Query psy14896
Match_columns 813
No_of_seqs 478 out of 3653
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 23:34:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 4.7E-69 1E-73 583.0 54.5 544 190-766 40-619 (1051)
2 KOG3513|consensus 100.0 2.2E-55 4.7E-60 476.9 41.6 464 312-806 59-563 (1051)
3 KOG4222|consensus 100.0 3.5E-49 7.7E-54 422.1 29.0 466 188-760 30-510 (1281)
4 KOG4221|consensus 100.0 3.3E-43 7.1E-48 378.6 39.4 502 189-803 41-561 (1381)
5 KOG4221|consensus 100.0 4.7E-38 1E-42 339.1 38.1 474 150-759 111-609 (1381)
6 KOG4222|consensus 100.0 6.2E-38 1.3E-42 336.2 26.7 409 298-806 34-465 (1281)
7 KOG4194|consensus 100.0 2.1E-30 4.6E-35 260.5 22.5 272 480-764 516-801 (873)
8 PHA02785 IL-beta-binding prote 100.0 2.9E-29 6.2E-34 256.5 26.9 246 480-749 39-317 (326)
9 KOG3515|consensus 100.0 2.1E-28 4.5E-33 260.5 30.9 570 207-809 20-642 (741)
10 KOG4194|consensus 100.0 4.3E-29 9.4E-34 251.1 20.1 229 189-440 503-748 (873)
11 PHA02785 IL-beta-binding prote 100.0 1.1E-27 2.3E-32 245.0 26.2 211 208-442 40-266 (326)
12 TIGR00864 PCC polycystin catio 99.9 3.3E-21 7.1E-26 229.1 47.1 128 27-161 316-448 (2740)
13 cd03599 CLECT_DGCR2_like C-typ 99.9 3.3E-24 7.1E-29 188.9 11.4 128 29-159 1-153 (153)
14 cd03588 CLECT_CSPGs C-type lec 99.9 5.3E-24 1.2E-28 186.0 11.9 121 29-159 1-123 (124)
15 cd03597 CLECT_attractin_like C 99.9 7.6E-24 1.6E-28 185.2 11.8 124 29-159 1-129 (129)
16 KOG3515|consensus 99.9 1.1E-22 2.3E-27 217.2 21.2 469 304-804 16-540 (741)
17 cd03589 CLECT_CEL-1_like C-typ 99.9 3.5E-23 7.6E-28 185.7 12.5 128 29-159 1-137 (137)
18 PHA02642 C-type lectin-like pr 99.9 9.5E-23 2.1E-27 185.6 13.6 124 20-161 79-202 (216)
19 cd03590 CLECT_DC-SIGN_like C-t 99.9 1E-22 2.2E-27 180.0 13.2 122 29-159 1-126 (126)
20 cd03594 CLECT_REG-1_like C-typ 99.9 8.3E-23 1.8E-27 181.1 12.4 126 29-159 1-129 (129)
21 cd03593 CLECT_NK_receptors_lik 99.9 2.8E-22 6E-27 174.0 12.1 116 29-159 1-116 (116)
22 cd03596 CLECT_tetranectin_like 99.9 3.5E-22 7.5E-27 176.1 11.6 124 29-158 1-128 (129)
23 PHA02953 IEV and EEV membrane 99.9 1E-21 2.3E-26 175.8 12.4 119 25-160 43-167 (170)
24 PHA03097 C-type lectin-like pr 99.9 2.2E-21 4.7E-26 172.8 13.7 118 21-160 38-155 (157)
25 PHA02826 IL-1 receptor-like pr 99.9 9.1E-21 2E-25 180.8 14.9 156 576-749 30-213 (227)
26 cd03598 CLECT_EMBP_like C-type 99.8 4.7E-20 1E-24 159.2 12.0 113 38-158 1-116 (117)
27 PHA02826 IL-1 receptor-like pr 99.8 2.8E-19 6.1E-24 170.6 15.4 162 198-374 31-211 (227)
28 PHA02867 C-type lectin protein 99.8 1.1E-19 2.3E-24 159.5 11.4 114 23-161 43-156 (167)
29 cd03591 CLECT_collectin_like C 99.8 1.1E-19 2.5E-24 156.1 11.3 112 38-158 1-113 (114)
30 cd03603 CLECT_VCBS A bacterial 99.8 1.7E-19 3.6E-24 155.4 11.7 114 39-158 1-117 (118)
31 smart00034 CLECT C-type lectin 99.8 2.7E-19 5.8E-24 158.7 11.5 124 29-158 1-126 (126)
32 cd03592 CLECT_selectins_like C 99.8 6.7E-19 1.5E-23 151.9 10.4 113 41-159 3-115 (115)
33 cd03601 CLECT_TC14_like C-type 99.8 1.3E-18 2.7E-23 150.3 11.5 111 41-159 3-119 (119)
34 cd03595 CLECT_chondrolectin_li 99.8 3.3E-18 7.2E-23 153.9 11.5 120 36-158 8-148 (149)
35 cd03600 CLECT_thrombomodulin_l 99.7 1.4E-17 3.1E-22 149.0 12.8 122 36-160 2-140 (141)
36 cd03602 CLECT_1 C-type lectin 99.7 6.6E-18 1.4E-22 143.8 9.8 108 39-159 1-108 (108)
37 cd05762 Ig8_MLCK Eighth immuno 99.7 1.8E-17 3.9E-22 136.7 10.4 86 680-765 8-97 (98)
38 cd05851 Ig3_Contactin-1 Third 99.7 7.5E-17 1.6E-21 130.4 9.8 79 681-759 10-88 (88)
39 cd05850 Ig1_Contactin-2 First 99.7 5E-16 1.1E-20 127.4 11.9 93 189-291 1-93 (94)
40 cd05848 Ig1_Contactin-5 First 99.7 7.6E-16 1.6E-20 126.2 11.3 93 189-291 1-93 (94)
41 cd05852 Ig5_Contactin-1 Fifth 99.7 4.3E-16 9.3E-21 120.3 9.1 72 687-758 1-73 (73)
42 cd05849 Ig1_Contactin-1 First 99.7 9.3E-16 2E-20 125.0 11.3 92 189-291 1-92 (93)
43 cd05745 Ig3_Peroxidasin Third 99.6 6.3E-16 1.4E-20 120.9 8.6 73 686-758 1-74 (74)
44 cd05735 Ig8_DSCAM Eight immuno 99.6 1.8E-15 3.8E-20 122.3 10.9 78 687-764 1-87 (88)
45 cd05728 Ig4_Contactin-2-like F 99.6 1E-15 2.2E-20 123.2 9.4 79 680-758 7-85 (85)
46 cd05851 Ig3_Contactin-1 Third 99.6 2E-15 4.2E-20 122.1 10.9 87 189-292 1-87 (88)
47 cd04975 Ig4_SCFR_like Fourth i 99.6 9.3E-16 2E-20 126.4 9.1 78 682-759 13-100 (101)
48 cd05863 Ig2_VEGFR-3 Second imm 99.6 1E-15 2.2E-20 114.8 8.2 66 690-759 1-66 (67)
49 cd05892 Ig_Myotilin_C C-termin 99.6 1.2E-15 2.6E-20 118.1 8.6 69 690-758 1-75 (75)
50 cd05867 Ig4_L1-CAM_like Fourth 99.6 2.3E-15 5E-20 118.4 10.1 72 687-758 1-75 (76)
51 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 2.3E-15 5.1E-20 120.8 9.4 77 682-758 5-86 (86)
52 cd05854 Ig6_Contactin-2 Sixth 99.6 4.3E-15 9.3E-20 119.0 10.3 75 688-762 1-85 (85)
53 cd05868 Ig4_NrCAM Fourth immun 99.6 3.5E-15 7.6E-20 116.9 9.5 73 687-759 1-76 (76)
54 cd05762 Ig8_MLCK Eighth immuno 99.6 5.7E-15 1.2E-19 121.8 11.2 91 190-297 1-95 (98)
55 cd04976 Ig2_VEGFR Second immun 99.6 3E-15 6.5E-20 115.4 8.8 70 690-759 1-70 (71)
56 cd05893 Ig_Palladin_C C-termin 99.6 2.4E-15 5.3E-20 116.7 8.1 69 690-758 1-75 (75)
57 cd05853 Ig6_Contactin-4 Sixth 99.6 3.8E-15 8.3E-20 117.3 9.1 75 688-762 1-85 (85)
58 cd05737 Ig_Myomesin_like_C C-t 99.6 3.3E-15 7.1E-20 122.5 8.8 77 682-758 11-92 (92)
59 cd05859 Ig4_PDGFR-alpha Fourth 99.6 2.9E-15 6.2E-20 123.8 8.3 78 682-759 13-100 (101)
60 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 6.5E-15 1.4E-19 112.4 9.1 69 687-757 1-69 (69)
61 cd05723 Ig4_Neogenin Fourth im 99.6 5.2E-15 1.1E-19 114.4 8.7 70 689-758 1-71 (71)
62 cd04968 Ig3_Contactin_like Thi 99.6 8.8E-15 1.9E-19 119.0 9.9 78 682-759 11-88 (88)
63 cd05864 Ig2_VEGFR-2 Second imm 99.6 5.9E-15 1.3E-19 112.3 8.3 69 690-759 1-69 (70)
64 cd04978 Ig4_L1-NrCAM_like Four 99.6 9.4E-15 2E-19 115.5 9.7 72 687-758 1-75 (76)
65 cd05730 Ig3_NCAM-1_like Third 99.6 1.3E-14 2.8E-19 120.1 10.6 79 682-760 13-94 (95)
66 cd05855 Ig_TrkB_d5 Fifth domai 99.6 9.5E-15 2.1E-19 113.2 8.6 67 691-757 2-77 (79)
67 cd04969 Ig5_Contactin_like Fif 99.6 1.1E-14 2.5E-19 113.5 9.1 72 687-758 1-73 (73)
68 cd05857 Ig2_FGFR Second immuno 99.6 1.5E-14 3.2E-19 117.1 10.0 77 682-758 4-85 (85)
69 cd05876 Ig3_L1-CAM Third immun 99.6 1.1E-14 2.4E-19 112.6 8.7 70 690-759 1-71 (71)
70 cd05865 Ig1_NCAM-1 First immun 99.6 1.8E-14 4E-19 117.7 10.3 77 682-758 10-95 (96)
71 cd05725 Ig3_Robo Third immunog 99.6 1.3E-14 2.8E-19 111.8 8.9 69 690-758 1-69 (69)
72 cd05748 Ig_Titin_like Immunogl 99.6 1.8E-14 3.9E-19 112.8 9.5 70 689-758 1-74 (74)
73 cd04972 Ig_TrkABC_d4 Fourth do 99.6 1.8E-14 4E-19 117.5 9.9 77 682-758 10-90 (90)
74 cd05744 Ig_Myotilin_C_like Imm 99.6 1.5E-14 3.3E-19 112.9 8.9 69 690-758 1-75 (75)
75 cd05773 Ig8_hNephrin_like Eigh 99.6 2.2E-14 4.8E-19 121.0 10.5 79 685-763 21-109 (109)
76 cd04973 Ig1_FGFR First immunog 99.6 2E-14 4.2E-19 113.8 9.6 76 682-758 4-79 (79)
77 cd05747 Ig5_Titin_like M5, fif 99.6 2E-14 4.4E-19 117.8 9.9 79 679-757 10-92 (92)
78 cd05746 Ig4_Peroxidasin Fourth 99.6 1.1E-14 2.4E-19 111.9 7.8 68 690-757 1-69 (69)
79 cd04970 Ig6_Contactin_like Six 99.5 2.2E-14 4.8E-19 115.7 9.3 75 688-762 1-85 (85)
80 cd05852 Ig5_Contactin-1 Fifth 99.5 2.5E-14 5.3E-19 110.5 8.5 72 209-292 1-73 (73)
81 cd05732 Ig5_NCAM-1_like Fifth 99.5 3.8E-14 8.3E-19 117.8 9.9 78 681-758 10-96 (96)
82 cd05745 Ig3_Peroxidasin Third 99.5 2.3E-14 5.1E-19 112.0 8.0 73 208-292 1-74 (74)
83 cd05869 Ig5_NCAM-1 Fifth immun 99.5 3.3E-14 7.1E-19 117.9 8.9 75 684-758 14-97 (97)
84 cd05760 Ig2_PTK7 Second immuno 99.5 3.3E-14 7.2E-19 111.8 8.6 70 690-759 1-75 (77)
85 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 4.2E-14 9.1E-19 111.5 9.1 68 691-758 2-80 (81)
86 cd05740 Ig_CEACAM_D4 Fourth im 99.5 7.7E-14 1.7E-18 113.1 10.3 78 681-759 12-91 (91)
87 cd05728 Ig4_Contactin-2-like F 99.5 6.3E-14 1.4E-18 112.8 9.6 84 192-292 2-85 (85)
88 cd04967 Ig1_Contactin First Ig 99.5 8.7E-14 1.9E-18 113.8 10.5 89 190-288 2-90 (91)
89 cd05870 Ig5_NCAM-2 Fifth immun 99.5 4.6E-14 9.9E-19 117.2 8.8 78 681-758 10-98 (98)
90 PHA02911 C-type lectin-like pr 99.5 6.4E-14 1.4E-18 122.3 9.7 108 27-160 101-210 (213)
91 cd05856 Ig2_FGFRL1-like Second 99.5 6.6E-14 1.4E-18 112.8 9.2 76 683-758 5-82 (82)
92 cd05867 Ig4_L1-CAM_like Fourth 99.5 8.7E-14 1.9E-18 109.4 9.5 75 209-292 1-75 (76)
93 PF07679 I-set: Immunoglobulin 99.5 1.7E-14 3.8E-19 118.5 5.8 78 681-758 9-90 (90)
94 cd05726 Ig4_Robo Fhird immunog 99.5 9.7E-14 2.1E-18 113.3 10.1 75 687-761 1-84 (90)
95 cd00037 CLECT C-type lectin (C 99.5 7.9E-14 1.7E-18 121.3 10.3 115 39-159 1-116 (116)
96 cd05891 Ig_M-protein_C C-termi 99.5 8.8E-14 1.9E-18 113.6 9.4 77 682-758 11-92 (92)
97 cd05743 Ig_Perlecan_D2_like Im 99.5 8.3E-14 1.8E-18 110.1 8.8 72 687-758 1-76 (78)
98 cd05731 Ig3_L1-CAM_like Third 99.5 6.1E-14 1.3E-18 109.2 7.9 70 690-759 1-71 (71)
99 cd04968 Ig3_Contactin_like Thi 99.5 2.1E-13 4.6E-18 110.9 11.2 87 189-292 1-87 (88)
100 cd07702 Ig2_VEGFR-1 Second imm 99.5 9.4E-14 2E-18 105.7 8.2 68 690-757 1-69 (72)
101 cd05763 Ig_1 Subgroup of the i 99.5 1.2E-13 2.6E-18 108.4 9.0 70 690-759 1-75 (75)
102 cd04974 Ig3_FGFR Third immunog 99.5 8.5E-14 1.9E-18 113.3 8.1 73 687-759 1-90 (90)
103 cd05892 Ig_Myotilin_C C-termin 99.5 1.2E-13 2.6E-18 106.9 8.4 70 212-292 1-75 (75)
104 cd05749 Ig2_Tyro3_like Second 99.5 1.4E-13 2.9E-18 108.2 8.8 72 681-756 7-80 (81)
105 cd07693 Ig1_Robo First immunog 99.5 1.9E-13 4.1E-18 115.1 10.3 95 189-292 1-99 (100)
106 cd05866 Ig1_NCAM-2 First immun 99.5 1.3E-13 2.7E-18 111.5 8.6 76 682-758 10-91 (92)
107 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 1.4E-13 2.9E-18 107.5 8.5 70 690-759 1-74 (74)
108 cd05747 Ig5_Titin_like M5, fif 99.5 2.4E-13 5.3E-18 111.4 10.4 85 189-290 3-91 (92)
109 cd05893 Ig_Palladin_C C-termin 99.5 1.4E-13 3E-18 106.8 8.2 70 212-292 1-75 (75)
110 cd05868 Ig4_NrCAM Fourth immun 99.5 2E-13 4.4E-18 106.9 9.2 75 209-292 1-75 (76)
111 cd05764 Ig_2 Subgroup of the i 99.5 1.9E-13 4.2E-18 107.1 9.0 72 687-758 1-74 (74)
112 cd05722 Ig1_Neogenin First imm 99.5 3E-13 6.6E-18 111.7 10.2 89 192-292 2-95 (95)
113 cd05863 Ig2_VEGFR-3 Second imm 99.5 1.3E-13 2.8E-18 103.4 6.9 65 212-292 1-65 (67)
114 cd05723 Ig4_Neogenin Fourth im 99.5 2.8E-13 6E-18 104.7 9.0 70 211-292 1-71 (71)
115 cd05749 Ig2_Tyro3_like Second 99.5 2.3E-13 5.1E-18 106.9 8.4 79 192-290 1-80 (81)
116 cd05850 Ig1_Contactin-2 First 99.5 4.1E-13 8.9E-18 110.1 10.0 72 685-756 17-92 (94)
117 cd04975 Ig4_SCFR_like Fourth i 99.5 2.3E-13 5.1E-18 112.1 8.5 80 198-293 12-100 (101)
118 cd05756 Ig1_IL1R_like First im 99.5 2.6E-13 5.6E-18 110.6 8.3 77 682-758 9-94 (94)
119 cd05858 Ig3_FGFR-2 Third immun 99.4 3.3E-13 7.2E-18 110.0 8.9 72 687-758 1-89 (90)
120 cd05740 Ig_CEACAM_D4 Fourth im 99.4 5.5E-13 1.2E-17 108.2 10.0 85 190-292 2-90 (91)
121 cd05849 Ig1_Contactin-1 First 99.4 3.2E-13 6.9E-18 110.0 8.7 72 686-757 18-92 (93)
122 cd05735 Ig8_DSCAM Eight immuno 99.4 4.5E-13 9.7E-18 108.2 9.3 78 209-297 1-86 (88)
123 cd05736 Ig2_Follistatin_like S 99.4 5.7E-13 1.2E-17 105.0 9.4 71 690-760 1-75 (76)
124 cd05724 Ig2_Robo Second immuno 99.4 5.5E-13 1.2E-17 108.3 9.1 77 682-758 6-86 (86)
125 cd05848 Ig1_Contactin-5 First 99.4 1.8E-12 3.8E-17 106.3 12.0 92 462-563 1-92 (94)
126 cd05722 Ig1_Neogenin First imm 99.4 5.3E-13 1.2E-17 110.3 9.0 77 682-758 9-95 (95)
127 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 5.9E-13 1.3E-17 106.9 9.0 73 209-292 10-86 (86)
128 cd05758 Ig5_KIRREL3-like Fifth 99.4 7.1E-13 1.5E-17 110.1 9.4 75 682-756 11-97 (98)
129 cd07693 Ig1_Robo First immunog 99.4 5.3E-13 1.1E-17 112.3 8.7 78 681-758 10-99 (100)
130 cd05727 Ig2_Contactin-2-like S 99.4 8.3E-13 1.8E-17 105.8 9.2 82 302-383 10-92 (96)
131 cd04969 Ig5_Contactin_like Fif 99.4 6.2E-13 1.4E-17 103.6 8.4 72 209-292 1-73 (73)
132 PF07679 I-set: Immunoglobulin 99.4 7.6E-13 1.7E-17 108.7 9.4 86 190-292 1-90 (90)
133 cd04976 Ig2_VEGFR Second immun 99.4 6E-13 1.3E-17 102.5 8.0 69 212-292 1-69 (71)
134 cd05750 Ig_Pro_neuregulin Immu 99.4 6.2E-13 1.3E-17 104.8 8.0 67 690-756 1-75 (75)
135 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 7E-13 1.5E-17 103.4 8.2 72 212-292 1-73 (74)
136 cd05870 Ig5_NCAM-2 Fifth immun 99.4 1.4E-12 3.1E-17 108.2 10.4 91 189-292 2-98 (98)
137 cd05859 Ig4_PDGFR-alpha Fourth 99.4 7.1E-13 1.5E-17 109.6 8.3 82 210-293 19-100 (101)
138 cd05773 Ig8_hNephrin_like Eigh 99.4 1.5E-12 3.3E-17 109.8 10.4 96 189-296 4-108 (109)
139 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 1.1E-12 2.4E-17 100.1 8.5 68 209-290 1-68 (69)
140 cd05765 Ig_3 Subgroup of the i 99.4 1.2E-12 2.6E-17 104.9 9.2 72 687-758 1-81 (81)
141 cd05876 Ig3_L1-CAM Third immun 99.4 8.9E-13 1.9E-17 101.8 8.0 70 212-292 1-70 (71)
142 cd05869 Ig5_NCAM-1 Fifth immun 99.4 2E-12 4.4E-17 107.1 10.7 92 189-292 2-97 (97)
143 cd04978 Ig4_L1-NrCAM_like Four 99.4 1.3E-12 2.7E-17 103.2 8.9 75 209-292 1-75 (76)
144 cd05737 Ig_Myomesin_like_C C-t 99.4 1.7E-12 3.7E-17 106.3 9.5 81 196-291 8-91 (92)
145 cd05744 Ig_Myotilin_C_like Imm 99.4 1.5E-12 3.3E-17 101.5 8.6 70 212-292 1-75 (75)
146 cd05727 Ig2_Contactin-2-like S 99.4 1.5E-12 3.2E-17 104.4 8.7 77 575-651 10-87 (96)
147 cd05730 Ig3_NCAM-1_like Third 99.4 3.1E-12 6.8E-17 105.8 10.9 88 190-293 2-93 (95)
148 cd04973 Ig1_FGFR First immunog 99.4 2.6E-12 5.6E-17 101.6 9.9 77 197-291 2-78 (79)
149 cd05742 Ig1_VEGFR_like First i 99.4 2E-12 4.3E-17 104.0 9.4 73 687-759 1-84 (84)
150 cd05865 Ig1_NCAM-1 First immun 99.4 3.3E-12 7.2E-17 104.4 10.7 82 195-292 6-95 (96)
151 cd05853 Ig6_Contactin-4 Sixth 99.4 1.7E-12 3.6E-17 102.3 8.6 78 210-296 1-85 (85)
152 cd07702 Ig2_VEGFR-1 Second imm 99.4 1.4E-12 3.1E-17 99.2 7.8 70 212-291 1-71 (72)
153 cd05864 Ig2_VEGFR-2 Second imm 99.4 1.3E-12 2.9E-17 99.4 7.5 67 212-291 1-67 (70)
154 cd05854 Ig6_Contactin-2 Sixth 99.4 2.3E-12 4.9E-17 103.2 9.3 78 210-296 1-85 (85)
155 cd05874 Ig6_NrCAM Sixth immuno 99.4 1.7E-12 3.7E-17 101.7 8.3 70 212-290 1-76 (77)
156 cd04972 Ig_TrkABC_d4 Fourth do 99.4 2.8E-12 6E-17 104.7 9.9 84 194-292 5-90 (90)
157 cd05724 Ig2_Robo Second immuno 99.4 2.7E-12 5.8E-17 104.3 9.7 83 195-292 2-86 (86)
158 cd05875 Ig6_hNeurofascin_like 99.4 2E-12 4.4E-17 101.3 8.5 72 212-291 1-77 (77)
159 cd05866 Ig1_NCAM-2 First immun 99.4 3.5E-12 7.5E-17 103.1 10.0 82 194-292 5-91 (92)
160 cd05733 Ig6_L1-CAM_like Sixth 99.4 2E-12 4.3E-17 101.7 8.2 66 690-755 1-75 (77)
161 cd05733 Ig6_L1-CAM_like Sixth 99.4 1.6E-12 3.5E-17 102.2 7.7 71 212-290 1-76 (77)
162 cd05725 Ig3_Robo Third immunog 99.4 2.4E-12 5.2E-17 99.1 8.5 69 212-292 1-69 (69)
163 cd05874 Ig6_NrCAM Sixth immuno 99.4 2.9E-12 6.3E-17 100.4 8.8 67 690-756 1-76 (77)
164 cd05734 Ig7_DSCAM Seventh immu 99.4 2.4E-12 5.1E-17 102.2 8.4 69 690-758 1-79 (79)
165 cd05746 Ig4_Peroxidasin Fourth 99.4 1.8E-12 3.8E-17 99.6 7.4 67 212-290 1-68 (69)
166 PF00059 Lectin_C: Lectin C-ty 99.4 2.8E-12 6.1E-17 109.1 9.4 102 48-159 2-105 (105)
167 cd04977 Ig1_NCAM-1_like First 99.4 3.3E-12 7.2E-17 104.2 8.9 76 682-758 10-92 (92)
168 cd05760 Ig2_PTK7 Second immuno 99.4 4.2E-12 9.2E-17 99.8 9.1 71 212-292 1-74 (77)
169 cd05857 Ig2_FGFR Second immuno 99.4 3.2E-12 7E-17 103.4 8.6 78 208-292 8-85 (85)
170 cd05732 Ig5_NCAM-1_like Fifth 99.3 6.5E-12 1.4E-16 104.3 10.3 91 189-292 2-96 (96)
171 cd05748 Ig_Titin_like Immunogl 99.3 5.1E-12 1.1E-16 98.9 9.0 69 212-292 2-74 (74)
172 cd05756 Ig1_IL1R_like First im 99.3 3.8E-12 8.2E-17 103.7 8.3 76 209-292 14-94 (94)
173 cd05875 Ig6_hNeurofascin_like 99.3 4.6E-12 9.9E-17 99.2 8.2 63 690-752 1-71 (77)
174 cd05763 Ig_1 Subgroup of the i 99.3 5.4E-12 1.2E-16 99.0 8.4 72 212-292 1-74 (75)
175 cd05855 Ig_TrkB_d5 Fifth domai 99.3 3.9E-12 8.5E-17 98.6 7.5 75 214-291 3-77 (79)
176 cd05764 Ig_2 Subgroup of the i 99.3 6.4E-12 1.4E-16 98.4 8.7 73 209-292 1-74 (74)
177 cd05757 Ig2_IL1R_like Second i 99.3 4.3E-12 9.2E-17 102.6 7.5 78 682-759 5-87 (92)
178 cd05895 Ig_Pro_neuregulin-1 Im 99.3 6.3E-12 1.4E-16 98.9 8.1 67 690-756 1-76 (76)
179 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 1.7E-11 3.6E-16 98.0 10.4 73 687-759 1-83 (84)
180 cd04970 Ig6_Contactin_like Six 99.3 9.5E-12 2.1E-16 100.3 9.1 78 210-296 1-85 (85)
181 cd05754 Ig3_Perlecan_like Thir 99.3 9.5E-12 2.1E-16 100.4 9.1 73 682-756 11-84 (85)
182 cd04967 Ig1_Contactin First Ig 99.3 8.4E-12 1.8E-16 102.1 8.8 68 685-752 17-87 (91)
183 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 6.9E-12 1.5E-16 98.9 7.8 76 214-291 3-79 (81)
184 cd05771 IgC_Tapasin_R Tapasin- 99.3 1.7E-11 3.6E-16 109.5 11.2 112 625-747 2-131 (139)
185 cd05731 Ig3_L1-CAM_like Third 99.3 6.7E-12 1.4E-16 97.6 7.6 70 212-292 1-70 (71)
186 cd05752 Ig1_FcgammaR_like Frst 99.3 3.9E-12 8.5E-17 99.4 5.8 68 682-758 10-78 (78)
187 cd05752 Ig1_FcgammaR_like Frst 99.3 1.1E-11 2.4E-16 96.9 8.2 77 190-292 1-78 (78)
188 cd05891 Ig_M-protein_C C-termi 99.3 1.8E-11 3.8E-16 99.9 9.6 81 196-291 8-91 (92)
189 cd05743 Ig_Perlecan_D2_like Im 99.3 1.1E-11 2.5E-16 97.8 8.0 66 209-285 1-70 (78)
190 cd05729 Ig2_FGFR_like Second i 99.3 1.7E-11 3.6E-16 99.5 9.0 77 682-758 4-85 (85)
191 cd05726 Ig4_Robo Fhird immunog 99.3 1E-11 2.2E-16 101.3 7.8 79 583-665 1-85 (90)
192 cd05734 Ig7_DSCAM Seventh immu 99.3 1.2E-11 2.6E-16 98.1 7.9 78 212-292 1-79 (79)
193 cd05845 Ig2_L1-CAM_like Second 99.3 1.4E-11 3E-16 98.6 8.2 75 302-377 10-85 (95)
194 cd04974 Ig3_FGFR Third immunog 99.3 1.2E-11 2.6E-16 100.7 7.8 78 209-292 1-89 (90)
195 cd05898 Ig5_KIRREL3 Fifth immu 99.3 3.2E-11 6.9E-16 97.8 9.6 76 681-756 10-97 (98)
196 cd05873 Ig_Sema4D_like Immunog 99.3 2.1E-11 4.6E-16 96.4 8.3 65 682-747 6-71 (87)
197 cd05765 Ig_3 Subgroup of the i 99.3 2.6E-11 5.6E-16 97.1 9.0 79 209-292 1-81 (81)
198 cd04977 Ig1_NCAM-1_like First 99.3 3.7E-11 8.1E-16 98.0 9.9 83 194-292 5-92 (92)
199 cd05856 Ig2_FGFRL1-like Second 99.2 2.1E-11 4.4E-16 98.1 7.7 75 208-292 8-82 (82)
200 cd04979 Ig_Semaphorin_C Immuno 99.2 3.3E-11 7.1E-16 98.1 8.7 78 682-760 6-88 (89)
201 cd05858 Ig3_FGFR-2 Third immun 99.2 2.6E-11 5.6E-16 98.9 7.7 82 209-292 1-89 (90)
202 cd05758 Ig5_KIRREL3-like Fifth 99.2 8.6E-11 1.9E-15 97.6 10.2 86 189-290 2-97 (98)
203 cd05882 Ig1_Necl-1 First (N-te 99.2 5.5E-11 1.2E-15 96.8 8.7 77 681-758 6-95 (95)
204 cd05771 IgC_Tapasin_R Tapasin- 99.2 5.8E-11 1.3E-15 106.0 9.6 77 725-801 2-80 (139)
205 cd07701 Ig1_Necl-3 First (N-te 99.2 6.8E-11 1.5E-15 96.8 9.0 77 681-758 6-95 (95)
206 cd05845 Ig2_L1-CAM_like Second 99.2 5.5E-11 1.2E-15 95.2 7.5 74 575-649 10-84 (95)
207 cd05873 Ig_Sema4D_like Immunog 99.2 9.9E-11 2.2E-15 92.6 8.0 70 195-280 2-71 (87)
208 cd05736 Ig2_Follistatin_like S 99.2 7E-11 1.5E-15 93.0 7.0 73 586-662 1-74 (76)
209 cd05753 Ig2_FcgammaR_like Seco 99.2 8.7E-11 1.9E-15 93.5 6.9 73 682-758 9-83 (83)
210 smart00408 IGc2 Immunoglobulin 99.2 1.7E-10 3.7E-15 87.3 8.3 63 686-748 1-63 (63)
211 cd04979 Ig_Semaphorin_C Immuno 99.1 2.6E-10 5.7E-15 92.8 9.6 85 196-293 3-87 (89)
212 cd05750 Ig_Pro_neuregulin Immu 99.1 9.8E-11 2.1E-15 92.1 6.7 64 212-283 1-69 (75)
213 cd05871 Ig_Semaphorin_classIII 99.1 2.3E-10 5E-15 92.6 8.8 78 682-760 6-90 (91)
214 cd05862 Ig1_VEGFR First immuno 99.1 3E-10 6.5E-15 91.1 8.6 74 687-760 1-86 (86)
215 cd05753 Ig2_FcgammaR_like Seco 99.1 2.2E-10 4.7E-15 91.2 7.5 74 199-292 9-83 (83)
216 cd05895 Ig_Pro_neuregulin-1 Im 99.1 3.2E-10 6.8E-15 89.2 8.1 65 212-283 1-70 (76)
217 cd05742 Ig1_VEGFR_like First i 99.1 3.6E-10 7.8E-15 90.8 7.9 81 209-292 1-83 (84)
218 cd05897 Ig2_IL1R2_like Second 99.1 3.1E-10 6.7E-15 91.3 6.7 77 682-758 5-93 (95)
219 cd05754 Ig3_Perlecan_like Thir 99.0 1.1E-09 2.5E-14 88.2 9.3 77 195-290 7-84 (85)
220 cd05757 Ig2_IL1R_like Second i 99.0 5.1E-10 1.1E-14 90.5 7.1 72 577-651 4-79 (92)
221 cd05885 Ig2_Necl-4 Second immu 99.0 1E-09 2.2E-14 84.7 8.1 70 689-758 1-80 (80)
222 cd05882 Ig1_Necl-1 First (N-te 99.0 1.2E-09 2.7E-14 88.8 9.0 85 197-291 5-94 (95)
223 TIGR00864 PCC polycystin catio 99.0 4.6E-05 1E-09 94.0 51.1 533 174-804 1501-2087(2740)
224 cd05861 Ig1_PDGFR-alphabeta Fr 99.0 1E-09 2.2E-14 87.7 8.3 78 209-293 1-83 (84)
225 cd05860 Ig4_SCFR Fourth immuno 99.0 1.6E-09 3.4E-14 86.8 8.9 78 682-759 13-100 (101)
226 cd05885 Ig2_Necl-4 Second immu 99.0 8.6E-10 1.9E-14 85.1 6.8 75 586-660 2-79 (80)
227 cd05717 Ig1_Necl-1-3_like Firs 99.0 2.1E-09 4.5E-14 88.8 9.7 75 682-758 7-95 (95)
228 PF05473 Herpes_UL45: UL45 pro 99.0 1.1E-09 2.4E-14 101.4 7.5 102 25-161 81-182 (200)
229 cd07690 Ig1_CD4 First immunogl 99.0 1.5E-09 3.2E-14 87.6 6.9 69 683-751 3-92 (94)
230 PF13895 Ig_2: Immunoglobulin 99.0 5.7E-09 1.2E-13 83.4 10.0 79 190-292 2-80 (80)
231 PF13895 Ig_2: Immunoglobulin 99.0 1.4E-09 3.1E-14 86.9 6.4 71 682-758 9-80 (80)
232 cd05898 Ig5_KIRREL3 Fifth immu 99.0 2.9E-09 6.3E-14 86.4 8.1 86 189-290 2-97 (98)
233 cd05729 Ig2_FGFR_like Second i 98.9 3.8E-09 8.2E-14 85.5 8.8 78 208-292 8-85 (85)
234 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 5.2E-09 1.1E-13 84.1 8.3 77 682-758 10-104 (104)
235 smart00408 IGc2 Immunoglobulin 98.9 3.9E-09 8.4E-14 79.7 7.4 63 208-281 1-63 (63)
236 cd05871 Ig_Semaphorin_classIII 98.9 8.1E-09 1.7E-13 83.6 9.4 79 208-293 10-89 (91)
237 PF00047 ig: Immunoglobulin do 98.9 3.2E-09 6.9E-14 80.4 6.5 57 687-743 1-64 (64)
238 cd05872 Ig_Sema4B_like Immunog 98.9 6.4E-09 1.4E-13 81.6 7.1 76 682-759 6-83 (85)
239 cd07701 Ig1_Necl-3 First (N-te 98.9 1.1E-08 2.5E-13 83.7 8.8 87 196-292 4-95 (95)
240 smart00409 IG Immunoglobulin. 98.9 1.6E-08 3.4E-13 82.0 9.7 77 682-758 4-85 (86)
241 smart00410 IG_like Immunoglobu 98.9 1.6E-08 3.4E-13 82.0 9.7 77 682-758 4-85 (86)
242 cd05862 Ig1_VEGFR First immuno 98.8 2.5E-08 5.4E-13 80.0 8.4 81 209-292 1-84 (86)
243 cd05897 Ig2_IL1R2_like Second 98.8 1.2E-08 2.5E-13 82.2 6.4 72 577-649 4-80 (95)
244 cd05759 Ig2_KIRREL3-like Secon 98.8 2.3E-08 5E-13 79.9 8.1 70 689-758 1-82 (82)
245 cd07690 Ig1_CD4 First immunogl 98.8 2.1E-08 4.6E-13 80.9 6.9 75 208-283 6-91 (94)
246 PF00047 ig: Immunoglobulin do 98.7 3.8E-08 8.2E-13 74.4 7.2 63 209-276 1-64 (64)
247 cd05896 Ig1_IL1RAPL-1_like Fir 98.7 7.2E-08 1.6E-12 77.6 8.4 70 208-281 14-94 (104)
248 cd05881 Ig1_Necl-2 First (N-te 98.7 1.7E-07 3.6E-12 75.7 10.1 65 681-745 6-83 (95)
249 cd05717 Ig1_Necl-1-3_like Firs 98.7 1.6E-07 3.4E-12 77.5 9.6 86 197-292 5-95 (95)
250 cd05751 Ig1_LILRB1_like First 98.6 1.5E-07 3.3E-12 76.6 8.4 76 682-758 11-90 (91)
251 PHA03376 BARF1; Provisional 98.6 3.8E-07 8.2E-12 79.9 11.0 108 682-798 21-161 (221)
252 cd05759 Ig2_KIRREL3-like Secon 98.6 1.4E-07 3.1E-12 75.3 7.8 78 212-291 2-81 (82)
253 cd05872 Ig_Sema4B_like Immunog 98.6 2.3E-07 5E-12 72.9 8.5 63 198-277 5-67 (85)
254 cd05714 Ig_CSPGs_LP Immunoglob 98.6 3.7E-07 8.1E-12 77.1 9.8 75 686-760 1-104 (106)
255 cd05877 Ig_LP_like Immunoglobu 98.5 6E-07 1.3E-11 75.8 9.9 75 686-760 1-104 (106)
256 cd05860 Ig4_SCFR Fourth immuno 98.5 5.8E-07 1.2E-11 72.2 9.0 84 199-292 13-99 (101)
257 cd05751 Ig1_LILRB1_like First 98.5 2.8E-07 6.1E-12 75.0 7.5 87 189-292 2-90 (91)
258 cd05774 Ig_CEACAM_D1 First imm 98.5 6.4E-07 1.4E-11 74.1 9.5 77 682-758 8-105 (105)
259 cd05900 Ig_Aggrecan Immunoglob 98.5 6.7E-07 1.4E-11 75.0 9.6 75 686-760 1-110 (112)
260 cd05774 Ig_CEACAM_D1 First imm 98.5 6.8E-07 1.5E-11 74.0 9.5 83 208-291 12-104 (105)
261 cd05883 Ig2_Necl-2 Second immu 98.5 4.9E-07 1.1E-11 70.1 8.0 79 212-294 2-81 (82)
262 cd05741 Ig_CEACAM_D1_like Firs 98.5 5.6E-07 1.2E-11 73.8 8.8 83 209-292 1-92 (92)
263 cd05713 Ig_MOG_like Immunoglob 98.5 7.9E-07 1.7E-11 74.2 9.6 72 687-758 1-99 (100)
264 cd05883 Ig2_Necl-2 Second immu 98.5 9.2E-07 2E-11 68.6 9.0 71 690-760 2-81 (82)
265 smart00409 IG Immunoglobulin. 98.5 1.2E-06 2.7E-11 70.7 9.4 72 209-292 9-85 (86)
266 smart00410 IG_like Immunoglobu 98.5 1.2E-06 2.7E-11 70.7 9.4 72 209-292 9-85 (86)
267 PHA03376 BARF1; Provisional 98.4 2.4E-06 5.3E-11 75.0 10.5 120 304-439 20-164 (221)
268 cd05741 Ig_CEACAM_D1_like Firs 98.4 1.4E-06 2.9E-11 71.6 8.5 72 687-758 1-92 (92)
269 PF13927 Ig_3: Immunoglobulin 98.4 3.8E-07 8.2E-12 71.6 4.6 58 687-745 15-75 (75)
270 cd05878 Ig_Aggrecan_like Immun 98.4 2.5E-06 5.5E-11 72.0 9.5 75 686-760 1-108 (110)
271 cd05718 Ig1_PVR_like First imm 98.4 2.6E-06 5.7E-11 70.8 9.2 72 688-759 1-98 (98)
272 cd05775 Ig_SLAM-CD84_like_N N- 98.4 1.4E-06 3.1E-11 71.7 7.4 85 207-292 2-96 (97)
273 cd04983 IgV_TCR_alpha_like Imm 98.3 1.3E-06 2.9E-11 74.3 7.2 67 682-748 8-94 (109)
274 cd05881 Ig1_Necl-2 First (N-te 98.3 5.6E-06 1.2E-10 66.9 9.8 75 197-279 5-84 (95)
275 cd05877 Ig_LP_like Immunoglobu 98.3 3.8E-06 8.3E-11 70.9 9.3 83 209-293 2-103 (106)
276 PF13927 Ig_3: Immunoglobulin 98.3 3.8E-07 8.3E-12 71.6 2.9 70 573-645 6-75 (75)
277 cd05879 Ig_P0 Immunoglobulin ( 98.3 4.1E-06 9E-11 70.9 8.5 77 682-758 8-116 (116)
278 KOG0613|consensus 98.3 2E-05 4.4E-10 89.8 16.2 278 422-748 212-517 (1205)
279 cd05880 Ig_EVA1 Immunoglobulin 98.3 3.6E-06 7.8E-11 71.8 7.9 76 682-757 8-114 (115)
280 cd05755 Ig2_ICAM-1_like Second 98.2 4.8E-06 1E-10 67.6 7.9 67 682-749 11-87 (100)
281 cd05899 IgV_TCR_beta Immunoglo 98.2 4.7E-06 1E-10 70.8 8.3 65 682-747 8-95 (110)
282 cd00099 IgV Immunoglobulin var 98.2 3.7E-06 8.1E-11 71.0 7.4 66 683-748 2-91 (105)
283 cd00098 IgC Immunoglobulin Con 98.2 3E-06 6.4E-11 70.0 6.7 65 685-749 11-87 (95)
284 cd05775 Ig_SLAM-CD84_like_N N- 98.2 3.5E-06 7.7E-11 69.4 7.0 74 685-758 2-96 (97)
285 cd05714 Ig_CSPGs_LP Immunoglob 98.2 8E-06 1.7E-10 68.9 9.1 84 209-294 2-104 (106)
286 cd05761 Ig2_Necl-1-4_like Seco 98.2 3E-06 6.5E-11 67.3 5.9 64 586-651 2-72 (82)
287 cd05711 Ig_FcalphaRI Immunoglo 98.2 9E-06 2E-10 66.4 8.7 62 682-744 10-75 (94)
288 cd05901 Ig_Versican Immunoglob 98.2 1.4E-05 3.1E-10 66.7 9.4 74 687-760 2-115 (117)
289 cd05886 Ig1_Nectin-1_like Firs 98.2 1.8E-05 4E-10 64.8 9.9 71 689-759 2-99 (99)
290 cd07705 Ig2_Necl-1 Second immu 98.2 5E-06 1.1E-10 65.9 6.4 65 586-651 2-73 (83)
291 cd05761 Ig2_Necl-1-4_like Seco 98.2 5.3E-06 1.2E-10 65.8 6.4 64 313-378 2-72 (82)
292 cd05900 Ig_Aggrecan Immunoglob 98.1 1.5E-05 3.3E-10 66.9 9.2 83 209-293 2-109 (112)
293 cd07705 Ig2_Necl-1 Second immu 98.1 8.1E-06 1.8E-10 64.7 7.0 68 313-381 2-76 (83)
294 cd05902 Ig_Neurocan Immunoglob 98.1 1.3E-05 2.9E-10 66.9 8.6 75 686-760 1-108 (110)
295 cd05715 Ig_P0-like Immunoglobu 98.1 1E-05 2.2E-10 69.4 8.1 77 682-758 8-116 (116)
296 cd05884 Ig2_Necl-3 Second immu 98.1 5.5E-06 1.2E-10 65.5 5.8 66 586-651 2-73 (83)
297 cd04983 IgV_TCR_alpha_like Imm 98.1 2.2E-05 4.8E-10 66.7 10.0 79 196-280 5-93 (109)
298 cd07694 Ig2_CD4 Second immunog 98.1 2.4E-05 5.2E-10 60.4 8.8 76 682-759 9-86 (88)
299 cd05755 Ig2_ICAM-1_like Second 98.1 5.9E-06 1.3E-10 67.1 5.8 80 571-650 4-88 (100)
300 cd00098 IgC Immunoglobulin Con 98.1 5.7E-06 1.2E-10 68.3 5.8 71 209-281 13-86 (95)
301 cd05718 Ig1_PVR_like First imm 98.1 1.7E-05 3.8E-10 65.8 8.7 81 210-292 1-97 (98)
302 PHA02987 Ig domain OX-2-like p 98.1 1.8E-05 3.8E-10 70.5 9.0 81 682-762 25-125 (189)
303 cd05879 Ig_P0 Immunoglobulin ( 98.1 9.7E-06 2.1E-10 68.6 7.1 75 578-652 8-108 (116)
304 KOG1480|consensus 98.1 2.5E-06 5.5E-11 90.7 4.1 186 190-388 25-220 (909)
305 cd05878 Ig_Aggrecan_like Immun 98.1 2.3E-05 5E-10 66.1 9.2 84 209-294 2-108 (110)
306 cd05888 Ig1_Nectin-4_like Frst 98.1 2.8E-05 6.1E-10 64.4 9.3 70 689-758 2-99 (100)
307 cd04980 IgV_L_kappa Immunoglob 98.1 3.1E-05 6.7E-10 65.3 9.5 81 193-279 4-93 (106)
308 cd05846 Ig1_MRC-OX-2_like Firs 98.0 2.9E-05 6.3E-10 64.1 9.1 72 687-758 1-96 (97)
309 cd05711 Ig_FcalphaRI Immunoglo 98.0 2E-05 4.4E-10 64.3 8.0 74 190-277 2-75 (94)
310 cd04980 IgV_L_kappa Immunoglob 98.0 1.3E-05 2.8E-10 67.5 7.1 65 682-746 10-93 (106)
311 cd05713 Ig_MOG_like Immunoglob 98.0 3.7E-05 8.1E-10 64.0 9.2 82 209-292 1-99 (100)
312 cd05884 Ig2_Necl-3 Second immu 98.0 1.6E-05 3.4E-10 62.9 6.4 67 313-379 2-74 (83)
313 cd05887 Ig1_Nectin-3_like Firs 98.0 6.6E-05 1.4E-09 60.8 9.9 72 688-759 1-96 (96)
314 cd05899 IgV_TCR_beta Immunoglo 98.0 4.5E-05 9.8E-10 64.8 9.2 79 195-280 4-95 (110)
315 cd04984 IgV_L_lambda Immunoglo 97.9 3.2E-05 7E-10 64.0 7.4 63 683-745 2-84 (98)
316 cd04982 IgV_TCR_gamma Immunogl 97.9 1.6E-05 3.4E-10 68.4 5.6 64 682-745 8-98 (116)
317 cd05846 Ig1_MRC-OX-2_like Firs 97.9 9E-05 1.9E-09 61.2 8.8 82 209-292 1-96 (97)
318 cd00096 Ig Immunoglobulin doma 97.8 7.6E-05 1.7E-09 57.4 7.8 59 690-748 1-67 (74)
319 cd05886 Ig1_Nectin-1_like Firs 97.8 0.00014 3.1E-09 59.5 9.5 80 211-292 2-98 (99)
320 cd05880 Ig_EVA1 Immunoglobulin 97.8 7.6E-05 1.7E-09 63.6 8.0 81 196-282 5-104 (115)
321 PF07686 V-set: Immunoglobulin 97.8 0.00012 2.7E-09 62.7 9.0 91 196-292 8-114 (114)
322 PF07686 V-set: Immunoglobulin 97.8 4.6E-05 9.9E-10 65.5 6.1 77 682-758 11-114 (114)
323 cd00099 IgV Immunoglobulin var 97.8 6.1E-05 1.3E-09 63.5 6.6 70 306-375 2-91 (105)
324 cd05716 Ig_pIgR Immunoglobulin 97.8 5.6E-05 1.2E-09 62.7 5.9 64 683-746 3-86 (98)
325 cd05902 Ig_Neurocan Immunoglob 97.7 0.00014 3E-09 60.8 8.1 83 209-293 2-107 (110)
326 cd05715 Ig_P0-like Immunoglobu 97.7 0.00021 4.6E-09 61.2 9.5 81 196-282 5-105 (116)
327 cd05887 Ig1_Nectin-3_like Firs 97.7 0.00024 5.1E-09 57.6 9.0 80 211-292 2-95 (96)
328 cd04982 IgV_TCR_gamma Immunogl 97.7 0.00011 2.3E-09 63.2 7.4 77 196-278 5-98 (116)
329 cd07692 Ig_CD3_epsilon Immunog 97.7 7E-05 1.5E-09 54.1 5.1 52 685-746 5-56 (65)
330 cd04984 IgV_L_lambda Immunoglo 97.7 0.00017 3.8E-09 59.6 8.3 72 207-279 4-85 (98)
331 PHA02987 Ig domain OX-2-like p 97.7 0.00019 4.1E-09 64.1 8.6 85 209-294 30-123 (189)
332 KOG0613|consensus 97.7 0.00087 1.9E-08 77.0 15.7 215 581-803 242-481 (1205)
333 PF08205 C2-set_2: CD80-like C 97.7 0.00012 2.6E-09 59.4 6.8 63 687-749 14-86 (89)
334 cd05901 Ig_Versican Immunoglob 97.7 0.00034 7.4E-09 58.5 9.4 83 209-293 2-114 (117)
335 cd05888 Ig1_Nectin-4_like Frst 97.7 0.00027 5.8E-09 58.6 8.8 80 211-292 2-99 (100)
336 smart00407 IGc1 Immunoglobulin 97.6 0.00023 5E-09 55.3 7.5 57 690-746 2-70 (75)
337 PHA03269 envelope glycoprotein 97.6 0.0082 1.8E-07 61.4 19.9 197 530-745 290-512 (566)
338 cd05772 IgC_SIRP Signal-regula 97.6 0.00042 9.2E-09 58.1 9.2 64 683-747 17-92 (111)
339 KOG1480|consensus 97.6 2.4E-05 5.2E-10 83.6 1.9 174 480-661 37-220 (909)
340 cd05889 Ig1_DNAM-1_like First 97.6 0.0006 1.3E-08 55.4 9.4 70 688-757 1-94 (96)
341 PF08205 C2-set_2: CD80-like C 97.6 0.00015 3.3E-09 58.8 6.1 70 210-281 15-85 (89)
342 smart00407 IGc1 Immunoglobulin 97.6 0.00021 4.4E-09 55.6 6.4 67 212-280 2-71 (75)
343 cd07706 IgV_TCR_delta Immunogl 97.6 0.00025 5.3E-09 60.9 7.2 64 682-745 9-93 (116)
344 cd07700 IgV_CD8_beta Immunoglo 97.5 0.00015 3.3E-09 61.1 5.6 63 683-745 2-93 (107)
345 PHA03269 envelope glycoprotein 97.5 0.02 4.3E-07 58.7 21.0 165 258-441 291-472 (566)
346 cd05889 Ig1_DNAM-1_like First 97.5 0.00029 6.4E-09 57.1 6.4 63 584-646 1-82 (96)
347 cd05720 Ig_CD8_alpha Immunoglo 97.5 0.00039 8.5E-09 58.1 7.3 63 683-745 2-90 (104)
348 PHA03273 envelope glycoprotein 97.5 0.0047 1E-07 63.0 15.9 195 530-745 199-421 (486)
349 cd07706 IgV_TCR_delta Immunogl 97.5 0.00092 2E-08 57.4 9.6 78 195-278 5-93 (116)
350 cd07694 Ig2_CD4 Second immunog 97.5 0.00098 2.1E-08 51.7 8.5 58 209-279 14-73 (88)
351 PHA03270 envelope glycoprotein 97.4 0.01 2.2E-07 60.0 17.3 197 528-744 181-400 (466)
352 cd07691 Ig_CD3_gamma_delta Imm 97.4 0.00038 8.2E-09 50.7 5.4 59 687-759 6-64 (69)
353 cd00096 Ig Immunoglobulin doma 97.4 0.00044 9.6E-09 52.9 6.0 66 212-280 1-66 (74)
354 cd05719 Ig2_PVR_like Second im 97.3 0.0014 3.1E-08 53.2 8.7 71 687-757 15-94 (95)
355 PHA03270 envelope glycoprotein 97.3 0.02 4.3E-07 58.0 18.1 168 256-442 182-363 (466)
356 cd07700 IgV_CD8_beta Immunoglo 97.3 0.0011 2.5E-08 55.7 8.4 71 207-278 4-93 (107)
357 cd05716 Ig_pIgR Immunoglobulin 97.3 0.00055 1.2E-08 56.7 6.1 68 306-373 3-86 (98)
358 cd07699 IgC_L Immunoglobulin C 97.3 0.00044 9.5E-09 57.1 5.4 69 210-280 18-89 (100)
359 cd07698 IgC_MHC_I_alpha3 Class 97.3 0.0006 1.3E-08 55.6 6.1 65 583-647 14-83 (93)
360 PHA03271 envelope glycoprotein 97.3 0.0093 2E-07 59.7 15.1 197 530-745 208-430 (490)
361 cd05719 Ig2_PVR_like Second im 97.3 0.0011 2.3E-08 53.9 7.0 62 585-649 17-84 (95)
362 cd07703 Ig2_Nectin-2_like Seco 97.2 0.0021 4.5E-08 52.1 8.4 67 210-281 16-83 (95)
363 cd05720 Ig_CD8_alpha Immunoglo 97.2 0.001 2.2E-08 55.5 6.9 71 207-278 4-90 (104)
364 cd07703 Ig2_Nectin-2_like Seco 97.2 0.0014 3E-08 53.1 7.3 63 688-750 16-85 (95)
365 cd07698 IgC_MHC_I_alpha3 Class 97.2 0.0011 2.3E-08 54.1 6.8 58 687-747 14-83 (93)
366 cd05772 IgC_SIRP Signal-regula 97.2 0.00066 1.4E-08 56.9 5.5 68 579-648 17-93 (111)
367 PHA02672 ORF110 EEV glycoprote 97.2 0.00031 6.8E-09 58.6 3.4 81 27-113 48-128 (166)
368 cd07696 IgC_CH3 CH3 domain (th 97.2 0.0012 2.5E-08 53.9 6.7 66 682-747 9-86 (96)
369 PHA03271 envelope glycoprotein 97.2 0.037 7.9E-07 55.7 18.0 161 625-803 208-388 (490)
370 cd05847 IgC_CH2_IgE CH2 domain 97.2 0.0012 2.7E-08 53.5 6.5 64 686-749 13-88 (94)
371 PHA03273 envelope glycoprotein 97.2 0.024 5.2E-07 58.0 16.6 161 258-437 200-376 (486)
372 cd07699 IgC_L Immunoglobulin C 97.1 0.00036 7.9E-09 57.6 3.2 69 580-648 14-90 (100)
373 cd05766 IgC_MHC_II_beta Class 97.1 0.0016 3.6E-08 52.9 6.4 68 581-648 12-84 (94)
374 cd05768 IgC_CH4 CH4 domain (fo 97.1 0.0011 2.3E-08 54.9 5.4 63 684-746 13-90 (102)
375 cd05712 Ig_Siglec_N Immunoglob 97.0 0.0019 4.2E-08 55.5 6.9 65 682-746 9-102 (119)
376 cd05770 IgC_beta2m Class I maj 97.0 0.0014 2.9E-08 52.9 5.5 67 581-647 13-83 (93)
377 cd05766 IgC_MHC_II_beta Class 97.0 0.0038 8.3E-08 50.7 8.2 60 685-747 12-83 (94)
378 cd05712 Ig_Siglec_N Immunoglob 97.0 0.004 8.6E-08 53.6 8.7 78 196-279 6-102 (119)
379 cd07692 Ig_CD3_epsilon Immunog 96.9 0.0018 3.8E-08 47.0 4.7 50 209-279 7-56 (65)
380 cd07696 IgC_CH3 CH3 domain (th 96.9 0.0025 5.5E-08 51.9 6.2 25 210-234 15-42 (96)
381 cd05767 IgC_MHC_II_alpha Class 96.9 0.0056 1.2E-07 49.6 8.0 66 210-280 16-84 (94)
382 cd04981 IgV_H Immunoglobulin ( 96.9 0.0035 7.6E-08 53.6 7.2 64 682-745 7-97 (117)
383 cd05847 IgC_CH2_IgE CH2 domain 96.9 0.0012 2.5E-08 53.6 4.0 67 582-648 13-87 (94)
384 cd07691 Ig_CD3_gamma_delta Imm 96.9 0.0032 7E-08 45.9 5.5 59 210-294 7-65 (69)
385 cd05770 IgC_beta2m Class I maj 96.8 0.0024 5.1E-08 51.5 5.4 65 310-374 15-83 (93)
386 PF07654 C1-set: Immunoglobuli 96.8 0.0051 1.1E-07 48.9 7.0 61 685-748 6-78 (83)
387 smart00406 IGv Immunoglobulin 96.7 0.0036 7.9E-08 49.5 5.9 55 689-743 1-81 (81)
388 PF07654 C1-set: Immunoglobuli 96.7 0.0035 7.5E-08 49.9 5.5 68 209-281 8-78 (83)
389 cd05767 IgC_MHC_II_alpha Class 96.7 0.0031 6.8E-08 51.0 5.0 66 582-647 14-84 (94)
390 cd07704 Ig2_Nectin-3-4_like Se 96.7 0.0075 1.6E-07 48.7 7.0 68 305-375 11-85 (97)
391 cd05769 IgC_TCR_beta T cell re 96.7 0.0052 1.1E-07 51.8 6.3 67 685-751 16-96 (115)
392 cd07704 Ig2_Nectin-3-4_like Se 96.7 0.0069 1.5E-07 48.9 6.7 68 578-648 11-85 (97)
393 cd04981 IgV_H Immunoglobulin ( 96.6 0.0041 8.9E-08 53.2 5.7 70 576-645 5-97 (117)
394 cd07689 Ig2_VCAM-1 Second immu 96.6 0.015 3.2E-07 46.6 7.9 66 682-748 10-87 (99)
395 cd05768 IgC_CH4 CH4 domain (fo 96.4 0.0068 1.5E-07 50.1 5.7 71 481-553 15-91 (102)
396 PHA02673 ORF109 EEV glycoprote 96.4 0.0027 5.7E-08 54.4 3.2 51 27-81 75-125 (161)
397 smart00406 IGv Immunoglobulin 96.4 0.0085 1.9E-07 47.3 5.9 64 212-276 2-81 (81)
398 cd07697 IgC_TCR_gamma T cell r 96.3 0.021 4.5E-07 46.4 7.5 60 685-746 14-84 (96)
399 cd04986 IgC_CH2 CH2 domain (se 96.3 0.011 2.3E-07 48.1 5.7 63 684-747 16-89 (99)
400 PHA02914 Immunoglobulin-like d 96.2 1.5 3.2E-05 44.4 21.1 116 682-803 274-422 (500)
401 cd04985 IgC_CH1 CH1 domain (fi 96.2 0.012 2.7E-07 47.8 6.0 61 686-747 15-87 (95)
402 cd07697 IgC_TCR_gamma T cell r 96.2 0.019 4E-07 46.7 7.0 65 210-279 17-84 (96)
403 cd05769 IgC_TCR_beta T cell re 96.2 0.01 2.2E-07 50.0 5.5 71 210-282 19-94 (115)
404 PF08204 V-set_CD47: CD47 immu 96.1 0.0039 8.5E-08 52.8 2.6 75 684-759 24-120 (130)
405 cd04986 IgC_CH2 CH2 domain (se 96.1 0.013 2.9E-07 47.6 5.4 67 580-648 16-90 (99)
406 PHA02633 hypothetical protein; 96.1 0.016 3.5E-07 41.2 5.0 41 723-763 17-57 (63)
407 cd07689 Ig2_VCAM-1 Second immu 96.0 0.02 4.4E-07 45.8 5.8 68 306-375 11-87 (99)
408 cd04985 IgC_CH1 CH1 domain (fi 95.8 0.012 2.7E-07 47.8 4.3 65 582-647 15-87 (95)
409 PHA03093 EEV glycoprotein; Pro 95.7 0.013 2.7E-07 51.8 4.1 51 26-81 98-148 (185)
410 KOG4597|consensus 95.7 0.021 4.5E-07 58.3 6.0 82 678-759 202-292 (560)
411 PHA02633 hypothetical protein; 95.5 0.046 9.9E-07 39.0 5.4 38 254-293 16-53 (63)
412 PF07354 Sp38: Zona-pellucida- 95.2 0.034 7.3E-07 52.7 5.3 50 597-647 11-60 (271)
413 PHA02982 hypothetical protein; 95.2 0.14 3.1E-06 46.4 8.8 114 682-801 34-173 (251)
414 PHA03042 CD47-like protein; Pr 95.1 0.077 1.7E-06 50.5 7.2 72 685-759 29-105 (286)
415 PF07354 Sp38: Zona-pellucida- 94.9 0.036 7.7E-07 52.6 4.7 50 324-374 11-60 (271)
416 PHA02914 Immunoglobulin-like d 94.8 3.6 7.9E-05 41.7 17.9 121 480-608 277-419 (500)
417 PF11465 Receptor_2B4: Natural 94.3 0.18 3.9E-06 40.7 6.5 71 689-759 29-107 (108)
418 cd05721 IgV_CTLA-4 Immunoglobu 94.3 0.13 2.8E-06 42.8 5.9 62 682-743 8-93 (115)
419 PF05966 Chordopox_A33R: Chord 94.2 0.022 4.8E-07 51.0 1.4 50 27-81 103-152 (190)
420 PF08204 V-set_CD47: CD47 immu 94.2 0.075 1.6E-06 45.2 4.4 80 210-292 28-119 (130)
421 cd05721 IgV_CTLA-4 Immunoglobu 94.1 0.3 6.6E-06 40.6 7.7 66 210-276 14-93 (115)
422 PHA02982 hypothetical protein; 94.1 0.27 5.8E-06 44.7 7.8 118 579-712 35-173 (251)
423 PHA03282 envelope glycoprotein 93.3 2.6 5.6E-05 43.7 14.2 48 521-569 116-164 (540)
424 PF05790 C2-set: Immunoglobuli 92.6 0.6 1.3E-05 36.3 6.8 52 701-758 26-78 (80)
425 KOG4597|consensus 91.9 0.34 7.3E-06 49.9 6.0 92 190-292 197-291 (560)
426 PHA03042 CD47-like protein; Pr 91.5 0.64 1.4E-05 44.5 6.9 67 210-291 32-103 (286)
427 cd03519 Link_domain_HAPLN_modu 91.2 0.14 3E-06 40.1 2.0 23 48-70 10-32 (91)
428 PF02124 Marek_A: Marek's dise 91.1 3.5 7.6E-05 38.5 11.2 130 225-371 8-158 (211)
429 PF11465 Receptor_2B4: Natural 90.7 0.73 1.6E-05 37.3 5.5 44 248-292 61-106 (108)
430 PF05790 C2-set: Immunoglobuli 90.7 1.9 4.1E-05 33.6 7.7 33 258-292 45-78 (80)
431 PF02480 Herpes_gE: Alphaherpe 90.2 0.5 1.1E-05 50.4 5.7 86 350-437 88-191 (439)
432 KOG1026|consensus 89.4 0.93 2E-05 50.9 7.1 148 209-380 207-357 (774)
433 KOG1026|consensus 88.4 0.62 1.4E-05 52.2 4.9 115 682-805 202-316 (774)
434 PF06832 BiPBP_C: Penicillin-B 88.3 4.4 9.5E-05 32.5 8.6 54 212-284 32-85 (89)
435 PHA03286 envelope glycoprotein 88.1 24 0.00051 36.9 15.2 38 528-566 126-163 (492)
436 PHA03283 envelope glycoprotein 88.1 6.5 0.00014 41.7 11.6 86 350-438 133-236 (542)
437 PF08391 Ly49: Ly49-like prote 88.0 0.21 4.5E-06 41.7 0.8 22 22-43 98-119 (119)
438 cd03520 Link_domain_CSPGs_modu 86.9 0.42 9.1E-06 38.0 1.8 23 48-70 10-32 (96)
439 PHA03281 envelope glycoprotein 86.8 16 0.00035 39.0 13.4 87 349-438 296-397 (642)
440 cd01102 Link_Domain The link d 84.8 0.45 9.8E-06 37.7 1.1 23 48-70 13-35 (92)
441 smart00445 LINK Link (Hyaluron 84.0 0.52 1.1E-05 37.6 1.1 23 48-70 14-36 (94)
442 PF06832 BiPBP_C: Penicillin-B 83.6 12 0.00026 29.9 9.0 56 689-752 31-86 (89)
443 PHA02865 MHC-like TNF binding 83.1 2.5 5.4E-05 42.7 5.7 21 689-709 216-238 (338)
444 cd05890 Ig2_Nectin-1_like Seco 83.0 10 0.00022 30.2 7.8 76 210-291 21-97 (98)
445 PF02010 REJ: REJ domain; Int 82.8 1.9 4.2E-05 47.1 5.5 294 485-797 3-340 (440)
446 PF06328 Lep_receptor_Ig: Ig-l 82.5 5.4 0.00012 31.8 6.3 62 682-743 13-81 (89)
447 cd03518 Link_domain_HAPLN_modu 81.4 0.71 1.5E-05 36.7 1.0 23 48-70 13-35 (95)
448 PHA03052 Hypothetical protein; 81.4 3.7 8E-05 30.0 4.4 38 769-806 5-45 (69)
449 PHA03283 envelope glycoprotein 81.3 9.3 0.0002 40.7 9.2 75 723-797 133-233 (542)
450 KOG0200|consensus 81.1 16 0.00034 41.8 12.1 123 622-759 11-152 (609)
451 cd03515 Link_domain_TSG_6_like 80.7 0.7 1.5E-05 36.6 0.7 23 48-70 13-35 (93)
452 cd05890 Ig2_Nectin-1_like Seco 79.6 5.8 0.00012 31.6 5.4 57 587-646 24-86 (98)
453 PF02480 Herpes_gE: Alphaherpe 79.6 9.3 0.0002 41.0 8.9 41 526-567 86-126 (439)
454 cd03521 Link_domain_KIAA0527_l 79.4 1.1 2.4E-05 34.8 1.4 23 48-70 13-35 (95)
455 PHA02865 MHC-like TNF binding 78.3 4.8 0.0001 40.7 5.9 22 312-333 216-238 (338)
456 cd03517 Link_domain_CSPGs_modu 77.1 1 2.3E-05 35.9 0.7 24 48-71 13-36 (95)
457 PF00193 Xlink: Extracellular 76.8 1.1 2.3E-05 36.0 0.7 23 48-70 13-35 (92)
458 PHA03189 UL14 tegument protein 76.4 16 0.00036 35.8 8.5 77 682-758 62-168 (348)
459 PF02124 Marek_A: Marek's dise 74.7 42 0.0009 31.7 10.5 93 702-802 7-117 (211)
460 PHA03282 envelope glycoprotein 74.3 19 0.0004 37.8 8.8 38 722-759 122-161 (540)
461 PHA03052 Hypothetical protein; 73.4 17 0.00038 26.7 5.9 34 197-235 5-41 (69)
462 KOG4297|consensus 72.8 11 0.00023 33.4 6.7 94 37-136 98-192 (207)
463 PHA03286 envelope glycoprotein 68.4 35 0.00075 35.8 9.2 76 723-798 126-226 (492)
464 cd03516 Link_domain_CD44_like 66.1 2.9 6.3E-05 36.2 1.0 23 48-70 18-40 (144)
465 PF06328 Lep_receptor_Ig: Ig-l 65.6 13 0.00028 29.7 4.6 43 768-810 10-57 (89)
466 smart00089 PKD Repeats in poly 62.0 70 0.0015 24.5 8.3 64 685-758 12-78 (79)
467 PHA03240 envelope glycoprotein 61.3 11 0.00024 34.6 3.8 78 682-759 33-144 (258)
468 PF03921 ICAM_N: Intercellular 61.1 66 0.0014 25.8 7.6 77 682-763 13-90 (91)
469 PRK14081 triple tyrosine motif 60.7 3E+02 0.0065 31.4 43.5 198 578-795 396-611 (667)
470 PF11049 KSHV_K1: Glycoprotein 60.6 20 0.00043 26.1 4.1 60 691-764 2-61 (71)
471 PF06387 Calcyon: D1 dopamine 55.0 6.1 0.00013 35.0 1.1 14 28-41 112-125 (186)
472 KOG0200|consensus 54.8 90 0.002 35.7 10.7 108 527-645 11-138 (609)
473 PHA03281 envelope glycoprotein 54.2 77 0.0017 34.2 8.9 75 723-797 297-394 (642)
474 PF00801 PKD: PKD domain; Int 53.5 89 0.0019 23.2 7.3 60 682-751 6-68 (69)
475 PHA03189 UL14 tegument protein 49.7 2.8E+02 0.0061 27.7 11.6 22 408-429 61-82 (348)
476 PHA03240 envelope glycoprotein 43.2 49 0.0011 30.7 4.9 72 576-648 31-129 (258)
477 PHA03112 IL-18 binding protein 42.3 45 0.00096 29.0 4.3 64 685-748 36-120 (141)
478 PF07979 Intimin_C: Intimin C- 39.7 15 0.00033 29.6 1.1 31 48-80 12-42 (101)
479 PF02440 Adeno_E3_CR1: Adenovi 38.1 96 0.0021 22.8 4.8 20 581-605 3-22 (63)
480 COG4953 PbpC Membrane carboxyp 37.2 1.6E+02 0.0034 33.1 8.4 77 190-286 651-727 (733)
481 PF11141 DUF2914: Protein of u 35.5 1.6E+02 0.0036 21.9 5.9 57 702-758 7-65 (66)
482 PRK14081 triple tyrosine motif 35.5 7.3E+02 0.016 28.5 26.6 116 684-804 302-431 (667)
483 PHA02935 Hypothetical protein; 33.5 61 0.0013 29.5 4.0 83 703-787 68-166 (349)
484 PF02010 REJ: REJ domain; Int 32.2 69 0.0015 34.9 5.2 209 212-435 3-233 (440)
485 PF01688 Herpes_gI: Alphaherpe 30.5 99 0.0021 27.8 4.7 35 724-758 124-158 (161)
486 cd00146 PKD polycystic kidney 23.7 3.4E+02 0.0073 20.7 6.8 63 687-757 14-80 (81)
487 PF07936 Defensin_4: Potassium 22.8 30 0.00065 21.5 0.1 16 27-43 17-32 (34)
488 PF12988 DUF3872: Domain of un 22.5 5.2E+02 0.011 22.5 8.3 80 657-752 33-128 (137)
489 PF12661 hEGF: Human growth fa 22.1 21 0.00046 16.9 -0.5 6 29-34 4-9 (13)
490 TIGR01492 CPW_WPC Plasmodium f 21.6 41 0.00089 24.7 0.7 17 26-42 7-25 (62)
No 1
>KOG3513|consensus
Probab=100.00 E-value=4.7e-69 Score=582.98 Aligned_cols=544 Identities=31% Similarity=0.566 Sum_probs=452.8
Q ss_pred CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCC
Q psy14896 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269 (813)
Q Consensus 190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 269 (813)
|+|+.+|.+..+..... -..+.|.|++.|+|.|+++|+|||.++ ++....++.+..|+|.|.+.....|.
T Consensus 40 P~f~~q~~~~~~~~~~~--~~~v~l~C~A~G~P~Psy~W~kng~~~--------d~~~~~~~~~~~G~lvI~~p~~~~d~ 109 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSD--DSSVTLNCEANGNPEPSYRWTKNGTEF--------DPTEYPRVSVLGGTLVITNPDAALDQ 109 (1051)
T ss_pred ceeeecCCceEEecccC--CccEEEEEEecCCCCceeEEEECCeec--------ccccccceeeecCceEecCCcchhhc
Confidence 89999998877766643 124999999999999999999999754 55666777777999999987558999
Q ss_pred eeEEEEeecCceeeEeeeeEEeeeeeccccc-CCCCceeecCCCeEEEecCCCCCCcceEEEeecccccc-ccCCccEEE
Q psy14896 270 GSYHCKASNKFGSIISESVQLAFGFIGEFNL-KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF-VEEDKRVFV 347 (813)
Q Consensus 270 G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~-~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~-~~~~~~~~~ 347 (813)
|.|.|.|+|..|+++|.++.|+..+.+.|.. ...+..+.+|+++.|.|.++.+.|.+.+.|..++.+.. ..+..|+.+
T Consensus 110 G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~ 189 (1051)
T KOG3513|consen 110 GIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFS 189 (1051)
T ss_pred ceeEEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEe
Confidence 9999999999999999999999999999884 47888999999999999999999999999998877643 334479999
Q ss_pred ccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecC
Q psy14896 348 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP 427 (813)
Q Consensus 348 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p 427 (813)
..+|+|.|.+|..+|.+.|.|.|.+........+..+.|.+..........+.-..+.........|+.+.|+|.+.|+|
T Consensus 190 ~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P 269 (1051)
T KOG3513|consen 190 QENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNP 269 (1051)
T ss_pred cccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCC
Confidence 99999999999999999999999998877788888899998443222222111111222246788999999999999999
Q ss_pred CCeeeEeecCC-cCCCCceeccccceEEEcccc--cccceEEeCCCceEec-------------------ccccccccCe
Q psy14896 428 VPSYNWTRRGS-PLPRNAYFENFNRILTIPNVK--MRGPYFIKQPTDVVFD-------------------LSKRSILNDI 485 (813)
Q Consensus 428 ~p~i~W~~~~~-~l~~~~~~~~~~~~l~i~~~~--~~g~y~~~~~~~~~~~-------------------~~~~~~g~~~ 485 (813)
.|.|.|+|.++ +++....+...+.+|.|.++. ++|.|.|.+.|..... ......|+++
T Consensus 270 ~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v 349 (1051)
T KOG3513|consen 270 TPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNV 349 (1051)
T ss_pred CCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCe
Confidence 99999999888 777788888999999999986 4899999877653211 1123678999
Q ss_pred EEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEE
Q psy14896 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 565 (813)
Q Consensus 486 ~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v 565 (813)
+|.|.+.|.|.|.|+|+|||.++. ......++.+.++.|.|.++ +..|+|+|.|.|+|..|...+. +.|.|
T Consensus 350 ~~eC~a~g~P~p~v~WlkNg~pl~-------~~~r~~~~~i~~g~L~is~v-~~~dsg~YQC~A~Nk~G~i~an-A~L~V 420 (1051)
T KOG3513|consen 350 TLECKASGKPNPTVKWLKNGEPLE-------PAERDPRYKIDDGTLIISNV-QESDSGVYQCIAENKYGTIYAN-AELKV 420 (1051)
T ss_pred EEEEEecCCCCCceEEeeCCeecC-------ccCCCcceEEeCCEEEEEec-ccccCeEEEeeeecccceEeee-eEEEE
Confidence 999999999999999999998763 12334568899999999997 8999999999999999998665 78888
Q ss_pred eec-ccccccCCCc--eeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEE
Q psy14896 566 GFI-GEFNLKRAPE--IGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCN 642 (813)
Q Consensus 566 ~~~-p~~~~~~~~~--~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 642 (813)
... |.|...+... .+..|..+.|.|.+ .+.|.+.++|.|++. .+..+.|+.+..+|+|.|.+++.+|+|.|+|.
T Consensus 421 ~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~-~asP~p~~~W~k~~~--~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~ 497 (1051)
T KOG3513|consen 421 LASAPVFPLNPVERKVMAVVGGTVTIDCKP-FASPKPKVSWLKGGE--KLLQSGRIRILEDGTLEISNVTRSDAGKYTCV 497 (1051)
T ss_pred EccCCCCCCCccceEEEEEeCCeEEEeecc-CCCCcceEEEEcCCc--ccccCceEEECCCCcEEecccCcccCcEEEEE
Confidence 655 6666554444 56789999999999 899999999999997 36678899999999999999999999999999
Q ss_pred EEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeCCcccCCC---c
Q psy14896 643 VQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRN---A 717 (813)
Q Consensus 643 a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~---~ 717 (813)
|+|..|.+... ..|.|..++++.. . +....+..|++++|+|++.-+|. ..|.|.+||..+... .
T Consensus 498 A~N~~G~a~~~---~~L~Vkd~tri~~--~------P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~ 566 (1051)
T KOG3513|consen 498 AENKLGKAEST---GNLIVKDATRITL--A------PSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGD 566 (1051)
T ss_pred EEcccCccceE---EEEEEecCceEEe--c------cchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCC
Confidence 99999987654 7899999888765 2 23367899999999999987775 589999999977533 3
Q ss_pred eeeecc----eEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccc
Q psy14896 718 YFENFN----RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI 766 (813)
Q Consensus 718 ~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~ 766 (813)
++...+ +.|+|.+++.+|+|.|+|+|.-.+-+.++.+.|.|.+||..+.
T Consensus 567 ~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~ 619 (1051)
T KOG3513|consen 567 HFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPP 619 (1051)
T ss_pred ceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCC
Confidence 333222 3599999999999999999999888999999999999987654
No 2
>KOG3513|consensus
Probab=100.00 E-value=2.2e-55 Score=476.86 Aligned_cols=464 Identities=24% Similarity=0.365 Sum_probs=373.0
Q ss_pred CeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeee-ecCCeeeEEEEeeeccccCCCCCceeeEEcc
Q psy14896 312 GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE-QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP 390 (813)
Q Consensus 312 ~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~ 390 (813)
.++|.|. +.|+|.|+++|+|||..+......++.+. .|+|.|.+.. ..|.|.|+|.|+|..|..- +..+.|....
T Consensus 59 ~v~l~C~-A~G~P~Psy~W~kng~~~d~~~~~~~~~~-~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~--S~~~~l~~~~ 134 (1051)
T KOG3513|consen 59 SVTLNCE-ANGNPEPSYRWTKNGTEFDPTEYPRVSVL-GGTLVITNPDAALDQGIYQCFASNKLGTAV--SREARLQFGF 134 (1051)
T ss_pred cEEEEEE-ecCCCCceeEEEECCeecccccccceeee-cCceEecCCcchhhcceeEEEeecccceee--ccceeecccc
Confidence 3789999 58999999999999999877777777665 8899999988 8899999999999998543 3345555544
Q ss_pred CCcccccccCCCCCCCCCcCCCCCCcEEEEEEEe-ecCCCeeeEeecCCcCCC----CceeccccceEEEccccc--ccc
Q psy14896 391 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPR----NAYFENFNRILTIPNVKM--RGP 463 (813)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~~~~l~~----~~~~~~~~~~l~i~~~~~--~g~ 463 (813)
-+.+.... ..+..+.+|+.+.|.|... +.|.+.+.|..+..+-.. ...+....+.|-+.+++. .+.
T Consensus 135 i~~F~~e~-------~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~ 207 (1051)
T KOG3513|consen 135 IPKFKKEE-------RSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGN 207 (1051)
T ss_pred cccCcccc-------CCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCc
Confidence 44333222 3345799999999999984 678899999987654321 233445567788877764 689
Q ss_pred eEEeCCCc------------eEec------------------ccccccccCeEEEEEeeccCCCcEEEeeccccccceec
Q psy14896 464 YFIKQPTD------------VVFD------------------LSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 513 (813)
Q Consensus 464 y~~~~~~~------------~~~~------------------~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~ 513 (813)
|.|.+... +.+. ......|+.+.|+|-+.|+|.|+|.|.|.|..
T Consensus 208 Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~------ 281 (1051)
T KOG3513|consen 208 YICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGK------ 281 (1051)
T ss_pred eEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCC------
Confidence 99965321 1110 11235689999999999999999999998842
Q ss_pred cccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCC
Q psy14896 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPP 593 (813)
Q Consensus 514 ~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~ 593 (813)
......++.-.+..|.|.++ +.+|+|.|+|.|+|..|.. +....+.|..+|.+........+..|++++|.|.+
T Consensus 282 ---~~~~r~~~~~~~~vL~I~nv-~~~D~G~Y~C~AeN~~G~~-~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a- 355 (1051)
T KOG3513|consen 282 ---PPPRRATYSNYGKVLKIPNV-QYEDAGEYECIAENSRGSA-THSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKA- 355 (1051)
T ss_pred ---CCCcceeeeccccEEEeccc-CcCCCeEEEEEEecccccc-eeeEEEEEecCchhhcccceeEecCCCCeEEEEEe-
Confidence 11222334445679999997 9999999999999999955 66689999999999998899999999999999999
Q ss_pred CCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccC
Q psy14896 594 TNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFP 673 (813)
Q Consensus 594 ~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p 673 (813)
.|.|.|+|+|+|||.++...+........+|+|+|.+++..|+|.|.|.|+|..|..... +.|.|..........
T Consensus 356 ~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~an---A~L~V~a~~P~f~~~-- 430 (1051)
T KOG3513|consen 356 SGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYAN---AELKVLASAPVFPLN-- 430 (1051)
T ss_pred cCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeee---eEEEEEccCCCCCCC--
Confidence 799999999999999876444433344578999999999999999999999999886554 778887763222110
Q ss_pred CCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee-cceEEEECCCCCCCCEEEEEEEEcCCCceEE
Q psy14896 674 NNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN-FNRILTIPNVKVEDQGEYICRASNDRSALES 752 (813)
Q Consensus 674 ~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 752 (813)
+......+..|.++.|.|...+.|.|.++|.|+++.+..+.++.. .+++|.|.+++.+|+|.|+|.|+|.+|.++.
T Consensus 431 ---p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~ 507 (1051)
T KOG3513|consen 431 ---PVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAES 507 (1051)
T ss_pred ---ccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccce
Confidence 111224678999999999999999999999999997777776654 6899999999999999999999999999999
Q ss_pred EEEEEEEcCCcccccCCceeecCCCeEEEEEEEcccC--CceEEEEECCEeccccc
Q psy14896 753 SVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVP--DVTYSWFRNGELGHQMT 806 (813)
Q Consensus 753 ~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p--~~~v~W~k~g~~l~~~~ 806 (813)
++.|.|+.+++|...|....+..|+.++|.|++.-+| ...|.|.+||++|....
T Consensus 508 ~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~ 563 (1051)
T KOG3513|consen 508 TGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNP 563 (1051)
T ss_pred EEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccC
Confidence 9999999999999999999999999999999998776 55799999999886554
No 3
>KOG4222|consensus
Probab=100.00 E-value=3.5e-49 Score=422.07 Aligned_cols=466 Identities=23% Similarity=0.367 Sum_probs=378.9
Q ss_pred CCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcc--
Q psy14896 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQ-- 265 (813)
Q Consensus 188 ~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-- 265 (813)
.+|+|+..|.+..+..+ +.++|.|.++|.|+|+|+|||+|+... -....+.|+.+.+|+|++...++
T Consensus 30 ~~p~iiehp~d~vvs~~-----~patlnc~asG~ppPti~w~k~G~~~~------~~e~~shR~~lp~gsLf~l~~ahg~ 98 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKG-----EPATLNCKASGDPPPTIEWYKDGENVF------KGEPGSHRFLLPDGSLFLLRLAHGK 98 (1281)
T ss_pred CCCceEecchhhhccCC-----CCceeecCCCCCCCCceecccCCcccC------CCCCCCcceecCCccEEEEecccCC
Confidence 57999999999998777 669999999999999999999997542 22466778889999987774322
Q ss_pred --ccCCeeEEEEeecCceeeEeeeeEEeeeeec-ccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCC
Q psy14896 266 --VEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEED 342 (813)
Q Consensus 266 --~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~ 342 (813)
..|.|.|+|+|+|..|.+.|..+.|.+.... .|.+.+.......|+.++|.|..+.|.|.+.++|.|||+++.+...
T Consensus 99 ~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~ 178 (1281)
T KOG4222|consen 99 KAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDV 178 (1281)
T ss_pred cccCCCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccc
Confidence 3499999999999999999999999987765 4888888888889999999999999999999999999999877788
Q ss_pred ccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEE
Q psy14896 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV 422 (813)
Q Consensus 343 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~ 422 (813)
.++.+...|.|.|.++...|+|.|.|+++|..|. ..+..+.|+|+++|.+... .....+..|..+.+.|.
T Consensus 179 ~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~--ReS~~A~lsv~e~P~f~~r--------p~~~~v~~g~~~~f~c~ 248 (1281)
T KOG4222|consen 179 PIIALISGGNLLISNVRKSDEGTYACVATNMVGE--RESIPARLSVQEKPWFWKR--------PKDLAVLVGAAAEFDCR 248 (1281)
T ss_pred eeEEEecCCcEEEeccccCCCceeeeeecccccc--cccccceeeeccCCccccc--------cccceeecccccccccc
Confidence 8888889999999999999999999999999985 4456789999888765322 23356777888888888
Q ss_pred EeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEe
Q psy14896 423 AFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF 502 (813)
Q Consensus 423 ~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~ 502 (813)
+.|.|.|.+.|.+++..++..
T Consensus 249 v~GdP~P~Vrwkk~~~~~P~~----------------------------------------------------------- 269 (1281)
T KOG4222|consen 249 VGGDPQPTVRWKKDDPSLPRS----------------------------------------------------------- 269 (1281)
T ss_pred cCCCCCCceeeeccCCCCCcc-----------------------------------------------------------
Confidence 888888888888876665432
Q ss_pred eccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceecc
Q psy14896 503 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ 582 (813)
Q Consensus 503 k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~ 582 (813)
...+...+.+|.|.+. ...|.|.|.|.|+|..|... ....++|..+|.|...+.+..+..
