RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14896
(813 letters)
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 340 bits (873), Expect = e-105
Identities = 130/685 (18%), Positives = 203/685 (29%), Gaps = 124/685 (18%)
Query: 183 PDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
PD +GP F+K+PT+ + + + C A G P P W + D
Sbjct: 32 PDADQKGPVFLKEPTNRIDFSNS----TGAEIECKASGNPMPEIIWIRSDGT-------A 80
Query: 243 IDPLSDKRFTLSGGNLIIN-----DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE 297
+ + R S G L+ D RQ Y C A N+FGSIIS V +
Sbjct: 81 VGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQY 140
Query: 298 FNLKRAPEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPNFV---EEDKRVFVSYDGA 352
+ E + + C P+ W D N+ E D + V G
Sbjct: 141 YEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGE 200
Query: 353 LYFSALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 411
L+ + D +Y C + +++ R V + + K +
Sbjct: 201 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTY 260
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY------FENFNRILTIPNVKM----- 460
+ L C A GYPVP + W + R + + L I + +
Sbjct: 261 SGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGK 320
Query: 461 --------RG-------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY 499
G P D + +C G P +
Sbjct: 321 YLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR-----PAVFTCQYTGNPIKTV 375
Query: 500 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS- 558
W K+ K S L I + ED+G Y C N S +
Sbjct: 376 SWMKD----------------GKAIGHSESVLRIESV-KKEDKGMYQCFVRNDRESAEAS 418
Query: 559 -----ESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFPNF 611
F + G + + C P W D
Sbjct: 419 AELKLGGRFDPPVIRQAFQEETMEP------GPSVFLKC-VAGGNPTPEISWELDGKK-- 469
Query: 612 VEEDKRVFVSYD--------GALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLK 660
+ + R V L +++ D G Y C + + + L
Sbjct: 470 IANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAK------LN 523
Query: 661 VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE 720
V+ +Q++ +A AG+ + + C GYP+ S W R LP N +
Sbjct: 524 VYGLPYIRQME---------KKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQK 574
Query: 721 NF-NRILTIPNV-KVEDQGEYICRASNDR-SALESSVTISIQAEPNF-TIPLTDKHMDNQ 776
F N L I NV + DQ Y C A N + S+ + + P +
Sbjct: 575 VFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVG 634
Query: 777 ADLTWTCEAFGVP-DVTYSWFRNGE 800
LT C G + W +G+
Sbjct: 635 QYLTLHCSVPGGDLPLNIDWTLDGQ 659
Score = 283 bits (726), Expect = 1e-83
Identities = 79/364 (21%), Positives = 129/364 (35%), Gaps = 28/364 (7%)
Query: 454 TIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 513
P+ +GP F+K+PT+ + + + C A G P P W + D
Sbjct: 30 NPPDADQKGPVFLKEPTNRIDFSNS----TGAEIECKASGNPMPEIIWIRSDGT------ 79
Query: 514 NLIDPLSDKRFTLSGGNLIIN-----DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI 568
+ + R S G L+ D RQ Y C A N+FGSIIS V +
Sbjct: 80 -AVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 138
Query: 569 GEFNLKRAPEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPNFV---EEDKRVFVSYD 623
+ E + + C P+ W D N+ E D + V
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 198
Query: 624 GALYFSALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
G L+ + D +Y C + +++ R V + + K +
Sbjct: 199 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMK 258
Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY------FENFNRILTIPNVKVEDQ 736
+ L C A GYPVP + W + R + + L I + VED
Sbjct: 259 TYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 318
Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
G+Y+C +N +++ A + I + +D +TC+ G P T SW
Sbjct: 319 GKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 378
Query: 797 RNGE 800
++G+
Sbjct: 379 KDGK 382
Score = 231 bits (590), Expect = 6e-65
Identities = 114/685 (16%), Positives = 193/685 (28%), Gaps = 144/685 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA---GGYPNPSYEWFKEDYVQDRLVANLIDPL 246
Y+ N + C W ++
Sbjct: 139 QYYEADVNKEHVIRG-----NSAVIKCLIPSFVADFVEVVSWHTDE----EENYFPGAEY 189
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
