Crystal Structure Of A Human Igg1 Fc-Fragment,High Salt
Condition
pdb|1H3Y|B Chain B, Crystal Structure Of A Human Igg1 Fc-Fragment,High Salt
Condition
pdb|1H3X|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G0f)2
pdb|1H3X|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G0f)2
Length = 223
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V + D EY C+ SN TIS + +P +T
Sbjct: 67 PREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 126
Query: 766 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + + M NQ LT + F D+ W NG+
Sbjct: 127 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQ 162
>pdb|1DN2|A Chain A, Fc Fragment Of Human Igg1 In Complex With An Engineered 13
Residue Peptide Dcawhlgelvwct-Nh2
pdb|1DN2|B Chain B, Fc Fragment Of Human Igg1 In Complex With An Engineered 13
Residue Peptide Dcawhlgelvwct-Nh2
Length = 207
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---QGEYICRASN 745
V+ P +NW G + PR + + R++++ V +D EY C+ SN
Sbjct: 30 VSHENPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 89
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + + M NQ LT + F D+ W NG
Sbjct: 90 KALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNG 149
Query: 800 E 800
+
Sbjct: 150 Q 150
>pdb|1E4K|A Chain A, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4K|B Chain B, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
Length = 225
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V + D EY C+ SN TIS + +P +T
Sbjct: 69 PREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 128
Query: 766 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + + M NQ LT + F D+ W NG+
Sbjct: 129 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQ 164
>pdb|2IG2|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 455
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V + D EY C+ SN TIS + +P +T
Sbjct: 300 PREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 359
Query: 766 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + + M NQ LT + F D+ W NG+
Sbjct: 360 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQ 395
>pdb|2XR5|A Chain A, Crystal Structure Of The Complex Of The Carbohydrate
Recognition Domain Of Human Dc-Sign With Pseudo
Dimannoside Mimic
Length = 166
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 18 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 68
>pdb|1T83|A Chain A, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T83|B Chain B, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T89|A Chain A, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
pdb|1T89|B Chain B, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
Length = 224
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 68 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 127
Query: 766 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + + M NQ LT + F D+ W NG+
Sbjct: 128 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQ 163
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 13/154 (8%)
Query: 617 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF 676
R + +G+L F + D G Y+ ++ +D ++ H Q F
Sbjct: 64 REIIYSNGSLLFQMITMKDMGVYTLDM----TDENYRRTQATVRFHVHQPVTQ-----PF 114
Query: 677 PKTFPEAPKAGDKVRLECVA--FGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVE 734
+ K D V L C++ G + + + + L N IL I +K E
Sbjct: 115 LQVTNTTVKELDSVTLTCLSNDIGANI-QWLFNSQSLQLTERMTLSQNNSILRIDPIKRE 173
Query: 735 DQGEYICRASNDRSALES-SVTISIQAEPNFTIP 767
D GEY C SN S S S+ + I +P+ +P
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDIIFDPSRLVP 207
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 249 KRFTLSGGNLIIN-DPRQVEDRGSYHCKASNKFGSIISESVQLAFGF 294
+R TLS N I+ DP + ED G Y C+ SN S S++L F
Sbjct: 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 522 KRFTLSGGNLIIN-DPRQVEDRGSYHCKASNKFGSIISESVQLAFGF 567
+R TLS N I+ DP + ED G Y C+ SN S S++L F
Sbjct: 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200
>pdb|1FC1|A Chain A, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-And 2.8-Angstroms
Resolution
pdb|1FC1|B Chain B, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-And 2.8-Angstroms
Resolution
pdb|1FC2|D Chain D, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-and 2.8-angstroms
Resolution
Length = 224
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V + D EY C+ SN TIS + +P +T
Sbjct: 69 PREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 128
Query: 766 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + + M NQ LT + F D+ W NG+
Sbjct: 129 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQ 164
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 28 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 79
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 80 DKGNYTCVVENEYGSI 95
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 483 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 28 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 79
Query: 541 DRGSYHCKASNKFGSI 556
D+G+Y C N++GSI
Sbjct: 80 DKGNYTCVVENEYGSI 95
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQG 737
A A + V+ C A G P+P+ W + G + N + L + +V D+G
Sbjct: 23 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 82
Query: 738 EYICRASNDRSALESSVTISI 758
Y C N+ ++ + + +
Sbjct: 83 NYTCVVENEYGSINHTYHLDV 103
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 29 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 80
Query: 268 DRGSYHCKASNKFGSI 283
D+G+Y C N++GSI
Sbjct: 81 DKGNYTCVVENEYGSI 96
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 483 NDITLSCYAGGYPNPSYEWFK--EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + C AGG P P+ W K +++ Q+ + + ++ ++L I +
Sbjct: 29 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY--KVRNQHWSL------IMESVVPS 80
Query: 541 DRGSYHCKASNKFGSI 556
D+G+Y C N++GSI
Sbjct: 81 DKGNYTCVVENEYGSI 96
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQG 737
A A + V+ C A G P+P+ W + G + N + L + +V D+G
Sbjct: 24 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 83
Query: 738 EYICRASNDRSALESSVTISI 758
Y C N+ ++ + + +
Sbjct: 84 NYTCVVENEYGSINHTYHLDV 104
>pdb|3RY6|A Chain A, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
pdb|3RY6|B Chain B, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 214
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVE---DQGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V + D EY C+ SN TIS + +P +T
Sbjct: 61 PREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 120
Query: 766 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + + M NQ LT + F D+ W NG+
Sbjct: 121 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQ 156
>pdb|1FRT|C Chain C, Crystal Structure Of The Complex Of Rat Neonatal Fc
Receptor With Fc
Length = 205
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVE---DQGEYICRASN 745
V+ P +NW G + PR + + R++++ V + D EY C+ SN
Sbjct: 28 VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 87
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + + M NQ LT + F D+ W NG
Sbjct: 88 KALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNG 147
Query: 800 E 800
+
Sbjct: 148 Q 148
>pdb|3DO3|A Chain A, Human 1gg1 Fc Fragment, 2.5 Angstrom Structure
pdb|3DO3|B Chain B, Human 1gg1 Fc Fragment, 2.5 Angstrom Structure
Length = 212