T Consensus 270 ------------------ry~i~~d~qtl~i~r~-tp~deg~y~C~a~n~vG~l~-asa~ltV~apP~f~kkp~dq~v~l 329 (1281)
T KOG4222|consen 270 ------------------RYSILDDTQTLRIDRV-TPTDEGTYVCPAENLVGGLE-ASATLTVQAPPSFGKKPRDQKVAL 329 (1281)
T ss_pred ------------------ceeeeecccccccccc-CCCcccceeeeccccccccc-cccceEEecCcccccccCcccccc
Confidence 1112223467888885 88999999999999999974 448999999999999999999999
Q ss_pred CCCceEEeCCCCCCCccEEEEccCCCCCc------ccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCce
Q psy14896 583 NWGKAMFCDPPTNYPGVNYYWARDYFPNF------VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 656 (813)
Q Consensus 583 g~~~~l~C~~~~~~p~~~v~W~k~~~~~~------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~ 656 (813)
|..++|.|++ .|+|.+.+.|.|.|.... ...+.+..+...|+|+|.++...|.|.|.|...+.+|........
T Consensus 330 g~~vt~pc~~-~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~ 408 (1281)
T KOG4222|consen 330 GGTVTFPCET-LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYL 408 (1281)
T ss_pred CceEEeeeec-CCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeE
Confidence 9999999999 799999999999876432 234567788888999999999999999999999988876544333
Q ss_pred eeEEEccC--CCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc--eeeecceEEEECCCC
Q psy14896 657 FPLKVFPH--SNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVK 732 (813)
Q Consensus 657 ~~l~v~~~--p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~--~~~~~~~~L~i~~v~ 732 (813)
..+.+... |.... ......++..+|..+.|.|.+.|.|.|.+.|+++|-.+...+ ......++|+|.+..
T Consensus 409 ~qt~~~~~~rPpp~i------~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~ 482 (1281)
T KOG4222|consen 409 EQTDVLTDSRPPPII------EQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLK 482 (1281)
T ss_pred EEEeeeccCCCCcee------eecccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeee
Confidence 33333221 21111 113334677789999999999999999999999987664333 222335789999999
Q ss_pred CCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896 733 VEDQGEYICRASNDRSALESSVTISIQA 760 (813)
Q Consensus 733 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 760 (813)
..|.|.|+|.|.+..|+..-++.|.|..
T Consensus 483 ~~DtG~YTc~as~~~ges~wSatl~v~~ 510 (1281)
T KOG4222|consen 483 GPDTGRYTCIASDESGESTWSATLTVEK 510 (1281)
T ss_pred cCCCcceeeeccCcccccccceeeEhhh
Confidence 9999999999999999999999999974
No 4
>KOG4221|consensus
Probab=100.00 E-value=3.3e-43 Score=378.64 Aligned_cols=502 Identities=21% Similarity=0.269 Sum_probs=360.5
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeecc--CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCc--
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGG--YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR-- 264 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g--~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-- 264 (813)
+-.|..+|.+. .+| ..+.|.|.... .+.+.|.|.|||..+.+. ..+.+..+.+|+|.|.+..
T Consensus 41 ~~~f~~ep~d~--~~~-----~svlLecs~~~~~~~~~~i~wkkDg~~l~e~-------~d~~~~~LsNgSl~i~~v~~~ 106 (1381)
T KOG4221|consen 41 PLQFLLEPSDA--MEG-----SSVLLECSAYAAGGTSVKIEWKKDGSQLNEV-------YDDRRQLLSNGSLYISSVLAS 106 (1381)
T ss_pred cceEEeccccc--ccc-----cceEEeccccccCCCCeeEEEccCchhhhhh-------hhhHHhhccCCceeEeeeccc
Confidence 34577788765 445 66999999843 357899999999866431 2245556789999998752
Q ss_pred --cccCCeeEEEEeecC-ceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccC
Q psy14896 265 --QVEDRGSYHCKASNK-FGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE 341 (813)
Q Consensus 265 --~~~d~G~Y~C~a~n~-~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~ 341 (813)
..-|+|.|+|.|+-. .|+..|..+.|.+...++|.....+..+..|+++.|.|.+ .+.|.+.+.|.||+.++ ..
T Consensus 107 kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~v-n~e~~p~i~w~kn~~pl--~~ 183 (1381)
T KOG4221|consen 107 KHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEV-NAEPVPTIMWLKNDQPL--PL 183 (1381)
T ss_pred ccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEE-cCccCceeEEecccccc--cC
Confidence 237899999999965 8888999999999999999999999999999999999997 55899999999999985 44
Q ss_pred CccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEE
Q psy14896 342 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421 (813)
Q Consensus 342 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C 421 (813)
+.|+.+..+|.|.|.++++.|.|.|+|.|+++.. ...+..+.|+|...+....- -.++....+..+.+|+.+.|+|
T Consensus 184 ~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~--~r~S~~a~ltv~s~~~~~~~--~~fl~~p~~~~v~~g~~v~leC 259 (1381)
T KOG4221|consen 184 DSRVIVLPSGALEISGLQPSDTGEYRCVVTGGAS--QRTSNEAELTVLSDPGALNK--LVFLDEPSNAVVVEGDDVVLEC 259 (1381)
T ss_pred CCcEEEcCCCcEEecccccCCCceEEEEEecCCc--CCccceeEEEecCCcccccc--eeeecCCCccccccCCcEEEEE
Confidence 4499999999999999999999999999998764 34467788988744331110 0112223334566677777777
Q ss_pred EEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEE
Q psy14896 422 VAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW 501 (813)
Q Consensus 422 ~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W 501 (813)
.++|.|.|.|.|.+++..|.-+
T Consensus 260 vvs~~p~p~v~Wlrng~~i~~d---------------------------------------------------------- 281 (1381)
T KOG4221|consen 260 VVSGVPKPSVKWLRNGEKISVD---------------------------------------------------------- 281 (1381)
T ss_pred EecCCCCCceEEeeCCeeeeec----------------------------------------------------------
Confidence 7776666666666665554211
Q ss_pred eeccccccceeccccCCCCCceEEee-CCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCcee
Q psy14896 502 FKEDYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 580 (813)
Q Consensus 502 ~k~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~ 580 (813)
..++... .+.|.|.++ +.+|+|.|+|+|+|..... ...+.|.|..+|.|...+.....
T Consensus 282 -------------------s~rivl~g~~slliS~a-~~~dSg~YtC~Atn~~D~i-dasaev~V~a~P~~~~~p~~l~A 340 (1381)
T KOG4221|consen 282 -------------------SYRIVLVGGSSLLISNA-TDDDSGKYTCRATNTNDSI-DASAEVTVLAPPGFTKAPTTLVA 340 (1381)
T ss_pred -------------------ceEEEEecccceEEecc-ccccCceEEEEecCCCccc-ccceEEEEEcCCCCCCCCcceee
Confidence 1334333 578999997 9999999999999954443 33478999999999888888888
Q ss_pred ccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEE
Q psy14896 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLK 660 (813)
Q Consensus 581 ~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~ 660 (813)
.++.++.|.|.+ .|.|.+.|.|||+|..+.. ++.+.+..++.|+|..+-..|+|.|.|.++|.+|.+... ..|.
T Consensus 341 ~e~~die~ec~~-~g~p~p~v~w~kNgd~~ip--sdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~---a~l~ 414 (1381)
T KOG4221|consen 341 HESMDIEFECPV-SGKPIPTVRWYKNGDRIIP--SDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAA---AQLE 414 (1381)
T ss_pred eeccceeEeCCC-CCCCcceEEEEecCcccCc--ccceEecCCCCcEEEEEecccchhhhhhhccCcccccch---hhhe
Confidence 889999999999 7889999999999987433 566777777779999999999999999999999876544 3444
Q ss_pred EccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEe-----cCCCCCeEEEEeCCcccCCCc--eeeecceEEEECCCCC
Q psy14896 661 VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA-----FGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKV 733 (813)
Q Consensus 661 v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~-----~g~P~p~i~W~k~g~~l~~~~--~~~~~~~~L~i~~v~~ 733 (813)
|...|....... .--......+..-++--+.|.. .+.+-+.++|++-.......+ ...+.+-.+.+.+++.
T Consensus 415 vv~~p~~~~s~~--~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p 492 (1381)
T KOG4221|consen 415 VVPQPASASSDL--LPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSP 492 (1381)
T ss_pred eccCCcccccCc--cccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeeccc
Confidence 433332222110 0001111233333333344443 344567899986433222221 1122233455555555
Q ss_pred CCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCceeecCCCeEEEEEEEcccCCc----eEEEEECCEecc
Q psy14896 734 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV----TYSWFRNGELGH 803 (813)
Q Consensus 734 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~----~v~W~k~g~~l~ 803 (813)
.-.-.+.|.|.|..|+...+..|.|..+|+ .+.. ...+.+--++|.+.+.|++ .|+|||.+....
T Consensus 493 ~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE---gp~~--~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~ 561 (1381)
T KOG4221|consen 493 LTMYFFRVRAKNEAGSGESSAPLKVTTQPE---GPVQ--LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSED 561 (1381)
T ss_pred ceeEEEEEeccCcccCCccCCceEEecCCC---CCcc--ccccccCcceEEEEecCCCCCCCCceEEEEEEEcC
Confidence 554555566679999999999999999998 2222 5556677889999999988 899999776655
No 5
>KOG4221|consensus
Probab=100.00 E-value=4.7e-38 Score=339.07 Aligned_cols=474 Identities=18% Similarity=0.201 Sum_probs=325.2
Q ss_pred CCceeeeeeecccccceEeeccccceeeeeeeCCCCCCCCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEe
Q psy14896 150 MEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF 229 (813)
Q Consensus 150 ~d~~~y~C~~~~~~~~~~~~~~~~~~~~l~v~~p~~~~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~ 229 (813)
.+.|.|.|.+...... .-.+..+.|.+.. .+.|..++.+..+..| +++.|.|.+.+.|.|.+.|.
T Consensus 111 ~~eg~Yqc~atv~~~g----si~Sr~a~v~~a~------~~~f~~~~~~~t~~~g-----~ta~f~c~vn~e~~p~i~w~ 175 (1381)
T KOG4221|consen 111 VDEGVYQCLATVEDVG----SILSRTAKVALAG------LADFALQPESTTLLYG-----QTALFSCEVNAEPVPTIMWL 175 (1381)
T ss_pred ccCceEEEEEEccccc----eeecceEEEEecc------cCccccCccceeEecC-----CcEEEEEEEcCccCceeEEe
Confidence 5889999999754222 2223333344433 3678888999998887 67999999999999999999
Q ss_pred ecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecc------cccCCC
Q psy14896 230 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE------FNLKRA 303 (813)
Q Consensus 230 k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~------~~~~~~ 303 (813)
||.+++ +..+......+|.|.|... +..|.|.|+|.|++..-...|..++|+|...+. |...+.
T Consensus 176 kn~~pl---------~~~~r~i~lpsG~L~I~~~-qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~ 245 (1381)
T KOG4221|consen 176 KNDQPL---------PLDSRVIVLPSGALEISGL-QPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPS 245 (1381)
T ss_pred cccccc---------cCCCcEEEcCCCcEEeccc-ccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCC
Confidence 999866 2333444466999999996 999999999999998777668889998873332 445577
Q ss_pred CceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCc
Q psy14896 304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 383 (813)
Q Consensus 304 ~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~ 383 (813)
+..+..|+.+.|.|.+ .|.|.|+|.|.|||..+.... .++.....+.|.|.+++.+|+|.|+|+|+|..- .....
T Consensus 246 ~~~v~~g~~v~leCvv-s~~p~p~v~Wlrng~~i~~ds-~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D---~idas 320 (1381)
T KOG4221|consen 246 NAVVVEGDDVVLECVV-SGVPKPSVKWLRNGEKISVDS-YRIVLVGGSSLLISNATDDDSGKYTCRATNTND---SIDAS 320 (1381)
T ss_pred ccccccCCcEEEEEEe-cCCCCCceEEeeCCeeeeecc-eEEEEecccceEEeccccccCceEEEEecCCCc---ccccc
Confidence 8889999999999995 899999999999999875554 777777788999999999999999999999432 22234
Q ss_pred eeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccc
Q psy14896 384 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGP 463 (813)
Q Consensus 384 ~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~ 463 (813)
+.|+|..+|.+... .....+.++..+.|+|.+.|.|.|.+.|+|+|..+..+
T Consensus 321 aev~V~a~P~~~~~--------p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ips-------------------- 372 (1381)
T KOG4221|consen 321 AEVTVLAPPGFTKA--------PTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPS-------------------- 372 (1381)
T ss_pred eEEEEEcCCCCCCC--------CcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcc--------------------
Confidence 78888877554321 22234566667777777766666666666666554322
Q ss_pred eEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEe-eCCeEEEeCCCCCCCC
Q psy14896 464 YFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDR 542 (813)
Q Consensus 464 y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~ 542 (813)
..+++ .++.|.|.-. -..|.
T Consensus 373 ----------------------------------------------------------dy~ki~~~~~lrIlgi-~~sde 393 (1381)
T KOG4221|consen 373 ----------------------------------------------------------DYFKIVGGGNLRILGI-VKSDE 393 (1381)
T ss_pred ----------------------------------------------------------cceEecCCCCcEEEEE-ecccc
Confidence 12222 2223666664 68899
Q ss_pred ceEEEEEEcCceeEEeecEEEEEeecccc------cccCCCceeccCCCceEEeCC--C--CCCCccEEEEccCCCCCcc
Q psy14896 543 GSYHCKASNKFGSIISESVQLAFGFIGEF------NLKRAPEIGNQNWGKAMFCDP--P--TNYPGVNYYWARDYFPNFV 612 (813)
Q Consensus 543 G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~------~~~~~~~~~~~g~~~~l~C~~--~--~~~p~~~v~W~k~~~~~~~ 612 (813)
|.|.|.++|..|..... +.+.+...|.+ ...+....+..-+...+.|+. + .+.+-+.++|++.... .
T Consensus 394 g~yQcvaen~~G~a~a~-a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~--~ 470 (1381)
T KOG4221|consen 394 GFYQCVAENDAGSAQAA-AQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEG--D 470 (1381)
T ss_pred hhhhhhhccCcccccch-hhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCC--c
Confidence 99999999999987444 45543322211 111111222222222233332 1 3445677889865321 1
Q ss_pred cCCCeEEEeeCc-cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEE
Q psy14896 613 EEDKRVFVSYDG-ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR 691 (813)
Q Consensus 613 ~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~ 691 (813)
........+..| .+.+.++...-...++|.|.|..|....+ ..|.|..+|.-.. . ...+..--
T Consensus 471 ~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS---~pLkV~t~pEgp~------------~-~~a~ats~ 534 (1381)
T KOG4221|consen 471 VRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESS---APLKVTTQPEGPV------------Q-LQAYATSP 534 (1381)
T ss_pred hhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccC---CceEEecCCCCCc------------c-ccccccCc
Confidence 111222233344 24455555555555566677888765443 6788888775211 2 45566677
Q ss_pred EEEEecCCCCC----eEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 692 LECVAFGYPVP----SYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 692 l~C~~~g~P~p----~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
+.|.+...|++ .|+|||......... +++.....++|.++...+...|.|+|.|..|...++..|.|.
T Consensus 535 ~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~ 609 (1381)
T KOG4221|consen 535 TTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVR 609 (1381)
T ss_pred ceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEE
Confidence 89999988887 899999876554222 345556789999999999999999999999998888888887
No 6
>KOG4222|consensus
Probab=100.00 E-value=6.2e-38 Score=336.22 Aligned_cols=409 Identities=22% Similarity=0.326 Sum_probs=302.6
Q ss_pred cccCCCCceeecCCCeEEEecCCCCCCcceEEEeecccccc-ccCCccEEEccCccEEEeeee-----ecCCeeeEEEEe
Q psy14896 298 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF-VEEDKRVFVSYDGALYFSALE-----QIDAGNYSCNVQ 371 (813)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~-~~~~~~~~~~~~~~L~i~~v~-----~~D~G~Y~C~a~ 371 (813)
+...+....+..++.++|.|. +.|.|+|+|+|+|+|+... ...........+|+|.+..+. ..|.|.|+|+|.
T Consensus 34 iiehp~d~vvs~~~patlnc~-asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvas 112 (1281)
T KOG4222|consen 34 IIEHPHDLVVSKGEPATLNCK-ASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVAS 112 (1281)
T ss_pred eEecchhhhccCCCCceeecC-CCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeec
Confidence 333456667778889999999 5899999999999996432 223333445577877765542 238999999999
Q ss_pred eeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCCCCceeccccc
Q psy14896 372 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR 451 (813)
Q Consensus 372 n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~ 451 (813)
|..|..........+.+.... ..+ ......+..|+.+.|+|.-.
T Consensus 113 n~~g~avSr~a~L~vavlrdd--frv-------~prd~~~a~ge~avlEcgpP--------------------------- 156 (1281)
T KOG4222|consen 113 NRLGEAVSRGASLIVAVLRDD--FRV-------SPRDVQAAVGEEAVLECGPP--------------------------- 156 (1281)
T ss_pred CccceeeecCceEEEEEechh--ccc-------CcccccccccceeEEeccCC---------------------------
Confidence 988864433322222222110 000 01112344455555555431
Q ss_pred eEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeE
Q psy14896 452 ILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL 531 (813)
Q Consensus 452 ~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l 531 (813)
.|+|.|.++|.|+|+++. ......+..+++|.|
T Consensus 157 ----------------------------------------~ghpeptvSw~Kdg~pl~-------~~~~~~~~lisgG~L 189 (1281)
T KOG4222|consen 157 ----------------------------------------RGHPEPTVSWVKDGKPLD-------HYDVPIIALISGGNL 189 (1281)
T ss_pred ----------------------------------------CCCCCCcceeecCCCccc-------cccceeEEEecCCcE
Confidence 344555555555554321 112234455788999
Q ss_pred EEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCc
Q psy14896 532 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF 611 (813)
Q Consensus 532 ~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~ 611 (813)
.|.++ +..|+|.|.|+|.|.+|...+..+.|.|...|.|........+..|..+.+.|.+ .|.|.|.|.|.|++..
T Consensus 190 lIsnv-rksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v-~GdP~P~Vrwkk~~~~-- 265 (1281)
T KOG4222|consen 190 LISNV-RKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRV-GGDPQPTVRWKKDDPS-- 265 (1281)
T ss_pred EEecc-ccCCCceeeeeecccccccccccceeeeccCCccccccccceeeccccccccccc-CCCCCCceeeeccCCC--
Confidence 99997 9999999999999999999999999999999999999889999999999999999 8999999999997754
Q ss_pred ccCCCeEEEeeC-ccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeE
Q psy14896 612 VEEDKRVFVSYD-GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 690 (813)
Q Consensus 612 ~~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v 690 (813)
+.. .++.+..+ .+|.|.+++..|.|.|.|.|.|..|..+.. ..++|..+|.... ...+..+..|..+
T Consensus 266 ~P~-~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~as---a~ltV~apP~f~k--------kp~dq~v~lg~~v 333 (1281)
T KOG4222|consen 266 LPR-SRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEAS---ATLTVQAPPSFGK--------KPRDQKVALGGTV 333 (1281)
T ss_pred CCc-cceeeeeccccccccccCCCcccceeeeccccccccccc---cceEEecCccccc--------ccCccccccCceE
Confidence 333 45555555 889999999999999999999999987665 6788988886654 3444778899999
Q ss_pred EEEEEecCCCCCeEEEEeCCcc-cCC-------Cce-eeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE--
Q psy14896 691 RLECVAFGYPVPSYNWTRRGSP-LPR-------NAY-FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ-- 759 (813)
Q Consensus 691 ~l~C~~~g~P~p~i~W~k~g~~-l~~-------~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~-- 759 (813)
+|.|.+.|+|+|.+.|.|.|.. |.. +.+ .-...+.|+|.++...|.|.|.|...|..|+......+.+.
T Consensus 334 t~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~ 413 (1281)
T KOG4222|consen 334 TFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV 413 (1281)
T ss_pred EeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEee
Confidence 9999999999999999998752 211 111 11224589999999999999999999998876655555443
Q ss_pred -----cCCcccccCCceeecCCCeEEEEEEEcccCCceEEEEECCEeccccc
Q psy14896 760 -----AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMT 806 (813)
Q Consensus 760 -----~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~g~~l~~~~ 806 (813)
.+|.|...+.+.+..++..+.|.|.+.|.|.+.+.|+++|-.+...+
T Consensus 414 ~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d 465 (1281)
T KOG4222|consen 414 LTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPD 465 (1281)
T ss_pred eccCCCCceeeecccccccccCcccccChhhhCCCCCCchhhhcccccccCC
Confidence 23456677888888889999999999999999999999998876544
No 7
>KOG4194|consensus
Probab=99.97 E-value=2.1e-30 Score=260.50 Aligned_cols=272 Identities=23% Similarity=0.384 Sum_probs=218.9
Q ss_pred ccccCeEEEEEeec--cCCCcEEEeeccccccceeccccCC-CCCce---E---EeeCCeEEEeCCCCCCCCceEEEEEE
Q psy14896 480 SILNDITLSCYAGG--YPNPSYEWFKEDYVQDRLVANLIDP-LSDKR---F---TLSGGNLIINDPRQVEDRGSYHCKAS 550 (813)
Q Consensus 480 ~~g~~~~l~C~~~g--~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~~---~---~~~~~~l~i~~~~~~~d~G~Y~C~a~ 550 (813)
..|++++|+|.+.+ ..+.++.|.++.+............ ....| + ....+.|.+.++ ...|.|.|.|+++
T Consensus 516 l~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV-t~td~grYQCVvt 594 (873)
T KOG4194|consen 516 LIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV-TFTDEGRYQCVVT 594 (873)
T ss_pred hhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee-ecccCceEEEEEe
Confidence 56899999999977 4556899999886433322221110 00110 0 011357899997 9999999999999
Q ss_pred cCceeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCC-cccCCCeEEEee-CccEEE
Q psy14896 551 NKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPN-FVEEDKRVFVSY-DGALYF 628 (813)
Q Consensus 551 n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~-~~~~~~~~~~~~-~~~L~i 628 (813)
|..|+..+..+.|.|...|.|...+.......|+.+.|.|.+ .|+|.|+|.|.|+|.+. ......|..+.. +..+.|
T Consensus 595 N~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaA-tG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~I 673 (873)
T KOG4194|consen 595 NHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAA-TGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFI 673 (873)
T ss_pred cccCcchhheeEEEeeccCccccCcccceeecccceeeeeec-cCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEE
Confidence 999999999999999999999999889999999999999999 89999999999998652 233344555554 556999
Q ss_pred EeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC-CeEEEE
Q psy14896 629 SALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV-PSYNWT 707 (813)
Q Consensus 629 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~-p~i~W~ 707 (813)
.++..+|+|.|+|.|.|.+|+.... +.|.|.+.|.... +..+..|..|+++.|.|.+.|.|+ |.+.|+
T Consensus 674 tnvk~eD~GiYtC~A~n~AG~isan---AtL~V~e~p~f~~--------PL~~~~V~~get~vlqC~a~~~~a~pr~~W~ 742 (873)
T KOG4194|consen 674 TNVKIEDQGIYTCTAQNVAGQISAN---ATLTVLETPSFSI--------PLEDQLVVVGETLVLQCLAEGAPADPRLEWF 742 (873)
T ss_pred ecccccccceeEEeeeccccceeec---eEEEEecCCcccc--------cccceEEEecceEEEEEecCCCCCCcccccc
Confidence 9999999999999999999876554 7788888775432 455678999999999999999998 999999
Q ss_pred eCCcccCCCc--eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcc
Q psy14896 708 RRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF 764 (813)
Q Consensus 708 k~g~~l~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~ 764 (813)
|+.++|.-.. .+...+..|++.+...+|+|.|+|+..|..|.....+.+.|...+..
T Consensus 743 k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~ 801 (873)
T KOG4194|consen 743 KEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKC 801 (873)
T ss_pred CCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCc
Confidence 9999986554 45667889999999999999999999999999988888888766653
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.97 E-value=2.9e-29 Score=256.55 Aligned_cols=246 Identities=21% Similarity=0.299 Sum_probs=178.6
Q ss_pred ccccCeEEEEEe-----eccCCCcEEEeeccccccceeccccCCCCCceEEeeCC-eEEEeCCCCCCCCceEEEEEEcCc
Q psy14896 480 SILNDITLSCYA-----GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-NLIINDPRQVEDRGSYHCKASNKF 553 (813)
Q Consensus 480 ~~g~~~~l~C~~-----~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~~d~G~Y~C~a~n~~ 553 (813)
.+|+.+.|.|.+ .|.|.++++|+|+|... .......++ .|.|.++ ..+|+|.|+|.|.|..
T Consensus 39 ~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~------------~~~~~~~~g~~l~i~~~-~~~DsG~Y~C~a~N~~ 105 (326)
T PHA02785 39 LENEPVILPCPQINTLSSGYNILDILWEKRGADN------------DRIIPIDNGSNMLILNP-TQSDSGIYICITKNET 105 (326)
T ss_pred hcCCCEEEECCCccccccCCCCceEEEEECCCcc------------ceEEEccCCceEEEccc-CcccCeEEEEEEECCC
Confidence 579999999997 79999999999998321 122333344 5888886 8899999999999998
Q ss_pred eeEEeecEEEEEeecc--cccccCCCceeccCCCceEEeCC----CCCCCccEEEEccCCCCCcccCCCeEEEeeCccEE
Q psy14896 554 GSIISESVQLAFGFIG--EFNLKRAPEIGNQNWGKAMFCDP----PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY 627 (813)
Q Consensus 554 g~~~s~~~~l~v~~~p--~~~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~ 627 (813)
|... .++.|.|.... .+.....+..+.+|..+.|.|.. ..+.|++.|+|+++.. + ...++....++.|.
T Consensus 106 g~~~-~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~---~-~~~r~~~~~~~~L~ 180 (326)
T PHA02785 106 YCDM-MSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR---L-RNKRLKQRTPGIIT 180 (326)
T ss_pred cceE-EEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc---c-CCcceEecCCCeEE
Confidence 7653 33666664432 23334456667789999999973 1467899999998652 2 34566666678999
Q ss_pred EEeecccCCeeEEEEEEeeecCcccc-CceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC---e
Q psy14896 628 FSALEQIDAGNYSCNVQSKVSDTGRN-GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP---S 703 (813)
Q Consensus 628 i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p---~ 703 (813)
|.+++.+|+|.|+|.|.|.+|..... ...+.|.|..+...+.+. .+....+..|++++|.|.+.|.|.+ .
T Consensus 181 i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~------~p~~~~~~~G~~v~L~C~a~g~P~~~~~~ 254 (326)
T PHA02785 181 IEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ------LPEGVVTSIGSNLTIACRVSLRPPTTDAD 254 (326)
T ss_pred EeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec------CCCcEEecCCCcEEEEEEEECCCCCCCce
Confidence 99999999999999999998764322 223456664322111111 1233567789999999999998874 8
Q ss_pred EEEEeCCcccCCCc-----eee------------ecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896 704 YNWTRRGSPLPRNA-----YFE------------NFNRILTIPNVKVEDQGEYICRASNDRSA 749 (813)
Q Consensus 704 i~W~k~g~~l~~~~-----~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 749 (813)
|.|+|||..|.... ++. .....|+|.+++.+|+|.|+|.|.|..|.
T Consensus 255 v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 255 VFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred EEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 99999999885421 110 01357999999999999999999998854
No 9
>KOG3515|consensus
Probab=99.97 E-value=2.1e-28 Score=260.53 Aligned_cols=570 Identities=15% Similarity=0.160 Sum_probs=370.7
Q ss_pred cccccEEEEeeeccC-CCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEe
Q psy14896 207 SILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 285 (813)
Q Consensus 207 ~~g~~v~l~C~~~g~-P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s 285 (813)
.+|++|.|.|.+.++ |.+.+.||+.++.+ .+.+..+.+.+|..... ..+.-+.|.|+|.|..+....
T Consensus 20 ~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~~~~c~a~ns~~~~~~ 87 (741)
T KOG3515|consen 20 RLGEDVPLPCRVNSNPPEIDVEWYHSTSGE-----------HGRYATIADPTLVTTGD-VRDTVAELNCRAFNSVGMPSR 87 (741)
T ss_pred ccCCcceeeeecCCCCCCcceEEEecCccc-----------ccccccccCCceeeecc-hhhhhhhhhhhhcccccCcee
Confidence 345889999999765 56699999999753 24444455667776664 578888999999999888878
Q ss_pred eeeEEeeeeecccccCCCCceeecCCCeEEEe-cCCCCCCcceEEEeeccccccccCCccEEE---------ccCccEEE
Q psy14896 286 ESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFC-DPPTNYPGVNYYWARDYFPNFVEEDKRVFV---------SYDGALYF 355 (813)
Q Consensus 286 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C-~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~---------~~~~~L~i 355 (813)
..+.+.+.+++.-...........+..+.+.| ....+.|.+++.|..++.-.......+... .....|.+
T Consensus 88 ~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~ 167 (741)
T KOG3515|consen 88 CPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQ 167 (741)
T ss_pred cceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceee
Confidence 88889998888766666666667777788888 557888999999998876432222211111 11235889
Q ss_pred eeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEe-ecCCCeeeEe
Q psy14896 356 SALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 434 (813)
Q Consensus 356 ~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~i~W~ 434 (813)
...+.+|.|.|+|.|.|.............+.|..+......... ..-..+.+|+.+.|.|.+. |+|.+.++|+
T Consensus 168 ~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~-----~~~qsF~~g~~inlvc~~~gg~P~~~~~w~ 242 (741)
T KOG3515|consen 168 TVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGA-----QEQQSFTEGQTINLVCNAQGGNPSQQQTWY 242 (741)
T ss_pred EEEEecCCceeEcccccccCccccccceeEeecccccccceecch-----hhcCcccccceEEEEehhhcCCcchhhhhc
Confidence 999999999999999985432222333344444443322222211 1225789999999999775 6899999999
Q ss_pred ecCCcCCCCceeccccceEEEcc--------cccccceEEeCCC------ceEe-----------cccccccccCeEEEE
Q psy14896 435 RRGSPLPRNAYFENFNRILTIPN--------VKMRGPYFIKQPT------DVVF-----------DLSKRSILNDITLSC 489 (813)
Q Consensus 435 ~~~~~l~~~~~~~~~~~~l~i~~--------~~~~g~y~~~~~~------~~~~-----------~~~~~~~g~~~~l~C 489 (813)
++..++...+.........++.. -...-...|.+.+ ...+ .......|+...+.|
T Consensus 243 ~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c 322 (741)
T KOG3515|consen 243 KDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSC 322 (741)
T ss_pred cccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccccccccce
Confidence 99887765422222111111111 1112233365554 0000 001135678888888
Q ss_pred Ee-eccCCCcEEEeeccccccceeccccCCCCCc-eEEeeCC-eEEEeCCCCCCCCceEEEEEEcCceeE-EeecEEEEE
Q psy14896 490 YA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDK-RFTLSGG-NLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQLAF 565 (813)
Q Consensus 490 ~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~-~~~~~~~-~l~i~~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~l~v 565 (813)
.. .++|.+.+.|+|+....... ....... ....... .+.... ....|.|.|+|.|.+..... .+....+.+
T Consensus 323 ~~sss~p~~~i~w~~~~~~~~~~----~~~~~~t~~~~~v~~~~~~~q~-~~~~~~g~v~c~a~~~~~~~~sss~~~l~~ 397 (741)
T KOG3515|consen 323 VSSSSKPPAHIAWYKDTKMPKGS----QKASSKTSNMGGVAVISHYAQP-SSQQDGGQVTCPADNLELAHSSSSSFLLPV 397 (741)
T ss_pred eccCCCCccceeeeccCcccccc----cCcccCCCcccceeeEEeeecc-cchhcCceEEccccccccccccccceeccc
Confidence 85 56888999999965321110 0000111 1111111 233334 48899999999999875432 233456667
Q ss_pred eecccccccCCCceeccCCC-ceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCcc-EEEEeecccCCeeEEEEE
Q psy14896 566 GFIGEFNLKRAPEIGNQNWG-KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA-LYFSALEQIDAGNYSCNV 643 (813)
Q Consensus 566 ~~~p~~~~~~~~~~~~~g~~-~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~-L~i~~~~~~d~G~Y~C~a 643 (813)
.+.|.+.....+..+..+.+ ....-.+....+.+.+.|.+++.++.......+.+...+- +.+.++.+.|.|.|.|+|
T Consensus 398 l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~ta 477 (741)
T KOG3515|consen 398 LPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTA 477 (741)
T ss_pred cCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccceeeeccCCcceeee
Confidence 77777665555544433333 2222222134456889999998775555555555555444 458889999999999999
Q ss_pred EeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeCCcccCCCcee--
Q psy14896 644 QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRNAYF-- 719 (813)
Q Consensus 644 ~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~~~~-- 719 (813)
.|..|.+.. .+.+.+.+.|....+.. ......|+++.+.|.....|. -.+.|.|.|.+.......
T Consensus 478 tns~gg~~~---~~~~~~~~sp~~~~~~~--------~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~ 546 (741)
T KOG3515|consen 478 TNSPGGAQA---YLLLGVHTSPHNHHLQD--------QVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDA 546 (741)
T ss_pred ccCCCceee---EEeeccccCCccccccc--------ccccCCCCcccceeeccccccchhhhcccccCCCCcccccccc
Confidence 999986543 24567777776655422 245677888999999997774 379999999877443222
Q ss_pred ----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCce-eecCC-CeEEEEEEEcccCCceE
Q psy14896 720 ----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDK-HMDNQ-ADLTWTCEAFGVPDVTY 793 (813)
Q Consensus 720 ----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~-~~~~g-~~~~l~C~~~g~p~~~v 793 (813)
......+.+.....--+|+|.|.+.|..-.+.....|.+..+|........+ +..+| ..++..|.+.|.|.+.+
T Consensus 547 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~as~~~~a~~~~~~~~ 626 (741)
T KOG3515|consen 547 PQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNASDDCVASGVPSTSF 626 (741)
T ss_pred cccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccccCCceeeeccCcccccccceeccccccee
Confidence 2234568888877778899999999932335556777777777665433332 23333 37899999999999999
Q ss_pred EEEECCEecccccccc
Q psy14896 794 SWFRNGELGHQMTDLL 809 (813)
Q Consensus 794 ~W~k~g~~l~~~~~~~ 809 (813)
.|-|++.....+..+.
T Consensus 627 ~~~k~p~~~~~~~~~~ 642 (741)
T KOG3515|consen 627 TTAKTPLQTTEGPHIR 642 (741)
T ss_pred ecccCCCcccCCceEE
Confidence 9999999877766654
No 10
>KOG4194|consensus
Probab=99.96 E-value=4.3e-29 Score=251.13 Aligned_cols=229 Identities=23% Similarity=0.382 Sum_probs=184.0
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeecc--CCCCeEEEeecccccccccccccccCCCccEEee------------
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGG--YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS------------ 254 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g--~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~------------ 254 (813)
+|+|..+|.++....| +.++|+|.+.+ .-+.++.|.|+++.+.+.. .....++...
T Consensus 503 kpqI~~qPe~~~al~g-----~nirftC~a~sssasplsi~WR~dnevq~rv~-----ved~a~~~~q~r~~~~~e~~~~ 572 (873)
T KOG4194|consen 503 KPQIVTQPETVSALIG-----ENIRFTCNAYSSSASPLSIEWRKDNEVQPRVD-----VEDFATFLSQNRNGTFGEREEY 572 (873)
T ss_pred CcceecCchHhhhhhc-----cceEEEEEeccCCCCCceeEeeeccccCcccc-----hhcchhhhhhhccCccchhhhh
Confidence 5889999998887777 56999999966 3345899999987443221 1111111111
Q ss_pred CCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCcceEEEeecc
Q psy14896 255 GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDY 334 (813)
Q Consensus 255 ~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~ 334 (813)
.+-|.+.+ |+..|+|.|.|+++|.+|+..+..+.|+|...|.|...+.......|+.+.|.|. +.|.|.|+|.|-|+|
T Consensus 573 ~~~L~L~n-Vt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~Ca-AtG~P~PeIawqkdg 650 (873)
T KOG4194|consen 573 TAILHLDN-VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECA-ATGHPRPEIAWQKDG 650 (873)
T ss_pred hheeeeee-eecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeee-ccCCCCcceeehhcC
Confidence 23366667 4899999999999999999999999999999999999999999999999999998 589999999999998
Q ss_pred cc-ccccCCccEEEccC-ccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCCCcCCC
Q psy14896 335 FP-NFVEEDKRVFVSYD-GALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 412 (813)
Q Consensus 335 ~~-~~~~~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~ 412 (813)
.+ .+.....|+.+..+ ..+.|.+|+.+|+|.|+|.|.|.+|+.... ++|+|.+.|.+.. +..+..|.
T Consensus 651 gtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isan---AtL~V~e~p~f~~--------PL~~~~V~ 719 (873)
T KOG4194|consen 651 GTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISAN---ATLTVLETPSFSI--------PLEDQLVV 719 (873)
T ss_pred CCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeec---eEEEEecCCcccc--------cccceEEE
Confidence 76 44455566666664 589999999999999999999999875544 8999988765432 35567899
Q ss_pred CCCcEEEEEEEeecCC-CeeeEeecCCcC
Q psy14896 413 AGDKVRLECVAFGYPV-PSYNWTRRGSPL 440 (813)
Q Consensus 413 ~g~~~~l~C~~~g~p~-p~i~W~~~~~~l 440 (813)
.|+++.|.|.+.+.|+ |.+.|+|++++|
T Consensus 720 ~get~vlqC~a~~~~a~pr~~W~k~d~pi 748 (873)
T KOG4194|consen 720 VGETLVLQCLAEGAPADPRLEWFKEDKPI 748 (873)
T ss_pred ecceEEEEEecCCCCCCccccccCCCCce
Confidence 9999999999999887 899999988887
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.96 E-value=1.1e-27 Score=244.97 Aligned_cols=211 Identities=20% Similarity=0.310 Sum_probs=150.4
Q ss_pred ccccEEEEeee-----ccCCCCeEEEeecccccccccccccccCCCccEEeeCCe-EEEcCCccccCCeeEEEEeecCce
Q psy14896 208 ILNDITLSCYA-----GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN-LIINDPRQVEDRGSYHCKASNKFG 281 (813)
Q Consensus 208 ~g~~v~l~C~~-----~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~-l~i~~~~~~~d~G~Y~C~a~n~~g 281 (813)
+|+.+.|.|.+ .|.|.++|.|||+|... ...+...+|+ |+|.+. ..+|+|.|+|.|+|..|
T Consensus 40 ~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~------------~~~~~~~~g~~l~i~~~-~~~DsG~Y~C~a~N~~g 106 (326)
T PHA02785 40 ENEPVILPCPQINTLSSGYNILDILWEKRGADN------------DRIIPIDNGSNMLILNP-TQSDSGIYICITKNETY 106 (326)
T ss_pred cCCCEEEECCCccccccCCCCceEEEEECCCcc------------ceEEEccCCceEEEccc-CcccCeEEEEEEECCCc
Confidence 34789999997 68899999999998532 1233344554 666664 88999999999999988
Q ss_pred eeEeeeeEEeeeeecc--cccCCCCceeecCCCeEEEecC----CCCCCcceEEEeeccccccccCCccEEEccCccEEE
Q psy14896 282 SIISESVQLAFGFIGE--FNLKRAPEIGNQNWGKAMFCDP----PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYF 355 (813)
Q Consensus 282 ~~~s~~~~l~v~~~~~--~~~~~~~~~~~~~~~~~l~C~~----~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i 355 (813)
.. +.++.|+|....+ +.....+..+.+|....|.|.. ..+.|.++++|+++.. + ...++....++.|.|
T Consensus 107 ~~-~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~---~-~~~r~~~~~~~~L~i 181 (326)
T PHA02785 107 CD-MMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR---L-RNKRLKQRTPGIITI 181 (326)
T ss_pred ce-EEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc---c-CCcceEecCCCeEEE
Confidence 65 4567777755432 2233455667788889999973 2467999999998653 2 345666666789999
Q ss_pred eeeeecCCeeeEEEEeeeccccCCC-CCceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCC---ee
Q psy14896 356 SALEQIDAGNYSCNVQSKVSDTGRN-GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP---SY 431 (813)
Q Consensus 356 ~~v~~~D~G~Y~C~a~n~~g~~~~~-s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p---~i 431 (813)
.+++.+|+|.|+|.|.|..|..... +..+.|.|..+.. +|. +..+....+..|+.++|.|.+.|.|.+ .+
T Consensus 182 ~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~-----pp~-~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v 255 (326)
T PHA02785 182 EDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRII-----PPT-MQLPEGVVTSIGSNLTIACRVSLRPPTTDADV 255 (326)
T ss_pred eecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCC-----Cce-ecCCCcEEecCCCcEEEEEEEECCCCCCCceE
Confidence 9999999999999999987754321 2224455543211 111 111234567789999999999998864 79
Q ss_pred eEeecCCcCCC
Q psy14896 432 NWTRRGSPLPR 442 (813)
Q Consensus 432 ~W~~~~~~l~~ 442 (813)
.|+++|..+..
T Consensus 256 ~W~kng~~i~~ 266 (326)
T PHA02785 256 FWISNGMYYEE 266 (326)
T ss_pred EEEECCEECCC
Confidence 99999988753
No 12
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.92 E-value=3.3e-21 Score=229.06 Aligned_cols=128 Identities=15% Similarity=0.242 Sum_probs=108.3
Q ss_pred CCCchhhhcc--CCeEEEEecCCcCCHHHHHhHcccC-CCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCC-
Q psy14896 27 LRCPQHWVQY--RDSCYRFVKSPLKTRNDAKLNCKSL-DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNL- 102 (813)
Q Consensus 27 ~~Cp~~w~~~--~~~Cy~~~~~~~~~~~~a~~~C~~~-~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~- 102 (813)
..||.||..| +++||+|+.+. ++|.+|++.|+.+ |||||+|+|++|++||.+++.... ...+||||+|...++.
T Consensus 316 ~~CP~GW~~f~~~g~CYk~~~e~-~TW~dAe~~C~s~GGAhLAsI~S~eEn~FL~~lv~~s~-~~~vWIGLsD~~~EG~g 393 (2740)
T TIGR00864 316 PHCPKDGEIFEENGHCFQIVPEE-AAWLDAQEQCLARAGAALAIVDNDALQNFLARKVTHSL-DRGVWIGFSDVNGAEKG 393 (2740)
T ss_pred CCCCCCCeecCCCCEEEEEeCCc-cCHHHHHHHhhccCCeEEecCCCHHHHHHHHHHhhccC-CccEEEeeeCCCCCCce
Confidence 5799999755 89999999995 9999999999999 599999999999999999885432 3469999999988876
Q ss_pred -eEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896 103 -WVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI 161 (813)
Q Consensus 103 -~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~ 161 (813)
|.|.||+.+..+.+|..+||++..+++|+.|... + . |+|..|.....|+|+...
T Consensus 394 ~WvWsDGS~l~~YtnW~pGEPNn~~~EdCV~l~~~-g--~--WND~~Cs~~~~FICE~~~ 448 (2740)
T TIGR00864 394 PAHQGEAFEAEECEEGLAGEPHPARAEHCVRLDPR-G--Q--CNSDLCNAPHAYVCELNP 448 (2740)
T ss_pred eeEECCCCcccCccCcCCCCCCCCCCCCCEEEcCC-C--C--EEccCCCCCeeEEeEECC
Confidence 9999999984336877789998777899988532 1 3 569999999999999864
No 13
>cd03599 CLECT_DGCR2_like C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS). CLECT_DGCR2_like: C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DGS is also known velo-cardio-facial syndrome (VCFS). DGS is a genetic abnormality that results in malformations of the heart, face, and limbs and is associated with schizophrenia and depressive disorders. DGCR2 is a candidate for involvement in the pathogenesis of DGS since the DGCR2 gene lies within the minimal DGS critical region (MDGRC) of 22q11, which when deleted gives rise to DGS, and the DGCR2 gene is in close proximity to the balanced translocation breakpoint in a DGS patient having a balanced translocation.
Probab=99.91 E-value=3.3e-24 Score=188.86 Aligned_cols=128 Identities=20% Similarity=0.257 Sum_probs=102.8
Q ss_pred CchhhhccCC--eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCC-------CCceEEEEecc--
Q psy14896 29 CPQHWVQYRD--SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP-------QRRKWYFGGTQ-- 97 (813)
Q Consensus 29 Cp~~w~~~~~--~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~-------~~~~w~g~~~~-- 97 (813)
||.||..|++ +||+++.+. +||.+|+.+|+.+||+||+|++.+|++||..++..... ...+||||.+.
T Consensus 1 CP~gw~~~~~~~~CYk~~~~~-~tw~dA~~~C~~~Gg~Lasi~s~~e~~fl~~l~~~~~~~~~~~~~~~~~WIGL~~~~~ 79 (153)
T cd03599 1 CPSGWHHYEGTASCYKVYLSG-ENYWDAVQTCQKVNGSLATFTTDQELQFILAQEWDFDERVFGRKDQCKFWVGYQYVIT 79 (153)
T ss_pred CCCchhccCCCCeEEEEeCCc-CCHHHHHHHHHHcCCEEcCCCCHHHHHHHHHHHHhhcccccccccCCCEEEeeccccc
Confidence 9999999998 899999995 99999999999999999999999999999999854322 24689999532
Q ss_pred ----CCCCCeEEc-CCCCCCccccc----cCCCCCCcccCCeEEEEee-----ccccccceeeccCCCceeeeeee
Q psy14896 98 ----QSPNLWVNE-DGTNLNELDAA----FLPEPADNVQRDYLAYSFS-----QSLKRWGFERVTGMEPLLFICEA 159 (813)
Q Consensus 98 ----~~~~~~~W~-dgs~~~~~~~~----~~~~p~~~~~~~c~~~~~~-----~~~~~l~i~~~~~~d~~~y~C~~ 159 (813)
..+|.|.|+ ||+.+.| ..| ..++|++ ++++|+.+... .......|++..|.....|+|++
T Consensus 80 ~~~~~~eg~w~WsddGs~~~y-~~w~~~w~~gePn~-~~e~C~~~~~~~~~~~~~~~~~~W~d~~C~~~~~fiCq~ 153 (153)
T cd03599 80 NRNHSLEGRWEVAYKGSMEVF-LPPEPIFATGMSTN-DNVFCAQLQCFQIPSLRERGLHSWHAENCYEKSSFLCKR 153 (153)
T ss_pred ccCcccCCeEEEecCCcccee-cCccccCCCCCCCC-CCCCCeEEEeeccccccccccCeeeCccCCCCCcceeCC
Confidence 568899999 5999986 444 3337765 56899998531 11123456699999999999984
No 14
>cd03588 CLECT_CSPGs C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins. CLECT_CSPGs: C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins (CSPGs) in human and chicken aggrecan, frog brevican, and zebra fish dermacan. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Xenopus brevican is expressed in the notochord and the brain during early embryogenesis. Zebra fish dermacan is expressed in dermal bones and may play a role in dermal bone development. CSPGs do contain LINK domain(s) which bind HA. These LINK domains are considered by one classif
Probab=99.91 E-value=5.3e-24 Score=185.98 Aligned_cols=121 Identities=19% Similarity=0.369 Sum_probs=104.6
Q ss_pred CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCC
Q psy14896 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG 108 (813)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dg 108 (813)
||.||..|+++||+|+.+. ++|.+|++.|+.+||+||+|+|++|++||..++ ...+||||.+...++.|.|+||
T Consensus 1 Cp~gw~~~~~~Cy~~~~~~-~sw~~A~~~C~~~gg~La~i~s~~e~~fl~~~~-----~~~~WIGl~~~~~~~~~~W~dg 74 (124)
T cd03588 1 CEEGWDKFQGHCYRHFPDR-ETWEDAERRCREQQGHLSSIVTPEEQEFVNNNA-----QDYQWIGLNDRTIEGDFRWSDG 74 (124)
T ss_pred CCccceecCCEEEEEECCc-cCHHHHHHHHHhcCCEEeccCCHHHHHHHHHhc-----cCcEEecceecCCCCceEeCCC
Confidence 9999999999999999995 999999999999999999999999999998874 2468999999888899999999
Q ss_pred CCCCccccccCCCCCCc--ccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896 109 TNLNELDAAFLPEPADN--VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (813)
Q Consensus 109 s~~~~~~~~~~~~p~~~--~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~ 159 (813)
+++.| .+|..++|++. ..++|+.|.... ...|.+..|.....|+|++
T Consensus 75 ~~~~~-~~W~~~~p~~~~~~~~~Cv~~~~~~---~~~W~d~~C~~~~~fICe~ 123 (124)
T cd03588 75 HPLQF-ENWRPNQPDNFFATGEDCVVMIWHE---EGEWNDVPCNYHLPFTCKK 123 (124)
T ss_pred Ccccc-cCcCCCCCCCCCCCCCCeEEEecCC---CCeEcCCCCCCCCeeeeeC
Confidence 99987 67776688763 357899885432 2345599999999999986
No 15
>cd03597 CLECT_attractin_like C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP). CLECT_attractin_like: C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Mouse AtrN (the product of the mahogany gene) has been shown to bind Agouti protein and to function in agouti-induced pigmentation and obesity. Mutations in AtrN have also been shown to cause spongiform encephalopathy and hypomyelination in rats and hamsters. The cytoplasmic region of mouse ALP has been shown to binds to melanocortin receptor (MCR4). Signaling through MCR4 plays a role in appetite suppression. Attractin may have therapeutic potential in the treatment of obesity. Human attractin (hAtrN) has been shown to be expressed on activated T cells and released extracellularly. The
Probab=99.90 E-value=7.6e-24 Score=185.24 Aligned_cols=124 Identities=19% Similarity=0.308 Sum_probs=103.5
Q ss_pred CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcC---CCCceEEEEeccCCCCCeEE
Q psy14896 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD---PQRRKWYFGGTQQSPNLWVN 105 (813)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~---~~~~~w~g~~~~~~~~~~~W 105 (813)
||.||..|+++||+|+... ++|.+|+.+|+.+||+||+|++++|++||.+++.... ....+||||.+.. ++.|.|
T Consensus 1 Cp~gw~~~~~~Cy~~~~~~-~tw~~A~~~C~~~g~~La~i~~~~E~~fi~~~~~~~~~~~~~~~~WIGl~d~~-~g~w~W 78 (129)
T cd03597 1 CGEGWHLVGNSCLKINTAR-ESYDNAKLYCRNLNAVLASLTTQKKVEFVLKELQKHQMTKQKLTPWVGLRKIN-VSYWCW 78 (129)
T ss_pred CCCcCEEcCCEEEEEEcCC-CCHHHHHHHHHHcCCEEcCCCCHHHHHHHHHHHHhhcccCCCCceEEeeecCC-CCceEE
Confidence 9999999999999999995 9999999999999999999999999999998885431 2247899999875 678999
Q ss_pred cCCCCCCc-cccccCCCCCCcccCCeEEEEeeccccccceeeccCCCc-eeeeeee
Q psy14896 106 EDGTNLNE-LDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEP-LLFICEA 159 (813)
Q Consensus 106 ~dgs~~~~-~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~-~~y~C~~ 159 (813)
+||+++.+ +++|..++|++. ++|+.|..... ..|++..|... ..|+|++
T Consensus 79 ~Dgs~~~~~~~~W~~geP~~~--~~C~~~~~~~~---~~w~d~~C~~~~~~~iCe~ 129 (129)
T cd03597 79 EDMSPFTNTTLQWLPGEPSDA--GFCGYLEEPAV---SGLKANPCTNPVNGSVCER 129 (129)
T ss_pred CCCCCCCCccccCCCCCCCCc--ccEEEEccccc---CccccCCcCCCCcceeecC
Confidence 99999863 357777799863 79999854332 23559999998 6999974
No 16
>KOG3515|consensus
Probab=99.90 E-value=1.1e-22 Score=217.20 Aligned_cols=469 Identities=17% Similarity=0.137 Sum_probs=312.6
Q ss_pred CceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCc
Q psy14896 304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 383 (813)
Q Consensus 304 ~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~ 383 (813)
+..+..|+.+.|.|.+..+.|.+.+.|++.++.+. .+.....+.+|......++.-+.|.|+|.|..+. .....
T Consensus 16 ~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~--~~~~~ 89 (741)
T KOG3515|consen 16 TVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGM--PSRCP 89 (741)
T ss_pred ChhhccCCcceeeeecCCCCCCcceEEEecCcccc----cccccccCCceeeecchhhhhhhhhhhhcccccC--ceecc
Confidence 33778899999999998888999999999998753 5556667778999998888889999999998543 33334
Q ss_pred eeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEe--ecCCCeeeEeecCCcCCCC--------------ceec
Q psy14896 384 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF--GYPVPSYNWTRRGSPLPRN--------------AYFE 447 (813)
Q Consensus 384 ~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~--g~p~p~i~W~~~~~~l~~~--------------~~~~ 447 (813)
..+.+..++- -.+.........+..+.+.|.+. +.|.+.+.|..++...... ....
T Consensus 90 ~~l~v~~~pa--------~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~ 161 (741)
T KOG3515|consen 90 MILDVDYPPA--------CLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTE 161 (741)
T ss_pred eeeccccCcc--------ccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceecc
Confidence 5555555432 22223334567888999999664 5688899998876543221 1122
Q ss_pred cccceEEEcccccccceEEeCCCceEec-------------------------ccccccccCeEEEEEee-ccCCCcEEE
Q psy14896 448 NFNRILTIPNVKMRGPYFIKQPTDVVFD-------------------------LSKRSILNDITLSCYAG-GYPNPSYEW 501 (813)
Q Consensus 448 ~~~~~l~i~~~~~~g~y~~~~~~~~~~~-------------------------~~~~~~g~~~~l~C~~~-g~p~~~v~W 501 (813)
.....+.+..-...|.|+|.+-+..... ...-.+|+.+.|.|.+. |+|.+.++|
T Consensus 162 ~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w 241 (741)
T KOG3515|consen 162 PSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTW 241 (741)
T ss_pred ccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhh
Confidence 2233444455556899999876531110 01225678999999875 589999999
Q ss_pred eeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeecccc-cccCCCcee
Q psy14896 502 FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF-NLKRAPEIG 580 (813)
Q Consensus 502 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~-~~~~~~~~~ 580 (813)
+++..+.... .......... ....++.+..- ..++.-...|.+.| .+. ....+.+..++.. .+.......
T Consensus 242 ~~~s~~~~~~---sl~~~~~sg~-~v~~~~~~~~~-r~~~~~~~kc~a~n-~~~---~~~~tav~~~~~~~~Ist~~~~l 312 (741)
T KOG3515|consen 242 YKDSRPQSES---SLLSQEPSGD-TVSSTLVLRVG-RQDLQAQLKCKASN-LLA---ASQITAVQVKPTAVPISTSDSGL 312 (741)
T ss_pred ccccccchhh---hcccCCCCCC-ccccccccccc-ccchhhhhhccccC-ccc---cceeeecccccccccccCccccc
Confidence 9998654221 0000000000 01123333332 44555677899998 221 2234444444432 233333446
Q ss_pred ccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEE-EeeCc-----cEEEEeecccCCeeEEEEEEeeecCccccC
Q psy14896 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF-VSYDG-----ALYFSALEQIDAGNYSCNVQSKVSDTGRNG 654 (813)
Q Consensus 581 ~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~-~~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 654 (813)
..|+...+.|....++|.+.+.|+|+.... .....-.. ....+ .+........|.|.|+|.|.|..+. ...+
T Consensus 313 s~g~s~r~~c~~sss~p~~~i~w~~~~~~~-~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~-~~ss 390 (741)
T KOG3515|consen 313 SSGRSARSSCVSSSSKPPAHIAWYKDTKMP-KGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELA-HSSS 390 (741)
T ss_pred ccccccccceeccCCCCccceeeeccCccc-ccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccc-cccc
Confidence 778888999988789999999999965321 11100000 01111 2566677889999999999998844 4445
Q ss_pred ceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCC-CCeEEEEeCCcccCCCce----eeecceEEEEC
Q psy14896 655 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAY----FENFNRILTIP 729 (813)
Q Consensus 655 ~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P-~p~i~W~k~g~~l~~~~~----~~~~~~~L~i~ 729 (813)
..+.+.+.++|......++. ....+++.....-.+.|.| .+.+.|.+++.++..... .-.....+.+.
T Consensus 391 s~~~l~~l~~p~~L~~~~~~-------v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~ 463 (741)
T KOG3515|consen 391 SSFLLPVLPSPAFLVRHKTA-------VVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGAGLGSGV 463 (741)
T ss_pred cceeccccCCchhhhhcccc-------eeeccCccccccCcccCCCcccchhheecceecccccCceEEeeccccccccc
Confidence 66778888888776554443 3345555555554455666 468999999988866542 12223345577
Q ss_pred CCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCceeecCCCeEEEEEEEcccCC--ceEEEEECCEeccc
Q psy14896 730 NVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD--VTYSWFRNGELGHQ 804 (813)
Q Consensus 730 ~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~--~~v~W~k~g~~l~~ 804 (813)
++...|.|.|.|.|+|..|.+...+.+.+...|.+......+....|+++-+.|.....|. -.+.|.|.|.+...
T Consensus 464 ~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~ 540 (741)
T KOG3515|consen 464 NVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSD 540 (741)
T ss_pred eeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcc
Confidence 8999999999999999999999999999999999886666667778888999999988774 35999999988744
No 17
>cd03589 CLECT_CEL-1_like C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina. CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of the type found in CEL-1 from Cucumaria echinata and Echinoidin from Anthocidaris crassispina. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CEL-1 CTLD binds three calcium ions and has a high specificity for N-acteylgalactosamine (GalNAc). CEL-1 exhibits strong cytotoxicity which is inhibited by GalNAc. This protein may play a role as a toxin defending against predation. Echinoidin is found in the coelomic fluid of the sea urchin and is specific for GalBeta1-3GalNAc. Echinoidin has a cell adhesive activity towards human cancer cells which is not mediated through the CTLD. Both CEL-1 and Echinoidin are multimeric proteins comprised of multiple dimers linked by disulfide bonds.
Probab=99.89 E-value=3.5e-23 Score=185.69 Aligned_cols=128 Identities=19% Similarity=0.346 Sum_probs=108.9
Q ss_pred CchhhhccCCeEEEEecCCcCCHHHHHhHcccC-----CCeEeeeCCHhHHHHHHHHhhhc---CCCCceEEEEeccCCC
Q psy14896 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL-----DSDLANVNDADEHGFIMYQLFWQ---DPQRRKWYFGGTQQSP 100 (813)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~-----~~~L~~i~~~~e~~~i~~~~~~~---~~~~~~w~g~~~~~~~ 100 (813)
||.||..|+++||+|+... ++|.+|++.|+.+ +|+||+|+|++|++||..++... .....+||||.+...+
T Consensus 1 Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~~~~g~~~~La~i~s~~e~~~l~~~~~~~~~~~~~~~~WiGl~~~~~~ 79 (137)
T cd03589 1 CPTFWTAFGGYCYRFFGDR-LTWEEAELRCRSFSIPGLIAHLVSIHSQEENDFVYDLFESSRGPDTPYGLWIGLHDRTSE 79 (137)
T ss_pred CCcchhhhCCEEEEEeCCC-cCHHHHHHHHHhhcCCCCCceEcccCCHHHHHHHHHHHhhccccCCCCcEEEeeecCCcc
Confidence 9999999999999999995 9999999999997 69999999999999999988543 2345899999998889
Q ss_pred CCeEEcCCCCCCccccccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896 101 NLWVNEDGTNLNELDAAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (813)
Q Consensus 101 ~~~~W~dgs~~~~~~~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~ 159 (813)
+.|.|.||+++.| .+|..++|++.. .++|+.|..... ....|.+..|.....|+|+.
T Consensus 80 ~~~~W~dG~~~~~-~~W~~~~P~~~~~~~~C~~~~~~~~-~~~~W~d~~C~~~~~fIC~~ 137 (137)
T cd03589 80 GPFEWTDGSPVDF-TKWAGGQPDNYGGNEDCVQMWRRGD-AGQSWNDMPCDAVFPYICKM 137 (137)
T ss_pred CceEeCCcCcCCc-CCcCCCCCCCCCCCCCceeeecCCC-CCCeecCCCCCCCcceeeeC
Confidence 9999999999987 577666998754 679999866431 13456699999999999984
No 18
>PHA02642 C-type lectin-like protein; Provisional
Probab=99.89 E-value=9.5e-23 Score=185.64 Aligned_cols=124 Identities=18% Similarity=0.307 Sum_probs=104.1
Q ss_pred cccccccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCC
Q psy14896 20 QTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQS 99 (813)
Q Consensus 20 ~~~~~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~ 99 (813)
+........||.||..|+++||+|+.+. ++|.+|+..|+.+||+||+|++++|++||.++. ....+||||++...
T Consensus 79 ~~~~~k~~~CP~gW~~~~~kCYyfs~~~-ksW~eA~~~C~s~ga~La~I~seeE~~FL~~~~----~~~~yWIGLsd~~~ 153 (216)
T PHA02642 79 QEPTIKYVTCPKGWIGFGYKCFYFSEDS-KNWTFGNTFCTSLGATLVKVETEEELNFLKRYK----DSSDHWIGLNRESS 153 (216)
T ss_pred cCCCcccCCCCCcCEEECCEEEEEeCcc-cCHHHHHHHHhhCCCeEeeECCHHHHHHHHHhh----cCCeEEEEeEeCCC
Confidence 3344567899999999999999999994 999999999999999999999999999998874 23469999999999
Q ss_pred CCCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896 100 PNLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI 161 (813)
Q Consensus 100 ~~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~ 161 (813)
++.|.|+||++++. . +|.. +.++|+.+... .|.+..|.....|+|+...
T Consensus 154 e~~W~WvDGS~~n~-~-~~i~-----G~g~CAyLs~~------~i~s~~C~~~~~wIC~K~l 202 (216)
T PHA02642 154 NHPWKWADNSNYNA-S-FVIT-----GTGECAYLNDI------RISSSRVYANRKWICSKTY 202 (216)
T ss_pred CCceEECCCCccCc-c-eecc-----CCCceEEEeCC------ceEccCcCCCceEEeeeec
Confidence 99999999999986 2 3322 24789876432 3449999999999999964
No 19
>cd03590 CLECT_DC-SIGN_like C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). CLECT_DC-SIGN_like: C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR). This group also contains proteins similar to hepatic asialoglycoprotein receptor (ASGP-R) and langerin in human. These proteins are type II membrane proteins with a CTLD ectodomain. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DC-SIGN is thought to mediate the initial contact between dendritic cells and resting T cells, and may also mediate the rolling of DCs on epithelium. DC-SIGN and DC-SIGNR bind to oligosaccharides present on human tissues, as well as, on path
Probab=99.89 E-value=1e-22 Score=179.95 Aligned_cols=122 Identities=25% Similarity=0.465 Sum_probs=107.1
Q ss_pred CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCC
Q psy14896 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG 108 (813)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dg 108 (813)
||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++. ....+||||.+...++.|.|.||
T Consensus 1 Cp~~w~~~~~~Cy~~~~~~-~tw~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~---~~~~~WiGl~~~~~~~~~~W~dg 76 (126)
T cd03590 1 CPTNWKSFQSSCYFFSTEK-KSWEESRQFCEDMGAHLVIINSQEEQEFISKILS---GNRSYWIGLSDEETEGEWKWVDG 76 (126)
T ss_pred CCCCceEeCCEEEEEeCCC-cCHHHHHHHHHhCCCEEEeeCCHHHHHHHHHHhC---CCCCEEEeeecCCCcCCeEecCC
Confidence 9999999999999999994 9999999999999999999999999999999974 34689999999888899999999
Q ss_pred CCC--CccccccCCCCCCcc--cCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896 109 TNL--NELDAAFLPEPADNV--QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (813)
Q Consensus 109 s~~--~~~~~~~~~~p~~~~--~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~ 159 (813)
+++ .+ .+|..++|++.. .++|+.|.... ..|.+..|.+...|+|++
T Consensus 77 ~~~~~~~-~~W~~~~p~~~~~~~~~C~~~~~~~----~~w~~~~C~~~~~fiCek 126 (126)
T cd03590 77 TPLNSSK-TFWHPGEPNNWGGGGEDCAELVYDS----GGWNDVPCNLEYRWICEK 126 (126)
T ss_pred CCCCCcc-CCcCCCcCCCCCCCCCCCEEEECCC----CcEeCcCCCCCEeeeeeC
Confidence 999 55 566666888753 68999996643 445599999999999984
No 20
>cd03594 CLECT_REG-1_like C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2). CLECT_REG-1_like: C-type lectin-like domain (CTLD) of the type found in Human REG-1 (lithostathine), REG-4, and avian eggshell-specific proteins: ansocalcin, structhiocalcin-1(SCA-1), and -2(SCA-2). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. REG-1 is a proliferating factor which participates in various kinds of tissue regeneration including pancreatic beta-cell regeneration, regeneration of intestinal mucosa, regeneration of motor neurons, and perhaps in tissue regeneration of damaged heart. REG-1 may play a role on the pathophysiology of Alzheimer's disease and in the development of gastric cancers. Its expression is correlated with reduced survival from early-stage colorectal cancer. REG-1 also binds and aggregates
Probab=99.89 E-value=8.3e-23 Score=181.09 Aligned_cols=126 Identities=22% Similarity=0.367 Sum_probs=107.4
Q ss_pred CchhhhccCCeEEEEecCCcCCHHHHHhHcccC--CCeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCCCCCeEE
Q psy14896 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNLWVN 105 (813)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~--~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~~~W 105 (813)
||.||..|+++||+|+... ++|.+|+++|+.+ ||+||+|++++|++||..++.... ....+||||.+...++.|.|
T Consensus 1 Cp~gw~~~~~~Cy~~~~~~-~tw~~A~~~C~~~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~WiGl~~~~~~~~~~W 79 (129)
T cd03594 1 CPKGWLPYKGNCYGYFRQP-LSWSDAELFCQKYGPGAHLASIHSPAEAAAIASLISSYQKAYQPVWIGLHDPQQSRGWEW 79 (129)
T ss_pred CCCCCEecCCEeeeEeccC-cCHHHHHHHHHhcCCCceEcccCCHHHHHHHHHHHHhhccCCccEEEeeccCCCCCceEe
Confidence 9999999999999999995 9999999999999 499999999999999999886543 34579999999888889999
Q ss_pred cCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896 106 EDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (813)
Q Consensus 106 ~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~ 159 (813)
.||+++.| .+|..++| ....++|+.|....+ .+.|.+..|.....|+|+.
T Consensus 80 ~dg~~~~~-~~W~~~~p-~~~~~~Cv~~~~~~~--~~~W~~~~C~~~~~fICe~ 129 (129)
T cd03594 80 SDGSKLDY-RSWDRNPP-YARGGYCAELSRSTG--FLKWNDANCEERNPFICKY 129 (129)
T ss_pred CCCCccee-cccCCCCC-CCCCCCceEEEecCC--CCeEECCCCCCCceeeeeC
Confidence 99999987 56666688 334689999976533 2456699999999999973
No 21
>cd03593 CLECT_NK_receptors_like C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs). CLECT_NK_receptors_like: C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs), including proteins similar to oxidized low density lipoprotein (OxLDL) receptor (LOX-1), CD94, CD69, NKG2-A and -D, osteoclast inhibitory lectin (OCIL), dendritic cell-associated C-type lectin-1 (dectin-1), human myeloid inhibitory C-type lectin-like receptor (MICL), mast cell-associated functional antigen (MAFA), killer cell lectin-like receptors: subfamily F, member 1 (KLRF1) and subfamily B, member 1 (KLRB1), and lys49 receptors. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. NKRs are variously associated with activation or inhibition of natural killer (NK) cells. Activating NKRs stimulate cytolysis by NK cells of virally infected or transformed cells; inhibitory NKRs block cytolysis up
Probab=99.88 E-value=2.8e-22 Score=173.99 Aligned_cols=116 Identities=28% Similarity=0.482 Sum_probs=101.9
Q ss_pred CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCC
Q psy14896 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDG 108 (813)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dg 108 (813)
||.||..|+++||+|+... ++|.+|+..|+.+||+||+|+|++|++||.+++ ....+|||+.+...++.|.|.||
T Consensus 1 Cp~gw~~~~~~Cy~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~----~~~~~WiGl~~~~~~~~~~W~dg 75 (116)
T cd03593 1 CPKDWICYGNKCYYFSMEK-KTWNESKEACSSKNSSLLKIDDEEELEFLQSQI----GSSSYWIGLSREKSEKPWKWIDG 75 (116)
T ss_pred CCCcCEEeCCEEEEEEcCC-CCHHHHHHHHHhCCCcEEEECCHHHHHHHHHhc----CCCceEEEEeecCCCCCeEccCC
Confidence 9999999999999999995 999999999999999999999999999999987 34578999999988999999999
Q ss_pred CCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896 109 TNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (813)
Q Consensus 109 s~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~ 159 (813)
+++. +|+..+|++ ..++|+.|... .|.+..|.....|+|++
T Consensus 76 ~~~~---~~~~~~~~~-~~~~C~~~~~~------~w~~~~C~~~~~~IC~k 116 (116)
T cd03593 76 SPLN---NLFNIRGST-KSGNCAYLSST------GIYSEDCSTKKRWICEK 116 (116)
T ss_pred Cccc---ccccccCCC-CCCCceEEcCC------cEEcccCCcCceeeeeC
Confidence 9987 577776655 56899988543 34599999999999974
No 22
>cd03596 CLECT_tetranectin_like C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF). CLECT_tetranectin_like: C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TN binds to plasminogen and stimulates activation of plasminogen, playing a key role in the regulation of proteolytic processes. The TN CTLD binds two calcium ions. Its calcium free form binds to various kringle-like protein ligands. Two residues involved in the coordination of calcium are critical for the binding of TN to the fourth kringle (K4) domain of plasminogen (Plg K4). TN binds the kringle 1-4 form of angiostatin (AST K1-4). AST K1-4 is a fragment of Plg, commonly found in cancer tissues. TN inhibits the bin
Probab=99.87 E-value=3.5e-22 Score=176.08 Aligned_cols=124 Identities=17% Similarity=0.221 Sum_probs=105.1
Q ss_pred CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcC-CCCceEEEEeccCCCCCeEEcC
Q psy14896 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD-PQRRKWYFGGTQQSPNLWVNED 107 (813)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~-~~~~~w~g~~~~~~~~~~~W~d 107 (813)
||.||.. +++||+|+... ++|.+|++.|+.+||+||+|+|.+|++||.+++.... ....+||||++...++.|.|.|
T Consensus 1 c~~g~~~-~~~CY~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~~~~~~~~~WiGl~~~~~~~~w~w~d 78 (129)
T cd03596 1 CLKGTKI-HKKCYLVSEET-KHYHEASEDCIARGGTLATPRDSDENDALRDYVKASVPGNWEVWLGINDMVAEGKWVDVN 78 (129)
T ss_pred CCCCcEE-CCEEEEEeccc-CCHHHHHHHHHhcCCeEecCCCHHHHHHHHHHHHhccCCCCcEEEeccccCccCeEEeCC
Confidence 9999855 78999999995 9999999999999999999999999999998875432 3358999999999999999999
Q ss_pred CCCCCccccccC---CCCCCcccCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896 108 GTNLNELDAAFL---PEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICE 158 (813)
Q Consensus 108 gs~~~~~~~~~~---~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~ 158 (813)
|+++.| .+|.. ++|++...++|+.|.... ...|.+..|.....|+|+
T Consensus 79 G~~~~~-~~W~~~~~~~p~~~~~~~Cv~l~~~~---~~~W~d~~C~~~~~fICe 128 (129)
T cd03596 79 GSPISY-FNWEREITAQPDGGKRENCVALSSSA---QGKWFDEDCRREKPYVCE 128 (129)
T ss_pred CCCccc-cccCCCCCCCCCCCCCCCCEEEccCC---CCcCcCccCCCCCceecc
Confidence 999997 67776 578765568999986542 234559999999999997
No 23
>PHA02953 IEV and EEV membrane glycoprotein; Provisional
Probab=99.87 E-value=1e-21 Score=175.81 Aligned_cols=119 Identities=13% Similarity=0.262 Sum_probs=94.9
Q ss_pred ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896 25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV 104 (813)
Q Consensus 25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~ 104 (813)
....||.||..|+++||+++... ++|.+|++.|+.+||+|++++ +|+.|+..+. ....+||||+| .++.|.
T Consensus 43 ~~~~CP~GW~~~~~~CYk~f~~~-~tW~~A~~~C~~~Gg~L~~~~--~e~~fv~~~~----~~~~~WIGL~d--~eg~W~ 113 (170)
T PHA02953 43 FPSACAKGWIPYDNYCYLDTNIQ-LSTYGAVYLCNKYRARLPKPN--FRHLKVLSLT----YGKDFWVSLKK--KNNRWL 113 (170)
T ss_pred ccCcCcccChhhCCEEEEEECCc-CCHHHHHHHHHhcCCCCCCCc--HHHHHHHHhc----cCCCEEEeEEC--CCCceE
Confidence 44679999999999999999995 999999999999999998877 6788887764 23468999998 678999
Q ss_pred EcCC-CCCCccccc-----cCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896 105 NEDG-TNLNELDAA-----FLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS 160 (813)
Q Consensus 105 W~dg-s~~~~~~~~-----~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~ 160 (813)
|.|| +.++| .+| |.++|++ ..++|+.+.. + . |.+..|.....|+|+..
T Consensus 114 w~Dggs~~~y-~~~~~~~~w~~~~~~-~~e~C~~~~~--~--~--W~d~~C~~~~~fICqk~ 167 (170)
T PHA02953 114 DINTNKTVDM-NKNTELKKIKSKTKN-DNEACYIYKS--G--E--LKETVCNSVNYIICVKR 167 (170)
T ss_pred eCCCCeeecc-ccccccccccCCCCC-CCCCceEEeC--C--e--EEeccCCCCcEEEEEEe
Confidence 9996 55554 332 4455543 5789987742 1 3 55999999999999884
No 24
>PHA03097 C-type lectin-like protein; Provisional
Probab=99.87 E-value=2.2e-21 Score=172.77 Aligned_cols=118 Identities=18% Similarity=0.284 Sum_probs=96.0
Q ss_pred ccccccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCC
Q psy14896 21 TIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSP 100 (813)
Q Consensus 21 ~~~~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~ 100 (813)
..+.....||.||..|+++||+|+.+. ++|.+|+.+|+++||+||+|++++|++||.+++ ....+||||++...
T Consensus 38 ~~~~~~~~CP~gW~~~~~~CY~~s~~~-~sW~~A~~~C~~~g~~La~I~~~~E~~fi~~~~----~~~~~WIGL~d~~~- 111 (157)
T PHA03097 38 PGDRSGLNCRSGWVGYNNKCYTFSENI-TNKHLAIERCADMDGILTLIDDQKEVLFVSRYK----GGQDLWIGIEKKKG- 111 (157)
T ss_pred CCCCcCCCCCCCceeeCCEEEEEecCC-CcHHHHHHHHHhCCCEEeeeCCHHHHHHHHHhc----CCCCEEEeeecCCC-
Confidence 344455679999999999999999995 999999999999999999999999999999875 33479999998643
Q ss_pred CCeEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896 101 NLWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS 160 (813)
Q Consensus 101 ~~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~ 160 (813)
|.||+.+.. +|+.. ...++|+.+... . |.+..|.....|+|+..
T Consensus 112 ----W~dgs~~~~--~~~~~----~~~e~Cv~i~~~----~--w~d~~C~~~~~~ICek~ 155 (157)
T PHA03097 112 ----DDDDREVLD--KVVKP----PKSGKCAYLKDK----T--IISSNCNATKGWICFDR 155 (157)
T ss_pred ----ccCCCcccc--cccCC----CCCCCEEEEECC----c--EEeCCCCCCeeEEEeec
Confidence 999997653 44332 135789877442 2 55999999999999985
No 25
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.85 E-value=9.1e-21 Score=180.85 Aligned_cols=156 Identities=19% Similarity=0.322 Sum_probs=114.1
Q ss_pred CCceeccCCCceEEeCCCCCCC-----------ccEEEEccCCCCCcccC-CCe--------EE-EeeCccEEEEeeccc
Q psy14896 576 APEIGNQNWGKAMFCDPPTNYP-----------GVNYYWARDYFPNFVEE-DKR--------VF-VSYDGALYFSALEQI 634 (813)
Q Consensus 576 ~~~~~~~g~~~~l~C~~~~~~p-----------~~~v~W~k~~~~~~~~~-~~~--------~~-~~~~~~L~i~~~~~~ 634 (813)
.+..+.+|+++.|.|.+ .+.| .+.|.|+|++....... +.+ .. ...+++|.|.+++.+
T Consensus 30 ~~~~v~eGe~v~L~C~~-~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTG-KHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred ceEEecCCCCEEEEccc-cccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 34567889999999998 4444 35899999875321111 111 00 123568999999999
Q ss_pred CCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEec-----CCCCCeEEEEeC
Q psy14896 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-----GYPVPSYNWTRR 709 (813)
Q Consensus 635 d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~-----g~P~p~i~W~k~ 709 (813)
|+|.|+|+|.|..|.. ...+.|.|..++ .+..+.+|++++|.|.+. |.|.|.|+|+||
T Consensus 109 DsG~Y~C~a~N~~~~~---~~~i~L~V~~~~--------------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKn 171 (227)
T PHA02826 109 DEGIYICTISSGNICE---ESTIRLTFDSGT--------------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKN 171 (227)
T ss_pred HCEEEEEEEEECCcce---EEEEEEEEecCC--------------ccceEecCCCEEEEeeCCCCccccCCCceEEEEEC
Confidence 9999999999977543 334566664321 124567899999999986 346789999999
Q ss_pred CcccCCCceee--ecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896 710 GSPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRASNDRSA 749 (813)
Q Consensus 710 g~~l~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 749 (813)
|++|..+.++. ..+++|.|.+++.+|+|.|+|+|...++.
T Consensus 172 g~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 172 GNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred CEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence 99997665543 34568999999999999999999987643
No 26
>cd03598 CLECT_EMBP_like C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH). CLECT_EMBP_like: C-type lectin-like domain (CTLD) of the type found in the human proteins, eosinophil major basic protein (EMBP) and prepro major basic protein homolog (MBPH). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Eosinophils and basophils carry out various functions in allergic, parasitic, and inflammatory diseases. EMBP is stored in eosinophil crystalloid granules and is released upon degranulation. EMBP is also expressed in basophils. The proform of EMBP is expressed in placental X cells and breast tissue and increases significantly during human pregnancy. EMBP has cytotoxic properties and damages bacteria and mammalian cells, in vitro, as well as, helminth parasites. EMBP deposition has been observed in the inflamed tissue of all
Probab=99.83 E-value=4.7e-20 Score=159.17 Aligned_cols=113 Identities=23% Similarity=0.310 Sum_probs=95.4
Q ss_pred CeEEEEecCCcCCHHHHHhHcccC-CCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEecc--CCCCCeEEcCCCCCCcc
Q psy14896 38 DSCYRFVKSPLKTRNDAKLNCKSL-DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQ--QSPNLWVNEDGTNLNEL 114 (813)
Q Consensus 38 ~~Cy~~~~~~~~~~~~a~~~C~~~-~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~--~~~~~~~W~dgs~~~~~ 114 (813)
++||+|+..+ ++|.+|++.|+.+ ||+||+|+|++|++||.+++... ....+||||.+. ..++.|.|.||+++.|
T Consensus 1 ~~Cy~~~~~~-~t~~~A~~~C~~~~g~~La~i~s~~e~~~l~~~~~~~-~~~~~WiGl~~~~~~~~~~~~W~dg~~~~y- 77 (117)
T cd03598 1 GRCYRFVKSP-RTFRDAQVICRRCYRGNLASIHSFAFNYRVQRLVSTL-NQAQVWIGGIITGKGRCRRFSWVDGSVWNY- 77 (117)
T ss_pred CceEEEecCC-CCHHHHHHHhhcCCCceEeeecChhHhHHHHHHHhCC-CCCCEEEeeEcCCCCcCCeeEeCCCCccCc-
Confidence 5799999995 9999999999994 99999999999999999988543 345799999987 5678999999999998
Q ss_pred ccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896 115 DAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICE 158 (813)
Q Consensus 115 ~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~ 158 (813)
.+|..++|++ ..++|+.|....+ .| .+..|.....|+|+
T Consensus 78 ~~W~~g~p~~-~~~~Cv~~~~~~g--~W--~~~~C~~~~~fiC~ 116 (117)
T cd03598 78 AYWAPGQPGN-RRGHCVELCTRGG--HW--RRAHCKLRRPFICS 116 (117)
T ss_pred CCCCCCCCCC-CCCCcEEEeCCCC--eE--CCCcCCCCceeeec
Confidence 5766668887 5678999865422 44 49999999999997
No 27
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.81 E-value=2.8e-19 Score=170.65 Aligned_cols=162 Identities=17% Similarity=0.240 Sum_probs=112.9
Q ss_pred ceeecCCCccccccEEEEeeeccCC-----------CCeEEEeecccccc---cccccccccCCCccEEeeCCeEEEcCC
Q psy14896 198 DVVFDLSKRSILNDITLSCYAGGYP-----------NPSYEWFKEDYVQD---RLVANLIDPLSDKRFTLSGGNLIINDP 263 (813)
Q Consensus 198 ~~~v~~g~~~~g~~v~l~C~~~g~P-----------~p~v~W~k~g~~l~---~~~~~~~~~~~~~~~~~~~~~l~i~~~ 263 (813)
...+.+| ++|.|.|.+.+.| .+.|.|+|++...- ....+.+.+....++...+++|.|.+.
T Consensus 31 ~~~v~eG-----e~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v 105 (227)
T PHA02826 31 PVYAKFG-----DPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNV 105 (227)
T ss_pred eEEecCC-----CCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCC
Confidence 3455555 7799999997654 34899999985310 000000011111222233678999886
Q ss_pred ccccCCeeEEEEeecCceeeEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCC----CCcceEEEeeccccccc
Q psy14896 264 RQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN----YPGVNYYWARDYFPNFV 339 (813)
Q Consensus 264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~----~p~~~v~W~k~~~~~~~ 339 (813)
+.+|+|.|+|+|+|..+.. ...+.|.|... ..+..+.+|+.+.|.|.+..+ .|.|+++|+|||+++.
T Consensus 106 -~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~- 176 (227)
T PHA02826 106 -INIDEGIYICTISSGNICE-ESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL- 176 (227)
T ss_pred -ChHHCEEEEEEEEECCcce-EEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC-
Confidence 8999999999999988765 55666776321 134456789999999987543 4679999999999853
Q ss_pred cCCccEEEccC-ccEEEeeeeecCCeeeEEEEeeec
Q psy14896 340 EEDKRVFVSYD-GALYFSALEQIDAGNYSCNVQSKV 374 (813)
Q Consensus 340 ~~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~n~~ 374 (813)
...++.+..+ ++|.|.+++.+|+|.|+|+|....
T Consensus 177 -~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 177 -YTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred -CCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 4446665544 489999999999999999999864
No 28
>PHA02867 C-type lectin protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=159.53 Aligned_cols=114 Identities=18% Similarity=0.320 Sum_probs=91.1
Q ss_pred ccccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCC
Q psy14896 23 DELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNL 102 (813)
Q Consensus 23 ~~~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~ 102 (813)
...+..||.||..|+++||+|+.+. ++|.+|+..|..+||+||+|++++|++||.++. ...+||||++...
T Consensus 43 ~~~~~~CP~gWi~~~~~CY~fs~~~-~tW~~A~~~C~~~ga~La~I~s~eE~~Fl~~~~-----~~~~WIGLs~~~~--- 113 (167)
T PHA02867 43 PYFSKVCPDEWIGYNSKCYYFTINE-TNWNDSKKLCDVMDSSLIRFDNIETLNFVSRYG-----KGSYWIDINQNRK--- 113 (167)
T ss_pred CCcCCCCCCCCEEECCEEEEEeccc-cCHHHHHHHHhhCCCEECCcCCHHHHHHHHHcC-----CCCEEEEEEeCCC---
Confidence 3456789999999999999999995 999999999999999999999999999998763 3479999998753
Q ss_pred eEEcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896 103 WVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI 161 (813)
Q Consensus 103 ~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~ 161 (813)
+.|.+++.+ + . ..+.+.|+.+... .+.+..|.....|+|++..