K L G L I + + SY C+ ++ S I E P++
Sbjct: 190 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249
Query: 307 GNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRV---F 346
+ YP + W + ++ +
Sbjct: 250 --------VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRV 301
Query: 347 VSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKT 406
G L D+G Y C V + V G L V P +
Sbjct: 302 KQVSGTLIIKDAVVEDSGKYLCVVNNSV---GGESVETVLTV-------------TAPLS 345
Query: 407 FPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM- 460
P G C G P+ + +W + G + + +L I +VK
Sbjct: 346 AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS------ESVLRIESVKKE 399
Query: 461 -RG---------------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAG 492
+G P + + + + L C AG
Sbjct: 400 DKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPG-----PSVFLKCVAG 454
Query: 493 GYPNPSYEWFKEDY--VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS 550
G P P W + + + L I D G Y C A
Sbjct: 455 GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV---SYLNITSV-HANDGGLYKCIAK 510
Query: 551 NKFGSIISESVQLAFGFIGEFNLKRAPEI-GNQNW----GKA--MFCDPPTNYPGVNYYW 603
+K G S +L N+ P I + G+ + C P YP + W
Sbjct: 511 SKVGVA-EHSAKL--------NVYGLPYIRQMEKKAIVAGETLIVTC-PVAGYPIDSIVW 560
Query: 604 ARDYFPNFVEEDKRVFVSYDGALYFSALEQI-DAGNYSCNVQSKVSDTGRNGPFFPLKVF 662
RD + +++ V +G L +E+ D Y+C +++ + R ++V
Sbjct: 561 ERDNRA--LPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARG--SLEVQVM 616
Query: 663 PHSNFQQLKFPNNFPKTFPEAP-KAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRN---- 716
P P F E P + G + L C G +P + +WT G + +
Sbjct: 617 VL--------PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGIT 668
Query: 717 -AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDN 775
+ +LTI V+ G + C A N + + +++ P + + TDK
Sbjct: 669 TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQ 728
Query: 776 QADLTWTCEAFGVPDVTYSWFRNGE 800
+D C+A G P +W +
Sbjct: 729 GSDAKVECKADGFPKPQVTWKKAVG 753
Score = 227 bits (579), Expect = 2e-63
Identities = 135/636 (21%), Positives = 216/636 (33%), Gaps = 123/636 (19%)
Query: 190 PYFIKQPTDVVFDLSKRSIL---NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
P P V + + L C A GYP P + W+K + L
Sbjct: 241 PISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFI---EGTTRKQAVVL 297
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRA 303
+D R G LII D VED G Y C +N G E +V +
Sbjct: 298 ND-RVKQVSGTLIIKDA-VVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKID------ 349
Query: 304 PEIGNQNWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI 361
P ++G+ A+F C T P W +D K + S + L ++++
Sbjct: 350 PPTQTVDFGRPAVFTCQY-TGNPIKTVSWMKD--------GKAIGHS-ESVLRIESVKKE 399
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-KAGDKVRLE 420
D G Y C V++ LK+ + P + F E + G V L+
Sbjct: 400 DKGMYQCFVRNDR---ESAEASAELKLGGRFD------PPVIRQAFQEETMEPGPSVFLK 450
Query: 421 CVAFGYPVPSYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKM----------- 460
CVA G P P +W G + N ++ + L I +V
Sbjct: 451 CVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAK 510
Query: 461 --------------RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY 506
G +I+Q + + ++C GYP S W +++
Sbjct: 511 SKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGE-----TLIVTCPVAGYPIDSIVWERDN- 564
Query: 507 VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 566
+ P++ K+ G LII + + D+ +Y C A N+ G S+++
Sbjct: 565 -------RAL-PINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616
Query: 567 FIGEFNLKRAPEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY--- 622
+ E Q C P +N W D + ED + S
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQA--ISEDLGITTSRVGR 674
Query: 623 -DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP 681
L A+E AGN++C+ ++ G PL V P +
Sbjct: 675 RGSVLTIEAVEASHAGNFTCHARNLA---GHQQFTTPLNV-------------YVPPRWI 718
Query: 682 EAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFENFNRI------LTIP 729
P G ++EC A G+P P W + P + + I L +
Sbjct: 719 LEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVD 778