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 56 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 115
Query: 766 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + + M NQ LT + F D+ W NG+
Sbjct: 116 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQ 151
>pdb|2GJ7|A Chain A, Crystal Structure Of A Ge-GiFC COMPLEX
pdb|2GJ7|B Chain B, Crystal Structure Of A Ge-GiFC COMPLEX
Length = 227
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 71 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 130
Query: 766 IPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + + M NQ LT + F D+ W NG+
Sbjct: 131 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQ 166
>pdb|1QGC|4 Chain 4, Structure Of The Complex Of An Fab Fragment Of A
Neutralizing Antibody With Foot And Mouth Disease Virus
Length = 438
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 26/124 (20%)
Query: 192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD-----RLV----ANL 242
+ P + L +R+ T+SC A + S F Y Q +L+ +NL
Sbjct: 4 LTQSPASLAVSLGQRA-----TISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNL 58
Query: 243 IDPLSDKRFTLSGGNL---IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 299
+ D RF+ SG + DP + +D +Y+C+ SN+ V L FG + +
Sbjct: 59 ESGIPD-RFSGSGSRTDFTLTIDPVEADDVATYYCQQSNE--------VPLTFGAGTKLD 109
Query: 300 LKRA 303
LKRA
Sbjct: 110 LKRA 113
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 26/124 (20%)
Query: 465 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD-----RLV----ANL 515
+ P + L +R+ T+SC A + S F Y Q +L+ +NL
Sbjct: 4 LTQSPASLAVSLGQRA-----TISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNL 58
Query: 516 IDPLSDKRFTLSGGNL---IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 572
+ D RF+ SG + DP + +D +Y+C+ SN+ V L FG + +
Sbjct: 59 ESGIPD-RFSGSGSRTDFTLTIDPVEADDVATYYCQQSNE--------VPLTFGAGTKLD 109
Query: 573 LKRA 576
LKRA
Sbjct: 110 LKRA 113
>pdb|2B6B|D Chain D, Cryo Em Structure Of Dengue Complexed With Crd Of
Dc-Sign
Length = 175
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 27 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 77
>pdb|1FCC|A Chain A, Crystal Structure Of The C2 Fragment Of Streptococcal
Protein G In Complex With The Fc Domain Of Human Igg
pdb|1FCC|B Chain B, Crystal Structure Of The C2 Fragment Of Streptococcal
Protein G In Complex With The Fc Domain Of Human Igg
Length = 206
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVE---DQGEYICRASN 745
V+ P +NW G + PR + + R++++ V + D EY C+ SN
Sbjct: 29 VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 88
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLTDKHM-DNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + + M NQ LT + F D+ W NG
Sbjct: 89 KALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNG 148
Query: 800 E 800
+
Sbjct: 149 Q 149
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 249 KRFTLSGGNLIIN-DPRQVEDRGSYHCKASNKFGSIISESVQLAFGF 294
+R TLS N I+ DP + ED G Y C+ SN S S++L F
Sbjct: 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 522 KRFTLSGGNLIIN-DPRQVEDRGSYHCKASNKFGSIISESVQLAFGF 567
+R TLS N I+ DP + ED G Y C+ SN S S++L F
Sbjct: 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 57/149 (38%), Gaps = 13/149 (8%)
Query: 617 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF 676
R + +G+L F + D G Y+ ++ +D ++ H Q F
Sbjct: 64 REIIYSNGSLLFQMITMKDMGVYTLDM----TDENYRRTQATVRFHVHQPVTQ-----PF 114
Query: 677 PKTFPEAPKAGDKVRLECVA--FGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVE 734
+ K D V L C++ G + + + + L N IL I +K E
Sbjct: 115 LQVTNTTVKELDSVTLTCLSNDIGANI-QWLFNSQSLQLTERMTLSQNNSILRIDPIKRE 173
Query: 735 DQGEYICRASNDRSALES-SVTISIQAEP 762
D GEY C SN S S S+ + I +P
Sbjct: 174 DAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
>pdb|3V8C|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) DOUBLE MUTANT (H310 AND H435 IN K)
pdb|3V8C|B Chain B, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) DOUBLE MUTANT (H310 AND H435 IN K)
Length = 212
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 56 PREEQYNSTYRVVSVLTVLKQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 115
Query: 766 IPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + D+ NQ LT + F D+ W NG+
Sbjct: 116 LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQ 151
>pdb|1K9I|A Chain A, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|B Chain B, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|C Chain C, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|D Chain D, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|E Chain E, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|F Chain F, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|G Chain G, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|H Chain H, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|I Chain I, Complex Of Dc-Sign And Glcnac2man3
pdb|1K9I|J Chain J, Complex Of Dc-Sign And Glcnac2man3
Length = 156
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 8 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 58
>pdb|1SL4|A Chain A, Crystal Structure Of Dc-Sign Carbohydrate Recognition
Domain Complexed With Man4
pdb|2IT6|A Chain A, Crystal Structure Of Dcsign-Crd With Man2
Length = 155
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 7 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 57
>pdb|2J6E|A Chain A, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
pdb|2J6E|B Chain B, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
Length = 232
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---QGEYICRASN 745
V+ P +NW G + PR + + R++++ V +D EY C+ SN
Sbjct: 51 VSHEEPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 110
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + D+ NQ LT + F D+ W NG
Sbjct: 111 KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNG 170
Query: 800 E 800
+
Sbjct: 171 Q 171
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 617 RVFVSYDGALYFSA----LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKF 672
R+ + G L FS L DAG Y C + +N LK P ++ L+
Sbjct: 174 RLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRG 233
Query: 673 PNNFPKTF-PEAP---------KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF 722
F PE +G+ + G P++ +P ++ F
Sbjct: 234 SVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFS-- 291
Query: 723 NRILTIPNVKVEDQGEYICRASNDRSALESS 753
+ I ++ ED G Y+C A +D E S
Sbjct: 292 ---VVITGLRKEDAGRYLCGAHSDGQLQEGS 319
>pdb|1SL5|A Chain A, Crystal Structure Of Dc-Sign Carbohydrate Recognition
Domain Complexed With Lnfp Iii (Dextra L504).
pdb|2IT5|A Chain A, Crystal Structure Of Dcsign-crd With Man6
Length = 139
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
CP W ++ +CY F+ + + +D+ CK + + L + A+E F+ Q
Sbjct: 7 CPWEWTFFQGNCY-FMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQ 57
>pdb|1OQO|A Chain A, Complex Between G0 Version Of An Fc Bound To A Minimized
Version Of Protein A Called Mini-Z
pdb|1OQO|B Chain B, Complex Between G0 Version Of An Fc Bound To A Minimized
Version Of Protein A Called Mini-Z
pdb|1OQX|A Chain A, G-2 Glycovariant Of Human Igg Fc Bound To Minimized
Version Of Protein A Called Z34c
pdb|1OQX|B Chain B, G-2 Glycovariant Of Human Igg Fc Bound To Minimized
Version Of Protein A Called Z34c
pdb|3V95|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc And