T Consensus 114 ~~~~~~s~~------~-~---~~~~~~Ca~i~~~------~i~s~~C~~~~~wIC~K~~ 156 (167)
T PHA02867 114 IPGINFSLY------Y-E---QGVNDICLLFDTS------NIIEMSCIFHERTICVKED 156 (167)
T ss_pred CCCccCcee------e-e---cCCCCcEEEEeCC------eEEeecccCCcEEEEEccC
Confidence 455555433 1 1 1235788876443 3449999999999999964
No 29
>cd03591 CLECT_collectin_like C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1). CLECT_collectin_like: C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CTLDs of these collectins bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, or apoptotic cells) and mediate functions associated with killing and phagocytosis. MBPs recognize high mannose oligosaccharides in a calcium dependent manner, bind to a broad range of pathogens, and trigger cell killing by activating the complement pathway. MBP also acts directly as an opsonin. SP-A and SP-D in addition to functioning as host defense components, a
Probab=99.81 E-value=1.1e-19 Score=156.12 Aligned_cols=112 Identities=19% Similarity=0.140 Sum_probs=96.6
Q ss_pred CeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCccccc
Q psy14896 38 DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAA 117 (813)
Q Consensus 38 ~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~~~ 117 (813)
.+||+++.+. ++|.+|+.+|+.+||+||+|+|.+|++||.+++.. ....+||||++...++.|.|.||+++.| .+|
T Consensus 1 ~k~y~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~~--~~~~~WiGl~~~~~~~~~~w~dg~~~~y-~~W 76 (114)
T cd03591 1 EKIFVTNGEE-KNFDDAQKLCSEAGGTLAMPRNAAENAAIASYVKK--GNTYAFIGITDLETEGQFVYLDGGPLTY-TNW 76 (114)
T ss_pred CcEEEeCCce-eCHHHHHHHHhhcCCEEecCCCHHHHHHHHHHHhc--CCccEEEecccCCcCCcEEeCCCCCccc-CCc
Confidence 3799999995 99999999999999999999999999999999865 3457999999998999999999999987 677
Q ss_pred cCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896 118 FLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICE 158 (813)
Q Consensus 118 ~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~ 158 (813)
..++|++.+ .++|+.|.. . ..|.+..|.....|+|+
T Consensus 77 ~~~ep~~~~~~~~Cv~~~~-~----~~W~~~~C~~~~~fICe 113 (114)
T cd03591 77 KPGEPNNAGGGEDCVEMYT-S----GKWNDVACNLTRLFVCE 113 (114)
T ss_pred CCCCCCCCCCCCCeEEECC-C----CcCcCccCCCCeeEEee
Confidence 777888754 578999862 2 23459999999999997
No 30
>cd03603 CLECT_VCBS A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CLECT_VCBS: A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Bacterial CTLDs within this group are functionally uncharacterized. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surface
Probab=99.81 E-value=1.7e-19 Score=155.37 Aligned_cols=114 Identities=19% Similarity=0.293 Sum_probs=95.1
Q ss_pred eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCcccccc
Q psy14896 39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAF 118 (813)
Q Consensus 39 ~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~~~~ 118 (813)
|||+|+... ++|.+|+..|+.+||+||+|+|++|++||..++. ....+||||.+...++.|.|.||+++.| .+|.
T Consensus 1 ~~Y~~~~~~-~sw~~A~~~C~~~g~~La~I~s~~E~~fv~~~~~---~~~~~WiG~~~~~~~~~w~W~dg~~~~~-~~W~ 75 (118)
T cd03603 1 HFYKFVDGG-MTWEAAQTLAESLGGHLVTINSAEENDWLLSNFG---GYGASWIGASDAATEGTWKWSDGEESTY-TNWG 75 (118)
T ss_pred CeEEEeCCC-cCHHHHHHHHHHcCCEEcccCCHHHHHHHHHHhc---cCCCEEEeeecCCCCCceEeCCCCcCCC-CCcC
Confidence 699999995 9999999999999999999999999999999985 2457899999988899999999999987 6777
Q ss_pred CCCC-CCc-ccCCeEEEEeeccccccceeeccCC-Cceeeeee
Q psy14896 119 LPEP-ADN-VQRDYLAYSFSQSLKRWGFERVTGM-EPLLFICE 158 (813)
Q Consensus 119 ~~~p-~~~-~~~~c~~~~~~~~~~~l~i~~~~~~-d~~~y~C~ 158 (813)
.++| ++. ..++|+.|....+. ...|.+..|. ....|+|+
T Consensus 76 ~~eP~~~~~~~~~Cv~~~~~~~~-~~~W~d~~C~~~~~~~iCe 117 (118)
T cd03603 76 SGEPHNNGGGNEDYAAINHFPGI-SGKWNDLANSYNTLGYVIE 117 (118)
T ss_pred CCCCCCCCCCCcCeEEeecCCCC-CCcCccCCCCccccceEEe
Confidence 7788 553 35789988542101 2345599999 99999997
No 31
>smart00034 CLECT C-type lectin (CTL) or carbohydrate-recognition domain (CRD). Many of these domains function as calcium-dependent carbohydrate binding modules.
Probab=99.80 E-value=2.7e-19 Score=158.66 Aligned_cols=124 Identities=27% Similarity=0.455 Sum_probs=104.3
Q ss_pred CchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhc-CCCCceEEEEeccCCCCCeEEcC
Q psy14896 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ-DPQRRKWYFGGTQQSPNLWVNED 107 (813)
Q Consensus 29 Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~-~~~~~~w~g~~~~~~~~~~~W~d 107 (813)
||.||..|+++||+++... ++|.+|+.+|+.++|+||+|++++|++||.+++... .....+||||.+....+.|.|.|
T Consensus 1 Cp~~w~~~~~~Cy~~~~~~-~~~~~A~~~C~~~~~~La~i~~~~e~~~i~~~~~~~~~~~~~~WiG~~~~~~~~~~~W~d 79 (126)
T smart00034 1 CPSGWISYGGKCYKFSTEK-KTWADAQAFCQSLGAHLASIHSEAENDFVASLLKNSGSNSDYYWIGLSDPDSNGSWQWSD 79 (126)
T ss_pred CCcchhhhCCEEEEEECCc-cCHHHHHHHHHhcCCEEcccCCHHHHHHHHHHHHhhcCCCCCEEEecCccCcCCCeEECC
Confidence 9999999999999999995 999999999999999999999999999999998543 13458999999877788999999
Q ss_pred CCC-CCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeee
Q psy14896 108 GTN-LNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICE 158 (813)
Q Consensus 108 gs~-~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~ 158 (813)
|++ ..+ .+|..+ ++......|+.|..... ..|.+..|.....|+|+
T Consensus 80 g~~~~~~-~~w~~~-~~~~~~~~C~~~~~~~~---~~w~~~~C~~~~~~ICe 126 (126)
T smart00034 80 GSGPVNY-SNWAPG-EPNGGSGDCVVLSTSGG---GKWNDVSCTSKLPFVCE 126 (126)
T ss_pred CCCCCCc-cccCCC-CCCCCCCCCEEEecCCC---CcccCCCCCCCcccccC
Confidence 999 555 565555 44455789999876543 34559999999999995
No 32
>cd03592 CLECT_selectins_like C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CLECT_selectins_like: C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. P- E- and L-sels are cell adhesion receptors that mediate the initial attachment, tethering, and rolling of lymphocytes on inflamed vascular walls enabling subsequent lymphocyte adhesion and transmigration. L- sel is expressed constitutively on most leukocytes. P-sel is stored in the Weibel-Palade bodies of endothelial cells and in the alpha granules of platlets. E- sels are present on endothelial cells. Following platelet and/or endothelial cell activation P- sel is rapidly translocated to the cell surface and E-sel exp
Probab=99.78 E-value=6.7e-19 Score=151.85 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=95.6
Q ss_pred EEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCccccccCC
Q psy14896 41 YRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLP 120 (813)
Q Consensus 41 y~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~~~~~~ 120 (813)
|+|+.+. ++|.+|+.+|+.+||+||+|+|++|++||..++... ....+||||++...++.|.|.||+++.| .+|..+
T Consensus 3 Y~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~i~~~~~~~-~~~~~WiG~~~~~~~~~W~~~dg~~~~y-~~W~~g 79 (115)
T cd03592 3 YHYSTEK-MTFNEAVKYCKSRGTDLVAIQNAEENALLNGFALKY-NLGYYWIDGNDINNEGTWVDTDKKELEY-KNWAPG 79 (115)
T ss_pred EEEcCCc-cCHHHHHHHHHHcCCeEeecCCHHHHHHHHHHHHhc-CCCCEEEeCccCCccCeEEeCCCCcccc-cccCCC
Confidence 8899985 999999999999999999999999999999987443 2347999999988889999999999887 677777
Q ss_pred CCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896 121 EPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (813)
Q Consensus 121 ~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~ 159 (813)
+|++...++|+.|..... ..|.+..|.....|+|++
T Consensus 80 eP~~~~~~~Cv~~~~~~~---g~W~d~~C~~~~~fICe~ 115 (115)
T cd03592 80 EPNNGRNENCLEIYIKDN---GKWNDEPCSKKKSAICYT 115 (115)
T ss_pred CCCCCCCCCceEEccCCC---CCCcCcCCCCCccceeCC
Confidence 998766789999875422 234599999999999974
No 33
>cd03601 CLECT_TC14_like C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 from the budding tunicate Polyandrocarpa misakiensis and PfG6 from the Acorn worm. CLECT_TC14_like: C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 from the budding tunicate Polyandrocarpa misakiensis and PfG6 from the Acorn worm. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TC14 is homodimeric. The CTLD of TC14 binds D-galactose and D-fucose. TC14 is expressed constitutively by multipotent epithelial and mesenchymal cells and plays in role during budding, in inducing the aggregation of undifferentiated mesenchymal cells to give rise to epithelial forming tissue. TC14-2 and TC14-3 shows calcium-dependent galactose binding activity. TC14-3 is a cytostatic factor which blocks cell growth and dedifferentiation of the atrial epithelium during asexual reproducti
Probab=99.78 E-value=1.3e-18 Score=150.32 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=87.3
Q ss_pred EEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhc--CCCCceEEEEecc-CCCCCeEEcCCCCC--Cccc
Q psy14896 41 YRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ--DPQRRKWYFGGTQ-QSPNLWVNEDGTNL--NELD 115 (813)
Q Consensus 41 y~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~--~~~~~~w~g~~~~-~~~~~~~W~dgs~~--~~~~ 115 (813)
|+|+.+ .++|.+|+.+|+.+||+||+|+|++| ++.+.+... .....+||||++. ..++.|.|+||+++ .| .
T Consensus 3 ~~~~~~-~~~w~~A~~~C~~~G~~La~i~s~~e--~~~~~i~~~~~~~~~~~WIGl~d~~~~~g~~~W~dG~~~~~~y-~ 78 (119)
T cd03601 3 ILCSDE-TMNYAKAGAFCRSRGMRLASLAMRDS--EMRDAILAFTLVKGHGYWVGADNLQDGEYDFLWNDGVSLPTDS-D 78 (119)
T ss_pred EEEcCC-cCCHHHHHHHHHhcCCEEeeecCHHH--HHHHHHHhccccCCccEEEEeccCCCCCCCeEeCCCCCcCCCC-C
Confidence 788888 49999999999999999999999988 222333221 1234699999998 88999999999998 45 5
Q ss_pred cccCCCCCCcc-cCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896 116 AAFLPEPADNV-QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (813)
Q Consensus 116 ~~~~~~p~~~~-~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~ 159 (813)
+|..++|++.. .++|+.|.... ..|.+..|.....|+|++
T Consensus 79 ~W~~geP~~~~~~e~Cv~~~~~~----~~W~d~~C~~~~~fICek 119 (119)
T cd03601 79 LWAPNEPSNPQSRQLCVQLWSKY----NLLDDEYCGRAKRVICEK 119 (119)
T ss_pred ccCCCcCcCcCCCcCCeEEeCCC----CCEeCccCCCCceeeecC
Confidence 77777998754 57899986542 245599999999999974
No 34
>cd03595 CLECT_chondrolectin_like C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin. CLECT_chondrolectin_like: C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CHODL is predominantly expressed in muscle cells and is associated with T-cell maturation. Various alternatively spliced isoforms have been of CHODL have been identified. The transmembrane form of CHODL is localized in the ER-Golgi apparatus. Layilin is widely expressed in different cell types. The extracellular CTLD of layilin binds hyaluronan (HA), a major constituent of the extracellular matrix (ECM). The cytoplasmic tail of layilin binds various members of the band 4.1/ERM superfamily (talin, radixin, and merlin). The ERM proteins are cytoskeleton-membrane l
Probab=99.76 E-value=3.3e-18 Score=153.88 Aligned_cols=120 Identities=14% Similarity=0.184 Sum_probs=95.7
Q ss_pred cCCeEEEEe-----cCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhc-CCCCceEEEEeccCCC--------C
Q psy14896 36 YRDSCYRFV-----KSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ-DPQRRKWYFGGTQQSP--------N 101 (813)
Q Consensus 36 ~~~~Cy~~~-----~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~-~~~~~~w~g~~~~~~~--------~ 101 (813)
|+++||+++ .. +++|.+|+..|+.+||+||+|+|++|++||..+++.. .....+||||.+...+ +
T Consensus 8 ~~~~Cy~~~~~~~~~~-~~tw~~A~~~C~~~g~~LasI~s~~E~~~i~~~i~~~~~~~~~~WIGl~~~~~~~~~~~~~~~ 86 (149)
T cd03595 8 TEKPCYKIAYFQDSRR-RLNFEEARQACREDGGELLSIESENEQKLIERFIQTLRASDGDFWIGLRRSSQYNVTSSACSS 86 (149)
T ss_pred CCCccEEEEEEecccc-ccCHHHHHHHHHHcCCEECccCCHHHHHHHHHHHHhhcCCCCcEEEEeECCCCccccccccCC
Confidence 558999964 55 5999999999999999999999999999999888543 2234799999987643 4
Q ss_pred CeEEcCCCCCCccccccCCCCCCcccCCeEEEEeecc-------ccccceeeccCCCceeeeee
Q psy14896 102 LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQS-------LKRWGFERVTGMEPLLFICE 158 (813)
Q Consensus 102 ~~~W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~-------~~~l~i~~~~~~d~~~y~C~ 158 (813)
.|.|.||+++.| .+|..++|++ +.++|+.|..... .....|.+..|.....|+|+
T Consensus 87 ~~~W~dG~~~~y-~~W~~~eP~~-~~~~Cv~l~~~~~~~~~~~~~~~~~W~d~~C~~~~~fICe 148 (149)
T cd03595 87 LYYWLDGSISTF-RNWYVDEPSC-GSEVCVVMYHQPSAPAGQGGPYLFQWNDDNCNMKNNFICK 148 (149)
T ss_pred ccEEcCCCccCc-cCCCCCCCCC-cccCCEEEEecCCCCcCcCcccCCCccCCCCCCCcccccC
Confidence 699999999998 6777778875 5679999965321 11235669999999999997
No 35
>cd03600 CLECT_thrombomodulin_like C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CLECT_thrombomodulin_like: C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In these thrombomodulin-like proteins the residues involved in coordinating Ca2+ in the classical MBP-A CTLD are not conserved. TM exerts anti-fibrinolytic and anti-inflammatory activity. TM also regulates blood coagulation in the anticoagulant protein C pathway. In this pathway, the procoagulant properties of thrombin (T) are lost when it binds TM. TM also plays a key role in tumor biology. It is expressed on endothelial cells and on several type of tumor cell including squamous cell carcinoma. Loss of TM expression correlates with advanced stage and poor prognosis. Loss of function of TM func
Probab=99.75 E-value=1.4e-17 Score=149.01 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=95.1
Q ss_pred cCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcC-----CCCceEEEEeccC--------CCCC
Q psy14896 36 YRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD-----PQRRKWYFGGTQQ--------SPNL 102 (813)
Q Consensus 36 ~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~-----~~~~~w~g~~~~~--------~~~~ 102 (813)
.+++||+++... ++|.+|+.+|+.+||+||+|+|.+|++||..++.... ....+||||.+.. .++.
T Consensus 2 ~~~~Cy~~~~~~-~sw~~A~~~C~~~gg~La~i~s~~E~~~v~~~l~~~~~~~~~~~~~~WIGl~~~~~~~~~~~~~~~~ 80 (141)
T cd03600 2 VSDACYTLHPQK-LTFLEAQRSCIELGGNLATVRSGEEADVVSLLLAAGPGRHGRGSLRLWIGLQREPRQCSDPSLPLRG 80 (141)
T ss_pred CCCceEEEeCCc-cCHHHHHHHHHhhCCEeeecCCHHHHHHHHHHHhhccccccCCCccEEEeEecCcccCccccccCCc
Confidence 368999999994 9999999999999999999999999999999885532 2457999999843 2467
Q ss_pred eEEcCCCC-CCccccccCCCCCCc-ccCCeEEEEeecc-ccccceeeccCCCce-eeeeeec
Q psy14896 103 WVNEDGTN-LNELDAAFLPEPADN-VQRDYLAYSFSQS-LKRWGFERVTGMEPL-LFICEAS 160 (813)
Q Consensus 103 ~~W~dgs~-~~~~~~~~~~~p~~~-~~~~c~~~~~~~~-~~~l~i~~~~~~d~~-~y~C~~~ 160 (813)
|.|.||+. .+| .+|..+ |++. ..++|+.|....+ ...+.|.+..|.... .|+|+..
T Consensus 81 f~W~d~~~~~~y-~~W~~~-p~n~~~~~~Cv~l~~~~~~~~~~~W~d~~C~~~~~~fIC~~~ 140 (141)
T cd03600 81 FSWVTGDQDTDF-SNWLQE-PAGTCTSPRCVALSAAGSTPDNLKWKDGPCSARADGYLCKFS 140 (141)
T ss_pred cEECCCCCCCCc-cccccC-CCCCCCCCccEEEEccCCCCCCCccccCCcCCCCCCeEEeee
Confidence 99999865 455 566555 6654 4689999977542 113556699999874 7999973
No 36
>cd03602 CLECT_1 C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CLECT_1: C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surfaces to form dimers, trimers, or tetramers from which ligand-binding sites project in differe
Probab=99.74 E-value=6.6e-18 Score=143.77 Aligned_cols=108 Identities=20% Similarity=0.253 Sum_probs=90.3
Q ss_pred eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCcccccc
Q psy14896 39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAF 118 (813)
Q Consensus 39 ~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~~~~ 118 (813)
.||+|+... ++|.+|+.+|+.+||+||+|+|++|++||..++. .....+||||.+. ++.|.|+||+++.| .+|.
T Consensus 1 ~~y~~~~~~-~~w~~A~~~C~~~g~~La~i~s~~e~~~l~~~~~--~~~~~~WiGl~~~--~~~~~W~dg~~~~~-~~w~ 74 (108)
T cd03602 1 RTFYLVNES-KTWSEAQQYCRENYTDLATVQNQEDNALLSNLSR--VSNSAAWIGLYRD--VDSWRWSDGSESSF-RNWN 74 (108)
T ss_pred CceEEeccc-cCHHHHHHHHHHHCCccCeecCHHHHHHHHHHHh--ccCCcEEEEEECC--CCceEEcCCCCCcc-CccC
Confidence 379999995 9999999999999999999999999999999885 2345799999987 77899999999887 5665
Q ss_pred CCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896 119 LPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (813)
Q Consensus 119 ~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~ 159 (813)
.++|.+ .++|+.|... + .|. +..|.....|+|+.
T Consensus 75 ~~~~~~--~~~C~~~~~~-~--~w~--~~~C~~~~~fIC~~ 108 (108)
T cd03602 75 TFQPFG--QGDCATMYSS-G--RWY--AALCSALKPFICYD 108 (108)
T ss_pred CCCCCC--CCCeeEECcC-C--eEC--cccCCCCcCEeccC
Confidence 557543 5899988653 2 455 99999999999973
No 37
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.73 E-value=1.8e-17 Score=136.69 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=76.2
Q ss_pred CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896 680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT 755 (813)
Q Consensus 680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 755 (813)
....+..|+.+.|.|.+.|.|+|.++|+|||.+|..+.++. ...+.|+|.++..+|+|.|+|.|.|.+|.+++++.
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~ 87 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN 87 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence 34678999999999999999999999999999997665442 23578999999999999999999999999999999
Q ss_pred EEEEcCCccc
Q psy14896 756 ISIQAEPNFT 765 (813)
Q Consensus 756 l~V~~~P~~~ 765 (813)
|.|.++|..+
T Consensus 88 l~V~~~P~pP 97 (98)
T cd05762 88 LTVVDKPDPP 97 (98)
T ss_pred EEEecCCCCC
Confidence 9999988643
No 38
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=7.5e-17 Score=130.40 Aligned_cols=79 Identities=32% Similarity=0.561 Sum_probs=71.8
Q ss_pred CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
+..+.+|+.+.|.|.+.|.|.|.|+|+|++.++....++...+..|.|.+++.+|+|.|+|.|.|.+|..+..+.|.|+
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 10 DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence 4667899999999999999999999999999987766665556789999999999999999999999999999999884
No 39
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.67 E-value=5e-16 Score=127.38 Aligned_cols=93 Identities=34% Similarity=0.673 Sum_probs=78.6
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (813)
+|.|..+|.++.+.+|. +|++++|.|.+.|+|.|.|+|+|||..+. ...+.++.+.+++|+|.+.+..+|
T Consensus 1 ~P~f~~~P~~~~~~~~~--~g~~v~l~C~a~g~P~p~i~W~~~g~~l~--------~~~~~~~~~~~g~L~I~~~~~~~D 70 (94)
T cd05850 1 GPVFEEQPSSLLFPEGS--PEEKVTLGCRARASPPATYRWKMNGTEIK--------FAPESRYTLVAGNLVINNPQKARD 70 (94)
T ss_pred CCeeEECCCCEEecCCC--CCCeEEEEeEceeCCCCEEEEEECCEECc--------cCCCceEEEECCeEEEccCCccCc
Confidence 37899999999998874 47889999999999999999999998662 233456777789999988655799
Q ss_pred CeeEEEEeecCceeeEeeeeEEe
Q psy14896 269 RGSYHCKASNKFGSIISESVQLA 291 (813)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~ 291 (813)
+|.|+|.|+|..|...|..+.|+
T Consensus 71 ~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 71 AGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred CEEEEEEEEcCcCcEEEEEEEEe
Confidence 99999999999999988877775
No 40
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.66 E-value=7.6e-16 Score=126.20 Aligned_cols=93 Identities=41% Similarity=0.797 Sum_probs=75.7
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (813)
.|.|+.+|.++.+..+ .+|++++|.|.+.|.|.|+|+|+|||..|. ...+.++...+++|+|.+....+|
T Consensus 1 ~P~f~~~p~~~~~~~~--~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~--------~~~~~~~~~~~g~L~i~~~~~~~D 70 (94)
T cd05848 1 GPVFVQEPDDAIFPTD--SDEKKVILNCEARGNPVPTYRWLRNGTEID--------TESDYRYSLIDGNLIISNPSEVKD 70 (94)
T ss_pred CCeeEECCCcEEccCC--CCCCEEEEEEEeeecCCCEEEEEECCeECc--------cCCCceEEeeCCeEEEccCCccCc
Confidence 3789999999877655 356889999999999999999999998663 123345666788999988544799
Q ss_pred CeeEEEEeecCceeeEeeeeEEe
Q psy14896 269 RGSYHCKASNKFGSIISESVQLA 291 (813)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~ 291 (813)
+|.|+|.|+|..|.+.|..+.|.
T Consensus 71 ~G~Y~C~A~N~~G~~~S~~~~l~ 93 (94)
T cd05848 71 SGRYQCLATNSIGSILSREALLQ 93 (94)
T ss_pred CEEEEEEEEcCCCeEEeccEEEe
Confidence 99999999999999988777664
No 41
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.66 E-value=4.3e-16 Score=120.34 Aligned_cols=72 Identities=29% Similarity=0.523 Sum_probs=65.2
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee-cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN-FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
|+++.|.|.+.|.|.|.|+|+|++..+..+.++.. .+++|.|.+++.+|+|.|+|.|.|.+|+++.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 78999999999999999999999998877666543 4578999999999999999999999999999999875
No 42
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.66 E-value=9.3e-16 Score=124.96 Aligned_cols=92 Identities=35% Similarity=0.739 Sum_probs=75.8
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (813)
+|.|+.+|.+..+.++. .|..+.|.|.+.|+|.|+|+|||++..+. ....++.+.++.|.|.+....+|
T Consensus 1 ~P~f~~~P~~~~~~~~~--~~~~v~l~C~a~G~P~P~i~W~k~~~~i~---------~~~~~~~~~~g~L~I~~~~~~~D 69 (93)
T cd05849 1 GPVFEEQPIDTIYPEES--TEGKVSVNCRARANPFPIYKWRKNNLDID---------LTNDRYSMVGGNLVINNPDKYKD 69 (93)
T ss_pred CCEEEECCCCEEecCCc--cCCeEEEeCcCccCCCCEEEEEECCEEcc---------CCCCeEEEECCEEEECcCCcCCC
Confidence 48899999998887763 24679999999999999999999997652 22346677789999987634699
Q ss_pred CeeEEEEeecCceeeEeeeeEEe
Q psy14896 269 RGSYHCKASNKFGSIISESVQLA 291 (813)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~ 291 (813)
+|.|+|.|+|..|.+.+..+.|.
T Consensus 70 ~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 70 AGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CEEEEEEEEeCcceEEEccEEEe
Confidence 99999999999999988777765
No 43
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.64 E-value=6.3e-16 Score=120.86 Aligned_cols=73 Identities=32% Similarity=0.555 Sum_probs=65.1
Q ss_pred CCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee-eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 686 ~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
+|+++.|.|.+.|.|.|.|+|+|+|.++..+.++ ....++|+|.+++.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5899999999999999999999999988765433 234568999999999999999999999999999999876
No 44
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.64 E-value=1.8e-15 Score=122.28 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=67.7
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCcccCCCc-eeee--------cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFEN--------FNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~-~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 757 (813)
|+.++|.|.+.|.|+|.++|+|++..+..+. ++.. ..++|.|.++..+|+|.|+|.|.|.+|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 7899999999999999999999998885432 3311 126799999999999999999999999999999999
Q ss_pred EEcCCcc
Q psy14896 758 IQAEPNF 764 (813)
Q Consensus 758 V~~~P~~ 764 (813)
|..+|..
T Consensus 81 V~~~P~~ 87 (88)
T cd05735 81 VQEPPDP 87 (88)
T ss_pred EeCCCCC
Confidence 9998863
No 45
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.64 E-value=1e-15 Score=123.19 Aligned_cols=79 Identities=29% Similarity=0.562 Sum_probs=72.3
Q ss_pred CCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 680 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
.+..+..|++++|.|.+.|.|.|.++|+|+|.++....++...++.|.|.++..+|+|.|+|.|.|.+|...+++.|.|
T Consensus 7 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 7 SDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred CccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 3467889999999999999999999999999999877767666789999999999999999999999999999999876
No 46
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.63 E-value=2e-15 Score=122.13 Aligned_cols=87 Identities=26% Similarity=0.353 Sum_probs=72.2
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (813)
||.|+..|.+..+.+| +.++|.|.+.|+|.|.|+|+|++..+. ...++...++.|.|.+. +.+|
T Consensus 1 ~p~i~~~~~~~~~~~G-----~~v~l~C~~~G~P~P~v~W~k~~~~~~----------~~~~~~~~~~~L~I~~v-~~~D 64 (88)
T cd05851 1 PADINVKFKDTYALKG-----QNVTLECFALGNPVPVIRWRKILEPMP----------ATAEISMSGAVLKIFNI-QPED 64 (88)
T ss_pred CCceEEccccEEEeCC-----CcEEEEEEecccCCCEEEEEECCcCCC----------CCCEEecCCCEEEECcC-Chhh
Confidence 5889999999998887 669999999999999999999997652 22345555678888885 8999
Q ss_pred CeeEEEEeecCceeeEeeeeEEee
Q psy14896 269 RGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
+|.|+|.|.|..|.. +..+.|.|
T Consensus 65 ~G~Y~C~A~N~~G~~-~~~~~l~V 87 (88)
T cd05851 65 EGTYECEAENIKGKD-KHQARVYV 87 (88)
T ss_pred CEEEEEEEEcCCCce-EEEEEEEE
Confidence 999999999999987 56666665
No 47
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.63 E-value=9.3e-16 Score=126.37 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=68.6
Q ss_pred cCCCCCCeEEEEEEecC-CCCCeEEEEeCCcccCCCcee--ee-------cceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896 682 EAPKAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYF--EN-------FNRILTIPNVKVEDQGEYICRASNDRSALE 751 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~--~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 751 (813)
+.+.+|++++|.|.+.| .|+|.++|+|||.+|...... .. ..+.|.|.++..+|+|.|+|.|+|..|.++
T Consensus 13 ~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~ 92 (101)
T cd04975 13 IFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKS 92 (101)
T ss_pred EEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEE
Confidence 56789999999999999 899999999999999754332 11 247899999999999999999999999999
Q ss_pred EEEEEEEE
Q psy14896 752 SSVTISIQ 759 (813)
Q Consensus 752 ~~~~l~V~ 759 (813)
.++.|.|+
T Consensus 93 ~t~~L~V~ 100 (101)
T cd04975 93 LTFELYVN 100 (101)
T ss_pred EEEEEEEE
Confidence 99999986
No 48
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.63 E-value=1e-15 Score=114.82 Aligned_cols=66 Identities=23% Similarity=0.465 Sum_probs=58.2
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
++|.|.+.|.|+|.++|||||++|... ...+.|.|.++..+|+|.|+|+|+|..|..++++.|.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999999632 235689999999999999999999999988888877764
No 49
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.63 E-value=1.2e-15 Score=118.13 Aligned_cols=69 Identities=26% Similarity=0.395 Sum_probs=59.4
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCC-ceeee---c--ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFEN---F--NRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~---~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
|.|.|.+.|.|.|.|+|+|+|..|..+ .++.. . ..+|.|.++..+|+|.|+|.|.|.+|++++++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 579999999999999999999998743 34321 1 237999999999999999999999999999999976
No 50
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.63 E-value=2.3e-15 Score=118.37 Aligned_cols=72 Identities=25% Similarity=0.543 Sum_probs=64.4
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
|++++|.|.+.|.|.|.|+|+|+|.++.... ++....+.|.|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7899999999999999999999999886532 44445678999999999999999999999999999999987
No 51
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.62 E-value=2.3e-15 Score=120.81 Aligned_cols=77 Identities=22% Similarity=0.365 Sum_probs=67.2
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-ceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 756 (813)
+.+.+|+.+.|.|.+.|.|+|.++|+|++.++... .++. ...+.|.|.++..+|+|.|+|.|.|..|+++.++.|
T Consensus 5 ~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l 84 (86)
T cd05894 5 IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV 84 (86)
T ss_pred EEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence 45788999999999999999999999999999754 2332 234689999999999999999999999999999998
Q ss_pred EE
Q psy14896 757 SI 758 (813)
Q Consensus 757 ~V 758 (813)
.|
T Consensus 85 ~V 86 (86)
T cd05894 85 KV 86 (86)
T ss_pred EC
Confidence 76
No 52
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.61 E-value=4.3e-15 Score=118.98 Aligned_cols=75 Identities=23% Similarity=0.458 Sum_probs=64.6
Q ss_pred CeEEEEEEecCCCCC--eEEEEeCCcccCCCc---ee---e--ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896 688 DKVRLECVAFGYPVP--SYNWTRRGSPLPRNA---YF---E--NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757 (813)
Q Consensus 688 ~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~---~~---~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 757 (813)
++++|.|.+.|+|.| .|+|+|||.+|.... ++ . ...+.|+|.+++.+|+|.|+|.|.|.+|+.++++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 478999999999987 689999999885432 22 1 1346899999999999999999999999999999999
Q ss_pred EEcCC
Q psy14896 758 IQAEP 762 (813)
Q Consensus 758 V~~~P 762 (813)
|.+||
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99987
No 53
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.61 E-value=3.5e-15 Score=116.92 Aligned_cols=73 Identities=25% Similarity=0.418 Sum_probs=63.6
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
|++++|.|.+.|+|.|.|+|+|+|+++.... ......+.|.|.+++.+|+|.|+|.|.|.+|...+++.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 7899999999999999999999999986331 223345689999999999999999999999999999999883
No 54
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.61 E-value=5.7e-15 Score=121.83 Aligned_cols=91 Identities=23% Similarity=0.351 Sum_probs=74.3
Q ss_pred CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCcc
Q psy14896 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQ 265 (813)
Q Consensus 190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~ 265 (813)
|.|+..|.+..+..| +.+.|.|.+.|.|.|.+.|+|||.+|.. +.++... ...|+|.+. .
T Consensus 1 p~~~~~p~~~~v~~G-----~~v~l~C~~~G~p~p~v~W~kdg~~l~~----------~~~~~~~~~~~~s~L~I~~~-~ 64 (98)
T cd05762 1 PQIIQFPEDMKVRAG-----ESVELFCKVTGTQPITCTWMKFRKQIQE----------GEGIKIENTENSSKLTITEG-Q 64 (98)
T ss_pred CceEECCcCEEEECC-----CEEEEEEEEcccCCCceEEEECCEEecC----------CCcEEEEecCCeeEEEECCC-C
Confidence 678899999999887 6699999999999999999999987632 2233322 456788775 8
Q ss_pred ccCCeeEEEEeecCceeeEeeeeEEeeeeecc
Q psy14896 266 VEDRGSYHCKASNKFGSIISESVQLAFGFIGE 297 (813)
Q Consensus 266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~ 297 (813)
.+|+|.|+|.|.|..|.. ..++.|.|...|.
T Consensus 65 ~~D~G~Ytc~a~N~~G~~-~~~~~l~V~~~P~ 95 (98)
T cd05762 65 QEHCGCYTLEVENKLGSR-QAQVNLTVVDKPD 95 (98)
T ss_pred hhhCEEEEEEEEcCCCce-eEEEEEEEecCCC
Confidence 999999999999999998 6678888876654
No 55
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.61 E-value=3e-15 Score=115.40 Aligned_cols=70 Identities=29% Similarity=0.495 Sum_probs=63.4
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
+.|.|.+.|.|+|.++|+|||.+|..+.++....++|.|.+++.+|+|.|+|.|.|..|..+.++.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4799999999999999999999998877776667899999999999999999999999998888877764
No 56
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.60 E-value=2.4e-15 Score=116.68 Aligned_cols=69 Identities=28% Similarity=0.466 Sum_probs=59.1
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCC-ceeeec-----ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENF-----NRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
|+|.|.+.|.|.|.|+|+|++.++..+ .++... ..+|.|.++..+|+|.|+|.|.|.+|+.++++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999999999999999998753 333221 126999999999999999999999999999999876
No 57
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.60 E-value=3.8e-15 Score=117.25 Aligned_cols=75 Identities=17% Similarity=0.392 Sum_probs=64.5
Q ss_pred CeEEEEEEecCCC--CCeEEEEeCCcccCC---Cceeee-----cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896 688 DKVRLECVAFGYP--VPSYNWTRRGSPLPR---NAYFEN-----FNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757 (813)
Q Consensus 688 ~~v~l~C~~~g~P--~p~i~W~k~g~~l~~---~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 757 (813)
+++.|.|.+.++| ++.|+|+|||++|.. +.++.. ..+.|.|.+++.+|+|.|+|.|+|.+++.++++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 4789999998755 779999999999962 224332 356899999999999999999999999999999999
Q ss_pred EEcCC
Q psy14896 758 IQAEP 762 (813)
Q Consensus 758 V~~~P 762 (813)
|++||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99998
No 58
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.60 E-value=3.3e-15 Score=122.46 Aligned_cols=77 Identities=27% Similarity=0.446 Sum_probs=67.6
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee-----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 756 (813)
..+.+|++++|.|.+.|.|.|.|.|+|+|.++..+.++. ....+|+|.+++.+|+|.|+|.|.|.+|.++..+.|
T Consensus 11 v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05737 11 VTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTV 90 (92)
T ss_pred EEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence 567899999999999999999999999999987655332 123579999999999999999999999999999988
Q ss_pred EE
Q psy14896 757 SI 758 (813)
Q Consensus 757 ~V 758 (813)
.|
T Consensus 91 ~v 92 (92)
T cd05737 91 SV 92 (92)
T ss_pred eC
Confidence 76
No 59
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.60 E-value=2.9e-15 Score=123.80 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=68.7
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----------ecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----------NFNRILTIPNVKVEDQGEYICRASNDRSALE 751 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 751 (813)
..+..|+.++|.|.+.|+|+|.|+|+|||.+|..+.... ...++|+|.+++.+|+|.|+|.|.|..|..+
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~ 92 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKS 92 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEE
Confidence 567889999999999999999999999999997654211 1236899999999999999999999999999
Q ss_pred EEEEEEEE
Q psy14896 752 SSVTISIQ 759 (813)
Q Consensus 752 ~~~~l~V~ 759 (813)
.++.|.|+
T Consensus 93 ~t~~l~V~ 100 (101)
T cd05859 93 YTFALQIQ 100 (101)
T ss_pred EEEEEEEE
Confidence 99999986
No 60
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.59 E-value=6.5e-15 Score=112.42 Aligned_cols=69 Identities=26% Similarity=0.582 Sum_probs=60.6
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 757 (813)
|++++|.|.+.|.|.|.|+|+|+|.++....++......|+|.+++ |+|.|+|.|.|.+|..++++.|+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 7899999999999999999999999987766555556689999974 89999999999999999888773
No 61
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.59 E-value=5.2e-15 Score=114.36 Aligned_cols=70 Identities=29% Similarity=0.546 Sum_probs=61.3
Q ss_pred eEEEEEEecCCCCCeEEEEeCCcccCCCceee-ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 689 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 689 ~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
++.|.|.+.|.|.|.|+|+|+|..+..+.++. .....|.|.+++.+|+|.|+|.|.|.+|+.++++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999999999999999999887665443 23557899999999999999999999999999999875
No 62
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.58 E-value=8.8e-15 Score=119.05 Aligned_cols=78 Identities=33% Similarity=0.614 Sum_probs=69.6
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
..+.+|+++.|.|.+.|.|.|.++|+|++..+.........+..|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 11 ~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 11 TYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ 88 (88)
T ss_pred eEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence 557899999999999999999999999988776655444557899999999999999999999999999999999884
No 63
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.58 E-value=5.9e-15 Score=112.34 Aligned_cols=69 Identities=28% Similarity=0.447 Sum_probs=58.8
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
+.|.|.+.|.|.|.++|+|||++|....++. ....|.|.++..+|+|.|+|.|.|.+|+.+...++.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK-RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEc-cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 4799999999999999999999997665443 34689999999999999999999999987776666553
No 64
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.58 E-value=9.4e-15 Score=115.47 Aligned_cols=72 Identities=29% Similarity=0.492 Sum_probs=64.6
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
|++++|.|.+.|.|.|.|+|+++|..+.... ........|+|.+++.+|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 7899999999999999999999999886543 23445678999999999999999999999999999999987
No 65
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.58 E-value=1.3e-14 Score=120.13 Aligned_cols=79 Identities=29% Similarity=0.576 Sum_probs=69.4
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-cee--eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
..+..|++++|.|.+.|.|.|.|+|+|+|..+... .++ ....+.|+|.+++.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V 92 (95)
T cd05730 13 ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKV 92 (95)
T ss_pred eEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 46789999999999999999999999999988765 333 233467999999999999999999999999999999998
Q ss_pred Ec
Q psy14896 759 QA 760 (813)
Q Consensus 759 ~~ 760 (813)
..
T Consensus 93 ~~ 94 (95)
T cd05730 93 FA 94 (95)
T ss_pred Ee
Confidence 64
No 66
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.57 E-value=9.5e-15 Score=113.20 Aligned_cols=67 Identities=22% Similarity=0.381 Sum_probs=58.2
Q ss_pred EEEEEecCCCCCeEEEEeCCcccCCCceee---------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896 691 RLECVAFGYPVPSYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757 (813)
Q Consensus 691 ~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 757 (813)
.|.|.+.|+|+|.|+|+|||++|..+.+.. ...+.|.|.++..+|+|.|+|+|+|.+|++++++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 478999999999999999999998765421 1245899999999999999999999999999988875
No 67
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.57 E-value=1.1e-14 Score=113.47 Aligned_cols=72 Identities=28% Similarity=0.436 Sum_probs=64.2
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCcccCCCceeee-cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN-FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
|+++.|.|.+.|.|.|.++|+|++..+..+.++.. ....|.|.+++.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 78999999999999999999999999876654432 3468999999999999999999999999999999876
No 68
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.57 E-value=1.5e-14 Score=117.14 Aligned_cols=77 Identities=23% Similarity=0.533 Sum_probs=67.2
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee-----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 756 (813)
..+.+|+.+.|.|.+.|.|.|.++|+|+|..+..+.+. .....+|.|.++..+|+|.|+|.|.|.+|+.+.++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 45788999999999999999999999999998765432 2234579999999999999999999999999999998
Q ss_pred EE
Q psy14896 757 SI 758 (813)
Q Consensus 757 ~V 758 (813)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 76
No 69
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.57 E-value=1.1e-14 Score=112.57 Aligned_cols=70 Identities=36% Similarity=0.659 Sum_probs=61.2
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCCce-eeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
+.|.|.+.|.|.|.|+|+|++..+..+.. ......+|.|.+++.+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 47999999999999999999988865432 33456799999999999999999999999999999999873
No 70
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.57 E-value=1.8e-14 Score=117.71 Aligned_cols=77 Identities=25% Similarity=0.457 Sum_probs=64.5
Q ss_pred cCCCCCCeEEEEEEecCCCC-CeEEEEe-CCcccCC-Cceee-----ecceEEEECCCCCCCCEEEEEEEEcCC-CceEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPV-PSYNWTR-RGSPLPR-NAYFE-----NFNRILTIPNVKVEDQGEYICRASNDR-SALES 752 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~-p~i~W~k-~g~~l~~-~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~-G~~~~ 752 (813)
..+.+|++++|.|.+.|.|. |.|+|++ +|..+.. +.++. ...++|+|.+++.+|+|.|+|.|+|.+ |..++
T Consensus 10 ~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~ 89 (96)
T cd05865 10 GEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEA 89 (96)
T ss_pred cEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence 45788999999999999995 7999998 7877755 33332 123689999999999999999999997 88999
Q ss_pred EEEEEE
Q psy14896 753 SVTISI 758 (813)
Q Consensus 753 ~~~l~V 758 (813)
++.|.|
T Consensus 90 s~~l~v 95 (96)
T cd05865 90 TVNVKI 95 (96)
T ss_pred EEEEEE
Confidence 999887
No 71
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.57 E-value=1.3e-14 Score=111.82 Aligned_cols=69 Identities=30% Similarity=0.561 Sum_probs=60.8
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
++|.|.+.|.|+|.++|+|++..+..+.........|+|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 579999999999999999998887665443345678999999999999999999999999999998876
No 72
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.56 E-value=1.8e-14 Score=112.85 Aligned_cols=70 Identities=26% Similarity=0.493 Sum_probs=61.5
Q ss_pred eEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 689 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 689 ~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
.+.|.|.+.|.|.|.++|+|+|..+..+.++. ...+.|.|.++..+|+|.|+|.|.|.+|.++.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 47899999999999999999999986655432 23568999999999999999999999999999999876
No 73
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.56 E-value=1.8e-14 Score=117.55 Aligned_cols=77 Identities=22% Similarity=0.321 Sum_probs=67.0
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCcee----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 757 (813)
..+.+|+.+.|.|.+.|.|.|.|+|+|+|..+...... ......|+|.++..+|.|.|+|.|.|.+|+.++++.|.
T Consensus 10 ~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 10 TVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred EEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 45889999999999999999999999999988655431 12245899999999999999999999999999999987
Q ss_pred E
Q psy14896 758 I 758 (813)
Q Consensus 758 V 758 (813)
|
T Consensus 90 v 90 (90)
T cd04972 90 V 90 (90)
T ss_pred C
Confidence 5
No 74
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.56 E-value=1.5e-14 Score=112.86 Aligned_cols=69 Identities=28% Similarity=0.414 Sum_probs=58.9
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCC-ceeee-----cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFEN-----FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
++|.|.+.|.|.|.|+|+|+|..+..+ .++.. ...+|.|.+++.+|+|.|+|.|.|.+|+.++++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 579999999999999999999998743 33321 1237999999999999999999999999999999875
No 75
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.56 E-value=2.2e-14 Score=121.01 Aligned_cols=79 Identities=27% Similarity=0.482 Sum_probs=67.5
Q ss_pred CCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-ceee--------ecceEEEECCCC-CCCCEEEEEEEEcCCCceEEEE
Q psy14896 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFE--------NFNRILTIPNVK-VEDQGEYICRASNDRSALESSV 754 (813)
Q Consensus 685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~--------~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~~~ 754 (813)
..|..++|.|.+.|.|.|.++|+|||..|... .++. ...++|+|.++. .+|.|.|+|.|.|.+|.++.++
T Consensus 21 ~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i 100 (109)
T cd05773 21 DGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI 100 (109)
T ss_pred CCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence 35789999999999999999999999988643 2321 114689999997 6999999999999999999999
Q ss_pred EEEEEcCCc
Q psy14896 755 TISIQAEPN 763 (813)
Q Consensus 755 ~l~V~~~P~ 763 (813)
.|.|..+|.
T Consensus 101 ~L~~~~~p~ 109 (109)
T cd05773 101 QLVSTSRPD 109 (109)
T ss_pred EEEecCCCC
Confidence 999999884
No 76
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.56 E-value=2e-14 Score=113.77 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=67.3
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
..+.+|+.++|.|.+.|. .|.|+|+|||.+|..+.++......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 4 ~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 4 YSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred EEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 467899999999999996 5699999999999877666555678999999999999999999999999988888765
No 77
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.56 E-value=2e-14 Score=117.84 Aligned_cols=79 Identities=22% Similarity=0.475 Sum_probs=68.3
Q ss_pred CCCcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896 679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSV 754 (813)
Q Consensus 679 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 754 (813)
+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+..+.++. ...++|.|.++..+|+|.|+|.|.|..|..+.++
T Consensus 10 p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 89 (92)
T cd05747 10 PRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQF 89 (92)
T ss_pred CccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEE
Confidence 344778999999999999999999999999999887655432 2246899999999999999999999999999988
Q ss_pred EEE
Q psy14896 755 TIS 757 (813)
Q Consensus 755 ~l~ 757 (813)
.|+
T Consensus 90 ~l~ 92 (92)
T cd05747 90 TLT 92 (92)
T ss_pred EeC
Confidence 874
No 78
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.56 E-value=1.1e-14 Score=111.91 Aligned_cols=68 Identities=32% Similarity=0.574 Sum_probs=60.0
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCCceee-ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 757 (813)
|+|.|.+.|.|.|.|+|+|+|..+..+.++. ...+.|.|.+++.+|+|.|+|.|.|.+|.++.++.|+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 5799999999999999999999887665443 2367899999999999999999999999999988874
No 79
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.55 E-value=2.2e-14 Score=115.72 Aligned_cols=75 Identities=24% Similarity=0.534 Sum_probs=64.4
Q ss_pred CeEEEEEEecCCCCC--eEEEEeCCcccCCCc---ee-----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896 688 DKVRLECVAFGYPVP--SYNWTRRGSPLPRNA---YF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757 (813)
Q Consensus 688 ~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~---~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 757 (813)
++++|.|.+.|.|.| .++|+|+|.+|.... ++ ....+.|.|.+++.+|+|.|+|.|.|.+|..++++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 478999999999988 679999999886332 11 12357899999999999999999999999999999999
Q ss_pred EEcCC
Q psy14896 758 IQAEP 762 (813)
Q Consensus 758 V~~~P 762 (813)
|.+||
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99987
No 80
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.54 E-value=2.5e-14 Score=110.52 Aligned_cols=72 Identities=25% Similarity=0.481 Sum_probs=59.4
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 287 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~ 287 (813)
|++++|.|.+.|.|.|+|.|+|++..+ ..+.++.+ .+++|.|.+. +.+|+|.|+|.|+|..|.+ +.+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l----------~~~~r~~~~~~g~L~I~~v-~~~D~G~Y~C~A~N~~G~~-~~~ 68 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELL----------VNNSRISIWDDGSLEILNI-TKLDEGSYTCFAENNRGKA-NST 68 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEec----------ccCCCEEEcCCCEEEECcC-ChhHCEEEEEEEECCCCce-eEE
Confidence 578999999999999999999999755 22345554 5789999986 8999999999999999988 556
Q ss_pred eEEee
Q psy14896 288 VQLAF 292 (813)
Q Consensus 288 ~~l~v 292 (813)
+.|.|
T Consensus 69 ~~l~~ 73 (73)
T cd05852 69 GVLSV 73 (73)
T ss_pred EEEEC
Confidence 66653
No 81
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.54 E-value=3.8e-14 Score=117.82 Aligned_cols=78 Identities=24% Similarity=0.439 Sum_probs=66.2
Q ss_pred CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc-----eee----ecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALE 751 (813)
Q Consensus 681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~-----~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 751 (813)
+..+.+|++++|.|.+.|.|.|.|+|+|++..+.... ++. ...+.|+|.+++.+|+|.|+|.|.|.+|.++
T Consensus 10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 3678899999999999999999999999997765432 221 2245899999999999999999999999999
Q ss_pred EEEEEEE
Q psy14896 752 SSVTISI 758 (813)
Q Consensus 752 ~~~~l~V 758 (813)
.++.|.|
T Consensus 90 ~s~~l~v 96 (96)
T cd05732 90 QSMYLEV 96 (96)
T ss_pred EEEEEeC
Confidence 9998875
No 82
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.53 E-value=2.3e-14 Score=111.95 Aligned_cols=73 Identities=34% Similarity=0.580 Sum_probs=59.2
Q ss_pred ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccE-EeeCCeEEEcCCccccCCeeEEEEeecCceeeEee
Q psy14896 208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF-TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286 (813)
Q Consensus 208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~ 286 (813)
||+++.|.|.+.|.|.|.|.|+|+|..+. .+.++ ...+++|.|.+. +.+|+|.|+|.|.|..|.. +.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~----------~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G~~-~~ 68 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLS----------VDRRHLVLSSGTLRISRV-ALHDQGQYECQAVNIVGSQ-RT 68 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECC----------CCCCeEEccCCeEEEeeC-CHHhCEEEEEEEEeCCCce-eE
Confidence 57889999999999999999999998652 12233 345778988886 8999999999999999987 55
Q ss_pred eeEEee
Q psy14896 287 SVQLAF 292 (813)
Q Consensus 287 ~~~l~v 292 (813)
++.|.|
T Consensus 69 ~~~L~V 74 (74)
T cd05745 69 VAQLTV 74 (74)
T ss_pred EEEEeC
Confidence 666654
No 83
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.53 E-value=3.3e-14 Score=117.88 Aligned_cols=75 Identities=25% Similarity=0.461 Sum_probs=63.4
Q ss_pred CCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc-----eee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896 684 PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSV 754 (813)
Q Consensus 684 ~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~-----~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 754 (813)
+..|+.++|.|.+.|.|.|.|+|++++..+.... ++. ...+.|.|.+++.+|+|.|+|.|.|.+|.++.++
T Consensus 14 ~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 93 (97)
T cd05869 14 MELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSM 93 (97)
T ss_pred EEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEE
Confidence 4568999999999999999999999998775432 111 1235899999999999999999999999999999
Q ss_pred EEEE
Q psy14896 755 TISI 758 (813)
Q Consensus 755 ~l~V 758 (813)
.|.|
T Consensus 94 ~l~v 97 (97)
T cd05869 94 YLEV 97 (97)
T ss_pred EEEC
Confidence 9876
No 84
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.53 E-value=3.3e-14 Score=111.79 Aligned_cols=70 Identities=36% Similarity=0.604 Sum_probs=57.9
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEE--EEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALES--SVTISIQ 759 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~--~~~l~V~ 759 (813)
++|.|.+.|.|.|.|+|+|+|.+|..+. .+....+.|.|.+++.+|+|.|.|.|.|.+|...+ .++|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5799999999999999999999986553 22334568999999999999999999999998754 5566553
No 85
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.53 E-value=4.2e-14 Score=111.53 Aligned_cols=68 Identities=22% Similarity=0.411 Sum_probs=58.2
Q ss_pred EEEEEecCCCCCeEEEEeCCcccCCCceee-----------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 691 RLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 691 ~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
.|.|.+.|.|+|.|+|+|||++|..+.+.. ...+.|+|.+++.+|+|.|+|.|+|.+|++++++.|..
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 478999999999999999999997665321 12457999999999999999999999999999888764
No 86
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.52 E-value=7.7e-14 Score=113.13 Aligned_cols=78 Identities=32% Similarity=0.502 Sum_probs=66.2
Q ss_pred CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCce-eeecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEE
Q psy14896 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISI 758 (813)
Q Consensus 681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V 758 (813)
.+.+.+|++++|.|.+.|. .|.|.|+|+|..+..... +....++|+|.+++.+|+|.|.|.|.|.+|.. +..+.|.|
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 3678999999999999999 999999999998865542 23345689999999999999999999999985 55788877
Q ss_pred E
Q psy14896 759 Q 759 (813)
Q Consensus 759 ~ 759 (813)
.
T Consensus 91 ~ 91 (91)
T cd05740 91 N 91 (91)
T ss_pred C
Confidence 3
No 87
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.52 E-value=6.3e-14 Score=112.76 Aligned_cols=84 Identities=33% Similarity=0.647 Sum_probs=69.1
Q ss_pred eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCee
Q psy14896 192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271 (813)
Q Consensus 192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~ 271 (813)
|+..|.+..+..| ++++|.|.+.|.|.|.+.|+|+|..+ ..+.++...++.|.|.+. +.+|+|.
T Consensus 2 ~~~~p~~~~~~~G-----~~~~l~C~~~g~p~p~v~W~k~g~~~----------~~~~~~~~~~~~L~i~~~-~~~D~G~ 65 (85)
T cd05728 2 WLKVISDTEADIG-----SSLRWECKASGNPRPAYRWLKNGQPL----------ASENRIEVEAGDLRITKL-SLSDSGM 65 (85)
T ss_pred ccccCCccEEcCC-----CcEEEEEEeeEeCCCEEEEEECCEEC----------CCCCeEEEeCCEEEEeeC-CHHHCEE
Confidence 5566788888777 66999999999999999999999865 233456667888998885 8999999
Q ss_pred EEEEeecCceeeEeeeeEEee
Q psy14896 272 YHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 272 Y~C~a~n~~g~~~s~~~~l~v 292 (813)
|+|.|.|..|.. +.++.|.|
T Consensus 66 Y~C~a~N~~G~~-~~~~~l~V 85 (85)
T cd05728 66 YQCVAENKHGTI-YASAELAV 85 (85)
T ss_pred EEEEEECCCCeE-EEEEEEEC
Confidence 999999999987 55666653
No 88
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.52 E-value=8.7e-14 Score=113.82 Aligned_cols=89 Identities=38% Similarity=0.764 Sum_probs=72.0
Q ss_pred CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCC
Q psy14896 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269 (813)
Q Consensus 190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 269 (813)
|.|+.+|.+..+.++ ..|+.++|.|.+.|+|.|.|+|+|++..+. .....++...++.|.|.+....+|+
T Consensus 2 P~f~~~p~~~~~~~~--~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~--------~~~~~~~~~~~~~L~i~~~~~~~d~ 71 (91)
T cd04967 2 PVFEEQPDDTIFPEE--SDEGKVSLNCRARGSPPPTYRWLMNGTEID--------DEPDSRYSLVGGNLVISNPSKAKDA 71 (91)
T ss_pred CeeEeCCCCEEccCC--CCCCEEEEEEeeeEcCCCEEEEEECCEECC--------CCCCCCEEEECCEEEEecCCccCCC
Confidence 789999999887765 335779999999999999999999997652 2234566677889999876446999
Q ss_pred eeEEEEeecCceeeEeeee
Q psy14896 270 GSYHCKASNKFGSIISESV 288 (813)
Q Consensus 270 G~Y~C~a~n~~g~~~s~~~ 288 (813)
|.|+|.|+|..|.+.|..+
T Consensus 72 G~Y~C~a~N~~G~~~S~~~ 90 (91)
T cd04967 72 GRYQCLASNIVGTVLSREA 90 (91)
T ss_pred EEEEEEEEcCCCEEEeccc
Confidence 9999999999999877644
No 89
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.52 E-value=4.6e-14 Score=117.25 Aligned_cols=78 Identities=28% Similarity=0.507 Sum_probs=64.3
Q ss_pred CcCCCCCCeEEEEEEecCCCCCeEEEEeC--CcccCC-----Cceeee----cceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLPR-----NAYFEN----FNRILTIPNVKVEDQGEYICRASNDRSA 749 (813)
Q Consensus 681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~--g~~l~~-----~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 749 (813)
+..+.+|++++|.|.+.|.|.|.|+|+|+ |..+.. +.++.. ...+|+|.+++.+|+|.|+|.|.|.+|.
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 89 (98)
T cd05870 10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG 89 (98)
T ss_pred cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence 46788999999999999999999999994 444432 123321 2468999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy14896 750 LESSVTISI 758 (813)
Q Consensus 750 ~~~~~~l~V 758 (813)
.+.++.|.|
T Consensus 90 ~~~~~~l~~ 98 (98)
T cd05870 90 HQKSMYLDI 98 (98)
T ss_pred ceeEEEEeC
Confidence 999999875
No 90
>PHA02911 C-type lectin-like protein; Provisional
Probab=99.51 E-value=6.4e-14 Score=122.34 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=79.4
Q ss_pred CCCchhhhccCCeEEEEecCCcCCH--HHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896 27 LRCPQHWVQYRDSCYRFVKSPLKTR--NDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV 104 (813)
Q Consensus 27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~--~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~ 104 (813)
.+||.+|+.|+++||+|+... ++| +.|+++|..+||+|+. ++.||++||+++ |.|+. +.|.
T Consensus 101 ~pC~~nW~~H~nkCYlFS~~s-~sWsW~~Srr~C~~kGATLLk-~sdEELeFIqn~----------wkGks-----~~~f 163 (213)
T PHA02911 101 PICSRDWINHMGICLLSLGEE-VGFRMEIAKRFCEKKDADLIG-KIDEEKKALENI----------WTGND-----HSRF 163 (213)
T ss_pred CCCchhhHhhCCEEEEEeccc-cccchhHHHHHHHhcCCEecc-CcHHHHHHHHHH----------Hhccc-----cceE
Confidence 458899999999999999984 555 9999999999999999 777999999864 44432 3567
Q ss_pred EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeec
Q psy14896 105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEAS 160 (813)
Q Consensus 105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~ 160 (813)
|+||..-.. . .+..+.|+.+....-...-.+..-.|+....++|++.
T Consensus 164 WID~r~ngS--t-------~n~s~sCA~Is~~~~~~~~~V~sesCs~~~~wICqK~ 210 (213)
T PHA02911 164 WIDNRAAAS--T-------FDPVNECAIGTQNHIPEVPEVLKSPCDERHSFICIKK 210 (213)
T ss_pred EecCccccc--e-------ecCCCCeEEEEcccccCCCceEccccCCCceEEEEec
Confidence 776631110 0 0125688888654222234666899999999999985
No 91
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.51 E-value=6.6e-14 Score=112.76 Aligned_cols=76 Identities=33% Similarity=0.630 Sum_probs=65.5
Q ss_pred CCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee--ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE--NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 683 ~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
.+..|++++|.|.+.|.|.|.++|+|+|..+....... ....+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 45679999999999999999999999999886554332 23468999999999999999999999999999888875
No 92
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.51 E-value=8.7e-14 Score=109.38 Aligned_cols=75 Identities=27% Similarity=0.486 Sum_probs=61.3
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 288 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~ 288 (813)
|++++|.|.+.|.|.|+|+|||+|..+... ....++...+++|.|.+. +.+|+|.|+|.|.|..|.. ...+
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~-------~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~-~~~~ 71 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGT-------DPDPRRHVSSGALILTDV-QPSDTAVYQCEARNRHGNL-LANA 71 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCC-------CCCceEEeeCCEEEECCC-ChhhCEEEEEEEECCCCeE-EEEE
Confidence 578999999999999999999999866321 123356667888999886 8999999999999999987 5567
Q ss_pred EEee
Q psy14896 289 QLAF 292 (813)
Q Consensus 289 ~l~v 292 (813)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd05867 72 HVHV 75 (76)
T ss_pred EEEE
Confidence 6665
No 93
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.51 E-value=1.7e-14 Score=118.49 Aligned_cols=78 Identities=36% Similarity=0.632 Sum_probs=69.9
Q ss_pred CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756 (813)
Q Consensus 681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 756 (813)
...+.+|++++|.|.+.|.|.|.++|+++|..+..+.++. ....+|.|.++..+|+|.|+|.|.|..|..++++.|
T Consensus 9 ~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l 88 (90)
T PF07679_consen 9 DVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNL 88 (90)
T ss_dssp EEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence 3678899999999999999999999999999998765432 346789999999999999999999999999999999
Q ss_pred EE
Q psy14896 757 SI 758 (813)
Q Consensus 757 ~V 758 (813)
.|
T Consensus 89 ~V 90 (90)
T PF07679_consen 89 TV 90 (90)
T ss_dssp EE
T ss_pred EC
Confidence 87
No 94
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.51 E-value=9.7e-14 Score=113.29 Aligned_cols=75 Identities=29% Similarity=0.519 Sum_probs=63.8
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCccc--------CCCceee-ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGSPL--------PRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~~l--------~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 757 (813)
|++++|.|.+.|.|.|.|.|+|+|..+ ....++. ..++.|+|.+++.+|+|.|+|.|.|.+|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 789999999999999999999998753 1222333 2356899999999999999999999999999999999
Q ss_pred EEcC
Q psy14896 758 IQAE 761 (813)
Q Consensus 758 V~~~ 761 (813)
|.+.
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 9864
No 95
>cd00037 CLECT C-type lectin (CTL)/C-type lectin-like (CTLD) domain. CLECT: C-type lectin (CTL)/C-type lectin-like (CTLD) domain; protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. This group is chiefly comprised of eukaryotic CTLDs, but contains some, as yet functionally uncharacterized, bacterial CTLDs. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces, including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. For example: mannose-binding lectin and lung surfactant proteins A and D bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, and apoptotic cells) and mediate functions associated with killing and phagocytosis; P (platlet)-, E (endothelial)-, and L (leukocyte)- selectins (sels) mediate the initia
Probab=99.51 E-value=7.9e-14 Score=121.33 Aligned_cols=115 Identities=26% Similarity=0.384 Sum_probs=95.8
Q ss_pred eEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCC-CCccccc
Q psy14896 39 SCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTN-LNELDAA 117 (813)
Q Consensus 39 ~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~-~~~~~~~ 117 (813)
.||+++.. .++|.+|+..|+.+||+|++|++.+|++||.+.+.. .....+|+|+.+....+.|.|.||+. ..+ ..|
T Consensus 1 ~Cy~~~~~-~~~~~~A~~~C~~~~~~L~~~~~~~e~~~i~~~~~~-~~~~~~wvg~~~~~~~~~~~~~~~~~~~~~-~~w 77 (116)
T cd00037 1 SCYKFSTE-KLTWEEAQEYCRSLGGHLASIHSEEENDFLASLLKK-SSSSDVWIGLNDLSSEGTWKWSDGSPLVDY-TNW 77 (116)
T ss_pred CCEEEcCC-ccCHHHHHHHHHHcCCEEcccCCHHHHHHHHHHHhC-CCCCCEEEcccccCcCCCeEecCCCccccc-cCC
Confidence 49999998 599999999999999999999999999999999854 24568999999887788999999999 555 466
Q ss_pred cCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896 118 FLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (813)
Q Consensus 118 ~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~ 159 (813)
..++|.......|+.+.... ...|.+..|.....|+|+.
T Consensus 78 ~~~~~~~~~~~~C~~~~~~~---~~~~~~~~C~~~~~~iC~~ 116 (116)
T cd00037 78 APGEPNPGGSEDCVVLSSSS---DGKWNDVSCSSKLPFICEK 116 (116)
T ss_pred CCCCcCCCCCCCeeEEccCC---CCCccCCCCCCCceeeecC
Confidence 66676455578999986654 3445599999999999974
No 96
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.50 E-value=8.8e-14 Score=113.56 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=66.9
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----e-cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----N-FNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 756 (813)
+.+.+|+.+.|.|.+.|.|.|.+.|||+|..+..+.++. . ...+|.|.+++.+|+|.|+|.|.|.+|.++.++.|
T Consensus 11 v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v 90 (92)
T cd05891 11 VTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTV 90 (92)
T ss_pred EEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence 678999999999999999999999999999887654331 1 12479999999999999999999999999999988
Q ss_pred EE
Q psy14896 757 SI 758 (813)
Q Consensus 757 ~V 758 (813)
.|
T Consensus 91 ~~ 92 (92)
T cd05891 91 SV 92 (92)
T ss_pred EC
Confidence 75
No 97
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.50 E-value=8.3e-14 Score=110.06 Aligned_cols=72 Identities=35% Similarity=0.522 Sum_probs=61.9
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCcccCCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
|++++|.|.+.|.|.|.|+|+|++..+....++. .....|+|.+++.+|+|.|+|.|.|..|...+.+.+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 7899999999999999999999998887655432 22468999999999999999999999999887776655
No 98
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.50 E-value=6.1e-14 Score=109.15 Aligned_cols=70 Identities=41% Similarity=0.820 Sum_probs=60.6
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCCc-eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRNA-YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
++|.|.+.|.|.|.++|+|++..+..+. ........|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 4799999999999999999998876543 223345789999999999999999999999999999999873
No 99
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.50 E-value=2.1e-13 Score=110.91 Aligned_cols=87 Identities=30% Similarity=0.471 Sum_probs=69.6
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (813)
||.|...|.+..+.+| ++++|.|.+.|.|.|.++|+|++..+. ........+++|.|.+. +.+|
T Consensus 1 p~~~~~~p~~~~~~~g-----~~v~l~C~~~g~P~p~v~W~k~~~~~~----------~~~~~~~~~~~L~i~~v-~~~D 64 (88)
T cd04968 1 PSIIVVFPKDTYALKG-----QNVTLECFALGNPVPQIKWRKVDGSMP----------SSAEISMSGAVLKIPNI-QFED 64 (88)
T ss_pred CCcEEECCCceEEeCC-----CcEEEEEEeeEeCCCEEEEEECCCcCC----------CccEEEEeCCEEEECCC-Cccc
Confidence 4667778888888777 669999999999999999999987541 12223356788888885 8999
Q ss_pred CeeEEEEeecCceeeEeeeeEEee
Q psy14896 269 RGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
+|.|+|.|.|..|.. +..+.|.|
T Consensus 65 ~G~Y~C~a~N~~G~~-~~~~~l~V 87 (88)
T cd04968 65 EGTYECEAENIKGKD-THQGRIYV 87 (88)
T ss_pred CEEEEEEEEECCCcE-EEEEEEEE
Confidence 999999999999986 55666665
No 100
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.49 E-value=9.4e-14 Score=105.73 Aligned_cols=68 Identities=25% Similarity=0.362 Sum_probs=56.7
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCC-ceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 757 (813)
+.|.|.+.|.|+|.++|+|||.++..+ .++.....+|.|.+++.+|+|.|+|.|+|..........++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 479999999999999999999998765 44544566899999999999999999999877655555444
No 101
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.49 E-value=1.2e-13 Score=108.44 Aligned_cols=70 Identities=31% Similarity=0.604 Sum_probs=58.2
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccC---CCcee--eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLP---RNAYF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~---~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
++|.|.+.|.|.|.|+|+|+|.... ...++ ....+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 4799999999999999999986432 12222 2335689999999999999999999999999999999883
No 102
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.49 E-value=8.5e-14 Score=113.31 Aligned_cols=73 Identities=26% Similarity=0.518 Sum_probs=59.0
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCC----cccCCCc--e-----------eeecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRG----SPLPRNA--Y-----------FENFNRILTIPNVKVEDQGEYICRASNDRSA 749 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g----~~l~~~~--~-----------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 749 (813)
|++++|.|.+.|.|.|.|+|+|++ ..+.... . +......|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999999999999963 3332111 0 1122357999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy14896 750 LESSVTISIQ 759 (813)
Q Consensus 750 ~~~~~~l~V~ 759 (813)
..+++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999999883
No 103
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.49 E-value=1.2e-13 Score=106.94 Aligned_cols=70 Identities=24% Similarity=0.474 Sum_probs=54.9
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee---CC--eEEEcCCccccCCeeEEEEeecCceeeEee
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS---GG--NLIINDPRQVEDRGSYHCKASNKFGSIISE 286 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~---~~--~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~ 286 (813)
|+|+|.+.|.|.|.|.|||||+.|. ..+.++.+. +| +|.|.+. +.+|+|.|+|.|.|..|.+ +.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~---------~~~~r~~~~~~~~g~~~L~I~~~-~~~D~G~Y~C~A~N~~G~~-~~ 69 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQ---------YNTDRISLYQDNSGRVTLLIKNV-NKKDAGWYTVSAVNEAGVA-TC 69 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECc---------CCCCeEEEEEcCCCcEEEEECCC-ChhhCEEEEEEEEcCcCeE-EE
Confidence 5799999999999999999998662 122344432 23 6888885 8999999999999999988 55
Q ss_pred eeEEee
Q psy14896 287 SVQLAF 292 (813)
Q Consensus 287 ~~~l~v 292 (813)
.+.|.|
T Consensus 70 ~a~L~V 75 (75)
T cd05892 70 HARLDV 75 (75)
T ss_pred EEEEeC
Confidence 677654
No 104
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.49 E-value=1.4e-13 Score=108.25 Aligned_cols=72 Identities=26% Similarity=0.477 Sum_probs=59.4
Q ss_pred CcCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEE-EEEE
Q psy14896 681 PEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTI 756 (813)
Q Consensus 681 ~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~~l 756 (813)
+..+.+|+++.|.|.+.|.|.| .|+|+|||.++... .....+.|.|..+ .|+|.|.|+|+|.+|...+ .++|
T Consensus 7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 3678999999999999999999 79999999998651 2234568999887 5889999999999997654 5554
No 105
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.48 E-value=1.9e-13 Score=115.08 Aligned_cols=95 Identities=27% Similarity=0.549 Sum_probs=71.0
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcC----Cc
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIND----PR 264 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~----~~ 264 (813)
||.|+..|.+..+.+| ++++|.|.+.|.|.|.|.|||+|..+.... ......+....++.+.+.. .+
T Consensus 1 ~P~i~~~p~~~~v~~G-----~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~ 71 (100)
T cd07693 1 PPRIVEHPSDLIVSKG-----DPATLNCKAEGRPTPTIQWLKNGQPLETDK----DDPRSHRIVLPSGSLFFLRVVHGRK 71 (100)
T ss_pred CCeEEecCceeEEcCC-----CeEEEEeeCCcCCCCEEEEEECCEECcccc----CCCCcceEEecCCcEEEEEeeccCC
Confidence 5889999999998887 669999999999999999999998764210 0011222334455543221 12
Q ss_pred cccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896 265 QVEDRGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
+.+|+|.|+|.|+|..|.+.+..+.|.|
T Consensus 72 ~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 72 GRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CcCcCEEEEEEEEccccceecceEEEEe
Confidence 6899999999999999997788888876
No 106
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.48 E-value=1.3e-13 Score=111.50 Aligned_cols=76 Identities=28% Similarity=0.501 Sum_probs=63.2
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEe-CCcccCCCceeee----cceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYFEN----FNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVT 755 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~ 755 (813)
..+.+|+++.|.|.+.|.|. .++|++ +|.++..+.++.. ....|+|.++..+|+|.|+|.|+|..|.. .+++.
T Consensus 10 ~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~ 88 (92)
T cd05866 10 VELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVV 88 (92)
T ss_pred eEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEE
Confidence 56789999999999999998 999998 4677765554432 12489999999999999999999999985 67788
Q ss_pred EEE
Q psy14896 756 ISI 758 (813)
Q Consensus 756 l~V 758 (813)
|.|
T Consensus 89 l~~ 91 (92)
T cd05866 89 LEI 91 (92)
T ss_pred EEE
Confidence 776
No 107
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.48 E-value=1.4e-13 Score=107.45 Aligned_cols=70 Identities=26% Similarity=0.459 Sum_probs=58.9
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccC--CCcee-eecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLP--RNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQ 759 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~--~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 759 (813)
++|.|.+.|.|.|.|+|+|++.++. .+.++ ...++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4799999999999999999999886 33333 2345689999999999999999999999984 778888873
No 108
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.48 E-value=2.4e-13 Score=111.45 Aligned_cols=85 Identities=21% Similarity=0.432 Sum_probs=67.6
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCc
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPR 264 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~ 264 (813)
||.|+..|.+..+.+| +.+.|.|.+.|+|.|.+.|+|+|..+. .+.++.+. .++|.|.+.
T Consensus 3 ~~~~~~~p~~~~~~~G-----~~~~L~C~~~g~P~p~v~W~k~g~~l~----------~~~~~~~~~~~~~~~L~i~~~- 66 (92)
T cd05747 3 PATILTKPRSLTVSEG-----ESARFSCDVDGEPAPTVTWMREGQIIV----------SSQRHQITSTEYKSTFEISKV- 66 (92)
T ss_pred CCcccccCccEEEeCC-----CcEEEEEEEeecCCCEEEEEECCEECC----------CCCcEEEEEcCCeeEEEECCC-
Confidence 6889999999998888 669999999999999999999997652 22233332 346788775
Q ss_pred cccCCeeEEEEeecCceeeEeeeeEE
Q psy14896 265 QVEDRGSYHCKASNKFGSIISESVQL 290 (813)
Q Consensus 265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l 290 (813)
+.+|+|.|+|.|+|..|.. +..+.|
T Consensus 67 ~~~D~G~Y~C~a~N~~G~~-~~~~~l 91 (92)
T cd05747 67 QMSDEGNYTVVVENSEGKQ-EAQFTL 91 (92)
T ss_pred CcccCEeEEEEEEcCCCCE-eEEEEe
Confidence 8999999999999999976 444443
No 109
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.48 E-value=1.4e-13 Score=106.84 Aligned_cols=70 Identities=30% Similarity=0.528 Sum_probs=54.9
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee-C--C--eEEEcCCccccCCeeEEEEeecCceeeEee
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-G--G--NLIINDPRQVEDRGSYHCKASNKFGSIISE 286 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~-~--~--~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~ 286 (813)
|+|+|.+.|.|.|.|.|+|++..+. ....++.+. + + +|.|.+. +.+|+|.|+|.|.|..|.+ +.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~---------~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G~~-~~ 69 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLT---------HNTDRVSMHQDNCGYICLLIQGA-TKEDAGWYTVSAKNEAGIV-SC 69 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECC---------CCCCeEEEEEcCCCEEEEEECCC-CHHHCEEEEEEEEcCCCEE-EE
Confidence 5799999999999999999998662 122344443 2 2 4777775 8999999999999999998 66
Q ss_pred eeEEee
Q psy14896 287 SVQLAF 292 (813)
Q Consensus 287 ~~~l~v 292 (813)
++.|.|
T Consensus 70 ~a~L~V 75 (75)
T cd05893 70 TARLDV 75 (75)
T ss_pred EEEEeC
Confidence 677764
No 110
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.48 E-value=2e-13 Score=106.89 Aligned_cols=75 Identities=27% Similarity=0.479 Sum_probs=57.8
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 288 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~ 288 (813)
|++++|.|.+.|+|.|+|+|+|||+++... .........++.|.|.+ ++.+|+|.|+|.|+|..|.+ +.++
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~-------~~~~~~~~~~~~l~i~~-v~~~D~G~Y~C~A~N~~G~~-~~~~ 71 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIA-------PTDPSRKVDGDTIIFSK-VQERSSAVYQCNASNEYGYL-LANA 71 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEcccc-------CCCceEEecCCEEEECC-CCHhhCEEEEEEEEcCCCEE-EEEE
Confidence 578999999999999999999999876311 11122234455666666 58999999999999999998 6667
Q ss_pred EEee
Q psy14896 289 QLAF 292 (813)
Q Consensus 289 ~l~v 292 (813)
.|.|
T Consensus 72 ~l~v 75 (76)
T cd05868 72 FVNV 75 (76)
T ss_pred EEEe
Confidence 7765
No 111
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=1.9e-13 Score=107.06 Aligned_cols=72 Identities=29% Similarity=0.498 Sum_probs=61.3
Q ss_pred CCeEEEEEEecCCCCCeEEEEe-CCcccCCCcee-eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
|+.+.|.|.+.|.|.|.++|++ ++..+....+. ....++|.|..+..+|+|.|+|.|.|..|.++.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 56666554433 234578999999999999999999999999999988875
No 112
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.47 E-value=3e-13 Score=111.74 Aligned_cols=89 Identities=33% Similarity=0.639 Sum_probs=69.3
Q ss_pred eeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCc----ccc
Q psy14896 192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR----QVE 267 (813)
Q Consensus 192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~~ 267 (813)
|+.+|.+..+.+| +++.|.|.+.|.|.|.|.|+|||..+... .........+++++|.+.. +.+
T Consensus 2 f~~~P~~~~~~~g-----~~v~l~C~v~g~P~p~i~W~k~g~~l~~~-------~~~~~~~~~~~~l~i~~v~~~~~~~~ 69 (95)
T cd05722 2 FLSEPSDIVAVRG-----GPVVLNCSAEGEPPPKIEWKKDGVLLNLV-------SDERRQQLPNGSLLITSVVHSKHNKP 69 (95)
T ss_pred cEECCCCeEEcCC-----CCEEEeeecccCCCCEEEEEECCeECccc-------cCcceEEccCCeEEEeeeeccCCCCC
Confidence 6677888888776 77999999999999999999999866321 1112334457777776531 579
Q ss_pred CCeeEEEEeecC-ceeeEeeeeEEee
Q psy14896 268 DRGSYHCKASNK-FGSIISESVQLAF 292 (813)
Q Consensus 268 d~G~Y~C~a~n~-~g~~~s~~~~l~v 292 (813)
|+|.|+|.|.|. .|...+..+.|.|
T Consensus 70 D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 70 DEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred cCEEEEEEEECCccCcEEEeeeEEeC
Confidence 999999999999 9999888888875
No 113
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.47 E-value=1.3e-13 Score=103.40 Aligned_cols=65 Identities=22% Similarity=0.456 Sum_probs=52.4
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 291 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~ 291 (813)
++|.|.+.|.|.|.++|||||++|.. ....+.|.|.+. ..+|+|.|+|.|+|..|.. +.++.++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~--------------~~~~~~L~i~~v-~~~D~G~YtC~a~N~~g~~-~~~~~~~ 64 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISG--------------KHSQHSLQIKDV-TEASAGTYTLVLWNSAAGL-EKRISLE 64 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcc--------------cCCcCEEEECCC-CHHHCEEEEEEEEECCccE-EEEEEEE
Confidence 57999999999999999999987621 012457888885 8999999999999999975 5556665
Q ss_pred e
Q psy14896 292 F 292 (813)
Q Consensus 292 v 292 (813)
+
T Consensus 65 l 65 (67)
T cd05863 65 L 65 (67)
T ss_pred E
Confidence 4
No 114
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.47 E-value=2.8e-13 Score=104.71 Aligned_cols=70 Identities=29% Similarity=0.536 Sum_probs=56.2
Q ss_pred cEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE-eeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeE
Q psy14896 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ 289 (813)
Q Consensus 211 ~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~ 289 (813)
+++|.|.+.|.|.|.|+|+|+|..+. ...++. ..+++|.|.+. +.+|+|.|+|.|.|..|.+ +.++.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~----------~~~~~~~~~~~~l~i~~v-~~~D~G~Y~C~A~N~~G~~-~~~~~ 68 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVI----------PSDYFKIVKEHNLQVLGL-VKSDEGFYQCIAENDVGNV-QASAQ 68 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECC----------CCCCEEEEecCCEEEEcC-CcccCEEEEEEEEcCCCEE-EEEEE
Confidence 38999999999999999999997652 222333 34678888875 8999999999999999987 56666
Q ss_pred Eee
Q psy14896 290 LAF 292 (813)
Q Consensus 290 l~v 292 (813)
|.|
T Consensus 69 L~V 71 (71)
T cd05723 69 LII 71 (71)
T ss_pred EEC
Confidence 654
No 115
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.46 E-value=2.3e-13 Score=106.91 Aligned_cols=79 Identities=22% Similarity=0.393 Sum_probs=62.2
Q ss_pred eeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCe
Q psy14896 192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270 (813)
Q Consensus 192 ~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G 270 (813)
|+..|.++.+.+| +++.|.|++.|.|.| +|.|+|||.++.. ......+.|.|.. ..|+|
T Consensus 1 f~~~P~~~~v~~G-----~~v~l~C~a~G~P~P~~I~W~k~g~~l~~------------~~~~~~s~L~i~~---~~d~g 60 (81)
T cd05749 1 FTVEPEDLSVTAN-----TPFNLTCQAVGPPEPVEILWWQGGSPLGD------------PPAPSPSVLNVPG---LNETS 60 (81)
T ss_pred CcCCCCceEEcCC-----CCEEEEEEeeeecCCeEEEEEECCEECCC------------CCCCCCCEEEEcc---ccCCe
Confidence 5667888888887 669999999999999 7999999987631 1122345677765 36899
Q ss_pred eEEEEeecCceeeEeeeeEE
Q psy14896 271 SYHCKASNKFGSIISESVQL 290 (813)
Q Consensus 271 ~Y~C~a~n~~g~~~s~~~~l 290 (813)
.|.|.|+|..|...+..++|
T Consensus 61 ~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 61 KFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred EEEEEEEeccCcEEeeeEEe
Confidence 99999999999887777665
No 116
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.46 E-value=4.1e-13 Score=110.12 Aligned_cols=72 Identities=26% Similarity=0.453 Sum_probs=59.0
Q ss_pred CCCCeEEEEEEecCCCCCeEEEEeCCcccCCC--ceeeecceEEEECCCC-CCCCEEEEEEEEcCCCceEE-EEEE
Q psy14896 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN--AYFENFNRILTIPNVK-VEDQGEYICRASNDRSALES-SVTI 756 (813)
Q Consensus 685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~--~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~-~~~l 756 (813)
..|++++|.|.+.|+|.|.|+|+|||.+|... .++...++.|.|.++. .+|+|.|+|.|+|.+|...+ .+.|
T Consensus 17 ~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 17 SPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 34679999999999999999999999998633 3454456789998865 69999999999999998654 5555
No 117
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.46 E-value=2.3e-13 Score=112.11 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=60.8
Q ss_pred ceeecCCCccccccEEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEEe--------eCCeEEEcCCccccC
Q psy14896 198 DVVFDLSKRSILNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--------SGGNLIINDPRQVED 268 (813)
Q Consensus 198 ~~~v~~g~~~~g~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~~d 268 (813)
.+.+.+| +++.|.|.+.| .|+|.+.|+|||.+|... ...... ...+|.|.+. +.+|
T Consensus 12 ~~~v~~G-----~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~---------~~~~~~~~~~~~~~~~~~L~i~~v-~~~D 76 (101)
T cd04975 12 TIFVNLG-----ENLNLVVEVEAYPPPPHINWTYDNRTLTNK---------LTEIVTSENESEYRYVSELKLVRL-KESE 76 (101)
T ss_pred eEEEECC-----CCEEEEEEEEecCCCCccEEEeCCeeCCCC---------cceeEEEeccCcceEEEEEEEeec-CHhh
Confidence 4556555 77999999999 899999999999877421 111111 1356777775 8999
Q ss_pred CeeEEEEeecCceeeEeeeeEEeee
Q psy14896 269 RGSYHCKASNKFGSIISESVQLAFG 293 (813)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~v~ 293 (813)
+|.|+|.|+|..|.+ +..+.|.|.
T Consensus 77 ~G~Ytc~A~N~~G~~-~~t~~L~V~ 100 (101)
T cd04975 77 AGTYTFLASNSDASK-SLTFELYVN 100 (101)
T ss_pred CeeEEEEEECCCccE-EEEEEEEEE
Confidence 999999999999987 677777764
No 118
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.45 E-value=2.6e-13 Score=110.59 Aligned_cols=77 Identities=19% Similarity=0.397 Sum_probs=65.7
Q ss_pred cCCCCCCeEEEEEEecC-----CCCCeEEEEeCCcccCC----CceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEE
Q psy14896 682 EAPKAGDKVRLECVAFG-----YPVPSYNWTRRGSPLPR----NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES 752 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g-----~P~p~i~W~k~g~~l~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 752 (813)
..+.+|+.+.|.|.+.| .|.|.|+|||+|..+.. ..++...+..|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~ 88 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKV 88 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEE
Confidence 45678999999999999 68899999999976532 2344444678999999999999999999999999999
Q ss_pred EEEEEE
Q psy14896 753 SVTISI 758 (813)
Q Consensus 753 ~~~l~V 758 (813)
++.|.|
T Consensus 89 ~~~L~v 94 (94)
T cd05756 89 SISLTV 94 (94)
T ss_pred EEEEEC
Confidence 998876
No 119
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.45 E-value=3.3e-13 Score=110.03 Aligned_cols=72 Identities=26% Similarity=0.486 Sum_probs=58.9
Q ss_pred CCeEEEEEEecCCCCCeEEEEeC----CcccCCCce----ee---------ecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRR----GSPLPRNAY----FE---------NFNRILTIPNVKVEDQGEYICRASNDRSA 749 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~----g~~l~~~~~----~~---------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 749 (813)
|++++|.|.+.|.|.|.|+|+|+ |..+..+.. .. ...+.|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999994 444432211 00 11257999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy14896 750 LESSVTISI 758 (813)
Q Consensus 750 ~~~~~~l~V 758 (813)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999988
No 120
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.45 E-value=5.5e-13 Score=108.16 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=65.9
Q ss_pred CceeeC--CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCcc
Q psy14896 190 PYFIKQ--PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQ 265 (813)
Q Consensus 190 P~~~~~--p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~ 265 (813)
|.|... +.++.+.+| ++++|.|.+.|. .|.|.|||++..+. ..++.+ .+++|.|.+. +
T Consensus 2 p~~~~~~~~~~~~v~~g-----~~v~l~C~a~g~-~p~i~W~kng~~l~-----------~~~~~~~~~~~~L~I~~v-~ 63 (91)
T cd05740 2 PVINSNNSVGNQPPEDN-----QPVTLTCEAEGQ-ATYIWWVNNGSLLV-----------PPRLQLSNDNRTLTFNNV-T 63 (91)
T ss_pred CEeecccccCccccccC-----CcEEEEEEeCCC-CCEEEEEECCEECC-----------CCCEEEeCCCCEEEECcC-C
Confidence 445433 345666666 779999999999 99999999997652 112333 3467888885 8
Q ss_pred ccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896 266 VEDRGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 64 ~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 64 RSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred hhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 999999999999999998888888886
No 121
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.45 E-value=3.2e-13 Score=110.04 Aligned_cols=72 Identities=29% Similarity=0.505 Sum_probs=59.3
Q ss_pred CCCeEEEEEEecCCCCCeEEEEeCCcccCC-CceeeecceEEEECCCC-CCCCEEEEEEEEcCCCceEE-EEEEE
Q psy14896 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPR-NAYFENFNRILTIPNVK-VEDQGEYICRASNDRSALES-SVTIS 757 (813)
Q Consensus 686 ~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~-~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~-~~~l~ 757 (813)
.|..+.|.|.+.|.|.|.|+|+|++.++.. ..++...++.|.|.++. .+|+|.|+|.|+|.+|...+ .+.|+
T Consensus 18 ~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 18 TEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred cCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 356899999999999999999999998853 34555556789999985 68999999999999998644 56654
No 122
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.45 E-value=4.5e-13 Score=108.23 Aligned_cols=78 Identities=27% Similarity=0.322 Sum_probs=61.1
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee--------CCeEEEcCCccccCCeeEEEEeecCc
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--------GGNLIINDPRQVEDRGSYHCKASNKF 280 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--------~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (813)
|+.++|.|.+.|.|.|.+.|+|++..+.. . ..++.+. ..+|.|.+. ..+|+|.|+|.|+|..