Query: 730 NVKVEDQGEYICRASNDR-SALESSVTISIQAEPNF 764
N++ ++G Y+C A N S L + + IS+QA +
Sbjct: 779 NIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHH 814
Score = 196 bits (500), Expect = 8e-53
Identities = 109/611 (17%), Positives = 179/611 (29%), Gaps = 125/611 (20%)
Query: 265 QVEDRGSYHCKASNKFGSI-----ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDP 319
+++ + A GS ++ Q F+ E + G + C
Sbjct: 7 RLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNST---GAEIEC-K 62
Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE------QIDAGNYSCNVQSK 373
+ P W R + +S DG L F ++ A Y+C +++
Sbjct: 63 ASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQ 122
Query: 374 VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVA---FG 425
S ++ + + G+ ++C+
Sbjct: 123 FGSI-------------ISRDVHVRAV--VAQYYEADVNKEHVIRGNSAVIKCLIPSFVA 167
Query: 426 YPVPSYNWTRRGSPLPRNAYFENFNRI-------LTIPNVKM------------------ 460
V +W + + L I V
Sbjct: 168 DFVEVVSWHTDEEENYFPGAEYD-GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGE 226
Query: 461 ------------RGPYFIKQPTDVVFDLSKRSIL---NDITLSCYAGGYPNPSYEWFKED 505
P P V + + L C A GYP P + W+K
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFI 286
Query: 506 YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQ 562
+ L+D R G LII D VED G Y C +N G E +V
Sbjct: 287 ---EGTTRKQAVVLND-RVKQVSGTLIIKDA-VVEDSGKYLCVVNNSVGGESVETVLTVT 341
Query: 563 LAFGFIGEFNLKRAPEIGNQNWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFV 620
+ P ++G+ A+F C T P W +D K +
Sbjct: 342 APLSAKID------PPTQTVDFGRPAVFTCQY-TGNPIKTVSWMKD--------GKAIGH 386
Query: 621 SYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF 680
S + L ++++ D G Y C V++ LK+ + P + F
Sbjct: 387 S-ESVLRIESVKKEDKGMYQCFVRNDR---ESAEASAELKLGGRFD------PPVIRQAF 436
Query: 681 PEAP-KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE---------NFNRILTIPN 730
E + G V L+CVA G P P +W G + N ++ + L I +
Sbjct: 437 QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITS 496
Query: 731 VKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD 790
V D G Y C A + E S +++ P + + L TC G P
Sbjct: 497 VHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGE-TLIVTCPVAGYPI 555
Query: 791 VTYSWFRNGEL 801
+ W R+
Sbjct: 556 DSIVWERDNRA 566
Score = 67.7 bits (165), Expect = 9e-12
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 726 LTIPNVKVEDQGEYICRASND--RSALESSVTISIQAEPNFTI-PLTDKHMDNQADLTWT 782
+ +PN +++ + A L ++ + Q P F P N
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 783 CEAFGVPDVTYSWFRNG 799
C+A G P W R+
Sbjct: 61 CKASGNPMPEIIWIRSD 77
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 309 bits (792), Expect = 5e-98
Identities = 107/346 (30%), Positives = 172/346 (49%), Gaps = 23/346 (6%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
GP F+++P+ V+F L + LSC G P P W +D D
Sbjct: 5 GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRWKLNG--------TDVDIGMD 54
Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 580
R+++ G+L+IN+P + +D G+Y C A+N FG+I+S +L F ++ F + R+
Sbjct: 55 FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114
Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYS 640
+ G + C PP + ++Y W + +P++ ++++R G LY + +E+ D GNY+
Sbjct: 115 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY-QDNRRFVSQETGNLYIAKVEKSDVGNYT 173
Query: 641 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECV 695
C V + V++ GP PL + + + PK + P+ G V+LEC
Sbjct: 174 CVVTNTVTNHKVLGPPTPLILRNDGVMGEYE-----PKIEVQFPETVPAEKGTTVKLECF 228
Query: 696 AFGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSV 754
A G PVP+ W R G P+ R A N IL IPN + ED G Y C A N R +
Sbjct: 229 ALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG 288
Query: 755 TISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
++ A+PN+ + D H+ + + W C+A G P TY W +NG+
Sbjct: 289 QLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 334
Score = 287 bits (736), Expect = 8e-90
Identities = 115/409 (28%), Positives = 180/409 (44%), Gaps = 68/409 (16%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
GP F+++P+ V+F L + LSC G P P W +D D