Igg1 T125(Yb20) IN THE PRESENCE OF EDTA
pdb|3V95|B Chain B, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc And
Igg1 T125(Yb20) IN THE PRESENCE OF EDTA
Length = 212
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---QGEYICRASN 745
V+ P +NW G + PR + + R++++ V +D EY C+ SN
Sbjct: 31 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 90
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + D+ NQ LT + F D+ W NG
Sbjct: 91 KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNG 150
Query: 800 E 800
+
Sbjct: 151 Q 151
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
DAG Y C V ++ D ++ +K+F F+ P F K G+ + C
Sbjct: 73 DAGIYKCVVTAE--DGTQSEATVNVKIFQKLMFKNAPTPQEF--------KEGEDAVIVC 122
Query: 695 VAFGYPVPSYNWTRRGSP--LPRNAYFENF-NRILTIPNVKVEDQGEYICRA 743
P+ W +G L ++ F N L I +K D+G Y C
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG 174
>pdb|4ACP|A Chain A, Deactivation Of Human Igg1 Fc By Endoglycosidase Treatment
pdb|4ACP|B Chain B, Deactivation Of Human Igg1 Fc By Endoglycosidase Treatment
Length = 240
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 76 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 135
Query: 766 IPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + D+ NQ LT + F D+ W NG+
Sbjct: 136 LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQ 171
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 696 AFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALE 751
A G P P+ WT+ G + + + + L I D G Y C N ++
Sbjct: 30 ATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVS 89
Query: 752 SSVTISIQA 760
SS ++I+A
Sbjct: 90 SSCKLTIKA 98
>pdb|2DTS|A Chain A, Crystal Structure Of The Defucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|2DTS|B Chain B, Crystal Structure Of The Defucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AVE|A Chain A, Crystal Structure Of The Fucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AVE|B Chain B, Crystal Structure Of The Fucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AY4|A Chain A, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
pdb|3AY4|B Chain B, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
Length = 223
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 67 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 126
Query: 766 IPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + D+ NQ LT + F D+ W NG+
Sbjct: 127 LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQ 162
>pdb|3AGV|A Chain A, Crystal Structure Of A Human Igg-Aptamer Complex
pdb|3AGV|B Chain B, Crystal Structure Of A Human Igg-Aptamer Complex
Length = 211
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---QGEYICRASN 745
V+ P +NW G + PR + + R++++ V +D EY C+ SN
Sbjct: 30 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 89
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + D+ NQ LT + F D+ W NG
Sbjct: 90 KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNG 149
Query: 800 E 800
+
Sbjct: 150 Q 150
>pdb|3FJT|A Chain A, Crystal Structure Of A Human Fc Fragment Engineered For
Extended Serum Half-life
pdb|3FJT|B Chain B, Crystal Structure Of A Human Fc Fragment Engineered For
Extended Serum Half-life
Length = 209
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---QGEYICRASN 745
V+ P +NW G + PR + + R++++ V +D EY C+ SN
Sbjct: 31 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 90
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + D+ NQ LT + F D+ W NG
Sbjct: 91 KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNG 150
Query: 800 E 800
+
Sbjct: 151 Q 151
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 32.3 bits (72), Expect = 1.00, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 676 FPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNV 731
FP+ P +G + L+CV G P P W + G L + + L +
Sbjct: 20 FPR--PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAA 77
Query: 732 KVEDQGEYICRASNDRSALESSVTISIQAEP 762
D G Y+CRA N ++ +++ P
Sbjct: 78 LPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 108
>pdb|3SGJ|A Chain A, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGJ|B Chain B, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|A Chain A, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|B Chain B, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
Length = 225
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 69 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 128
Query: 766 IPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + D+ NQ LT + F D+ W NG+
Sbjct: 129 LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQ 164
>pdb|3S7G|A Chain A, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|B Chain B, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|C Chain C, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|D Chain D, Aglycosylated Human Igg1 Fc Fragment
Length = 227
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 71 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 130
Query: 766 IPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + D+ NQ LT + F D+ W NG+
Sbjct: 131 LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQ 166
>pdb|2WAH|A Chain A, Crystal Structure Of An Igg1 Fc Glycoform (man9glcnac2)
pdb|2WAH|B Chain B, Crystal Structure Of An Igg1 Fc Glycoform (man9glcnac2)
Length = 209
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---QGEYICRASN 745
V+ P +NW G + PR + + R++++ V +D EY C+ SN
Sbjct: 30 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 89
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + D+ NQ LT + F D+ W NG
Sbjct: 90 KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNG 149
Query: 800 E 800
+
Sbjct: 150 Q 150
>pdb|4B7I|A Chain A, Crystal Structure Of Human Igg Fc Bearing Hybrid-Type
Glycans
pdb|4B7I|B Chain B, Crystal Structure Of Human Igg Fc Bearing Hybrid-Type
Glycans
Length = 218
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---QGEYICRASN 745
V+ P +NW G + PR + + R++++ V +D EY C+ SN
Sbjct: 30 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 89
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + D+ NQ LT + F D+ W NG
Sbjct: 90 KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNG 149
Query: 800 E 800
+
Sbjct: 150 Q 150
>pdb|3D6G|A Chain A, Fc Fragment Of Igg1 (herceptin) With Protein-a Mimetic
Peptide Dendrimer Ligand.
pdb|3D6G|B Chain B, Fc Fragment Of Igg1 (herceptin) With Protein-a Mimetic
Peptide Dendrimer Ligand
Length = 210
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---QGEYICRASN 745
V+ P +NW G + PR + + R++++ V +D EY C+ SN
Sbjct: 31 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 90
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + D+ NQ LT + F D+ W NG
Sbjct: 91 KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNG 150
Query: 800 E 800
+
Sbjct: 151 Q 151
>pdb|1FJ1|B Chain B, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
pdb|1FJ1|D Chain D, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
Length = 213
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 31/146 (21%)
Query: 681 PEAPKAGDKVRLECVAFGYPVPSYN--WTRR--GSPLPRNA----------YFENF---- 722
PE K G+ V++ C A GY Y+ W ++ G L R Y ++F
Sbjct: 9 PELKKPGETVKISCKASGYTFTDYSMYWVKQAPGKGLKRMGWINTETGEPTYADDFKGRF 68
Query: 723 ---------NRILTIPNVKVEDQGEYICRASNDRSALESSVTI-SIQAEPNFTIPLTDKH 772