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~--------~-~~r~~~~~~~~~~~~~s~L~I~~~-~~~D~G~YtC~A~N~~ 70 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP--------E-MSRYLVSTKEVGDEVISTLQILPT-VREDSGFFSCHAINSY 70 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCC--------C-CCcEEEEEecCCCcEEEEEEECCC-CcccCEEEEEEEEcCC
Confidence 68899999999999999999999976521 1 2233321 146788875 8999999999999999
Q ss_pred eeeEeeeeEEeeeeecc
Q psy14896 281 GSIISESVQLAFGFIGE 297 (813)
Q Consensus 281 g~~~s~~~~l~v~~~~~ 297 (813)
|.. +..+.|.|..+|.
T Consensus 71 G~~-~~~~~L~V~~~P~ 86 (88)
T cd05735 71 GED-RGIIQLTVQEPPD 86 (88)
T ss_pred Ccc-eEEEEEEEeCCCC
Confidence 987 6778888876553
No 123
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.44 E-value=5.7e-13 Score=104.95 Aligned_cols=71 Identities=28% Similarity=0.515 Sum_probs=61.1
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCCc--ee--eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRNA--YF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~--~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 760 (813)
+.|.|.+.|.|+|.|+|+|++..|..+. ++ ......|.|.++..+|+|.|+|.|.|..|.++.++.|.|+.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 4799999999999999999999886543 22 22345799999999999999999999999999999999963
No 124
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.43 E-value=5.5e-13 Score=108.31 Aligned_cols=77 Identities=26% Similarity=0.480 Sum_probs=63.8
Q ss_pred cCCCCCCeEEEEEEe-cCCCCCeEEEEeCCcccCCC-ceee-ecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEE
Q psy14896 682 EAPKAGDKVRLECVA-FGYPVPSYNWTRRGSPLPRN-AYFE-NFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTIS 757 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~-~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~ 757 (813)
..+.+|+++.|.|.+ .|.|.|.|.|+|+|..+... .++. ...+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus 6 ~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 6 TQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred EEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 567899999999998 79999999999999988763 2222 225689999999999999999999999985 4566665
Q ss_pred E
Q psy14896 758 I 758 (813)
Q Consensus 758 V 758 (813)
|
T Consensus 86 V 86 (86)
T cd05724 86 V 86 (86)
T ss_pred C
Confidence 4
No 125
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.43 E-value=1.8e-12 Score=106.28 Aligned_cols=92 Identities=41% Similarity=0.806 Sum_probs=71.0
Q ss_pred cceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCC
Q psy14896 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 541 (813)
Q Consensus 462 g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 541 (813)
|+++...|.++.+... ..|+.++|.|.+.|.|.|.|+|+|+|.++. .....++...++.|.|.++...+|
T Consensus 1 ~P~f~~~p~~~~~~~~--~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~--------~~~~~~~~~~~g~L~i~~~~~~~D 70 (94)
T cd05848 1 GPVFVQEPDDAIFPTD--SDEKKVILNCEARGNPVPTYRWLRNGTEID--------TESDYRYSLIDGNLIISNPSEVKD 70 (94)
T ss_pred CCeeEECCCcEEccCC--CCCCEEEEEEEeeecCCCEEEEEECCeECc--------cCCCceEEeeCCeEEEccCCccCc
Confidence 5667777777665321 357899999999999999999999996642 222345666778999988634699
Q ss_pred CceEEEEEEcCceeEEeecEEE
Q psy14896 542 RGSYHCKASNKFGSIISESVQL 563 (813)
Q Consensus 542 ~G~Y~C~a~n~~g~~~s~~~~l 563 (813)
+|.|+|.|.|..|...+..+.|
T Consensus 71 ~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 71 SGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CEEEEEEEEcCCCeEEeccEEE
Confidence 9999999999999987765554
No 126
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.43 E-value=5.3e-13 Score=110.28 Aligned_cols=77 Identities=29% Similarity=0.442 Sum_probs=62.6
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc---eeeecceEEEECCC-----CCCCCEEEEEEEEcC-CCce-E
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA---YFENFNRILTIPNV-----KVEDQGEYICRASND-RSAL-E 751 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~---~~~~~~~~L~i~~v-----~~~d~G~Y~C~a~N~-~G~~-~ 751 (813)
..+.+|+++.|.|.+.|.|.|.|+|+|||..+.... .....++.|.|.++ ..+|+|.|+|.|.|. .|.. +
T Consensus 9 ~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s 88 (95)
T cd05722 9 IVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVS 88 (95)
T ss_pred eEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEE
Confidence 556789999999999999999999999999886543 22223456777776 689999999999999 9986 6
Q ss_pred EEEEEEE
Q psy14896 752 SSVTISI 758 (813)
Q Consensus 752 ~~~~l~V 758 (813)
..+.|+|
T Consensus 89 ~~~~l~v 95 (95)
T cd05722 89 RTARLTV 95 (95)
T ss_pred eeeEEeC
Confidence 6788765
No 127
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.43 E-value=5.9e-13 Score=106.89 Aligned_cols=73 Identities=22% Similarity=0.387 Sum_probs=56.9
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCccccCCeeEEEEeecCceeeE
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSII 284 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~ 284 (813)
|+.+.|.|.+.|.|.|.+.|+|++.++.. .+.++... .++|.|.+. ..+|+|.|+|.|.|..|..
T Consensus 10 G~~v~l~c~~~G~P~P~v~W~k~~~~i~~---------~~~r~~~~~~~~~~~L~I~~~-~~~D~G~Y~c~a~N~~G~~- 78 (86)
T cd05894 10 GNKLRLDVPISGEPAPTVTWSRGDKAFTE---------TEGRVRVESYKDLSSFVIEGA-EREDEGVYTITVTNPVGED- 78 (86)
T ss_pred CCEEEEEeeEeecCCCeEEEEECCEECcc---------CCCeEEEEEcCCeEEEEECCC-ccCcCEEEEEEEEeCCCcE-
Confidence 47799999999999999999999987632 12234432 245777775 8999999999999999987
Q ss_pred eeeeEEee
Q psy14896 285 SESVQLAF 292 (813)
Q Consensus 285 s~~~~l~v 292 (813)
+.++.|.|
T Consensus 79 ~~~~~l~V 86 (86)
T cd05894 79 HASLFVKV 86 (86)
T ss_pred EEEEEEEC
Confidence 56666654
No 128
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.42 E-value=7.1e-13 Score=110.08 Aligned_cols=75 Identities=28% Similarity=0.425 Sum_probs=62.7
Q ss_pred cCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCC--ceeee--------cceEEEECCCCCC-CCEEEEEEEEcCCCc
Q psy14896 682 EAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRN--AYFEN--------FNRILTIPNVKVE-DQGEYICRASNDRSA 749 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~--~~~~~--------~~~~L~i~~v~~~-d~G~Y~C~a~N~~G~ 749 (813)
..+.+|+++.|.|.+.|.|.| .|+|++++..+... .++.. ..++|+|.++..+ |.|.|+|.|.|..|.
T Consensus 11 ~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~ 90 (98)
T cd05758 11 QYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGS 90 (98)
T ss_pred EEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCc
Confidence 557899999999999999999 69999999988653 23321 1247999999995 589999999999999
Q ss_pred eEEEEEE
Q psy14896 750 LESSVTI 756 (813)
Q Consensus 750 ~~~~~~l 756 (813)
+...+.|
T Consensus 91 ~~~~~~L 97 (98)
T cd05758 91 GTAIISL 97 (98)
T ss_pred ccEEEEe
Confidence 9998876
No 129
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.42 E-value=5.3e-13 Score=112.34 Aligned_cols=78 Identities=24% Similarity=0.491 Sum_probs=60.4
Q ss_pred CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-----c-eeeecce---EEEE--CCCCCCCCEEEEEEEEcCCCc
Q psy14896 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-----A-YFENFNR---ILTI--PNVKVEDQGEYICRASNDRSA 749 (813)
Q Consensus 681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-----~-~~~~~~~---~L~i--~~v~~~d~G~Y~C~a~N~~G~ 749 (813)
...+.+|+++.|.|.+.|.|.|.|+|+|+|..+... . .....++ .+.| ..++.+|+|.|+|.|.|.+|.
T Consensus 10 ~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~ 89 (100)
T cd07693 10 DLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGE 89 (100)
T ss_pred eeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccc
Confidence 367889999999999999999999999999988652 1 1111122 2223 234789999999999999999
Q ss_pred -eEEEEEEEE
Q psy14896 750 -LESSVTISI 758 (813)
Q Consensus 750 -~~~~~~l~V 758 (813)
.++.+.|.|
T Consensus 90 ~~s~~~~l~v 99 (100)
T cd07693 90 AVSRNASLEV 99 (100)
T ss_pred eecceEEEEe
Confidence 778888877
No 130
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.42 E-value=8.3e-13 Score=105.83 Aligned_cols=82 Identities=44% Similarity=0.859 Sum_probs=67.6
Q ss_pred CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEcc-CccEEEeeeeecCCeeeEEEEeeeccccCCC
Q psy14896 302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380 (813)
Q Consensus 302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 380 (813)
..+..+.+|+++.|.|..+.|.|.+.+.|++++.++.+..+.|..+.. +|.|.|.+|+.+|+|.|+|.|+|..+..+..
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~~~~ 89 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTKSVF 89 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCCccc
Confidence 456678899999999999999999999999999876544445555554 8999999999999999999999988766554
Q ss_pred CCc
Q psy14896 381 GPF 383 (813)
Q Consensus 381 s~~ 383 (813)
+..
T Consensus 90 ~~~ 92 (96)
T cd05727 90 SKF 92 (96)
T ss_pred CCc
Confidence 433
No 131
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.42 E-value=6.2e-13 Score=103.62 Aligned_cols=72 Identities=26% Similarity=0.502 Sum_probs=57.9
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 287 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~ 287 (813)
|+++.|.|.+.|.|.|.+.|+|++..+. .+.++.. .+++|.|.+. +.+|+|.|+|.|.|..|.. +.+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~----------~~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G~~-~~~ 68 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLT----------NSSRICIWPDGSLEILNV-TKSDEGKYTCFAENFFGKA-NST 68 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcc----------cCCCEEECCCCeEEEccC-ChhHCEEEEEEEECCCCce-EEE
Confidence 5789999999999999999999998652 2233333 4678888885 8999999999999999987 556
Q ss_pred eEEee
Q psy14896 288 VQLAF 292 (813)
Q Consensus 288 ~~l~v 292 (813)
+.|.|
T Consensus 69 ~~l~V 73 (73)
T cd04969 69 GSLSV 73 (73)
T ss_pred EEEEC
Confidence 66654
No 132
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.42 E-value=7.6e-13 Score=108.68 Aligned_cols=86 Identities=34% Similarity=0.662 Sum_probs=69.2
Q ss_pred CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--e--CCeEEEcCCcc
Q psy14896 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--S--GGNLIINDPRQ 265 (813)
Q Consensus 190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~ 265 (813)
|+|...|.++.+.+| +++.|.|.+.|.|.|.+.|+++|..+.. +.++.+ . ..+|.|.+. +
T Consensus 1 P~~~~~~~~~~v~~G-----~~~~l~c~~~~~p~~~v~W~~~~~~l~~----------~~~~~~~~~~~~~~L~I~~v-~ 64 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEG-----ESVTLECEVSGNPPPTVTWYKNGRPLTS----------SQRYQIESDGGSSSLTIKNV-T 64 (90)
T ss_dssp EEEEEESSEEEEETT-----SEEEEEEEEEESSSSEEEEEETTEEEES----------SSSEEEEEETTEEEEEESSE-S
T ss_pred CEEEEecCCEEEeCC-----CEEEEEEEEEeCCCCcccccccccceee----------eeeeeeecccceeEEccCCC-C
Confidence 678999999999888 6699999999999999999999987742 223332 2 345777775 8
Q ss_pred ccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896 266 VEDRGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 65 ~~D~G~Y~C~~~n~~g~~-~~~~~l~V 90 (90)
T PF07679_consen 65 REDAGTYTCVASNSSGEA-TASVNLTV 90 (90)
T ss_dssp GGGSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred hhhCEEEEEEEEECCCEE-EEEEEEEC
Confidence 999999999999999987 56666654
No 133
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.42 E-value=6e-13 Score=102.52 Aligned_cols=69 Identities=26% Similarity=0.513 Sum_probs=55.4
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 291 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~ 291 (813)
++|.|.+.|.|.|.+.|||||.++. .+.++...+++|.|.+. +.+|+|.|+|.|.|..|.. +..+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~----------~~~~~~~~~~~L~I~~v-~~~D~G~YtC~a~N~~g~~-~~~~~~~ 68 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLIS----------EKNRTKKSGHSLTIKDV-TEEDAGNYTVVLTNKQAKL-EKRLTFT 68 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECC----------CCCEEEcCCCEEEECcC-CHHHCEEEEEEEEcCCccE-EEEEEEE
Confidence 4799999999999999999998762 22455566778888886 8999999999999999875 4445554
Q ss_pred e
Q psy14896 292 F 292 (813)
Q Consensus 292 v 292 (813)
+
T Consensus 69 ~ 69 (71)
T cd04976 69 L 69 (71)
T ss_pred E
Confidence 4
No 134
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.42 E-value=6.2e-13 Score=104.76 Aligned_cols=67 Identities=28% Similarity=0.488 Sum_probs=56.6
Q ss_pred EEEEEEecC-CCCCeEEEEeCCcccCCCceee-------ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896 690 VRLECVAFG-YPVPSYNWTRRGSPLPRNAYFE-------NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756 (813)
Q Consensus 690 v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 756 (813)
+.|.|.+.| .|.|.++|+|+|.++..+.+.. .....|.|.+++.+|+|.|+|.|.|.+|.++.++.+
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~~ 75 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTANV 75 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEeC
Confidence 479999999 9999999999999987654321 234689999999999999999999999998887753
No 135
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.41 E-value=7e-13 Score=103.39 Aligned_cols=72 Identities=33% Similarity=0.599 Sum_probs=58.2
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEE
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l 290 (813)
++|.|.+.|.|.|.|.|||++..+.. ..+.++.. .+++|.|.+. +.+|+|.|+|.|.|..|...+..+.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~--------~~~~~~~~~~~g~L~i~~~-~~~D~G~Y~C~a~N~~G~~~s~~a~l 71 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDT--------TSNGRIKQLRSGALQIENS-EESDQGKYECVATNSAGTRYSAPANL 71 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECcc--------CCCCCEEEcCCcEEEECCC-ChhhCEEEEEEEECCCCceEcccEEE
Confidence 47999999999999999999976521 22334443 4677888775 89999999999999999988888888
Q ss_pred ee
Q psy14896 291 AF 292 (813)
Q Consensus 291 ~v 292 (813)
.|
T Consensus 72 ~v 73 (74)
T cd05738 72 YV 73 (74)
T ss_pred EE
Confidence 76
No 136
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.41 E-value=1.4e-12 Score=108.24 Aligned_cols=91 Identities=27% Similarity=0.448 Sum_probs=65.6
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec--ccccccccccccccCCCccEEee----CCeEEEcC
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE--DYVQDRLVANLIDPLSDKRFTLS----GGNLIIND 262 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~--g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~ 262 (813)
+|.|.. |.+..+.+| ++++|.|.+.|.|.|.|.|||+ |..+.. .+...+.++... .++|.|.+
T Consensus 2 ~p~i~~-~~~~~~~~G-----~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~-----~~~~~~~r~~v~~~~~~~~L~I~~ 70 (98)
T cd05870 2 QPHIIQ-LKNETTVEN-----GAATLSCKAEGEPIPEITWKRASDGHTFSE-----GDKSPDGRIEVKGQHGESSLHIKD 70 (98)
T ss_pred CCEEEe-eccEEEcCC-----CcEEEEEecccCCCCeEEEEECCCCceecc-----CCcCcCceEEEeecCCeeEEEEee
Confidence 466654 778888777 6799999999999999999995 333211 011223345543 24688877
Q ss_pred CccccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896 263 PRQVEDRGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 263 ~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
. +.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 71 v-~~~D~G~Y~C~A~N~~G~~-~~~~~l~~ 98 (98)
T cd05870 71 V-KLSDSGRYDCEAASRIGGH-QKSMYLDI 98 (98)
T ss_pred C-CcCCCEEEEEEEeccCCcc-eeEEEEeC
Confidence 5 8999999999999999987 56676654
No 137
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.41 E-value=7.1e-13 Score=109.55 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=57.6
Q ss_pred ccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeE
Q psy14896 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ 289 (813)
Q Consensus 210 ~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~ 289 (813)
+.+.|.|.+.|.|.|.|.|||||.+|.....................+|.|.+. +.+|+|.|+|.|+|..|.+ +.++.
T Consensus 19 ~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v-~~~D~G~Ytc~A~N~~g~~-~~t~~ 96 (101)
T cd05859 19 EVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRA-KEEDSGLYTALAQNEDAVK-SYTFA 96 (101)
T ss_pred CcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeC-CHHHCEEEEEEEEcCCceE-EEEEE
Confidence 669999999999999999999999874321110000000000011356888885 8999999999999999987 66677
Q ss_pred Eeee
Q psy14896 290 LAFG 293 (813)
Q Consensus 290 l~v~ 293 (813)
|.|.
T Consensus 97 l~V~ 100 (101)
T cd05859 97 LQIQ 100 (101)
T ss_pred EEEE
Confidence 7663
No 138
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.41 E-value=1.5e-12 Score=109.81 Aligned_cols=96 Identities=24% Similarity=0.300 Sum_probs=66.1
Q ss_pred CCceeeCCCceee-cCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--------eCCeEE
Q psy14896 189 GPYFIKQPTDVVF-DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--------SGGNLI 259 (813)
Q Consensus 189 ~P~~~~~p~~~~v-~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--------~~~~l~ 259 (813)
+|.|...|....+ ..| ..|++++|.|.+.|.|.|.+.|+|||..|.. .+.++.. ..++|.
T Consensus 4 ~P~~~~~~~~~~~~~~~--~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~---------~~~r~~~~~~~~~~~~~s~L~ 72 (109)
T cd05773 4 APDLQKGPQLRKVASRG--DGSSDANLVCQAQGVPRVQFRWAKNGVPLDL---------GNPRYEETTEHTGTVHTSILT 72 (109)
T ss_pred ccccccCCceEEEEEec--CCCCEEEEEEECcccCCCEEEEEECCEECCC---------CCCeEEEEeeccCccceeEEE
Confidence 4555544443222 222 2357899999999999999999999987631 1223321 134677
Q ss_pred EcCCccccCCeeEEEEeecCceeeEeeeeEEeeeeec
Q psy14896 260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG 296 (813)
Q Consensus 260 i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~~ 296 (813)
|.+....+|.|.|+|.|.|..|.. +..+.|.|...|
T Consensus 73 I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i~L~~~~~p 108 (109)
T cd05773 73 IINVSAALDYALFTCTAHNSLGED-SLDIQLVSTSRP 108 (109)
T ss_pred ECcCCccCCCEEEEEEEEeCCccC-cEEEEEEecCCC
Confidence 777523689999999999999997 677888876554
No 139
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.40 E-value=1.1e-12 Score=100.11 Aligned_cols=68 Identities=22% Similarity=0.439 Sum_probs=51.9
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 288 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~ 288 (813)
|++++|.|.+.|.|.|.|+|+|+|+++. ...++......|.|.+. .|+|.|+|.|.|..|.. ..++
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~----------~~~~~~~~~~~L~i~~~---~d~G~Y~C~A~N~~G~~-~~~a 66 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELT----------KEDEMPVGRNVLELTNI---YESANYTCVAISSLGMI-EATA 66 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECC----------CccceecCccEEEEecc---ccCeeEEEEEEeCCCEE-EEEE
Confidence 5779999999999999999999998652 22233334456777663 58999999999999986 4445
Q ss_pred EE
Q psy14896 289 QL 290 (813)
Q Consensus 289 ~l 290 (813)
.|
T Consensus 67 ~l 68 (69)
T cd05739 67 QV 68 (69)
T ss_pred EE
Confidence 44
No 140
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.40 E-value=1.2e-12 Score=104.93 Aligned_cols=72 Identities=26% Similarity=0.467 Sum_probs=58.5
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCc---cc--CCCc----eeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGS---PL--PRNA----YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~---~l--~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 757 (813)
|++++|.|.+.|.|.|.|+|+|++. .+ .... ........|+|.+++.+|+|.|+|.|.|.+|.....+.|+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999742 11 1111 1112346899999999999999999999999999999997
Q ss_pred E
Q psy14896 758 I 758 (813)
Q Consensus 758 V 758 (813)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 6
No 141
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.40 E-value=8.9e-13 Score=101.84 Aligned_cols=70 Identities=24% Similarity=0.425 Sum_probs=55.3
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 291 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~ 291 (813)
++|.|.+.|.|.|.|.|+|++..+.. ........+++|.|.+. +.+|+|.|+|.|.|..|.+ +.++.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~---------~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 69 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSP---------NRTKKLNNNKTLQLDNV-LESDDGEYVCTAENSEGSA-RHHYTVT 69 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCC---------CceeEEcCCCEEEEccc-CHHhCEEEEEEEEcCCCeE-EEEEEEE
Confidence 47999999999999999999976521 11223345678888885 8999999999999999987 5667766
Q ss_pred e
Q psy14896 292 F 292 (813)
Q Consensus 292 v 292 (813)
|
T Consensus 70 V 70 (71)
T cd05876 70 V 70 (71)
T ss_pred E
Confidence 5
No 142
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.40 E-value=2e-12 Score=107.09 Aligned_cols=92 Identities=28% Similarity=0.398 Sum_probs=66.3
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCc
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPR 264 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~ 264 (813)
.|.|...+....+..| ++++|.|.+.|.|.|.|+|+|++..+.... .....++... .++|.|.+.
T Consensus 2 ~p~i~~~~~~~~~~~g-----~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~L~I~~v- 70 (97)
T cd05869 2 KPKITYVENQTAMELE-----EQITLTCEASGDPIPSITWRTSTRNISSEE-----KTLDGHIVVRSHARVSSLTLKYI- 70 (97)
T ss_pred CceEEEccCceEEEcC-----CCEEEEEEeeEeCCCEEEEEECCccccCCc-----cccCccEEEEcCccEEEEEEecC-
Confidence 3677777666665445 779999999999999999999987653211 0112233332 246778775
Q ss_pred cccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896 265 QVEDRGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
+.+|+|.|+|.|+|..|.. +.++.|.|
T Consensus 71 ~~~D~G~Y~C~A~N~~G~~-~~~~~l~v 97 (97)
T cd05869 71 QYTDAGEYLCTASNTIGQD-SQSMYLEV 97 (97)
T ss_pred ccCcCEEEEEEEecCCCCe-eEEEEEEC
Confidence 8999999999999999987 66666654
No 143
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.40 E-value=1.3e-12 Score=103.23 Aligned_cols=75 Identities=29% Similarity=0.499 Sum_probs=59.1
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 288 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~ 288 (813)
|++++|.|.+.|.|.|.|.|+++|..+.... ...+....++.|.|.+. +.+|+|.|+|.|.|..|.. +..+
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~-------~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~A~N~~G~~-~~~~ 71 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELP-------PDPRRRVDGGTLILSNV-QPNDTAVYQCNASNVHGYL-LANA 71 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCC-------CcceEEccCCEEEECCC-ChhhCEEEEEEEEccCCeE-EEeE
Confidence 5789999999999999999999998763211 11234445677888775 8999999999999999987 5667
Q ss_pred EEee
Q psy14896 289 QLAF 292 (813)
Q Consensus 289 ~l~v 292 (813)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd04978 72 FVHV 75 (76)
T ss_pred EEEE
Confidence 7765
No 144
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.39 E-value=1.7e-12 Score=106.31 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=59.6
Q ss_pred CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeC---CeEEEcCCccccCCeeE
Q psy14896 196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIINDPRQVEDRGSY 272 (813)
Q Consensus 196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~d~G~Y 272 (813)
|..+.+.+| +++.|.|.+.|.|.|+|.|||+|.++.. ....+....+ .+|.|.+. +.+|+|.|
T Consensus 8 p~~v~v~~G-----~~v~L~C~v~G~P~p~v~W~k~g~~l~~--------~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y 73 (92)
T cd05737 8 PDVVTIMEG-----KTLNLTCTVFGDPDPEVSWLKNDQALAL--------SDHYNVKVEQGKYASLTIKGV-SSEDSGKY 73 (92)
T ss_pred CceEEEeCC-----CcEEEEEEEEecCCCeEEEEECCEECcc--------CCCEEEEEcCCCEEEEEEccC-ChhhCEEE
Confidence 455677666 6799999999999999999999987632 1111222221 25777775 89999999
Q ss_pred EEEeecCceeeEeeeeEEe
Q psy14896 273 HCKASNKFGSIISESVQLA 291 (813)
Q Consensus 273 ~C~a~n~~g~~~s~~~~l~ 291 (813)
+|.|.|..|.. +..+.|.
T Consensus 74 ~C~a~N~~G~~-~~~~~v~ 91 (92)
T cd05737 74 GIVVKNKYGGE-TVDVTVS 91 (92)
T ss_pred EEEEEECCCcc-eEEEEEe
Confidence 99999999976 4455554
No 145
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.39 E-value=1.5e-12 Score=101.53 Aligned_cols=70 Identities=29% Similarity=0.512 Sum_probs=53.8
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-eC--C--eEEEcCCccccCCeeEEEEeecCceeeEee
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SG--G--NLIINDPRQVEDRGSYHCKASNKFGSIISE 286 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~--~--~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~ 286 (813)
++|.|.+.|.|.|.|.|+|+|..+.. ...++.+ .+ + +|.|.+. +.+|+|.|+|.|.|..|.+ +.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~---------~~~r~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~-~~ 69 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTY---------NTDRISLYQDNCGRICLLIQNA-NKEDAGWYTVSAVNEAGVV-SC 69 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCC---------CCCcEEEEEcCCCeEEEEECCC-CcccCEEEEEEEEcCCCcE-EE
Confidence 57999999999999999999987621 1223332 12 2 5788775 8999999999999999987 56
Q ss_pred eeEEee
Q psy14896 287 SVQLAF 292 (813)
Q Consensus 287 ~~~l~v 292 (813)
.+.|.|
T Consensus 70 ~~~l~v 75 (75)
T cd05744 70 NARLDV 75 (75)
T ss_pred EEEEeC
Confidence 676654
No 146
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.39 E-value=1.5e-12 Score=104.37 Aligned_cols=77 Identities=45% Similarity=0.906 Sum_probs=64.3
Q ss_pred CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEe-eCccEEEEeecccCCeeEEEEEEeeecCcc
Q psy14896 575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQIDAGNYSCNVQSKVSDTG 651 (813)
Q Consensus 575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 651 (813)
..+..+.+|+.+.|.|..+.|.|.+.|.|+|++.+..+..+.+..+. .+|.|.|.+++.+|+|+|+|.|+|.++..+
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~~ 87 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTKS 87 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCCc
Confidence 34566888999999999999999999999999987544444544455 489999999999999999999999986553
No 147
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.39 E-value=3.1e-12 Score=105.84 Aligned_cols=88 Identities=25% Similarity=0.542 Sum_probs=64.4
Q ss_pred CceeeCC--CceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee--CCeEEEcCCcc
Q psy14896 190 PYFIKQP--TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDPRQ 265 (813)
Q Consensus 190 P~~~~~p--~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~ 265 (813)
|.|...+ .+..+..| +++.|.|.+.|.|.|.|.|+|+|..+.. ...++... ...|.|.+. +
T Consensus 2 p~i~~~~~~~~~~~~~G-----~~v~L~C~~~g~P~p~v~W~k~g~~~~~---------~~~~~~~~~~~~~L~I~~v-~ 66 (95)
T cd05730 2 PTIRARQSEVNATANLG-----QSVTLACDADGFPEPTMTWTKDGEPIES---------GEEKYSFNEDGSEMTILDV-D 66 (95)
T ss_pred CccccCCcccceEEeCC-----CCEEEEEeccEeCCCEEEEEECCEECcC---------CCCEEEEeCCCCEEEECCC-C
Confidence 4444433 34455555 7799999999999999999999986531 12334332 345777775 8
Q ss_pred ccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896 266 VEDRGSYHCKASNKFGSIISESVQLAFG 293 (813)
Q Consensus 266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~ 293 (813)
.+|+|.|+|.|.|..|.. ...+.|.|.
T Consensus 67 ~~D~G~Y~C~a~N~~G~~-~~~~~L~V~ 93 (95)
T cd05730 67 KLDEAEYTCIAENKAGEQ-EAEIHLKVF 93 (95)
T ss_pred hhhCEEEEEEEEcCCCeE-EEEEEEEEE
Confidence 999999999999999987 667777764
No 148
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.39 E-value=2.6e-12 Score=101.60 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=58.6
Q ss_pred CceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEe
Q psy14896 197 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 276 (813)
Q Consensus 197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a 276 (813)
.+..+.+| +.+.|+|.+.|. .+.|.|+|||.+|. .+.++.+.+++|.|.+. +.+|+|.|+|.|
T Consensus 2 ~~~~~~~G-----~~v~l~C~~~~~-~~~v~W~k~g~~l~----------~~~~~~~~~~~L~I~~~-~~~DsG~Y~C~a 64 (79)
T cd04973 2 ESYSAHPG-----DLLQLRCRLRDD-VQSINWTKDGVQLG----------ENNRTRITGEEVQIKDA-VPRDSGLYACVT 64 (79)
T ss_pred CcEEecCC-----CCEEEEEEecCC-CceEEEeeCCcCCC----------CCceEEEeCCEEEECCC-ChhhCEEEEEEE
Confidence 44555555 779999999985 57899999998762 23455666778888886 899999999999
Q ss_pred ecCceeeEeeeeEEe
Q psy14896 277 SNKFGSIISESVQLA 291 (813)
Q Consensus 277 ~n~~g~~~s~~~~l~ 291 (813)
.|..|.. ...+.|+
T Consensus 65 ~n~~g~~-~~~~~v~ 78 (79)
T cd04973 65 SSPSGSD-TTYFSVN 78 (79)
T ss_pred eCCCCcc-cEEEEEe
Confidence 9999875 4444444
No 149
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.39 E-value=2e-12 Score=104.00 Aligned_cols=73 Identities=27% Similarity=0.521 Sum_probs=60.8
Q ss_pred CCeEEEEEEecCC--CCCeEEEEeCCcccCCCce---------eeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEE
Q psy14896 687 GDKVRLECVAFGY--PVPSYNWTRRGSPLPRNAY---------FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT 755 (813)
Q Consensus 687 G~~v~l~C~~~g~--P~p~i~W~k~g~~l~~~~~---------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 755 (813)
|++++|.|.+.|. |.|.|+|++++..+..... .....+.|+|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999999 8899999998876543211 1123468999999999999999999999999999999
Q ss_pred EEEE
Q psy14896 756 ISIQ 759 (813)
Q Consensus 756 l~V~ 759 (813)
|.|.
T Consensus 81 v~v~ 84 (84)
T cd05742 81 VNIH 84 (84)
T ss_pred EEEC
Confidence 8773
No 150
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.39 E-value=3.3e-12 Score=104.43 Aligned_cols=82 Identities=20% Similarity=0.422 Sum_probs=59.9
Q ss_pred CCCceeecCCCccccccEEEEeeeccCCC-CeEEEee-cccccccccccccccCCCccEEee-----CCeEEEcCCcccc
Q psy14896 195 QPTDVVFDLSKRSILNDITLSCYAGGYPN-PSYEWFK-EDYVQDRLVANLIDPLSDKRFTLS-----GGNLIINDPRQVE 267 (813)
Q Consensus 195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~-p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~ 267 (813)
.|.+..+..| ++++|.|.+.|.|. |.|+|+| ||..+. ..+.++... .++|.|.+. +.+
T Consensus 6 ~p~~~~v~~G-----~~v~l~C~v~G~P~~p~i~W~~~~g~~l~---------~~~~r~~v~~~~~~~~~L~I~~v-~~~ 70 (96)
T cd05865 6 VPSQGEISVG-----ESKFFLCQVAGEAKDKDISWFSPNGEKLT---------PNQQRISVVRNDDYSSTLTIYNA-NID 70 (96)
T ss_pred eCCccEECCC-----CeEEEEEEEeCCCCCCEEEEECCCCcCcc---------ccCCeEEEEeCCCCceEEEEecc-Chh
Confidence 4566666666 77999999999995 7999998 675442 112233321 257888885 899
Q ss_pred CCeeEEEEeecCc-eeeEeeeeEEee
Q psy14896 268 DRGSYHCKASNKF-GSIISESVQLAF 292 (813)
Q Consensus 268 d~G~Y~C~a~n~~-g~~~s~~~~l~v 292 (813)
|+|.|+|.|+|.. |.+ +.++.|.|
T Consensus 71 D~G~YtC~A~N~~~g~~-~~s~~l~v 95 (96)
T cd05865 71 DAGIYKCVVSNEDEGES-EATVNVKI 95 (96)
T ss_pred hCEEEEEEEEcCCCCcE-EEEEEEEE
Confidence 9999999999997 655 66677665
No 151
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.39 E-value=1.7e-12 Score=102.34 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=61.5
Q ss_pred ccEEEEeeecc--CCCCeEEEeecccccccccccccccCCCccEEe-----eCCeEEEcCCccccCCeeEEEEeecCcee
Q psy14896 210 NDITLSCYAGG--YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNKFGS 282 (813)
Q Consensus 210 ~~v~l~C~~~g--~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~ 282 (813)
++++|.|.+.+ .+.+.|.|+|||++|.. + ..+.++.. .++.|+|.+. +..|+|.|+|.|+|..+.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~------~-~~~~~~~~~~~~~~~~~L~I~nv-~~~dsG~YtC~a~n~~~~ 72 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDF------Q-KDGDHFERVGGQDSAGDLMIRSI-QLKHAGKYVCMVQTSVDK 72 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcc------c-CCCccEEEeccCCCCCcEEEecC-CHHHCEEEEEEEEcccCc
Confidence 45999999976 45789999999987731 1 23334544 3568999986 999999999999999998
Q ss_pred eEeeeeEEeeeeec
Q psy14896 283 IISESVQLAFGFIG 296 (813)
Q Consensus 283 ~~s~~~~l~v~~~~ 296 (813)
. +.++.|.|..+|
T Consensus 73 ~-~a~a~L~V~~pP 85 (85)
T cd05853 73 L-SAAADLIVRGPP 85 (85)
T ss_pred e-EEEEEEEEecCC
Confidence 8 788999987665
No 152
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.38 E-value=1.4e-12 Score=99.23 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=52.3
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce-eeEeeeeEE
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG-SIISESVQL 290 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g-~~~s~~~~l 290 (813)
++|.|.+.|.|.|++.|+|||.++. ....++...+++|.|.+. +.+|+|.|+|.|+|... ......++|
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~---------~~~~~~~~~~~~L~I~~v-~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAA---------EKCSRYHVDGYSLVIKDV-TEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECC---------CCCcEEEeCCCEEEECcC-CHHHCEEEEEEEEccccceEeeEEEEE
Confidence 4799999999999999999998762 122345555668888885 89999999999999743 333334444
Q ss_pred e
Q psy14896 291 A 291 (813)
Q Consensus 291 ~ 291 (813)
.
T Consensus 71 ~ 71 (72)
T cd07702 71 I 71 (72)
T ss_pred E
Confidence 3
No 153
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.38 E-value=1.3e-12 Score=99.44 Aligned_cols=67 Identities=21% Similarity=0.406 Sum_probs=51.0
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 291 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~ 291 (813)
+.|.|.+.|.|.|.++|||||++|.. ..++ ..+++|.|.+. ..+|+|.|+|.|.|..|.. +...+++
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~----------~~~~-~~~~~L~I~~v-~~~D~G~YtC~a~N~~G~~-~~~~t~~ 67 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVL----------NHTF-KRGVHLTIYEV-TEKDAGNYTVVLTNPITKE-EQRHTFQ 67 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCC----------CCEE-ccCCEEEECcC-CHHHCEEEEEEEEECCCce-eeEEEEE
Confidence 46999999999999999999987632 1122 23457888775 8999999999999999966 3334333
No 154
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.38 E-value=2.3e-12 Score=103.20 Aligned_cols=78 Identities=26% Similarity=0.455 Sum_probs=59.5
Q ss_pred ccEEEEeeeccCCCC--eEEEeecccccccccccccccCCCccE---Ee--eCCeEEEcCCccccCCeeEEEEeecCcee
Q psy14896 210 NDITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLSDKRF---TL--SGGNLIINDPRQVEDRGSYHCKASNKFGS 282 (813)
Q Consensus 210 ~~v~l~C~~~g~P~p--~v~W~k~g~~l~~~~~~~~~~~~~~~~---~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~ 282 (813)
+.++|.|.+.|.|.| .|.|+|||..|... ..+.++ .. ..++|.|.+. +.+|+|.|+|.|.|..|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~-------~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~YtC~A~n~~g~ 72 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLD-------KPNGHYRRMEVKETIGDLVIVNA-QLSHAGTYTCTAQTVVDS 72 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEcccc-------CCCCcEEEEEecceEeEEEEccC-ChhhCeEEEEEEecCCCC
Confidence 359999999999987 68999999876321 112222 11 2468888886 899999999999999998
Q ss_pred eEeeeeEEeeeeec
Q psy14896 283 IISESVQLAFGFIG 296 (813)
Q Consensus 283 ~~s~~~~l~v~~~~ 296 (813)
. +.++.|.|..+|
T Consensus 73 ~-~~~~~L~V~~~P 85 (85)
T cd05854 73 A-SASATLVVRGPP 85 (85)
T ss_pred E-EEEEEEEEECCC
Confidence 8 778888887644
No 155
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.38 E-value=1.7e-12 Score=101.66 Aligned_cols=70 Identities=31% Similarity=0.582 Sum_probs=52.9
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCccc----cCCeeEEEEeecCceeeEe
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQV----EDRGSYHCKASNKFGSIIS 285 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~----~d~G~Y~C~a~n~~g~~~s 285 (813)
+.|.|++.|+|.|+|+|+|||.++. .....++.+ .+++|.|... .. .|+|.|+|.|+|..|.+.+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~--------~~~~~~~~~~~~~g~l~i~~~-~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFD--------IDKDPKVTMKPNTGTLVINIM-NGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECC--------CcCCCCEEEeCCCceEEEecc-ccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 5799999999999999999998652 122233333 4677777643 32 4899999999999999888
Q ss_pred eeeEE
Q psy14896 286 ESVQL 290 (813)
Q Consensus 286 ~~~~l 290 (813)
..+.|
T Consensus 72 ~~~~~ 76 (77)
T cd05874 72 NNIVI 76 (77)
T ss_pred eEEEE
Confidence 77765
No 156
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.38 E-value=2.8e-12 Score=104.69 Aligned_cols=84 Identities=24% Similarity=0.373 Sum_probs=61.4
Q ss_pred eCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE--eeCCeEEEcCCccccCCee
Q psy14896 194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT--LSGGNLIINDPRQVEDRGS 271 (813)
Q Consensus 194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~d~G~ 271 (813)
..|.+..+.+| +++.|.|.+.|+|.|.|.|+|+|..+... ...... ...++|.|.+. +.+|.|.
T Consensus 5 ~~p~~~~v~~G-----~~v~l~C~~~G~P~p~v~W~~~g~~~~~~--------~~~~~~~~~~~~~L~I~~v-~~~D~g~ 70 (90)
T cd04972 5 DGPNATVVYEG-----GTATIRCTAEGSPLPKVEWIIAGLIVIQT--------RTDTLETTVDIYNLQLSNI-TSETQTT 70 (90)
T ss_pred cCCcCEEEcCC-----CcEEEEEEEEEcCCCeEEEEECCEEccCC--------ccEEEEecCCEEEEEEecC-CcccCEE
Confidence 34566666666 77999999999999999999999865211 110111 12346777775 8999999
Q ss_pred EEEEeecCceeeEeeeeEEee
Q psy14896 272 YHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 272 Y~C~a~n~~g~~~s~~~~l~v 292 (813)
|+|.|.|..|.. +..+.|.|
T Consensus 71 Y~C~A~N~~G~~-~~~~~L~v 90 (90)
T cd04972 71 VTCTAENPVGQA-NVSVQVTV 90 (90)
T ss_pred EEEEEECCCCce-eEEEEEeC
Confidence 999999999987 56666653
No 157
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.38 E-value=2.7e-12 Score=104.27 Aligned_cols=83 Identities=28% Similarity=0.559 Sum_probs=65.1
Q ss_pred CCCceeecCCCccccccEEEEeee-ccCCCCeEEEeecccccccccccccccCCCccEE-eeCCeEEEcCCccccCCeeE
Q psy14896 195 QPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSY 272 (813)
Q Consensus 195 ~p~~~~v~~g~~~~g~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G~Y 272 (813)
+|.+..+.+| +++.|.|.+ .|.|.|.+.|+|+|..+.. . ..++. ..+++|.|.+. +.+|+|.|
T Consensus 2 ~p~~~~~~~G-----~~v~l~C~~~~g~p~p~i~W~k~g~~~~~--------~-~~~~~~~~~~~L~I~~~-~~~D~G~Y 66 (86)
T cd05724 2 EPSDTQVAVG-----EMAVLECSPPRGHPEPTVSWRKDGQPLNL--------D-NERVRIVDDGNLLIAEA-RKSDEGTY 66 (86)
T ss_pred CCccEEEeCC-----CCEEEEEECCCCCCCCEEEEEECCEECCC--------C-CCCEEEccCCEEEEeEC-CcccCEEE
Confidence 3566777666 779999998 7999999999999986531 1 22333 34678888885 89999999
Q ss_pred EEEeecCceeeEeeeeEEee
Q psy14896 273 HCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 273 ~C~a~n~~g~~~s~~~~l~v 292 (813)
+|.|.|..|...+..+.|.|
T Consensus 67 ~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 67 KCVATNMVGERESAAARLSV 86 (86)
T ss_pred EEEEEeccCceeeeeEEEEC
Confidence 99999999998777777764
No 158
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.38 E-value=2e-12 Score=101.26 Aligned_cols=72 Identities=28% Similarity=0.618 Sum_probs=54.7
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCc--c-ccCCeeEEEEeecCceeeEee
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPR--Q-VEDRGSYHCKASNKFGSIISE 286 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~--~-~~d~G~Y~C~a~n~~g~~~s~ 286 (813)
+.|.|++.|+|.|.|+|+|+|..+. ...+.++.+ .+++|.|.... . .+|+|.|+|.|+|..|.+.+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~--------~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFN--------VAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEcc--------CcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4799999999999999999997542 123334443 47788887531 2 357999999999999999888
Q ss_pred eeEEe
Q psy14896 287 SVQLA 291 (813)
Q Consensus 287 ~~~l~ 291 (813)
.+.|+
T Consensus 73 ~~~~~ 77 (77)
T cd05875 73 KILLQ 77 (77)
T ss_pred EEEEC
Confidence 77763
No 159
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.37 E-value=3.5e-12 Score=103.12 Aligned_cols=82 Identities=26% Similarity=0.499 Sum_probs=62.4
Q ss_pred eCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec-ccccccccccccccCCCccEEee-CC---eEEEcCCccccC
Q psy14896 194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLS-GG---NLIINDPRQVED 268 (813)
Q Consensus 194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~-~~---~l~i~~~~~~~d 268 (813)
..|.+..+.+| +++.|.|.+.|.|. .+.|||+ |..+ ..+.++.+. ++ +|.|.+. +.+|
T Consensus 5 ~~~~~~~v~~G-----~~v~l~C~~~G~P~-~v~W~k~~g~~~----------~~~~r~~~~~~g~~~~L~I~~v-~~~D 67 (92)
T cd05866 5 ISLSKVELSVG-----ESKFFTCTAIGEPE-SIDWYNPQGEKI----------VSSQRVVVQKEGVRSRLTIYNA-NIED 67 (92)
T ss_pred EEecceEEcCC-----CeEEEEEEEEEeCC-eEEEEeCCCeEe----------cCCCCEEEEeCCCeeEEEEecC-ChHH
Confidence 44667777777 67999999999998 9999985 5443 223344443 44 6888885 8999
Q ss_pred CeeEEEEeecCceeeEeeeeEEee
Q psy14896 269 RGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
+|.|+|.|+|..|.....++.|.+
T Consensus 68 ~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 68 AGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred CEEEEEEEEcCCCcEEEEEEEEEE
Confidence 999999999999987666777664
No 160
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.37 E-value=2e-12 Score=101.69 Aligned_cols=66 Identities=30% Similarity=0.565 Sum_probs=52.7
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCCc--ee--eecceEEEECCCCC----CCCEEEEEEEEcCCCceEE-EEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRNA--YF--ENFNRILTIPNVKV----EDQGEYICRASNDRSALES-SVT 755 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~--~~--~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~G~~~~-~~~ 755 (813)
++|.|.+.|.|.|.|+|+|||.++.... ++ ....+.|.|.++.. +|+|.|+|+|.|.+|...+ .+.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIH 75 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccE
Confidence 4799999999999999999999885432 22 23467899998854 7999999999999998654 444
No 161
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.37 E-value=1.6e-12 Score=102.19 Aligned_cols=71 Identities=34% Similarity=0.691 Sum_probs=54.7
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCc---cccCCeeEEEEeecCceeeEee
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPR---QVEDRGSYHCKASNKFGSIISE 286 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~---~~~d~G~Y~C~a~n~~g~~~s~ 286 (813)
++|.|.+.|+|.|+|+|+|||..+.. ..+.++.. .+++|.|.... ..+|+|.|+|.|+|..|.+.+.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~--------~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDP--------EKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCC--------CCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcc
Confidence 57999999999999999999986531 22333433 36888887641 2379999999999999998887
Q ss_pred eeEE
Q psy14896 287 SVQL 290 (813)
Q Consensus 287 ~~~l 290 (813)
.+.|
T Consensus 73 ~~~l 76 (77)
T cd05733 73 EIHL 76 (77)
T ss_pred ccEE
Confidence 7765
No 162
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.37 E-value=2.4e-12 Score=99.08 Aligned_cols=69 Identities=33% Similarity=0.555 Sum_probs=53.7
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 291 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~ 291 (813)
++|.|.+.|.|.|.+.|+|++..+. .+......+++|.|.+. +.+|+|.|+|.|.|..|.. +..+.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~----------~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELP----------KGRAEILDDKSLKIRNV-TAGDEGSYTCEAENMVGKI-EASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCC----------CCcEEEeeCCEEEECcC-ChhHCEEEEEEEEcCCCcE-EEEEEEE
Confidence 5799999999999999999986541 12222235677888885 8999999999999999987 5566665
Q ss_pred e
Q psy14896 292 F 292 (813)
Q Consensus 292 v 292 (813)
|
T Consensus 69 V 69 (69)
T cd05725 69 V 69 (69)
T ss_pred C
Confidence 4
No 163
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.37 E-value=2.9e-12 Score=100.36 Aligned_cols=67 Identities=33% Similarity=0.576 Sum_probs=52.0
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCC--cee--eecceEEEECCCCCC----CCEEEEEEEEcCCCceEE-EEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRN--AYF--ENFNRILTIPNVKVE----DQGEYICRASNDRSALES-SVTI 756 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~--~~~--~~~~~~L~i~~v~~~----d~G~Y~C~a~N~~G~~~~-~~~l 756 (813)
+.|.|.+.|.|.|+|+|+|||.++... .++ ...+++|.|..+..+ |.|.|+|.|.|.+|...+ .+.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 479999999999999999999987422 222 334678889887643 789999999999998655 4443
No 164
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.36 E-value=2.4e-12 Score=102.18 Aligned_cols=69 Identities=33% Similarity=0.523 Sum_probs=54.3
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccC--------CCceee-ecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLP--------RNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISI 758 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~--------~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V 758 (813)
|+|.|.+.|.|.|.|+|+|++.... .+.++. ..+++|.|.++..+|+|.|+|.|.|..|.+ +..+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 5799999999999999999754211 122222 235789999999999999999999999986 66777764
No 165
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.36 E-value=1.8e-12 Score=99.62 Aligned_cols=67 Identities=34% Similarity=0.640 Sum_probs=53.7
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEE
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l 290 (813)
|.|.|.+.|.|.|.|+|+|+|..+. ...++.+ .+++|.|.+. +.+|+|.|+|.|.|..|.+ +.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~----------~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~-~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVT----------ESGKFHISPEGYLAIRDV-GVADQGRYECVARNTIGYA-SVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECC----------CCCCEEECCCCEEEECcC-ChhhCEEEEEEEECCCCcE-EEEEEe
Confidence 5799999999999999999997652 2334444 3678888885 8999999999999999987 555544
No 166
>PF00059 Lectin_C: Lectin C-type domain; InterPro: IPR001304 Lectins occur in plants, animals, bacteria and viruses. Initially described for their carbohydrate-binding activity [], they are now recognised as a more diverse group of proteins, some of which are involved in protein-protein, protein-lipid or protein-nucleic acid interactions []. There are at least twelve structural families of lectins: C-type lectins, which are Ca+-dependent. S-type (galectins), a widespread family of glycan-binding proteins []. I-type, which have an immunoglobulin-like fold and can recognise sialic acids, other sugars and glycosaminoglycans []. P-type, which bind phosphomannosyl receptors []. Pentraxins []. (Trout) egg lectins. Calreticulin and calnexin, which act as molecular chaperones of the endoplasmic reticulum []. ERGIC-53 and VIP-36 []. Discoidins []. Eel aggutinins (fucolectins) []. Annexin lectins []. Fibrinogen-type lectins, which includes ficolins, tachylectins 5A and 5B, and Limax flavus (Spotted garden slug) agglutinin (these proteins have clear distinctions from one another, but they share a homologous fibrinogen-like domain used for carbohydrate binding). Also unclassified orphan lectins, including amphoterin, Cel-II, complement factor H, thrombospondin, sailic acid-binding lectins, adherence lectin, and cytokins (such as tumour necrosis factor and several interleukins). C-type lectins can be further divided into seven subgroups based on additional non-lectin domains and gene structure: (I) hyalectans, (II) asialoglycoprotein receptors, (III) collectins, (IV) selectins, (V) NK group transmembrane receptors, (VI) macrophage mannose receptors, and (VII) simple (single domain) lectins []. Therefore, lectins are a diverse group of proteins, both in terms of structure and activity. Carbohydrate binding ability may have evolved independently and sporadically in numerous unrelated families, where each evolved a structure that was conserved to fulfil some other activity and function. In general, animal lectins act as recognition molecules within the immune system, their functions involving defence against pathogens, cell trafficking, immune regulation and the prevention of autoimmunity [].; GO: 0005488 binding; PDB: 1T8D_A 2H2T_B 1T8C_A 2H2R_A 1TN3_A 1RJH_A 1HTN_A 3G8K_B 2E3X_B 1UMR_D ....
Probab=99.36 E-value=2.8e-12 Score=109.11 Aligned_cols=102 Identities=23% Similarity=0.317 Sum_probs=80.6
Q ss_pred cCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCcc--ccccCCCCCCc
Q psy14896 48 LKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNEL--DAAFLPEPADN 125 (813)
Q Consensus 48 ~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~--~~~~~~~p~~~ 125 (813)
+++|.+|++.|+.+||+|+.|++.+|++||..++. ....+|||+ +....+.|.|.||+..... ...| +...
T Consensus 2 ~~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~~~---~~~~~Wig~-~~~~~~~~~w~~~~~~~~~~~~~~w---~~~~ 74 (105)
T PF00059_consen 2 PMTWEEAQQYCQSMGAHLASINSEEENDFIQSQLK---SNESYWIGL-DSDNNGTWKWIDGSPNSPENFYTNW---NPPN 74 (105)
T ss_dssp EEEHHHHHHHHHHTTSEEB-GSSHHHHHHHHHHHH---SSSEEEEEE-ESSSTSEEEETTSSBSSSTTBSGCB---SSGG
T ss_pred CCCHHHHHHHHhcCCCEEeEeCCHHHhhhhhhccc---ccceeeeee-eccccceeccccCCCcccccccccc---ccCC
Confidence 37999999999999999999999999999999986 456899999 6667789999999988752 1123 3333
Q ss_pred ccCCeEEEEeeccccccceeeccCCCceeeeeee
Q psy14896 126 VQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEA 159 (813)
Q Consensus 126 ~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~ 159 (813)
....|+.| . ......|.+..|.....|+|++
T Consensus 75 ~~~~C~~~-~--~~~~~~w~~~~C~~~~~fiCek 105 (105)
T PF00059_consen 75 DSENCAYI-Y--YSSSGKWNDVPCSEKYPFICEK 105 (105)
T ss_dssp SSEEEEEE-G--CSTTTEEEEEETTSEEEEEEEE
T ss_pred CCCCeEEE-E--EcCCCeEEeeCCCCCeeEEeeC
Confidence 46899998 2 2224566699999999999985
No 167
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.35 E-value=3.3e-12 Score=104.24 Aligned_cols=76 Identities=26% Similarity=0.485 Sum_probs=60.3
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEe-CCcccCCCceee-----ecceEEEECCCCCCCCEEEEEEEEcCCC-ceEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRS-ALESSV 754 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k-~g~~l~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~ 754 (813)
..+..|+++.|.|.+.|.|+ .++|++ +|..+....++. ...++|+|.+++.+|+|.|+|.|.|..| ..++++
T Consensus 10 ~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv 88 (92)
T cd04977 10 GEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATV 88 (92)
T ss_pred EEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEE
Confidence 56789999999999999974 999998 666665433221 1235899999999999999999999975 467777
Q ss_pred EEEE
Q psy14896 755 TISI 758 (813)
Q Consensus 755 ~l~V 758 (813)
.|.|
T Consensus 89 ~l~~ 92 (92)
T cd04977 89 NLKI 92 (92)
T ss_pred EEEC
Confidence 7764
No 168
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.35 E-value=4.2e-12 Score=99.81 Aligned_cols=71 Identities=30% Similarity=0.672 Sum_probs=53.9
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCccccCCeeEEEEeecCceeeE-eeee
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSII-SESV 288 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~-s~~~ 288 (813)
|+|.|.+.|.|.|.|+|||+|.++.. ...++.. .+++|.|.+. +.+|+|.|+|.|.|..|... +..+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~---------~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~~s~~~~ 70 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSD---------GQGNYSVSSKERTLTLRSA-GPDDSGLYYCCAHNAFGSVCSSQNF 70 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCC---------CCccEEEeCCCCEEEEeeC-CcccCEEEEEEEEeCCCeEeeCceE
Confidence 57999999999999999999986621 1223333 2457888875 89999999999999999874 2355
Q ss_pred EEee
Q psy14896 289 QLAF 292 (813)
Q Consensus 289 ~l~v 292 (813)
+|.|
T Consensus 71 ~l~v 74 (77)
T cd05760 71 TLSI 74 (77)
T ss_pred EEEE
Confidence 5554
No 169
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.35 E-value=3.2e-12 Score=103.40 Aligned_cols=78 Identities=24% Similarity=0.500 Sum_probs=56.8
Q ss_pred ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896 208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 287 (813)
Q Consensus 208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~ 287 (813)
+|+.+.|.|.+.|.|.|.+.|||+|.++..... ....+......+|.|.+. +.+|+|.|+|.|.|..|.+ ..+
T Consensus 8 ~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~-----~~~~~~~~~~~~l~i~~~-~~~D~G~Y~C~a~N~~G~~-~~~ 80 (85)
T cd05857 8 AANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHR-----IGGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGSI-NHT 80 (85)
T ss_pred CCCEEEEEEEcCCCCCCEEEEEECCEECCCCCc-----eeeeEEeCCceEEEEccC-CcccCEEEEEEEEeCCCEE-EEE
Confidence 347799999999999999999999987632110 000111122456777775 8999999999999999987 566
Q ss_pred eEEee
Q psy14896 288 VQLAF 292 (813)
Q Consensus 288 ~~l~v 292 (813)
++|.|
T Consensus 81 ~~l~v 85 (85)
T cd05857 81 YHLDV 85 (85)
T ss_pred EEEEC
Confidence 76654
No 170
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.34 E-value=6.5e-12 Score=104.34 Aligned_cols=91 Identities=27% Similarity=0.386 Sum_probs=65.3
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCc
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPR 264 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~ 264 (813)
+|.|. .+.+..+.+| ++++|.|.+.|.|.|.|.|+|++..+.... .....++... .++|.|.+.
T Consensus 2 ~P~i~-~~~~~~~~~g-----~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~I~~v- 69 (96)
T cd05732 2 QPKIT-YLENQTAVEL-----EQITLTCEAEGDPIPEITWRRATRNFSEGD-----KSLDGRIVVRGHARVSSLTLKDV- 69 (96)
T ss_pred Cccce-ecCceeEecC-----CcEEEEEEEeEcCCCcEEEEECCcccCCCC-----ccccceEEEeCCccEEEEEECcC-
Confidence 46664 4566777666 679999999999999999999986542211 0112233322 246777775
Q ss_pred cccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896 265 QVEDRGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 265 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
+.+|+|.|+|.|+|..|.. +.++.|.|
T Consensus 70 ~~~D~G~Y~C~a~N~~G~~-~~s~~l~v 96 (96)
T cd05732 70 QLTDAGRYDCEASNRIGGD-QQSMYLEV 96 (96)
T ss_pred CcCcCEEeEEEEEeCCCCc-EEEEEEeC
Confidence 8999999999999999987 66666654
No 171
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.34 E-value=5.1e-12 Score=98.90 Aligned_cols=69 Identities=22% Similarity=0.422 Sum_probs=53.9
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSIISES 287 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~ 287 (813)
+.|.|.+.|.|.|.+.|+|+|..+. .+.++.+. .++|.|.+. +.+|+|.|+|.|.|..|.+ +.+
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~----------~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~-~~~ 69 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLK----------LSGRVQIETTASSTSLVIKNA-ERSDSGKYTLTLKNPAGEK-SAT 69 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcC----------CCCeEEEEECCCeEEEEECCC-CcCcCEEEEEEEECCCccE-EEE
Confidence 7899999999999999999998762 22233322 345777775 8999999999999999987 666
Q ss_pred eEEee
Q psy14896 288 VQLAF 292 (813)
Q Consensus 288 ~~l~v 292 (813)
+.|.|
T Consensus 70 ~~l~V 74 (74)
T cd05748 70 INVKV 74 (74)
T ss_pred EEEEC
Confidence 66654
No 172
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.34 E-value=3.8e-12 Score=103.74 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=57.9
Q ss_pred cccEEEEeeecc-----CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896 209 LNDITLSCYAGG-----YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283 (813)
Q Consensus 209 g~~v~l~C~~~g-----~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~ 283 (813)
|+.+.|.|.+.| .|.|.|.|||+|..+.. ......++...+++|.|.+. +.+|+|.|+|.|+|..|..
T Consensus 14 G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~------~~~~~~r~~~~~~~L~I~~~-~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 14 GEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPI------PTEERSRMHQQKDLLWFLPA-ALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred CCCeEEECCCCCcccccCCCceEEEEEcCCCCcc------cccccceeeecCCeEEEccC-CcccCeEEEEEEcCCCccE
Confidence 377999999998 79999999999975421 11233455555778888875 8999999999999999976
Q ss_pred EeeeeEEee
Q psy14896 284 ISESVQLAF 292 (813)
Q Consensus 284 ~s~~~~l~v 292 (813)
+..+.|.|
T Consensus 87 -~~~~~L~v 94 (94)
T cd05756 87 -KVSISLTV 94 (94)
T ss_pred -EEEEEEEC
Confidence 44566553
No 173
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.33 E-value=4.6e-12 Score=99.24 Aligned_cols=63 Identities=32% Similarity=0.551 Sum_probs=49.9
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccC--CCceee--ecceEEEECCCC----CCCCEEEEEEEEcCCCceEE
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLP--RNAYFE--NFNRILTIPNVK----VEDQGEYICRASNDRSALES 752 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~--~~~~~~--~~~~~L~i~~v~----~~d~G~Y~C~a~N~~G~~~~ 752 (813)
+.|.|.+.|+|.|.|+|+|+|.++. .+.++. ..+++|.|..+. .+|+|.|+|.|.|.+|...+
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 4799999999999999999998763 233332 346789998864 24799999999999997654
No 174
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.33 E-value=5.4e-12 Score=99.00 Aligned_cols=72 Identities=32% Similarity=0.570 Sum_probs=54.3
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--eCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeE
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ 289 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~ 289 (813)
++|.|.+.|.|.|.|+|+|+|..... .....++.. .++.|.|.+. +.+|+|.|+|.|.|..|.. +..+.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~-------~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~A~N~~G~~-~~~~~ 71 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFP-------AARERRMHVMPEDDVFFIVDV-KIEDTGVYSCTAQNTAGSI-SANAT 71 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCC-------cccccceEEecCCCEEEEeeC-CcccCEEEEEEEEcCCCEE-EeeEE
Confidence 47999999999999999999864211 122233333 3456777675 8999999999999999987 66777
Q ss_pred Eee
Q psy14896 290 LAF 292 (813)
Q Consensus 290 l~v 292 (813)
|.|
T Consensus 72 l~V 74 (75)
T cd05763 72 LTV 74 (75)
T ss_pred EEE
Confidence 776
No 175
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.33 E-value=3.9e-12 Score=98.62 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=50.4
Q ss_pred EEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896 214 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 291 (813)
Q Consensus 214 l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~ 291 (813)
|.|.+.|+|.|+|+|||||++|........... ........++|.|.++ ..+|+|.|+|+|+|..|++ +.++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~-~~~~~~~~~~L~i~~~-~~~D~G~YtC~A~N~~G~~-~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIH-VINNTEYHGCLQLDNP-THLNNGIYTLVAKNEYGED-EKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeE-eecccceEEEEEECCC-CcccCEEEEEEEEcCCccc-ceEEEee
Confidence 789999999999999999998743210000000 0000012346777775 7999999999999999976 4445443
No 176
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.33 E-value=6.4e-12 Score=98.38 Aligned_cols=73 Identities=32% Similarity=0.512 Sum_probs=55.8
Q ss_pred cccEEEEeeeccCCCCeEEEeec-ccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 287 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~ 287 (813)
|+++.|.|.+.|.|.|.+.|+++ +..+. .........+++|.|... +.+|.|.|+|.|.|..|.+ +..
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~---------~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~a~N~~G~~-~~~ 69 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLIS---------NSSRTLVYDNGTLDILIT-TVKDTGSFTCIASNAAGEA-TAT 69 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEec---------CCCeEEEecCCEEEEEEC-ChhhCEEEEEEEECCCCeE-EEE
Confidence 57899999999999999999985 44321 112222345788888875 8999999999999999987 666
Q ss_pred eEEee
Q psy14896 288 VQLAF 292 (813)
Q Consensus 288 ~~l~v 292 (813)
+.|.|
T Consensus 70 ~~l~v 74 (74)
T cd05764 70 VELHI 74 (74)
T ss_pred EEEEC
Confidence 66654
No 177
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.32 E-value=4.3e-12 Score=102.59 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=64.4
Q ss_pred cCCCCCCeEEEEEEecC-----CCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFG-----YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g-----~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 756 (813)
+.+.+|+++.|.|...+ +|.|.++||||+.++....+....++.|.|.++..+|+|.|+|.|.|.+|.....++.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~ 84 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR 84 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence 56788999999998753 3578999999999998665443367899999999999999999999999987766655
Q ss_pred EEE
Q psy14896 757 SIQ 759 (813)
Q Consensus 757 ~V~ 759 (813)
++.
T Consensus 85 t~~ 87 (92)
T cd05757 85 TIS 87 (92)
T ss_pred EEE
Confidence 553
No 178
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.32 E-value=6.3e-12 Score=98.92 Aligned_cols=67 Identities=21% Similarity=0.473 Sum_probs=54.2
Q ss_pred EEEEEEecC-CCCCeEEEEeCCcccCCCc----eee----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896 690 VRLECVAFG-YPVPSYNWTRRGSPLPRNA----YFE----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756 (813)
Q Consensus 690 v~l~C~~~g-~P~p~i~W~k~g~~l~~~~----~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 756 (813)
+.|.|.+.+ .|.|.++|||+|++|.... ++. ...+.|.|.++..+|+|.|+|.|+|..|.++.++.+
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~ 76 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV 76 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence 479999875 6888999999999886432 111 234679999999999999999999999998887753
No 179
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.31 E-value=1.7e-11 Score=98.04 Aligned_cols=73 Identities=26% Similarity=0.563 Sum_probs=58.8
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCcccCCCc----e----eeecceEEEECCCCCCCCEEEEEEEEcCCC--ceEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA----Y----FENFNRILTIPNVKVEDQGEYICRASNDRS--ALESSVTI 756 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~----~----~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G--~~~~~~~l 756 (813)
|++++|.|.+.|.|.|.++|+++++...... . .....++|+|.+++.+|+|.|+|.|+|..+ ..+.++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999999999999999876432211 1 112256899999999999999999999877 67888888
Q ss_pred EEE
Q psy14896 757 SIQ 759 (813)
Q Consensus 757 ~V~ 759 (813)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 885
No 180
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.31 E-value=9.5e-12 Score=100.30 Aligned_cols=78 Identities=27% Similarity=0.404 Sum_probs=59.6
Q ss_pred ccEEEEeeeccCCCC--eEEEeecccccccccccccccCCCccE-----EeeCCeEEEcCCccccCCeeEEEEeecCcee
Q psy14896 210 NDITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLSDKRF-----TLSGGNLIINDPRQVEDRGSYHCKASNKFGS 282 (813)
Q Consensus 210 ~~v~l~C~~~g~P~p--~v~W~k~g~~l~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~ 282 (813)
++++|.|.+.|.|.| .+.|+|||..|... ..+.++ ...+++|.|.+. +.+|+|.|+|.|.|..|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~-------~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~g~ 72 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFD-------KDGGHYRRVGGKDSNGDLMIRNA-QLKHAGKYTCTAQTVVDS 72 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeecc-------CCCccEEEEecccccceEEEccC-CHHhCeeeEEEEecCCCc
Confidence 459999999999988 67999999876321 111111 123678999886 899999999999999998
Q ss_pred eEeeeeEEeeeeec
Q psy14896 283 IISESVQLAFGFIG 296 (813)
Q Consensus 283 ~~s~~~~l~v~~~~ 296 (813)
. +.++.|.|..+|
T Consensus 73 ~-~~~~~l~V~~pP 85 (85)
T cd04970 73 L-SASADLIVRGPP 85 (85)
T ss_pred E-EEEEEEEEECCC
Confidence 7 778888887654
No 181
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.31 E-value=9.5e-12 Score=100.38 Aligned_cols=73 Identities=38% Similarity=0.638 Sum_probs=62.6
Q ss_pred cCCCCCCeEEEEEEecC-CCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 756 (813)
..+.+|++++|.|.+.+ .|.|.|.|++++..+.... ...++.|.|.+++.+|+|.|.|.|.|..|..++++.|
T Consensus 11 ~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 11 QEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA--MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred eEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc--cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 56789999999999974 7889999999998765432 2235789999999999999999999999999998876
No 182
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.31 E-value=8.4e-12 Score=102.08 Aligned_cols=68 Identities=32% Similarity=0.547 Sum_probs=56.4
Q ss_pred CCCCeEEEEEEecCCCCCeEEEEeCCcccCC--CceeeecceEEEECCCC-CCCCEEEEEEEEcCCCceEE
Q psy14896 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPR--NAYFENFNRILTIPNVK-VEDQGEYICRASNDRSALES 752 (813)
Q Consensus 685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~--~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~ 752 (813)
..|+++.|.|.+.|+|.|.|+|+|++..+.. ..++...++.|.|.++. .+|+|.|+|.|+|.+|...+
T Consensus 17 ~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 17 SDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 4567899999999999999999999998843 33444456789999887 49999999999999997654
No 183
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.31 E-value=6.9e-12 Score=98.91 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=50.3
Q ss_pred EEeeeccCCCCeEEEeecccccccccccccccCCC-ccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896 214 LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD-KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 291 (813)
Q Consensus 214 l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~ 291 (813)
|.|.+.|+|.|+|+|||||++|............. .......+.|.|.++ +.+|+|.|+|.|+|..|.+ +.++.|.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~YtC~A~N~~G~~-~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNP-THVNNGNYTLVASNEYGQD-SKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCC-CcccCeEEEEEEEeCCCCe-eeEEEee
Confidence 78999999999999999998774221000000000 000011346888775 8999999999999999987 4444443
No 184
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.30 E-value=1.7e-11 Score=109.46 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=79.0
Q ss_pred cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCC-CC-C
Q psy14896 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY-PV-P 702 (813)
Q Consensus 625 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~-P~-p 702 (813)
+|+|.+++.+|+|.|.|.+.+..|... ..+.|.|..+|.+... + ......+|+.++|.|.+.|+ |+ +
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~---~~~~l~v~~~P~v~~~--~------~~~~~~~~~~~~L~C~a~g~~P~~~ 70 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQ---QIIQLSVSEPPRVRLS--L------EKLVSMIEEPQTLICHIAGYYPLDV 70 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCccee---eEEEEEEecCCceEEe--C------CCceeecCCcEEEEEEECCCCCCCe
Confidence 689999999999999999998766543 3478888888765332 1 11223478999999999996 54 4
Q ss_pred eEEEEeCCcccCC------Cce----e------eecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896 703 SYNWTRRGSPLPR------NAY----F------ENFNRILTIPNVKVEDQGEYICRASNDR 747 (813)
Q Consensus 703 ~i~W~k~g~~l~~------~~~----~------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 747 (813)
.|+|+|+|..... +.. . ..-.+.|.|..-..++.+.|+|++.+..
T Consensus 71 ~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 71 QVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred EEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 8999999865221 111 0 1113468887666667789999998753
No 185
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.30 E-value=6.7e-12 Score=97.58 Aligned_cols=70 Identities=30% Similarity=0.565 Sum_probs=53.8
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEe
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 291 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~ 291 (813)
++|.|.+.|.|.|.+.|+|++..+.. ........+++|.|.+. +.+|+|.|+|.|.|..|.. +..+.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~---------~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 69 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPA---------DRTKFENFNKTLKIDNV-SEEDDGEYRCTASNSLGSA-RHTISVT 69 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCC---------CceeEecCCCEEEECCC-CHHHCEEEEEEEEeCCceE-EEEEEEE
Confidence 57999999999999999999975421 11122223567888875 8999999999999999987 6666666
Q ss_pred e
Q psy14896 292 F 292 (813)
Q Consensus 292 v 292 (813)
|
T Consensus 70 V 70 (71)
T cd05731 70 V 70 (71)
T ss_pred E
Confidence 5
No 186
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.30 E-value=3.9e-12 Score=99.36 Aligned_cols=68 Identities=28% Similarity=0.518 Sum_probs=55.9
Q ss_pred cCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
..+.+|++++|.|.+.|.|.+ .+.|+|||..|.. ..+.|+|.++ .+|+|.|+|+|.|. ..+..++|+|
T Consensus 10 ~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~~--~~S~~v~l~V 78 (78)
T cd05752 10 TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQGS--SLSDPVHLEV 78 (78)
T ss_pred eEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCCC--cCCCCEEEeC
Confidence 567899999999999998864 7999999998732 2568999999 99999999999985 4455555544
No 187
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.29 E-value=1.1e-11 Score=96.86 Aligned_cols=77 Identities=19% Similarity=0.402 Sum_probs=59.6
Q ss_pred CceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (813)
Q Consensus 190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (813)
|+++..|....+.+| ++++|+|.+.+.|.+ .+.|||||..+. ..+++|.|.+. .+|
T Consensus 1 ~vv~~~P~~~~v~~G-----~~V~L~C~~~~~p~~~~~~W~kng~~l~----------------~~~~~l~i~~~--~~d 57 (78)
T cd05752 1 AVVSLDPPWTTIFQG-----EKVTLTCNGFNSPEQNSTQWYHNGKLLE----------------TTTNSYRIRAA--NND 57 (78)
T ss_pred CeEEeCCCCeEeeCC-----CCEEEEEeCCCCCCCccEEEEECCEEee----------------ccCCeEEEeec--ccC
Confidence 466777888888777 779999999998864 799999997541 12456777774 899
Q ss_pred CeeEEEEeecCceeeEeeeeEEee
Q psy14896 269 RGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
+|.|+|+|.|. ..|..++|+|
T Consensus 58 sG~Y~C~a~~~---~~S~~v~l~V 78 (78)
T cd05752 58 SGEYRCQTQGS---SLSDPVHLEV 78 (78)
T ss_pred CEEeEEECCCC---cCCCCEEEeC
Confidence 99999999985 3366777764
No 188
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.29 E-value=1.8e-11 Score=99.95 Aligned_cols=81 Identities=27% Similarity=0.464 Sum_probs=58.9
Q ss_pred CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeC---CeEEEcCCccccCCeeE
Q psy14896 196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG---GNLIINDPRQVEDRGSY 272 (813)
Q Consensus 196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~---~~l~i~~~~~~~d~G~Y 272 (813)
|..+.+.+| +++.|.|.+.|.|.|.+.|||+|..+... ......... .+|.|.+. +.+|+|.|
T Consensus 8 p~~v~v~eG-----~~v~L~C~v~g~P~p~i~W~k~~~~~~~~--------~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y 73 (92)
T cd05891 8 PDVVTIMEG-----KTLNLTCTVFGNPDPEVIWFKNDQDIELS--------EHYSVKLEQGKYASLTIKGV-TSEDSGKY 73 (92)
T ss_pred CCcEEEcCC-----CEEEEEEEEEEeCCCeEEEEECCEECCCC--------CCEEEEEcCCCEEEEEECCC-ChhhCEEE
Confidence 456677666 77999999999999999999999865321 111111222 26777775 89999999
Q ss_pred EEEeecCceeeEeeeeEEe
Q psy14896 273 HCKASNKFGSIISESVQLA 291 (813)
Q Consensus 273 ~C~a~n~~g~~~s~~~~l~ 291 (813)
+|.|.|..|.. +..+.|.
T Consensus 74 ~C~a~N~~G~~-~~~~~v~ 91 (92)
T cd05891 74 SINVKNKYGGE-TVDVTVS 91 (92)
T ss_pred EEEEEeCCCce-eeEEEEE
Confidence 99999999976 4444444
No 189
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.28 E-value=1.1e-11 Score=97.79 Aligned_cols=66 Identities=27% Similarity=0.502 Sum_probs=51.7
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe--e--CCeEEEcCCccccCCeeEEEEeecCceeeE
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL--S--GGNLIINDPRQVEDRGSYHCKASNKFGSII 284 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~ 284 (813)
|+++.|.|.+.|.|.|.|.|+|++..+. ...++.. . .++|.|.+. +.+|+|.|+|.|.|..|...
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~----------~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~ 69 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVP----------DSARVSITSEGGYGTLTIRDV-KESDQGAYTCEAINTRGMVF 69 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECC----------CCCCEEEEECCCEEEEEECCC-ChHHCEEEEEEEEecCCEEE
Confidence 5789999999999999999999987652 1223322 1 246777775 89999999999999999874
Q ss_pred e
Q psy14896 285 S 285 (813)
Q Consensus 285 s 285 (813)
+
T Consensus 70 ~ 70 (78)
T cd05743 70 G 70 (78)
T ss_pred e
Confidence 3
No 190
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.28 E-value=1.7e-11 Score=99.51 Aligned_cols=77 Identities=27% Similarity=0.569 Sum_probs=64.9
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceee-----ecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 756 (813)
..+..|+.++|.|.+.|.|.|.+.|+|++..+....... .....|.|.++..+|+|.|.|.|.|..|..+.++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 345689999999999999999999999998886543221 223579999999999999999999999999999888
Q ss_pred EE
Q psy14896 757 SI 758 (813)
Q Consensus 757 ~V 758 (813)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 75
No 191
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.28 E-value=1e-11 Score=101.29 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=64.2
Q ss_pred CCCceEEeCCCCCCCccEEEEccCCCCCc------ccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCce
Q psy14896 583 NWGKAMFCDPPTNYPGVNYYWARDYFPNF------VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 656 (813)
Q Consensus 583 g~~~~l~C~~~~~~p~~~v~W~k~~~~~~------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~ 656 (813)
|+.++|.|.+ .|.|.|.+.|+|++.... .....++.+..+++|+|.++..+|+|.|+|.|.|..|.... .
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~---~ 76 (90)
T cd05726 1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILT---K 76 (90)
T ss_pred CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEE---E
Confidence 5788999999 899999999999986532 12345777777889999999999999999999999987544 3
Q ss_pred eeEEEccCC
Q psy14896 657 FPLKVFPHS 665 (813)
Q Consensus 657 ~~l~v~~~p 665 (813)
+.|.|....
T Consensus 77 ~~l~V~~~~ 85 (90)
T cd05726 77 AYLEVTDVI 85 (90)
T ss_pred EEEEEeecc
Confidence 777777643
No 192
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.28 E-value=1.2e-11 Score=98.11 Aligned_cols=78 Identities=35% Similarity=0.509 Sum_probs=57.3
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE-eeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEE
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l 290 (813)
|+|.|.+.|.|.|.|.|+|++....... ........++. ..+++|.|.+. +.+|+|.|+|.|.|..|...+..+.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~--~~~~~~~~r~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQH--THTCCLAGRIQLLSNGSLLIKHV-LEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCcccccc--ccccccCCCEEEecCCeEEECcC-CcccCEEEEEEEEeCCCCCCceEEEE
Confidence 5799999999999999999864321100 00011233444 35788998885 89999999999999999987888877
Q ss_pred ee
Q psy14896 291 AF 292 (813)
Q Consensus 291 ~v 292 (813)
+|
T Consensus 78 ~~ 79 (79)
T cd05734 78 TV 79 (79)
T ss_pred eC
Confidence 64
No 193
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.28 E-value=1.4e-11 Score=98.63 Aligned_cols=75 Identities=24% Similarity=0.480 Sum_probs=66.3
Q ss_pred CCCceeecCCCeEEEecCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCe-eeEEEEeeecccc
Q psy14896 302 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG-NYSCNVQSKVSDT 377 (813)
Q Consensus 302 ~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~g~~ 377 (813)
..+..+.+|+++.|.|.++.|.|.|.|.|++++... +..+.|+.+..+|+|.|.+|+.+|+| .|.|.|.|.....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~-i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLH-ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcc-ccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 467788999999999998899999999999887654 45688999999999999999999999 8999999987544
No 194
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.27 E-value=1.2e-11 Score=100.65 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=54.5
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCc-----------cEEeeCCeEEEcCCccccCCeeEEEEee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK-----------RFTLSGGNLIINDPRQVEDRGSYHCKAS 277 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~-----------~~~~~~~~l~i~~~~~~~d~G~Y~C~a~ 277 (813)
|+.++|.|.+.|.|.|.|+|+|++..- . ..+.+.... .+....+.|.|.+. +.+|+|.|+|.|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~ 75 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVN-G---SKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNV-SFDDAGEYTCLAG 75 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccC-C---ceeCCCCCceEEEEEecCCcccccccceEEEecc-ccccCcEEEEEee
Confidence 577999999999999999999975210 0 001111111 11112346777775 8999999999999
Q ss_pred cCceeeEeeeeEEee
Q psy14896 278 NKFGSIISESVQLAF 292 (813)
Q Consensus 278 n~~g~~~s~~~~l~v 292 (813)
|..|.. +.++.|.|
T Consensus 76 N~~G~~-~~sa~L~V 89 (90)
T cd04974 76 NSIGPS-HHSAWLTV 89 (90)
T ss_pred cccCcc-cCCEEEEe
Confidence 999987 66788876
No 195
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.26 E-value=3.2e-11 Score=97.79 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=63.2
Q ss_pred CcCCCCCCeEEEEEEecCCCCC-eEEEEeCCcccCCC--ceee--------ecceEEEECCCCCCC-CEEEEEEEEcCCC
Q psy14896 681 PEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRN--AYFE--------NFNRILTIPNVKVED-QGEYICRASNDRS 748 (813)
Q Consensus 681 ~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~g~~l~~~--~~~~--------~~~~~L~i~~v~~~d-~G~Y~C~a~N~~G 748 (813)
.+.+.+|++++|.|.+.+.|+| .|.|.+++..|..+ .++. ...+.|+|.++..+| .|.|.|.|.|.+|
T Consensus 10 s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G 89 (98)
T cd05898 10 VQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG 89 (98)
T ss_pred eEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence 4678899999999999999987 68999998887554 2331 235689999998877 7999999999999
Q ss_pred ceEEEEEE
Q psy14896 749 ALESSVTI 756 (813)
Q Consensus 749 ~~~~~~~l 756 (813)
++...+.|
T Consensus 90 ~d~~~i~L 97 (98)
T cd05898 90 SGTAIIQL 97 (98)
T ss_pred cceEEEEe
Confidence 99998887
No 196
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.26 E-value=2.1e-11 Score=96.42 Aligned_cols=65 Identities=23% Similarity=0.376 Sum_probs=56.0
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC-ceeeecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYICRASNDR 747 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 747 (813)
..+..|+++.|.|.+.+ |.|.|+|+|||.+|..+ .++...+..|.|.+++.+|+|.|+|.|.+..
T Consensus 6 ~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 6 RTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 56789999999999865 77899999999999766 4555556789999999999999999999863
No 197
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.26 E-value=2.6e-11 Score=97.11 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=55.6
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCC-CccEE-eeCCeEEEcCCccccCCeeEEEEeecCceeeEee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS-DKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~ 286 (813)
|++++|.|.+.|.|.|.|.|||++..-.. ..+.+.. ..++. ...++|.|.+. +.+|+|.|+|.|.|..|.. +.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~---~~~~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~-~~ 75 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKEN---LIMRPNHVRGNVVVTNIGQLVIYNA-QPQDAGLYTCTARNSGGLL-RA 75 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcc---eeecCCcccCCEEEccccEEEEccC-CcccCEEEEEEEecCCceE-EE
Confidence 57899999999999999999998531100 0111111 11222 23567888885 8999999999999999986 56
Q ss_pred eeEEee
Q psy14896 287 SVQLAF 292 (813)
Q Consensus 287 ~~~l~v 292 (813)
.+.|.|
T Consensus 76 ~~~l~v 81 (81)
T cd05765 76 NFPLSV 81 (81)
T ss_pred EEEEeC
Confidence 666654
No 198
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.26 E-value=3.7e-11 Score=98.04 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=58.5
Q ss_pred eCCCceeecCCCccccccEEEEeeeccCCCCeEEEee-cccccccccccccccCCCccEEeeC----CeEEEcCCccccC
Q psy14896 194 KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK-EDYVQDRLVANLIDPLSDKRFTLSG----GNLIINDPRQVED 268 (813)
Q Consensus 194 ~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~~d 268 (813)
..|.+..+..| +++.|.|.+.|.| +.+.|++ ++..+. ..+......+ ++|.|.+. +.+|
T Consensus 5 v~p~~~~v~~G-----~~~~l~C~~~G~p-~~i~W~~~~~~~~~---------~~~~~~~~~~~~~~~~L~I~~v-~~~D 68 (92)
T cd04977 5 IVPSQGEISVG-----ESKFFLCQVIGEP-KDISWFSPNGEKLV---------TQQQISVVQNDDVRSTLTIYNA-NIED 68 (92)
T ss_pred EecCcEEECCC-----CeEEEEEEeEeeC-CeEEEECCCCCEec---------cCCCEEEEeCCCCEEEEEEecC-Cccc
Confidence 44666777777 7799999999987 4999998 554431 1122222222 36888875 8999
Q ss_pred CeeEEEEeecCceeeEeeeeEEee
Q psy14896 269 RGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 269 ~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
+|.|+|.|.|..|...+.++.|.|
T Consensus 69 ~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 69 AGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred CEEEEEEEEcCCCCcceeEEEEEC
Confidence 999999999998765466666653
No 199
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.25 E-value=2.1e-11 Score=98.11 Aligned_cols=75 Identities=24% Similarity=0.467 Sum_probs=55.2
Q ss_pred ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896 208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 287 (813)
Q Consensus 208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~ 287 (813)
.|+++.|.|.+.|.|.|.+.|+|+|..+... ..........+|.|.+. +.+|+|.|+|.|.|..|.. +..