Sbjct: 5 GPVFVQEPSHVMFPLDSEE--KKVKLSCEVKGNPKPHIRWKLNG--------TDVDIGMD 54
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 307
R+++ G+L+IN+P + +D G+Y C A+N FG+I+S +L F ++ F + R+
Sbjct: 55 FRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYS 367
+ G + C PP + ++Y W + +P++ ++++R G LY + +E+ D GNY+
Sbjct: 115 RRGQGMVLLCGPPPHSGELSYAWIFNEYPSY-QDNRRFVSQETGNLYIAKVEKSDVGNYT 173
Query: 368 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECV 422
C V + V++ GP PL + + + PK + P+ G V+LEC
Sbjct: 174 CVVTNTVTNHKVLGPPTPLILRNDGVMGEYE-----PKIEVQFPETVPAEKGTTVKLECF 228
Query: 423 AFGYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKM-------------RG------ 462
A G PVP+ W R G P+ R A N IL IPN + RG
Sbjct: 229 ALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG 288
Query: 463 -------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 515
P +++ D+ + + + C A G P P+Y W K
Sbjct: 289 QLTFYAQPNWVQIINDIHVAMEE-----SVFWECKANGRPKPTYRWLKNG---------- 333
Query: 516 IDPL-SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
DPL + R + G L I + D G Y C A NK G I S S +L
Sbjct: 334 -DPLLTRDRIQIEQGTLNITI-VNLSDAGMYQCVAENKHGVIFS-SAEL 379
Score = 156 bits (396), Expect = 7e-42
Identities = 78/392 (19%), Positives = 115/392 (29%), Gaps = 74/392 (18%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRILTIPNVKM---RGPY---- 464
KV+L C G P P W G+ + + + + L I N G Y
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIA 82
Query: 465 ---------------FIKQPTDVVFDLSKRSIL--NDITLSCYA-GGYPNPSYEWFKEDY 506
F S S+ + L C SY W +Y
Sbjct: 83 TNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEY 142
Query: 507 VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 566
+ + + GNL I + D G+Y C +N +
Sbjct: 143 --------PSYQDNRRFVSQETGNLYIAKVEK-SDVGNYTCVVTNTVTNHKVLG------ 187
Query: 567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFP 609
L + + + P P W R
Sbjct: 188 --PPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRA--D 243
Query: 610 NFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQ 669
K +G L +Q DAG+Y C ++ G+N L + N+ Q
Sbjct: 244 GKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSR---GKNVAKGQLTFYAQPNWVQ 300
Query: 670 LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIP 729
+ N+ + V EC A G P P+Y W + G PL + L I
Sbjct: 301 I--IND--IHVAM----EESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNIT 352
Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQAE 761
V + D G Y C A N + SS +S+ AE
Sbjct: 353 IVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 301 bits (773), Expect = 3e-95
Identities = 113/345 (32%), Positives = 158/345 (45%), Gaps = 21/345 (6%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
GP F +QP +F S +TL+C A P +Y W + D
Sbjct: 4 GPVFEEQPAHTLFPEG--SAEEKVTLTCRARANPPATYRWKMNG--------TELKMGPD 53
Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 580
R+ L G+L+I++P + +D GSY C A+N G+++S L FGF+ EF+ + R P
Sbjct: 54 SRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKI 113
Query: 581 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNY 639
+ WG C PP +YP ++Y W + FPNF+ D R FVS G LY + E D GNY
Sbjct: 114 TEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNY 173
Query: 640 SCNVQSKVSDTG--RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECV 695
SC S + F L + Q + + FP A G V LEC
Sbjct: 174 SCFATSHIDFITKSVFSKFSQLSLAAEDARQ---YAPSIKAKFPADTYALTGQMVTLECF 230
Query: 696 AFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVT 755
AFG PVP W + + + +L I NV ED+G Y C A N +
Sbjct: 231 AFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288
Query: 756 ISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
I I A+P++ +TD D +DL W+C A G P W R+G+
Sbjct: 289 IIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ 333
Score = 279 bits (714), Expect = 1e-86
Identities = 121/408 (29%), Positives = 171/408 (41%), Gaps = 66/408 (16%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
GP F +QP +F S +TL+C A P +Y W + D
Sbjct: 4 GPVFEEQPAHTLFPEG--SAEEKVTLTCRARANPPATYRWKMNG--------TELKMGPD 53
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-RAPEIG 307