L I N+K ED Y C D +SVT+ S + P PL
Sbjct: 69 ALSLDTSASTAYLHISNLKNEDTATYFCARGLDSWGQGTSVTVSSAKTTPPSVYPLAPGC 128
Query: 773 MDNQ-ADLTWTCEAFG-VPD-VTYSW 795
D + +T C G P+ VT +W
Sbjct: 129 GDTTGSSVTLGCLVKGYFPESVTVTW 154
>pdb|3V7M|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) IN THE PRESENCE OF ZN2+
Length = 209
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---QGEYICRASN 745
V+ P +NW G + PR + + R++++ V +D EY C+ SN
Sbjct: 31 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 90
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + D+ NQ LT + F D+ W NG
Sbjct: 91 KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNG 150
Query: 800 E 800
+
Sbjct: 151 Q 151
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWT--RRGSPL---PRNAYFENF----NRILTIPNVKVED 735
+ G+ + L C+ G V ++ WT R+ S P + + IL IP+ ++ED
Sbjct: 194 RQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELED 253
Query: 736 QGEYICRAS 744
G Y C +
Sbjct: 254 SGTYTCNVT 262
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILT 727
P F P+ +G + L+CV G P P W + G L + + L
Sbjct: 14 PPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 73
Query: 728 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
+ D G Y+CRA N ++ +++ P
Sbjct: 74 LTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 108
>pdb|1L6X|A Chain A, Fc Fragment Of Rituximab Bound To A Minimized Version Of
The B-Domain From Protein A Called Z34c
pdb|2IWG|A Chain A, Complex Between The Pryspry Domain Of Trim21 And Igg Fc
pdb|2IWG|D Chain D, Complex Between The Pryspry Domain Of Trim21 And Igg Fc
Length = 207
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 695 VAFGYPVPSYNWTRRGSPL------PRNAYFENFNRILTIPNVKVED---QGEYICRASN 745
V+ P +NW G + PR + + R++++ V +D EY C+ SN
Sbjct: 30 VSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSN 89
Query: 746 DRSALESSVTIS-IQAEPN----FTIPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
TIS + +P +T+P + D+ NQ LT + F D+ W NG
Sbjct: 90 KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNG 149
Query: 800 E 800
+
Sbjct: 150 Q 150
>pdb|1HZH|H Chain H, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
pdb|1HZH|K Chain K, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
Length = 457
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 714 PRNAYFENFNRILTIPNVKVED---QGEYICRASNDRSALESSVTIS-IQAEPN----FT 765
PR + + R++++ V +D EY C+ SN TIS + +P +T
Sbjct: 301 PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT 360
Query: 766 IPLT-DKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+P + D+ NQ LT + F D+ W NG+
Sbjct: 361 LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQ 396
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNW-TRRGSPLPRNAYFENFNRI----LTIPNVKVEDQGEYIC 741
G L+C G + S NW T G+ + +Y + + L NV V+D G+Y C
Sbjct: 327 GMAAELKCRT-GTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTC 385
Query: 742 RASNDRSALESSVTISI 758
+N +S T+++
Sbjct: 386 MVTNSAGNTTASATLNV 402
>pdb|3MJ9|L Chain L, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
pdb|3MJ8|L Chain L, Crystal Structure Of Hl4e10 Fab, A Hamster Ab Stimulatory
For Gammadelta T Cells
pdb|3MJ8|A Chain A, Crystal Structure Of Hl4e10 Fab, A Hamster Ab Stimulatory
For Gammadelta T Cells
Length = 213
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 704 YNWTRRGSPLPRNAYFENFNRI--LTIPNVKVEDQGEYICRA---SNDRSALESSVTISI 758
Y RR S +P + N + LTI + D+ +Y C++ +N S +++
Sbjct: 48 YEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTV 107
Query: 759 QAEPN------FTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
+PN P +++ NQA L F DV +W +G
Sbjct: 108 LGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADG 154
>pdb|3FFD|B Chain B, Structure Of Parathyroid Hormone-Related Protein Complexed
To A Neutralizing Monoclonal Antibody
Length = 220
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 723 NRILTIPNVKVEDQGEYICRASNDRS-----ALESSVTISIQAEPNFTIPLT------DK 771
+R L+I N++ ED+ YIC + +++ EP T LT ++
Sbjct: 74 DRYLSISNIQPEDEAMYICGVGDTIKEQFVYVFGGGTKVTVLGEPKSTPTLTVFPPSSEE 133
Query: 772 HMDNQADLTWTCEAFGVPDVTYSWFRNG 799
+N+A L F VT +W NG
Sbjct: 134 LKENKATLVCLISNFSPSGVTVAWKANG 161
>pdb|2H2R|A Chain A, Crystal Structure Of The Human Cd23 Lectin Domain, Apo
Form
pdb|2H2R|B Chain B, Crystal Structure Of The Human Cd23 Lectin Domain, Apo
Form
pdb|2H2T|B Chain B, Cd23 Lectin Domain, Calcium 2+-Bound
Length = 175
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP+ W+ ++ CY F K K A+ C ++ L +++ +E F+
Sbjct: 17 CPEKWINFQRKCYYFGKG-TKQWVHARYACDDMEGQLVSIHSPEEQDFL 64
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 676 FPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNV 731
FP+ P +G + L+CV G P P W + G L + + L +
Sbjct: 19 FPR--PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAA 76
Query: 732 KVEDQGEYICRASNDRSALESSVTISIQAEP 762
D G Y+CRA N ++ +++ P
Sbjct: 77 LPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>pdb|1XPH|A Chain A, Structure Of Dc-Signr And A Portion Of Repeat Domain 8
Length = 150
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 21 TIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
+ L CP+ W ++ +CY F+ + + +D+ C+ + + L + A+E F+ Q
Sbjct: 11 AFERLCRHCPKDWTFFQGNCY-FMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQ 69
>pdb|3UBU|A Chain A, Crystal Structure Of Agkisacucetin, A Gpib-Binding Snaclec
(Snake C- Type Lectin) That Inhibits Platelet
Length = 131
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQLFW 83
++ C W Y SCYR K LKT +DA+ C + L ++ A E F+ QL
Sbjct: 1 DVDCLPGWSAYDQSCYRVFK-LLKTWDDAEKFCTERPKGGHLVSIESAGERDFVA-QLVS 58
Query: 84 QDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWG 143
++ +Q+ N+W+ G + E D Y +S QS K +
Sbjct: 59 EN-----------KQTDNVWL---GLKIQSKGQQCSTEWTDGSSVSYENFSEYQSKKCFV 104
Query: 144 FERVTGMEPLL 154
E+ TG L
Sbjct: 105 LEKNTGFRTWL 115
>pdb|1WMY|A Chain A, Crystal Structure Of C-Type Lectin Cel-I From Cucumaria
Echinata
pdb|1WMY|B Chain B, Crystal Structure Of C-Type Lectin Cel-I From Cucumaria
Echinata
pdb|1WMZ|A Chain A, Crystal Structure Of C-Type Lectin Cel-I Complexed With
N- Acetyl-D-Galactosamine
pdb|1WMZ|B Chain B, Crystal Structure Of C-Type Lectin Cel-I Complexed With
N- Acetyl-D-Galactosamine
pdb|1WMZ|C Chain C, Crystal Structure Of C-Type Lectin Cel-I Complexed With
N- Acetyl-D-Galactosamine
pdb|1WMZ|D Chain D, Crystal Structure Of C-Type Lectin Cel-I Complexed With
N- Acetyl-D-Galactosamine
Length = 140
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS-------LDSDLANVNDADEHGFIM 78
+CP W D CYRF + L T +A C S + SDL +V+ A E ++
Sbjct: 2 QCPTDWEAEGDHCYRFFNT-LTTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYVF 58
>pdb|1SL6|A Chain A, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|B Chain B, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|C Chain C, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|D Chain D, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|E Chain E, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1SL6|F Chain F, Crystal Structure Of A Fragment Of Dc-signr (containg The
Carbohydrate Recognition Domain And Two Repeats Of The
Neck) Complexed With Lewis-x.
pdb|1XAR|A Chain A, Crystal Structure Of A Fragment Of Dc-Signr (Containing
The Carbohydrate Recognition Domain And Two Repeats Of
The Neck).