T Consensus 8 ~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~--------~~~~~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G~~-~~~ 77 (82)
T cd05856 8 VGSSVRLKCVASGNPRPDITWLKDNKPLTPT--------EIGESRKKKWTLSLKNL-KPEDSGKYTCHVSNRAGEI-NAT 77 (82)
T ss_pred CCCeEEEEEEeeEeCCCcEEEEECCcCCcCC--------ccceecCceEEEEEccC-ChhhCEEEEEEEEcCCccE-EEE
Confidence 3578999999999999999999999865311 11111112356777775 8999999999999999976 555
Q ss_pred eEEee
Q psy14896 288 VQLAF 292 (813)
Q Consensus 288 ~~l~v 292 (813)
+.|.|
T Consensus 78 ~~v~v 82 (82)
T cd05856 78 YKVDV 82 (82)
T ss_pred EEEeC
Confidence 65543
No 200
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.24 E-value=3.3e-11 Score=98.15 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=63.9
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC----ceeeecceEEEECCCCCCCCEEEEEEEEcCC-CceEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN----AYFENFNRILTIPNVKVEDQGEYICRASNDR-SALESSVTI 756 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-G~~~~~~~l 756 (813)
..+.+|+++.|.|.+.+ |.+.+.|+|++..+... .++......|.|.+++.+|+|.|.|.|.|.. +....++.|
T Consensus 6 ~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l 84 (89)
T cd04979 6 VTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSL 84 (89)
T ss_pred EEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEE
Confidence 45788999999999987 88899999999887654 2444445679999999999999999999764 557778888
Q ss_pred EEEc
Q psy14896 757 SIQA 760 (813)
Q Consensus 757 ~V~~ 760 (813)
.|.+
T Consensus 85 ~V~~ 88 (89)
T cd04979 85 NVLE 88 (89)
T ss_pred EEec
Confidence 8853
No 201
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.23 E-value=2.6e-11 Score=98.87 Aligned_cols=82 Identities=20% Similarity=0.271 Sum_probs=54.0
Q ss_pred cccEEEEeeeccCCCCeEEEeecc----cccccccccccccCCCccEEee---CCeEEEcCCccccCCeeEEEEeecCce
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKED----YVQDRLVANLIDPLSDKRFTLS---GGNLIINDPRQVEDRGSYHCKASNKFG 281 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g----~~l~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~d~G~Y~C~a~n~~g 281 (813)
|++++|.|.+.|.|.|.|+|+|++ ..+...............+... .++|.|.+. +.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNV-TFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccC-CHHHCEEEEEEEEeCCC
Confidence 578999999999999999999953 3221000000000000000011 146888875 89999999999999999
Q ss_pred eeEeeeeEEee
Q psy14896 282 SIISESVQLAF 292 (813)
Q Consensus 282 ~~~s~~~~l~v 292 (813)
.. +.++.|.|
T Consensus 80 ~~-~~~a~L~V 89 (90)
T cd05858 80 IS-HHSAWLTV 89 (90)
T ss_pred cc-cceEEEEE
Confidence 87 66777776
No 202
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.22 E-value=8.6e-11 Score=97.56 Aligned_cols=86 Identities=24% Similarity=0.380 Sum_probs=61.2
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeC--------CeEE
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSG--------GNLI 259 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--------~~l~ 259 (813)
||.|. .+....+.+| +++.|.|.+.|.|.| .|.|++++..+.. ..+.++.+.. ++|.
T Consensus 2 pp~i~-~~~~~~~~~G-----~~v~L~C~~~g~P~P~~v~W~~~~~~i~~--------~~~~r~~i~~~~~~~~~~s~L~ 67 (98)
T cd05758 2 PPIIT-SEATQYAILG-----DKGRVECFIFSTPPPDRIVWTWKENELES--------GSSGRYTVETDPSPGGVLSTLT 67 (98)
T ss_pred CCeEc-CCCcEEEeCC-----CcEEEEEEEcccCCCCEeEEEECCEEccC--------CCCCCEEEEEecCCCceEEEEE
Confidence 46664 3556666666 779999999999999 6999999976632 2223444321 2678
Q ss_pred EcCCccc-cCCeeEEEEeecCceeeEeeeeEE
Q psy14896 260 INDPRQV-EDRGSYHCKASNKFGSIISESVQL 290 (813)
Q Consensus 260 i~~~~~~-~d~G~Y~C~a~n~~g~~~s~~~~l 290 (813)
|.+. +. +|.|.|+|.|.|..|.+ ...+.|
T Consensus 68 I~~v-~~~d~~G~Y~C~A~N~~G~~-~~~~~L 97 (98)
T cd05758 68 ISNT-QESDFQTSYNCTAWNSFGSG-TAIISL 97 (98)
T ss_pred ECCc-cccccceeEEEEEEcCCCcc-cEEEEe
Confidence 8775 66 55999999999999986 444444
No 203
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.21 E-value=5.5e-11 Score=96.80 Aligned_cols=77 Identities=23% Similarity=0.426 Sum_probs=58.6
Q ss_pred CcCCCCCCeEEEEEEecCCCCCeEEEEeCCcccC--------CCceee-----ecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--------RNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDR 747 (813)
Q Consensus 681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~--------~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 747 (813)
+..+.+|+++.|.|.+.|.|.|.|.|+|++..+. .+.++. ....+|.|.+++.+|+|.|+|.|.. .
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-~ 84 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT-M 84 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-e
Confidence 3678899999999999999999999999876431 122222 1246899999999999999999987 3
Q ss_pred CceEEEEEEEE
Q psy14896 748 SALESSVTISI 758 (813)
Q Consensus 748 G~~~~~~~l~V 758 (813)
-..++.++|+|
T Consensus 85 ~~~~~~~~~~v 95 (95)
T cd05882 85 PVRTAKATVTV 95 (95)
T ss_pred ccccEEEEEEC
Confidence 34555555554
No 204
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.21 E-value=5.8e-11 Score=105.96 Aligned_cols=77 Identities=26% Similarity=0.451 Sum_probs=68.3
Q ss_pred EEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCceeecCCCeEEEEEEEccc-CC-ceEEEEECCEe
Q psy14896 725 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV-PD-VTYSWFRNGEL 801 (813)
Q Consensus 725 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-~~v~W~k~g~~ 801 (813)
+|+|.+++.+|+|.|.|.+.|..|..+..+.|.|..+|.+...+.......|..++|.|.+.|. |+ +.|+|+|+|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 6999999999999999999999999999999999999998776666555588999999999996 54 58999999865
No 205
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.21 E-value=6.8e-11 Score=96.81 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=59.1
Q ss_pred CcCCCCCCeEEEEEEecCCCCCeEEEEeCC--------cccCCCceee-----ecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRG--------SPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDR 747 (813)
Q Consensus 681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g--------~~l~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 747 (813)
+..+.+|++++|.|.+.+.|.|.|.|++.+ .....+.++. ....+|+|.+++.+|+|.|+|.+.+.
T Consensus 6 ~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~- 84 (95)
T cd07701 6 NVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM- 84 (95)
T ss_pred eEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee-
Confidence 467899999999999999999999998632 2222223332 23468999999999999999999985
Q ss_pred CceEEEEEEEE
Q psy14896 748 SALESSVTISI 758 (813)
Q Consensus 748 G~~~~~~~l~V 758 (813)
...+..+.|+|
T Consensus 85 ~~~~~~~~l~v 95 (95)
T cd07701 85 PVKTSKAYLTV 95 (95)
T ss_pred cCccEEEEEEC
Confidence 44477777765
No 206
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.19 E-value=5.5e-11 Score=95.15 Aligned_cols=74 Identities=23% Similarity=0.475 Sum_probs=64.3
Q ss_pred CCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCe-eEEEEEEeeecC
Q psy14896 575 RAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG-NYSCNVQSKVSD 649 (813)
Q Consensus 575 ~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~a~n~~g~ 649 (813)
..+..+.+|+++.|.|..+.|.|.|.|.|++++... +..+.|+.+..+|+|.|.++..+|+| .|.|.|.|.+..
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~-i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLH-ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcc-ccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 356678899999999997799999999999887643 45678999999999999999999999 899999998743
No 207
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.17 E-value=9.9e-11 Score=92.63 Aligned_cols=70 Identities=23% Similarity=0.409 Sum_probs=56.9
Q ss_pred CCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEE
Q psy14896 195 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 274 (813)
Q Consensus 195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C 274 (813)
+|.+..+..| +++.|.|.+.+ |.|+|.|+|||.+|. ....++.+.++.|+|.+. +.+|+|.|+|
T Consensus 2 ~P~~~~v~~G-----~~v~L~C~~~~-~~~~i~W~~ng~~i~---------~~~~r~~~~~~~L~I~nv-~~~DsG~Y~C 65 (87)
T cd05873 2 DPRQRTFKLG-----NNAELKCSPKS-NLARVVWKFDGKVLT---------PESAKYLLYRDGLLIFNA-SEADAGRYQC 65 (87)
T ss_pred CcceEEEECC-----CCEEEEEECCC-CCCeEEEEECCEECC---------CCCceEEEECCcEEEeCC-CHHHCEEEEE
Confidence 4677788777 66999999876 788999999998763 122467778889999985 8999999999
Q ss_pred EeecCc
Q psy14896 275 KASNKF 280 (813)
Q Consensus 275 ~a~n~~ 280 (813)
.|.+..
T Consensus 66 ~a~e~~ 71 (87)
T cd05873 66 LSVEKS 71 (87)
T ss_pred EEEecc
Confidence 999763
No 208
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.17 E-value=7e-11 Score=92.98 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=57.8
Q ss_pred ceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCc-cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEc
Q psy14896 586 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG-ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 662 (813)
Q Consensus 586 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~ 662 (813)
+.|.|.+ .|.|.|.+.|+|++..+......++....++ +|.|.++..+|.|.|+|.|.|..|.+.. .+.|.|.
T Consensus 1 ~~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~---~~~l~V~ 74 (76)
T cd05736 1 ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDED---ISSLFVE 74 (76)
T ss_pred CEeEeEe-eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcce---EEEEEEE
Confidence 4689999 7999999999999987544434455555555 4999999999999999999999987644 3666664
No 209
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.15 E-value=8.7e-11 Score=93.45 Aligned_cols=73 Identities=23% Similarity=0.427 Sum_probs=58.5
Q ss_pred cCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISI 758 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V 758 (813)
..+.+|++++|.|.+. +.|.+.+.|+|+|..+... .....|.|.+++.+|+|.|+|.|.|..|.. +..+.|+|
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 3578999999999986 4667789999999877532 235689999999999999999999998853 44555554
No 210
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.15 E-value=1.7e-10 Score=87.32 Aligned_cols=63 Identities=41% Similarity=0.758 Sum_probs=54.4
Q ss_pred CCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 748 (813)
Q Consensus 686 ~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 748 (813)
+|++++|.|.+.+.|.+.+.|++++..+............|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 489999999999999999999999988874334445567899999999999999999999876
No 211
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.14 E-value=2.6e-10 Score=92.81 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=62.4
Q ss_pred CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEE
Q psy14896 196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCK 275 (813)
Q Consensus 196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~ 275 (813)
|..+.+.+| +++.|.|.+.+ |.+.+.|||++..+... .....++....+.|.|.+. +.+|+|.|+|.
T Consensus 3 ~~~~~v~~g-----~~v~L~C~~~~-p~~~i~W~k~~~~~~~~------~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~ 69 (89)
T cd04979 3 EKVVTVVEG-----NSVFLECSPKS-NLASVVWLFQGGPLQRK------EEPEERLLVTEDGLLIRSV-SPADAGVYTCQ 69 (89)
T ss_pred ceEEEEECC-----CcEEEEEeCCC-CCceEEEEECCcccccc------cCcCceEEEcCCCEEEccC-CHHHCEEEEEE
Confidence 445566566 77999999988 88999999999765221 0112345555667888775 89999999999
Q ss_pred eecCceeeEeeeeEEeee
Q psy14896 276 ASNKFGSIISESVQLAFG 293 (813)
Q Consensus 276 a~n~~g~~~s~~~~l~v~ 293 (813)
|.|..+...+.++.|.|.
T Consensus 70 a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 70 SVEHGFKQTLATYSLNVL 87 (89)
T ss_pred EecCccceeEeEEEEEEe
Confidence 998777666667777763
No 212
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.14 E-value=9.8e-11 Score=92.11 Aligned_cols=64 Identities=28% Similarity=0.626 Sum_probs=48.3
Q ss_pred EEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEEe----eCCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896 212 ITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL----SGGNLIINDPRQVEDRGSYHCKASNKFGSI 283 (813)
Q Consensus 212 v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~ 283 (813)
++|.|.+.| .|.|.+.|||+|+++.... ....+.+ ..++|.|.+. +.+|+|.|+|.|.|..|.+
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~-------~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKN-------KPRNIKIRNKKKNSELQINKA-KLADSGEYTCVVENILGND 69 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccC-------CcceEEEEecCceEEEEEccC-CcccCeEEEEEEEEcCCce
Confidence 479999999 9999999999998764211 0011111 2356788775 8999999999999999976
No 213
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.14 E-value=2.3e-10 Score=92.59 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=61.5
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCC--cc----cCCCceeeecceEEEECCCCCCCCEEEEEEEE-cCCCceEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRG--SP----LPRNAYFENFNRILTIPNVKVEDQGEYICRAS-NDRSALESSV 754 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g--~~----l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~-N~~G~~~~~~ 754 (813)
+.+.+|+++.|.|.. +.|.|.++|||.+ .. +..+.++....+.|.|.+++.+|+|.|+|.|. |..|.....+
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~ 84 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY 84 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence 446789999999997 5899999999843 22 12233444456779999999999999999998 5778788899
Q ss_pred EEEEEc
Q psy14896 755 TISIQA 760 (813)
Q Consensus 755 ~l~V~~ 760 (813)
+|.|..
T Consensus 85 ~l~v~~ 90 (91)
T cd05871 85 TLHVIE 90 (91)
T ss_pred EEEEec
Confidence 998864
No 214
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.12 E-value=3e-10 Score=91.08 Aligned_cols=74 Identities=27% Similarity=0.455 Sum_probs=58.7
Q ss_pred CCeEEEEEEecCCCC--CeEEEEeCCcccCCCc-----ee-----eecceEEEECCCCCCCCEEEEEEEEcCCCceEEEE
Q psy14896 687 GDKVRLECVAFGYPV--PSYNWTRRGSPLPRNA-----YF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSV 754 (813)
Q Consensus 687 G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~~-----~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 754 (813)
|+++.|.|.+.+.|. ..+.|.++++.+.... +. ....++|.|.+++.+|+|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 789999999987664 4789999886442111 00 12356899999999999999999999999999999
Q ss_pred EEEEEc
Q psy14896 755 TISIQA 760 (813)
Q Consensus 755 ~l~V~~ 760 (813)
.|.|++
T Consensus 81 ~~~V~~ 86 (86)
T cd05862 81 IVIVHE 86 (86)
T ss_pred EEEEeC
Confidence 998863
No 215
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.11 E-value=2.2e-10 Score=91.17 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=57.4
Q ss_pred eeecCCCccccccEEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEee
Q psy14896 199 VVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS 277 (813)
Q Consensus 199 ~~v~~g~~~~g~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~ 277 (813)
..+.+| ++++|+|.+. +.|.+.+.|||+|..+. +...+.+|.|.+. +.+|+|.|+|.|.
T Consensus 9 ~~V~~G-----~~vtL~C~~~~~~~~~~~~w~k~g~~~~--------------~~~~~~~l~I~~~-~~~dsG~Y~C~~~ 68 (83)
T cd05753 9 RVVFEG-----EPLVLRCHGWKNKPVYKVTYYRDGKAKK--------------YSHSNSNLSIPQA-TLSDSGSYHCSGI 68 (83)
T ss_pred ceecCC-----CCEEEEeeCCCCCcceEEEEEECCeEcc--------------ccCCCceEEECcc-CHHHCEEEEEEEE
Confidence 345555 7799999995 45677899999997541 1112457888875 8999999999999
Q ss_pred cCceeeEeeeeEEee
Q psy14896 278 NKFGSIISESVQLAF 292 (813)
Q Consensus 278 n~~g~~~s~~~~l~v 292 (813)
|..|...|..+.|+|
T Consensus 69 ~~~~~~~s~~~~i~~ 83 (83)
T cd05753 69 IGSYDYSSEPVSITV 83 (83)
T ss_pred eCCceecCCCEEEEC
Confidence 999988888888765
No 216
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.10 E-value=3.2e-10 Score=89.18 Aligned_cols=65 Identities=26% Similarity=0.575 Sum_probs=47.6
Q ss_pred EEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEee----CCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896 212 ITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSI 283 (813)
Q Consensus 212 v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~ 283 (813)
+.|+|.+. +.|.+.++|||+|+++... .....++... .++|.|.+. +.+|+|.|+|.|+|..|..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~------~~~~~~~~~~~~~~~~~L~I~~~-~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAK------NKPDNKIKIRKKKKSSELQISKA-SLADNGEYKCMVSSKLGND 70 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccC------CCCCceEEEEeCCcEEEEEECcC-CcccCEEEEEEEEeCCCce
Confidence 47999986 4788999999999876321 1112223322 356888775 8999999999999999976
No 217
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.09 E-value=3.6e-10 Score=90.83 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=55.4
Q ss_pred cccEEEEeeeccC--CCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEee
Q psy14896 209 LNDITLSCYAGGY--PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286 (813)
Q Consensus 209 g~~v~l~C~~~g~--P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~ 286 (813)
|++++|.|.+.|. |.|.|+|++++..+......... ..........++|.|.+. +.+|+|.|+|.|+|..|.. +.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~s~L~I~~v-~~~DsG~Y~C~a~n~~~~~-~~ 77 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTR-QSLSEATELSSTLTIPNA-TLKDSGTYTCAASSGTMDQ-KE 77 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecc-cccccceEEEEEEEECCC-ChhhCEEEEEEEccCCCce-EE
Confidence 5889999999998 88999999998765322110000 000000112356888775 9999999999999999876 55
Q ss_pred eeEEee
Q psy14896 287 SVQLAF 292 (813)
Q Consensus 287 ~~~l~v 292 (813)
++.|.|
T Consensus 78 s~~v~v 83 (84)
T cd05742 78 STKVNI 83 (84)
T ss_pred EEEEEE
Confidence 666654
No 218
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.07 E-value=3.1e-10 Score=91.29 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=59.0
Q ss_pred cCCCCCCeEEEEEEe-cC----CCCCeEEEEeCCcccCCCc-eeee--cceEEEECCCCCCCCEEEEEEEEcCCCce---
Q psy14896 682 EAPKAGDKVRLECVA-FG----YPVPSYNWTRRGSPLPRNA-YFEN--FNRILTIPNVKVEDQGEYICRASNDRSAL--- 750 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~-~g----~P~p~i~W~k~g~~l~~~~-~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~--- 750 (813)
+.+..|.+..|.|.- .+ ++.|.|+||||+.+|.... ++.. ....|.|.++..+|+|.|+|+|.|.+|..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~ 84 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN 84 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence 456789999999972 33 4677999999999987543 2222 34679999999999999999999998754
Q ss_pred -EEEEEEEE
Q psy14896 751 -ESSVTISI 758 (813)
Q Consensus 751 -~~~~~l~V 758 (813)
++.+.|.|
T Consensus 85 vtr~~~l~v 93 (95)
T cd05897 85 ITRIIKLRI 93 (95)
T ss_pred EEEEEEEEE
Confidence 44555555
No 219
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.05 E-value=1.1e-09 Score=88.18 Aligned_cols=77 Identities=23% Similarity=0.356 Sum_probs=57.3
Q ss_pred CCCceeecCCCccccccEEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEE
Q psy14896 195 QPTDVVFDLSKRSILNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYH 273 (813)
Q Consensus 195 ~p~~~~v~~g~~~~g~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~ 273 (813)
.|....+.+| ++++|.|.+.+ .|.+.+.|+|++..+.. +....+++|.|.+. +.+|+|.|+
T Consensus 7 ~p~~~~v~~G-----~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------------~~~~~~~~L~I~~v-~~~DsG~Y~ 68 (85)
T cd05754 7 EPRSQEVRPG-----ADVSFICRAKSKSPAYTLVWTRVGGGLPS------------RAMDFNGILTIRNV-QLSDAGTYV 68 (85)
T ss_pred CCCceEEcCC-----CCEEEEEEcCCCCCCcEEEEEECCCcCCC------------cccccCCEEEECCC-CHHHCEEEE
Confidence 3556677666 67999999964 78899999999965311 11223677888875 899999999
Q ss_pred EEeecCceeeEeeeeEE
Q psy14896 274 CKASNKFGSIISESVQL 290 (813)
Q Consensus 274 C~a~n~~g~~~s~~~~l 290 (813)
|.|.|..|.. +..+.|
T Consensus 69 C~a~n~~g~~-~~~~~l 84 (85)
T cd05754 69 CTGSNMLDTD-EATATL 84 (85)
T ss_pred EEEeccCCeE-eEEEEE
Confidence 9999999977 444443
No 220
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.04 E-value=5.1e-10 Score=90.48 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=56.1
Q ss_pred CceeccCCCceEEeCCCCC----CCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCcc
Q psy14896 577 PEIGNQNWGKAMFCDPPTN----YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTG 651 (813)
Q Consensus 577 ~~~~~~g~~~~l~C~~~~~----~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 651 (813)
.+.+.+|++..|.|....+ +|.|.+.||||+.++. ...+.. ..+++|.|.++..+|+|.|+|.|.|..+...
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~--~~~~~~-~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLE--GDRKRF-VKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECC--CCccEE-ecCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 3567789999999987433 3678999999998743 333332 3677899999999999999999999887643
No 221
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.04 E-value=1e-09 Score=84.70 Aligned_cols=70 Identities=17% Similarity=0.334 Sum_probs=53.9
Q ss_pred eEEEEEEec-CCCCCeEEEEeCCcccCCCce------eeecceEEEECCCCCCCCEEEEEEEEcCCCc---eEEEEEEEE
Q psy14896 689 KVRLECVAF-GYPVPSYNWTRRGSPLPRNAY------FENFNRILTIPNVKVEDQGEYICRASNDRSA---LESSVTISI 758 (813)
Q Consensus 689 ~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~---~~~~~~l~V 758 (813)
.++|+|.+. |.|++.|+|||||++|..... .....++|.|.....+|++.|+|+|.|..+. .+.+..|.|
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~V 80 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLDV 80 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEeC
Confidence 378999987 889999999999999965321 1122457999999999999999999999765 345555543
No 222
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.03 E-value=1.2e-09 Score=88.84 Aligned_cols=85 Identities=20% Similarity=0.302 Sum_probs=56.8
Q ss_pred CceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEee-----CCeEEEcCCccccCCee
Q psy14896 197 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-----GGNLIINDPRQVEDRGS 271 (813)
Q Consensus 197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~G~ 271 (813)
++..+.+| +++.|+|.+.|.|.|.|.|+|+++.+...... ....+.++.+. +.+|.|.+. +.+|+|.
T Consensus 5 ~~~tv~~G-----~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~L~I~nV-~~~D~G~ 76 (95)
T cd05882 5 QDETVAVG-----GTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEK--RALRDNRIQLVKSTPTELIISISNV-QLSDEGE 76 (95)
T ss_pred ccEEEecC-----CcEEEEEEEeCCCCCeEEEeccCccEEEeCCe--EEEeCCeEEEEeCCCceEEEEECCC-CcccCEE
Confidence 45666666 77999999999999999999998754211100 01123344322 357888885 8999999
Q ss_pred EEEEeecCceeeEeeeeEEe
Q psy14896 272 YHCKASNKFGSIISESVQLA 291 (813)
Q Consensus 272 Y~C~a~n~~g~~~s~~~~l~ 291 (813)
|+|.|.... ..+..++|.
T Consensus 77 YtC~~~t~~--~~~~~~~~~ 94 (95)
T cd05882 77 YTCSIFTMP--VRTAKATVT 94 (95)
T ss_pred EEEEEEeec--cccEEEEEE
Confidence 999998722 224445544
No 223
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.03 E-value=4.6e-05 Score=94.01 Aligned_cols=533 Identities=12% Similarity=0.092 Sum_probs=274.4
Q ss_pred ceeeeeeeCCCCCCCCCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe
Q psy14896 174 YQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL 253 (813)
Q Consensus 174 ~~~~l~v~~p~~~~~~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~ 253 (813)
.+..+.|..|. .-|...+....+..+ .++.|+=.........+.|...+.... ...
T Consensus 1501 ~T~~VtV~~pV-----~~~tinas~~~vpl~-----~sV~Fta~~s~Gs~v~ysWdFGDg~ts--------~~~------ 1556 (2740)
T TIGR00864 1501 ATLNVAVKARV-----RGLTINASLTNVPLN-----GSVHFEAHLDAGDDVRFSWILCDHCTP--------IFG------ 1556 (2740)
T ss_pred EEEEEEEeccc-----cceEEcCCCcccccc-----ceEEEEEEccCCCceeEEEEeCCCCcc--------ccC------
Confidence 34445555442 124444444444444 458888544322345899988764210 000
Q ss_pred eCCeEEEcCCccccCCeeEEEEee--cCceeeEeeeeEEeeeeecc-cccCCC-------------CceeecCCCeEEEe
Q psy14896 254 SGGNLIINDPRQVEDRGSYHCKAS--NKFGSIISESVQLAFGFIGE-FNLKRA-------------PEIGNQNWGKAMFC 317 (813)
Q Consensus 254 ~~~~l~i~~~~~~~d~G~Y~C~a~--n~~g~~~s~~~~l~v~~~~~-~~~~~~-------------~~~~~~~~~~~l~C 317 (813)
+.+ ... +-...|.|+-..+ |..|.. .+++.+.|..+-. +.+... ......+..+.|.=
T Consensus 1557 -npt--~~y--TY~spGtYtVtLTvtN~~Gs~-~~T~~i~V~~~I~GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~ 1630 (2740)
T TIGR00864 1557 -GNT--IFY--TFRSVGTFNIIVTAENDVGAA-QASIFLFVLQEIEGLQILGETAEGGGGGVQELDGCYFETNHTVQFHA 1630 (2740)
T ss_pred -CCc--eEE--eecCCceEEEEEEEecCCCcc-ceeEEEEEeecccceEEEeecccccCCcccccccceeccCCEEEeee
Confidence 111 011 2455688877655 888875 4455555543211 111110 01112222233333
Q ss_pred cCCCCCCcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEE--EeeeccccCCCCCceeeEEccCCccc
Q psy14896 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCN--VQSKVSDTGRNGPFFPLKVFPHSNFQ 395 (813)
Q Consensus 318 ~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~--a~n~~g~~~~~s~~~~l~v~~~~~~~ 395 (813)
.+..| -...+.|...+.. ..+.... ...| ....++..+.|.|... |+|..|.... ...+.|..+-.-.
T Consensus 1631 ~~~~G-TnvsysW~~~~~n---~~dg~~~-~~tG--k~~~vt~~~pG~Y~VtL~aSN~vG~~t~---s~~i~v~epi~~L 1700 (2740)
T TIGR00864 1631 GFKDG-TNLSFSWNAILDN---EPDGPAF-AGSG--KGAKLNPLEAGPCDIFLQAANLLGQATA---DCTIDFLEPAGNL 1700 (2740)
T ss_pred ccCCC-CeeEEEEEEecCC---CCCCccc-cccC--ceeEEecCCCceEEEEEEEeecccceee---EEEEEEEEEcCce
Confidence 33333 4467788652110 0000000 1112 2333445777887765 6677665432 2455554432222
Q ss_pred ccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCCcCC--CCceeccccceEEEcccccccceEEeC-----
Q psy14896 396 QLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRILTIPNVKMRGPYFIKQ----- 468 (813)
Q Consensus 396 ~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~~l~--~~~~~~~~~~~l~i~~~~~~g~y~~~~----- 468 (813)
.+. ..+..+..|+++.|.-...+-....+.|...+..-. .... ..+.....|.|.+..
T Consensus 1701 ~L~-------aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~--------~tHtf~~~G~y~VtVta~N~ 1765 (2740)
T TIGR00864 1701 MLQ-------ASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPF--------MSHSFPSAGLHLVTMKAFNE 1765 (2740)
T ss_pred EEe-------ccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCc--------eEEEccCCceEEEEEEEEcc
Confidence 221 122356779999999877776777999987665311 1110 011122233333221
Q ss_pred ---------------CCceEeccc------ccccccCeEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEee
Q psy14896 469 ---------------PTDVVFDLS------KRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS 527 (813)
Q Consensus 469 ---------------~~~~~~~~~------~~~~g~~~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~ 527 (813)
...+.+... -...|..+.|.-.+.-.-+..+.|..++.. .. .
T Consensus 1766 vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~----------s~-------~ 1828 (2740)
T TIGR00864 1766 LGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGS----------SK-------M 1828 (2740)
T ss_pred ccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCC----------cc-------c
Confidence 011111000 112345566665543333347888776521 00 0
Q ss_pred CCeEEEeCCCCCCCCceEEE--EEEcCceeEEeecEEEEEeecc-cccccCCCceeccCCCceEEeCCCCCCCccEEEEc
Q psy14896 528 GGNLIINDPRQVEDRGSYHC--KASNKFGSIISESVQLAFGFIG-EFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWA 604 (813)
Q Consensus 528 ~~~l~i~~~~~~~d~G~Y~C--~a~n~~g~~~s~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~ 604 (813)
+.... ....+.|.|+. .|.|..+... .+..+.|+.+. .+.....+.....|+.++|++.+..| +...+.|.
T Consensus 1829 gk~v~----~Tf~~aG~ytV~L~AsN~vs~~~-~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~G-S~Vtf~w~ 1902 (2740)
T TIGR00864 1829 GKHAC----MTFPDAGTFAIRLNASNAVSGKS-ASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAG-SAVNFRLQ 1902 (2740)
T ss_pred cceeE----EecCCCeEEEEEEEEEcccCcce-eeeeEEEEEecceEEEecccccccCCCEEEEEEEecCC-CceEEEEE
Confidence 11111 15668899964 5778887653 44667776665 34555666677889999999988444 47889998
Q ss_pred cCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCC
Q psy14896 605 RDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684 (813)
Q Consensus 605 k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~ 684 (813)
.++....+. ..+....+.-.+-.....+..|.|..+.... .+.+.|..+- ..+.++... ...+
T Consensus 1903 fGdgs~~~~--------t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a---~~~V~Vle~V--~gL~I~~~c----~~~~ 1965 (2740)
T TIGR00864 1903 IGGAAPEVL--------QPGPRFSHSFPRVDDHMVNLRAKNEVSCAQA---NLHIEVLEAV--RGLQIPDCC----AAGI 1965 (2740)
T ss_pred eCCCCceee--------cCCCeEEeecCCCCcEEEEEEEEeccceeee---eEEEEEEEec--cceEecCCc----ccce
Confidence 764321111 1111111222222333445567888876433 2455555442 223222211 1125
Q ss_pred CCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEE--EEEcCCCceEEEEEEEEEcCC
Q psy14896 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC--RASNDRSALESSVTISIQAEP 762 (813)
Q Consensus 685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~~~~~~l~V~~~P 762 (813)
..|+..+|...+...-+..+.|+.+-..+..+..+...+...+.. ....|.|+. +|.|.+|+...+..|.|+.+.
T Consensus 1966 ~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~---~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i 2042 (2740)
T TIGR00864 1966 ATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYT---AEAAGLLEIQLGAFNALGAENITLQLEAQDAL 2042 (2740)
T ss_pred ecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEc---cCCCcEEEEEEEEEcccCcccccEEEEEEehe
Confidence 789999999999743345899997644443333221111122221 246888865 567999999888899999876
Q ss_pred ccc-ccCCceeecCCCeEEEEEEEcccC-CceEEEEE-CCEeccc
Q psy14896 763 NFT-IPLTDKHMDNQADLTWTCEAFGVP-DVTYSWFR-NGELGHQ 804 (813)
Q Consensus 763 ~~~-~~~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~k-~g~~l~~ 804 (813)
... ..........+..++|+|.+...+ ...+.|=+ ||.....
T Consensus 2043 ~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~ 2087 (2740)
T TIGR00864 2043 MDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQD 2087 (2740)
T ss_pred eeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCccc
Confidence 532 111223345578899999987645 47899955 5776544
No 224
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.03 E-value=1e-09 Score=87.75 Aligned_cols=78 Identities=18% Similarity=0.289 Sum_probs=54.0
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEE----eeCCeEEEcCCccccCCeeEEEEeecCce-ee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT----LSGGNLIINDPRQVEDRGSYHCKASNKFG-SI 283 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g-~~ 283 (813)
|++++|+|.+.|.|.+.+.|+++++....... ...+.. ....+|.|.+. +.+|+|.|+|.|+|..+ ..
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~------~~~~~~~~~~~~~s~L~I~~~-~~~DsG~Y~C~a~n~~~~~~ 73 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIP------EVEEVKVPATTLRSTLTFPHA-TVEDSGTYECAAHESTQDQK 73 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCce------EEEEEecCCcEEEEEEEECCC-CcCCCEEEEEEEEECccCcc
Confidence 68899999999999999999998864321110 000111 12346788775 99999999999998765 22
Q ss_pred EeeeeEEeee
Q psy14896 284 ISESVQLAFG 293 (813)
Q Consensus 284 ~s~~~~l~v~ 293 (813)
.+.++.|+|.
T Consensus 74 ~~~sv~i~V~ 83 (84)
T cd05861 74 AFKKVNITVH 83 (84)
T ss_pred eeEEEEEEEe
Confidence 3666777663
No 225
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.02 E-value=1.6e-09 Score=86.81 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=66.6
Q ss_pred cCCCCCCeEEEEEEecCCCCCe-EEEEeCCcccCCCce--ee-------ecceEEEECCCCCCCCEEEEEEEEcCCCceE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNAY--FE-------NFNRILTIPNVKVEDQGEYICRASNDRSALE 751 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~-i~W~k~g~~l~~~~~--~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 751 (813)
+.|.+|+++.|.|.+++.|+|. +.|.+++..+..... .. ...+.|.|..++.+|+|.|+|.|.|+.+..+
T Consensus 13 ~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s 92 (101)
T cd05860 13 IFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASAS 92 (101)
T ss_pred EEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEE
Confidence 6789999999999999999997 999999887643321 11 1346899999999999999999999999999
Q ss_pred EEEEEEEE
Q psy14896 752 SSVTISIQ 759 (813)
Q Consensus 752 ~~~~l~V~ 759 (813)
.++.|.|+
T Consensus 93 ~tF~l~v~ 100 (101)
T cd05860 93 VTFNVYVN 100 (101)
T ss_pred EEEEEEEe
Confidence 99999886
No 226
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.01 E-value=8.6e-10 Score=85.11 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=56.1
Q ss_pred ceEEeCCCCCCCccEEEEccCCCCCcccCC---CeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEE
Q psy14896 586 KAMFCDPPTNYPGVNYYWARDYFPNFVEED---KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLK 660 (813)
Q Consensus 586 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~ 660 (813)
+.|+|....+.|++.|+||||+.++..... ..-.....++|.|.....+|.+.|+|+|.|.++..+.......|.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~ 79 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLD 79 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEe
Confidence 689999999999999999999987532211 111122345699999999999999999999998766554444444
No 227
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.01 E-value=2.1e-09 Score=88.75 Aligned_cols=75 Identities=19% Similarity=0.345 Sum_probs=57.0
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcc---------cCCCceeee-----cceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSP---------LPRNAYFEN-----FNRILTIPNVKVEDQGEYICRASNDR 747 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~---------l~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~ 747 (813)
..+.+|++++|.|.+.+.|.+.+.|++.+.. +. +.++.. ....|+|.+++.+|+|.|+|.+.+..
T Consensus 7 ~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 7 VTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALR-DNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred EEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccc-cCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 5688999999999999999999999863321 22 123321 24579999999999999999999875
Q ss_pred CceEEEEEEEE
Q psy14896 748 SALESSVTISI 758 (813)
Q Consensus 748 G~~~~~~~l~V 758 (813)
. .++++.|+|
T Consensus 86 ~-~~~~~~~~v 95 (95)
T cd05717 86 V-QTAKATVTV 95 (95)
T ss_pred C-ceEEEEEEC
Confidence 3 466666665
No 228
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=98.98 E-value=1.1e-09 Score=101.42 Aligned_cols=102 Identities=28% Similarity=0.379 Sum_probs=74.4
Q ss_pred ccCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeE
Q psy14896 25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWV 104 (813)
Q Consensus 25 ~~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~ 104 (813)
....||.||..|+++||+|+....++|++|+..|++++++|+..++...+.++...+... ...+|+-.
T Consensus 81 ~~~~CP~~Wi~~~~~Cy~~~~~~~~t~~eA~~~C~~~~s~L~~~~~~~~L~~ll~~~~~~--~~~~~~~~---------- 148 (200)
T PF05473_consen 81 GCGPCPKGWIGYNNSCYRFSNSPKKTWEEARNICAAYNSTLANVNNAKSLLELLDVLNNW--SGEYWWNF---------- 148 (200)
T ss_pred cCCCCCccceeeCCEEEEEeCCCCcCHHHHHHHHHhcCCcCCCchhHHHHHHHHHHhccc--CcCCccee----------
Confidence 567899999999999999999863399999999999999999999988887777765221 12234322
Q ss_pred EcCCCCCCccccccCCCCCCcccCCeEEEEeeccccccceeeccCCCceeeeeeecc
Q psy14896 105 NEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASI 161 (813)
Q Consensus 105 W~dgs~~~~~~~~~~~~p~~~~~~~c~~~~~~~~~~~l~i~~~~~~d~~~y~C~~~~ 161 (813)
..+++...|..+.... ..+.+ |.....++|.+..
T Consensus 149 -----------------~~~d~~~~C~~~~~~~----~~~~d--C~~~~~~IC~~~r 182 (200)
T PF05473_consen 149 -----------------RNDDSIYNCIRPSDGV----SIIED--CSKTATVICYSPR 182 (200)
T ss_pred -----------------ECCCchhheeeeccCc----ccccc--cCCcceEEEcCCC
Confidence 0112246777765542 23334 9999999999964
No 229
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.97 E-value=1.5e-09 Score=87.65 Aligned_cols=69 Identities=26% Similarity=0.417 Sum_probs=53.0
Q ss_pred CCCCCCeEEEEEEecCCCCCeEEEEeCCcccC--------------CCcee-------eecceEEEECCCCCCCCEEEEE
Q psy14896 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--------------RNAYF-------ENFNRILTIPNVKVEDQGEYIC 741 (813)
Q Consensus 683 ~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~--------------~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C 741 (813)
.+.+|++|+|.|.+.+.|.+.|.|+++++... ...++ ......|+|.+++.+|+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 46789999999999999999999997763321 01111 1223569999999999999999
Q ss_pred EEEcCCCceE
Q psy14896 742 RASNDRSALE 751 (813)
Q Consensus 742 ~a~N~~G~~~ 751 (813)
.|.|..++.+
T Consensus 83 ~v~~~~~~~~ 92 (94)
T cd07690 83 EVEDKKEEVE 92 (94)
T ss_pred EECCccceEE
Confidence 9999877643
No 230
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.95 E-value=5.7e-09 Score=83.37 Aligned_cols=79 Identities=33% Similarity=0.606 Sum_probs=58.5
Q ss_pred CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCC
Q psy14896 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269 (813)
Q Consensus 190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 269 (813)
|.+...+ ..+.+| +++.|.|.+.++|.+.+.|++++..+.. ..+.+++.+ ++.+|+
T Consensus 2 P~l~~~~--~~v~~g-----~~~~l~C~~~~~p~~~~~w~~~~~~~~~----------------~~~~~~~~~-~~~~~~ 57 (80)
T PF13895_consen 2 PVLSSSP--QSVEEG-----DSVTLTCSVSGNPPPQVQWYKNGSPINS----------------SQNGLFIPN-VSPEDS 57 (80)
T ss_dssp -EEEEES--SEEETT-----SEEEEEEEEESSSSSEEEEEETTEEEEE----------------ESSEEEESS-EEGGGT
T ss_pred cEEEccc--eEEeCC-----CcEEEEEEEEcccceeeeeeeeeeeeee----------------eeeeeeeee-eccccC
Confidence 5666555 335555 7799999999999999999999876521 111256655 589999
Q ss_pred eeEEEEeecCceeeEeeeeEEee
Q psy14896 270 GSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 270 G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
|.|+|.|.+..+...+..+.|.|
T Consensus 58 g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 58 GNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCeEeeeEEeeC
Confidence 99999999977766677777765
No 231
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.95 E-value=1.4e-09 Score=86.90 Aligned_cols=71 Identities=39% Similarity=0.745 Sum_probs=58.9
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCC-ceEEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS-ALESSVTISI 758 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V 758 (813)
..+.+|++++|.|.+.+.|.+.+.|++++..+..+ ...|.|.+++.+|+|.|+|.|.|..| ..+.++.|+|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 45788999999999999999999999998777632 22288899999999999999999654 5667777776
No 232
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.95 E-value=2.9e-09 Score=86.38 Aligned_cols=86 Identities=26% Similarity=0.435 Sum_probs=59.2
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCC-eEEEeecccccccccccccccCCCccEEeeC--------CeEE
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSG--------GNLI 259 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p-~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--------~~l~ 259 (813)
||.| ...+...+.+| ++++|.|.+.+.|.| .|.|..++..|. .....+|.+.. .+|.
T Consensus 2 pP~i-~~~~s~~~~~G-----~~~~L~C~~~s~P~P~~i~W~w~~~~i~--------~~~~~r~~I~~~~~~~g~~S~L~ 67 (98)
T cd05898 2 PPII-SSEQVQYAVRG-----ERGKVKCFIGSTPPPDRIAWAWKENVLE--------SGTSERYTVERTSTGSGVLSTLT 67 (98)
T ss_pred CCEE-ecCceEEEeCC-----CcEEEEEEEccCCCCcEEEEEEcccccc--------CCCCCCEEEEEEccCCCcEEEEE
Confidence 4655 44455666566 779999999777887 689988887553 22334555431 2477
Q ss_pred EcCCccccC-CeeEEEEeecCceeeEeeeeEE
Q psy14896 260 INDPRQVED-RGSYHCKASNKFGSIISESVQL 290 (813)
Q Consensus 260 i~~~~~~~d-~G~Y~C~a~n~~g~~~s~~~~l 290 (813)
|.+. ..+| .|.|.|.|.|.+|.. +..++|
T Consensus 68 I~~~-~~~d~~g~Y~C~a~N~~G~d-~~~i~L 97 (98)
T cd05898 68 INNI-MEADFQTHYNCTAWNSFGSG-TAIIQL 97 (98)
T ss_pred ECCC-ccccCCcEEEEEEEeCCccc-eEEEEe
Confidence 7775 5555 899999999999987 444444
No 233
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.95 E-value=3.8e-09 Score=85.52 Aligned_cols=78 Identities=24% Similarity=0.433 Sum_probs=54.2
Q ss_pred ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeee
Q psy14896 208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 287 (813)
Q Consensus 208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~ 287 (813)
+|+.+.|.|.+.+.|.+.+.|+|++..+....... ..........|.|.+. +.+|+|.|.|.|.|..|.. +.+
T Consensus 8 ~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~-~~~d~g~Y~C~~~n~~g~~-~~~ 80 (85)
T cd05729 8 AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIG-----GYKVRKKKWTLILESV-VPSDSGKYTCIVENKYGSI-NHT 80 (85)
T ss_pred CCCcEEEEEEcCCCCCCeEEEEECCEECcccCcee-----EEEccCcEEEEEEeEC-CcccCEEEEEEEEECCceE-EEE
Confidence 34779999999999999999999997663211000 0000111235666664 8999999999999999986 556
Q ss_pred eEEee
Q psy14896 288 VQLAF 292 (813)
Q Consensus 288 ~~l~v 292 (813)
+.|+|
T Consensus 81 ~~l~v 85 (85)
T cd05729 81 YKVDV 85 (85)
T ss_pred EEEeC
Confidence 66653
No 234
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.92 E-value=5.2e-09 Score=84.05 Aligned_cols=77 Identities=18% Similarity=0.331 Sum_probs=60.2
Q ss_pred cCCCCCCeEEEEEEec-----------CCCCCeEEEEeCCcccCCC-------ceeeecceEEEECCCCCCCCEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAF-----------GYPVPSYNWTRRGSPLPRN-------AYFENFNRILTIPNVKVEDQGEYICRA 743 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~-----------g~P~p~i~W~k~g~~l~~~-------~~~~~~~~~L~i~~v~~~d~G~Y~C~a 743 (813)
..+.+|+.+.|.|..- ..+...++|||++..+... .++...+..|.|.++..+|+|.|+|++
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence 4568999999999861 1123489999998655442 256666789999999999999999999
Q ss_pred EcCCCceEEEEEEEE
Q psy14896 744 SNDRSALESSVTISI 758 (813)
Q Consensus 744 ~N~~G~~~~~~~l~V 758 (813)
.|.-.-...++.|+|
T Consensus 90 rN~t~C~~~~i~l~V 104 (104)
T cd05896 90 RNSTYCMKVSMSLTV 104 (104)
T ss_pred CCCCcceEEEEEEEC
Confidence 998777777777765
No 235
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.92 E-value=3.9e-09 Score=79.73 Aligned_cols=63 Identities=35% Similarity=0.626 Sum_probs=49.1
Q ss_pred ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896 208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281 (813)
Q Consensus 208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g 281 (813)
+|+++.|.|.+.+.|.+.+.|++++..+. ........+..|.|.+. +.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~----------~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP----------ESNRLSASGSTLTIKSV-SLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC----------CCCEEecCCcEEEEeeC-CcccCEEEEEEEecCCC
Confidence 46889999999888999999999997652 12222334567888775 89999999999998764
No 236
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.91 E-value=8.1e-09 Score=83.59 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=55.3
Q ss_pred ccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEee-cCceeeEee
Q psy14896 208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS-NKFGSIISE 286 (813)
Q Consensus 208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~-n~~g~~~s~ 286 (813)
+|+++.|.|.. +.|.|.+.|||++..... ......+.++...++.|.|.+. +.+|+|.|+|.|. |..+.. ..
T Consensus 10 eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~----~~~~~~~~r~~~~~~~L~I~~~-~~~DsG~Y~C~a~~~~~~~~-~~ 82 (91)
T cd05871 10 ENNSTFLECLP-KSPQASVKWLFQRGGDQR----KEEVKTEERLIHTERGLLLRSL-QRSDAGVYTCTAVEHSFSQT-LA 82 (91)
T ss_pred cCCcEEEEEEC-CCCCceEEEEEECCCCCc----cccccccccEEEecCeEEEeeC-ChhHCEEEEEEEEccCCeEE-EE
Confidence 45789999997 479999999995421110 0011234566677788998886 8999999999998 566655 34
Q ss_pred eeEEeee
Q psy14896 287 SVQLAFG 293 (813)
Q Consensus 287 ~~~l~v~ 293 (813)
.++|.|.
T Consensus 83 ~~~l~v~ 89 (91)
T cd05871 83 KYTLHVI 89 (91)
T ss_pred EEEEEEe
Confidence 6777663
No 237
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.91 E-value=3.2e-09 Score=80.37 Aligned_cols=57 Identities=35% Similarity=0.657 Sum_probs=46.4
Q ss_pred CCeEEEEEEe-cCCCCCeEEEEeCCcccCCCceeee--cc-e---EEEECCCCCCCCEEEEEEE
Q psy14896 687 GDKVRLECVA-FGYPVPSYNWTRRGSPLPRNAYFEN--FN-R---ILTIPNVKVEDQGEYICRA 743 (813)
Q Consensus 687 G~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~--~~-~---~L~i~~v~~~d~G~Y~C~a 743 (813)
|++++|.|.+ .+.|.+.+.|+|++..+........ .. . +|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 7778889999999988766543321 11 1 3999999999999999987
No 238
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.87 E-value=6.4e-09 Score=81.61 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=60.6
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCce--EEEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSAL--ESSVTISIQ 759 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~--~~~~~l~V~ 759 (813)
..+..|+++.|.|...+. .+.+.|+++|.+|..+.++.....-|.|..++.+|+|.|.|.|. +.|-. -..+.|.|.
T Consensus 6 ~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~l~v~ 83 (85)
T cd05872 6 RTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE-EEGFQQLVASYSLNVV 83 (85)
T ss_pred EEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe-cCCCeEEEEEEEEEEe
Confidence 567899999999999875 56999999999998776666556668899999999999999997 34544 445555543
No 239
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.87 E-value=1.1e-08 Score=83.67 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=57.3
Q ss_pred CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-----eCCeEEEcCCccccCCe
Q psy14896 196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-----SGGNLIINDPRQVEDRG 270 (813)
Q Consensus 196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G 270 (813)
++++.+.+| +++.|+|.+.+.|.+.|.||+.++.+.-..... ...+.|+.. .+.+|.|.+. +.+|+|
T Consensus 4 ~~~v~v~eG-----~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~--~~~~~r~~~~~~~~~~~sL~I~~v-~~~DsG 75 (95)
T cd07701 4 TQNVTVVEG-----GTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKK--ALRDNRIELVRASWHELSISISDV-SLSDEG 75 (95)
T ss_pred cceEEEecC-----CcEEEEEEEecCCceEEEEeCCCCeEEEEcCcc--cccCCCEEEEECCCCcEEEEECcC-CcccCE
Confidence 456777666 779999999999999999998654321100000 112344432 1346888885 899999
Q ss_pred eEEEEeecCceeeEeeeeEEee
Q psy14896 271 SYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 271 ~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
.|+|.+.+..+. +..+.|.|
T Consensus 76 ~Y~C~~~t~~~~--~~~~~l~v 95 (95)
T cd07701 76 QYTCSLFTMPVK--TSKAYLTV 95 (95)
T ss_pred EEEEEeEeecCc--cEEEEEEC
Confidence 999999975333 44555543
No 240
>smart00409 IG Immunoglobulin.
Probab=98.86 E-value=1.6e-08 Score=82.00 Aligned_cols=77 Identities=35% Similarity=0.632 Sum_probs=63.6
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeC-CcccCCCcee--eec--ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRR-GSPLPRNAYF--ENF--NRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~-g~~l~~~~~~--~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 756 (813)
..+..|+++.|.|.+.+.+.+.+.|+++ +..+....++ ... ...|.|.++..+|+|.|.|.+.|..|.....+.|
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 4567899999999999988889999998 8777533322 111 3689999999999999999999999988888888
Q ss_pred EE
Q psy14896 757 SI 758 (813)
Q Consensus 757 ~V 758 (813)
.|
T Consensus 84 ~V 85 (86)
T smart00409 84 TV 85 (86)
T ss_pred EE
Confidence 76
No 241
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.86 E-value=1.6e-08 Score=82.00 Aligned_cols=77 Identities=35% Similarity=0.632 Sum_probs=63.6
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeC-CcccCCCcee--eec--ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRR-GSPLPRNAYF--ENF--NRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~-g~~l~~~~~~--~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 756 (813)
..+..|+++.|.|.+.+.+.+.+.|+++ +..+....++ ... ...|.|.++..+|+|.|.|.+.|..|.....+.|
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 4567899999999999988889999998 8777533322 111 3689999999999999999999999988888888
Q ss_pred EE
Q psy14896 757 SI 758 (813)
Q Consensus 757 ~V 758 (813)
.|
T Consensus 84 ~V 85 (86)
T smart00410 84 TV 85 (86)
T ss_pred EE
Confidence 76
No 242
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.80 E-value=2.5e-08 Score=79.97 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=52.6
Q ss_pred cccEEEEeeeccCC--CCeEEEeeccccccccccccc-ccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEe
Q psy14896 209 LNDITLSCYAGGYP--NPSYEWFKEDYVQDRLVANLI-DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 285 (813)
Q Consensus 209 g~~v~l~C~~~g~P--~p~v~W~k~g~~l~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s 285 (813)
|+++.|.|.+.+.| ...+.|.++++.+........ ..... .......+|.|.+. +.+|+|.|+|.|+|..|.. .
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~-~~~~~~s~L~I~~~-~~~DsG~Y~C~a~n~~~~~-~ 77 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQ-EHTELSSTLTIENV-TLSDLGRYTCTASSGQMIA-K 77 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccccccc-ccceeeeEEEEecC-CcccCEEEEEEEeecceEe-c
Confidence 58899999998755 458899998865422110000 00000 00112456888885 8999999999999998876 5
Q ss_pred eeeEEee
Q psy14896 286 ESVQLAF 292 (813)
Q Consensus 286 ~~~~l~v 292 (813)
..+.|.|
T Consensus 78 ~~t~~~V 84 (86)
T cd05862 78 NSTIVIV 84 (86)
T ss_pred ccEEEEE
Confidence 5566665
No 243
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.79 E-value=1.2e-08 Score=82.23 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=53.2
Q ss_pred CceeccCCCceEEeCCCC----CCCccEEEEccCCCCCcccCCCeEEE-eeCccEEEEeecccCCeeEEEEEEeeecC
Q psy14896 577 PEIGNQNWGKAMFCDPPT----NYPGVNYYWARDYFPNFVEEDKRVFV-SYDGALYFSALEQIDAGNYSCNVQSKVSD 649 (813)
Q Consensus 577 ~~~~~~g~~~~l~C~~~~----~~p~~~v~W~k~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 649 (813)
++.+.++....|.|.-.. ..+.+.|+||||+.++.. ...++.. ..+..|.|.++..+|+|.|+|+|.|..|.
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~-~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK-DNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC-CCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 355677889999997322 346789999999986432 2233333 23456999999999999999999998764
No 244
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.79 E-value=2.3e-08 Score=79.87 Aligned_cols=70 Identities=29% Similarity=0.457 Sum_probs=52.0
Q ss_pred eEEEEEEecC-CCCCeEEEEeCCcccCCCcee----e-----ecceEEEECCCCCCCCEEEEEEEEcCCCc--eEEEEEE
Q psy14896 689 KVRLECVAFG-YPVPSYNWTRRGSPLPRNAYF----E-----NFNRILTIPNVKVEDQGEYICRASNDRSA--LESSVTI 756 (813)
Q Consensus 689 ~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~----~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~--~~~~~~l 756 (813)
.+.|.|.+.| .|.|.|+|+|+|++|...... . ...+.|.|.....+|.|.|+|+|.|..-. .+++++|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 3689999987 688999999999988644211 1 11246889888888999999999998643 4556655
Q ss_pred EE
Q psy14896 757 SI 758 (813)
Q Consensus 757 ~V 758 (813)
.|
T Consensus 81 ~v 82 (82)
T cd05759 81 DV 82 (82)
T ss_pred cC
Confidence 43
No 245
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.76 E-value=2.1e-08 Score=80.95 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=48.9
Q ss_pred ccccEEEEeeeccCCCCeEEEeeccccccccccccc----ccCCCccEEe-----eC--CeEEEcCCccccCCeeEEEEe
Q psy14896 208 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI----DPLSDKRFTL-----SG--GNLIINDPRQVEDRGSYHCKA 276 (813)
Q Consensus 208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~----~~~~~~~~~~-----~~--~~l~i~~~~~~~d~G~Y~C~a 276 (813)
+|++|+|.|.+++.|.+.|.||++++.........+ ......++.. .+ -+|.|.+. +.+|+|.|+|.|
T Consensus 6 ~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l-~~sDsgtY~C~v 84 (94)
T cd07690 6 KGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNL-KIEDSDTYICEV 84 (94)
T ss_pred CCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCC-CHHHCEEEEEEE
Confidence 468899999999989999999988743211000000 0011112111 12 24888886 899999999999
Q ss_pred ecCceee
Q psy14896 277 SNKFGSI 283 (813)
Q Consensus 277 ~n~~g~~ 283 (813)
.|..+++
T Consensus 85 ~~~~~~~ 91 (94)
T cd07690 85 EDKKEEV 91 (94)
T ss_pred CCccceE
Confidence 9987653
No 246
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.73 E-value=3.8e-08 Score=74.39 Aligned_cols=63 Identities=24% Similarity=0.350 Sum_probs=42.0
Q ss_pred cccEEEEeee-ccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEe
Q psy14896 209 LNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 276 (813)
Q Consensus 209 g~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a 276 (813)
|++++|.|.+ .+.|.+.+.|+|+++.+................ ..|.|.+. +.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~----~~L~i~~v-~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSST----SRLTISNV-TPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEE----EEEEESSC-TGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceee----eEEEEccC-CHHHCEEEEEEC
Confidence 6889999999 777888999999997653221111100000000 02777775 899999999987
No 247
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.71 E-value=7.2e-08 Score=77.58 Aligned_cols=70 Identities=16% Similarity=0.272 Sum_probs=49.8
Q ss_pred ccccEEEEeee-c----------cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEe
Q psy14896 208 ILNDITLSCYA-G----------GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 276 (813)
Q Consensus 208 ~g~~v~l~C~~-~----------g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a 276 (813)
+||.+.|.|.. . ..+...+.|||++..+..... +. ..+.|+...+..|.|..+ ..+|+|.|+|++
T Consensus 14 ~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~--~~-~~~~Ri~~~~~~Lwf~Pa-~~eDSG~Y~C~~ 89 (104)
T cd05896 14 AGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIE--II-FDGVRMSKEEDSIWFRPA-ELQDSGLYTCVL 89 (104)
T ss_pred CCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCc--cc-ccceeEEEeCCEEEEEeC-ChhhCeEEEEEE
Confidence 34889999996 1 113348999999865432211 00 112477778889999986 899999999999
Q ss_pred ecCce
Q psy14896 277 SNKFG 281 (813)
Q Consensus 277 ~n~~g 281 (813)
+|...
T Consensus 90 rN~t~ 94 (104)
T cd05896 90 RNSTY 94 (104)
T ss_pred CCCCc
Confidence 99865
No 248
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.69 E-value=1.7e-07 Score=75.69 Aligned_cols=65 Identities=14% Similarity=0.274 Sum_probs=50.2
Q ss_pred CcCCCCCCeEEEEEEecCCCCCeEEEEeCCccc--------CCCceee-----ecceEEEECCCCCCCCEEEEEEEEc
Q psy14896 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL--------PRNAYFE-----NFNRILTIPNVKVEDQGEYICRASN 745 (813)
Q Consensus 681 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l--------~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N 745 (813)
++.+.+|++++|+|.+.+.....+.|++.+..+ ..+.++. ....+|+|.+++.+|+|.|.|.+..
T Consensus 6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 367899999999999998877778888766432 2333332 2345799999999999999999975
No 249
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.67 E-value=1.6e-07 Score=77.51 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=55.4
Q ss_pred CceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEe-----eCCeEEEcCCccccCCee
Q psy14896 197 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-----SGGNLIINDPRQVEDRGS 271 (813)
Q Consensus 197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~ 271 (813)
+++.+.+| ++++|.|.+.+.|.+.+.|++.+..+.-... .....+.++.. .+.+|.|.+. +.+|+|.
T Consensus 5 ~~~~v~~G-----~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~L~I~~v-~~~DsG~ 76 (95)
T cd05717 5 QDVTVVEG-----GTATLKCRVKNNDNSSLQWSNPNQQTLYFND--KRALRDNRIQLVNFSANELSISISNV-SLSDEGR 76 (95)
T ss_pred CcEEEcCC-----CCEEEEEEECCCCCceEEEeCCCCcEEEecc--ccccccCcEEEEcCCCCeeEEEEccC-CcccCEE
Confidence 45666666 7799999999888999999976543211000 00112345544 1346788775 9999999
Q ss_pred EEEEeecCceeeEeeeeEEee
Q psy14896 272 YHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 272 Y~C~a~n~~g~~~s~~~~l~v 292 (813)
|+|.+.+.... +..+.|+|
T Consensus 77 Y~C~~~~~~~~--~~~~~~~v 95 (95)
T cd05717 77 YTCSLYTMPVQ--TAKATVTV 95 (95)
T ss_pred EEEEEecCCCc--eEEEEEEC
Confidence 99999976532 34455543
No 250
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.63 E-value=1.5e-07 Score=76.56 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=56.0
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCc-eeeecceEEEECCCCCCCCEEEEEEEEcCC-Cc--eEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFENFNRILTIPNVKVEDQGEYICRASNDR-SA--LESSVTIS 757 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-G~--~~~~~~l~ 757 (813)
..|..|++|+|.|... .|...+.|+|+|....... ........|.|.+++.+|+|.|+|.+.|.. +. .+..+.|.
T Consensus 11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~ 89 (91)
T cd05751 11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELV 89 (91)
T ss_pred CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEE
Confidence 4678999999999885 6677999999998654221 122335679999999999999999999862 21 23335555
Q ss_pred E
Q psy14896 758 I 758 (813)
Q Consensus 758 V 758 (813)
|
T Consensus 90 V 90 (91)
T cd05751 90 V 90 (91)
T ss_pred e
Confidence 4
No 251
>PHA03376 BARF1; Provisional
Probab=98.62 E-value=3.8e-07 Score=79.95 Aligned_cols=108 Identities=21% Similarity=0.381 Sum_probs=72.2
Q ss_pred cCCCCCCeEEEEEEec---CCCCCeEEEEeCCc----cc-C-----------CCc-eee----ecceEEEECCCCCCCCE
Q psy14896 682 EAPKAGDKVRLECVAF---GYPVPSYNWTRRGS----PL-P-----------RNA-YFE----NFNRILTIPNVKVEDQG 737 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~---g~P~p~i~W~k~g~----~l-~-----------~~~-~~~----~~~~~L~i~~v~~~d~G 737 (813)
+.+..|+.+.|+|... ..+...|.|+|.+. .+ . +.+ +++ .++-+|.|.+++.+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 5678999999999875 22445899999532 11 0 000 111 23457999999999999
Q ss_pred EEEEEEEcCCCceEE-----EEE---EEEEcC-CcccccCCceeecCCCeEEEEEEEcccCCceEEEEEC
Q psy14896 738 EYICRASNDRSALES-----SVT---ISIQAE-PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 798 (813)
Q Consensus 738 ~Y~C~a~N~~G~~~~-----~~~---l~V~~~-P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~ 798 (813)
.|+|...-....... ++. |.|+.. -.|+. -+...+.|.+-|.|.|.++|..|
T Consensus 101 tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~---------~~~~~i~C~sggfP~P~~~Wle~ 161 (221)
T PHA03376 101 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD---------FSVLTVTCTVNAFPHPHVQWLMP 161 (221)
T ss_pred eEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC---------CCeeEEEEecCCcCCchheeccc
Confidence 999999865433322 222 555431 12221 45668999988999999999865
No 252
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.62 E-value=1.4e-07 Score=75.28 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=46.9
Q ss_pred EEEEeeecc-CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceee-EeeeeE
Q psy14896 212 ITLSCYAGG-YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQ 289 (813)
Q Consensus 212 v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~ 289 (813)
+.|+|.+.| .|.+.|.|||+|+.+............+ ........|.+... ..+|.|.|+|+|.|..... ...+++
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~-~~~~~~s~L~i~~~-~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDG-KRETTVSTLPITPS-DHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCC-CeEEEEEEEEEeCc-eecCCCEEEEEEcCccCCCCcEEEEE
Confidence 789999986 7999999999998764321111000111 11111234555543 6778889999999865432 234444
Q ss_pred Ee
Q psy14896 290 LA 291 (813)
Q Consensus 290 l~ 291 (813)
|.
T Consensus 80 l~ 81 (82)
T cd05759 80 LD 81 (82)
T ss_pred Ec
Confidence 44
No 253
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.61 E-value=2.3e-07 Score=72.90 Aligned_cols=63 Identities=17% Similarity=0.301 Sum_probs=49.5
Q ss_pred ceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEee
Q psy14896 198 DVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS 277 (813)
Q Consensus 198 ~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~ 277 (813)
.+.+..| +++.|.|...+ +.+.+.|++||..+ ..+.++......|+|... +.+|+|.|.|.+.
T Consensus 5 ~~tv~~g-----~~v~L~C~~~s-~~A~v~W~~ng~~l----------~~~~r~~~~~~GLlI~~~-~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPG-----ADVVLPCQLRS-NLASPVWLFNGTPL----------NAQFSYRVGTDGLLILVT-SPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecC-----CCEEEECCCCC-CCccEEEEECCccc----------CCCcceEEeCCCCEEEEC-CHhhCEEEEEEEe
Confidence 3555555 77999999988 57799999999865 234566666666888885 8999999999998
No 254
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.58 E-value=3.7e-07 Score=77.06 Aligned_cols=75 Identities=21% Similarity=0.431 Sum_probs=57.1
Q ss_pred CCCeEEEEEEecCCC------CCeEEEEeCC---cc---c--CCCc----------ee-----eecceEEEECCCCCCCC
Q psy14896 686 AGDKVRLECVAFGYP------VPSYNWTRRG---SP---L--PRNA----------YF-----ENFNRILTIPNVKVEDQ 736 (813)
Q Consensus 686 ~G~~v~l~C~~~g~P------~p~i~W~k~g---~~---l--~~~~----------~~-----~~~~~~L~i~~v~~~d~ 736 (813)
.|++|+|.|.....| .+.|.|+|.. .. + ..+. +. ...+.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999998654 4699999973 11 1 0110 11 12356799999999999
Q ss_pred EEEEEEEEcCCCceEEEEEEEEEc
Q psy14896 737 GEYICRASNDRSALESSVTISIQA 760 (813)
Q Consensus 737 G~Y~C~a~N~~G~~~~~~~l~V~~ 760 (813)
|.|.|.+.|..+..+..+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999988889999999975
No 255
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.54 E-value=6e-07 Score=75.84 Aligned_cols=75 Identities=23% Similarity=0.397 Sum_probs=56.4
Q ss_pred CCCeEEEEEEecCCC------CCeEEEEeCCc---c----c-CC----------Cceee-----ecceEEEECCCCCCCC
Q psy14896 686 AGDKVRLECVAFGYP------VPSYNWTRRGS---P----L-PR----------NAYFE-----NFNRILTIPNVKVEDQ 736 (813)
Q Consensus 686 ~G~~v~l~C~~~g~P------~p~i~W~k~g~---~----l-~~----------~~~~~-----~~~~~L~i~~v~~~d~ 736 (813)
.|++|+|.|.+...| ...|.|+|... + + .. ..++. ....+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 34799999641 1 0 00 01111 1245799999999999
Q ss_pred EEEEEEEEcCCCceEEEEEEEEEc
Q psy14896 737 GEYICRASNDRSALESSVTISIQA 760 (813)
Q Consensus 737 G~Y~C~a~N~~G~~~~~~~l~V~~ 760 (813)
|.|.|.+.|..|..+..+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999999999999999864
No 256
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.54 E-value=5.8e-07 Score=72.23 Aligned_cols=84 Identities=17% Similarity=0.304 Sum_probs=57.3
Q ss_pred eeecCCCccccccEEEEeeeccCCCCe-EEEeecccccccccccccccC--CCccEEeeCCeEEEcCCccccCCeeEEEE
Q psy14896 199 VVFDLSKRSILNDITLSCYAGGYPNPS-YEWFKEDYVQDRLVANLIDPL--SDKRFTLSGGNLIINDPRQVEDRGSYHCK 275 (813)
Q Consensus 199 ~~v~~g~~~~g~~v~l~C~~~g~P~p~-v~W~k~g~~l~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~ 275 (813)
+.|.+| +.+.|.|.+.+.|.|+ +.|.+++..+.......+... ...+| ...|.+... +.+|+|.|+|.
T Consensus 13 ~~v~~g-----E~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY---~S~L~L~Rl-k~~E~G~YTf~ 83 (101)
T cd05860 13 IFVNAG-----ENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRY---VSELHLTRL-KGTEGGTYTFL 83 (101)
T ss_pred EEEECC-----CCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEE---EEEEEEeec-ChhhCcEEEEE
Confidence 445555 7799999999999997 999999986543221111000 00111 135777775 89999999999
Q ss_pred eecCceeeEeeeeEEee
Q psy14896 276 ASNKFGSIISESVQLAF 292 (813)
Q Consensus 276 a~n~~g~~~s~~~~l~v 292 (813)
|.|..+.+ +.++.|.|
T Consensus 84 a~N~~~~~-s~tF~l~v 99 (101)
T cd05860 84 VSNSDASA-SVTFNVYV 99 (101)
T ss_pred EECCCCeE-EEEEEEEE
Confidence 99998876 55565554
No 257
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.53 E-value=2.8e-07 Score=74.97 Aligned_cols=87 Identities=21% Similarity=0.336 Sum_probs=57.1
Q ss_pred CCceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccC
Q psy14896 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268 (813)
Q Consensus 189 ~P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 268 (813)
+|.|...|.. +|..| ++|+|.|... .|...+.|||+|..... .........+.+.|.+ ++.+|
T Consensus 2 kP~L~a~p~~-vV~~G-----~~VtL~C~~~-~~~~~f~l~k~g~~~~~---------~~~~~~~~~~~f~i~~-v~~~~ 64 (91)
T cd05751 2 KPSLWAEPSS-VVPLG-----KPVTLRCQGP-YGAVEYRLYREGSTFAV---------KKPPEPQNKAKFFIPS-MKREH 64 (91)
T ss_pred CCEEEecCCC-ccCCC-----CcEEEEEecC-CCCCEEEEEECCCCccc---------cccCCCceeEEEEccC-CChhH
Confidence 3667777753 55566 6699999986 47889999999974310 0000111234566666 58999
Q ss_pred CeeEEEEeecCc-e-eeEeeeeEEee
Q psy14896 269 RGSYHCKASNKF-G-SIISESVQLAF 292 (813)
Q Consensus 269 ~G~Y~C~a~n~~-g-~~~s~~~~l~v 292 (813)
+|.|+|.+.+.. + +..|..+.|.|
T Consensus 65 ~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 65 AGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred CEEEEEEEECCCCccCCCCCcEEEEe
Confidence 999999999862 2 33455566665
No 258
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.53 E-value=6.4e-07 Score=74.14 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=53.6
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCC--------C-----------cee-eecceEEEECCCCCCCCEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR--------N-----------AYF-ENFNRILTIPNVKVEDQGEYIC 741 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~--------~-----------~~~-~~~~~~L~i~~v~~~d~G~Y~C 741 (813)
..+.+|+++.|.|.....+...++|||....... . .+. -..+++|.|.+++.+|+|.|+|
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~ 87 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL 87 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence 5678999999999654333349999996322110 0 011 1225689999999999999999
Q ss_pred EEEcCC-CceEEEEEEEE
Q psy14896 742 RASNDR-SALESSVTISI 758 (813)
Q Consensus 742 ~a~N~~-G~~~~~~~l~V 758 (813)
.+.|.. ...+..+.|.|
T Consensus 88 ~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 88 QTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEeCCccEEEEEEEEEC
Confidence 999986 45566666654
No 259
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.53 E-value=6.7e-07 Score=75.04 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=56.0
Q ss_pred CCCeEEEEEEecCCC------------CCeEEEEeC--Ccc---cC-C------C----cee-------eecceEEEECC
Q psy14896 686 AGDKVRLECVAFGYP------------VPSYNWTRR--GSP---LP-R------N----AYF-------ENFNRILTIPN 730 (813)
Q Consensus 686 ~G~~v~l~C~~~g~P------------~p~i~W~k~--g~~---l~-~------~----~~~-------~~~~~~L~i~~ 730 (813)
.|++|+|.|.....+ .+.|.|+|- |.. +. . . .++ ...+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999997432 369999984 211 10 0 0 111 12467899999
Q ss_pred CCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896 731 VKVEDQGEYICRASNDRSALESSVTISIQA 760 (813)
Q Consensus 731 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 760 (813)
++.+|+|.|.|.+.+.....+..+.|.|.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999999888888888888875
No 260
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.52 E-value=6.8e-07 Score=73.99 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=51.9
Q ss_pred ccccEEEEeeeccCCCCeEEEeeccccc-----cccc----ccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEee
Q psy14896 208 ILNDITLSCYAGGYPNPSYEWFKEDYVQ-----DRLV----ANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKAS 277 (813)
Q Consensus 208 ~g~~v~l~C~~~g~P~p~v~W~k~g~~l-----~~~~----~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~ 277 (813)
+|++|.|.|.-.-.+...+.|||..... ..-. .....+....|..+ .+|+|+|.+. +.+|+|.|+|.+.
T Consensus 12 ~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v-~~~D~G~Y~~~v~ 90 (105)
T cd05774 12 EGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNV-TQKDTGFYTLQTI 90 (105)
T ss_pred CCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecC-CcccCEEEEEEEE
Confidence 3478999987533334499999964211 1000 00111223345444 4899999996 8999999999999
Q ss_pred cCceeeEeeeeEEe
Q psy14896 278 NKFGSIISESVQLA 291 (813)
Q Consensus 278 n~~g~~~s~~~~l~ 291 (813)
+.........+.|.
T Consensus 91 ~~~~~~~~~~v~l~ 104 (105)
T cd05774 91 TTNFQVEQATVHLQ 104 (105)
T ss_pred eCCccEEEEEEEEE
Confidence 87754434455554
No 261
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.52 E-value=4.9e-07 Score=70.09 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=50.5
Q ss_pred EEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEE
Q psy14896 212 ITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290 (813)
Q Consensus 212 v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l 290 (813)
+.|.|.+. ++|.+.|+|||++.++...... . ......+ ....+|.+... ..+|...|+|+|.|..-........|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~-~~~~~~~-t~~S~L~~~p~-~eDdG~~~~C~a~~~~l~~~~~~~~L 77 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-E-ETWSRMF-TVTSQLMLKVT-KEDDGVPVICLVDHPAVKDLQTQRYL 77 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc-e-eccCCCc-EEEEEEEEECc-hhhCCCEEEEEEcCcccCCceeeEEE
Confidence 78999996 5899999999999988532110 0 0111111 11234555543 46666689999999765445667777
Q ss_pred eeee
Q psy14896 291 AFGF 294 (813)
Q Consensus 291 ~v~~ 294 (813)
.|.|
T Consensus 78 ~V~y 81 (82)
T cd05883 78 EVQY 81 (82)
T ss_pred EEEE
Confidence 7765
No 262
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.51 E-value=5.6e-07 Score=73.85 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=57.3
Q ss_pred cccEEEEeeeccCCCCeEEEeeccccccccc--------ccccccCCCccEEe-eCCeEEEcCCccccCCeeEEEEeecC
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLV--------ANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNK 279 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~--------~~~~~~~~~~~~~~-~~~~l~i~~~~~~~d~G~Y~C~a~n~ 279 (813)
|++|+|.|.....+...|.|+|+........ ..........|..+ .+++|.|.+. +.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l-~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNL-TKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccC-CchhcEEEEEEEEcC
Confidence 6889999998766667999999875432111 01111223344444 4788999996 899999999999988
Q ss_pred ceeeEeeeeEEee
Q psy14896 280 FGSIISESVQLAF 292 (813)
Q Consensus 280 ~g~~~s~~~~l~v 292 (813)
.|......+.|.|
T Consensus 80 ~~~~~~~~~~l~v 92 (92)
T cd05741 80 NGVTENAKFFLRV 92 (92)
T ss_pred CCcEEEEEEEEEC
Confidence 7765555665543
No 263
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.50 E-value=7.9e-07 Score=74.21 Aligned_cols=72 Identities=24% Similarity=0.279 Sum_probs=51.4
Q ss_pred CCeEEEEEEecCCCC---CeEEEEeCCc-----------ccCC--C----ceee-------ecceEEEECCCCCCCCEEE
Q psy14896 687 GDKVRLECVAFGYPV---PSYNWTRRGS-----------PLPR--N----AYFE-------NFNRILTIPNVKVEDQGEY 739 (813)
Q Consensus 687 G~~v~l~C~~~g~P~---p~i~W~k~g~-----------~l~~--~----~~~~-------~~~~~L~i~~v~~~d~G~Y 739 (813)
|++|+|.|....... ..|.|+|... .... . .++. ....+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 789999999863221 3688887542 1110 0 1211 1235799999999999999
Q ss_pred EEEEEcCCCceEEEEEEEE
Q psy14896 740 ICRASNDRSALESSVTISI 758 (813)
Q Consensus 740 ~C~a~N~~G~~~~~~~l~V 758 (813)
+|.+.|..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998888888888877
No 264
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.50 E-value=9.2e-07 Score=68.58 Aligned_cols=71 Identities=18% Similarity=0.340 Sum_probs=52.6
Q ss_pred EEEEEEec-CCCCCeEEEEeCCcccCCCcee-------eecceEEEECCCCCCCCEEEEEEEEcCCC-ceEEEEEEEEEc
Q psy14896 690 VRLECVAF-GYPVPSYNWTRRGSPLPRNAYF-------ENFNRILTIPNVKVEDQGEYICRASNDRS-ALESSVTISIQA 760 (813)
Q Consensus 690 v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~~ 760 (813)
++|.|.+. +.|.+.|+|||+|.++...... ....++|.|..-..+|...|+|+|.|..= ..+.+..|.|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 68999998 5788899999999998764321 11235688866666777799999999742 356677777764
No 265
>smart00409 IG Immunoglobulin.
Probab=98.45 E-value=1.2e-06 Score=70.67 Aligned_cols=72 Identities=35% Similarity=0.630 Sum_probs=52.3
Q ss_pred cccEEEEeeeccCCCCeEEEeec-ccccccccccccccCCCccEEee----CCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSI 283 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~ 283 (813)
|+++.|.|.+.+.+.+.+.|+++ +..+. ...++... ..+|.|.+. +.+|+|.|+|.+.+..+..
T Consensus 9 g~~~~l~C~~~~~~~~~~~W~~~~~~~v~----------~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00409 9 GESVTLSCEVSGSPPPEVTWYKQGGKLLA----------ESGRFSVSRSGSNSTLTISNV-TPEDSGTYTCAATNSSGSA 77 (86)
T ss_pred CCeEEEEEEEccCCCCeEEEEECCCEEcC----------CCCcEEEEEcCCeeEEEEEee-ccccCeEEEEEEEcCCCeE
Confidence 37799999998878899999998 65542 12222322 246777775 8999999999999888776
Q ss_pred EeeeeEEee
Q psy14896 284 ISESVQLAF 292 (813)
Q Consensus 284 ~s~~~~l~v 292 (813)
... +.|.|
T Consensus 78 ~~~-~~l~V 85 (86)
T smart00409 78 SST-TTLTV 85 (86)
T ss_pred EEE-EEEEE
Confidence 333 66554
No 266
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.45 E-value=1.2e-06 Score=70.67 Aligned_cols=72 Identities=35% Similarity=0.630 Sum_probs=52.3
Q ss_pred cccEEEEeeeccCCCCeEEEeec-ccccccccccccccCCCccEEee----CCeEEEcCCccccCCeeEEEEeecCceee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKE-DYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSI 283 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~ 283 (813)
|+++.|.|.+.+.+.+.+.|+++ +..+. ...++... ..+|.|.+. +.+|+|.|+|.+.+..+..
T Consensus 9 g~~~~l~C~~~~~~~~~~~W~~~~~~~v~----------~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00410 9 GESVTLSCEVSGSPPPEVTWYKQGGKLLA----------ESGRFSVSRSGSNSTLTISNV-TPEDSGTYTCAATNSSGSA 77 (86)
T ss_pred CCeEEEEEEEccCCCCeEEEEECCCEEcC----------CCCcEEEEEcCCeeEEEEEee-ccccCeEEEEEEEcCCCeE
Confidence 37799999998878899999998 65542 12222322 246777775 8999999999999888776
Q ss_pred EeeeeEEee
Q psy14896 284 ISESVQLAF 292 (813)
Q Consensus 284 ~s~~~~l~v 292 (813)
... +.|.|
T Consensus 78 ~~~-~~l~V 85 (86)
T smart00410 78 SST-TTLTV 85 (86)
T ss_pred EEE-EEEEE
Confidence 333 66554
No 267
>PHA03376 BARF1; Provisional
Probab=98.42 E-value=2.4e-06 Score=75.00 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=76.1
Q ss_pred CceeecCCCeEEEecCC--CCCCcceEEEeeccc---cc------------cccCCccEEE---ccCccEEEeeeeecCC
Q psy14896 304 PEIGNQNWGKAMFCDPP--TNYPGVNYYWARDYF---PN------------FVEEDKRVFV---SYDGALYFSALEQIDA 363 (813)
Q Consensus 304 ~~~~~~~~~~~l~C~~~--~~~p~~~v~W~k~~~---~~------------~~~~~~~~~~---~~~~~L~i~~v~~~D~ 363 (813)
+.....|+.++|.|... ...+..+|+|+|.+. .+ ..+...+..+ ..+-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 56677899999999853 233668999999532 11 1123344444 2122799999999999
Q ss_pred eeeEEEEeeeccccCCCC-----CceeeEEccCCcccccccCCCCCCCCCcCCCCCCcEEEEEEEeecCCCeeeEeecCC
Q psy14896 364 GNYSCNVQSKVSDTGRNG-----PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS 438 (813)
Q Consensus 364 G~Y~C~a~n~~g~~~~~s-----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~~~ 438 (813)
|.|+|...-...+..... ...+|.|..... . ...-+..++.|.+.|.|.|.++|.-+.+
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~----d------------Fp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERS----Q------------FPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccc----c------------CCCCCeeEEEEecCCcCCchheeccccC
Confidence 999999986543322221 111233332110 0 1114678999998899999999988755
Q ss_pred c
Q psy14896 439 P 439 (813)
Q Consensus 439 ~ 439 (813)
.
T Consensus 164 ~ 164 (221)
T PHA03376 164 V 164 (221)
T ss_pred C
Confidence 4
No 268
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.41 E-value=1.4e-06 Score=71.57 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=52.4
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCcccCCC------------------cee-eecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRN------------------AYF-ENFNRILTIPNVKVEDQGEYICRASNDR 747 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~------------------~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 747 (813)
|++|+|.|.+...+...|.|+|+....... .++ ...+.+|.|.+++.+|+|.|.|.+.+..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 789999999987666799999976433111 011 1224679999999999999999999876
Q ss_pred Cc-eEEEEEEEE
Q psy14896 748 SA-LESSVTISI 758 (813)
Q Consensus 748 G~-~~~~~~l~V 758 (813)
|. ....+.|.|
T Consensus 81 ~~~~~~~~~l~v 92 (92)
T cd05741 81 GVTENAKFFLRV 92 (92)
T ss_pred CcEEEEEEEEEC
Confidence 54 455666553
No 269
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.39 E-value=3.8e-07 Score=71.59 Aligned_cols=58 Identities=41% Similarity=0.625 Sum_probs=43.0
Q ss_pred CCeEEEEEEecCCC-CCeEEEEeCCccc--CCCceeeecceEEEECCCCCCCCEEEEEEEEc
Q psy14896 687 GDKVRLECVAFGYP-VPSYNWTRRGSPL--PRNAYFENFNRILTIPNVKVEDQGEYICRASN 745 (813)
Q Consensus 687 G~~v~l~C~~~g~P-~p~i~W~k~g~~l--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 745 (813)
+..++|.|.+.+.| .+.++|+ +.... ..........++|.|.++..+|.|.|+|.|.|
T Consensus 15 ~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 15 GGSVTLTCSAEGGPPPPSISWY-DSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp TEEEEEEEEESSEESSEEEEEE-TEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeEEEEEEEccccCCeEEEEE-ecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 33399999999888 7899999 11111 11112234467899999999999999999987
No 270
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.37 E-value=2.5e-06 Score=71.95 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=56.1
Q ss_pred CCCeEEEEEEecCCC----------CCeEEEEeC--CcccC-----C-----C----ceee-------ecceEEEECCCC
Q psy14896 686 AGDKVRLECVAFGYP----------VPSYNWTRR--GSPLP-----R-----N----AYFE-------NFNRILTIPNVK 732 (813)
Q Consensus 686 ~G~~v~l~C~~~g~P----------~p~i~W~k~--g~~l~-----~-----~----~~~~-------~~~~~L~i~~v~ 732 (813)
.|++|+|.|.....+ ...|.|+|. +..+. . . .++. .....|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 489999999997644 257999995 22210 0 0 1211 134679999999
Q ss_pred CCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896 733 VEDQGEYICRASNDRSALESSVTISIQA 760 (813)
Q Consensus 733 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 760 (813)
.+|+|.|.|.+.......+..+.|.|.+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999999878889999999875
No 271
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.36 E-value=2.6e-06 Score=70.81 Aligned_cols=72 Identities=22% Similarity=0.458 Sum_probs=52.8
Q ss_pred CeEEEEEEecCCC---CCeEEEEeCCcc---------------cCC--Ccee--ee---cceEEEECCCCCCCCEEEEEE
Q psy14896 688 DKVRLECVAFGYP---VPSYNWTRRGSP---------------LPR--NAYF--EN---FNRILTIPNVKVEDQGEYICR 742 (813)
Q Consensus 688 ~~v~l~C~~~g~P---~p~i~W~k~g~~---------------l~~--~~~~--~~---~~~~L~i~~v~~~d~G~Y~C~ 742 (813)
++|+|.|.....+ ...|.|+|.... +.. ..+. .. .+.+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5789999998654 347999996531 000 0111 11 356899999999999999999
Q ss_pred EEc-CCCceEEEEEEEEE
Q psy14896 743 ASN-DRSALESSVTISIQ 759 (813)
Q Consensus 743 a~N-~~G~~~~~~~l~V~ 759 (813)
+.+ ..|.....+.|.|.