R+ L G+L+I++P + +D GSY C A+N G+++S L FGF+ EF+ + R P
Sbjct: 54 SRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKI 113
Query: 308 NQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNY 366
+ WG C PP +YP ++Y W + FPNF+ D R FVS G LY + E D GNY
Sbjct: 114 TEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNY 173
Query: 367 SCNVQSKVSDTG--RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECV 422
SC S + F L + Q + + FP A G V LEC
Sbjct: 174 SCFATSHIDFITKSVFSKFSQLSLAAEDARQ---YAPSIKAKFPADTYALTGQMVTLECF 230
Query: 423 AFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM-------------RG------- 462
AFG PVP W + + + +L I NV +G
Sbjct: 231 AFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288
Query: 463 ------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
P ++ TD D+ D+ SC A G P P+ W ++
Sbjct: 289 IIIHAQPDWLDVITDTEADIGS-----DLRWSCVASGKPRPAVRWLRDG----------- 332
Query: 517 DPL-SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
PL S R +SGG L + +ED G Y C A NK G++ + S +L
Sbjct: 333 QPLASQNRIEVSGGELRFSKL-VLEDSGMYQCVAENKHGTVYA-SAEL 378
Score = 157 bits (398), Expect = 3e-42
Identities = 81/402 (20%), Positives = 127/402 (31%), Gaps = 81/402 (20%)
Query: 406 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRILTIPNVKMR-- 461
FPE A +KV L C A P +Y W G+ L ++ + L I N
Sbjct: 15 LFPEG-SAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKD 73
Query: 462 -GPY----------------FIKQPTDVVFDLSKRSIL-----NDITLSCYA-GGYPNPS 498
G Y ++ F +R + + +C YP S
Sbjct: 74 AGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALS 133
Query: 499 YEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSII 557
Y W ++ P +RF + GNL I D G+Y C A++ I
Sbjct: 134 YRWLLNEF-------PNFIPADGRRFVSQTTGNLYIAKTEA-SDLGNYSCFATSHIDFIT 185
Query: 558 SE--SVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-----------------YPG 598
S E + AP I P + P
Sbjct: 186 KSVFSKFSQLSLAAEDARQYAPSI---------KAKFPADTYALTGQMVTLECFAFGNPV 236
Query: 599 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP 658
W + ++S + L+ ++ D G Y C ++ GR+
Sbjct: 237 PQIKWRKLD-----GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIK---GRDTYQGR 288
Query: 659 LKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY 718
+ + ++ + + G +R CVA G P P+ W R G PL
Sbjct: 289 IIIHAQPDWLDV--ITD--TEADI----GSDLRWSCVASGKPRPAVRWLRDGQPLASQNR 340
Query: 719 FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
E L + +ED G Y C A N + +S +++QA
Sbjct: 341 IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 288 bits (739), Expect = 5e-90
Identities = 102/359 (28%), Positives = 154/359 (42%), Gaps = 27/359 (7%)
Query: 454 TIPNVKMRGPYFIKQP-TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 512
+I N + P KQ D + D ++I + C A G P PS+ W +
Sbjct: 8 SIQNELTQPPTITKQSAKDHIVDPR-----DNILIECEAKGNPAPSFHWTRNS------- 55
Query: 513 ANLIDPLSDKRFTL--SGGNLII---NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGF 567
+ D R ++ G L+I + R E G Y C A NKFG+ +S ++L
Sbjct: 56 -RFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114
Query: 568 IGEFNLKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA 625
+ K + G + C+PP P +W + +DKRV ++G
Sbjct: 115 SPLWP-KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHNGD 172
Query: 626 LYFSALEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP 684
LYFS + D +YSCN + + T + F LKV + +P+ +
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232
Query: 685 KA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKVEDQGEYIC 741
G + LEC+A G P P W ++G LP + A FENFN+ L I NV ED GEY C
Sbjct: 233 MVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFC 292
Query: 742 RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
ASN ++ ++++ ++A P + + + D C A G P T W NGE
Sbjct: 293 LASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGE 351
Score = 267 bits (684), Expect = 6e-82
Identities = 102/416 (24%), Positives = 163/416 (39%), Gaps = 67/416 (16%)
Query: 186 IPRGPYFIKQP-TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
+ + P KQ D + D ++I + C A G P PS+ W + +