pdb|1XAR|B Chain B, Crystal Structure Of A Fragment Of Dc-Signr (Containing
The Carbohydrate Recognition Domain And Two Repeats Of
The Neck)
Length = 184
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 21 TIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
+ L CP+ W ++ +CY F+ + + +D+ C+ + + L + A+E F+ Q
Sbjct: 45 AFERLCRHCPKDWTFFQGNCY-FMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQ 103
>pdb|1K9J|A Chain A, Complex Of Dc-signr And Glcnac2man3
pdb|1K9J|B Chain B, Complex Of Dc-signr And Glcnac2man3
Length = 139
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 23 DELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80
+ L CP+ W ++ +CY F+ + + +D+ C+ + + L + A+E F+ Q
Sbjct: 2 ERLCRHCPKDWTFFQGNCY-FMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQ 58
>pdb|1CDU|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Phe 43 Replaced By Val
Length = 178
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 723
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSVLTKGPSKLNDRADSRRSLWDQGN 66
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 784 EA 785
E+
Sbjct: 119 ES 120
>pdb|3BX4|B Chain B, Crystal Structure Of The Snake Venom Toxin Aggretin
pdb|3BX4|D Chain D, Crystal Structure Of The Snake Venom Toxin Aggretin
Length = 146
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 9 FIFVSFHS-VFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDL 65
FIFVSF V ++ CP W Y CY+ P K DA+ CK S L
Sbjct: 4 FIFVSFGLLVVFLSLSGTGADCPSGWSSYEGHCYKPFNEP-KNWADAERFCKLQPKHSHL 62
Query: 66 ANVNDADEHGFIM 78
+ A+E F++
Sbjct: 63 VSFQSAEEADFVV 75
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 669 QLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF---ENFNRI 725
+++ P + +T+ K G+++ L G P P WT+ G+PL + +F+ +
Sbjct: 23 KIRLPRHLRQTYIR--KVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTV 80
Query: 726 LTIPNVKVEDQGEY 739
+ D GEY
Sbjct: 81 FFVRQAARSDSGEY 94
>pdb|3U2S|L Chain L, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U2S|B Chain B, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U36|L Chain L, Crystal Structure Of Pg9 Fab
pdb|3U36|B Chain B, Crystal Structure Of Pg9 Fab
pdb|3U36|D Chain D, Crystal Structure Of Pg9 Fab
pdb|3U36|F Chain F, Crystal Structure Of Pg9 Fab
pdb|3U4E|L Chain L, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
pdb|3U4E|B Chain B, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
Length = 216
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 726 LTIPNVKVEDQGEYICRA--SNDRSALESSVTISI----QAEPNFTI--PLTDKHMDNQA 777
LTI ++ ED+G+Y C++ S R + +++ +A P+ T+ P +++ N+A
Sbjct: 75 LTISGLQAEDEGDYYCKSLTSTRRRVFGTGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 778 DLTWTCEAFGVPDVTYSW 795
L F VT +W
Sbjct: 135 TLVCLISDFYPGAVTVAW 152
>pdb|3VH8|G Chain G, Kir3dl1 In Complex With Hla-B5701
pdb|3VH8|H Chain H, Kir3dl1 In Complex With Hla-B5701
Length = 316
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 332 RDYFPNFV--EEDKRVFVSYDGALY-----FSALEQIDAGNYSCNVQSKVSDTGRNGPFF 384
R F NF+ +ED+ + G ++ S + AGNY+C S TG + P
Sbjct: 48 RHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSN 107
Query: 385 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
P+ + N ++ P+ P K+G++V L+C
Sbjct: 108 PVVIMVTGNHRK---PSLLAHPGPLV-KSGERVILQC 140
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 605 RDYFPNFV--EEDKRVFVSYDGALY-----FSALEQIDAGNYSCNVQSKVSDTGRNGPFF 657
R F NF+ +ED+ + G ++ S + AGNY+C S TG + P
Sbjct: 48 RHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSN 107
Query: 658 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
P+ + N ++ P+ P K+G++V L+C
Sbjct: 108 PVVIMVTGNHRK---PSLLAHPGPLV-KSGERVILQC 140
>pdb|3MUH|L Chain L, Crystal Structure Of Pg9 Light Chain
Length = 216
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 726 LTIPNVKVEDQGEYICRA--SNDRSALESSVTISI----QAEPNFTI--PLTDKHMDNQA 777
LTI ++ ED+G+Y C++ S R + +++ +A P+ T+ P +++ N+A
Sbjct: 75 LTISGLQAEDEGDYYCKSLTSTRRRVFGTGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 778 DLTWTCEAFGVPDVTYSW 795
L F VT +W
Sbjct: 135 TLVCLISDFYPGAVTVAW 152
>pdb|3S96|B Chain B, Crystal Structure Of 3b5h10
pdb|3S96|D Chain D, Crystal Structure Of 3b5h10
Length = 218
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 723 NRILTIPNVKVEDQGEYICRASND---------RSALESSVTISIQAEPNFTI--PLTDK 771
+R L+I N++ ED+ YIC + + +V ++ P T+ P +++
Sbjct: 74 DRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEE 133
Query: 772 HMDNQADLTWTCEAFGVPDVTYSWFRNG 799
+N+A L F VT +W NG
Sbjct: 134 LKENKATLVCLISNFSPSGVTVAWKANG 161
>pdb|2QHR|L Chain L, Crystal Structure Of The 13f6-1-2 Fab Fragment Bound To
Its Ebola Virus Glycoprotein Peptide Epitope
Length = 218
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 723 NRILTIPNVKVEDQGEYICRASND---------RSALESSVTISIQAEPNFTI--PLTDK 771
+R L+I N++ ED+ YIC + + +V ++ P T+ P +++
Sbjct: 74 DRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEE 133
Query: 772 HMDNQADLTWTCEAFGVPDVTYSWFRNG 799
+N+A L F VT +W NG
Sbjct: 134 LKENKATLVCLISNFSPSGVTVAWKANG 161
>pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIO|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIP|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIP|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIQ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
pdb|1WIQ|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
Length = 363
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 685 KAGDKVRLECVAFGYPVPSYNW----------------TRRGSPL-----PRNAYFENFN 723
K GD V L C A ++W T+ S L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 784 EA 785
E+
Sbjct: 119 ES 120
>pdb|2LS8|A Chain A, Solution Structure Of Human C-Type Lectin Domain Family
4 Member D
Length = 156
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
+ CP W ++ +CY F + KT +++ NC + + L ++ E FI+ L
Sbjct: 1 MVCPIDWRAFQSNCY-FPLTDNKTWAESERNCSGMGAHLMTISTEAEQNFIIQFL----- 54
Query: 87 QRRKWYFGG 95
RR YF G
Sbjct: 55 DRRLSYFLG 63
>pdb|1CDY|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Gly 47 Replaced By Ser
Length = 178
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 685 KAGDKVRLECVAFGYPVPSYNW----------------TRRGSPL-----PRNAYFENFN 723
K GD V L C A ++W T+ S L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKSPSKLNDRADSRRSLWDQGN 66
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 784 EA 785
E+
Sbjct: 119 ES 120
>pdb|1J87|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Hexagonal Crystal Form 1
Length = 172
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 687 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS- 744
G+ V L C + V S W GS E N L I N K ED GEY C+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGS------LSEETNSSLNIVNAKFEDSGEYKCQHQQ 72
Query: 745 ------------NDRSALESSVTISIQAEPNF 764
+D L++S + ++ +P F
Sbjct: 73 VNESEPVYLEVFSDWLLLQASAEVVMEGQPLF 104