T Consensus 81 v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 81 FATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEeCCCCcEEEEEEEEeC
Confidence 975 67889999999873
No 272
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.35 E-value=1.4e-06 Score=71.67 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=57.9
Q ss_pred cccccEEEEeeecc-CCCCeEEEeecccccccccc-------cccccCCCccEEee--CCeEEEcCCccccCCeeEEEEe
Q psy14896 207 SILNDITLSCYAGG-YPNPSYEWFKEDYVQDRLVA-------NLIDPLSDKRFTLS--GGNLIINDPRQVEDRGSYHCKA 276 (813)
Q Consensus 207 ~~g~~v~l~C~~~g-~P~p~v~W~k~g~~l~~~~~-------~~~~~~~~~~~~~~--~~~l~i~~~~~~~d~G~Y~C~a 276 (813)
.+|++|+|.|.... .....|.|+|....+..... ...+..-..|+.+. +.+|.|.+. +.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~-~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNL-KMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCC-chHHCEEEEEEE
Confidence 35799999999864 45568999998543211110 01111222345543 467999886 899999999999
Q ss_pred ecCceeeEeeeeEEee
Q psy14896 277 SNKFGSIISESVQLAF 292 (813)
Q Consensus 277 ~n~~g~~~s~~~~l~v 292 (813)
.+..|......+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9888887777777765
No 273
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.34 E-value=1.3e-06 Score=74.26 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=50.8
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcc--c------------CCCceee------ecceEEEECCCCCCCCEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSP--L------------PRNAYFE------NFNRILTIPNVKVEDQGEYIC 741 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~--l------------~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C 741 (813)
..+.+|++|+|.|.+.+.+.+.+.|||.... . ....++. .....|+|.+++.+|+|.|.|
T Consensus 8 v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C 87 (109)
T cd04983 8 LSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFC 87 (109)
T ss_pred eEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEE
Confidence 6789999999999999878889999985321 0 0112221 134579999999999999999
Q ss_pred EEEcCCC
Q psy14896 742 RASNDRS 748 (813)
Q Consensus 742 ~a~N~~G 748 (813)
.+.+..+
T Consensus 88 ~~~~~~~ 94 (109)
T cd04983 88 ALSESGG 94 (109)
T ss_pred EEecCCC
Confidence 9997643
No 274
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.31 E-value=5.6e-06 Score=66.87 Aligned_cols=75 Identities=19% Similarity=0.334 Sum_probs=51.3
Q ss_pred CceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeC--C---eEEEcCCccccCCee
Q psy14896 197 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG--G---NLIINDPRQVEDRGS 271 (813)
Q Consensus 197 ~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~--~---~l~i~~~~~~~d~G~ 271 (813)
+++.+.+| +++.|+|.+.+.....+.|++.+..+.-.... .+..+.|+.... + +|.|.+. +.+|+|.
T Consensus 5 ~nvtv~~G-----~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~--~~~~d~Rf~~~~~~~~~~tL~I~~v-q~~D~G~ 76 (95)
T cd05881 5 EDVTVVEG-----EVAIISCRVKNNDDSVIQLLNPNRQTIYFRDV--RPLKDSRFQLVNFSSNELRVSLSNV-SLSDEGR 76 (95)
T ss_pred CceEEcCC-----CcEEEEEEEccCCccEEEEEecCCcEEEecCc--cccCCcCEEEEeCCCCEEEEEECcC-CcccCEE
Confidence 34566555 77999999998777889999888554211111 123455555332 2 4788775 9999999
Q ss_pred EEEEeecC
Q psy14896 272 YHCKASNK 279 (813)
Q Consensus 272 Y~C~a~n~ 279 (813)
|+|.+...
T Consensus 77 Y~Cqv~t~ 84 (95)
T cd05881 77 YFCQLYTD 84 (95)
T ss_pred EEEEEEcc
Confidence 99999854
No 275
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.31 E-value=3.8e-06 Score=70.89 Aligned_cols=83 Identities=23% Similarity=0.286 Sum_probs=53.2
Q ss_pred cccEEEEeeeccCC------CCeEEEeecccc---c-----ccccccccccCCCccEEee-----CCeEEEcCCccccCC
Q psy14896 209 LNDITLSCYAGGYP------NPSYEWFKEDYV---Q-----DRLVANLIDPLSDKRFTLS-----GGNLIINDPRQVEDR 269 (813)
Q Consensus 209 g~~v~l~C~~~g~P------~p~v~W~k~g~~---l-----~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~ 269 (813)
|++|+|.|.....| ...|.|||.... . ..............|+.+. +.+|.|.+. +.+|+
T Consensus 2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~Ds 80 (106)
T cd05877 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDL-RLEDY 80 (106)
T ss_pred CCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccC-ChHHC
Confidence 68899999986543 357999997521 0 0000001111223455542 236788885 89999
Q ss_pred eeEEEEeecCceeeEeeeeEEeee
Q psy14896 270 GSYHCKASNKFGSIISESVQLAFG 293 (813)
Q Consensus 270 G~Y~C~a~n~~g~~~s~~~~l~v~ 293 (813)
|.|+|.+.+..+.. ...+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~-~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDE-SVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccce-EEEEEEEEE
Confidence 99999999988865 666777764
No 276
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.31 E-value=3.8e-07 Score=71.56 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=45.6
Q ss_pred ccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEe
Q psy14896 573 LKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS 645 (813)
Q Consensus 573 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 645 (813)
..........+. ++|+|.+..+.+.+.++|+.... ............+++|.|.++..+|.|.|+|+|.|
T Consensus 6 ~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~--~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 6 VPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNP--SFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EESTSEEETTEE-EEEEEEESSEESSEEEEEETEEE--EEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EcCCCcEeecee-EEEEEEEccccCCeEEEEEecCC--ceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 333333333333 99999995444489999991110 01112223334456799999999999999999987
No 277
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.27 E-value=4.1e-06 Score=70.87 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=53.2
Q ss_pred cCCCCCCeEEEEEEecCC----CCCeEEE---------------EeCCcccCCC-----cee------eecceEEEECCC
Q psy14896 682 EAPKAGDKVRLECVAFGY----PVPSYNW---------------TRRGSPLPRN-----AYF------ENFNRILTIPNV 731 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~----P~p~i~W---------------~k~g~~l~~~-----~~~------~~~~~~L~i~~v 731 (813)
..+..|++++|.|..... +...|+| |++|...... .++ ...+.+|.|.++
T Consensus 8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv 87 (116)
T cd05879 8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL 87 (116)
T ss_pred EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence 457889999999999763 3458999 3344433211 122 134568999999
Q ss_pred CCCCCEEEEEEEEcCCCc--eEEEEEEEE
Q psy14896 732 KVEDQGEYICRASNDRSA--LESSVTISI 758 (813)
Q Consensus 732 ~~~d~G~Y~C~a~N~~G~--~~~~~~l~V 758 (813)
+.+|.|.|+|.+.|.-+. ....+.|.|
T Consensus 88 ~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 88 DYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred CcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 999999999999997553 334555543
No 278
>KOG0613|consensus
Probab=98.26 E-value=2e-05 Score=89.77 Aligned_cols=278 Identities=11% Similarity=0.003 Sum_probs=164.5
Q ss_pred EEeecCCCeeeEeecCCcCCCCceeccccceEEEcccccccceEEeCCCceEecccccccccCeEEEEEeeccCCCcEEE
Q psy14896 422 VAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW 501 (813)
Q Consensus 422 ~~~g~p~p~i~W~~~~~~l~~~~~~~~~~~~l~i~~~~~~g~y~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W 501 (813)
...|.|.+.+.|+.++..+....... +.....++...+.|.+.+.+.+.+.|
T Consensus 212 ~s~gqp~~~~~~~~~g~~i~~~~~~~----------------------------~s~t~e~s~~~i~~~l~~~~G~~~~~ 263 (1205)
T KOG0613|consen 212 VSAGQPEPLERWEILGELIAPGSAPS----------------------------MSVTLEASDRKIQLTLRAPRGPYSAH 263 (1205)
T ss_pred EecCCCccchhhhhcccccCCCCccc----------------------------cccccchhheeeeEEeecCCCchHHH
Confidence 33477999999999999886654322 11224567888999999988898999
Q ss_pred eeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEE-EEE--------------e
Q psy14896 502 FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ-LAF--------------G 566 (813)
Q Consensus 502 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~-l~v--------------~ 566 (813)
+.+....+ .....+.+..+.+. ...+.+.|+|...+..+........ +.+ .
T Consensus 264 ~~~~l~e~-------------~~~~~~~t~~i~~~-~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa 329 (1205)
T KOG0613|consen 264 ILGYLIEQ-------------RKHKGGNTKTIQND-GPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAA 329 (1205)
T ss_pred Hhcchhhh-------------cccCCCcccccccc-CCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhcc
Confidence 88773211 11223345666665 6777888888887776664322111 111 1
Q ss_pred ecccccc---cCCCceeccCCCceEEeCCCCCCCccE-EEEccCCCCCcccCCCeEEEee---CccEEEEeecccCCeeE
Q psy14896 567 FIGEFNL---KRAPEIGNQNWGKAMFCDPPTNYPGVN-YYWARDYFPNFVEEDKRVFVSY---DGALYFSALEQIDAGNY 639 (813)
Q Consensus 567 ~~p~~~~---~~~~~~~~~g~~~~l~C~~~~~~p~~~-v~W~k~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y 639 (813)
.++...+ .........+..+++.|.. .+.+.+. +.|++++............... ...+.|..+...+.+.|
T Consensus 330 ~~~~~~v~~~~~~~v~a~d~~~v~m~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~ 408 (1205)
T KOG0613|consen 330 RPPEVPVGLVRNLSVTARDNTLVEMPTAL-SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFT 408 (1205)
T ss_pred CCccccccccccceeccccCcceeecccc-cCCcCCchheeecccccccccccccccccccccCcchhhhhcCccccccc
Confidence 1111111 1111123345567899998 6777766 9999987543222221122222 23488999999999999
Q ss_pred EEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCC--CeEEEEEEecCCCCC--eEEEEeCCcccCC
Q psy14896 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG--DKVRLECVAFGYPVP--SYNWTRRGSPLPR 715 (813)
Q Consensus 640 ~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G--~~v~l~C~~~g~P~p--~i~W~k~g~~l~~ 715 (813)
+|.|.|..|...... ...|.+.+... .|..+..........+ +.+.+.|.+.++|.| .++|++++-+...
T Consensus 409 ~~~a~n~~g~~~~~~---~~~vs~~~~gt---~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~ 482 (1205)
T KOG0613|consen 409 RVPAVNKGGTEQTIA---ESTVSEEMPGT---QPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSD 482 (1205)
T ss_pred ccceeccCCcccccc---hhhcccccCCC---CCccccccccccccccCCcccccccCCCCccccceeEeeccCCccccc
Confidence 999999998754432 22333322111 1222222222333444 889999999988855 5556665554432
Q ss_pred Cc--eeeecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896 716 NA--YFENFNRILTIPNVKVEDQGEYICRASNDRS 748 (813)
Q Consensus 716 ~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 748 (813)
.. -....-.+|.+.-....|+|.|.-...-..|
T Consensus 483 ~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~ 517 (1205)
T KOG0613|consen 483 RSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQG 517 (1205)
T ss_pred ccccccccchhhheeeccCCCccchhhhhhhccCC
Confidence 21 1122244678888889999999655544333
No 279
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.25 E-value=3.6e-06 Score=71.76 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=50.6
Q ss_pred cCCCCCCeEEEEEEecCCC----CCeEEEEeC----Ccc--c---C------CCcee----------eecceEEEECCCC
Q psy14896 682 EAPKAGDKVRLECVAFGYP----VPSYNWTRR----GSP--L---P------RNAYF----------ENFNRILTIPNVK 732 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P----~p~i~W~k~----g~~--l---~------~~~~~----------~~~~~~L~i~~v~ 732 (813)
+.+.+|++++|.|.....+ ...|.|++. +.+ + . ...++ ...+.+|+|.+++
T Consensus 8 v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~ 87 (115)
T cd05880 8 VEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ 87 (115)
T ss_pred EEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence 5678999999999987543 246999852 111 1 0 01111 1124579999999
Q ss_pred CCCCEEEEEEEEcCCCc--eEEEEEEE
Q psy14896 733 VEDQGEYICRASNDRSA--LESSVTIS 757 (813)
Q Consensus 733 ~~d~G~Y~C~a~N~~G~--~~~~~~l~ 757 (813)
.+|+|.|.|.+.|..+. ....+.|.
T Consensus 88 ~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 88 PTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred hhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 99999999999987553 23445544
No 280
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.24 E-value=4.8e-06 Score=67.57 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=49.1
Q ss_pred cCCCCCCeEEEEEEecC-CCCCe--EEEEeCCcccCCCcee------eecceEEEECCCCCCCCE-EEEEEEEcCCCc
Q psy14896 682 EAPKAGDKVRLECVAFG-YPVPS--YNWTRRGSPLPRNAYF------ENFNRILTIPNVKVEDQG-EYICRASNDRSA 749 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g-~P~p~--i~W~k~g~~l~~~~~~------~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~G~ 749 (813)
..+.+|+.++|.|.+.| .|.+. |+|||++..|...... .....+|++.. ..+|.| .|+|+|.++++.
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~-~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITV-DREDHGANFSCETELDLRP 87 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEec-chhhCCcEEEEEEEeccCc
Confidence 34689999999999994 77775 7999999998654322 11245677754 455555 999999998764
No 281
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.24 E-value=4.7e-06 Score=70.82 Aligned_cols=65 Identities=25% Similarity=0.369 Sum_probs=48.9
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCc--ccC------------C----Cceee-----ecceEEEECCCCCCCCEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGS--PLP------------R----NAYFE-----NFNRILTIPNVKVEDQGE 738 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~--~l~------------~----~~~~~-----~~~~~L~i~~v~~~d~G~ 738 (813)
..+.+|++++|.|.+.+ +.+.+.|||... .+. . ..++. .....|.|.+++.+|+|.
T Consensus 8 ~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~ 86 (110)
T cd05899 8 LIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAV 86 (110)
T ss_pred eEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEE
Confidence 67899999999999988 778999999532 110 0 11221 124579999999999999
Q ss_pred EEEEEEcCC
Q psy14896 739 YICRASNDR 747 (813)
Q Consensus 739 Y~C~a~N~~ 747 (813)
|.|.+.+..
T Consensus 87 Y~Ca~~~~~ 95 (110)
T cd05899 87 YLCASSLGG 95 (110)
T ss_pred EEEEeeCCC
Confidence 999998753
No 282
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.23 E-value=3.7e-06 Score=71.01 Aligned_cols=66 Identities=26% Similarity=0.370 Sum_probs=48.9
Q ss_pred CCCCCCeEEEEEEecCC-CCCeEEEEeCCcc-----cC------------CCceee----e--cceEEEECCCCCCCCEE
Q psy14896 683 APKAGDKVRLECVAFGY-PVPSYNWTRRGSP-----LP------------RNAYFE----N--FNRILTIPNVKVEDQGE 738 (813)
Q Consensus 683 ~~~~G~~v~l~C~~~g~-P~p~i~W~k~g~~-----l~------------~~~~~~----~--~~~~L~i~~v~~~d~G~ 738 (813)
.+.+|++++|.|.+.+. +...+.|+|.... +. ...++. . ...+|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999976 6679999995431 00 011111 1 34589999999999999
Q ss_pred EEEEEEcCCC
Q psy14896 739 YICRASNDRS 748 (813)
Q Consensus 739 Y~C~a~N~~G 748 (813)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999998765
No 283
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.23 E-value=3e-06 Score=70.03 Aligned_cols=65 Identities=22% Similarity=0.453 Sum_probs=49.9
Q ss_pred CCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCce-e---e------ecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896 685 KAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAY-F---E------NFNRILTIPNVKVEDQGEYICRASNDRSA 749 (813)
Q Consensus 685 ~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~-~---~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 749 (813)
..|+.++|.|.+.|+ |. +.|+|++||..+..... . . ...+.|.|.....+|.|.|+|+|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468999999999998 64 58999999998865542 1 1 11345778777778999999999997543
No 284
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.23 E-value=3.5e-06 Score=69.36 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=53.7
Q ss_pred CCCCeEEEEEEecC-CCCCeEEEEeCCcccC--C-----C----------cee--eecceEEEECCCCCCCCEEEEEEEE
Q psy14896 685 KAGDKVRLECVAFG-YPVPSYNWTRRGSPLP--R-----N----------AYF--ENFNRILTIPNVKVEDQGEYICRAS 744 (813)
Q Consensus 685 ~~G~~v~l~C~~~g-~P~p~i~W~k~g~~l~--~-----~----------~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~ 744 (813)
..|++|+|.|.... .....|.|+|....+. . . .++ ...+.+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36999999998864 4455899998643211 0 0 011 1234689999999999999999999
Q ss_pred cCCCce-EEEEEEEE
Q psy14896 745 NDRSAL-ESSVTISI 758 (813)
Q Consensus 745 N~~G~~-~~~~~l~V 758 (813)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 887764 66777776
No 285
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.21 E-value=8e-06 Score=68.90 Aligned_cols=84 Identities=23% Similarity=0.361 Sum_probs=53.0
Q ss_pred cccEEEEeeeccCC------CCeEEEeecc---c-c--ccccccc--ccccCCCccEEe-----eCCeEEEcCCccccCC
Q psy14896 209 LNDITLSCYAGGYP------NPSYEWFKED---Y-V--QDRLVAN--LIDPLSDKRFTL-----SGGNLIINDPRQVEDR 269 (813)
Q Consensus 209 g~~v~l~C~~~g~P------~p~v~W~k~g---~-~--l~~~~~~--~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~ 269 (813)
|++|+|.|.....| .+.|.|+|.. . + +...... ........+... .+.+|.|.+. +.+|+
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v-~~sD~ 80 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDL-RLEDS 80 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCC-CHHHC
Confidence 68899999987643 4699999973 1 1 1000000 011112122322 2456888885 99999
Q ss_pred eeEEEEeecCceeeEeeeeEEeeee
Q psy14896 270 GSYHCKASNKFGSIISESVQLAFGF 294 (813)
Q Consensus 270 G~Y~C~a~n~~g~~~s~~~~l~v~~ 294 (813)
|.|+|.+.+..+.. +..++|.|..
T Consensus 81 G~Y~C~v~~~~~~~-~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDE-QDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCce-EEEEEEEEEE
Confidence 99999999876654 6778877753
No 286
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.20 E-value=3e-06 Score=67.28 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=43.7
Q ss_pred ceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEe-eCcc------EEEEeecccCCeeEEEEEEeeecCcc
Q psy14896 586 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGA------LYFSALEQIDAGNYSCNVQSKVSDTG 651 (813)
Q Consensus 586 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~------L~i~~~~~~d~G~Y~C~a~n~~g~~~ 651 (813)
+.|.|.+..++|.+.|+|++++.++. ........ .+++ |.+.....+|.+.|+|+|.|......
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~--~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~~ 72 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELK--GVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKST 72 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEcc--CceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCCC
Confidence 57999998888999999999997643 22112221 2333 44444445667899999999886643
No 287
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.20 E-value=9e-06 Score=66.38 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=47.1
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCC----ceeeecceEEEECCCCCCCCEEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN----AYFENFNRILTIPNVKVEDQGEYICRAS 744 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 744 (813)
..+.+|++|+|.|.... +.-.+.|+|+|...... .........+.|..++.+|+|.|.|...
T Consensus 10 ~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 10 PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 46789999999998765 45589999998764321 1112234579999999999999999975
No 288
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.17 E-value=1.4e-05 Score=66.70 Aligned_cols=74 Identities=22% Similarity=0.399 Sum_probs=55.2
Q ss_pred CCeEEEEEEecCCC-----------CCeEEEEeC-----CcccCC-------Cc----------ee-------eecceEE
Q psy14896 687 GDKVRLECVAFGYP-----------VPSYNWTRR-----GSPLPR-------NA----------YF-------ENFNRIL 726 (813)
Q Consensus 687 G~~v~l~C~~~g~P-----------~p~i~W~k~-----g~~l~~-------~~----------~~-------~~~~~~L 726 (813)
|.+++|.|...-.| .+.|.|+|- |..... +. +. ...+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78899999998544 238999984 221110 00 11 1235789
Q ss_pred EECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896 727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760 (813)
Q Consensus 727 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 760 (813)
.|.+++.+|+|.|.|.+.+.....+..+.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999998999999999874
No 289
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.17 E-value=1.8e-05 Score=64.75 Aligned_cols=71 Identities=20% Similarity=0.396 Sum_probs=50.6
Q ss_pred eEEEEEEecCC-CCC---eEEEEeCC--cc--c---CC-------C---cee-----eecceEEEECCCCCCCCEEEEEE
Q psy14896 689 KVRLECVAFGY-PVP---SYNWTRRG--SP--L---PR-------N---AYF-----ENFNRILTIPNVKVEDQGEYICR 742 (813)
Q Consensus 689 ~v~l~C~~~g~-P~p---~i~W~k~g--~~--l---~~-------~---~~~-----~~~~~~L~i~~v~~~d~G~Y~C~ 742 (813)
+|+|.|..... |.. .|+|.|.. .. + .. . .+. ...+.+|.|.+++.+|.|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68999999743 211 69998842 11 1 00 0 011 11246899999999999999999
Q ss_pred EEc-CCCceEEEEEEEEE
Q psy14896 743 ASN-DRSALESSVTISIQ 759 (813)
Q Consensus 743 a~N-~~G~~~~~~~l~V~ 759 (813)
+.| ..|..+..+.|+|.
T Consensus 82 v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 82 FATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEeCCCCCeEEEEEEEEC
Confidence 999 78989999999883
No 290
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.16 E-value=5e-06 Score=65.94 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=44.6
Q ss_pred ceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeC-cc------EEEEeecccCCeeEEEEEEeeecCcc
Q psy14896 586 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GA------LYFSALEQIDAGNYSCNVQSKVSDTG 651 (813)
Q Consensus 586 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~-~~------L~i~~~~~~d~G~Y~C~a~n~~g~~~ 651 (813)
++|+|.+..++|.+.|+|+++|.++... ........+ ++ |.|.....+|...|+|+|.|......
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~-~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~ 73 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGA-PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDS 73 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCc-ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCC
Confidence 5799999888899999999999764321 112222333 33 44444556678899999999886543
No 291
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.16 E-value=5.3e-06 Score=65.85 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=43.0
Q ss_pred eEEEecCCCCCCcceEEEeeccccccccCCccEEEc-cCcc------EEEeeeeecCCeeeEEEEeeeccccC
Q psy14896 313 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGA------LYFSALEQIDAGNYSCNVQSKVSDTG 378 (813)
Q Consensus 313 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~------L~i~~v~~~D~G~Y~C~a~n~~g~~~ 378 (813)
+.|.|.+.+++|.++|+|+++++++.. ....... .+++ |.+.....+|.+.|+|+|.|......
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~~ 72 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKG--VKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKST 72 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccC--ceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCCC
Confidence 479999988899999999999988632 1122222 2232 33433344556799999999876543
No 292
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.15 E-value=1.5e-05 Score=66.92 Aligned_cols=83 Identities=17% Similarity=0.279 Sum_probs=51.7
Q ss_pred cccEEEEeeeccCC------------CCeEEEeecc--cccc---cccc-cccccCCCccEEe-------eCCeEEEcCC
Q psy14896 209 LNDITLSCYAGGYP------------NPSYEWFKED--YVQD---RLVA-NLIDPLSDKRFTL-------SGGNLIINDP 263 (813)
Q Consensus 209 g~~v~l~C~~~g~P------------~p~v~W~k~g--~~l~---~~~~-~~~~~~~~~~~~~-------~~~~l~i~~~ 263 (813)
|++|+|.|.....+ .+.|.|+|-. ++.. .... ..+...-..|..+ .+.+|.|.+.
T Consensus 2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl 81 (112)
T cd05900 2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL 81 (112)
T ss_pred CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence 68899999986432 4699999953 2111 0000 0111222235554 2457888886
Q ss_pred ccccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896 264 RQVEDRGSYHCKASNKFGSIISESVQLAFG 293 (813)
Q Consensus 264 ~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~ 293 (813)
+.+|+|.|+|.+.+..... +..+.|.|.
T Consensus 82 -~~sDsG~Y~C~V~~g~~~~-~~~v~l~v~ 109 (112)
T cd05900 82 -RSNDSGTYRCEVMHGIEDN-YDTVEVQVK 109 (112)
T ss_pred -ccccCEEEEEEEecCCCCc-eeEEEEEEE
Confidence 8999999999999765544 555666654
No 293
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.13 E-value=8.1e-06 Score=64.74 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=45.3
Q ss_pred eEEEecCCCCCCcceEEEeeccccccccCCccEEEccC-ccEE------EeeeeecCCeeeEEEEeeeccccCCCC
Q psy14896 313 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALY------FSALEQIDAGNYSCNVQSKVSDTGRNG 381 (813)
Q Consensus 313 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~-~~L~------i~~v~~~D~G~Y~C~a~n~~g~~~~~s 381 (813)
++|.|.+.+++|.++|+|++||+++.... ..+....+ ++++ |.....+|...|+|+|.+........+
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~ 76 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRS 76 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcc-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCce
Confidence 57999998899999999999998753322 22333334 3433 333335566799999998876443333
No 294
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.13 E-value=1.3e-05 Score=66.89 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=54.2
Q ss_pred CCCeEEEEEEecCCC-------CCeEEEEeCC-----ccc----CCCc----------eee-------ecceEEEECCCC
Q psy14896 686 AGDKVRLECVAFGYP-------VPSYNWTRRG-----SPL----PRNA----------YFE-------NFNRILTIPNVK 732 (813)
Q Consensus 686 ~G~~v~l~C~~~g~P-------~p~i~W~k~g-----~~l----~~~~----------~~~-------~~~~~L~i~~v~ 732 (813)
.|++|+|.|...-.| .+.|.|.|.. ..+ ..+. +.. ..+.+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378999999966333 3689999851 111 0110 111 135689999999
Q ss_pred CCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896 733 VEDQGEYICRASNDRSALESSVTISIQA 760 (813)
Q Consensus 733 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 760 (813)
.+|+|.|.|.+.......+..+.|.|.+
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999777788899998874
No 295
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.12 E-value=1e-05 Score=69.39 Aligned_cols=77 Identities=21% Similarity=0.430 Sum_probs=50.6
Q ss_pred cCCCCCCeEEEEEEecCCC----CCeEEEEeCCc----c--c---------C-CCceee----------ecceEEEECCC
Q psy14896 682 EAPKAGDKVRLECVAFGYP----VPSYNWTRRGS----P--L---------P-RNAYFE----------NFNRILTIPNV 731 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P----~p~i~W~k~g~----~--l---------~-~~~~~~----------~~~~~L~i~~v 731 (813)
..+.+|++|+|.|...... ...|.|++... + + . ...++. ..+.+|+|.++
T Consensus 8 v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 87 (116)
T cd05715 8 VYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNL 87 (116)
T ss_pred EEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeC
Confidence 5678999999999986432 24699987321 0 0 0 111111 12357999999
Q ss_pred CCCCCEEEEEEEEcCCCc--eEEEEEEEE
Q psy14896 732 KVEDQGEYICRASNDRSA--LESSVTISI 758 (813)
Q Consensus 732 ~~~d~G~Y~C~a~N~~G~--~~~~~~l~V 758 (813)
+.+|+|.|.|.+.|.-+. ....+.|.|
T Consensus 88 ~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 88 QFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred CcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 999999999999987443 233455543
No 296
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.12 E-value=5.5e-06 Score=65.53 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=44.3
Q ss_pred ceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeeecCcc
Q psy14896 586 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVSDTG 651 (813)
Q Consensus 586 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~g~~~ 651 (813)
++|+|.+..++|.+.|+|+|+|.++.-..........+++ |.|..-..+|...|+|+|.|..-...
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~~ 73 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNAT 73 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCCC
Confidence 5799999888999999999999863211111111122333 55555556778899999999876543
No 297
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.12 E-value=2.2e-05 Score=66.72 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=50.7
Q ss_pred CCceeecCCCccccccEEEEeeeccCCCCeEEEeecccc--ccccccccc--ccCCCccEEee------CCeEEEcCCcc
Q psy14896 196 PTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYV--QDRLVANLI--DPLSDKRFTLS------GGNLIINDPRQ 265 (813)
Q Consensus 196 p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~--l~~~~~~~~--~~~~~~~~~~~------~~~l~i~~~~~ 265 (813)
|..+.+.+| ++|.|.|.+.+.+.+.+.|||.... ......... ......|+.+. .-+|.|.+. +
T Consensus 5 ~~~v~~~~G-----~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~-~ 78 (109)
T cd04983 5 PQSLSVQEG-----ENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAA-Q 78 (109)
T ss_pred CCceEEcCC-----CCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCC-C
Confidence 455666666 7799999998878889999996421 100000000 01233455432 225777775 9
Q ss_pred ccCCeeEEEEeecCc
Q psy14896 266 VEDRGSYHCKASNKF 280 (813)
Q Consensus 266 ~~d~G~Y~C~a~n~~ 280 (813)
.+|+|.|.|.+.+..
T Consensus 79 ~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 79 LSDSAVYFCALSESG 93 (109)
T ss_pred HHHCEEEEEEEecCC
Confidence 999999999999754
No 298
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.11 E-value=2.4e-05 Score=60.40 Aligned_cols=76 Identities=14% Similarity=0.221 Sum_probs=54.2
Q ss_pred cCCCCCCeEEEEEEecCCC--CCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYP--VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
..+..|++++|+|+....+ .+.|+|.-.+....... .....+|.+..++..|+|..+|.++-+.-.....+.|.|.
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~--~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL--NQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec--cCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 3467899999999997544 45999998766543211 2346789999999999999999997443333445555553
No 299
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.11 E-value=5.9e-06 Score=67.06 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=53.3
Q ss_pred ccccCCCceeccCCCceEEeCCCCCCCccE--EEEccCCCCCcccCCCe---EEEeeCccEEEEeecccCCeeEEEEEEe
Q psy14896 571 FNLKRAPEIGNQNWGKAMFCDPPTNYPGVN--YYWARDYFPNFVEEDKR---VFVSYDGALYFSALEQIDAGNYSCNVQS 645 (813)
Q Consensus 571 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~--v~W~k~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 645 (813)
+.+...+..+.+|+.++|+|.+..+.|.+. |+|||++..+....... -......+|++..-..+|.-.|+|+|.+
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l 83 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETEL 83 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEe
Confidence 334556667889999999999988999987 79999987642211000 0011223477664445555599999998
Q ss_pred eecCc
Q psy14896 646 KVSDT 650 (813)
Q Consensus 646 ~~g~~ 650 (813)
..+..
T Consensus 84 ~l~~~ 88 (100)
T cd05755 84 DLRPE 88 (100)
T ss_pred ccCcc
Confidence 87653
No 300
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.10 E-value=5.7e-06 Score=68.33 Aligned_cols=71 Identities=21% Similarity=0.415 Sum_probs=44.0
Q ss_pred cccEEEEeeeccC-C-CCeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896 209 LNDITLSCYAGGY-P-NPSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281 (813)
Q Consensus 209 g~~v~l~C~~~g~-P-~p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g 281 (813)
|+.++|.|.+.|. | .+.|+|+|||..+..... .......+..+.. ...|.+... ..+|.|.|+|+|.+...
T Consensus 13 ~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~-~s~l~v~~~-~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 13 GGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSV-SSQLTVSPS-DWNSGDTYTCVVTHESL 86 (95)
T ss_pred CCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEE-EEEEEECHH-HhCCCCCEEEEEEeCCC
Confidence 4679999999986 6 468999999987743321 1111122222221 112333332 34699999999998654
No 301
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.09 E-value=1.7e-05 Score=65.83 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=49.8
Q ss_pred ccEEEEeeeccCC---CCeEEEeecccccccc-------cccccccCCCccEEee-----CCeEEEcCCccccCCeeEEE
Q psy14896 210 NDITLSCYAGGYP---NPSYEWFKEDYVQDRL-------VANLIDPLSDKRFTLS-----GGNLIINDPRQVEDRGSYHC 274 (813)
Q Consensus 210 ~~v~l~C~~~g~P---~p~v~W~k~g~~l~~~-------~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~G~Y~C 274 (813)
++|+|.|.....+ ...|.|+|....-... ....+......|..+. +.+|.|.+. +.+|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNL-RLEDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccC-CcccCEEEEE
Confidence 4599999997644 4479999976420000 0011112223344332 457888885 8999999999
Q ss_pred Eeec-CceeeEeeeeEEee
Q psy14896 275 KASN-KFGSIISESVQLAF 292 (813)
Q Consensus 275 ~a~n-~~g~~~s~~~~l~v 292 (813)
.+.+ ..|.. ...+.|.|
T Consensus 80 ~v~~~~~g~~-~~~~~l~V 97 (98)
T cd05718 80 EFATFPQGNR-QKVTTLTV 97 (98)
T ss_pred EEEeCCCCcE-EEEEEEEe
Confidence 9975 45554 55566665
No 302
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.09 E-value=1.8e-05 Score=70.55 Aligned_cols=81 Identities=15% Similarity=0.302 Sum_probs=61.3
Q ss_pred cCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccC----------C--Cceeee-----cceEEEECCCCCCCCEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLP----------R--NAYFEN-----FNRILTIPNVKVEDQGEYICRA 743 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~----------~--~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a 743 (813)
..|.+|++|+|.|... +...+.|+|+|....+. + .++.+. ....|+|.+++.+|+|.|.|..
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 4578999999999985 66678999999754321 0 012221 3568999999999999999998
Q ss_pred Ec-CCC-ceEEEEEEEEEcCC
Q psy14896 744 SN-DRS-ALESSVTISIQAEP 762 (813)
Q Consensus 744 ~N-~~G-~~~~~~~l~V~~~P 762 (813)
.- +.| ..+....|+|..+-
T Consensus 105 ~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EecCCCCCceeEEEEEEEchh
Confidence 63 346 78899999998753
No 303
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.09 E-value=9.7e-06 Score=68.63 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=50.8
Q ss_pred ceeccCCCceEEeCCCCC---CCccEEEEc---------------cCCCCCc---ccCCCeEEEe-----eCccEEEEee
Q psy14896 578 EIGNQNWGKAMFCDPPTN---YPGVNYYWA---------------RDYFPNF---VEEDKRVFVS-----YDGALYFSAL 631 (813)
Q Consensus 578 ~~~~~g~~~~l~C~~~~~---~p~~~v~W~---------------k~~~~~~---~~~~~~~~~~-----~~~~L~i~~~ 631 (813)
..+..|+.++|.|..... .+...|+|. ++|.+.. ..-..|+... .+.+|.|.++
T Consensus 8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv 87 (116)
T cd05879 8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL 87 (116)
T ss_pred EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence 456789999999998432 245789993 2333211 0111355442 3457999999
Q ss_pred cccCCeeEEEEEEeeecCccc
Q psy14896 632 EQIDAGNYSCNVQSKVSDTGR 652 (813)
Q Consensus 632 ~~~d~G~Y~C~a~n~~g~~~~ 652 (813)
+.+|.|.|+|.+.|.-+..+.
T Consensus 88 ~~sD~G~Y~C~v~n~p~~~~~ 108 (116)
T cd05879 88 DYTDNGTFTCDVKNPPDIVGK 108 (116)
T ss_pred CcccCEEEEEEEEcCCCcCCc
Confidence 999999999999998765443
No 304
>KOG1480|consensus
Probab=98.08 E-value=2.5e-06 Score=90.70 Aligned_cols=186 Identities=19% Similarity=0.293 Sum_probs=117.8
Q ss_pred CceeeCCCceeecCCCccccccEEEEeeeccCCCC----eEEEeecccccccccccccccCCCccEEeeCCeEEEcCCcc
Q psy14896 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP----SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQ 265 (813)
Q Consensus 190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p----~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 265 (813)
|.|+.+|.+..+..+ .++.|.|.+...|.. .=.|..+.+-... ...++.++..+. .-...|... +
T Consensus 25 ~~~~~~p~~~yii~~-----~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~---~~~d~tsg~~~~--~~si~Isr~-~ 93 (909)
T KOG1480|consen 25 PHFTTEPKSAYIIKN-----KPLRLQCKANPATQIRFKCNSEWVHQSRHEKL---EGTDETSGLGVR--EVSIDISRQ-Q 93 (909)
T ss_pred ceeeecCCccceecC-----CCccceecCCcccccccccChhhhcCccceee---eccCcccceeEE--eeeeeeehh-h
Confidence 689999998888777 559999998643322 2235444432100 011111111111 112233322 2
Q ss_pred ccCCe-----eEEEEeecCceeeEeeeeEEeeeeeccccc-CCCCceeecCCCeEEEecCCCCCCcceEEEeeccccccc
Q psy14896 266 VEDRG-----SYHCKASNKFGSIISESVQLAFGFIGEFNL-KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV 339 (813)
Q Consensus 266 ~~d~G-----~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~-~~~~~~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~~~~ 339 (813)
.++.| .-.|.|....|...+..+.+++.+...+.. .+.-..+..+...++.|..+.+.|...++|+|++..+
T Consensus 94 v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~-- 171 (909)
T KOG1480|consen 94 VETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVI-- 171 (909)
T ss_pred hhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCC--
Confidence 23322 345667778886666666666666555333 3555667777778999999999999999999999874
Q ss_pred cCCccEEEccCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEE
Q psy14896 340 EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV 388 (813)
Q Consensus 340 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v 388 (813)
..+..+....+..|.|..+...|.|+|+|+|.|..+........+.+.|
T Consensus 172 ~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv 220 (909)
T KOG1480|consen 172 DPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYV 220 (909)
T ss_pred CccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEEE
Confidence 3355666667889999999999999999999998875444333333333
No 305
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.08 E-value=2.3e-05 Score=66.14 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=52.1
Q ss_pred cccEEEEeeeccCC----------CCeEEEeecc--cccccc--cccc--cccCCCccEEee-------CCeEEEcCCcc
Q psy14896 209 LNDITLSCYAGGYP----------NPSYEWFKED--YVQDRL--VANL--IDPLSDKRFTLS-------GGNLIINDPRQ 265 (813)
Q Consensus 209 g~~v~l~C~~~g~P----------~p~v~W~k~g--~~l~~~--~~~~--~~~~~~~~~~~~-------~~~l~i~~~~~ 265 (813)
|++|+|.|.....+ ...|.|||.. +...-. .... ....-..|..+. +.+|.|.+. +
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l-~ 80 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRL-R 80 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCC-C
Confidence 68899999997543 2579999963 221100 0001 112222355541 345888885 9
Q ss_pred ccCCeeEEEEeecCceeeEeeeeEEeeee
Q psy14896 266 VEDRGSYHCKASNKFGSIISESVQLAFGF 294 (813)
Q Consensus 266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~ 294 (813)
.+|+|.|.|.+....... ...++|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~-~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDE-QDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcc-eEEEEEEEEE
Confidence 999999999998754433 5567777653
No 306
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.06 E-value=2.8e-05 Score=64.44 Aligned_cols=70 Identities=23% Similarity=0.419 Sum_probs=50.2
Q ss_pred eEEEEEEecCCC---CCeEEEEeCCc---c--cC-----------C---Cc-eee----ecceEEEECCCCCCCCEEEEE
Q psy14896 689 KVRLECVAFGYP---VPSYNWTRRGS---P--LP-----------R---NA-YFE----NFNRILTIPNVKVEDQGEYIC 741 (813)
Q Consensus 689 ~v~l~C~~~g~P---~p~i~W~k~g~---~--l~-----------~---~~-~~~----~~~~~L~i~~v~~~d~G~Y~C 741 (813)
+|+|.|.....+ ...|.|+|... + +. . ++ ++. ..+..|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999987544 34899999421 1 10 0 00 111 125579999999999999999
Q ss_pred EEEc-CCCceEEEEEEEE
Q psy14896 742 RASN-DRSALESSVTISI 758 (813)
Q Consensus 742 ~a~N-~~G~~~~~~~l~V 758 (813)
.+.| ..|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 6787788888887
No 307
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.05 E-value=3.1e-05 Score=65.26 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=49.4
Q ss_pred eeCCCceeecCCCccccccEEEEeeeccCC-CCeEEEeecc--cccccccc--cccccCCCccEEee----CCeEEEcCC
Q psy14896 193 IKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS----GGNLIINDP 263 (813)
Q Consensus 193 ~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P-~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~----~~~l~i~~~ 263 (813)
...|..+.+.+| ++|+|.|.+.+.+ ...+.|||.. +....... .........++... ..+|.|.+.
T Consensus 4 ~Q~p~~~~v~~G-----~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~ 78 (106)
T cd04980 4 TQSPATLSVSPG-----ESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRV 78 (106)
T ss_pred EECCCcEEECCC-----CCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCC
Confidence 344566777666 7799999997755 6789999864 21111000 00011112344432 124777775
Q ss_pred ccccCCeeEEEEeecC
Q psy14896 264 RQVEDRGSYHCKASNK 279 (813)
Q Consensus 264 ~~~~d~G~Y~C~a~n~ 279 (813)
+.+|+|.|.|.+.+.
T Consensus 79 -~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 79 -EPEDAAVYYCQQYGT 93 (106)
T ss_pred -ChHHCEEEEEEEeCC
Confidence 899999999999754
No 308
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.05 E-value=2.9e-05 Score=64.08 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=51.6
Q ss_pred CCeEEEEEEecCCCCC-eEEEEeCCcc----cC-----CCc----ee---------eecceEEEECCCCCCCCEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVP-SYNWTRRGSP----LP-----RNA----YF---------ENFNRILTIPNVKVEDQGEYICRA 743 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p-~i~W~k~g~~----l~-----~~~----~~---------~~~~~~L~i~~v~~~d~G~Y~C~a 743 (813)
|++|+|.|........ .|.|+|.... +. .+. .+ ...+.+|+|.+++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 7899999987654333 6999985321 00 000 01 113457999999999999999998
Q ss_pred E-cCCCceEEEEEEEE
Q psy14896 744 S-NDRSALESSVTISI 758 (813)
Q Consensus 744 ~-N~~G~~~~~~~l~V 758 (813)
. .+.|..+..+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 45788888888887
No 309
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.05 E-value=2e-05 Score=64.30 Aligned_cols=74 Identities=19% Similarity=0.345 Sum_probs=45.0
Q ss_pred CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCC
Q psy14896 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269 (813)
Q Consensus 190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 269 (813)
|.+...| ..+|.+| ++|+|.|.... +.-.+.|||+|...... ........++ ...+.|.. ++.+|+
T Consensus 2 P~l~a~p-~~vV~~G-----~~VTL~C~~~~-~~~~f~l~k~g~~~~~~---~~~~~~~~~~---~a~f~I~~-~~~~~~ 67 (94)
T cd05711 2 PFLSAHP-SPVVPSG-----ENVTLQCHSDI-RFDRFILYKEGRSKPVL---HLYEKHHGGF---QASFPLGP-VTPAHA 67 (94)
T ss_pred CEEEecC-CCccCCC-----CeEEEEEecCC-CCCEEEEEECCCCCCce---ecccccCCeE---EEEEEecC-CCcccC
Confidence 4455544 3445555 77999998865 56689999999642100 0000000111 12456666 599999
Q ss_pred eeEEEEee
Q psy14896 270 GSYHCKAS 277 (813)
Q Consensus 270 G~Y~C~a~ 277 (813)
|.|+|...
T Consensus 68 G~Y~C~~~ 75 (94)
T cd05711 68 GTYRCYGS 75 (94)
T ss_pred EEEEEEEE
Confidence 99999975
No 310
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.04 E-value=1.3e-05 Score=67.55 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=47.1
Q ss_pred cCCCCCCeEEEEEEecCCC-CCeEEEEeCC--ccc---C-------C--Cceeee----cceEEEECCCCCCCCEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGYP-VPSYNWTRRG--SPL---P-------R--NAYFEN----FNRILTIPNVKVEDQGEYICR 742 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P-~p~i~W~k~g--~~l---~-------~--~~~~~~----~~~~L~i~~v~~~d~G~Y~C~ 742 (813)
..+.+|++|+|.|.+.+.+ ...+.|||.. ... . . ..++.. ....|+|.+++.+|+|.|.|.
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca 89 (106)
T cd04980 10 LSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQ 89 (106)
T ss_pred EEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEE
Confidence 5678999999999998765 5689999842 211 0 0 112221 234699999999999999999
Q ss_pred EEcC
Q psy14896 743 ASND 746 (813)
Q Consensus 743 a~N~ 746 (813)
+.+.
T Consensus 90 ~~~~ 93 (106)
T cd04980 90 QYGT 93 (106)
T ss_pred EeCC
Confidence 9764
No 311
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.01 E-value=3.7e-05 Score=64.05 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=49.0
Q ss_pred cccEEEEeeeccCC---CCeEEEeecccccc--cccc-cc----cccCCCccEEee-------CCeEEEcCCccccCCee
Q psy14896 209 LNDITLSCYAGGYP---NPSYEWFKEDYVQD--RLVA-NL----IDPLSDKRFTLS-------GGNLIINDPRQVEDRGS 271 (813)
Q Consensus 209 g~~v~l~C~~~g~P---~p~v~W~k~g~~l~--~~~~-~~----~~~~~~~~~~~~-------~~~l~i~~~~~~~d~G~ 271 (813)
|++|+|.|...... ...|.|||...... -... .. .......|..+. +.+|.|.+. +.+|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-~~~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNV-RASDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcC-ChhhCEE
Confidence 57899999986322 23688988652110 0000 00 001112344432 236888885 9999999
Q ss_pred EEEEeecCceeeEeeeeEEee
Q psy14896 272 YHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 272 Y~C~a~n~~g~~~s~~~~l~v 292 (813)
|+|.+.|..+.. ...+.|.|
T Consensus 80 Y~C~v~~~~~~~-~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFYE-EATVELKV 99 (100)
T ss_pred EEEEEecCCcEE-EEEEEEEE
Confidence 999999877653 55666665
No 312
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.01 E-value=1.6e-05 Score=62.90 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=43.8
Q ss_pred eEEEecCCCCCCcceEEEeeccccccccCCccEEEccCc------cEEEeeeeecCCeeeEEEEeeeccccCC
Q psy14896 313 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGR 379 (813)
Q Consensus 313 ~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~n~~g~~~~ 379 (813)
++|.|.+.+++|.+.|+|+|||+++.-..........++ .|.+..-..+|...|+|+|.+.......
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~~~ 74 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNATP 74 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCCCC
Confidence 478999989999999999999998522111111122233 3455444455667999999987654433
No 313
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.99 E-value=6.6e-05 Score=60.83 Aligned_cols=72 Identities=22% Similarity=0.379 Sum_probs=51.3
Q ss_pred CeEEEEEEecCCC-CCeEEEEeCCc----ccC-----CC--------cee-----eecceEEEECCCCCCCCEEEEEEEE
Q psy14896 688 DKVRLECVAFGYP-VPSYNWTRRGS----PLP-----RN--------AYF-----ENFNRILTIPNVKVEDQGEYICRAS 744 (813)
Q Consensus 688 ~~v~l~C~~~g~P-~p~i~W~k~g~----~l~-----~~--------~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~ 744 (813)
++|+|.|.....+ ...|+|.|... .+. .+ .+. ...+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4789999987433 34899988521 110 00 011 1225689999999999999999975
Q ss_pred -cCCCceEEEEEEEEE
Q psy14896 745 -NDRSALESSVTISIQ 759 (813)
Q Consensus 745 -N~~G~~~~~~~l~V~ 759 (813)
.+.|+.+++..|.|.
T Consensus 81 tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 81 TFPLGNTQSSTTVTVL 96 (96)
T ss_pred eCCCCCeeEEEEEEEC
Confidence 568999999999873
No 314
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.98 E-value=4.5e-05 Score=64.77 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=50.3
Q ss_pred CCCceeecCCCccccccEEEEeeeccCCCCeEEEeeccc--cccccccc------ccccCCCccEEee-----CCeEEEc
Q psy14896 195 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY--VQDRLVAN------LIDPLSDKRFTLS-----GGNLIIN 261 (813)
Q Consensus 195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~--~l~~~~~~------~~~~~~~~~~~~~-----~~~l~i~ 261 (813)
.|..+.+.+| ++|+|.|.+.+ +.+.+.|||... .+.-.... ........++... ..+|.|.
T Consensus 4 ~p~~~~v~~G-----~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~ 77 (110)
T cd05899 4 SPRYLIKGRG-----QSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIK 77 (110)
T ss_pred CCCceEEcCC-----CcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEEC
Confidence 4566777666 77999999988 778999999753 21100000 0001112344432 2357887
Q ss_pred CCccccCCeeEEEEeecCc
Q psy14896 262 DPRQVEDRGSYHCKASNKF 280 (813)
Q Consensus 262 ~~~~~~d~G~Y~C~a~n~~ 280 (813)
+. +.+|+|.|.|.+.+..
T Consensus 78 ~~-~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 78 SA-EPEDSAVYLCASSLGG 95 (110)
T ss_pred CC-ChhhCEEEEEEeeCCC
Confidence 75 8999999999998653
No 315
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.93 E-value=3.2e-05 Score=64.04 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=45.5
Q ss_pred CCCCCCeEEEEEEecCC--CCCeEEEEeCCc--ccC------------CCceee----ecceEEEECCCCCCCCEEEEEE
Q psy14896 683 APKAGDKVRLECVAFGY--PVPSYNWTRRGS--PLP------------RNAYFE----NFNRILTIPNVKVEDQGEYICR 742 (813)
Q Consensus 683 ~~~~G~~v~l~C~~~g~--P~p~i~W~k~g~--~l~------------~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~ 742 (813)
.+.+|++|+|.|.+.+. ....+.|||... .+. ...++. .....|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999999765 456799998432 111 011221 1235699999999999999999
Q ss_pred EEc
Q psy14896 743 ASN 745 (813)
Q Consensus 743 a~N 745 (813)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 875
No 316
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.93 E-value=1.6e-05 Score=68.45 Aligned_cols=64 Identities=27% Similarity=0.488 Sum_probs=47.8
Q ss_pred cCCCCCCeEEEEEEecC--CCCCeEEEEeC--CcccC-----------------CCceee----e--cceEEEECCCCCC
Q psy14896 682 EAPKAGDKVRLECVAFG--YPVPSYNWTRR--GSPLP-----------------RNAYFE----N--FNRILTIPNVKVE 734 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g--~P~p~i~W~k~--g~~l~-----------------~~~~~~----~--~~~~L~i~~v~~~ 734 (813)
+.+.+|++|+|.|.+.+ .+.+.+.|||. |..+. ...++. . ....|+|.+++.+
T Consensus 8 ~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 87 (116)
T cd04982 8 ITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKE 87 (116)
T ss_pred EEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHH
Confidence 56789999999999987 67789999995 22110 011221 1 2457999999999
Q ss_pred CCEEEEEEEEc
Q psy14896 735 DQGEYICRASN 745 (813)
Q Consensus 735 d~G~Y~C~a~N 745 (813)
|+|.|.|.+..
T Consensus 88 Dsg~Y~C~~~~ 98 (116)
T cd04982 88 DSATYYCAYWE 98 (116)
T ss_pred HCEEEEEEEec
Confidence 99999999964
No 317
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.86 E-value=9e-05 Score=61.15 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=49.0
Q ss_pred cccEEEEeeeccCCC-CeEEEeecccccccc-------cccccccCCCccEEe-----eCCeEEEcCCccccCCeeEEEE
Q psy14896 209 LNDITLSCYAGGYPN-PSYEWFKEDYVQDRL-------VANLIDPLSDKRFTL-----SGGNLIINDPRQVEDRGSYHCK 275 (813)
Q Consensus 209 g~~v~l~C~~~g~P~-p~v~W~k~g~~l~~~-------~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~ 275 (813)
|++|+|.|....... -.|.|+|....-... ....+...-..+..+ .+.+|.|.+. +.+|+|.|+|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv-~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNV-TLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCC-ceeeeEEEEEE
Confidence 588999999754333 369999964311000 011111121222222 2456888885 99999999999
Q ss_pred eec-CceeeEeeeeEEee
Q psy14896 276 ASN-KFGSIISESVQLAF 292 (813)
Q Consensus 276 a~n-~~g~~~s~~~~l~v 292 (813)
... ..|.. +..+.|+|
T Consensus 80 ~~~~p~g~~-~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSK-SGTMCLTV 96 (97)
T ss_pred EEeCCCCCe-eeEEEEEE
Confidence 874 44543 56676765
No 318
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.84 E-value=7.6e-05 Score=57.39 Aligned_cols=59 Identities=42% Similarity=0.740 Sum_probs=46.7
Q ss_pred EEEEEEecCCCCCeEEEEeCCcccCCCc--------eeeecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896 690 VRLECVAFGYPVPSYNWTRRGSPLPRNA--------YFENFNRILTIPNVKVEDQGEYICRASNDRS 748 (813)
Q Consensus 690 v~l~C~~~g~P~p~i~W~k~g~~l~~~~--------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 748 (813)
++|.|.+.+.|.+.+.|++++....... ........|.|.++..+|.|.|.|.+.+..+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 67 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence 4799999997788999999887654332 1233456799999999999999999998763
No 319
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.84 E-value=0.00014 Score=59.51 Aligned_cols=80 Identities=21% Similarity=0.355 Sum_probs=49.6
Q ss_pred cEEEEeeecc-CCCC---eEEEeeccc--c--ccccc---ccccccCCCccEEee-----CCeEEEcCCccccCCeeEEE
Q psy14896 211 DITLSCYAGG-YPNP---SYEWFKEDY--V--QDRLV---ANLIDPLSDKRFTLS-----GGNLIINDPRQVEDRGSYHC 274 (813)
Q Consensus 211 ~v~l~C~~~g-~P~p---~v~W~k~g~--~--l~~~~---~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~G~Y~C 274 (813)
+|+|.|.... .|.. +|.|.|... . +.-.. ...+...-..|..+. +.+|.|.+. +.+|+|.|+|
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl-~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRL-ELEDEGVYIC 80 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCC-ccccCEEEEE
Confidence 4899999864 2322 699988521 1 10000 001122223444443 478999996 8999999999
Q ss_pred Eeec-CceeeEeeeeEEee
Q psy14896 275 KASN-KFGSIISESVQLAF 292 (813)
Q Consensus 275 ~a~n-~~g~~~s~~~~l~v 292 (813)
.+.+ ..|.. +..+.|.|
T Consensus 81 ~v~t~P~g~~-~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGNR-ESQLNLTV 98 (99)
T ss_pred EEEeCCCCCe-EEEEEEEE
Confidence 9998 56653 66777776
No 320
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.83 E-value=7.6e-05 Score=63.62 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=46.4
Q ss_pred CCceeecCCCccccccEEEEeeeccCC----CCeEEEeec---ccc---cccccc-c--ccccCCCccEEee------CC
Q psy14896 196 PTDVVFDLSKRSILNDITLSCYAGGYP----NPSYEWFKE---DYV---QDRLVA-N--LIDPLSDKRFTLS------GG 256 (813)
Q Consensus 196 p~~~~v~~g~~~~g~~v~l~C~~~g~P----~p~v~W~k~---g~~---l~~~~~-~--~~~~~~~~~~~~~------~~ 256 (813)
|..+.+.+| ++++|.|.....+ ...|.||+. +.. +-.... . .....-..|..+. +.
T Consensus 5 ~~~v~~~~G-----~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~ 79 (115)
T cd05880 5 SKEVEAVNG-----TDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDA 79 (115)
T ss_pred CceEEEEcC-----CCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCce
Confidence 455666666 6699999985432 246999852 111 100000 0 0001111233221 34
Q ss_pred eEEEcCCccccCCeeEEEEeecCcee
Q psy14896 257 NLIINDPRQVEDRGSYHCKASNKFGS 282 (813)
Q Consensus 257 ~l~i~~~~~~~d~G~Y~C~a~n~~g~ 282 (813)
+|.|.+. +.+|+|.|+|.+.|..+.
T Consensus 80 sL~I~~v-~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 80 SILIWQL-QPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred EEEEeeC-ChhhCEEEEEEEEeCCCC
Confidence 5888885 999999999999986553
No 321
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.79 E-value=0.00012 Score=62.71 Aligned_cols=91 Identities=23% Similarity=0.384 Sum_probs=55.7
Q ss_pred CCceeecCCCccccccEEEEeeec-cCCCCeEEEeeccc-----ccc----cccccccccCCCccEEee-C-----CeEE
Q psy14896 196 PTDVVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDY-----VQD----RLVANLIDPLSDKRFTLS-G-----GNLI 259 (813)
Q Consensus 196 p~~~~v~~g~~~~g~~v~l~C~~~-g~P~p~v~W~k~g~-----~l~----~~~~~~~~~~~~~~~~~~-~-----~~l~ 259 (813)
|..+.+.+| +++.|.|... ......+.|++... .+. .............+..+. + .+|.
T Consensus 8 ~~~v~~~~G-----~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 82 (114)
T PF07686_consen 8 PSPVTVQEG-----ESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLT 82 (114)
T ss_dssp ESEEEEETT-----SEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEE
T ss_pred CCeEEEecC-----CCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEE
Confidence 455666666 6799999998 55667999999654 111 000111222223333322 1 2588
Q ss_pred EcCCccccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896 260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 260 i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
|.+. +.+|+|.|.|.+...........+.|.|
T Consensus 83 i~~l-~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 83 IKNL-QPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp ESSE-SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred ECCC-CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 8885 9999999999999774443345555554
No 322
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.78 E-value=4.6e-05 Score=65.46 Aligned_cols=77 Identities=23% Similarity=0.426 Sum_probs=53.0
Q ss_pred cCCCCCCeEEEEEEec-CCCCCeEEEEeCCc-----ccC---CC-c----------e--ee----ecceEEEECCCCCCC
Q psy14896 682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGS-----PLP---RN-A----------Y--FE----NFNRILTIPNVKVED 735 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~-----~l~---~~-~----------~--~~----~~~~~L~i~~v~~~d 735 (813)
..+.+|+++.|.|... ......+.|++... .+. .. . + +. ....+|.|.+++.+|
T Consensus 11 v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~D 90 (114)
T PF07686_consen 11 VTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSD 90 (114)
T ss_dssp EEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGG
T ss_pred EEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCc
Confidence 5678999999999998 55566999999433 111 00 0 0 01 123479999999999
Q ss_pred CEEEEEEEEcC-CCceEEEEEEEE
Q psy14896 736 QGEYICRASND-RSALESSVTISI 758 (813)
Q Consensus 736 ~G~Y~C~a~N~-~G~~~~~~~l~V 758 (813)
+|.|.|.+... .+.....+.|.|
T Consensus 91 sG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 91 SGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999986 233344555554
No 323
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.78 E-value=6.1e-05 Score=63.52 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=48.7
Q ss_pred eeecCCCeEEEecCCCCCCcceEEEeeccc---ccc------------ccCCccEEEccC-----ccEEEeeeeecCCee
Q psy14896 306 IGNQNWGKAMFCDPPTNYPGVNYYWARDYF---PNF------------VEEDKRVFVSYD-----GALYFSALEQIDAGN 365 (813)
Q Consensus 306 ~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~---~~~------------~~~~~~~~~~~~-----~~L~i~~v~~~D~G~ 365 (813)
.+.+|+.++|.|.+....+...+.|+|... +.. .....|+.+..+ .+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 456899999999974333678999998543 100 112344444332 279999999999999
Q ss_pred eEEEEeeecc
Q psy14896 366 YSCNVQSKVS 375 (813)
Q Consensus 366 Y~C~a~n~~g 375 (813)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987653
No 324
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.75 E-value=5.6e-05 Score=62.65 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=45.9
Q ss_pred CCCCCCeEEEEEEecC-CCCCeEEEEeCCcc-----cC--------CCceee------ecceEEEECCCCCCCCEEEEEE
Q psy14896 683 APKAGDKVRLECVAFG-YPVPSYNWTRRGSP-----LP--------RNAYFE------NFNRILTIPNVKVEDQGEYICR 742 (813)
Q Consensus 683 ~~~~G~~v~l~C~~~g-~P~p~i~W~k~g~~-----l~--------~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~ 742 (813)
.+.+|++|+|.|.... .+...+.|+|.... |. ...++. .....|+|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 4678999999999875 35568999986421 10 011121 1235799999999999999999
Q ss_pred EEcC
Q psy14896 743 ASND 746 (813)
Q Consensus 743 a~N~ 746 (813)
+.+.
T Consensus 83 ~~~~ 86 (98)
T cd05716 83 VGDD 86 (98)
T ss_pred cccC
Confidence 9875
No 325
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.75 E-value=0.00014 Score=60.82 Aligned_cols=83 Identities=19% Similarity=0.332 Sum_probs=51.2
Q ss_pred cccEEEEeeeccCC-------CCeEEEeecc-----cccc----cccccccccCCCccEEee-------CCeEEEcCCcc
Q psy14896 209 LNDITLSCYAGGYP-------NPSYEWFKED-----YVQD----RLVANLIDPLSDKRFTLS-------GGNLIINDPRQ 265 (813)
Q Consensus 209 g~~v~l~C~~~g~P-------~p~v~W~k~g-----~~l~----~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~ 265 (813)
|++|.|.|...-.| .+.|.|+|.. +.+. ......+...-..|..+. +-+|.|.+. +
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv-~ 80 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRL-R 80 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCC-C
Confidence 57799999965323 3689999862 1110 000011233444455553 235778775 8
Q ss_pred ccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896 266 VEDRGSYHCKASNKFGSIISESVQLAFG 293 (813)
Q Consensus 266 ~~d~G~Y~C~a~n~~g~~~s~~~~l~v~ 293 (813)
.+|+|.|.|.+....... ...+.|.|.
T Consensus 81 ~~D~G~Y~C~v~~g~~~~-~~~v~L~V~ 107 (110)
T cd05902 81 YSDSGTYRCEVVLGINDE-QDTVPLEVT 107 (110)
T ss_pred HHHCEEEEEEEEECCccc-EEEEEEEEE
Confidence 999999999999755333 556777764
No 326
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.74 E-value=0.00021 Score=61.21 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=47.0
Q ss_pred CCceeecCCCccccccEEEEeeeccCC----CCeEEEeecccc------cccc-cccc---cccCCCccEEee------C
Q psy14896 196 PTDVVFDLSKRSILNDITLSCYAGGYP----NPSYEWFKEDYV------QDRL-VANL---IDPLSDKRFTLS------G 255 (813)
Q Consensus 196 p~~~~v~~g~~~~g~~v~l~C~~~g~P----~p~v~W~k~g~~------l~~~-~~~~---~~~~~~~~~~~~------~ 255 (813)
|..+.+.+| ++|+|.|...... ...|.||+.... +-.. .... ....-..|+.+. +
T Consensus 5 p~~v~v~~G-----~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 79 (116)
T cd05715 5 PREVYAVNG-----SDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKD 79 (116)
T ss_pred CCeEEEEcC-----CCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCe
Confidence 455666666 7799999985422 256999874321 0000 0000 011111233332 2
Q ss_pred CeEEEcCCccccCCeeEEEEeecCcee
Q psy14896 256 GNLIINDPRQVEDRGSYHCKASNKFGS 282 (813)
Q Consensus 256 ~~l~i~~~~~~~d~G~Y~C~a~n~~g~ 282 (813)
.+|.|.+. +.+|+|.|.|.+.|..+.
T Consensus 80 ~sL~I~~v-~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 80 ASIVIHNL-QFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eEEEEeeC-CcccCEEEEEEEEeCCCC
Confidence 45788775 999999999999986553
No 327
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.74 E-value=0.00024 Score=57.63 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=49.9
Q ss_pred cEEEEeeeccC-CCCeEEEeeccc----ccccc---cccccccCCCccEEee-----CCeEEEcCCccccCCeeEEEEee
Q psy14896 211 DITLSCYAGGY-PNPSYEWFKEDY----VQDRL---VANLIDPLSDKRFTLS-----GGNLIINDPRQVEDRGSYHCKAS 277 (813)
Q Consensus 211 ~v~l~C~~~g~-P~p~v~W~k~g~----~l~~~---~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~d~G~Y~C~a~ 277 (813)
+++|.|..... ...+|+|.|-.. .+..- .+..+...-..|..+. +.+|.|.+. +.+|+|.|+|.+.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv-~~~D~G~Y~C~v~ 80 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENV-GFSDIGVYICKAV 80 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCC-CccccEEEEEEEE
Confidence 48999998642 344899988532 11100 0111222333455543 678999986 8999999999986
Q ss_pred -cCceeeEeeeeEEee
Q psy14896 278 -NKFGSIISESVQLAF 292 (813)
Q Consensus 278 -n~~g~~~s~~~~l~v 292 (813)
...|.. +.++.|+|
T Consensus 81 tfP~G~~-~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNT-QSSTTVTV 95 (96)
T ss_pred eCCCCCe-eEEEEEEE
Confidence 466655 55566665
No 328
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.72 E-value=0.00011 Score=63.22 Aligned_cols=77 Identities=19% Similarity=0.421 Sum_probs=47.9
Q ss_pred CCceeecCCCccccccEEEEeeecc--CCCCeEEEeecc--ccccccccc-------ccccCCCccEEee--C----CeE
Q psy14896 196 PTDVVFDLSKRSILNDITLSCYAGG--YPNPSYEWFKED--YVQDRLVAN-------LIDPLSDKRFTLS--G----GNL 258 (813)
Q Consensus 196 p~~~~v~~g~~~~g~~v~l~C~~~g--~P~p~v~W~k~g--~~l~~~~~~-------~~~~~~~~~~~~~--~----~~l 258 (813)
|..+.+.+| ++|+|.|.+.+ .+.+.+.|||.. ......... ........++... . .+|
T Consensus 5 p~~~~~~~G-----~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 79 (116)
T cd04982 5 QLSITREES-----KSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTL 79 (116)
T ss_pred CCeEEeCCC-----CCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEE
Confidence 455666555 77999999977 678899999963 221110000 0011123455432 1 247
Q ss_pred EEcCCccccCCeeEEEEeec
Q psy14896 259 IINDPRQVEDRGSYHCKASN 278 (813)
Q Consensus 259 ~i~~~~~~~d~G~Y~C~a~n 278 (813)
.|.+. +.+|+|.|.|.+..
T Consensus 80 ~I~~~-~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 80 TIQNL-EKEDSATYYCAYWE 98 (116)
T ss_pred EEEEC-CHHHCEEEEEEEec
Confidence 77775 89999999999874
No 329
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.72 E-value=7e-05 Score=54.12 Aligned_cols=52 Identities=21% Similarity=0.359 Sum_probs=38.8
Q ss_pred CCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746 (813)
Q Consensus 685 ~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 746 (813)
..|.+|+|+|...+. .+.|++|+..+..+ +..+.+.+-. +++|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCCC
Confidence 358999999987633 39999999766542 3355566666 9999999999653
No 330
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.71 E-value=0.00017 Score=59.65 Aligned_cols=72 Identities=21% Similarity=0.331 Sum_probs=43.7
Q ss_pred cccccEEEEeeeccC--CCCeEEEeeccc--ccccccccc--cccCCCccEEee----CCeEEEcCCccccCCeeEEEEe
Q psy14896 207 SILNDITLSCYAGGY--PNPSYEWFKEDY--VQDRLVANL--IDPLSDKRFTLS----GGNLIINDPRQVEDRGSYHCKA 276 (813)
Q Consensus 207 ~~g~~v~l~C~~~g~--P~p~v~W~k~g~--~l~~~~~~~--~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~a 276 (813)
++|++|+|.|.+.+. ....+.|||... ......... .......++... ..+|.|.+. +.+|+|.|.|.+
T Consensus 4 ~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~~Dsg~Y~C~~ 82 (98)
T cd04984 4 SPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGA-QTEDEADYYCQV 82 (98)
T ss_pred CCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCC-ChhhCEEEEEEE
Confidence 356889999999764 556899999753 111100000 000112344432 124677775 899999999998
Q ss_pred ecC
Q psy14896 277 SNK 279 (813)
Q Consensus 277 ~n~ 279 (813)
.+.
T Consensus 83 ~~~ 85 (98)
T cd04984 83 WDS 85 (98)
T ss_pred ccC
Confidence 753
No 331
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.71 E-value=0.00019 Score=64.12 Aligned_cols=85 Identities=14% Similarity=0.222 Sum_probs=54.1
Q ss_pred cccEEEEeeec-cCCCCeEEEeeccccccccccc--ccccCCCccEEe-----eCCeEEEcCCccccCCeeEEEEeec-C
Q psy14896 209 LNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVAN--LIDPLSDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASN-K 279 (813)
Q Consensus 209 g~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~--~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~a~n-~ 279 (813)
|++|.|.|... +...+.|.|+|..+.+..-... .+...-..|..+ .+.+|.|.+. +.+|+|.|+|...- .
T Consensus 30 ge~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknV-t~sDeGcY~C~F~tfp 108 (189)
T PHA02987 30 HVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNV-SLKDNGCYTCIFNTLL 108 (189)
T ss_pred CCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeC-ChhhCeEEEEEEEecC
Confidence 37799999984 6667899999986544311111 111112235543 4567888885 89999999999863 3
Q ss_pred ceeeEeeeeEEeeee
Q psy14896 280 FGSIISESVQLAFGF 294 (813)
Q Consensus 280 ~g~~~s~~~~l~v~~ 294 (813)
.|...+..+-|+|..
T Consensus 109 ~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 109 SKNNEKGVVCLNVTT 123 (189)
T ss_pred CCCCceeEEEEEEEc
Confidence 342335566677643
No 332
>KOG0613|consensus
Probab=97.69 E-value=0.00087 Score=76.98 Aligned_cols=215 Identities=8% Similarity=-0.079 Sum_probs=133.3
Q ss_pred ccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEE
Q psy14896 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLK 660 (813)
Q Consensus 581 ~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~ 660 (813)
..+....|.|.+ ...+.+.+.|+.+...... . .....+..|.+....+.+.|+|...+..|........ ...
T Consensus 242 ~e~s~~~i~~~l-~~~~G~~~~~~~~~l~e~~---~---~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~-~~~ 313 (1205)
T KOG0613|consen 242 LEASDRKIQLTL-RAPRGPYSAHILGYLIEQR---K---HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTE-EAP 313 (1205)
T ss_pred cchhheeeeEEe-ecCCCchHHHHhcchhhhc---c---cCCCccccccccCCccccceeeecccCCcccceeeeE-Eee
Confidence 344455677777 5667777777776532111 0 1122246777777888888888888877765433111 111
Q ss_pred Ec---cCCCccc------cccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCe-EEEEeCCcccCCCc------eeeecce
Q psy14896 661 VF---PHSNFQQ------LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNA------YFENFNR 724 (813)
Q Consensus 661 v~---~~p~~~~------~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~-i~W~k~g~~l~~~~------~~~~~~~ 724 (813)
+. ..|.... ...|..........+..+..+++.|...+.+.|. ++||+++.....+. .......
T Consensus 314 i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~ 393 (1205)
T KOG0613|consen 314 IGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSH 393 (1205)
T ss_pred ccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCc
Confidence 11 1111100 1122233333445678888999999999999986 99999876554432 1122345
Q ss_pred EEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCC-c----ccccCCceeecCC--CeEEEEEEEcccC--CceEEE
Q psy14896 725 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP-N----FTIPLTDKHMDNQ--ADLTWTCEAFGVP--DVTYSW 795 (813)
Q Consensus 725 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P-~----~~~~~~~~~~~~g--~~~~l~C~~~g~p--~~~v~W 795 (813)
.+.|..+...+.+.|.|.|.|..|........+|...+ . +...........+ +.+.+.|.+.++| ...++|
T Consensus 394 ~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt 473 (1205)
T KOG0613|consen 394 TYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTT 473 (1205)
T ss_pred chhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEee
Confidence 79999999999999999999999987766655555432 2 2222233333333 7788999998887 455777
Q ss_pred EECCEecc
Q psy14896 796 FRNGELGH 803 (813)
Q Consensus 796 ~k~g~~l~ 803 (813)
++++-+..
T Consensus 474 ~~~~~~~s 481 (1205)
T KOG0613|consen 474 IKDGLPLS 481 (1205)
T ss_pred ccCCcccc
Confidence 77776553
No 333
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.68 E-value=0.00012 Score=59.36 Aligned_cols=63 Identities=27% Similarity=0.544 Sum_probs=45.3
Q ss_pred CCeEEEEEEec-CCCCCeEEEEeCCcccCCCc---------eeeecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896 687 GDKVRLECVAF-GYPVPSYNWTRRGSPLPRNA---------YFENFNRILTIPNVKVEDQGEYICRASNDRSA 749 (813)
Q Consensus 687 G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~---------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 749 (813)
|+.+.|+|.+. |+|+|.|+|+.++..+.... ......++|.+..-..+|...++|.|.|..-+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 78999999776 89999999999998872111 11122356877665556777999999997544
No 334
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.68 E-value=0.00034 Score=58.54 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=51.6
Q ss_pred cccEEEEeeeccCC-----------CCeEEEeec-----cccccccc-------ccccccCCCccEEee-------CCeE
Q psy14896 209 LNDITLSCYAGGYP-----------NPSYEWFKE-----DYVQDRLV-------ANLIDPLSDKRFTLS-------GGNL 258 (813)
Q Consensus 209 g~~v~l~C~~~g~P-----------~p~v~W~k~-----g~~l~~~~-------~~~~~~~~~~~~~~~-------~~~l 258 (813)
|++++|.|...-.| .+.|+|+|- |....+.. ...+......|..+. +-+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 46799999997433 238999985 11110000 001122333444442 3468
Q ss_pred EEcCCccccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896 259 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 293 (813)
Q Consensus 259 ~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~ 293 (813)
.|.+. +.+|+|.|+|.+.+..... ...+.|.|.
T Consensus 82 ~i~~v-~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~ 114 (117)
T cd05901 82 TIVKL-RASDAGVYRCEVMHGIEDT-QDTVSLDVS 114 (117)
T ss_pred EEccc-ccccCEEEEEEEEECCccc-EEEEEEEEE
Confidence 88885 8999999999999876655 566777764
No 335
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.68 E-value=0.00027 Score=58.56 Aligned_cols=80 Identities=20% Similarity=0.320 Sum_probs=48.6
Q ss_pred cEEEEeeeccCC---CCeEEEeecccc-----ccccc---ccccccCCCccEEee------CCeEEEcCCccccCCeeEE
Q psy14896 211 DITLSCYAGGYP---NPSYEWFKEDYV-----QDRLV---ANLIDPLSDKRFTLS------GGNLIINDPRQVEDRGSYH 273 (813)
Q Consensus 211 ~v~l~C~~~g~P---~p~v~W~k~g~~-----l~~~~---~~~~~~~~~~~~~~~------~~~l~i~~~~~~~d~G~Y~ 273 (813)
+|+|.|.....+ ...|.|+|.... +.-.. +.........|..+. +.+|.|.+. +.+|+|.|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv-~~sD~GtY~ 80 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNA-VQADEGKYK 80 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecC-ccccceEEE
Confidence 489999986433 348999995321 11000 011111112343432 557888886 899999999
Q ss_pred EEeec-CceeeEeeeeEEee
Q psy14896 274 CKASN-KFGSIISESVQLAF 292 (813)
Q Consensus 274 C~a~n-~~g~~~s~~~~l~v 292 (813)
|.+.+ ..|.. +..+.|.|
T Consensus 81 C~v~~~p~g~~-~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNF-EAELVLTV 99 (100)
T ss_pred EEEEeCCCCCe-eeEEEEEe
Confidence 99997 55654 56666665
No 336
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.64 E-value=0.00023 Score=55.30 Aligned_cols=57 Identities=21% Similarity=0.480 Sum_probs=41.0
Q ss_pred EEEEEEecCC-CC-CeEEEEeCCcccCCCcee----------eecceEEEECCCCCCCCEEEEEEEEcC
Q psy14896 690 VRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF----------ENFNRILTIPNVKVEDQGEYICRASND 746 (813)
Q Consensus 690 v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~----------~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 746 (813)
++|.|.+.|+ |+ ..|+|+|||+++..+... ....+.|.|.....++...|+|+|.+.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 6899999986 54 589999999975443211 111345777666777788999999875
No 337
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.64 E-value=0.0082 Score=61.40 Aligned_cols=197 Identities=16% Similarity=0.186 Sum_probs=114.1
Q ss_pred eEEEeCCCCCCCCceEEEEEEcCc--eeEEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCc--cEEEEcc
Q psy14896 530 NLIINDPRQVEDRGSYHCKASNKF--GSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWAR 605 (813)
Q Consensus 530 ~l~i~~~~~~~d~G~Y~C~a~n~~--g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~v~W~k 605 (813)
.|.|.++ ...++|.|.=+..+.. .......+.+.+..+|.+. ..+.-+.+|++..-.|.+..-+|+ ..++|++
T Consensus 290 pL~I~sl-taATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVs--V~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 290 SLHILSL-DASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNIT--VIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ceEEeec-ccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcc--ccCCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 5899997 9999999987765432 1222344566666666544 445557889999999999666665 5699999
Q ss_pred CCCCCcccC-CCeEEEeeCccEEEEe-ecc-cC-Ce-----eEEEEEEeeecCcccc--CceeeEEEccCCCccccccCC
Q psy14896 606 DYFPNFVEE-DKRVFVSYDGALYFSA-LEQ-ID-AG-----NYSCNVQSKVSDTGRN--GPFFPLKVFPHSNFQQLKFPN 674 (813)
Q Consensus 606 ~~~~~~~~~-~~~~~~~~~~~L~i~~-~~~-~d-~G-----~Y~C~a~n~~g~~~~~--~~~~~l~v~~~p~~~~~~~p~ 674 (813)
||.++.... ........+|.++..+ ++. ++ .+ +.+|.+.=-.+....+ .....-.|..+|.+.
T Consensus 367 ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtIS------ 440 (566)
T PHA03269 367 NFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVS------ 440 (566)
T ss_pred CCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEE------
Confidence 987754211 1223445566543222 222 22 34 4599986443332222 222334455554332
Q ss_pred CCCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeCCcccCCCceee-----ecceEEEECC---CCCCCC-EEEEEEE
Q psy14896 675 NFPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLPRNAYFE-----NFNRILTIPN---VKVEDQ-GEYICRA 743 (813)
Q Consensus 675 ~~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~~~~~~~-----~~~~~L~i~~---v~~~d~-G~Y~C~a 743 (813)
+....|. -.|.+.-.|. ..+.|+-++.......... ...+...|.+ +..+|. -+|+|++
T Consensus 441 -------m~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL 510 (566)
T PHA03269 441 -------IEIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHL 510 (566)
T ss_pred -------EEEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEE
Confidence 2233343 3477777775 4899998877644333221 1123455655 344442 4999998
Q ss_pred Ec
Q psy14896 744 SN 745 (813)
Q Consensus 744 ~N 745 (813)
.-
T Consensus 511 ~G 512 (566)
T PHA03269 511 DG 512 (566)
T ss_pred ee
Confidence 63
No 338
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.62 E-value=0.00042 Score=58.10 Aligned_cols=64 Identities=19% Similarity=0.439 Sum_probs=43.3
Q ss_pred CCCCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCce-e--eec------ceEEEECCCCCCCCE-EEEEEEEcCC
Q psy14896 683 APKAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAY-F--ENF------NRILTIPNVKVEDQG-EYICRASNDR 747 (813)
Q Consensus 683 ~~~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~-~--~~~------~~~L~i~~v~~~d~G-~Y~C~a~N~~ 747 (813)
.+..|+.++|.|.+.|+ |. ..|+|+|||+.+..... . ..+ .+.|.+.. ...|.| .|+|.+.+..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 45578899999999975 53 58999999998864311 1 111 23466654 444545 5999999864
No 339
>KOG1480|consensus
Probab=97.61 E-value=2.4e-05 Score=83.57 Aligned_cols=174 Identities=19% Similarity=0.321 Sum_probs=104.5
Q ss_pred ccccCeEEEEEeeccCCC----cEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCc---eE--EEEEE
Q psy14896 480 SILNDITLSCYAGGYPNP----SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG---SY--HCKAS 550 (813)
Q Consensus 480 ~~g~~~~l~C~~~g~p~~----~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G---~Y--~C~a~ 550 (813)
..+.++.|.|.+...+.. .=.|..+.+.... .............-.+.|... ..++.| .| .|.|.
T Consensus 37 i~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~-----~~~d~tsg~~~~~~si~Isr~-~v~~~~~~~d~~cQc~a~ 110 (909)
T KOG1480|consen 37 IKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKL-----EGTDETSGLGVREVSIDISRQ-QVETSGGPEDYWCQCVAW 110 (909)
T ss_pred ecCCCccceecCCcccccccccChhhhcCccceee-----eccCcccceeEEeeeeeeehh-hhhcccCccceeeeeeee
Confidence 346788889988654433 2346665533110 000111111111223333331 223322 34 56677
Q ss_pred cCceeEEeecEEEEEeeccc-ccccCCCceeccCCCceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCccEEEE
Q psy14896 551 NKFGSIISESVQLAFGFIGE-FNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS 629 (813)
Q Consensus 551 n~~g~~~s~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~ 629 (813)
...|...+....+.+.+.-. |...+.-..+..+....|.|..+.+.|...++|+|++.. +..+.......++.|.|.
T Consensus 111 ~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~--~~pd~n~~~~~d~~li~~ 188 (909)
T KOG1480|consen 111 SDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVV--IDPDANVIRASDHNLIIS 188 (909)
T ss_pred cCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCC--CCccccchhhhcCCcccc
Confidence 77775544444444333332 222233345666777899999989999999999999875 333666777788899999
Q ss_pred eecccCCeeEEEEEEeeecCccccCceeeEEE
Q psy14896 630 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV 661 (813)
Q Consensus 630 ~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v 661 (813)
.+...|.|+|+|+|.|.++........+.+.|
T Consensus 189 ~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv 220 (909)
T KOG1480|consen 189 QARLSDSGNYTCEATNIVAKRKSDPATVQVYV 220 (909)
T ss_pred chhhhhcccceeeeehhhccccccceEEEEEE
Confidence 99999999999999999876554443344443
No 340
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.59 E-value=0.0006 Score=55.35 Aligned_cols=70 Identities=21% Similarity=0.362 Sum_probs=47.3
Q ss_pred CeEEEEEEecCC-CCCeEEEEeCCc----ccC-----CC--------ceee-----ecceEEEECCCCCCCCEEEEEEEE
Q psy14896 688 DKVRLECVAFGY-PVPSYNWTRRGS----PLP-----RN--------AYFE-----NFNRILTIPNVKVEDQGEYICRAS 744 (813)
Q Consensus 688 ~~v~l~C~~~g~-P~p~i~W~k~g~----~l~-----~~--------~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~ 744 (813)
+.++|.|..... ....|+|.|... .+. .+ ++.. ..+.+|+|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 468999998632 345899998532 110 00 1111 124689999999999999999998
Q ss_pred cC-CCceEEEEEEE
Q psy14896 745 ND-RSALESSVTIS 757 (813)
Q Consensus 745 N~-~G~~~~~~~l~ 757 (813)
+- .|..++.+.|.
T Consensus 81 t~P~g~~~~~i~~~ 94 (96)
T cd05889 81 TYPQGSWEKVIEVV 94 (96)
T ss_pred eCCCCCeEEEEEEE
Confidence 75 67777766653
No 341
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.59 E-value=0.00015 Score=58.80 Aligned_cols=70 Identities=21% Similarity=0.448 Sum_probs=42.6
Q ss_pred ccEEEEeee-ccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281 (813)
Q Consensus 210 ~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g 281 (813)
+.+.|+|.+ .|+|.|.|+|+.++..+............+..+.. ..+|.+... ..++...++|.|.+...
T Consensus 15 ~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~S~l~~~~~-~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 15 EEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTV-SSTLTLTPT-REDHGKTLTCRASHPAL 85 (89)
T ss_dssp EEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEE-EEEEEEETT-GGGTTEEEEEEEEETTC
T ss_pred eEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceE-EEEEEEEcC-hHHCCeEEEEEEECCcc
Confidence 679999988 57999999999999876211111111122222221 224555443 45677789999998654
No 342
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.59 E-value=0.00021 Score=55.57 Aligned_cols=67 Identities=21% Similarity=0.372 Sum_probs=39.2
Q ss_pred EEEEeeeccC-CC-CeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896 212 ITLSCYAGGY-PN-PSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (813)
Q Consensus 212 v~l~C~~~g~-P~-p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (813)
++|.|.+.|. |. ..|+|+|||+++..... ....+..+..+.. ...|.+... ..++...|+|+|.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~-~s~L~v~~~-~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFL-SSYLTVSAS-TWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEE-EEEEEEccc-cCCCCCEEEEEEEEcC
Confidence 7899999884 65 69999999986432211 1111112222222 223444332 4567789999998653
No 343
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.55 E-value=0.00025 Score=60.94 Aligned_cols=64 Identities=20% Similarity=0.380 Sum_probs=46.3
Q ss_pred cCCCCCCeEEEEEEecCC-CCCeEEEEeC--Cccc------------CCCceee------ecceEEEECCCCCCCCEEEE
Q psy14896 682 EAPKAGDKVRLECVAFGY-PVPSYNWTRR--GSPL------------PRNAYFE------NFNRILTIPNVKVEDQGEYI 740 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~-P~p~i~W~k~--g~~l------------~~~~~~~------~~~~~L~i~~v~~~d~G~Y~ 740 (813)
+.+.+|++|+|.|..... ....+.|||. +..+ ....++. .....|+|.+++.+|+|.|.