Sbjct: 13 LTQPPTITKQSAKDHIVDPR-----DNILIECEAKGNPAPSFHWTRNS--------RFFN 59
Query: 245 PLSDKRFTL--SGGNLII---NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 299
D R ++ G L+I + R E G Y C A NKFG+ +S ++L +
Sbjct: 60 IAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWP 119
Query: 300 LKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 357
K + G + C+PP P +W + +DKRV ++G LYFS
Sbjct: 120 -KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHNGDLYFSN 177
Query: 358 LEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--G 414
+ D +YSCN + + T + F LKV + +P+ + G
Sbjct: 178 VMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRG 237
Query: 415 DKVRLECVAFGYPVPSYNWTRRGSPLPRN-AYFENFNRILTIPNVKMR--G--------- 462
+ LEC+A G P P W ++G LP + A FENFN+ L I NV G
Sbjct: 238 MDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNK 297
Query: 463 ---------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYV 507
PY++ +P +++ + D L C A G P P+ +W
Sbjct: 298 MGSIRHTISVRVKAAPYWLDEPKNLILAPGE-----DGRLVCRANGNPKPTVQWMVNG-- 350
Query: 508 QDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
L + ++G +I D Q+ R Y C SN+ G +++ + +
Sbjct: 351 -----EPLQSAPPNPNREVAGDTIIFRDT-QISSRAVYQCNTSNEHGYLLA-NAFV 399
Score = 153 bits (389), Expect = 9e-41
Identities = 72/399 (18%), Positives = 121/399 (30%), Gaps = 81/399 (20%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPL-----PRNAYFENFNRILTIPNVKMR------G 462
D + +EC A G P PS++WTR PR + + L I G
Sbjct: 32 RDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRR-SGTLVIDFRSGGRPEEYEG 90
Query: 463 PY-------------------FIKQPTDVVFDLSKRSIL--NDITLSCYA-GGYPNPSYE 500
Y K P +L + +TL C G P+P
Sbjct: 91 EYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIF 150
Query: 501 WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 560
W + G+L ++ + + Y C A F I +
Sbjct: 151 WMSSS--------MEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQK 202
Query: 561 VQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-----------------YPGVNYYW 603
+ + + ++ P + W
Sbjct: 203 NPF------TLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAW 256
Query: 604 ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP 663
+ + DK F +++ AL + + + D+G Y C +K+ G ++V
Sbjct: 257 YKKGGD--LPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKM---GSIRHTISVRVKA 311
Query: 664 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFE 720
+ L P N G+ RL C A G P P+ W G PL P N E
Sbjct: 312 APYW--LDEPKN--LILAP----GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE 363
Query: 721 NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
+ + ++ + Y C SN+ L ++ +S+
Sbjct: 364 VAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 279 bits (715), Expect = 1e-86
Identities = 80/358 (22%), Positives = 129/358 (36%), Gaps = 31/358 (8%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
+GP F+K+PT+ + + + C A G P P W + D + +
Sbjct: 2 KGPVFLKEPTNRIDFSNS----TGAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 50
Query: 521 DKRFTLSGGNLIIN-----DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 575
R S G L+ D RQ Y C A N+FGSIIS V + +
Sbjct: 51 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 110
Query: 576 APEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPNFV---EEDKRVFVSYDGALYFSA 630
E + + C P+ W D N+ E D + V G L+
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIRE 170
Query: 631 LEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGD 688
+ D +Y C + +++ R V + + P K P
Sbjct: 171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK--PLELMVAH 228
Query: 689 KVRLECVAFGYPVPSYNWTRRGSPLPR------NAYFENFNRILTIPNVKVEDQGEYICR 742
+ L C A G+P PS+ W + R N + + L I + VED G+Y+C
Sbjct: 229 TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 288
Query: 743 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+N +++ A + I + +D +TC+ G P T SW ++G+
Sbjct: 289 VNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK 346
Score = 249 bits (638), Expect = 1e-75
Identities = 83/420 (19%), Positives = 127/420 (30%), Gaps = 80/420 (19%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+GP F+K+PT+ + + + C A G P P W + D + +