>pdb|1J89|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|C Chain C, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|D Chain D, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|E Chain E, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J88|A Chain A, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|B Chain B, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|C Chain C, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|D Chain D, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|E Chain E, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
Length = 172
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 687 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS- 744
G+ V L C + V S W GS E N L I N K ED GEY C+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGS------LSEETNSSLNIVNAKFEDSGEYKCQHQQ 72
Query: 745 ------------NDRSALESSVTISIQAEPNF 764
+D L++S + ++ +P F
Sbjct: 73 VNESEPVYLEVFSDWLLLQASAEVVMEGQPLF 104
>pdb|1CDI|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
Length = 179
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 723
K GD V L C A ++W +GS L R + ++ N
Sbjct: 8 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 119
Query: 784 EA 785
E+
Sbjct: 120 ES 121
>pdb|1JL4|D Chain D, Crystal Structure Of The Human Cd4 N-Terminal Two Domain
Fragment Complexed To A Class Ii Mhc Molecule
pdb|1CDH|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
pdb|1CDJ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4
Length = 178
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 723
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 784 EA 785
E+
Sbjct: 119 ES 120
>pdb|1MPU|A Chain A, Crystal Structure Of The Free Human Nkg2d Immunoreceptor
Length = 138
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP++W+ Y+++CY+F K +++ +C S ++ L V ++ +
Sbjct: 21 CPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLL 68
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 188
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 687 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS- 744
G+ V L C + V S W GS E N L I N K ED GEY C+
Sbjct: 22 GENVTLTCNGNNFFEVSSTKWFHNGS------LSEETNSSLNIVNAKFEDSGEYKCQHQQ 75
Query: 745 ------------NDRSALESSVTISIQAEPNF 764
+D L++S + ++ +P F
Sbjct: 76 VAESEPVYLEVFSDWLLLQASAEVVMEGQPLF 107
>pdb|1BJ3|A Chain A, Crystal Structure Of Coagulation Factor Ix-Binding Protein
(Ix-Bp) From Venom Of Habu Snake With A Heterodimer Of
C-Type Lectin Domains
pdb|1J34|A Chain A, Crystal Structure Of Mg(Ii)-And Ca(Ii)-Bound Gla Domain Of
Factor Ix Complexed With Binding Protein
pdb|1J35|A Chain A, Crystal Structure Of Ca(Ii)-Bound Gla Domain Of Factor Ix
Complexed With Binding Protein
pdb|1X2T|A Chain A, Crystal Structure Of Habu Ix-Bp At Ph 6.5
pdb|1X2T|C Chain C, Crystal Structure Of Habu Ix-Bp At Ph 6.5
pdb|1X2W|A Chain A, Crystal Structure Of Apo-Habu Ix-Bp At Ph 4.6
Length = 129
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 25/142 (17%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY+ K KT +DA+ C ++ L ++ A E F+ QL ++
Sbjct: 2 CPSGWSSYEGHCYKPFKL-YKTWDDAERFCTEQAKGGHLVSIESAGEADFVA-QLVTENI 59
Query: 87 QRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFER 146
Q K Y +W+ G + + E +D Y + ++S G E+
Sbjct: 60 QNTKSY---------VWI---GLRVQGKEKQCSSEWSDGSSVSYENWIEAESKTCLGLEK 107
Query: 147 VTGMEPLL---------FICEA 159
TG + F+CEA
Sbjct: 108 ETGFRKWVNIYCGQQNPFVCEA 129
>pdb|2NXY|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein(S334a) Complexed With
Cd4 And Antibody 17b
pdb|2NXZ|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (t257s, S334a, S375w)
Complexed With Cd4 And Antibody 17b
pdb|2NY0|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (M95w, W96c, T257s,
V275c, S334a, S375w, A433m) Complexed With Cd4 And
Antibody 17b
pdb|2NY1|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (I109c, T257s, S334a,
S375w, Q428c) Complexed With Cd4 And Antibody 17b
pdb|2NY2|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (T123c, T257s, S334a,
S375w, G431c) Complexed With Cd4 And Antibody 17b
pdb|2NY3|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E267c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY4|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E268c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY5|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T257s, V275c, S334a, S375w, Q428c, A433m) Complexed With
Cd4 And Antibody 17b
pdb|2NY6|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T123c, T257s, V275c,s334a, S375w, Q428c, G431c)
Complexed With Cd4 And Antibody 17b
pdb|3JWD|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWD|D Chain D, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWO|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 184
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 723
K GD V L C A ++W +GS L R + ++ N
Sbjct: 8 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 119
Query: 784 EA 785
E+
Sbjct: 120 ES 121
>pdb|1HYR|B Chain B, Crystal Structure Of Human Mica In Complex With Natural
Killer Cell Receptor Nkg2d
pdb|1HYR|A Chain A, Crystal Structure Of Human Mica In Complex With Natural
Killer Cell Receptor Nkg2d
Length = 137
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP++W+ Y+++CY+F K +++ +C S ++ L V ++ +
Sbjct: 20 CPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLL 67
>pdb|3LQA|C Chain C, Crystal Structure Of Clade C Gp120 In Complex With Scd4
And
Length = 192
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 723
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 784 EA 785
E+
Sbjct: 119 ES 120
>pdb|1F2Q|A Chain A, Crystal Structure Of The Human High-Affinity Ige Receptor
pdb|1J86|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1J86|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1RPQ|A Chain A, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|B Chain B, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|C Chain C, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|D Chain D, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
Length = 176
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 687 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS- 744
G+ V L C + V S W GS E N L I N K ED GEY C+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGS------LSEETNSSLNIVNAKFEDSGEYKCQHQQ 72
Query: 745 ------------NDRSALESSVTISIQAEPNF 764
+D L++S + ++ +P F
Sbjct: 73 VNESEPVYLEVFSDWLLLQASAEVVMEGQPLF 104
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFENFNR---ILTIPNVKVEDQGEYICR 742
G C P W + L ++ Y + +N LTI VK +D+GEY R
Sbjct: 391 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 450
Query: 743 ASNDRSALESSVTISI--QAEP 762
A N E V +++ +EP
Sbjct: 451 AKNSYGTKEEIVFLNVTRHSEP 472
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + LSC G+ +P EW + RLV N I + R T + + E
Sbjct: 19 NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR-E 77
Query: 268 DRGSYHCKASNKFGSIISE 286
D G+Y C S + G+ E
Sbjct: 78 DTGTYTCMVSEEGGNSYGE 96
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVA--NLIDPLSDKRFTLSGGNLIINDPRQVE 540
N + LSC G+ +P EW + RLV N I + R T + + E
Sbjct: 19 NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR-E 77
Query: 541 DRGSYHCKASNKFGSIISE 559
D G+Y C S + G+ E
Sbjct: 78 DTGTYTCMVSEEGGNSYGE 96