T Consensus 9 v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~ 88 (116)
T cd07706 9 VSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYF 88 (116)
T ss_pred eEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEE
Confidence 567899999999998753 4568999984 2211 0012222 12357999999999999999
Q ss_pred EEEEc
Q psy14896 741 CRASN 745 (813)
Q Consensus 741 C~a~N 745 (813)
|.+.+
T Consensus 89 C~~~~ 93 (116)
T cd07706 89 CALST 93 (116)
T ss_pred EEEEC
Confidence 99985
No 344
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.54 E-value=0.00015 Score=61.07 Aligned_cols=63 Identities=27% Similarity=0.430 Sum_probs=43.6
Q ss_pred CCCCCCeEEEEEEecCCC-CCeEEEEeCCcc---c--------CC-----------Cceee------ecceEEEECCCCC
Q psy14896 683 APKAGDKVRLECVAFGYP-VPSYNWTRRGSP---L--------PR-----------NAYFE------NFNRILTIPNVKV 733 (813)
Q Consensus 683 ~~~~G~~v~l~C~~~g~P-~p~i~W~k~g~~---l--------~~-----------~~~~~------~~~~~L~i~~v~~ 733 (813)
.+.+|++|+|.|.+.+.. ...+.|||-... . .. ..++. .....|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 367899999999987643 458999984321 0 00 11221 1123599999999
Q ss_pred CCCEEEEEEEEc
Q psy14896 734 EDQGEYICRASN 745 (813)
Q Consensus 734 ~d~G~Y~C~a~N 745 (813)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999864
No 345
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.53 E-value=0.02 Score=58.69 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=97.5
Q ss_pred EEEcCCccccCCeeEEEEeecC-cee-eEeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCc--ceEEEeec
Q psy14896 258 LIINDPRQVEDRGSYHCKASNK-FGS-IISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWARD 333 (813)
Q Consensus 258 l~i~~~~~~~d~G~Y~C~a~n~-~g~-~~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~--~~v~W~k~ 333 (813)
|.|.+. +..++|.|+=++.+. .+. ..+..++|.+...| .+...+.-+-+|++..-.|.+..-+|+ ..++|++|
T Consensus 291 L~I~sl-taATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~P--sVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 291 LHILSL-DASTEGTYIWRVIHTANKNVINEHHITVMSYKRP--NITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred eEEeec-ccccCceEEEEEecCCCCceeeeeEEEEEEecCC--CccccCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 677775 899999998776532 222 22455666665556 445555667789999999998777777 68899999
Q ss_pred cccccccC-CccEEEccCccEEE-eeeee-cC-Cee-----eEEEEeeeccccCCC--CCceeeEEccCCcccccccCCC
Q psy14896 334 YFPNFVEE-DKRVFVSYDGALYF-SALEQ-ID-AGN-----YSCNVQSKVSDTGRN--GPFFPLKVFPHSNFQQLKFPNN 402 (813)
Q Consensus 334 ~~~~~~~~-~~~~~~~~~~~L~i-~~v~~-~D-~G~-----Y~C~a~n~~g~~~~~--s~~~~l~v~~~~~~~~~~~~~~ 402 (813)
|.++.... ........+|.++. +-++. ++ ++. .+|.+.-..+..... +....-.|+.+|.+
T Consensus 368 g~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtI-------- 439 (566)
T PHA03269 368 FGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNV-------- 439 (566)
T ss_pred CcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeE--------
Confidence 98864211 22233455664442 23323 22 344 599988654432222 22333344433321
Q ss_pred CCCCCCcCCCCCCcEEEEEEEeecCC--CeeeEeecCCcCC
Q psy14896 403 FPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLP 441 (813)
Q Consensus 403 ~~~~~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~~~~~l~ 441 (813)
+..+..|.- .|.+.-.|. ..+.|+-++.+..
T Consensus 440 -----Sm~FedG~A---VCtA~CVP~~~V~l~WlVgD~p~~ 472 (566)
T PHA03269 440 -----SIEIIDGHI---VCLAKCVPRGVVHFNWWINDIPIE 472 (566)
T ss_pred -----EEEEeCCEE---EEecccccCCCceEEEEecCCCCC
Confidence 233444443 366665554 3789998887743
No 346
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.49 E-value=0.00029 Score=57.13 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=42.8
Q ss_pred CCceEEeCCCCCCCccEEEEccCCC----CCc---------cc--CCCeEEEe----eCccEEEEeecccCCeeEEEEEE
Q psy14896 584 WGKAMFCDPPTNYPGVNYYWARDYF----PNF---------VE--EDKRVFVS----YDGALYFSALEQIDAGNYSCNVQ 644 (813)
Q Consensus 584 ~~~~l~C~~~~~~p~~~v~W~k~~~----~~~---------~~--~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~ 644 (813)
++++|.|..........|+|.|... .+. +. -.+|+... .+.+|+|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 4688999985444567899998532 010 11 11344433 35679999999999999999997
Q ss_pred ee
Q psy14896 645 SK 646 (813)
Q Consensus 645 n~ 646 (813)
.-
T Consensus 81 t~ 82 (96)
T cd05889 81 TY 82 (96)
T ss_pred eC
Confidence 64
No 347
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.49 E-value=0.00039 Score=58.08 Aligned_cols=63 Identities=22% Similarity=0.460 Sum_probs=44.0
Q ss_pred CCCCCCeEEEEEEecCCCCCeEEEEeCC----ccc------CC------------Cceee----ecceEEEECCCCCCCC
Q psy14896 683 APKAGDKVRLECVAFGYPVPSYNWTRRG----SPL------PR------------NAYFE----NFNRILTIPNVKVEDQ 736 (813)
Q Consensus 683 ~~~~G~~v~l~C~~~g~P~p~i~W~k~g----~~l------~~------------~~~~~----~~~~~L~i~~v~~~d~ 736 (813)
.+.+|++|+|+|.+...-...+.|||.. ..+ .. ..++. .....|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 3678999999999875544579999843 211 00 01121 1234699999999999
Q ss_pred EEEEEEEEc
Q psy14896 737 GEYICRASN 745 (813)
Q Consensus 737 G~Y~C~a~N 745 (813)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998864
No 348
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.48 E-value=0.0047 Score=63.00 Aligned_cols=195 Identities=17% Similarity=0.216 Sum_probs=110.4
Q ss_pred eEEEeCCCCCCCCceEEEEEEcCceeEE-eecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCc--cEEEEccC
Q psy14896 530 NLIINDPRQVEDRGSYHCKASNKFGSII-SESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWARD 606 (813)
Q Consensus 530 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~~-s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~v~W~k~ 606 (813)
.|.|..+ ....+|.|+=...+..|... ...+.+....+|.+.+ .+.-+.+|++..-.|.+..-+|+ ..++|++|
T Consensus 199 ~LtI~sl-taaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv--~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 199 PLTIKSV-DWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDL--SVHPSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred ceEEEec-chhhceEEEEEEecCCCceeeeeEEEEEEecCCcccc--cCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 4899997 99999999877655444322 2234444456665444 45557889999999999666665 56999999
Q ss_pred CCCCcccC--CCeEEEeeCcc------EEEEeecc-cCCeeEEEEEEeeecCcccc--CceeeEEEccCCCccccccCCC
Q psy14896 607 YFPNFVEE--DKRVFVSYDGA------LYFSALEQ-IDAGNYSCNVQSKVSDTGRN--GPFFPLKVFPHSNFQQLKFPNN 675 (813)
Q Consensus 607 ~~~~~~~~--~~~~~~~~~~~------L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~--~~~~~l~v~~~p~~~~~~~p~~ 675 (813)
|.++.... ........+|- |++..... +..=+.+|.+.=-.+....+ .....-.|..+|.+.
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is------- 348 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVS------- 348 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEE-------
Confidence 98755211 12233333443 33332211 22347899986433332221 122334455555332
Q ss_pred CCCCCCcCCCCCCeEEEEEEecCCCC--CeEEEEeCCcccC--CCce-e----eecceEEEECC---CCCCCCE--EEEE
Q psy14896 676 FPKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRGSPLP--RNAY-F----ENFNRILTIPN---VKVEDQG--EYIC 741 (813)
Q Consensus 676 ~~~~~~~~~~~G~~v~l~C~~~g~P~--p~i~W~k~g~~l~--~~~~-~----~~~~~~L~i~~---v~~~d~G--~Y~C 741 (813)
+....|+ -.|.+.-.|. ..+.|+-++ .++ .... . ...-+...|.+ +..+| | +|+|
T Consensus 349 ------~~F~~G~---AVCtA~CVP~egV~l~W~v~D-~~p~a~~~~~~tG~C~~~PglvNlrS~~pls~~d-gp~eYTC 417 (486)
T PHA03273 349 ------VTVEDGD---AVCTAKCVPSTGVFVSWSVND-HLPGVPSQDMTTGVCSSHPGLVNMQSRRPLSEEN-GEREYSC 417 (486)
T ss_pred ------EEEeCCE---EEEecccccCCCeeEEEEccC-CCCCCcccccccccCCCCCCceeeeccccccccC-CceeEEE
Confidence 2233333 3577777776 689998766 321 1111 1 11123455655 44444 6 9999
Q ss_pred EEEc
Q psy14896 742 RASN 745 (813)
Q Consensus 742 ~a~N 745 (813)
++.-
T Consensus 418 rl~G 421 (486)
T PHA03273 418 IIEG 421 (486)
T ss_pred EEee
Confidence 9963
No 349
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.46 E-value=0.00092 Score=57.36 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=48.3
Q ss_pred CCCceeecCCCccccccEEEEeeeccC-CCCeEEEeecc--cccccccc--cccccCCCccEEee------CCeEEEcCC
Q psy14896 195 QPTDVVFDLSKRSILNDITLSCYAGGY-PNPSYEWFKED--YVQDRLVA--NLIDPLSDKRFTLS------GGNLIINDP 263 (813)
Q Consensus 195 ~p~~~~v~~g~~~~g~~v~l~C~~~g~-P~p~v~W~k~g--~~l~~~~~--~~~~~~~~~~~~~~------~~~l~i~~~ 263 (813)
.|..+.+.+| ++|+|+|..... ....+.|||.. ..+.-... .........|+.+. +-+|.|.+.
T Consensus 5 ~~~~v~~~~G-----~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~ 79 (116)
T cd07706 5 AQPDVSVQVG-----EEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISAL 79 (116)
T ss_pred eCCceEEcCC-----CCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCC
Confidence 3556666666 779999998653 45689999953 22111000 00111223555543 124777775
Q ss_pred ccccCCeeEEEEeec
Q psy14896 264 RQVEDRGSYHCKASN 278 (813)
Q Consensus 264 ~~~~d~G~Y~C~a~n 278 (813)
+.+|+|.|.|.+..
T Consensus 80 -~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 80 -QLEDSAKYFCALST 93 (116)
T ss_pred -CHHHCEEEEEEEEC
Confidence 89999999999985
No 350
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.46 E-value=0.00098 Score=51.66 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=40.8
Q ss_pred cccEEEEeeecc--CCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecC
Q psy14896 209 LNDITLSCYAGG--YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK 279 (813)
Q Consensus 209 g~~v~l~C~~~g--~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~ 279 (813)
|++++|+|+... .|.+.|+|+-.+.... ........+|.+.+. ...|+|.++|.++-.
T Consensus 14 G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~------------~~~~~~~ktL~~~qv-~~qdSG~WtC~V~~~ 73 (88)
T cd07694 14 GTNLTLTLHGSSNSLPAFKVEWRGPGNKSK------------QILNQDKKTLNLVQL-GPNDSGTWDCIVSVN 73 (88)
T ss_pred CCcEEEEEecCCCCCCCccEEEeCCCCccc------------eeccCCccEEEecee-CcccCCEEEEEEEEC
Confidence 488999999954 4555999998875321 001123456777775 899999999999743
No 351
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.43 E-value=0.01 Score=59.98 Aligned_cols=197 Identities=17% Similarity=0.221 Sum_probs=112.8
Q ss_pred CCeEEEeCCCCCCCCceEEEEEEcCcee-EEeecEEEEEeecccccccCCCceeccCCCceEEeCCCCCCCc--cEEEEc
Q psy14896 528 GGNLIINDPRQVEDRGSYHCKASNKFGS-IISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWA 604 (813)
Q Consensus 528 ~~~l~i~~~~~~~d~G~Y~C~a~n~~g~-~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~v~W~ 604 (813)
...|.|..+ +...+|.|+=...+..+. ...+.+.+....+|.+.+ .+.-+.+|++..-+|.+..-+|+ ..++||
T Consensus 181 ~~~L~I~sl-t~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv--~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf 257 (466)
T PHA03270 181 TQRLVIQEL-TLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSI--RPHAVLEGEPFGATCVAANYYPGDRAAFRWF 257 (466)
T ss_pred cceEEEEEc-ccccceEEEEEEecCCCceeeeeEEEEEEecCCcccc--cCCccccCCCceEEEEeeeecCCCceEEEEE
Confidence 347999997 899999999887665443 223345555566666544 44557789999999999666665 569999
Q ss_pred cCCCCCcccC--CCeEEEeeCccEEEEeecccCCe------eEEEEEEeeecCccc--cCceeeEEEccCCCccccccCC
Q psy14896 605 RDYFPNFVEE--DKRVFVSYDGALYFSALEQIDAG------NYSCNVQSKVSDTGR--NGPFFPLKVFPHSNFQQLKFPN 674 (813)
Q Consensus 605 k~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G------~Y~C~a~n~~g~~~~--~~~~~~l~v~~~p~~~~~~~p~ 674 (813)
+||.++.... +.......+|-..+.-++..+.+ +.+|.+.=-.+.... ......-.|..+|.+.
T Consensus 258 ~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Is------ 331 (466)
T PHA03270 258 EGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIE------ 331 (466)
T ss_pred eCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEE------
Confidence 9998753222 22333344553344444444433 789998643332211 1222333444444332
Q ss_pred CCCCCCCcCCCCCCeEEEEEEecCCCC-CeEEEEeCCcccCCCce-ee-----ecceEEEEC---CCCCCCCEEEEEEEE
Q psy14896 675 NFPKTFPEAPKAGDKVRLECVAFGYPV-PSYNWTRRGSPLPRNAY-FE-----NFNRILTIP---NVKVEDQGEYICRAS 744 (813)
Q Consensus 675 ~~~~~~~~~~~~G~~v~l~C~~~g~P~-p~i~W~k~g~~l~~~~~-~~-----~~~~~L~i~---~v~~~d~G~Y~C~a~ 744 (813)
+.+..|. -.|.+.-.|. ..+.|+-++......+. +. ...+...|. .++.+ ..+|+|.+.
T Consensus 332 -------v~F~dG~---AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~plSd~-~~eYTCrl~ 400 (466)
T PHA03270 332 -------MEFGGDE---AVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALPLSRE-HSEYTCRLV 400 (466)
T ss_pred -------EEEeCCE---EEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeecccccccC-CceEEEEEe
Confidence 2233343 3466665553 48999987766543321 11 011223332 23333 369999985
No 352
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.43 E-value=0.00038 Score=50.67 Aligned_cols=59 Identities=22% Similarity=0.469 Sum_probs=43.6
Q ss_pred CCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 687 G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
.+.|.|+|.+. -.|+|+| |..+.... +.+|.+.....+-.|.|.|.++| .+....|.|.
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~-----~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy 64 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVS-----NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY 64 (69)
T ss_pred CceEEEEecCC----CcEEEec-Cccccccc-----ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence 46899999762 4699999 66654332 56899999999999999999987 2344445443
No 353
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.37 E-value=0.00044 Score=52.95 Aligned_cols=66 Identities=32% Similarity=0.545 Sum_probs=43.0
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (813)
+.|.|.+.+.|.+.+.|++++......... ..............|.|.+. +.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT--RVRSSRGTSSGSSTLTISNV-TLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE--EeccccCcceeEEEEEECcc-CcccCcEEEEEEecCc
Confidence 469999988788899999998654221100 00011111222445777765 7899999999998765
No 354
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.34 E-value=0.0014 Score=53.16 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=45.4
Q ss_pred CCeEEEEEEec-CCCCCeEEEEeCCcccCCCcee------eecceEEEECCCCCCCCEEEEEEEEcCCCc--eEEEEEEE
Q psy14896 687 GDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKVEDQGEYICRASNDRSA--LESSVTIS 757 (813)
Q Consensus 687 G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~--~~~~~~l~ 757 (813)
.....+.|.+. |.|.+.|+|+++.......... ..-.+.|.+.....+|.-.|+|+|.|..-. ...++.|.
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~ 94 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLN 94 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEee
Confidence 44678999995 8999999999972111111111 111346777666666667999999998643 34445544
No 355
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.34 E-value=0.02 Score=57.97 Aligned_cols=168 Identities=18% Similarity=0.221 Sum_probs=102.4
Q ss_pred CeEEEcCCccccCCeeEEEEeecCceee-EeeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCc--ceEEEee
Q psy14896 256 GNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWAR 332 (813)
Q Consensus 256 ~~l~i~~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~--~~v~W~k 332 (813)
..|.|... +...+|.|+=..-+..+.. .++.++|.....|.+ ...+..+-+|++..-.|.+..-+|+ ..++|++
T Consensus 182 ~~L~I~sl-t~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psv--sv~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQEL-TLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSL--SIRPHAVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEc-ccccceEEEEEEecCCCceeeeeEEEEEEecCCcc--cccCCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 35777775 8999999999977655533 244566555555554 4445566789999999998777777 6899999
Q ss_pred ccccccccC--CccEEEccCccEEEeeeeecCCe------eeEEEEeeeccccC--CCCCceeeEEccCCcccccccCCC
Q psy14896 333 DYFPNFVEE--DKRVFVSYDGALYFSALEQIDAG------NYSCNVQSKVSDTG--RNGPFFPLKVFPHSNFQQLKFPNN 402 (813)
Q Consensus 333 ~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~D~G------~Y~C~a~n~~g~~~--~~s~~~~l~v~~~~~~~~~~~~~~ 402 (813)
||.++.... +.......+|--.++-++.++.+ ..+|.+.-...... +.+....-.|+.+|.+
T Consensus 259 ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~I-------- 330 (466)
T PHA03270 259 GGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTI-------- 330 (466)
T ss_pred CCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeE--------
Confidence 999853222 23333444553455555655543 78999876544321 1222333334433321
Q ss_pred CCCCCCcCCCCCCcEEEEEEEeecCC-CeeeEeecCCcCCC
Q psy14896 403 FPKTFPEAPKAGDKVRLECVAFGYPV-PSYNWTRRGSPLPR 442 (813)
Q Consensus 403 ~~~~~~~~v~~g~~~~l~C~~~g~p~-p~i~W~~~~~~l~~ 442 (813)
...+..|.-+ |.+.-.|. ..+.|.-++.+.+.
T Consensus 331 -----sv~F~dG~AV---CtA~CVPegV~l~W~V~D~~~pa 363 (466)
T PHA03270 331 -----EMEFGGDEAV---CTAACVPEGVTLAWLLGADPAPA 363 (466)
T ss_pred -----EEEEeCCEEE---EeccccCCCCEEEEEecCCCCCC
Confidence 2234444433 55554443 38999988877654
No 356
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.34 E-value=0.0011 Score=55.69 Aligned_cols=71 Identities=27% Similarity=0.474 Sum_probs=41.5
Q ss_pred cccccEEEEeeeccC-CCCeEEEeecccc-----ccccc-----c-cccc-cCCCccEEe--e-CC---eEEEcCCcccc
Q psy14896 207 SILNDITLSCYAGGY-PNPSYEWFKEDYV-----QDRLV-----A-NLID-PLSDKRFTL--S-GG---NLIINDPRQVE 267 (813)
Q Consensus 207 ~~g~~v~l~C~~~g~-P~p~v~W~k~g~~-----l~~~~-----~-~~~~-~~~~~~~~~--~-~~---~l~i~~~~~~~ 267 (813)
++|++|+|.|.+.+. ....+.|||.... +.-.. . .... .....++.. . ++ +|.|.+. +.+
T Consensus 4 ~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~-~~~ 82 (107)
T cd07700 4 QTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV-KPE 82 (107)
T ss_pred cCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC-CHH
Confidence 346889999998653 3458999997532 10000 0 0000 001234432 1 12 4777775 999
Q ss_pred CCeeEEEEeec
Q psy14896 268 DRGSYHCKASN 278 (813)
Q Consensus 268 d~G~Y~C~a~n 278 (813)
|+|.|.|...+
T Consensus 83 Dsg~YyCa~~~ 93 (107)
T cd07700 83 DSGTYFCMTVG 93 (107)
T ss_pred HCEEEEEeEcC
Confidence 99999999864
No 357
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.31 E-value=0.00055 Score=56.70 Aligned_cols=68 Identities=22% Similarity=0.317 Sum_probs=47.5
Q ss_pred eeecCCCeEEEecCCCCCCcceEEEeecccc---cc--------ccCCccEEEccC-----ccEEEeeeeecCCeeeEEE
Q psy14896 306 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFP---NF--------VEEDKRVFVSYD-----GALYFSALEQIDAGNYSCN 369 (813)
Q Consensus 306 ~~~~~~~~~l~C~~~~~~p~~~v~W~k~~~~---~~--------~~~~~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~ 369 (813)
.+.+|+.++|.|......+...+.|+|.... .. .....|+.+..+ .+|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 5678999999998654456678999976421 11 112344444321 2699999999999999999
Q ss_pred Eeee
Q psy14896 370 VQSK 373 (813)
Q Consensus 370 a~n~ 373 (813)
+...
T Consensus 83 ~~~~ 86 (98)
T cd05716 83 VGDD 86 (98)
T ss_pred cccC
Confidence 8754
No 358
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.30 E-value=0.00044 Score=57.09 Aligned_cols=69 Identities=19% Similarity=0.393 Sum_probs=40.2
Q ss_pred ccEEEEeeecc-CC-CCeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896 210 NDITLSCYAGG-YP-NPSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (813)
Q Consensus 210 ~~v~l~C~~~g-~P-~p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (813)
+.++|.|.|.| +| ...|+|+|||+++..... .......+..|+. ...|.+... .-++...|+|++.+..
T Consensus 18 ~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~-~s~L~v~~~-~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 18 GKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSL-SSYLTLTKS-DWNKHKVYTCEVTHEG 89 (100)
T ss_pred CCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEE-EEEEEEcHH-HhCCCCeEEEEEEecC
Confidence 55999999987 56 569999999998743211 0111111222222 112333321 2345678999998754
No 359
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.29 E-value=0.0006 Score=55.61 Aligned_cols=65 Identities=22% Similarity=0.322 Sum_probs=42.6
Q ss_pred CCCceEEeCCCCCCCc-cEEEEccCCCCC-cccCCCeEEEeeCccEE---EEeecccCCeeEEEEEEeee
Q psy14896 583 NWGKAMFCDPPTNYPG-VNYYWARDYFPN-FVEEDKRVFVSYDGALY---FSALEQIDAGNYSCNVQSKV 647 (813)
Q Consensus 583 g~~~~l~C~~~~~~p~-~~v~W~k~~~~~-~~~~~~~~~~~~~~~L~---i~~~~~~d~G~Y~C~a~n~~ 647 (813)
++.++|.|.+..-+|. ..++|+|+|... ............+|++. ...+...+.+.|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 6779999999444565 489999998521 11111233344556533 33455678999999998875
No 360
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.29 E-value=0.0093 Score=59.70 Aligned_cols=197 Identities=18% Similarity=0.211 Sum_probs=106.3
Q ss_pred eEEEeCCCCCCCCceEEEEEEcCceeEEe-ecEEEEEeecc-cccccCCCceeccCCCceEEeCCCCCCCc--cEEEEcc
Q psy14896 530 NLIINDPRQVEDRGSYHCKASNKFGSIIS-ESVQLAFGFIG-EFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWAR 605 (813)
Q Consensus 530 ~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s-~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~v~W~k 605 (813)
.|.|.++ ...++|.|+....+....... +.+.+.+.+.| .+.+. +.-+..|++..-+|.+..-+|+ ..++|++
T Consensus 208 ~v~I~sv-D~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~--a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~ 284 (490)
T PHA03271 208 GVEIRNV-DYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVL--APPVLSGENYKASCIVRHFYPPGSVYVSWRQ 284 (490)
T ss_pred eEEEEEe-ecccceEEEEEecCCCCCccccceEEEEEEecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 6889997 899999887766654443322 23444444443 34443 4456789999999999666665 5699999
Q ss_pred CCCCCcccCCCeEEE----eeCcc-----EEEEeecccCCeeEEEEEEeeecCc-cccCceeeEEEccCCCccccccCCC
Q psy14896 606 DYFPNFVEEDKRVFV----SYDGA-----LYFSALEQIDAGNYSCNVQSKVSDT-GRNGPFFPLKVFPHSNFQQLKFPNN 675 (813)
Q Consensus 606 ~~~~~~~~~~~~~~~----~~~~~-----L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~~~l~v~~~p~~~~~~~p~~ 675 (813)
||.+........... ..++. |.+.+...+..=+.+|.+.=-.+.. .+......-.|..+|.+.
T Consensus 285 nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~IS------- 357 (490)
T PHA03271 285 NGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRIS------- 357 (490)
T ss_pred CCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEE-------
Confidence 998754333222221 11221 2332222222338999986433321 111222333344444332
Q ss_pred CCCCCCcCCCCCCeEEEEEEecCCCC-CeEEEEeCCcccCCCce---ee----ecceEEEECC-CCCCCC---EEEEEEE
Q psy14896 676 FPKTFPEAPKAGDKVRLECVAFGYPV-PSYNWTRRGSPLPRNAY---FE----NFNRILTIPN-VKVEDQ---GEYICRA 743 (813)
Q Consensus 676 ~~~~~~~~~~~G~~v~l~C~~~g~P~-p~i~W~k~g~~l~~~~~---~~----~~~~~L~i~~-v~~~d~---G~Y~C~a 743 (813)
+....|+. .|.+.-.|. ..+.|+-++.++..... .. ...+...|.+ ...+|. -+|+|++
T Consensus 358 ------v~FedG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL 428 (490)
T PHA03271 358 ------LAFKDGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRL 428 (490)
T ss_pred ------EEEeCCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEE
Confidence 23334443 366655553 48999987766433211 11 1123445544 333433 4999998
Q ss_pred Ec
Q psy14896 744 SN 745 (813)
Q Consensus 744 ~N 745 (813)
.-
T Consensus 429 ~G 430 (490)
T PHA03271 429 IG 430 (490)
T ss_pred ee
Confidence 63
No 361
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.26 E-value=0.0011 Score=53.93 Aligned_cols=62 Identities=11% Similarity=0.194 Sum_probs=42.4
Q ss_pred CceEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeeecC
Q psy14896 585 GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVSD 649 (813)
Q Consensus 585 ~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~g~ 649 (813)
...+.|.+..|+|.+.|+|+++... ..........+|+ |.+.....+|.-.|+|+|.|..-.
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~~~~---~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 17 VTVATCVSANGKPPATISWETTLGG---EAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeCCCC---cceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 4579999989999999999997211 1112222334443 566656667778999999998743
No 362
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.23 E-value=0.0021 Score=52.08 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=38.3
Q ss_pred ccEEEEeeec-cCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896 210 NDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281 (813)
Q Consensus 210 ~~v~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g 281 (813)
..+.++|.+. |+|.+.|+|+++...... .......+..++. ...|.+... ..+|...|+|+|.|..-
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~---~~~~~~~~gt~tv-~S~l~~~P~-~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNAN---TTSKENGDGTVTV-TSEYSLVPT-PEANGKEVTCKVEHETL 83 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCee---EEEEeCCCCCEEE-EEEEEEecC-HHHCCCEEEEEEeCccc
Confidence 4589999885 899999999998321110 0111111222221 123444332 45566689999998653
No 363
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.23 E-value=0.001 Score=55.54 Aligned_cols=71 Identities=25% Similarity=0.342 Sum_probs=43.0
Q ss_pred cccccEEEEeeeccCCCCeEEEeecccc----ccccccc----cc----ccCCCccEEee----CCeEEEcCCccccCCe
Q psy14896 207 SILNDITLSCYAGGYPNPSYEWFKEDYV----QDRLVAN----LI----DPLSDKRFTLS----GGNLIINDPRQVEDRG 270 (813)
Q Consensus 207 ~~g~~v~l~C~~~g~P~p~v~W~k~g~~----l~~~~~~----~~----~~~~~~~~~~~----~~~l~i~~~~~~~d~G 270 (813)
++|++|+|+|.+...-...+.|||.... +.-.... .. ......++... ..+|.|.+. +.+|+|
T Consensus 4 ~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~sDsg 82 (104)
T cd05720 4 ELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNF-QKENEG 82 (104)
T ss_pred cCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCC-CHHHCE
Confidence 4568899999986544567999997632 1100000 00 00112344432 224778775 899999
Q ss_pred eEEEEeec
Q psy14896 271 SYHCKASN 278 (813)
Q Consensus 271 ~Y~C~a~n 278 (813)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998764
No 364
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.22 E-value=0.0014 Score=53.09 Aligned_cols=63 Identities=13% Similarity=0.201 Sum_probs=41.7
Q ss_pred CeEEEEEEec-CCCCCeEEEEeCCcccCCCceee------ecceEEEECCCCCCCCEEEEEEEEcCCCce
Q psy14896 688 DKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFE------NFNRILTIPNVKVEDQGEYICRASNDRSAL 750 (813)
Q Consensus 688 ~~v~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 750 (813)
..+.+.|.+. |.|.+.|+|+++........... .-.+.|.+..-..+|.-.|+|+|.|..-..
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~ 85 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQE 85 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 4678999887 89999999999832221111111 113467776666667779999999986433
No 365
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.22 E-value=0.0011 Score=54.09 Aligned_cols=58 Identities=28% Similarity=0.543 Sum_probs=39.1
Q ss_pred CCeEEEEEEecCC-CCC-eEEEEeCCcccCCCc----eeeec------ceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896 687 GDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNA----YFENF------NRILTIPNVKVEDQGEYICRASNDR 747 (813)
Q Consensus 687 G~~v~l~C~~~g~-P~p-~i~W~k~g~~l~~~~----~~~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~ 747 (813)
|+.++|.|.+.|+ |++ .++|+|+|+.+..+. ..... .+.|.|.. .|.+.|+|++.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCC
Confidence 7889999999996 543 899999996433221 11111 22455543 47899999998864
No 366
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.20 E-value=0.00066 Score=56.94 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=43.8
Q ss_pred eeccCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCc-c------EEEEeecccCCe-eEEEEEEeeec
Q psy14896 579 IGNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDG-A------LYFSALEQIDAG-NYSCNVQSKVS 648 (813)
Q Consensus 579 ~~~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~-~------L~i~~~~~~d~G-~Y~C~a~n~~g 648 (813)
....|+.++|.|.+...+|. ..|+|+|||.++.. .........++ + |.+. +...|.| .|+|.+.+...
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~-~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA-EQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc-cccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCC
Confidence 34567789999999777885 79999999987432 11222223343 4 3333 3344545 49999999753
No 367
>PHA02672 ORF110 EEV glycoprotein; Provisional
Probab=97.20 E-value=0.00031 Score=58.58 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=60.8
Q ss_pred CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEc
Q psy14896 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNE 106 (813)
Q Consensus 27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~ 106 (813)
.-|..||.+|++.||.-..- ..+-..|...|+++.|+|--|-+..-+.-++.+. ....+|.+-++.- ...|.=.
T Consensus 48 ~AC~~GWvp~dd~CyLnT~~-q~s~~~A~~iC~~~~a~lP~~pn~~hLKgVm~lt----~~r~FW~thh~~y-~~vy~~~ 121 (166)
T PHA02672 48 EACENGWVPIKDLCVLNTHV-ITNVTLAHDICASMDGDPPATPNTMLLKGIMFLT----GERSFWMTHHDAY-TSVYEPK 121 (166)
T ss_pred hhhhcCCeeccCEEEEecce-eecccHHHHHHHhccCCCCCCCCHhHhhheeeEe----cccEEEEEccccc-eeeeecC
Confidence 44999999999999987777 4899999999999999999988855444343432 4457888877653 3456666
Q ss_pred CCCCCCc
Q psy14896 107 DGTNLNE 113 (813)
Q Consensus 107 dgs~~~~ 113 (813)
+|+.+.+
T Consensus 122 ~~~~~~~ 128 (166)
T PHA02672 122 RGSYLPS 128 (166)
T ss_pred CCCcccc
Confidence 7776653
No 368
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.20 E-value=0.0012 Score=53.88 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=42.1
Q ss_pred cCCCCCCeEEEEEEecCC--CC-CeEEEEeCCcccCCC---ceeee------cceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896 682 EAPKAGDKVRLECVAFGY--PV-PSYNWTRRGSPLPRN---AYFEN------FNRILTIPNVKVEDQGEYICRASNDR 747 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~--P~-p~i~W~k~g~~l~~~---~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~ 747 (813)
..+..|+.++|.|.+.|+ |+ ..|+|+|||+..... ..... -.+.|.+..-...+.-.|+|.+....
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 345678999999999998 54 379999997432111 00111 12346665544444558999998763
No 369
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.19 E-value=0.037 Score=55.66 Aligned_cols=161 Identities=11% Similarity=0.224 Sum_probs=94.3
Q ss_pred cEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCC--
Q psy14896 625 ALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-- 702 (813)
Q Consensus 625 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p-- 702 (813)
.|.|.++...|+|.|+....+.... ......+.+.+.+.|....+.. ..+..|+...=.|.+..+=+|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~-~i~e~~~~~~v~~RPPsVsV~a---------~PVL~Ge~YkAtC~vAnYYPP~S 277 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNR-PLLDKHIYIRVCQRPASVDVLA---------PPVLSGENYKASCIVRHFYPPGS 277 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCC-ccccceEEEEEEecCCCccccC---------CccccCCCceEEEEeeeecCCCc
Confidence 4899999999999886665543332 2334456666666654333322 346789999999999854333
Q ss_pred -eEEEEeCCcccCCCceee------------ecceEEEECCCCCCCCEEEEEEEEcCCCceE----EEEEEEEEcCCccc
Q psy14896 703 -SYNWTRRGSPLPRNAYFE------------NFNRILTIPNVKVEDQGEYICRASNDRSALE----SSVTISIQAEPNFT 765 (813)
Q Consensus 703 -~i~W~k~g~~l~~~~~~~------------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~----~~~~l~V~~~P~~~ 765 (813)
.++|++||.++......+ ...++|++.+...+..=..+|.+.=.-+... +++.-.|..+|.+.
T Consensus 278 vrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~IS 357 (490)
T PHA03271 278 VYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRIS 357 (490)
T ss_pred eEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEE
Confidence 799999998875432111 1123455544433333489999973323222 22233344445443
Q ss_pred ccCCceeecCCCeEEEEEEEcccC-CceEEEEECCEecc
Q psy14896 766 IPLTDKHMDNQADLTWTCEAFGVP-DVTYSWFRNGELGH 803 (813)
Q Consensus 766 ~~~~~~~~~~g~~~~l~C~~~g~p-~~~v~W~k~g~~l~ 803 (813)
+.+..|.. .|.+.-.| ...+.|+-++.++.
T Consensus 358 -----v~FedG~A---VCtA~CVP~gV~lrWlVgD~p~p 388 (490)
T PHA03271 358 -----LAFKDGYA---ICTIECVPSGITVRWLVHDEPQP 388 (490)
T ss_pred -----EEEeCCEE---EEeccccCCCcEEEEEecCCCCC
Confidence 33444543 25544333 56899998776653
No 370
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.17 E-value=0.0012 Score=53.47 Aligned_cols=64 Identities=19% Similarity=0.381 Sum_probs=43.8
Q ss_pred CCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCcee-----e-----ecceEEEECCCCCCCCEEEEEEEEcCCCc
Q psy14896 686 AGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAYF-----E-----NFNRILTIPNVKVEDQGEYICRASNDRSA 749 (813)
Q Consensus 686 ~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~~-----~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 749 (813)
.++.++|.|.|.|+ |. ..|+|+|||..+..+... . ...+.|.|..-...+...|+|++.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 45679999999984 54 489999999987433211 1 11345777655556778999999886443
No 371
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.15 E-value=0.024 Score=58.05 Aligned_cols=161 Identities=17% Similarity=0.175 Sum_probs=93.8
Q ss_pred EEEcCCccccCCeeEEEEeecCceeeE-eeeeEEeeeeecccccCCCCceeecCCCeEEEecCCCCCCc--ceEEEeecc
Q psy14896 258 LIINDPRQVEDRGSYHCKASNKFGSII-SESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG--VNYYWARDY 334 (813)
Q Consensus 258 l~i~~~~~~~d~G~Y~C~a~n~~g~~~-s~~~~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p~--~~v~W~k~~ 334 (813)
|.|... +..++|.|+=+..+..|... +..++|....+|. +...+..+-+|++..-.|.+..-+|+ ..++|++||
T Consensus 200 LtI~sl-taaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Ps--vsv~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 200 LTIKSV-DWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPL--VDLSVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred eEEEec-chhhceEEEEEEecCCCceeeeeEEEEEEecCCc--ccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 777775 89999999977666555431 2334444344454 44555667789999999998777777 689999999
Q ss_pred ccccccC--CccEEEccCccE-EEeeeeecCC------eeeEEEEeeeccccCCC--CCceeeEEccCCcccccccCCCC
Q psy14896 335 FPNFVEE--DKRVFVSYDGAL-YFSALEQIDA------GNYSCNVQSKVSDTGRN--GPFFPLKVFPHSNFQQLKFPNNF 403 (813)
Q Consensus 335 ~~~~~~~--~~~~~~~~~~~L-~i~~v~~~D~------G~Y~C~a~n~~g~~~~~--s~~~~l~v~~~~~~~~~~~~~~~ 403 (813)
.++.... ........+|-+ .++-++.++. =..+|.+.-........ +....-.|+.+|.+
T Consensus 277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~I--------- 347 (486)
T PHA03273 277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTV--------- 347 (486)
T ss_pred eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeE---------
Confidence 9865211 222333334422 2222323322 37899988654432221 22233334433321
Q ss_pred CCCCCcCCCCCCcEEEEEEEeecCC--CeeeEeecC
Q psy14896 404 PKTFPEAPKAGDKVRLECVAFGYPV--PSYNWTRRG 437 (813)
Q Consensus 404 ~~~~~~~v~~g~~~~l~C~~~g~p~--p~i~W~~~~ 437 (813)
...+..|.- .|.+.-.|. ..+.|+-++
T Consensus 348 ----s~~F~~G~A---VCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 348 ----SVTVEDGDA---VCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred ----EEEEeCCEE---EEecccccCCCeeEEEEccC
Confidence 223444443 376666665 589998877
No 372
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.13 E-value=0.00036 Score=57.56 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=43.9
Q ss_pred eccCCCceEEeCCCCCCC-ccEEEEccCCCCCcccC-CCeEEEeeCccEE------EEeecccCCeeEEEEEEeeec
Q psy14896 580 GNQNWGKAMFCDPPTNYP-GVNYYWARDYFPNFVEE-DKRVFVSYDGALY------FSALEQIDAGNYSCNVQSKVS 648 (813)
Q Consensus 580 ~~~g~~~~l~C~~~~~~p-~~~v~W~k~~~~~~~~~-~~~~~~~~~~~L~------i~~~~~~d~G~Y~C~a~n~~g 648 (813)
...+..++|.|.+...+| ...|+|+|||.++.... ........+|++. +..-..++...|+|.+.+...
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 335677899999966677 57899999997642111 1112223466643 333333457899999998753
No 373
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.07 E-value=0.0016 Score=52.87 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=45.3
Q ss_pred ccCCCceEEeCCCCCCCcc-EEEEccCCCCCccc-CCCeEEEeeCccEEE---EeecccCCeeEEEEEEeeec
Q psy14896 581 NQNWGKAMFCDPPTNYPGV-NYYWARDYFPNFVE-EDKRVFVSYDGALYF---SALEQIDAGNYSCNVQSKVS 648 (813)
Q Consensus 581 ~~g~~~~l~C~~~~~~p~~-~v~W~k~~~~~~~~-~~~~~~~~~~~~L~i---~~~~~~d~G~Y~C~a~n~~g 648 (813)
..++.++|.|.+.+-+|.. .++|+|||.++... .........+|++.+ -.+...+...|+|.+.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 3578899999996667764 89999999764321 112233345566433 23455677799999998764
No 374
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.07 E-value=0.0011 Score=54.90 Aligned_cols=63 Identities=19% Similarity=0.448 Sum_probs=42.1
Q ss_pred CCCCCeEEEEEEecCCCCC--eEEEEeCCcccCCCce------eee-------cceEEEECCCCCCCCEEEEEEEEcC
Q psy14896 684 PKAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAY------FEN-------FNRILTIPNVKVEDQGEYICRASND 746 (813)
Q Consensus 684 ~~~G~~v~l~C~~~g~P~p--~i~W~k~g~~l~~~~~------~~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~ 746 (813)
+..|+.++|.|.|.|+-++ .++|+|||+++..... ... -.+.|.|..-...+...|+|++...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 3457889999999996543 6899999998754321 011 1234666444445666899999875
No 375
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.04 E-value=0.0019 Score=55.51 Aligned_cols=65 Identities=22% Similarity=0.228 Sum_probs=44.3
Q ss_pred cCCCCCCeEEEEEEecCCC------CCeEEEEeCCc-----ccC---C-C--------cee------eecceEEEECCCC
Q psy14896 682 EAPKAGDKVRLECVAFGYP------VPSYNWTRRGS-----PLP---R-N--------AYF------ENFNRILTIPNVK 732 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P------~p~i~W~k~g~-----~l~---~-~--------~~~------~~~~~~L~i~~v~ 732 (813)
+.+.+|++|+|.|.....+ ...+.|||... .+. . . .++ ...+..|+|.+++
T Consensus 9 v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~ 88 (119)
T cd05712 9 VSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQ 88 (119)
T ss_pred EEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCC
Confidence 5678999999999875321 24699998532 100 0 0 111 1123579999999
Q ss_pred CCCCEEEEEEEEcC
Q psy14896 733 VEDQGEYICRASND 746 (813)
Q Consensus 733 ~~d~G~Y~C~a~N~ 746 (813)
.+|+|.|.|.+...
T Consensus 89 ~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 89 PEDSGKYFFRVELG 102 (119)
T ss_pred hhhCeEEEEEEEcC
Confidence 99999999988653
No 376
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.03 E-value=0.0014 Score=52.93 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=45.0
Q ss_pred ccCCCceEEeCCCCCCCc-cEEEEccCCCCCcccCCCeEEEeeCccEEEE---eecccCCeeEEEEEEeee
Q psy14896 581 NQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGALYFS---ALEQIDAGNYSCNVQSKV 647 (813)
Q Consensus 581 ~~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~---~~~~~d~G~Y~C~a~n~~ 647 (813)
..|...+|.|.+..-+|. ..|+|+|||.++.-..........|++..+. .+...+...|+|.+.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 346667899999554664 6899999998743111122334556775433 456778889999999854
No 377
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.02 E-value=0.0038 Score=50.73 Aligned_cols=60 Identities=17% Similarity=0.354 Sum_probs=40.8
Q ss_pred CCCCeEEEEEEecCC-CCC-eEEEEeCCcccCCCc----eeeec------ceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896 685 KAGDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNA----YFENF------NRILTIPNVKVEDQGEYICRASNDR 747 (813)
Q Consensus 685 ~~G~~v~l~C~~~g~-P~p-~i~W~k~g~~l~~~~----~~~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~ 747 (813)
..|+.++|.|.+.|+ |.. .++|+|||+++..+. ..... .+.|.+. ..+...|+|++....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCC
Confidence 468899999999984 543 899999999876541 11111 2234443 345669999998764
No 378
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.01 E-value=0.004 Score=53.57 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=46.4
Q ss_pred CCceeecCCCccccccEEEEeeeccCC------CCeEEEeecccc-----cccccc--cccccCCCccEEee------CC
Q psy14896 196 PTDVVFDLSKRSILNDITLSCYAGGYP------NPSYEWFKEDYV-----QDRLVA--NLIDPLSDKRFTLS------GG 256 (813)
Q Consensus 196 p~~~~v~~g~~~~g~~v~l~C~~~g~P------~p~v~W~k~g~~-----l~~~~~--~~~~~~~~~~~~~~------~~ 256 (813)
|..+.+.+| +.|+|.|.....+ ...+.|||.... +..... .........|+... +.
T Consensus 6 P~~v~~~~G-----~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~ 80 (119)
T cd05712 6 PKSVSVQEG-----LCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNC 80 (119)
T ss_pred CCEEEEecc-----ccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEE
Confidence 455666666 7799999865311 246999997531 100000 01111222355441 23
Q ss_pred eEEEcCCccccCCeeEEEEeecC
Q psy14896 257 NLIINDPRQVEDRGSYHCKASNK 279 (813)
Q Consensus 257 ~l~i~~~~~~~d~G~Y~C~a~n~ 279 (813)
+|.|.+. +.+|+|.|.|.+...
T Consensus 81 sL~I~~l-~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 81 SLLISDA-QPEDSGKYFFRVELG 102 (119)
T ss_pred EEEEccC-ChhhCeEEEEEEEcC
Confidence 5888885 999999999998653
No 379
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.92 E-value=0.0018 Score=47.01 Aligned_cols=50 Identities=28% Similarity=0.505 Sum_probs=33.4
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecC
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK 279 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~ 279 (813)
|.+|+|+|...+. .+.|++|+..+. + .+..+++.+- . ++.|.|.|.+.+.
T Consensus 7 GTtVtlTCP~~~~---~i~W~~n~~~~~-----------g-----~~~~~~~~~~-~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 7 GTTVTVTCPLSGD---DIKWKKNDQVSQ-----------G-----SDEKYLSLNH-F-SSSGYYHCTADNA 56 (65)
T ss_pred ccEEEEECCCCCC---CceEEeCCccCC-----------C-----CCceEEeecc-C-CCCceEEEEeCCC
Confidence 4669999987542 399999996431 1 1223334343 4 8999999999754
No 380
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.92 E-value=0.0025 Score=51.91 Aligned_cols=25 Identities=16% Similarity=0.478 Sum_probs=20.4
Q ss_pred ccEEEEeeeccC--CC-CeEEEeecccc
Q psy14896 210 NDITLSCYAGGY--PN-PSYEWFKEDYV 234 (813)
Q Consensus 210 ~~v~l~C~~~g~--P~-p~v~W~k~g~~ 234 (813)
+.++|.|.+.|. |. ..|+|.|||++
T Consensus 15 ~~~tLtC~v~gf~yP~~i~v~W~r~~~~ 42 (96)
T cd07696 15 KSVKLTCLVTNLTSPEGVNVTWTRGSGE 42 (96)
T ss_pred CCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence 669999999987 53 48999999753
No 381
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.90 E-value=0.0056 Score=49.58 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=40.5
Q ss_pred ccEEEEeeecc-CCC-CeEEEeeccccccccc-ccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCc
Q psy14896 210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLV-ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280 (813)
Q Consensus 210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 280 (813)
+.++|.|.|.| .|. ..++|.|||+++.... ...+.+..+..|... ..|.+. .++...|+|.+....
T Consensus 16 ~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~-s~L~v~----~~~~~~ytC~V~H~~ 84 (94)
T cd05767 16 EPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKF-SYLNFT----PEEGDIYSCIVEHWG 84 (94)
T ss_pred CCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEE-EEEEEE----CCCCCeEEEEEEeCC
Confidence 55899999998 464 5899999998764321 111222333333332 223332 346679999998753
No 382
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.89 E-value=0.0035 Score=53.62 Aligned_cols=64 Identities=25% Similarity=0.466 Sum_probs=44.2
Q ss_pred cCCCCCCeEEEEEEecCCC--CCeEEEEeC--Cc-c--c---CC-----------Cceeee------cceEEEECCCCCC
Q psy14896 682 EAPKAGDKVRLECVAFGYP--VPSYNWTRR--GS-P--L---PR-----------NAYFEN------FNRILTIPNVKVE 734 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P--~p~i~W~k~--g~-~--l---~~-----------~~~~~~------~~~~L~i~~v~~~ 734 (813)
..+.+|++|+|.|...+.- ...+.|||- |+ + | .. ..++.. ....|+|.+++.+
T Consensus 7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 86 (117)
T cd04981 7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE 86 (117)
T ss_pred eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence 5678999999999886533 357999983 22 2 1 00 112211 1236999999999
Q ss_pred CCEEEEEEEEc
Q psy14896 735 DQGEYICRASN 745 (813)
Q Consensus 735 d~G~Y~C~a~N 745 (813)
|+|.|.|.+..
T Consensus 87 Dsa~YyCa~~~ 97 (117)
T cd04981 87 DTAVYYCARGL 97 (117)
T ss_pred HCEEEEEEEEc
Confidence 99999998864
No 383
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.89 E-value=0.0012 Score=53.63 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=41.6
Q ss_pred cCCCceEEeCCCCCCCc-cEEEEccCCCCCccc-CCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeeec
Q psy14896 582 QNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVE-EDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVS 648 (813)
Q Consensus 582 ~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~-~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~g 648 (813)
....++|.|.+..-+|. ..|+|+|||.+.... .........+++ |.|..-...+...|+|.+.+...
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 34568999999655775 789999999763111 111122334455 33333333466799999998764
No 384
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.85 E-value=0.0032 Score=45.94 Aligned_cols=59 Identities=22% Similarity=0.376 Sum_probs=38.4
Q ss_pred ccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeE
Q psy14896 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ 289 (813)
Q Consensus 210 ~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~ 289 (813)
++|.|+|.+. .+|.|+| |.++.. ..+.+|-+-+. ..+-.|.|.|.+++. +.+..
T Consensus 7 ~~V~L~C~~~----tsi~W~k-G~~~~~---------------~~~~tlnLGs~-~~DPRG~Y~C~~s~~-----~~~~~ 60 (69)
T cd07691 7 GKVFLKCNGA----TNITWKK-GKEILE---------------VSNTLLDLGSR-INDPRGTYSCKESEP-----NKEKT 60 (69)
T ss_pred ceEEEEecCC----CcEEEec-Cccccc---------------ccccEEeccCc-ccCCCcceEecCccC-----CCcEE
Confidence 4599999762 4699999 654421 11334544443 567799999999872 34566
Q ss_pred Eeeee
Q psy14896 290 LAFGF 294 (813)
Q Consensus 290 l~v~~ 294 (813)
|+|.+
T Consensus 61 LQVyY 65 (69)
T cd07691 61 LQVYY 65 (69)
T ss_pred EEEEE
Confidence 66655
No 385
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.85 E-value=0.0024 Score=51.54 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=44.0
Q ss_pred CCCeEEEecCCCCCCc-ceEEEeeccccccccCCccEEEccCccEEEee---eeecCCeeeEEEEeeec
Q psy14896 310 NWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGALYFSA---LEQIDAGNYSCNVQSKV 374 (813)
Q Consensus 310 ~~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~---v~~~D~G~Y~C~a~n~~ 374 (813)
|...+|.|.+.+-+|. ..++|+|||+++.-.....+....+++..+.. +.+.+...|+|.+....
T Consensus 15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 4556899998776776 79999999998641112233344566655433 45677789999998743
No 386
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.78 E-value=0.0051 Score=48.88 Aligned_cols=61 Identities=25% Similarity=0.538 Sum_probs=42.9
Q ss_pred CCCCeEEEEEEecCC-CCC-eEEEEeCCcccCCCceee----ec------ceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896 685 KAGDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNAYFE----NF------NRILTIPNVKVEDQGEYICRASNDRS 748 (813)
Q Consensus 685 ~~G~~v~l~C~~~g~-P~p-~i~W~k~g~~l~~~~~~~----~~------~~~L~i~~v~~~d~G~Y~C~a~N~~G 748 (813)
..++.++|.|.+.|+ |.. .|+|+++|..+....... .. .+.|.+. ..+...|+|++.+...
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 348999999999985 543 799999999876543211 11 2346665 5666699999988643
No 387
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.74 E-value=0.0036 Score=49.50 Aligned_cols=55 Identities=33% Similarity=0.585 Sum_probs=37.1
Q ss_pred eEEEEEEecCCCCC--eEEEEeCCc--c---cC-------------CCceee------ecceEEEECCCCCCCCEEEEEE
Q psy14896 689 KVRLECVAFGYPVP--SYNWTRRGS--P---LP-------------RNAYFE------NFNRILTIPNVKVEDQGEYICR 742 (813)
Q Consensus 689 ~v~l~C~~~g~P~p--~i~W~k~g~--~---l~-------------~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~ 742 (813)
+|+|.|.+.....+ .+.|++... . +. ...++. ....+|+|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899999865543 899998542 1 00 011111 2235699999999999999996
Q ss_pred E
Q psy14896 743 A 743 (813)
Q Consensus 743 a 743 (813)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 388
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.72 E-value=0.0035 Score=49.85 Aligned_cols=68 Identities=22% Similarity=0.478 Sum_probs=40.2
Q ss_pred cccEEEEeeecc-CCCC-eEEEeeccccccccccccccc-CCCccEEeeCCeEEEcCCccccCCeeEEEEeecCce
Q psy14896 209 LNDITLSCYAGG-YPNP-SYEWFKEDYVQDRLVANLIDP-LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 281 (813)
Q Consensus 209 g~~v~l~C~~~g-~P~p-~v~W~k~g~~l~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g 281 (813)
++.++|.|.+.| .|.. .|.|++||+.+.......... ..+..|... ..|.+. ..+...|+|++.+...
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~-s~l~v~----~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVT-SSLTVT----WNSGDEYSCRVTHESL 78 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEE-EEEEEE----TTTTGGEEEEEEETTS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeee-EEEEec----CCCCCEEEEEEEECCC
Confidence 367999999987 5654 899999998764322111111 122222221 122222 4566689999987644
No 389
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.68 E-value=0.0031 Score=51.04 Aligned_cols=66 Identities=17% Similarity=0.242 Sum_probs=41.7
Q ss_pred cCCCceEEeCCCCCCCc-cEEEEccCCCCCccc-CCCeEEEeeCccEEE---EeecccCCeeEEEEEEeee
Q psy14896 582 QNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVE-EDKRVFVSYDGALYF---SALEQIDAGNYSCNVQSKV 647 (813)
Q Consensus 582 ~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~-~~~~~~~~~~~~L~i---~~~~~~d~G~Y~C~a~n~~ 647 (813)
.++..+|.|.+..-+|. ..++|.|||.++... .........||+..+ ..+.+++...|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence 35567999999655664 789999999763211 111223345665322 1334567779999998864
No 390
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.66 E-value=0.0075 Score=48.66 Aligned_cols=68 Identities=10% Similarity=0.258 Sum_probs=45.2
Q ss_pred ceeecCCCeEE-EecCCCCCCcceEEEeeccccccccCCccEEEccCcc------EEEeeeeecCCeeeEEEEeeecc
Q psy14896 305 EIGNQNWGKAM-FCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVS 375 (813)
Q Consensus 305 ~~~~~~~~~~l-~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~v~~~D~G~Y~C~a~n~~g 375 (813)
..+.+|+...+ .|.+..|.|.++|+|+.+.... .........+|+ |.+..-..+|.-.++|++.+...
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~---~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGT---SESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCc---cceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 34556677777 8999999999999999874432 112223334443 44444445566699999998754
No 391
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.66 E-value=0.0052 Score=51.77 Aligned_cols=67 Identities=16% Similarity=0.341 Sum_probs=45.5
Q ss_pred CCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCce-----ee------ecceEEEECCCCCCC-CEEEEEEEEcCCCce
Q psy14896 685 KAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAY-----FE------NFNRILTIPNVKVED-QGEYICRASNDRSAL 750 (813)
Q Consensus 685 ~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~-----~~------~~~~~L~i~~v~~~d-~G~Y~C~a~N~~G~~ 750 (813)
..++.++|.|.+.|+ |. ..|+|+|||+.+..+.. .. ...+.|.|......| .-.|+|.+.......
T Consensus 16 ~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 16 RNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred ccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence 456789999999985 54 38999999988764421 11 113457776655544 569999998874443
Q ss_pred E
Q psy14896 751 E 751 (813)
Q Consensus 751 ~ 751 (813)
.
T Consensus 96 ~ 96 (115)
T cd05769 96 T 96 (115)
T ss_pred c
Confidence 3
No 392
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.65 E-value=0.0069 Score=48.85 Aligned_cols=68 Identities=10% Similarity=0.258 Sum_probs=47.5
Q ss_pred ceeccCCCceE-EeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEeeec
Q psy14896 578 EIGNQNWGKAM-FCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSKVS 648 (813)
Q Consensus 578 ~~~~~g~~~~l-~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~~g 648 (813)
..+.+|..+.+ .|.+..|.|++.|+|+.+.... . ........+|+ |.+.....+|.-.++|.+.+..-
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~--~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGT--S-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCc--c-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 34567788888 9999899999999999874321 1 12223334554 55555566788899999998864
No 393
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.63 E-value=0.0041 Score=53.19 Aligned_cols=70 Identities=16% Similarity=0.250 Sum_probs=46.2
Q ss_pred CCceeccCCCceEEeCCCCCC-CccEEEEccCC---CCCcc--------------cCCCeEEEeeCc-----cEEEEeec
Q psy14896 576 APEIGNQNWGKAMFCDPPTNY-PGVNYYWARDY---FPNFV--------------EEDKRVFVSYDG-----ALYFSALE 632 (813)
Q Consensus 576 ~~~~~~~g~~~~l~C~~~~~~-p~~~v~W~k~~---~~~~~--------------~~~~~~~~~~~~-----~L~i~~~~ 632 (813)
....+.+|+.++|.|...... -...+.|||-. .+..+ ....|+....+. .|+|.++.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 445678899999999863221 24569999842 22110 012355554322 49999999
Q ss_pred ccCCeeEEEEEEe
Q psy14896 633 QIDAGNYSCNVQS 645 (813)
Q Consensus 633 ~~d~G~Y~C~a~n 645 (813)
.+|+|.|.|.+..
T Consensus 85 ~~Dsa~YyCa~~~ 97 (117)
T cd04981 85 PEDTAVYYCARGL 97 (117)
T ss_pred HHHCEEEEEEEEc
Confidence 9999999998854
No 394
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.57 E-value=0.015 Score=46.59 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=45.2
Q ss_pred cCCCCCCeEEEEEEec-CCCC--CeEEEEeCCcccCCCceee--------ecceEEEECCCCCCCCE-EEEEEEEcCCC
Q psy14896 682 EAPKAGDKVRLECVAF-GYPV--PSYNWTRRGSPLPRNAYFE--------NFNRILTIPNVKVEDQG-EYICRASNDRS 748 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~-g~P~--p~i~W~k~g~~l~~~~~~~--------~~~~~L~i~~v~~~d~G-~Y~C~a~N~~G 748 (813)
..+.+|..+++.|.+. +.|. ..|.|+|+...+....... .....+++.. +.+|.| .|+|.|.-.++
T Consensus 10 ~~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 10 GPLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred CcccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 3457899999999998 4554 5899999777665443222 1224566655 477777 99999975543
No 395
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.45 E-value=0.0068 Score=50.13 Aligned_cols=71 Identities=13% Similarity=0.341 Sum_probs=42.2
Q ss_pred cccCeEEEEEeeccCCC--cEEEeeccccccceeccccCCCC----CceEEeeCCeEEEeCCCCCCCCceEEEEEEcCc
Q psy14896 481 ILNDITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLS----DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 553 (813)
Q Consensus 481 ~g~~~~l~C~~~g~p~~--~v~W~k~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~ 553 (813)
.++.++|.|.+.|+-+. .++|+|||+++.........+.. +..+.. ...|.+... ...+...|+|.+....
T Consensus 15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~-~s~L~v~~~-~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFL-YSKLTVSAE-DWNAGDVFTCVVGHEA 91 (102)
T ss_pred cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEE-EEEEEEcHH-HhcCCCcEEEEeEeCC
Confidence 46789999999995443 67999999875432111111211 122222 234555442 3345678999998764
No 396
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=96.44 E-value=0.0027 Score=54.44 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=39.7
Q ss_pred CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHh
Q psy14896 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL 81 (813)
Q Consensus 27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~ 81 (813)
..|.. ..|+++||.+. ++ ++|++|...|...|+.|-+..-.+..-+|..++
T Consensus 75 ~tC~G--I~~~~~Cltl~-~p-~tf~eAn~~C~~~g~~LPs~~l~~~~pWL~dYL 125 (161)
T PHA02673 75 RTCDG--INAGNKCLTLK-YP-DTWTNANERCKELGQRLPSPSINKKYPWLTDYL 125 (161)
T ss_pred CcCCC--cccCCeeEEeC-CC-CcHHHHHHHHHhcCCcCCCCcccccCcHHHHHh
Confidence 45653 36689999999 65 899999999999999999866554445666665
No 397
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.39 E-value=0.0085 Score=47.31 Aligned_cols=64 Identities=30% Similarity=0.457 Sum_probs=37.9
Q ss_pred EEEEeeeccCCC--CeEEEeeccc--ccccccc-----ccc-ccCCCccEEee-C-----CeEEEcCCccccCCeeEEEE
Q psy14896 212 ITLSCYAGGYPN--PSYEWFKEDY--VQDRLVA-----NLI-DPLSDKRFTLS-G-----GNLIINDPRQVEDRGSYHCK 275 (813)
Q Consensus 212 v~l~C~~~g~P~--p~v~W~k~g~--~l~~~~~-----~~~-~~~~~~~~~~~-~-----~~l~i~~~~~~~d~G~Y~C~ 275 (813)
|.|.|.+..... ..+.||+... ...-... ... ......|+... . .+|.|.+. +.+|+|.|.|.
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~ 80 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNL-RVEDTGTYYCA 80 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCC-CHHHCEEEEEc
Confidence 889999976444 3899999763 1110000 011 11223455432 1 34777775 89999999996
Q ss_pred e
Q psy14896 276 A 276 (813)
Q Consensus 276 a 276 (813)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 398
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.28 E-value=0.021 Score=46.37 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=38.4
Q ss_pred CCCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCce----eeec-----ceEEEECCCCCCCCEEEEEEEEcC
Q psy14896 685 KAGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAY----FENF-----NRILTIPNVKVEDQGEYICRASND 746 (813)
Q Consensus 685 ~~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~----~~~~-----~~~L~i~~v~~~d~G~Y~C~a~N~ 746 (813)
..+..++|.|.|.|+ |. ..++|.|||..+..+.. .... .+.|+|..-. ....|+|.+...
T Consensus 14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 346789999999985 53 37899999998754321 1111 2345554332 233599999874
No 399
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.28 E-value=0.011 Score=48.13 Aligned_cols=63 Identities=16% Similarity=0.301 Sum_probs=40.8
Q ss_pred CCCCCeEEEEEEecCC--CC-CeEEEEeCCcccCCC--------ceeeecceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896 684 PKAGDKVRLECVAFGY--PV-PSYNWTRRGSPLPRN--------AYFENFNRILTIPNVKVEDQGEYICRASNDR 747 (813)
Q Consensus 684 ~~~G~~v~l~C~~~g~--P~-p~i~W~k~g~~l~~~--------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 747 (813)
...+..++|.|.+.|+ |. ..|+|.++|+. ... +..-.-.+.|.|..-...-...|+|++.+..
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 4468899999999984 43 48999999875 110 0001113457766444444557999998864
No 400
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.25 E-value=1.5 Score=44.38 Aligned_cols=116 Identities=19% Similarity=0.236 Sum_probs=75.3
Q ss_pred cCCCCCCeEEEEEEec--CCCC-CeEEEEeCCcccCCC-----------------cee----------eecceEEEECCC
Q psy14896 682 EAPKAGDKVRLECVAF--GYPV-PSYNWTRRGSPLPRN-----------------AYF----------ENFNRILTIPNV 731 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~--g~P~-p~i~W~k~g~~l~~~-----------------~~~----------~~~~~~L~i~~v 731 (813)
..+..|.+|.|.|..+ |+-. ..++|+--|-++.+- ..+ ....++|+|+++
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 4567799999999986 5443 479999776654311 000 122568999999
Q ss_pred CCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcccccCCceeecCC-CeEEEEEEEccc--CCceEEEEECCEecc
Q psy14896 732 KVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ-ADLTWTCEAFGV--PDVTYSWFRNGELGH 803 (813)
Q Consensus 732 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~~~~~~~~~~~g-~~~~l~C~~~g~--p~~~v~W~k~g~~l~ 803 (813)
..+.+|-|+|+|.-+.-..+..--|.|...-.+.- -.+| ..-...|-+... -++.+.|.-+|....
T Consensus 354 ~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W------~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 354 HINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKW------NTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred EEEcCCceEEEEecCcchhhhhhheEeccEEEEEE------EeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 99999999999987654555555666654332221 1122 233566877543 356799998886543
No 401
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.24 E-value=0.012 Score=47.79 Aligned_cols=61 Identities=20% Similarity=0.525 Sum_probs=39.0
Q ss_pred CCCeEEEEEEecCC-CC-CeEEEEeCCcccCCCce-----ee-ec----ceEEEECCCCCCCCEEEEEEEEcCC
Q psy14896 686 AGDKVRLECVAFGY-PV-PSYNWTRRGSPLPRNAY-----FE-NF----NRILTIPNVKVEDQGEYICRASNDR 747 (813)
Q Consensus 686 ~G~~v~l~C~~~g~-P~-p~i~W~k~g~~l~~~~~-----~~-~~----~~~L~i~~v~~~d~G~Y~C~a~N~~ 747 (813)
.++.++|.|.|.|+ |. ..|+|+|||++ ..+.. .. +. .+.|++..-.....-.|+|++....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999985 43 48899999997 33211 11 11 2345555443333568999998753
No 402
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.24 E-value=0.019 Score=46.67 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=36.8
Q ss_pred ccEEEEeeecc-CC-CCeEEEeecccccccccc-cccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecC
Q psy14896 210 NDITLSCYAGG-YP-NPSYEWFKEDYVQDRLVA-NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK 279 (813)
Q Consensus 210 ~~v~l~C~~~g-~P-~p~v~W~k~g~~l~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~ 279 (813)
+.++|.|.|.| .| ...|+|.|||+.+..... ....+..+ .|.. ...|.+... +....|+|.+...
T Consensus 17 ~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~-~S~L~vt~~---~~~~~ysC~V~H~ 84 (96)
T cd07697 17 GQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYST-TSWLTVTKD---SLGKKFRCIYKHE 84 (96)
T ss_pred CCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEE-EEEEEECch---hCCCeEEEEEEEC
Confidence 45999999998 46 448999999987643221 11112222 2222 122333221 2344599999874
No 403
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.20 E-value=0.01 Score=50.02 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=39.9
Q ss_pred ccEEEEeeecc-CCC-CeEEEeecccccccccccc-cccCC-CccEEeeCCeEEEcCCccccC-CeeEEEEeecCcee
Q psy14896 210 NDITLSCYAGG-YPN-PSYEWFKEDYVQDRLVANL-IDPLS-DKRFTLSGGNLIINDPRQVED-RGSYHCKASNKFGS 282 (813)
Q Consensus 210 ~~v~l~C~~~g-~P~-p~v~W~k~g~~l~~~~~~~-~~~~~-~~~~~~~~~~l~i~~~~~~~d-~G~Y~C~a~n~~g~ 282 (813)
+.++|.|.+.| .|. ..|+|+|||+++....... ..... +..|.. ...|.+... ...| ...|+|.+......
T Consensus 19 ~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~-~S~L~v~~~-~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 19 RKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSI-SSRLRVSAT-EWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred CCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEE-EEEEEEChH-HhccCCCeEEEEEEEeCCc
Confidence 55999999988 466 4899999998775332110 00111 112221 222343321 2223 67899999876443
No 404
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.13 E-value=0.0039 Score=52.80 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=47.6
Q ss_pred CCCCCeEEEEEEecCC-----CCCeEEEEeCCcccCCCc-----------------eeeecceEEEECCCCCCCCEEEEE
Q psy14896 684 PKAGDKVRLECVAFGY-----PVPSYNWTRRGSPLPRNA-----------------YFENFNRILTIPNVKVEDQGEYIC 741 (813)
Q Consensus 684 ~~~G~~v~l~C~~~g~-----P~p~i~W~k~g~~l~~~~-----------------~~~~~~~~L~i~~v~~~d~G~Y~C 741 (813)
..-+++|.|.|.+... +...|+|.++|..+-.-+ .+..++.+|.+...+.- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 4578999999999752 234799999988662111 01123456888775555 899999
Q ss_pred EEEcCCCceEEEEEEEEE
Q psy14896 742 RASNDRSALESSVTISIQ 759 (813)
Q Consensus 742 ~a~N~~G~~~~~~~l~V~ 759 (813)
.|.+...+.+..+.|...
T Consensus 103 eVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 103 EVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEETTEEEEEEEEEEE-
T ss_pred EEEecCCCceEEEEEEEE
Confidence 999887778888888774
No 405
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.10 E-value=0.013 Score=47.57 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=41.4
Q ss_pred eccCCCceEEeCCCCCC-C-ccEEEEccCCCCCcccCCCeEEEeeCccEEEEee---cc---cCCeeEEEEEEeeec
Q psy14896 580 GNQNWGKAMFCDPPTNY-P-GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSAL---EQ---IDAGNYSCNVQSKVS 648 (813)
Q Consensus 580 ~~~g~~~~l~C~~~~~~-p-~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~---~~---~d~G~Y~C~a~n~~g 648 (813)
...+..++|.|.+.+-+ | ...|+|.++|.+.... .......+|++.+... .. .-...|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~--t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQ--TSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEE--cCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 34577899999996545 5 4789999998651111 1122234666444332 22 333569999998764
No 406
>PHA02633 hypothetical protein; Provisional
Probab=96.09 E-value=0.016 Score=41.17 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=34.5
Q ss_pred ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCc
Q psy14896 723 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN 763 (813)
Q Consensus 723 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~ 763 (813)
...|-|-++..+|+|.|.|+..|+-=....++.|.|...+.
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~ 57 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIE 57 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeeccc
Confidence 45788999999999999999999866778888888876543
No 407
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.97 E-value=0.02 Score=45.83 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=44.7
Q ss_pred eeecCCCeEEEecCCCCCCc--ceEEEeeccccccccCCccEE------EccCccEEEeeeeecCCe-eeEEEEeeecc
Q psy14896 306 IGNQNWGKAMFCDPPTNYPG--VNYYWARDYFPNFVEEDKRVF------VSYDGALYFSALEQIDAG-NYSCNVQSKVS 375 (813)
Q Consensus 306 ~~~~~~~~~l~C~~~~~~p~--~~v~W~k~~~~~~~~~~~~~~------~~~~~~L~i~~v~~~D~G-~Y~C~a~n~~g 375 (813)
...+|..+++.|.+..+.|. .++.|+|++..+.... ..-. ......+++.. +++|.| .|+|.|.-...
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 34789999999999888888 8999999776532221 1100 00112455555 477776 99999975543
No 408
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.85 E-value=0.012 Score=47.76 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=39.3
Q ss_pred cCCCceEEeCCCCCCCc-cEEEEccCCCCCcccC-CCeEEEeeCccEEEE---eecccC---CeeEEEEEEeee
Q psy14896 582 QNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEE-DKRVFVSYDGALYFS---ALEQID---AGNYSCNVQSKV 647 (813)
Q Consensus 582 ~g~~~~l~C~~~~~~p~-~~v~W~k~~~~~~~~~-~~~~~~~~~~~L~i~---~~~~~d---~G~Y~C~a~n~~ 647 (813)
.++.++|.|.+.+-+|. ..|+|+|||.+ .... ........+|+..+. .+...| .-.|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 45668999999655664 67999999975 2111 011112225653221 344444 668999999864
No 409
>PHA03093 EEV glycoprotein; Provisional
Probab=95.73 E-value=0.013 Score=51.83 Aligned_cols=51 Identities=33% Similarity=0.562 Sum_probs=40.5
Q ss_pred cCCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHh
Q psy14896 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL 81 (813)
Q Consensus 26 ~~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~ 81 (813)
...|.- ..|+++||.|..++ ++|+||...|...|+.|-+ .+.. ..+|..++
T Consensus 98 ~~~C~G--I~~~~~C~~~~~ep-kTf~dA~~~C~~~g~~LPs-~~l~-~~WL~dYL 148 (185)
T PHA03093 98 KESCKG--IVYDGSCYIFHSEP-KTFSDAKADCAKKSSTLPN-SNLM-TTWLSDYL 148 (185)
T ss_pred cCcCCC--eecCCEeEEecCCC-cCHHHHHHHHHhcCCcCCC-cchH-HHHHHHHh
Confidence 445753 26789999999997 9999999999999999999 3322 23887776
No 410
>KOG4597|consensus
Probab=95.68 E-value=0.021 Score=58.29 Aligned_cols=82 Identities=18% Similarity=0.073 Sum_probs=63.5
Q ss_pred CCCCcCCCCCCeEEEEEEecCCCCCeEEEEe---CCccc--CCCceee----ecceEEEECCCCCCCCEEEEEEEEcCCC
Q psy14896 678 KTFPEAPKAGDKVRLECVAFGYPVPSYNWTR---RGSPL--PRNAYFE----NFNRILTIPNVKVEDQGEYICRASNDRS 748 (813)
Q Consensus 678 ~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k---~g~~l--~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 748 (813)
-+....+..|+++.++|-+.|.|.+.|+|.+ |+..+ ..+..+. .....|.|.+....|+|.|+|.|.|..|
T Consensus 202 cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g 281 (560)
T KOG4597|consen 202 CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG 281 (560)
T ss_pred CcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence 3344667899999999999999999999976 33322 2221111 1234699999999999999999999999
Q ss_pred ceEEEEEEEEE
Q psy14896 749 ALESSVTISIQ 759 (813)
Q Consensus 749 ~~~~~~~l~V~ 759 (813)
...+.+.+.+.
T Consensus 282 ~~~rdv~c~s~ 292 (560)
T KOG4597|consen 282 FLRRDVPCSSV 292 (560)
T ss_pred eeeccceeeee
Confidence 99998888875
No 411
>PHA02633 hypothetical protein; Provisional
Probab=95.50 E-value=0.046 Score=38.97 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=27.4
Q ss_pred eCCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEeee
Q psy14896 254 SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 293 (813)
Q Consensus 254 ~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~ 293 (813)
.+..|.|.++ ..+|+|.|.|..+|..--. ..++.|+|.
T Consensus 16 ~~~nLwilpa-~~sDSGiYiC~~rn~t~c~-~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNP-TQSDSGIYMCITKNETYSD-MMKFDLCIC 53 (63)
T ss_pred ccccEEEecc-ccccCcEEEEEEcCCCeeE-EEEEEEEEe
Confidence 3557888886 7999999999999865433 334555554
No 412
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.23 E-value=0.034 Score=52.74 Aligned_cols=50 Identities=20% Similarity=0.393 Sum_probs=42.7
Q ss_pred CccEEEEccCCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEeee
Q psy14896 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647 (813)
Q Consensus 597 p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 647 (813)
..|.+.|..++.. .+..+.++.+...|.|.+.+...+++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~-~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGK-PLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCc-ccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 4688999987553 3667788999999999999999999999999997755
No 413
>PHA02982 hypothetical protein; Provisional
Probab=95.18 E-value=0.14 Score=46.36 Aligned_cols=114 Identities=13% Similarity=0.210 Sum_probs=70.9
Q ss_pred cCCCCCCeEEEEEEec-CCCCCeEEEEeCCcccCC----------------Cc-------eeeecceEEEECCCCCCCCE
Q psy14896 682 EAPKAGDKVRLECVAF-GYPVPSYNWTRRGSPLPR----------------NA-------YFENFNRILTIPNVKVEDQG 737 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~-g~P~p~i~W~k~g~~l~~----------------~~-------~~~~~~~~L~i~~v~~~d~G 737 (813)
+.+..|+.|.|+|... +.--....|+++...... +. .++...++|+|+++..+..|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 4567899999999853 222347899986432211 00 12345678999999999999
Q ss_pred EEEEEEEcCCCceEE-EEEEEEEcCCcccccCCceeecCC-CeEEEEEEEcccCCceEEEEECCEe
Q psy14896 738 EYICRASNDRSALES-SVTISIQAEPNFTIPLTDKHMDNQ-ADLTWTCEAFGVPDVTYSWFRNGEL 801 (813)
Q Consensus 738 ~Y~C~a~N~~G~~~~-~~~l~V~~~P~~~~~~~~~~~~~g-~~~~l~C~~~g~p~~~v~W~k~g~~ 801 (813)
-|+|+|....|..+. .--|.|+.--.+- .+.++ ..-...|-+-+.-.+-..|.-+|..
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V~~~~V~~------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEIQKEDILY------VVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred ceEEEEecCCCchheeheeeeEecceEEE------EEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 999999987766544 6667774322221 11222 3346678774322221288877763
No 414
>PHA03042 CD47-like protein; Provisional
Probab=95.07 E-value=0.077 Score=50.47 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=49.7
Q ss_pred CCCCeEEEEEEecCC-----CCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 685 KAGDKVRLECVAFGY-----PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 685 ~~G~~v~l~C~~~g~-----P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
.-.+++.+.|.+..- -.-.+.|..+|..+-..+.. ..++|.+..... =.|+|+|+|.+...+.+..+.|.-.
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~~~-l~GNYTCEv~~l~n~gk~~IeLk~~ 105 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFSKN-LSGNYTCEAINKFNKIKNTIELQYV 105 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecccc-CCCceeEEEeecccCccEEEEEEEE
Confidence 468899999999742 23479999999987554433 246677755443 3799999999876555555555443
No 415
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.95 E-value=0.036 Score=52.58 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=42.7
Q ss_pred CcceEEEeeccccccccCCccEEEccCccEEEeeeeecCCeeeEEEEeeec
Q psy14896 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374 (813)
Q Consensus 324 p~~~v~W~k~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 374 (813)
..|.+.|..++... +....++.+..+|.|.+.+...+++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~-l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKP-LSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcc-cCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 45799999775543 678889999999999999999999999999997654
No 416
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=94.76 E-value=3.6 Score=41.68 Aligned_cols=121 Identities=13% Similarity=0.240 Sum_probs=69.6
Q ss_pred ccccCeEEEEEee--ccCC-CcEEEeeccccccceecc----c---cCCCCCceEEe----------eCCeEEEeCCCCC
Q psy14896 480 SILNDITLSCYAG--GYPN-PSYEWFKEDYVQDRLVAN----L---IDPLSDKRFTL----------SGGNLIINDPRQV 539 (813)
Q Consensus 480 ~~g~~~~l~C~~~--g~p~-~~v~W~k~~~~~~~~~~~----~---~~~~~~~~~~~----------~~~~l~i~~~~~~ 539 (813)
.+|..+.|.|..+ |+.. ..+.|+-.|-++..+.+. . ........+.+ ..++|+|.++ ..
T Consensus 277 ~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka-~I 355 (500)
T PHA02914 277 EVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA-HI 355 (500)
T ss_pred ccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE-EE
Confidence 6799999999985 3433 468999988776543332 1 11112222222 2468999997 99
Q ss_pred CCCceEEEEEEcCceeEEeecEEEEEeecccccccCCCceeccCCCc-eEEeCCCCC-CCccEEEEccCCC
Q psy14896 540 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK-AMFCDPPTN-YPGVNYYWARDYF 608 (813)
Q Consensus 540 ~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~-~l~C~~~~~-~p~~~v~W~k~~~ 608 (813)
++.|=|.|+|....-....... |.|...--+. -..++... ...|-+-.. ..++++.|.-+|.
T Consensus 356 ~N~GCY~~~a~~g~~~~ec~~C-l~V~d~V~f~------W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV 419 (500)
T PHA02914 356 NNAGCYEAQAFMGKFKEECRHC-FKVADHVFFK------WNTEGDNETKVACYAAQYDMQPFSILWKSNGV 419 (500)
T ss_pred EcCCceEEEEecCcchhhhhhh-eEeccEEEEE------EEeccCceEEEEEEEEecccCCceeEEEEccE
Confidence 9999999999865322222211 1111000000 01233343 477887322 3456799998873
No 417
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.33 E-value=0.18 Score=40.71 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=46.2
Q ss_pred eEEEEEEecCCCCCe--EEEEeCCcccCCC---c--eeeecceEEEECCCCCCCCEEEEEEEEcCCCce-EEEEEEEEE
Q psy14896 689 KVRLECVAFGYPVPS--YNWTRRGSPLPRN---A--YFENFNRILTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQ 759 (813)
Q Consensus 689 ~v~l~C~~~g~P~p~--i~W~k~g~~l~~~---~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 759 (813)
+++=.-...+.+... ++|..+..+.... . .++..+-.|.|+.++..|+|.|.-+++|.-|.. ...+++.|-
T Consensus 29 sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 29 SVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred EEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 455455555566554 6665444333221 1 345567789999999999999999999999986 456777664
No 418
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=94.30 E-value=0.13 Score=42.76 Aligned_cols=62 Identities=13% Similarity=0.161 Sum_probs=42.2
Q ss_pred cCCCCCCeEEEEEEecCCCC---CeEEEEeCCc-ccC-------CC-------cee------eecceEEEECCCCCCCCE
Q psy14896 682 EAPKAGDKVRLECVAFGYPV---PSYNWTRRGS-PLP-------RN-------AYF------ENFNRILTIPNVKVEDQG 737 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~---p~i~W~k~g~-~l~-------~~-------~~~------~~~~~~L~i~~v~~~d~G 737 (813)
..+..|+.++|+|.++|.-. -.+.|+|... .+. .+ .++ ....-.|.|.+++.+|++
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa 87 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTD 87 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCe
Confidence 45678999999999987543 4689998421 210 00 011 111236999999999999
Q ss_pred EEEEEE
Q psy14896 738 EYICRA 743 (813)
Q Consensus 738 ~Y~C~a 743 (813)
.|.|..
T Consensus 88 ~Y~Ca~ 93 (115)
T cd05721 88 IYFCKI 93 (115)
T ss_pred EEEEEe
Confidence 999976
No 419
>PF05966 Chordopox_A33R: Chordopoxvirus A33R protein; InterPro: IPR009238 This family consists of several Chordopoxvirus A33R proteins. A33R plays a role in promoting Ab-resistant cell-to-cell spread of virus [] and interacts with A36R to incorporate the protein into the outer membrane of intracellular enveloped virions (IEV) [].; PDB: 3K7B_A.
Probab=94.19 E-value=0.022 Score=51.01 Aligned_cols=50 Identities=22% Similarity=0.444 Sum_probs=32.1
Q ss_pred CCCchhhhccCCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHh
Q psy14896 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL 81 (813)
Q Consensus 27 ~~Cp~~w~~~~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~ 81 (813)
..|.. ..|+++||.+-.++ ++|++|...|...|++|.+ .+ -...+|..++
T Consensus 103 ~tC~G--I~~~n~Cl~~~~~p-~T~~~A~~~C~~~g~~LPs-~~-l~~~WL~dYL 152 (190)
T PF05966_consen 103 STCDG--IVYDNKCLTLNYEP-KTFDEANSDCNNKGQTLPS-KD-LMKTWLSDYL 152 (190)
T ss_dssp S--SS--EEETTEEEEEEEEE-EEHHHHHHHHHHTT-B----HH-HTTSTTHHHH
T ss_pred CcCCC--cccCCEEEEecCCC-CCHHHHHHHHHhcCCcCCC-cc-hHHHHHHHHh
Confidence 34543 45688999999886 8999999999999999998 11 1223555554
No 420
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=94.18 E-value=0.075 Score=45.21 Aligned_cols=80 Identities=13% Similarity=0.290 Sum_probs=41.6
Q ss_pred ccEEEEeeecc-----CCCCeEEEeeccccccccccccc----ccCCCccE-EeeCC--eEEEcCCccccCCeeEEEEee
Q psy14896 210 NDITLSCYAGG-----YPNPSYEWFKEDYVQDRLVANLI----DPLSDKRF-TLSGG--NLIINDPRQVEDRGSYHCKAS 277 (813)
Q Consensus 210 ~~v~l~C~~~g-----~P~p~v~W~k~g~~l~~~~~~~~----~~~~~~~~-~~~~~--~l~i~~~~~~~d~G~Y~C~a~ 277 (813)
++|.|.|.+.. .+...|+|.++|..+-...+..- +...+.++ .+..| +|.+... ..-.|.|+|.|.
T Consensus 28 ~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~--~a~~GnYTCeVt 105 (130)
T PF08204_consen 28 DTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKS--DAVEGNYTCEVT 105 (130)
T ss_dssp SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHH--HHH-EEEEEEEE
T ss_pred CCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcch--hccccceEEEEE
Confidence 77999999964 23446999999986522111000 00001111 01122 3655542 333999999999
Q ss_pred cCceeeEeeeeEEee
Q psy14896 278 NKFGSIISESVQLAF 292 (813)
Q Consensus 278 n~~g~~~s~~~~l~v 292 (813)
....+. ...+.|..
T Consensus 106 ~~~~eg-e~~i~Lk~ 119 (130)
T PF08204_consen 106 ELSREG-ETTIELKY 119 (130)
T ss_dssp ETTEEE-EEEEEEEE
T ss_pred ecCCCc-eEEEEEEE
Confidence 766655 55666665
No 421
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=94.11 E-value=0.3 Score=40.61 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=37.1
Q ss_pred ccEEEEeeeccCC--C-CeEEEeeccccccccccc-----ccccCCCccEEee----CC--eEEEcCCccccCCeeEEEE
Q psy14896 210 NDITLSCYAGGYP--N-PSYEWFKEDYVQDRLVAN-----LIDPLSDKRFTLS----GG--NLIINDPRQVEDRGSYHCK 275 (813)
Q Consensus 210 ~~v~l~C~~~g~P--~-p~v~W~k~g~~l~~~~~~-----~~~~~~~~~~~~~----~~--~l~i~~~~~~~d~G~Y~C~ 275 (813)
+.++|.|+++|.- . -.+.|+|.-.-..+-... ........+++.+ +. +|.+.+. +.+|++.|.|.