Sbjct: 2 KGPVFLKEPTNRIDFSNS----TGAEIECKASGNPMPEIIWIRSD-------GTAVGDVP 50
Query: 248 DKRFTLSGGNLIIN-----DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
R S G L+ D RQ Y C A N+FGSIIS V + +
Sbjct: 51 GLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 110
Query: 303 APEIGNQNWGKAMFCDPPTNY--PGVNYYWARDYFPNFV---EEDKRVFVSYDGALYFSA 357
E + + C P+ W D N+ E D + V G L+
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIRE 170
Query: 358 LEQIDA-GNYSCNVQSKVSDTGRNGPFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGD 415
+ D +Y C + +++ R V + + P K P
Sbjct: 171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK--PLELMVAH 228
Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLPR------NAYFENFNRILTIPNVKM--------- 460
+ L C A G+P PS+ W + R N + + L I + +
Sbjct: 229 TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCV 288
Query: 461 ----RG-------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK 503
G P D + +C G P + W K
Sbjct: 289 VNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR-----PAVFTCQYTGNPIKTVSWMK 343
Query: 504 EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ K S L I + ED+G Y C N S + S +L
Sbjct: 344 D----------------GKAIGHSESVLRIESV-KKEDKGMYQCFVRNDRESAEA-SAEL 385
Score = 140 bits (354), Expect = 3e-36
Identities = 66/401 (16%), Positives = 109/401 (27%), Gaps = 80/401 (19%)
Query: 410 APKAGDKVRLECVAFGYPVPSYNWTRRG----SPLPRNAYFENFNRILTIPNVKMRG--- 462
+EC A G P+P W R +P + + L P +
Sbjct: 15 DFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS-DGKLVFPPFRAEDYRQ 73
Query: 463 ------------------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAG 492
Y+ N + C
Sbjct: 74 EVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRG-----NSAVIKCLIP 128
Query: 493 GY---PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 549
+ W ++ K L G L I + + SY C+
Sbjct: 129 SFVADFVEVVSWHTDEEENYFP----GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRT 184
Query: 550 SNKFGSIISESVQLAFGFIGEFNLKRAPEI--GNQNWGKA-------MFCDPPTNYPGVN 600
++ S I E AP Q + + C P +P +
Sbjct: 185 KHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC-PAQGFPAPS 243
Query: 601 YYWARDYFPNFVEEDKRV---FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF 657
+ W + ++ + G L D+G Y C V + V G
Sbjct: 244 FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSV---GGESVET 300
Query: 658 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA 717
L V + + P +T G C G P+ + +W + G + +
Sbjct: 301 VLTVTAPLSAKID--PPT--QTVDF----GRPAVFTCQYTGNPIKTVSWMKDGKAIGHS- 351
Query: 718 YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
+L I +VK ED+G Y C NDR + E+S + +
Sbjct: 352 -----ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 284 bits (727), Expect = 3e-86
Identities = 107/633 (16%), Positives = 183/633 (28%), Gaps = 132/633 (20%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
PYFI+ V + ITL C G P W+KE +
Sbjct: 6 PYFIEPLEHVEAAIG-----EPITLQCKVDGTPEIRIAWYKEH--------TKLRSAPAY 52
Query: 250 RFTLSG--GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
+ +L+IN D G Y CKA N G++ S +V + + R +
Sbjct: 53 KMQFKNNVASLVINKV-DHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDV 111
Query: 308 NQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQIDAG 364
++ G + C + W +D + + + ++ L +Q G
Sbjct: 112 HETLGFPVAFEC-RINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVG 170
Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRL 419
Y+C+ + + G L + H P F P G+
Sbjct: 171 QYNCSASNPL---GTASSSAKLTLSEH----------EVPPFFDLKPVSVDLALGESGTF 217
Query: 420 ECVAFGYPVPSYNWTRRGSPLPRN----AYFENFNRILTIPNVKM-------------RG 462
+C G W + + LT+ V G
Sbjct: 218 KCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG 277
Query: 463 -------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD 509
P FIK+ C GG P W+K++
Sbjct: 278 KDSCSAQLGVQEPPRFIKKLEPSRIVKQDE----HTRYECKIGGSPEIKVLWYKDE---- 329
Query: 510 RLVANLIDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLA 564
I S R + L + + VED G Y C+A N GS S V+
Sbjct: 330 ----TEIQESSKFRMSFVESVAVLEMYNL-SVEDSGDYTCEAHNAAGSASSSTSLKVKEP 384