>pdb|3O2D|A Chain A, Crystal Structure Of Hiv-1 Primary Receptor Cd4 In Complex
With A Potent Antiviral Antibody
Length = 188
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 723
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 784 EA 785
E+
Sbjct: 119 ES 120
>pdb|3CD4|A Chain A, Refinement And Analysis Of The First Two Domains Of Human
Cd4
Length = 182
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 723
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 784 EA 785
E+
Sbjct: 119 ES 120
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 687 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS- 744
G+ V L C + V S W GS E N L I N K ED GEY C+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGS------LSEETNSSLNIVNAKFEDSGEYKCQHQQ 72
Query: 745 ------------NDRSALESSVTISIQAEPNF 764
+D L++S + ++ +P F
Sbjct: 73 VAESEPVYLEVFSDWLLLQASAEVVMEGQPLF 104
>pdb|2B4C|C Chain C, Crystal Structure Of Hiv-1 Jr-fl Gp120 Core Protein
Containing The Third Variable Region (v3) Complexed With
Cd4 And The X5 Antibody
pdb|2QAD|B Chain B, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
pdb|2QAD|F Chain F, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
Length = 181
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 723
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 784 EA 785
E+
Sbjct: 119 ES 120
>pdb|1GC1|C Chain C, Hiv-1 Gp120 Core Complexed With Cd4 And A Neutralizing
Human Antibody
pdb|1G9M|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1G9N|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZJ|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZK|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
Length = 185
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTR---------RGSPL------------PRNAYFENFN 723
K GD V L C A ++W +GS L R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
L I N+K+ED YIC + + ++ V + A +D H+ LT T
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTAN-------SDTHLLQGQSLTLTL 118
Query: 784 EA 785
E+
Sbjct: 119 ES 120
>pdb|1KCG|A Chain A, Nkg2d In Complex With Ulbp3
pdb|1KCG|B Chain B, Nkg2d In Complex With Ulbp3
Length = 124
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI 77
CP++W+ Y+++CY+F K +++ +C S ++ L V ++ +
Sbjct: 7 CPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLL 54
>pdb|2ZPK|H Chain H, Crystal Structure Of P20.1 Fab Fragment In Complex With
Its Antigen Peptide
pdb|2ZPK|I Chain I, Crystal Structure Of P20.1 Fab Fragment In Complex With
Its Antigen Peptide
Length = 216
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 32/92 (34%), Gaps = 35/92 (38%)
Query: 681 PEAPKAGDKVRLECVAFGY-------------PVPSYNW-----TRRGSPLPRNAYFENF 722
PE K G+ VR+ C A GY P S W TR G P Y E+F
Sbjct: 9 PEVQKPGETVRISCKASGYTFTTAGMQWVQKMPGKSLKWIGWINTRSGVP----KYAEDF 64
Query: 723 N-------------RILTIPNVKVEDQGEYIC 741
L I N+K ED Y C
Sbjct: 65 KGRFAFSLETSASIAYLHINNLKNEDTATYFC 96
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 690 VRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 748
V+L C A P Y+WT LP+ +N P + G YIC A+N
Sbjct: 235 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGP-INYSLAGTYICEATNPIG 293
Query: 749 ALESSVTISIQAEP 762
V ++I P
Sbjct: 294 TRSGQVEVNITEFP 307
>pdb|4DCQ|A Chain A, Crystal Structure Of The Fab Fragment Of 3b5h10, An
Antibody-Specific For Extended Polyglutamine Repeats
(Orthorhombic Form)
Length = 218
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 723 NRILTIPNVKVEDQGEYICRASND---------RSALESSVTISIQAEPNFTI--PLTDK 771
+R L I N++ ED+ YIC + + +V ++ P T+ P +++
Sbjct: 73 DRYLLISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEE 132
Query: 772 HMDNQADLTWTCEAFGVPDVTYSWFRNG 799
+N+A L F VT +W NG
Sbjct: 133 LKENKATLVCLISNFSPSGVTVAWKANG 160
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 690 VRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 748
V+L C A P Y+WT LP+ +N P + G YIC A+N
Sbjct: 235 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGP-INYSLAGTYICEATNPIG 293
Query: 749 ALESSVTISIQAEP 762
V ++I P
Sbjct: 294 TRSGQVEVNITEFP 307
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFENFNR---ILTIPNVKVEDQGEYICR 742
G C P W + L ++ Y + +N LTI VK +D+GEY R
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 556
Query: 743 ASNDRSALESSVTISI 758
A N E V +++
Sbjct: 557 AKNSYGTKEEIVFLNV 572
>pdb|2ADF|H Chain H, Crystal Structure And Paratope Determination Of 82d6a3, An
Antithrombotic Antibody Directed Against The Von
Willebrand Factor A3-Domain
Length = 218
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 32/109 (29%)
Query: 681 PEAPKAGDKVRLECVAFGYPVPSY--NWTRRG------------SPLPRNAYFENF---- 722
PE K G+ V++ C A GY +Y NW ++ + Y E F
Sbjct: 9 PELKKPGETVKISCKASGYTFINYGMNWVKQAPGKGLKWMGWKNTNTGETTYGEEFRGRF 68
Query: 723 ---------NRILTIPNVKVEDQGEYICRASNDRSALE-----SSVTIS 757
L I N+K ED Y C N AL+ ++VT+S
Sbjct: 69 AFSLETSVSTAYLQINNLKNEDTATYFCARDNPYYALDYWGQGTTVTVS 117
>pdb|2BRR|H Chain H, Complex Of The Neisserial Pora P1.4 Epitope Peptide And
Two Fab-Fragments (Antibody Mn20b9.34)
pdb|2BRR|Y Chain Y, Complex Of The Neisserial Pora P1.4 Epitope Peptide And
Two Fab-Fragments (Antibody Mn20b9.34)
Length = 225
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 27/88 (30%)
Query: 681 PEAPKAGDKVRLECVAFGYPVPSY--NWTRR----------------GSPLPRNAYFENF 722
PE K G+ V++ C A GY +Y NW ++ G P + + E F
Sbjct: 9 PELKKPGETVKISCKASGYTFTNYGMNWVKQAPGKGLKWMGWINTYTGEPTYADDFKERF 68
Query: 723 ---------NRILTIPNVKVEDQGEYIC 741
L I N+K ED Y C
Sbjct: 69 AFSLETSASAAYLQINNLKNEDTATYFC 96
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 690 VRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 748
V+L C A P Y+WT LP+ +N P + G YIC A+N
Sbjct: 250 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGP-INYSLAGTYICEATNPIG 308
Query: 749 ALESSVTISI 758
V ++I
Sbjct: 309 TRSGQVEVNI 318
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 723 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT-- 780
N L +P V ++D+G + C+A N R+ E+ ++ + IP + +D+ ++LT
Sbjct: 431 NGSLFLPAVGIQDEGIFRCQAMN-RNGKETKSNYRVRV---YQIPGKPEIVDSASELTAG 486
Query: 781 -----WTCEAFGV-PDVTYSWFRNGE 800
TC + G P T SW +G+
Sbjct: 487 VPNKVGTCVSEGSYPAGTLSWHLDGK 512
>pdb|3GO1|L Chain L, Crystal Structure Of Anti-Hiv-1 Fab 268-D In Complex With
V3 Peptide Mn
Length = 209
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 704 YNWTRRGSPLPR--NAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL----ESSVTIS 757
Y T+R S +P + LTI V+ ED+ +Y C++++ + VT+
Sbjct: 48 YKDTKRPSGIPERFSGSTSGTTVTLTISGVQAEDEADYYCQSADSSGDYVFGGGTKVTVL 107
Query: 758 IQAEPNFTI----PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
Q + N T+ P +++ N+A L F VT +W +G
Sbjct: 108 GQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADG 153
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 690 VRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 748
V+L C A P Y+WT LP+ +N P + G YIC A+N
Sbjct: 236 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGP-INYSLAGTYICEATNPIG 294
Query: 749 ALESSVTISI 758
V ++I
Sbjct: 295 TRSGQVEVNI 304