T Consensus 14 ~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L-~a~DTa~Y~Ca 92 (115)
T cd05721 14 GAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL-RANQTDIYFCK 92 (115)
T ss_pred CCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC-CHHHCeEEEEE
Confidence 5599999997743 3 468999864221010000 0111122332221 22 3666675 89999999997
Q ss_pred e
Q psy14896 276 A 276 (813)
Q Consensus 276 a 276 (813)
.
T Consensus 93 ~ 93 (115)
T cd05721 93 I 93 (115)
T ss_pred e
Confidence 5
No 422
>PHA02982 hypothetical protein; Provisional
Probab=94.06 E-value=0.27 Score=44.69 Aligned_cols=118 Identities=8% Similarity=0.020 Sum_probs=70.5
Q ss_pred eeccCCCceEEeCCCCCCCccEEEEccCCCC-Cc--------c--------cCCCeEEEee---CccEEEEeecccCCee
Q psy14896 579 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NF--------V--------EEDKRVFVSY---DGALYFSALEQIDAGN 638 (813)
Q Consensus 579 ~~~~g~~~~l~C~~~~~~p~~~v~W~k~~~~-~~--------~--------~~~~~~~~~~---~~~L~i~~~~~~d~G~ 638 (813)
....++.+.|.|..+.+..-....|++++.- +. + +....+.++- .++|+|+++..+..|-
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 4456888999999877777788999986421 00 0 0012223332 2369999999999999
Q ss_pred EEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCC-CeEEEEEEecCCCCCeEEEEeCCcc
Q psy14896 639 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG-DKVRLECVAFGYPVPSYNWTRRGSP 712 (813)
Q Consensus 639 Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G-~~v~l~C~~~g~P~p~i~W~k~g~~ 712 (813)
|+|+|....+.... ..--|.|+..-... ...++ ....+.|-+-+.-.+-..|.-+|..
T Consensus 115 Ytc~~ks~~~k~E~--c~kCl~V~~~~V~~--------------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 115 FTCEAKDAEGKEET--CEKCLEIQKEDILY--------------VVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred eEEEEecCCCchhe--eheeeeEecceEEE--------------EEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99999876654332 12234442211110 11123 3457889886544443489877763
No 423
>PHA03282 envelope glycoprotein E; Provisional
Probab=93.33 E-value=2.6 Score=43.72 Aligned_cols=48 Identities=23% Similarity=0.289 Sum_probs=33.0
Q ss_pred CceEEeeCCeEEEeCCCCCCCCceEEEEEEcCceeE-EeecEEEEEeecc
Q psy14896 521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQLAFGFIG 569 (813)
Q Consensus 521 ~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~-~s~~~~l~v~~~p 569 (813)
..+....+++|.|.++ +.+|+|.|+..+....... ....+.|.|...+
T Consensus 116 ~~rvs~~n~tl~l~~a-~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p~~ 164 (540)
T PHA03282 116 PPRVAVVNGTLVLREA-RETDSGMYVLSVSRAPNSTAARAVVFLVVGPRP 164 (540)
T ss_pred CcceeEecceEEEeec-cccCCceEEEEecCCCCchhheEEEEEEecCCC
Confidence 4566777899999997 9999999999875432222 2233566665543
No 424
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=92.57 E-value=0.6 Score=36.33 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=35.5
Q ss_pred CCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEE-EcCCCceEEEEEEEE
Q psy14896 701 VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRA-SNDRSALESSVTISI 758 (813)
Q Consensus 701 ~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~N~~G~~~~~~~l~V 758 (813)
.+.+.|+-.+..+.. ....+.......+|+|...|.| .|+.-.....+.|.|
T Consensus 26 ~~~~~l~~~~~k~~~------~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSLE------TKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEEE------ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccccc------cceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 467888766554422 2456777888999999999999 665544555555554
No 425
>KOG4597|consensus
Probab=91.93 E-value=0.34 Score=49.92 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=61.6
Q ss_pred CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeec---ccccccccccccccCCCccEEeeCCeEEEcCCccc
Q psy14896 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE---DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 266 (813)
Q Consensus 190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~---g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 266 (813)
|.+...|....+..+ ++..++|-+.|.|.+.|.|.+- ++.+. ..-+...+.....+...|.|-+. ..
T Consensus 197 c~l~~cpa~w~vg~w-----etcS~tCg~~G~q~r~V~c~qv~anr~~vv----~~~nq~~e~p~vtstcql~ic~e-wq 266 (560)
T KOG4597|consen 197 CALVDCPAEWFVGDW-----ETCSSTCGVQGRQYRVVTCEQVFANRENVV----MRPNQTVENPVVTSTCQLVICNE-WQ 266 (560)
T ss_pred cccccCcchhhcccc-----hhhcccccccCCcCceeeeehhhcccccee----ecCccccCCcceeeeeeEEEcch-hh
Confidence 455555666665555 7799999999999999999764 22210 01111122222334566888886 89
Q ss_pred cCCeeEEEEeecCceeeEeeeeEEee
Q psy14896 267 EDRGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 267 ~d~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
.|+|.|+|.|.|..|-. ...+.+.+
T Consensus 267 ~~a~w~tCs~rcg~g~~-~rdv~c~s 291 (560)
T KOG4597|consen 267 ADAGWYTCSARCGAGFL-RRDVPCSS 291 (560)
T ss_pred cCCCceeecccccccee-eccceeee
Confidence 99999999999999876 44555554
No 426
>PHA03042 CD47-like protein; Provisional
Probab=91.47 E-value=0.64 Score=44.49 Aligned_cols=67 Identities=24% Similarity=0.403 Sum_probs=41.8
Q ss_pred ccEEEEeeeccC-----CCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeE
Q psy14896 210 NDITLSCYAGGY-----PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII 284 (813)
Q Consensus 210 ~~v~l~C~~~g~-----P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~ 284 (813)
+++.+.|.++.- -...++|..||..+-. .+.. ...+|.... ..+-.|.|+|+|.+...+.
T Consensus 32 ~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~---------~n~t---n~aSL~~~f--~~~l~GNYTCEv~~l~n~g- 96 (286)
T PHA03042 32 KTIVIVCNLNLLIYYNISNIHINWKFNNKVIFK---------KNNT---NTSSLKFNF--SKNLSGNYTCEAINKFNKI- 96 (286)
T ss_pred ceEEEEeecCChhhcCccceEEEEEeCCeeEEE---------ecCC---cceEEEEec--cccCCCceeEEEeecccCc-
Confidence 669999999751 2457999999976521 1111 012344443 4566999999999765543
Q ss_pred eeeeEEe
Q psy14896 285 SESVQLA 291 (813)
Q Consensus 285 s~~~~l~ 291 (813)
...+.|+
T Consensus 97 k~~IeLk 103 (286)
T PHA03042 97 KNTIELQ 103 (286)
T ss_pred cEEEEEE
Confidence 3445554
No 427
>cd03519 Link_domain_HAPLN_module_2 Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.
Probab=91.22 E-value=0.14 Score=40.05 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.0
Q ss_pred cCCHHHHHhHcccCCCeEeeeCC
Q psy14896 48 LKTRNDAKLNCKSLDSDLANVND 70 (813)
Q Consensus 48 ~~~~~~a~~~C~~~~~~L~~i~~ 70 (813)
+.||+||++.|+..||+||+..-
T Consensus 10 ~l~f~eA~~aC~~~ga~lAs~~Q 32 (91)
T cd03519 10 KLTFSEAVAACQRDGAQIAKVGQ 32 (91)
T ss_pred ccCHHHHHHHHHHcCCEeCCHHH
Confidence 69999999999999999998754
No 428
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=91.15 E-value=3.5 Score=38.54 Aligned_cols=130 Identities=14% Similarity=0.270 Sum_probs=61.6
Q ss_pred eEEEeecccccccccccccccCCCccEEeeCC------eEEEcCCccccCCeeEEEEeecCceee----EeeeeEEeeee
Q psy14896 225 SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG------NLIINDPRQVEDRGSYHCKASNKFGSI----ISESVQLAFGF 294 (813)
Q Consensus 225 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~d~G~Y~C~a~n~~g~~----~s~~~~l~v~~ 294 (813)
.++||.||.++.... ..+......+| +|.+......+-.-..+|++.=..+.. .+.++.-.|..
T Consensus 8 ~~~Wf~dg~~v~~~~------~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~ 81 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRF------IRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYP 81 (211)
T ss_pred EEEEEECCEeCCccc------eeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceec
Confidence 789999998664211 11111112234 344432223344557999987322221 12222223333
Q ss_pred ecccccCCCCceeecCCCeEEEecCCCCCC--cceEEEeeccccccccCCccEEEc-----cCccEEEeeeeec--CCe-
Q psy14896 295 IGEFNLKRAPEIGNQNWGKAMFCDPPTNYP--GVNYYWARDYFPNFVEEDKRVFVS-----YDGALYFSALEQI--DAG- 364 (813)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~C~~~~~~p--~~~v~W~k~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~--D~G- 364 (813)
+|.+.+. . .+-...|.+ .-.| ...+.|.-++... ......... ..|...|.+..+. ..|
T Consensus 82 ~P~vsv~-------F-~~g~AVC~A-~CVP~~~v~l~W~v~d~~~--~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~ 150 (211)
T PF02124_consen 82 KPRVSVR-------F-EDGYAVCTA-RCVPRGNVTLRWSVGDDPS--PAPAATEITGVCAEHPGLVNIRSRRPLSDEDGP 150 (211)
T ss_pred CCEEEEE-------e-cCCEEEEEc-ceeeCCCeEEEEEECCccC--CCCCceeecCcccCCcceeEeecccCCCccCCc
Confidence 3333322 2 222334553 2223 2799999887653 222222222 2345666665533 235
Q ss_pred -eeEEEEe
Q psy14896 365 -NYSCNVQ 371 (813)
Q Consensus 365 -~Y~C~a~ 371 (813)
+|+|.+.
T Consensus 151 ~~YtC~l~ 158 (211)
T PF02124_consen 151 VEYTCRLI 158 (211)
T ss_pred eeEEEEEe
Confidence 9999986
No 429
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=90.67 E-value=0.73 Score=37.33 Aligned_cols=44 Identities=25% Similarity=0.499 Sum_probs=32.6
Q ss_pred CccEEee--CCeEEEcCCccccCCeeEEEEeecCceeeEeeeeEEee
Q psy14896 248 DKRFTLS--GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 292 (813)
Q Consensus 248 ~~~~~~~--~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v 292 (813)
..++.+. +-+|+|..+ +..|+|.|.-++++..|.+......+.|
T Consensus 61 n~r~~F~~enlaLlIkaA-q~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 61 NNRFNFTSENLALLIKAA-QPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp HHHEEEETTTTEEEESS--SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred cceEeeeccCceEEEeec-CcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 4566665 667888775 9999999999999999998655555544
No 430
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.66 E-value=1.9 Score=33.58 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=20.1
Q ss_pred EEEcCCccccCCeeEEEEee-cCceeeEeeeeEEee
Q psy14896 258 LIINDPRQVEDRGSYHCKAS-NKFGSIISESVQLAF 292 (813)
Q Consensus 258 l~i~~~~~~~d~G~Y~C~a~-n~~g~~~s~~~~l~v 292 (813)
+.+... ..+|+|.+.|.|+ +..-.. ...+.|.|
T Consensus 45 ~~~~~~-~~~d~G~w~C~a~~~~~k~~-~s~~~i~v 78 (80)
T PF05790_consen 45 VSTFTP-TTEDSGTWVCTASDNEPKER-ESKIEILV 78 (80)
T ss_dssp EEEESB-TCGGSEEEEEEEEECTTEEE-EEEEEEEE
T ss_pred EEEecC-CCCCCEEEEEEEcCCceEEE-EEEEEEEc
Confidence 344443 6899999999994 443332 33344443
No 431
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=90.17 E-value=0.5 Score=50.39 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=12.6
Q ss_pred CccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCC--CCCC----------CCCcCCCCCCcE
Q psy14896 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN--NFPK----------TFPEAPKAGDKV 417 (813)
Q Consensus 350 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~--~~~~----------~~~~~v~~g~~~ 417 (813)
++.|.|.+++.+|+|.|+-...+..+..... .+.|.|..+........|. ..+. .......+|+++
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~--~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf 165 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQS--VVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTF 165 (439)
T ss_dssp ------------------------------------------------------------SEEEEEE--SEEE--TT--E
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEE--EEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcE
Confidence 4679999999999999999998766543332 2666666543331122221 1111 111125889998
Q ss_pred EEEEEEeec--C-C---CeeeEeecC
Q psy14896 418 RLECVAFGY--P-V---PSYNWTRRG 437 (813)
Q Consensus 418 ~l~C~~~g~--p-~---p~i~W~~~~ 437 (813)
.|.-.+... . . .+|.|+.-.
T Consensus 166 ~~~v~l~~~~~d~~~f~~~i~W~~~~ 191 (439)
T PF02480_consen 166 HLSVHLQSEAHDDPPFSLEIDWYYMP 191 (439)
T ss_dssp E---EEEEEESSS--EEEEEEEEEE-
T ss_pred EEeEEEEeccCCCCCeeEEEEEEEec
Confidence 888777432 2 1 278898754
No 432
>KOG1026|consensus
Probab=89.42 E-value=0.93 Score=50.92 Aligned_cols=148 Identities=19% Similarity=0.184 Sum_probs=84.2
Q ss_pred cccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896 209 LNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 288 (813)
Q Consensus 209 g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~ 288 (813)
|..+++.|.+.+.|.|.+.|+.++-...+. ...+..-.+-..++.+ ++|.+.|..|.. -..+
T Consensus 207 ~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~--------~~~~~~c~~~~~~~~~---------~~c~~E~~~~~~-~~~v 268 (774)
T KOG1026|consen 207 GSSITLKCSQAGIPVPCHYWFPNCLASSNT--------NQTSSLCRSECEVLEN---------DLCIAENAVARS-NPSI 268 (774)
T ss_pred cchheeeeecccCCCcceeeecccccccCC--------Ccccccccccceeeec---------hhhHHHHhhhhc-Ccee
Confidence 366999999999999999999998543211 0000000011111111 999999998875 3344
Q ss_pred EEeeeeecccccCCCCceeecCCCeEEEecC--CCCCCcceEEEeeccccccccCCccEEEccC-ccEEEeeeeecCCee
Q psy14896 289 QLAFGFIGEFNLKRAPEIGNQNWGKAMFCDP--PTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAGN 365 (813)
Q Consensus 289 ~l~v~~~~~~~~~~~~~~~~~~~~~~l~C~~--~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~-~~L~i~~v~~~D~G~ 365 (813)
.+.+..+........+... .-.|.. ..++|.+...|..++..+............. +-+....-+..+.|.
T Consensus 269 ~~~~~~p~~~~~~~~~~~~------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~ 342 (774)
T KOG1026|consen 269 LLVVDLPKAEVLLCSPLSD------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGN 342 (774)
T ss_pred eeEEecccccccCCCCccc------cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCc
Confidence 5554443221111111100 222332 2467889999999987644433333333332 334444446778899
Q ss_pred eEEEEeeeccccCCC
Q psy14896 366 YSCNVQSKVSDTGRN 380 (813)
Q Consensus 366 Y~C~a~n~~g~~~~~ 380 (813)
|+|.+.+..|.....
T Consensus 343 ~~~~~e~~~g~~~~r 357 (774)
T KOG1026|consen 343 YTLFPELPGGKNYCR 357 (774)
T ss_pred ceeeecccCcccccc
Confidence 999999998765443
No 433
>KOG1026|consensus
Probab=88.38 E-value=0.62 Score=52.23 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=73.4
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcC
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE 761 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 761 (813)
..+..|..+++.|.+.+.|.|.+.|+.++............-..+.....+ ++|.++|..|....++.+.+..|
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~------~~c~~E~~~~~~~~~v~~~~~~p 275 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN------DLCIAENAVARSNPSILLVVDLP 275 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec------hhhHHHHhhhhcCceeeeEEecc
Confidence 457889999999999999999999998876554433211111111111111 99999999999999999999888
Q ss_pred CcccccCCceeecCCCeEEEEEEEcccCCceEEEEECCEecccc
Q psy14896 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQM 805 (813)
Q Consensus 762 P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~k~g~~l~~~ 805 (813)
+..........- ...-+.-.+.++|.+.-.|..+|..++..
T Consensus 276 ~~~~~~~~~~~~---~~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (774)
T KOG1026|consen 276 KAEVLLCSPLSD---HHNCIPIGITANPGPALHWCYNGSGLNYR 316 (774)
T ss_pred cccccCCCCccc---cCceeeeeccCCCCCceeeeecCccceEe
Confidence 654322111111 11111112236777888999988776543
No 434
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=88.27 E-value=4.4 Score=32.46 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=33.7
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeE
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII 284 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~ 284 (813)
..|.+++.+. .+.+.||.||+.+... .. ...+.+ .....|.|+-.+....|...
T Consensus 32 ~~l~l~a~~~-~~~~~W~vdg~~~g~~-------~~-------~~~~~~----~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 32 QPLVLKAAGG-RGPVYWFVDGEPLGTT-------QP-------GHQLFW----QPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred ceEEEEEeCC-CCcEEEEECCEEcccC-------CC-------CCeEEe----CCCCCeeEEEEEEcCCCCEE
Confidence 4455555443 4499999999865211 01 122322 34678999999998888753
No 435
>PHA03286 envelope glycoprotein E; Provisional
Probab=88.13 E-value=24 Score=36.91 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=32.3
Q ss_pred CCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEe
Q psy14896 528 GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 566 (813)
Q Consensus 528 ~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~ 566 (813)
.+.|.|.++ +..++|.|+-...|..|......+.+.|.
T Consensus 126 ~~~L~I~nA-t~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 126 GKELTILNA-SSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CCceEEeec-cccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 357999997 99999999999999988877777777774
No 436
>PHA03283 envelope glycoprotein E; Provisional
Probab=88.09 E-value=6.5 Score=41.74 Aligned_cols=86 Identities=16% Similarity=0.106 Sum_probs=51.7
Q ss_pred CccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCC---CC----------CCcCCCCCCc
Q psy14896 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFP---KT----------FPEAPKAGDK 416 (813)
Q Consensus 350 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~---~~----------~~~~v~~g~~ 416 (813)
.+.|.|.+++.+++|.|+--..+..+ .. ...+.|+|+.++......+|...+ .. .+....+|++
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~--~~-~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDt 209 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM--MK-HSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDS 209 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc--eE-EEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCc
Confidence 35799999999999999999887544 22 234667776643322221221111 11 1122578999
Q ss_pred EEEEEEEeecC--C---CeeeEeecCC
Q psy14896 417 VRLECVAFGYP--V---PSYNWTRRGS 438 (813)
Q Consensus 417 ~~l~C~~~g~p--~---p~i~W~~~~~ 438 (813)
+.++-...... . .+|.|+.-.-
T Consensus 210 f~lsi~l~s~~~d~~fs~~i~Wyy~p~ 236 (542)
T PHA03283 210 FDLSVHLESDIGDPSFSATIDWYYMNT 236 (542)
T ss_pred eeEeEEEeeccCCCCceEEEEEEEecC
Confidence 98877664322 1 2789987543
No 437
>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e.g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.
Probab=87.98 E-value=0.21 Score=41.71 Aligned_cols=22 Identities=32% Similarity=0.807 Sum_probs=17.8
Q ss_pred cccccCCCchhhhccCCeEEEE
Q psy14896 22 IDELELRCPQHWVQYRDSCYRF 43 (813)
Q Consensus 22 ~~~~~~~Cp~~w~~~~~~Cy~~ 43 (813)
..+....||..|.+|+.+||||
T Consensus 98 ~q~~g~~~e~~W~cyg~kCYYF 119 (119)
T PF08391_consen 98 SQHTGKPCEKHWFCYGVKCYYF 119 (119)
T ss_dssp TTSTT-EEECEEEEETTEEEEE
T ss_pred hhcCCCCCCCceeeeCceeeeC
Confidence 3455677999999999999998
No 438
>cd03520 Link_domain_CSPGs_modules_2_4 Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan (HA)-binding domain. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of aggrecan are involved in interaction with HA. Aggrecan in addition contains a second globular domain (G2) having link modules 3 and 4 which lack HA-binding activity. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and
Probab=86.87 E-value=0.42 Score=38.01 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.8
Q ss_pred cCCHHHHHhHcccCCCeEeeeCC
Q psy14896 48 LKTRNDAKLNCKSLDSDLANVND 70 (813)
Q Consensus 48 ~~~~~~a~~~C~~~~~~L~~i~~ 70 (813)
+.+|++|++.|+..||+||+..-
T Consensus 10 ~l~f~eA~~aC~~~ga~lAs~~Q 32 (96)
T cd03520 10 KFTFQEARAECRSLGAVLATTGQ 32 (96)
T ss_pred CcCHHHHHHHHHHcCCEeCCHHH
Confidence 68999999999999999998654
No 439
>PHA03281 envelope glycoprotein E; Provisional
Probab=86.81 E-value=16 Score=38.95 Aligned_cols=87 Identities=22% Similarity=0.259 Sum_probs=51.9
Q ss_pred cCccEEEeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCcccccccCCCCCCCC----------CcCCCCCCcEE
Q psy14896 349 YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF----------PEAPKAGDKVR 418 (813)
Q Consensus 349 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~~~~~~~~~~~~~~~----------~~~v~~g~~~~ 418 (813)
..+.|.|.+++..++|.|+--.....|.... ..+.|+|+..+. ..+..|...++.. +....+|+++.
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~--svfLVtVkg~~~-~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFs 372 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMY--ATFLVKLKGDEE-NHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFS 372 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCCccee--EEEEEEecCCcc-cCCCCCCccccccCceEEEeccceeEecCCCeeE
Confidence 3468999999999999999877644332111 145677765432 1122222322222 12357899998
Q ss_pred EEEEEeec--CCC---eeeEeecCC
Q psy14896 419 LECVAFGY--PVP---SYNWTRRGS 438 (813)
Q Consensus 419 l~C~~~g~--p~p---~i~W~~~~~ 438 (813)
|.-..... ..+ .|.|+.-.-
T Consensus 373 l~v~L~s~ihD~pFsleI~Wyy~p~ 397 (642)
T PHA03281 373 LAMHLQYKIHDAPFDLLLEWLYVPI 397 (642)
T ss_pred EEEEEeeeccCCCceeEEEEEEecC
Confidence 88777532 222 789987543
No 440
>cd01102 Link_Domain The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor necrosis factor-stimulated gene-6. TSG-6 has a strong anti-inflammatory effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. This group also contains the link domains of the chondroitin sulfate proteoglycan core proteins (CSPG) including aggrecan, versican, neurocan, and brevican and the link domains of the vertebrate HAPLN (HA and proteoglycan binding link) protein family. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates in which other CSPGs substitute for aggregan might contribute to the structural integrity of many different tissues. Members of
Probab=84.77 E-value=0.45 Score=37.74 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.8
Q ss_pred cCCHHHHHhHcccCCCeEeeeCC
Q psy14896 48 LKTRNDAKLNCKSLDSDLANVND 70 (813)
Q Consensus 48 ~~~~~~a~~~C~~~~~~L~~i~~ 70 (813)
+.++.+|++.|+..||+||+..-
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~Q 35 (92)
T cd01102 13 KLTFAEAALACKARGAHLATPGQ 35 (92)
T ss_pred ccCHHHHHHHHHHcCCEeCCHHH
Confidence 58999999999999999998654
No 441
>smart00445 LINK Link (Hyaluronan-binding).
Probab=84.00 E-value=0.52 Score=37.56 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.8
Q ss_pred cCCHHHHHhHcccCCCeEeeeCC
Q psy14896 48 LKTRNDAKLNCKSLDSDLANVND 70 (813)
Q Consensus 48 ~~~~~~a~~~C~~~~~~L~~i~~ 70 (813)
+.+|+||++.|+..||+||+..-
T Consensus 14 ~l~f~eA~~aC~~~ga~lAs~~Q 36 (94)
T smart00445 14 KLTFAEAREACRAQGATLATVGQ 36 (94)
T ss_pred ccCHHHHHHHHHHcCCEeCCHHH
Confidence 58999999999999999998754
No 442
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=83.55 E-value=12 Score=29.93 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=37.4
Q ss_pred eEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEE
Q psy14896 689 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES 752 (813)
Q Consensus 689 ~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 752 (813)
...|.+.+.+. .+.+.||-||..+..... ...+.+.. ...|.|+..+....|...+
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~----~~~~~~~~---~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP----GHQLFWQP---DRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCC----CCeEEeCC---CCCeeEEEEEEcCCCCEEE
Confidence 34455555544 448999999999943321 23444432 5689999999999997654
No 443
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=83.13 E-value=2.5 Score=42.71 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=17.7
Q ss_pred eEEEEEEecCCCC--CeEEEEeC
Q psy14896 689 KVRLECVAFGYPV--PSYNWTRR 709 (813)
Q Consensus 689 ~v~l~C~~~g~P~--p~i~W~k~ 709 (813)
.++|.|.|.|+=+ ..++|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 6799999999754 37899999
No 444
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=83.00 E-value=10 Score=30.20 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=39.4
Q ss_pred ccEEEEeee-ccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCCeeEEEEeecCceeeEeeee
Q psy14896 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 288 (813)
Q Consensus 210 ~~v~l~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~ 288 (813)
+.+.-+|.+ .|+|++.|.|.-+=.- ..........+...+......++.. ...|.-..+|+++...... ..++
T Consensus 21 ~v~VA~CiSa~GrPpa~ItW~t~l~G---~~etq~~~~~~GT~TV~S~y~lVPs--~~~~gk~lTCvV~h~~~~~-~~~~ 94 (98)
T cd05890 21 KMLVATCVSANGKPPSVVRWDTRLKG---EAEFQEIRNQNGTVTVISRYRLVPS--REAHKQKLTCIVNYRNDRF-TDSV 94 (98)
T ss_pred eEEEEEEEcCCCcCCcEeEEEccCCC---ceeeeeeCCCCCCEEEEEEEEEeEC--HHHcCCEeEEEEEeccccc-cccE
Confidence 447788995 7999999999744210 0000011111222222222223322 5677778999998653322 3345
Q ss_pred EEe
Q psy14896 289 QLA 291 (813)
Q Consensus 289 ~l~ 291 (813)
.|+
T Consensus 95 ~L~ 97 (98)
T cd05890 95 TLN 97 (98)
T ss_pred Eec
Confidence 444
No 445
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=82.83 E-value=1.9 Score=47.09 Aligned_cols=294 Identities=14% Similarity=0.193 Sum_probs=25.7
Q ss_pred eEEEEEeeccCCCcEEEeeccccccceeccccCCCCCceEEeeCCeEEEeCCCCCCCCce--EEEEEE--cCceeEEeec
Q psy14896 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS--YHCKAS--NKFGSIISES 560 (813)
Q Consensus 485 ~~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~--Y~C~a~--n~~g~~~s~~ 560 (813)
+.|.|.. .-...+.|.....+.... ...... ......|.|... .+ ..|. |...++ +..+......
T Consensus 3 ~~~~C~~--~~~~~y~W~~~~~~~~~~-----~~~~~~--~~~~~~l~ip~~-~L-~~G~y~~~~~Vt~~~~~~~~~~~~ 71 (440)
T PF02010_consen 3 VSLNCND--ASTVTYNWTVFSGPSNSI-----VQDMDN--SSNTPQLTIPPY-TL-PPGDYTFTLTVTASSNPGLSSTDS 71 (440)
T ss_dssp ---------------BEEEEES-TT-E-----EESTTT----SSSECEEECE-S---SCEEEEEEEEE--BCTTEEEEEE
T ss_pred ccccccc--ccceEEEEEEEecCCcCc-----cccccc--cCCceEEEeCcc-cC-CCCCEEEEEEEEEECCCCceEEEE
Confidence 5667832 234678897754221000 000000 122356777763 33 3454 556666 4444444556
Q ss_pred EEEEEeecccccccCC--CceeccCCCceEEeCCCCCCC-------ccEEEEccCCCCCc-----ccCCCeEEEeeCccE
Q psy14896 561 VQLAFGFIGEFNLKRA--PEIGNQNWGKAMFCDPPTNYP-------GVNYYWARDYFPNF-----VEEDKRVFVSYDGAL 626 (813)
Q Consensus 561 ~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p-------~~~v~W~k~~~~~~-----~~~~~~~~~~~~~~L 626 (813)
+.|.|...|....... ......+..+.|.... ..+| ...+.|.-...... ............+.|
T Consensus 72 ~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~-S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l 150 (440)
T PF02010_consen 72 VTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQ-SYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSL 150 (440)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred EEEEEeeccceeEEcCCccceeecCceEEEeeEE-EecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEE
Confidence 6777766553322211 1222223456666543 2233 35788876543211 000011112233457
Q ss_pred EEEeec--ccCCeeEEEEEEeeecCccccCceeeEEEccCC-CccccccCCCCCCCCCcCCCCCCeEEEEEEecCCC---
Q psy14896 627 YFSALE--QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS-NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP--- 700 (813)
Q Consensus 627 ~i~~~~--~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p-~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P--- 700 (813)
.|..-. ......++.++....+.... ....+.+...+ ....+..+ ......+..++.+.|...+.+.+
T Consensus 151 ~i~~~~l~~~~~y~f~ltv~k~~r~s~s--~~~~v~v~~~~~p~v~I~~~----~n~~~~vn~~~~l~L~~~~~~~~~~~ 224 (440)
T PF02010_consen 151 TIPASTLSPGSTYTFTLTVSKGSRSSSS--ASQTVTVVSGDPPTVSISCV----SNCKGKVNPSERLVLQASCSSCDSDS 224 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEhHHcCCCceEEEEEEEEeCCCCcee--eEEEEEeccCCCCceeEccc----cccccccCCCCCEEEEEEEeCCCCcC
Confidence 775333 33333444444443331222 22333333221 11111111 11112367788887776666432
Q ss_pred -CCeEEEEe--------CCcccCCC--c-eeeecceEEEECCCCCCCCEEEEE--EEEcCCCce-EEEEEEEEEcCCcc-
Q psy14896 701 -VPSYNWTR--------RGSPLPRN--A-YFENFNRILTIPNVKVEDQGEYIC--RASNDRSAL-ESSVTISIQAEPNF- 764 (813)
Q Consensus 701 -~p~i~W~k--------~g~~l~~~--~-~~~~~~~~L~i~~v~~~d~G~Y~C--~a~N~~G~~-~~~~~l~V~~~P~~- 764 (813)
...+.|.. ....+... . ........|.|..-..+..+.|.. .|.+..+.. .+++.+.+..||..
T Consensus 225 ~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP~~g 304 (440)
T PF02010_consen 225 SNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNAPPSGG 304 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35799987 11122111 1 111224568887666666667765 555554443 77888888888863
Q ss_pred --cccCCceeecCCCeEEEEEEEcccC--CceEEEEE
Q psy14896 765 --TIPLTDKHMDNQADLTWTCEAFGVP--DVTYSWFR 797 (813)
Q Consensus 765 --~~~~~~~~~~~g~~~~l~C~~~g~p--~~~v~W~k 797 (813)
...|..- ......+++.|.-..++ +-.+.++.
T Consensus 305 ~c~v~P~~G-~al~T~Ft~~c~~~~d~~~pL~Y~f~~ 340 (440)
T PF02010_consen 305 SCSVSPSSG-YALETTFTITCSGWTDDDQPLTYQFYY 340 (440)
T ss_dssp -------------------------------------
T ss_pred ccccccccc-ccccccccccccccccccccccccccc
Confidence 3333221 33346678999764333 34677766
No 446
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=82.47 E-value=5.4 Score=31.85 Aligned_cols=62 Identities=19% Similarity=0.400 Sum_probs=42.3
Q ss_pred cCCCCCCeEEEEEEecC-----CCCCeEEEEeCCcccCCCcee--eecceEEEECCCCCCCCEEEEEEE
Q psy14896 682 EAPKAGDKVRLECVAFG-----YPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVEDQGEYICRA 743 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g-----~P~p~i~W~k~g~~l~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a 743 (813)
..+..|++++..|.+.- .+...|.|..|+..++.+.+. ....+.+++.+.....+-.|.|..
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 35678999999999862 245689999999977766533 333467888888777767787774
No 447
>cd03518 Link_domain_HAPLN_module_1 Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.
Probab=81.44 E-value=0.71 Score=36.74 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred cCCHHHHHhHcccCCCeEeeeCC
Q psy14896 48 LKTRNDAKLNCKSLDSDLANVND 70 (813)
Q Consensus 48 ~~~~~~a~~~C~~~~~~L~~i~~ 70 (813)
+.||.+|++.|+..||.||+..-
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~Q 35 (95)
T cd03518 13 NLNFHEAQQACEEQDATLASFEQ 35 (95)
T ss_pred ccCHHHHHHHHHHcCCeeCCHHH
Confidence 58999999999999999998654
No 448
>PHA03052 Hypothetical protein; Provisional
Probab=81.37 E-value=3.7 Score=30.03 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=29.9
Q ss_pred CceeecCCCeEEEEEEEc-cc--CCceEEEEECCEeccccc
Q psy14896 769 TDKHMDNQADLTWTCEAF-GV--PDVTYSWFRNGELGHQMT 806 (813)
Q Consensus 769 ~~~~~~~g~~~~l~C~~~-g~--p~~~v~W~k~g~~l~~~~ 806 (813)
..+.+.-|..+++.|.+. |. ..+.|.|.-||..+..++
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d 45 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDD 45 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccc
Confidence 556788899999999996 33 356799999999994443
No 449
>PHA03283 envelope glycoprotein E; Provisional
Probab=81.32 E-value=9.3 Score=40.66 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=53.9
Q ss_pred ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCccc---------------------ccCCceeecCCCeEEE
Q psy14896 723 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFT---------------------IPLTDKHMDNQADLTW 781 (813)
Q Consensus 723 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~~---------------------~~~~~~~~~~g~~~~l 781 (813)
.+.|.|.+++.+++|.|+--..|+.|.....+.|+|+.++.-. .+-.......|+++.+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l 212 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL 212 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence 5679999999999999999999988877778888998732211 1112234568998887
Q ss_pred EEEEcc---cC--CceEEEEE
Q psy14896 782 TCEAFG---VP--DVTYSWFR 797 (813)
Q Consensus 782 ~C~~~g---~p--~~~v~W~k 797 (813)
.-.... ++ ..+|.||+
T Consensus 213 si~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 213 SVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred eEEEeeccCCCCceEEEEEEE
Confidence 666543 22 35799986
No 450
>KOG0200|consensus
Probab=81.12 E-value=16 Score=41.75 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=69.9
Q ss_pred eCccEEEEeecccCCeeEEEEEEeeecCccccCceeeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCC
Q psy14896 622 YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 701 (813)
Q Consensus 622 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~ 701 (813)
..+.+.+..+...|.|.|+|.+.| . . ..+.+. ..+ ........ .......+..+....+ +...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~--~--~---~~~~~~--~~~-~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~ 75 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN--I--N---LIISLD--DIV-IHRPILLA--GENANPNTVVTVGVPL---AFSIPQ 75 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec--C--c---eeeEee--ccc-Cccccccc--CCCCCcceeeccccee---eeecCC
Confidence 456788999999999999999999 1 1 112222 111 11100111 1111233445555666 344446
Q ss_pred CeEEEEeCCccc-----CCC--------------ceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEE
Q psy14896 702 PSYNWTRRGSPL-----PRN--------------AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759 (813)
Q Consensus 702 p~i~W~k~g~~l-----~~~--------------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 759 (813)
+.+.|.+..... ... .........+.+.++...+.|.|.|.+.+..+.......+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (609)
T KOG0200|consen 76 PFIKWGTNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRTVGDGPNKAFLEVS 152 (609)
T ss_pred CcceeeeeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCcccccccceEEecc
Confidence 788888765321 100 0011234468999999999999999998855555444444443
No 451
>cd03515 Link_domain_TSG_6_like This is the extracellular link domain of the type found in human TSG-6. The link domain is a hyaluronan (HA)-binding domain. TSG-6 is the protein product of tumor necrosis factor-stimulated gene-6. TSG-6 is up-regulated in inflammatory lesions and in the ovary during ovulation. It has a strong anti-inflammatory and chondroprotective effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. Also included in this group are the stabilins: stabilin-1 (FEEL-1, CLEVER-1) and stabilin-2 (FEEL-2). Stabilin-2 functions as the major liver and lymph node-scavenging receptor for HA and related glycosaminoglycans. Stabilin-2 is a scavenger receptor with a broad range of ligands including advanced glycation end (AGE) products, acetylated low density lipoprotein and procollagen peptides. In contrast, stabilin-1 does not bind HA, but binds acetylated low density lipoprotein and AGEs with lower affinity. As AGEs accum
Probab=80.66 E-value=0.7 Score=36.62 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.6
Q ss_pred cCCHHHHHhHcccCCCeEeeeCC
Q psy14896 48 LKTRNDAKLNCKSLDSDLANVND 70 (813)
Q Consensus 48 ~~~~~~a~~~C~~~~~~L~~i~~ 70 (813)
+.|+.||++.|+..||.||+..-
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~Q 35 (93)
T cd03515 13 KLTYTEAKAACEAEGAHLATYSQ 35 (93)
T ss_pred ccCHHHHHHHHHHcCCccCCHHH
Confidence 48999999999999999998754
No 452
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=79.63 E-value=5.8 Score=31.56 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=37.5
Q ss_pred eEEeCCCCCCCccEEEEccCCCCCcccCCCeEEEeeCcc------EEEEeecccCCeeEEEEEEee
Q psy14896 587 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA------LYFSALEQIDAGNYSCNVQSK 646 (813)
Q Consensus 587 ~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~------L~i~~~~~~d~G~Y~C~a~n~ 646 (813)
.-.|.+..|.|++.|+|.-+-.. ..........+|+ +.+......|.-..+|++.+.
T Consensus 24 VA~CiSa~GrPpa~ItW~t~l~G---~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 24 VATCVSANGKPPSVVRWDTRLKG---EAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEcCCCcCCcEeEEEccCCC---ceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence 46799779999999999854110 0111222234554 445566678888999999876
No 453
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=79.60 E-value=9.3 Score=41.01 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=0.0
Q ss_pred eeCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEee
Q psy14896 526 LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF 567 (813)
Q Consensus 526 ~~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~ 567 (813)
...+.|.|.++ +.+|+|.|+-...+..+......+.|.|..
T Consensus 86 ~~~~~l~i~~a-~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 86 FNKGGLSILNA-TEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp ------------------------------------------
T ss_pred ecCCceEEecc-ccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 34578999997 999999999999988877666666666654
No 454
>cd03521 Link_domain_KIAA0527_like Link_domain_KIAA0527_like; this domain is found in the human protein KIAA0527. Sequence-wise, it is highly similar to the link domain. The link domain is a hyaluronan-binding (HA) domain. KIAA0527 contains a single link module. The KIAA0527 gene was originally cloned from human brain tissue.
Probab=79.36 E-value=1.1 Score=34.81 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.5
Q ss_pred cCCHHHHHhHcccCCCeEeeeCC
Q psy14896 48 LKTRNDAKLNCKSLDSDLANVND 70 (813)
Q Consensus 48 ~~~~~~a~~~C~~~~~~L~~i~~ 70 (813)
+.++.+|++.|++.||+||+..-
T Consensus 13 ~l~f~eA~~AC~~~gA~lAs~~Q 35 (95)
T cd03521 13 GLGLRAARQSCASLGARLASAAE 35 (95)
T ss_pred ccCHHHHHHHHHHcCCEeccHHH
Confidence 57899999999999999998653
No 455
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=78.33 E-value=4.8 Score=40.74 Aligned_cols=22 Identities=27% Similarity=0.727 Sum_probs=19.1
Q ss_pred CeEEEecCCCCCCc-ceEEEeec
Q psy14896 312 GKAMFCDPPTNYPG-VNYYWARD 333 (813)
Q Consensus 312 ~~~l~C~~~~~~p~-~~v~W~k~ 333 (813)
.++|.|.+.+-+|. ..++|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 46999998777787 79999999
No 456
>cd03517 Link_domain_CSPGs_modules_1_3 Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan (HA)-binding domain. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of aggrecan are involved in interaction with HA. In addition, aggrecan contains a second globular domain (G2) which contains link modules 3 and 4. G2 appears to lack HA-binding activity. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues.
Probab=77.06 E-value=1 Score=35.94 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.1
Q ss_pred cCCHHHHHhHcccCCCeEeeeCCH
Q psy14896 48 LKTRNDAKLNCKSLDSDLANVNDA 71 (813)
Q Consensus 48 ~~~~~~a~~~C~~~~~~L~~i~~~ 71 (813)
+.++.+|++.|+..||.||+....
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~QL 36 (95)
T cd03517 13 ALTFPRAQRACLDISAQIATPEQL 36 (95)
T ss_pred eECHHHHHHHHHHcCCEeCCHHHH
Confidence 478999999999999999987653
No 457
>PF00193 Xlink: Extracellular link domain; InterPro: IPR000538 The link domain [] is a hyaluronan(HA)-binding region found in proteins of vertebrates that are involved in the assembly of extracellular matrix, cell adhesion, and migration. The structure has been shown [] to consist of two alpha helices and two antiparallel beta sheets arranged around a large hydrophobic core similar to that of C-type lectin. This domain contains four conserved cysteines involved in two disulphide bonds. The link domain has also been termed HABM [] (HA binding module) and PTR [] (proteoglycan tandem repeat). Proteins with such a domain include the proteoglycans aggrecan, brevican, neurocan and versican, which are expressed in the CNS; the cartilage link protein (LP), a proteoglycan that together with HA and aggrecan forms multimolecular aggregates; Tumour necrosis factor-inducible protein TSG-6, which may be involved in cell-cell and cell-matrix interactions during inflammation and tumourgenesis; and CD44 antigen, the main cell surface receptor for HA.; GO: 0005540 hyaluronic acid binding, 0007155 cell adhesion; PDB: 1O7B_T 2PF5_C 1O7C_T 2JCQ_A 2JCR_A 2JCP_A 1UUH_B 1POZ_A 2I83_A.
Probab=76.77 E-value=1.1 Score=36.00 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=17.7
Q ss_pred cCCHHHHHhHcccCCCeEeeeCC
Q psy14896 48 LKTRNDAKLNCKSLDSDLANVND 70 (813)
Q Consensus 48 ~~~~~~a~~~C~~~~~~L~~i~~ 70 (813)
+.+|.+|++.|+..|++||+...
T Consensus 13 ~l~f~eA~~~C~~~ga~LAs~~q 35 (92)
T PF00193_consen 13 KLTFTEAQQACRALGARLASPEQ 35 (92)
T ss_dssp SB-HHHHHHHHHHTTCBE--HHH
T ss_pred cCcHHHHHHHHHHcCCeeCCHHH
Confidence 47999999999999999997654
No 458
>PHA03189 UL14 tegument protein; Provisional
Probab=76.35 E-value=16 Score=35.77 Aligned_cols=77 Identities=23% Similarity=0.335 Sum_probs=43.3
Q ss_pred cCCCCCCeEEEEEEec--CCCCCeEEEE---------------eCCcccCCCce---------eee--cceEEEEC-CCC
Q psy14896 682 EAPKAGDKVRLECVAF--GYPVPSYNWT---------------RRGSPLPRNAY---------FEN--FNRILTIP-NVK 732 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~--g~P~p~i~W~---------------k~g~~l~~~~~---------~~~--~~~~L~i~-~v~ 732 (813)
..+..|+.+++.|.+- ..|...|.=. ..|..+..+.. ++. ..+.|++. ++.
T Consensus 62 ~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF~v~ 141 (348)
T PHA03189 62 LLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTFRVS 141 (348)
T ss_pred cccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEEEEE
Confidence 5678899999999986 3444333211 12333322211 111 12234332 566
Q ss_pred CCCCEEEEEEEEcCC-CceEEEEEEEE
Q psy14896 733 VEDQGEYICRASNDR-SALESSVTISI 758 (813)
Q Consensus 733 ~~d~G~Y~C~a~N~~-G~~~~~~~l~V 758 (813)
.+-+|.|.|+..|.. |-....+.|.-
T Consensus 142 t~taG~Y~CvLrN~tHglv~~rf~ivt 168 (348)
T PHA03189 142 TSTAGMYECVLRNETHGLVLQRFVIVT 168 (348)
T ss_pred ecccceEEEEeccccceeeeEEeeeee
Confidence 778999999999974 55555554443
No 459
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=74.70 E-value=42 Score=31.66 Aligned_cols=93 Identities=20% Similarity=0.364 Sum_probs=52.5
Q ss_pred CeEEEEeCCcccCCCcee----------eecceEEEECCC-CCCCCEEEEEEEEcCCCce-E----EEEEEEEEcCCccc
Q psy14896 702 PSYNWTRRGSPLPRNAYF----------ENFNRILTIPNV-KVEDQGEYICRASNDRSAL-E----SSVTISIQAEPNFT 765 (813)
Q Consensus 702 p~i~W~k~g~~l~~~~~~----------~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~G~~-~----~~~~l~V~~~P~~~ 765 (813)
..++|+.||.++...... ....++|++... ..+..=+.+|.+.=.-++. + ++..=.|..+|.+.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs 86 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS 86 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence 379999999988644211 112346777333 3334458999987332222 2 22333345556554
Q ss_pred ccCCceeecCCCeEEEEEEEcccC--CceEEEEECCEec
Q psy14896 766 IPLTDKHMDNQADLTWTCEAFGVP--DVTYSWFRNGELG 802 (813)
Q Consensus 766 ~~~~~~~~~~g~~~~l~C~~~g~p--~~~v~W~k~g~~l 802 (813)
. .+..|. ..|.+.--| ...+.|+-+|.+.
T Consensus 87 v-----~F~~g~---AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 87 V-----RFEDGY---AVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred E-----EecCCE---EEEEcceeeCCCeEEEEEECCccC
Confidence 3 333333 346655444 3789999888765
No 460
>PHA03282 envelope glycoprotein E; Provisional
Probab=74.33 E-value=19 Score=37.77 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=28.7
Q ss_pred cceEEEECCCCCCCCEEEEEEEEcCCC--ceEEEEEEEEE
Q psy14896 722 FNRILTIPNVKVEDQGEYICRASNDRS--ALESSVTISIQ 759 (813)
Q Consensus 722 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G--~~~~~~~l~V~ 759 (813)
.+.+|.|.++..+|+|.|+-.+...-. ...+.+.|.|.
T Consensus 122 ~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 122 VNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred ecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 366899999999999999999754322 24556777776
No 461
>PHA03052 Hypothetical protein; Provisional
Probab=73.43 E-value=17 Score=26.70 Aligned_cols=34 Identities=15% Similarity=0.385 Sum_probs=24.5
Q ss_pred CceeecCCCccccccEEEEeeec-cC--CCCeEEEeeccccc
Q psy14896 197 TDVVFDLSKRSILNDITLSCYAG-GY--PNPSYEWFKEDYVQ 235 (813)
Q Consensus 197 ~~~~v~~g~~~~g~~v~l~C~~~-g~--P~p~v~W~k~g~~l 235 (813)
..+.+..| ..++|.|+|. |. ..+.|.|.-|+..+
T Consensus 5 ~~i~~slG-----s~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLG-----SNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEcc-----CCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 44555566 5599999994 43 35689999999765
No 462
>KOG4297|consensus
Probab=72.79 E-value=11 Score=33.40 Aligned_cols=94 Identities=19% Similarity=0.206 Sum_probs=59.7
Q ss_pred CCeEEEEecCCcCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHHhhhcCCCCceEEEEeccCCCCCeEEcCCCCCCcccc
Q psy14896 37 RDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDA 116 (813)
Q Consensus 37 ~~~Cy~~~~~~~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~~~~~~~~~~~w~g~~~~~~~~~~~W~dgs~~~~~~~ 116 (813)
+..|+..+... .+|..+...|...+++|+.+++..+..|+..... ......|.+.........+.|.++..+..
T Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 171 (207)
T KOG4297|consen 98 NCTCYTSFEWT-DGWSTTGTGCGGQGANLVGVLSVQENNFITSNFR--LFLGCLWLGGDSSFYFTYPTWGDGTTYSN--- 171 (207)
T ss_pred cccccCchhhc-cCHHHHHHHHHHhCCCcCeeCCHHHHHHHHHhHH--heeeeEEecCCcccccccccccCCCCccc---
Confidence 34566555542 4899999999999999999999999999986510 12234455544444445677777776554
Q ss_pred ccCCCCCC-cccCCeEEEEee
Q psy14896 117 AFLPEPAD-NVQRDYLAYSFS 136 (813)
Q Consensus 117 ~~~~~p~~-~~~~~c~~~~~~ 136 (813)
|....+.. .....|..+...
T Consensus 172 ~~~~~~~~~~~~~~C~~~~~~ 192 (207)
T KOG4297|consen 172 WALGDPNPPGDDENCLSLSTS 192 (207)
T ss_pred ccccccCCCCCCCceEEEECC
Confidence 22222211 235677776544
No 463
>PHA03286 envelope glycoprotein E; Provisional
Probab=68.36 E-value=35 Score=35.76 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=52.2
Q ss_pred ceEEEECCCCCCCCEEEEEEEEcCCCceE-EEEEEEEEc-----CCccc--c------------cCCceeecCCCeEEEE
Q psy14896 723 NRILTIPNVKVEDQGEYICRASNDRSALE-SSVTISIQA-----EPNFT--I------------PLTDKHMDNQADLTWT 782 (813)
Q Consensus 723 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~~-----~P~~~--~------------~~~~~~~~~g~~~~l~ 782 (813)
.+.|.|.+++..++|.|+--..|+-|... ..+.|.|.+ +|.+. . .........|+++.+.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 46799999999999999999999887654 466777842 22221 1 2333456689988777
Q ss_pred EEEc-----ccCCceEEEEEC
Q psy14896 783 CEAF-----GVPDVTYSWFRN 798 (813)
Q Consensus 783 C~~~-----g~p~~~v~W~k~ 798 (813)
-... +.=..+|.||+=
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEEeecccCCCceEEEEEEEe
Confidence 6654 222457999863
No 464
>cd03516 Link_domain_CD44_like This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding domain of CD44 is an extended domain comprised of a single link module flanked with N-and C- extensions. These extensions are essential for folding and for functional activity. This group also contains the cell surface retention sequence (CRS) binding protein-1 (CRSBP-1) and lymph vessel endothelial receptor-1 (LYVE-1). CRSBP-1 is a cell surface binding protein for the CRS motif of PDGF-BB (platelet-derived growth factor-BB) and is responsible for the cell surface retention of PDGF-BB in SSV-transformed cells. CRSBP-1 may play a role in autocrine regulation of cell growth mediated by CRS containing growth regulators. LYVE-1 is preferentially expressed on the lymphatic endothelium and is used as a molecular marke
Probab=66.11 E-value=2.9 Score=36.17 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred cCCHHHHHhHcccCCCeEeeeCC
Q psy14896 48 LKTRNDAKLNCKSLDSDLANVND 70 (813)
Q Consensus 48 ~~~~~~a~~~C~~~~~~L~~i~~ 70 (813)
+.+|.+|++.|+..||.||+..-
T Consensus 18 ~lnf~eA~~aC~~~ga~lAs~~Q 40 (144)
T cd03516 18 SLNFTEAKEACRALGLTLASKAQ 40 (144)
T ss_pred cCCHHHHHHHHHHcCCeeCCHHH
Confidence 48999999999999999998654
No 465
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=65.58 E-value=13 Score=29.69 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=30.4
Q ss_pred CCceeecCCCeEEEEEEEcc-----cCCceEEEEECCEeccccccccc
Q psy14896 768 LTDKHMDNQADLTWTCEAFG-----VPDVTYSWFRNGELGHQMTDLLL 810 (813)
Q Consensus 768 ~~~~~~~~g~~~~l~C~~~g-----~p~~~v~W~k~g~~l~~~~~~~i 810 (813)
+....+..|++++..|.+.. .+...+.|..|+..|..+....|
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i 57 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI 57 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee
Confidence 44556789999999999962 24567999999997776665444
No 466
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=62.04 E-value=70 Score=24.53 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=39.8
Q ss_pred CCCCeEEEEEEecC-CCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEE--EEcCCCceEEEEEEEE
Q psy14896 685 KAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICR--ASNDRSALESSVTISI 758 (813)
Q Consensus 685 ~~G~~v~l~C~~~g-~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~--a~N~~G~~~~~~~l~V 758 (813)
..|..+.|.....+ .....+.|...+...... ... .......|.|+.. +.|..|+.+..+.+.|
T Consensus 12 ~~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~-----~~~-----~~~y~~~G~y~v~l~v~n~~g~~~~~~~i~v 78 (79)
T smart00089 12 VAGESVTFTATSSDDGSIVSYTWDFGDGTSSTG-----PTV-----THTYTKPGTYTVTLTVTNAVGSASATVTVVV 78 (79)
T ss_pred CCCCEEEEEEECCCCCCeEEEEEEeCCCCccCC-----CCE-----EEEeCCCcEEEEEEEEEcCCCcEEEEEEEEE
Confidence 47889999998875 334588897754422111 111 1123467888755 5688887777777665
No 467
>PHA03240 envelope glycoprotein M; Provisional
Probab=61.28 E-value=11 Score=34.60 Aligned_cols=78 Identities=19% Similarity=0.309 Sum_probs=48.7
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEe-------C-Cc---ccC------CC-------------ceeeecceEEEECCC
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTR-------R-GS---PLP------RN-------------AYFENFNRILTIPNV 731 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k-------~-g~---~l~------~~-------------~~~~~~~~~L~i~~v 731 (813)
+.+.+|++|+|.-.---.|.-.+.||+ . |. +|- .+ -.++-.+++|.|-++
T Consensus 33 vt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~v 112 (258)
T PHA03240 33 HTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAHL 112 (258)
T ss_pred cccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEEE
Confidence 567889999998633223556899998 1 22 110 00 123445789999999
Q ss_pred CCCCCEEEEEEEEcCCCce----EEEEEEEEE
Q psy14896 732 KVEDQGEYICRASNDRSAL----ESSVTISIQ 759 (813)
Q Consensus 732 ~~~d~G~Y~C~a~N~~G~~----~~~~~l~V~ 759 (813)
..+|.|+|.-.-.-..|.. .+=++|.|.
T Consensus 113 n~sd~~nYcr~k~~~~g~~e~pt~sC~~l~~r 144 (258)
T PHA03240 113 NLSDAGEYCRKKCPPKGDCEFPTMSCFRLILR 144 (258)
T ss_pred eecCcchhhhccCCCCCCcCCCcceeeeEeee
Confidence 9999999954443334543 224577773
No 468
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=61.08 E-value=66 Score=25.79 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=45.1
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeec-ceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEc
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF-NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 760 (813)
..|..|+++.++|..+-.-+-.+.|.-. |.......+. =..+.|.+++. | ..-.|.+.=.-.+..+++.|+|..
T Consensus 13 ~vV~~G~Sv~VNCStsC~~p~~~GLET~---L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~~ItVY~ 87 (91)
T PF03921_consen 13 PVVPPGGSVWVNCSTSCPQPEKIGLETS---LSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASANITVYK 87 (91)
T ss_dssp EEEETTEEEEEEEEESSSS-SEEEEESS---SEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEEEEEEEB
T ss_pred cEECCCCCEEEEEcCCCCCCCcceEEEe---cCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEEeeEEeC
Confidence 4567899999999986322225566532 1111100111 13577888886 5 577798874323567899999998
Q ss_pred CCc
Q psy14896 761 EPN 763 (813)
Q Consensus 761 ~P~ 763 (813)
+|+
T Consensus 88 ~Pe 90 (91)
T PF03921_consen 88 PPE 90 (91)
T ss_dssp --S
T ss_pred CCC
Confidence 885
No 469
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=60.68 E-value=3e+02 Score=31.38 Aligned_cols=198 Identities=17% Similarity=0.199 Sum_probs=112.1
Q ss_pred ceeccCCCceEEeCCCCCCCccEEE-Ecc-CCCCCcccCCCeEEEeeCccEEEEeecccCCeeEEEEEEe--eecCcc-c
Q psy14896 578 EIGNQNWGKAMFCDPPTNYPGVNYY-WAR-DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS--KVSDTG-R 652 (813)
Q Consensus 578 ~~~~~g~~~~l~C~~~~~~p~~~v~-W~k-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n--~~g~~~-~ 652 (813)
.....|+.+.+.+.+..|. ...++ |.+ +|.. +. ......+..+. ..+.-+|.|+..+.- ...... .
T Consensus 396 ~~~lvG~~i~i~v~a~gg~-~~lY~f~ik~ng~~--ve---~~~Y~~~~~~~---f~P~~~G~Y~IeV~vKdk~S~~~yD 466 (667)
T PRK14081 396 KHILKGEEIKIRVIAEGGT-NLRYSFIIKKDGKE--EE---KIDYGKNNWVN---FIPEEKGNYELEVRVKDKYSDKEYD 466 (667)
T ss_pred CceEeCCeEEEEEEecCCC-eEEEEEEEEECCEE--EE---EeecccccEEE---EEECCCeeEEEEEEEecccCchhcc
Confidence 4556799999999986554 33332 333 4421 11 01111122233 456889999987753 322211 1
Q ss_pred cCceeeEEEcc-CCC-ccccccCCCCCCCCCcCCCCCCeEEEEEEecCCCCCeEEE--EeCCcccCCCceeeecceEEEE
Q psy14896 653 NGPFFPLKVFP-HSN-FQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNW--TRRGSPLPRNAYFENFNRILTI 728 (813)
Q Consensus 653 ~~~~~~l~v~~-~p~-~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W--~k~g~~l~~~~~~~~~~~~L~i 728 (813)
....+.+.|.. .|. +..+..|.. .....|+.++++|.++|.-...+.. +.||.......... ...+++
T Consensus 467 ~~k~v~l~V~e~~P~~i~~il~~~~------~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t~Ys~--~~~ysf 538 (667)
T PRK14081 467 AHTIVYIKVHEYIPAEIDYILLPVK------EYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEETDYIK--NKKYKF 538 (667)
T ss_pred cceEEEEEEeccCceeeeeEEeccc------ccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEeeccc--cceEEE
Confidence 13446677775 333 222222211 3457899999999999754443333 34565543322222 223333
Q ss_pred CCCCCCCCEEEEEEEE--cCCC----ceEEEEEEEEEcCCccc---ccCCceeecCCCeEEEEEEEcccCCceEEE
Q psy14896 729 PNVKVEDQGEYICRAS--NDRS----ALESSVTISIQAEPNFT---IPLTDKHMDNQADLTWTCEAFGVPDVTYSW 795 (813)
Q Consensus 729 ~~v~~~d~G~Y~C~a~--N~~G----~~~~~~~l~V~~~P~~~---~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W 795 (813)
. +--+|.|+..+- |... .+...+.+.|..+..+. .......+..|+.++|+....|--..-.+.
T Consensus 539 ~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~~~~~gg~~v~Yef 611 (667)
T PRK14081 539 I---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNEEVTFSVKSEGGKDVCYEF 611 (667)
T ss_pred e---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCCeEEEEEEccCCCcEEEEE
Confidence 2 667899998774 5443 24568888998774443 234556677889999999888766665444
No 470
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=60.61 E-value=20 Score=26.10 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=39.9
Q ss_pred EEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEEEcCCcc
Q psy14896 691 RLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF 764 (813)
Q Consensus 691 ~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P~~ 764 (813)
+|+|..... ..+.||-||..|-+- ...+|++.++ .++|+|+-..+ ...++.+.-...|+.
T Consensus 2 tltC~s~~s--LPiswYcN~TRLlRl-----t~~Tlt~~~l----tcNFtCV~qSG---h~hSiWItW~~qPVL 61 (71)
T PF11049_consen 2 TLTCPSNAS--LPISWYCNGTRLLRL-----TQQTLTVVTL----TCNFTCVGQSG---HRHSIWITWYAQPVL 61 (71)
T ss_pred ceecCCCCC--CcccEEECCceeeee-----cCCeEeeeee----eEEeeecCCCC---CCceEEEEEcCchhh
Confidence 578876543 348999999877432 1345666444 68999986543 355777777777764
No 471
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=54.97 E-value=6.1 Score=34.98 Aligned_cols=14 Identities=29% Similarity=0.767 Sum_probs=12.8
Q ss_pred CCchhhhccCCeEE
Q psy14896 28 RCPQHWVQYRDSCY 41 (813)
Q Consensus 28 ~Cp~~w~~~~~~Cy 41 (813)
.||+|+..-.++|-
T Consensus 112 sCPdGFv~khk~C~ 125 (186)
T PF06387_consen 112 SCPDGFVLKHKRCT 125 (186)
T ss_pred cCCCcceeeccccc
Confidence 79999999999994
No 472
>KOG0200|consensus
Probab=54.75 E-value=90 Score=35.71 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=56.3
Q ss_pred eCCeEEEeCCCCCCCCceEEEEEEcCceeEEeecEEEEEeeccc---cc-ccCCCceeccCCCceEEeCCCCCCCccEEE
Q psy14896 527 SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE---FN-LKRAPEIGNQNWGKAMFCDPPTNYPGVNYY 602 (813)
Q Consensus 527 ~~~~l~i~~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~v~~~p~---~~-~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~ 602 (813)
....+.+..+ ...+.|.|+|.+.| . .....+. ..... .. ..........+.+..+ + ...+.+.+.
T Consensus 11 ~~~~~~~~~~-~~~~~~~y~~~~~~--~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~ 79 (609)
T KOG0200|consen 11 NHWFLIIDSV-VPGDKGFYTCLVSN--I---NLIISLD-DIVIHRPILLAGENANPNTVVTVGVPL---A-FSIPQPFIK 79 (609)
T ss_pred ccceEEEEEE-EecCCccEEEEEec--C---ceeeEee-cccCcccccccCCCCCcceeeccccee---e-eecCCCcce
Confidence 3456666665 88999999999999 1 1111222 11111 11 1122223344555555 2 222366677
Q ss_pred EccCCCCC---cccCCC-------------eEEEeeCccEEEEeecccCCeeEEEEEEe
Q psy14896 603 WARDYFPN---FVEEDK-------------RVFVSYDGALYFSALEQIDAGNYSCNVQS 645 (813)
Q Consensus 603 W~k~~~~~---~~~~~~-------------~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 645 (813)
|.+...-. ...... +........+.+.+++..+.|.|.|...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 138 (609)
T KOG0200|consen 80 WGTNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGR 138 (609)
T ss_pred eeeeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCC
Confidence 77654210 000000 00000112378899999999999999876
No 473
>PHA03281 envelope glycoprotein E; Provisional
Probab=54.20 E-value=77 Score=34.16 Aligned_cols=75 Identities=9% Similarity=0.233 Sum_probs=51.2
Q ss_pred ceEEEECCCCCCCCEEEEEEEEcCCCceEE-EEEEEEEcCC--cccc---------------cCCceeecCCCeEEEEEE
Q psy14896 723 NRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEP--NFTI---------------PLTDKHMDNQADLTWTCE 784 (813)
Q Consensus 723 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~~P--~~~~---------------~~~~~~~~~g~~~~l~C~ 784 (813)
.+.|.|.+++..++|.|+--.....|.... .+.|+|+..+ +++. .-.......|+++.+.-.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 458999999999999999988877775444 7778887633 1111 112234568888877766
Q ss_pred Eccc----C-CceEEEEE
Q psy14896 785 AFGV----P-DVTYSWFR 797 (813)
Q Consensus 785 ~~g~----p-~~~v~W~k 797 (813)
.... | ..+|.||+
T Consensus 377 L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EeeeccCCCceeEEEEEE
Confidence 6432 1 35799986
No 474
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=53.50 E-value=89 Score=23.24 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=35.4
Q ss_pred cCCCCCCeEEEEEEecCCCCCeEEEEeCC-cccCCCceeeecceEEEECCCCCCCCEEEEEEE--EcCCCceE
Q psy14896 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRG-SPLPRNAYFENFNRILTIPNVKVEDQGEYICRA--SNDRSALE 751 (813)
Q Consensus 682 ~~~~~G~~v~l~C~~~g~P~p~i~W~k~g-~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a--~N~~G~~~ 751 (813)
..+..|+.++|...........+.|..++ .....+. .-+.+ ....|.|...+ .|..|...
T Consensus 6 ~~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~-----~~t~t-----y~~~G~y~V~ltv~n~~g~~t 68 (69)
T PF00801_consen 6 TYVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGS-----SVTHT-----YSSPGTYTVTLTVTNGVGSAT 68 (69)
T ss_dssp SCEBTTSEEEEEETTTTSSECEEEEE-SSESEEECSS-----EEEEE-----ESSSEEEEEEEEEEETTSEEE
T ss_pred CEEcCCCEEEEEEEccCCCCeEEEEEECCCCccccCC-----CEEEE-----cCCCeEEEEEEEEEECCCCcC
Confidence 45678999999998833334589999988 2211111 11222 23479887654 57776543
No 475
>PHA03189 UL14 tegument protein; Provisional
Probab=49.74 E-value=2.8e+02 Score=27.71 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=16.7
Q ss_pred CcCCCCCCcEEEEEEEeecCCC
Q psy14896 408 PEAPKAGDKVRLECVAFGYPVP 429 (813)
Q Consensus 408 ~~~v~~g~~~~l~C~~~g~p~p 429 (813)
+.-+.+|+.+++.|.+.....|
T Consensus 61 P~l~pyGdrvtVpC~fp~H~WP 82 (348)
T PHA03189 61 PLLVPYGDRVTVPCTFPTHDWP 82 (348)
T ss_pred ccccCCCceeeeeeeecCCCCc
Confidence 3567899999999998655444
No 476
>PHA03240 envelope glycoprotein M; Provisional
Probab=43.25 E-value=49 Score=30.67 Aligned_cols=72 Identities=14% Similarity=0.072 Sum_probs=40.6
Q ss_pred CCceeccCCCceEEeCCCCCCCccEEEEcc-------C-CC---CCccc---------------CCCeEE-EeeCccEEE
Q psy14896 576 APEIGNQNWGKAMFCDPPTNYPGVNYYWAR-------D-YF---PNFVE---------------EDKRVF-VSYDGALYF 628 (813)
Q Consensus 576 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~k-------~-~~---~~~~~---------------~~~~~~-~~~~~~L~i 628 (813)
.+..+.+|.+++|--.- ...|.-.+.||+ + |. ++... .+.++. .-.+.+|.|
T Consensus 31 ievt~r~G~nVTLga~~-~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i 109 (258)
T PHA03240 31 EEHTTREGDPLLLGGGH-GLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLII 109 (258)
T ss_pred eecccccCCceeeCCcc-cCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEE
Confidence 34455667777775442 335677899998 1 11 11000 011111 114567999
Q ss_pred EeecccCCeeEEEEEEeeec
Q psy14896 629 SALEQIDAGNYSCNVQSKVS 648 (813)
Q Consensus 629 ~~~~~~d~G~Y~C~a~n~~g 648 (813)
..+..+|.|+|.-.---..|
T Consensus 110 ~~vn~sd~~nYcr~k~~~~g 129 (258)
T PHA03240 110 AHLNLSDAGEYCRKKCPPKG 129 (258)
T ss_pred EEEeecCcchhhhccCCCCC
Confidence 99999999999644333333
No 477
>PHA03112 IL-18 binding protein; Provisional
Probab=42.28 E-value=45 Score=29.03 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=37.8
Q ss_pred CCCCeEEEEEEecCC-CC-CeEEEEeCC-cccCCC---cee--------------eecceEEEECCCCCC-CCEEEEEEE
Q psy14896 685 KAGDKVRLECVAFGY-PV-PSYNWTRRG-SPLPRN---AYF--------------ENFNRILTIPNVKVE-DQGEYICRA 743 (813)
Q Consensus 685 ~~G~~v~l~C~~~g~-P~-p~i~W~k~g-~~l~~~---~~~--------------~~~~~~L~i~~v~~~-d~G~Y~C~a 743 (813)
.+|+++.|+|.+.+. |. --+.|.+++ +...+. +++ ..-...|++.+++.+ +.-.++|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 679999999999865 64 479999765 322211 111 011234666666644 333777776
Q ss_pred EcCCC
Q psy14896 744 SNDRS 748 (813)
Q Consensus 744 ~N~~G 748 (813)
....|
T Consensus 116 ~D~~~ 120 (141)
T PHA03112 116 MDLDG 120 (141)
T ss_pred ecCCc
Confidence 55443
No 478
>PF07979 Intimin_C: Intimin C-type lectin domain; InterPro: IPR013117 This domain is found at the C terminus of intimin. Its structure has been solved and shown to have a C-lectin type of structure []. Intimin is a bacterial adhesion molecule involved in intimate attachment of enteropathogenic and enterohemorrhagic Escherichia coli to mammalian host cells. Intimin targets the translocated intimin receptor (Tir), which is exported by the bacteria and integrated into the host cell plasma membrane.; GO: 0005488 binding, 0009405 pathogenesis, 0009986 cell surface; PDB: 1CWV_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 3NCX_B 3NCW_D.
Probab=39.67 E-value=15 Score=29.59 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=24.7
Q ss_pred cCCHHHHHhHcccCCCeEeeeCCHhHHHHHHHH
Q psy14896 48 LKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQ 80 (813)
Q Consensus 48 ~~~~~~a~~~C~~~~~~L~~i~~~~e~~~i~~~ 80 (813)
+++|.+|...|+..+|+|.+ +++|+.-|...
T Consensus 12 ~~~Y~~A~~~C~~~s~~Lps--S~~~L~~vy~~ 42 (101)
T PF07979_consen 12 RVTYSEAESICQNNSGRLPS--SQSELKDVYNE 42 (101)
T ss_dssp EETHHHHHHHTTTTCCESBS--SHHHHHHHHHH
T ss_pred eEeHHHHHHHHHhccccCcc--cHHHHHHHHHh
Confidence 68999999999999999986 55555555444
No 479
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=38.08 E-value=96 Score=22.84 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=13.2
Q ss_pred ccCCCceEEeCCCCCCCccEEEEcc
Q psy14896 581 NQNWGKAMFCDPPTNYPGVNYYWAR 605 (813)
Q Consensus 581 ~~g~~~~l~C~~~~~~p~~~v~W~k 605 (813)
..|.+.+| .|.+...|.|||
T Consensus 3 ~~G~N~TL-----~Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 3 TVGSNVTL-----VGPPDGPVTWYK 22 (63)
T ss_pred eEcCcEEE-----eCCCCCceEEEE
Confidence 44666666 455666799983
No 480
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=37.21 E-value=1.6e+02 Score=33.14 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=46.1
Q ss_pred CceeeCCCceeecCCCccccccEEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccccCC
Q psy14896 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269 (813)
Q Consensus 190 P~~~~~p~~~~v~~g~~~~g~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 269 (813)
|.+...+....+......++. +.|.-...| -...+.||.||+.|.... . +..+. -+.++.
T Consensus 651 P~~~~~~~ga~v~~~~~~~~~-~~l~l~~~g-~~~~~~W~lng~~l~~~~-------~-------~~~~~----w~~~~~ 710 (733)
T COG4953 651 PIIATHPDGARVQVIPGSDGA-VTLKLIAQG-GRGPIYWFLNGEPLGEAS-------R-------NRPVT----WKPEDA 710 (733)
T ss_pred CccccCCCCceEEecCCCCCe-eEEEEEcCC-CcceeEEEeCCcCccccc-------c-------CCcce----eccCCC
Confidence 444444444444443332222 777777766 345799999998773211 0 11111 157889
Q ss_pred eeEEEEeecCceeeEee
Q psy14896 270 GSYHCKASNKFGSIISE 286 (813)
Q Consensus 270 G~Y~C~a~n~~g~~~s~ 286 (813)
|.|+-.+....|...+.
T Consensus 711 G~~~ltVid~~G~~~sv 727 (733)
T COG4953 711 GYYKLTVIDASGRSASV 727 (733)
T ss_pred CeEEEEEEccCCceeeE
Confidence 99999999999976443
No 481
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=35.50 E-value=1.6e+02 Score=21.87 Aligned_cols=57 Identities=12% Similarity=0.220 Sum_probs=36.3
Q ss_pred CeEEEEeCCcccCCCce-eee-cceEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 702 PSYNWTRRGSPLPRNAY-FEN-FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 702 p~i~W~k~g~~l~~~~~-~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
....|+++|+.+..-.. +.+ .-.+..-+...+.+.|..++.+....|..-......|
T Consensus 7 v~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 7 VYHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEECCEEEEEEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 36889999986532211 010 0123333444558899999999999998777666655
No 482
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=35.48 E-value=7.3e+02 Score=28.45 Aligned_cols=116 Identities=21% Similarity=0.233 Sum_probs=73.1
Q ss_pred CCCCCeEEEEEEecCCCCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEEE--cCCC----ceEEEEEEE
Q psy14896 684 PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS--NDRS----ALESSVTIS 757 (813)
Q Consensus 684 ~~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~--N~~G----~~~~~~~l~ 757 (813)
...|+.++|.+.+.|.-...++..-+|..+....... ...+.. .++.+|.|...+. .... .+...+...
T Consensus 302 ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~Y~~--~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~ 376 (667)
T PRK14081 302 QLTDTDIELKAVAEGGKELLYRFIIKGKESEDSGYIR--NNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKSSIDYT 376 (667)
T ss_pred eecCceEEEEEEecCCCceEEEEEECCcEEeeccccc--cceEEE---eeCCCceEEEEEEEEcCcCcccccceEEEEEE
Confidence 4679999999999986666666666666553332211 223333 3456999988775 2222 245677777
Q ss_pred EEcCCcccc------cCCceeecCCCeEEEEEEEcccCCceE--EEEECCEeccc
Q psy14896 758 IQAEPNFTI------PLTDKHMDNQADLTWTCEAFGVPDVTY--SWFRNGELGHQ 804 (813)
Q Consensus 758 V~~~P~~~~------~~~~~~~~~g~~~~l~C~~~g~p~~~v--~W~k~g~~l~~ 804 (813)
|...|..+. .+.......|+++.+.|.+.|--...+ .=.+||+.+..
T Consensus 377 i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~ 431 (667)
T PRK14081 377 IEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEK 431 (667)
T ss_pred EcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEE
Confidence 776533322 122345667999999999987655543 33578988764
No 483
>PHA02935 Hypothetical protein; Provisional
Probab=33.47 E-value=61 Score=29.46 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=47.3
Q ss_pred eEEEEeCCcccC--CCceee-----------ecceEEEECCCCCCCCEEEEEEEEcCCCc-eEEEEEEEEEcCCccccc-
Q psy14896 703 SYNWTRRGSPLP--RNAYFE-----------NFNRILTIPNVKVEDQGEYICRASNDRSA-LESSVTISIQAEPNFTIP- 767 (813)
Q Consensus 703 ~i~W~k~g~~l~--~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~P~~~~~- 767 (813)
--.||.+++.+. ..++.. ..-.-|.|..+..+|+|.|.=+..-.-|. ...+..+.|+. .+..-
T Consensus 68 ytswyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdgvivtttmnisvka--niidlt 145 (349)
T PHA02935 68 YTSWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKA--NIIDLT 145 (349)
T ss_pred cceeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCceEEEEEEEEEEEe--eeEecc
Confidence 357999887652 111111 11224888899999999998777655564 34555666653 22211
Q ss_pred CCce-eecCCCeEEEEEEEcc
Q psy14896 768 LTDK-HMDNQADLTWTCEAFG 787 (813)
Q Consensus 768 ~~~~-~~~~g~~~~l~C~~~g 787 (813)
-... ....--.+.+.|++.+
T Consensus 146 grvryltrnycevkirceiks 166 (349)
T PHA02935 146 GRVRYLTRNYCEVKIRCEIKS 166 (349)
T ss_pred ceeeeeccccEEEEEEEEEee
Confidence 1111 1222356788898864
No 484
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=32.19 E-value=69 Score=34.92 Aligned_cols=209 Identities=12% Similarity=0.166 Sum_probs=25.7
Q ss_pred EEEEeeeccCCCCeEEEeecccccccccccccccCCCccEEeeCCeEEEcCCccc-cCCeeEEEEee--cCceeeEeeee
Q psy14896 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV-EDRGSYHCKAS--NKFGSIISESV 288 (813)
Q Consensus 212 v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-~d~G~Y~C~a~--n~~g~~~s~~~ 288 (813)
+.|.|.... ...+.|........... ..... ......|.|... .. .-...|+..++ +..+...+..+
T Consensus 3 ~~~~C~~~~--~~~y~W~~~~~~~~~~~-----~~~~~--~~~~~~l~ip~~-~L~~G~y~~~~~Vt~~~~~~~~~~~~~ 72 (440)
T PF02010_consen 3 VSLNCNDAS--TVTYNWTVFSGPSNSIV-----QDMDN--SSNTPQLTIPPY-TLPPGDYTFTLTVTASSNPGLSSTDSV 72 (440)
T ss_dssp ---------------BEEEEES-TT-EE-----ESTTT----SSSECEEECE-S--SCEEEEEEEEE--BCTTEEEEEEE
T ss_pred ccccccccc--ceEEEEEEEecCCcCcc-----ccccc--cCCceEEEeCcc-cCCCCCEEEEEEEEEECCCCceEEEEE
Confidence 678994433 46899987653211000 00000 122345666653 23 22335666666 34444335566
Q ss_pred EEeeeeecccccCCCCc--eeecCCCeEEEecCCCCCC-------cceEEEeecccccc-c----cCCccEEEccCccEE
Q psy14896 289 QLAFGFIGEFNLKRAPE--IGNQNWGKAMFCDPPTNYP-------GVNYYWARDYFPNF-V----EEDKRVFVSYDGALY 354 (813)
Q Consensus 289 ~l~v~~~~~~~~~~~~~--~~~~~~~~~l~C~~~~~~p-------~~~v~W~k~~~~~~-~----~~~~~~~~~~~~~L~ 354 (813)
.|.|...+......... .+..++.+.|.... .-+| ..++.|.-....-. . .............|.
T Consensus 73 ~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~-S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~ 151 (440)
T PF02010_consen 73 TVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQ-SYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLT 151 (440)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred EEEEeeccceeEEcCCccceeecCceEEEeeEE-EecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEE
Confidence 66665544333222222 22222234444331 1122 36788985433211 0 000111122234677
Q ss_pred EeeeeecCCeeeEEEEeeeccccCCCCCceeeEEccCCc-ccccccCCCCCCCCCcCCCCCCcEEEEEEEeecC----CC
Q psy14896 355 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN-FQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP----VP 429 (813)
Q Consensus 355 i~~v~~~D~G~Y~C~a~n~~g~~~~~s~~~~l~v~~~~~-~~~~~~~~~~~~~~~~~v~~g~~~~l~C~~~g~p----~p 429 (813)
|..-...-...|+..++-..+.....+....+.+...+. ...+.... .....+..++.+.|...+.+.+ ..
T Consensus 152 i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~----n~~~~vn~~~~l~L~~~~~~~~~~~~~~ 227 (440)
T PF02010_consen 152 IPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVS----NCKGKVNPSERLVLQASCSSCDSDSSNV 227 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEcccc----ccccccCCCCCEEEEEEEeCCCCcCCCE
Confidence 754333322237777665444332222333444432211 11111111 1112377888888877665432 34
Q ss_pred eeeEee
Q psy14896 430 SYNWTR 435 (813)
Q Consensus 430 ~i~W~~ 435 (813)
.+.|..
T Consensus 228 ~y~Wsl 233 (440)
T PF02010_consen 228 SYSWSL 233 (440)
T ss_dssp ------
T ss_pred EEEEEE
Confidence 678876
No 485
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=30.54 E-value=99 Score=27.84 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=26.4
Q ss_pred eEEEECCCCCCCCEEEEEEEEcCCCceEEEEEEEE
Q psy14896 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758 (813)
Q Consensus 724 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 758 (813)
-.|+|.+.+.+|+|.|.-++.=+......-+.+.+
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 45999999999999999999866554444444443
No 486
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=23.71 E-value=3.4e+02 Score=20.74 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=36.1
Q ss_pred CCeEEEEEEecCC-CCCeEEEEeCCcccCCCceeeecceEEEECCCCCCCCEEEEEEE--EcCCCceEE-EEEEE
Q psy14896 687 GDKVRLECVAFGY-PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRA--SNDRSALES-SVTIS 757 (813)
Q Consensus 687 G~~v~l~C~~~g~-P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a--~N~~G~~~~-~~~l~ 757 (813)
|+.+.|.....+. ....+.|..++....... .... .......|.|...+ .|..|.... +..+.
T Consensus 14 ~~~v~~~~~~~~~~~~~~~~W~fgdg~~~~~~-----~~~~---~~~y~~~G~y~v~l~v~d~~g~~~~~~~~V~ 80 (81)
T cd00146 14 GASVTFSASDSSGGSIVSYKWDFGDGEVSSSG-----EPTV---THTYTKPGTYTVTLTVTNAVGSSSTKTTTVV 80 (81)
T ss_pred CccEEEEEEeCCCCCEEEEEEEeCCCCccccC-----CCce---EEEcCCCcEEEEEEEEEeCCCCEEEEEEEEE
Confidence 8899999888754 445899988765211110 0111 11234678886554 576665444 55554
No 487
>PF07936 Defensin_4: Potassium-channel blocking toxin; InterPro: IPR012414 This family features the antihypertensive and antiviral proteins BDS-I (P11494 from SWISSPROT) and BDS-II (P59084 from SWISSPROT) expressed by Anemonia sulcata. BDS-I is organised into a triple-stranded antiparallel beta-sheet, with an additional small antiparallel beta-sheet at the N terminus []. Both peptides are known to specifically block the Kv3.4 potassium channel, and thus bring about a decrease in blood pressure []. Moreover, they inhibit the cytopathic effects of mouse hepatitis virus strain MHV-A59 on mouse liver cells, by an unknown mechanism []. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 2BDS_A 1BDS_A 1WXN_A 1WQK_A.
Probab=22.75 E-value=30 Score=21.52 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=8.6
Q ss_pred CCCchhhhccCCeEEEE
Q psy14896 27 LRCPQHWVQYRDSCYRF 43 (813)
Q Consensus 27 ~~Cp~~w~~~~~~Cy~~ 43 (813)
..||.|+ -|.++|++|
T Consensus 17 ~~CP~g~-GYTg~C~y~ 32 (34)
T PF07936_consen 17 GSCPGGY-GYTGSCGYF 32 (34)
T ss_dssp SS--TTS-T--EEEEET
T ss_pred cCCCCCC-ccccEeeec
Confidence 4699875 467899886
No 488
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=22.45 E-value=5.2e+02 Score=22.50 Aligned_cols=80 Identities=15% Similarity=0.249 Sum_probs=0.0
Q ss_pred eeEEEccCCCccccccCCCCCCCCCcCCCCCCeEEEEEEec--CCCCC---eEEEEe----------CCcccCCCceeee
Q psy14896 657 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF--GYPVP---SYNWTR----------RGSPLPRNAYFEN 721 (813)
Q Consensus 657 ~~l~v~~~p~~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~--g~P~p---~i~W~k----------~g~~l~~~~~~~~ 721 (813)
+.|.+.+-| ..+..|++|++.|... |+=.. .|.++. +|..+.+++++.-
T Consensus 33 F~v~tmPVp----------------k~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y~L 96 (137)
T PF12988_consen 33 FTVETMPVP----------------KKIKKGETVEIRCELKREGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDRYPL 96 (137)
T ss_dssp EEEEE--------------------SS--TTEEEEEEEEEEESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSEEE-
T ss_pred cEEEEeccc----------------cccCCCCEEEEEEEEecCceecccEEEEEEEeecCCEEEEecCCcEeccccceec
Q ss_pred cceEEEECCCC-CCCCEEEEEEEEcCCCceEE
Q psy14896 722 FNRILTIPNVK-VEDQGEYICRASNDRSALES 752 (813)
Q Consensus 722 ~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~ 752 (813)
...++++.-.+ .+|+-.....+.+..|+...
T Consensus 97 ~~~~FRLYYTS~s~~~q~idv~veDnfGq~~q 128 (137)
T PF12988_consen 97 EKEVFRLYYTSRSDDQQTIDVYVEDNFGQEQQ 128 (137)
T ss_dssp S-SEEEEEEEE-SSS-EEEEEEEEETTTEEEE
T ss_pred CcCEEEEEEecCCCCCceeEEEEEeCCCCEEE
No 489
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=22.14 E-value=21 Score=16.90 Aligned_cols=6 Identities=50% Similarity=1.758 Sum_probs=3.7
Q ss_pred Cchhhh
Q psy14896 29 CPQHWV 34 (813)
Q Consensus 29 Cp~~w~ 34 (813)
||.||.
T Consensus 4 C~~G~~ 9 (13)
T PF12661_consen 4 CPPGWT 9 (13)
T ss_dssp E-TTEE
T ss_pred CcCCCc
Confidence 777775
No 490
>TIGR01492 CPW_WPC Plasmodium falciparum CPW-WPC domain. This model represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats, and is known so far only in Plasmodium falciparum. It is named for motifs of CPxxW and (less well conserved) WPC.
Probab=21.60 E-value=41 Score=24.66 Aligned_cols=17 Identities=35% Similarity=1.027 Sum_probs=13.2
Q ss_pred cCCCchhhhccCCe--EEE
Q psy14896 26 ELRCPQHWVQYRDS--CYR 42 (813)
Q Consensus 26 ~~~Cp~~w~~~~~~--Cy~ 42 (813)
...||.||..-++. |.-
T Consensus 7 s~~CP~~W~~~~~~~~C~a 25 (62)
T TIGR01492 7 SSPCPENWIQKNDKYGCIA 25 (62)
T ss_pred CccCCccceecCCCCeeCC
Confidence 46799999998765 853
Done!