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK---RFTLSGGNLIINDPRQVED 268
+T +C G P P WFK+ I P SD + L G + ++D
Sbjct: 26 VTFTCRVAGNPKPKIYWFKD--------GKQISPKSDHYTIQRDLDGTCSLHTTASTLDD 77
Query: 269 RGSYHCKASNKFGSI 283
G+Y A+N G I
Sbjct: 78 DGNYTIMAANPQGRI 92
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK---RFTLSGGNLIINDPRQVED 541
+T +C G P P WFK+ I P SD + L G + ++D
Sbjct: 26 VTFTCRVAGNPKPKIYWFKD--------GKQISPKSDHYTIQRDLDGTCSLHTTASTLDD 77
Query: 542 RGSYHCKASNKFGSI 556
G+Y A+N G I
Sbjct: 78 DGNYTIMAANPQGRI 92
>pdb|3PV6|A Chain A, Crystal Structure Of Nkp30 Bound To Its Ligand B7-H6
pdb|3PV7|A Chain A, Crystal Structure Of Nkp30 Ligand B7-H6
Length = 248
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 785
L +P +++E+ GEY C + +V + + A P + L M D + CE+
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENED-KYMCES 142
Query: 786 FG 787
G
Sbjct: 143 SG 144
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
Length = 121
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+L IND VED G+Y CK +++GS +E L
Sbjct: 67 SLRIND-LTVEDSGTYRCKPESRYGSYDAECAAL 99
Score = 29.6 bits (65), Expect = 7.4, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 530 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+L IND VED G+Y CK +++GS +E L
Sbjct: 67 SLRIND-LTVEDSGTYRCKPESRYGSYDAECAAL 99
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 725 ILTIPNVKVEDQGEY----ICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT 780
+ IP+V+V D G+Y IC A+ D L T+ ++A I + ++
Sbjct: 68 LFHIPSVQVRDSGQYRCLVICGAAWDYKYL----TVKVKAS-YMRIDTRILEVPGTGEVQ 122
Query: 781 WTCEAFGVPDVTYSW 795
TC+A G P SW
Sbjct: 123 LTCQARGYPLAEVSW 137
>pdb|2BPE|A Chain A, Structure Of Murine Dectin-1
pdb|2BPE|B Chain B, Structure Of Murine Dectin-1
pdb|2BPH|A Chain A, Structure Of Murine Dectin-1
pdb|2BPH|B Chain B, Structure Of Murine Dectin-1
Length = 140
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------- 81
C +W+ + SCY F S + +K +C L + L ++++ E FI Q
Sbjct: 8 CLPNWIMHGKSCYLFSFSG-NSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQTSSHRINA 66
Query: 82 FWQDPQRRKWYFGGTQQSPNLWVNEDGT 109
FW R QS W EDG+
Sbjct: 67 FWIGLSRN--------QSEGPWFWEDGS 86
>pdb|2CL8|A Chain A, Dectin-1 In Complex With Beta-Glucan
pdb|2CL8|B Chain B, Dectin-1 In Complex With Beta-Glucan
Length = 139
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------- 81
C +W+ + SCY F S + +K +C L + L ++++ E FI Q
Sbjct: 7 CLPNWIMHGKSCYLFSFSG-NSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQTSSHRINA 65
Query: 82 FWQDPQRRKWYFGGTQQSPNLWVNEDGT 109
FW R QS W EDG+
Sbjct: 66 FWIGLSRN--------QSEGPWFWEDGS 85
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 725 ILTIPNVKVEDQGEY----ICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLT 780
+ IP+V+V D G+Y IC A+ D L T+ ++A I + ++
Sbjct: 67 LFHIPSVQVRDSGQYRCLVICGAAWDYKYL----TVKVKAS-YMRIDTRILEVPGTGEVQ 121
Query: 781 WTCEAFGVPDVTYSW 795
TC+A G P SW
Sbjct: 122 LTCQARGYPLAEVSW 136
>pdb|2VUV|A Chain A, Crystal Structure Of Codakine At 1.3a Resolution
pdb|2VUZ|A Chain A, Crystal Structure Of Codakine In Complex With
Biantennary Nonasaccharide At 1.7a Resolution
Length = 129
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMY 79
CP W Q+ D CY + +S + A+ +C++L LA + A E+ +++
Sbjct: 2 CPDGWTQFLDLCYIY-QSAKASWASAQSSCQALGGILAEPDTACENEVLIH 51
>pdb|2GJJ|A Chain A, Crystal Structure Of A Single Chain Antibody Sca21 Against
Her2ERBB2
pdb|2GJJ|B Chain B, Crystal Structure Of A Single Chain Antibody Sca21 Against
Her2ERBB2
Length = 264
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSY--NWTRRGS 438
PE K G V++ C A GY Y NW ++ S
Sbjct: 147 PEVVKTGASVKISCKASGYSFTGYFINWVKKNS 179
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 681 PEAPKAGDKVRLECVAFGYPVPSY--NWTRRGS 711
PE K G V++ C A GY Y NW ++ S
Sbjct: 147 PEVVKTGASVKISCKASGYSFTGYFINWVKKNS 179
>pdb|3H3B|C Chain C, Crystal Structure Of The Single-Chain Fv (Scfv) Fragment
Of An Anti- Erbb2 Antibody Cha21 In Complex With
Residues 1-192 Of Erbb2 Extracellular Domain
pdb|3H3B|D Chain D, Crystal Structure Of The Single-Chain Fv (Scfv) Fragment
Of An Anti- Erbb2 Antibody Cha21 In Complex With
Residues 1-192 Of Erbb2 Extracellular Domain
Length = 259
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSY--NWTRRGS 438
PE K G V++ C A GY Y NW ++ S
Sbjct: 148 PEVVKTGASVKISCKASGYSFTGYFINWVKKNS 180
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 681 PEAPKAGDKVRLECVAFGYPVPSY--NWTRRGS 711
PE K G V++ C A GY Y NW ++ S
Sbjct: 148 PEVVKTGASVKISCKASGYSFTGYFINWVKKNS 180
>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like Domain
Of Nectin-1
Length = 95
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 690 VRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 748
V+L C A P Y+WT LP+ +N P + G YIC A+N
Sbjct: 25 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGP-ITYSLAGTYICEATNPIG 83
Query: 749 ALESSVTISI 758
V ++I
Sbjct: 84 TRSGQVEVNI 93
>pdb|1JA3|A Chain A, Crystal Structure Of The Murine Nk Cell Inhibitory
Receptor Ly-49i
pdb|1JA3|B Chain B, Crystal Structure Of The Murine Nk Cell Inhibitory
Receptor Ly-49i
Length = 127
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW 83
R ++W Y CY F+ + T + K NC+ + + D DE F+ + +W
Sbjct: 3 RGVKYWFCYGTKCYYFIMNK-TTWSGCKANCQHYSVPIVKIEDEDELKFLQRHVIPEGYW 61
Query: 84 ----QDPQRRKW 91
D ++++W
Sbjct: 62 IGLSYDKKKKEW 73
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK---RFTLSGGNLIINDPRQVED 268
+T +C G P P WFK+ I P SD + L G + ++D
Sbjct: 25 VTFTCRVAGNPKPKIYWFKD--------GKQISPKSDHYTIQRDLDGTCSLHTTASTLDD 76
Query: 269 RGSYHCKASNKFGSI 283
G+Y A+N G +
Sbjct: 77 DGNYTIMAANPQGRV 91
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK---RFTLSGGNLIINDPRQVED 541
+T +C G P P WFK+ I P SD + L G + ++D
Sbjct: 25 VTFTCRVAGNPKPKIYWFKD--------GKQISPKSDHYTIQRDLDGTCSLHTTASTLDD 76
Query: 542 RGSYHCKASNKFGSI 556
G+Y A+N G +
Sbjct: 77 DGNYTIMAANPQGRV 91
>pdb|1X3Z|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex
Length = 335
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 151 EPLLFICEASIQKLHYLLNDDRTYQYGM-DIENPDKIPRGP 190
E L F+C+ ++L Y LNDD YQ D + ++ RG
Sbjct: 280 EDLKFLCQFITKRLRYSLNDDEIYQLACRDEQEQIELIRGK 320
>pdb|1X3W|A Chain A, Structure Of A Peptide:n-Glycanase-Rad23 Complex
Length = 335
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 151 EPLLFICEASIQKLHYLLNDDRTYQYGM-DIENPDKIPRGP 190
E L F+C+ ++L Y LNDD YQ D + ++ RG
Sbjct: 280 EDLKFLCQFITKRLRYSLNDDEIYQLACRDEQEQIELIRGK 320
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,928,233
Number of Sequences: 62578
Number of extensions: 1344177
Number of successful extensions: 5562
Number of sequences better than 100.0: 263
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 219
Number of HSP's that attempted gapping in prelim test: 4528
Number of HSP's gapped (non-prelim): 839
length of query: 813
length of database: 14,973,337
effective HSP length: 107
effective length of query: 706
effective length of database: 8,277,491
effective search space: 5843908646
effective search space used: 5843908646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)