Query: 565 FGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY 622
F + + + G + C+ P W +D + K+ +
Sbjct: 385 PVFRKKPHPVETLK------GADVHLECE-LQGTPPFQVSWHKDKRE--LRSGKKYKIMS 435
Query: 623 DGA---LYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF 676
+ ++ ++ D G Y C N + G + +
Sbjct: 436 ENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGS------ITL-------------KA 476
Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRIL 726
P F + G++V+L+ G S W + + R + + L
Sbjct: 477 PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATL 536
Query: 727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
+ + G+Y C+ N+ E T+S+
Sbjct: 537 QFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 200 bits (511), Expect = 1e-55
Identities = 105/531 (19%), Positives = 169/531 (31%), Gaps = 99/531 (18%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYD---GALYFSALEQIDAGNYSCNVQSKVSDTGR 379
P + W +++ + + + +L + ++ D G Y+C ++ V
Sbjct: 32 TPEIRIAWYKEHTK--LRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVAS 89
Query: 380 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWT 434
+ L + P +F K G V EC G +W
Sbjct: 90 S---AVLVIKER----------KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWY 136
Query: 435 RRGSPLPRNA----YFENFNRILTIPNVK-------------MRG--------------- 462
+ G L +A F + L I G
Sbjct: 137 KDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEV 196
Query: 463 -PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
P+F +P V L + T C+ G W K++ I P +
Sbjct: 197 PPFFDLKPVSVDLALGE-----SGTFKCHVTGTAPIKITWAKDN--------REIRPGGN 243
Query: 522 KRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF----GFIGEFNLKR 575
+ TL L + D G Y C ASN G S S QL FI + R
Sbjct: 244 YKMTLVENTATLTVLKV-TKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSR 301
Query: 576 APEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALEQ 633
+ + C P + W +D + + FV L L
Sbjct: 302 IVKQD----EHTRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSV 356
Query: 634 IDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLE 693
D+G+Y+C + + LKV F++ P+ + G V LE
Sbjct: 357 EDSGDYTCEAHNAAGSASSS---TSLKVKEPPVFRK--KPHP--VETLK----GADVHLE 405
Query: 694 CVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSA 749
C G P +W + L + ENF + I NV D GEY C+ASND +
Sbjct: 406 CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS 465
Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+I+++A P F L+D ++ G ++ +WF++
Sbjct: 466 DTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKG 516
Score = 191 bits (487), Expect = 1e-52
Identities = 87/454 (19%), Positives = 141/454 (31%), Gaps = 92/454 (20%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILT 454
P F E + G+ + L+C G P W + + L F+N L
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 455 IPNVKM--RGPY---------------------------FIKQPTDVVFDLSKRSILNDI 485
I V G Y F ++ DV L +
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGF-----PV 119
Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG--GNLIINDPRQVEDRG 543
C G W+K+ L+ ++ + + L I Q G
Sbjct: 120 AFECRINGSEPLQVSWYKDG--------ELLKDDANLQTSFIHNVATLQILQTDQ-SHVG 170
Query: 544 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ------NWGKA--MFCDPPTN 595
Y+C ASN G+ S S +L + P + G++ C T
Sbjct: 171 QYNCSASNPLGTASS-SAKLTLS-----EHEVPPFFDLKPVSVDLALGESGTFKC-HVTG 223
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYD---GALYFSALEQIDAGNYSCNVQSKVSDTGR 652
+ WA+D + ++ L + + DAG Y+C + G+
Sbjct: 224 TAPIKITWAKDNRE--IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA---GK 278
Query: 653 NGPFFPLKVF--PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRG 710
+ L V P F + K + R EC G P W +
Sbjct: 279 DSCSAQLGVQEPPR--FIK-------KLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE 329
Query: 711 SPLPRNA----YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI 766
+ + ++ F +L + N+ VED G+Y C A N + SS ++ ++ P F
Sbjct: 330 TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK 389
Query: 767 PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
AD+ CE G P SW ++
Sbjct: 390 KPHPVETLKGADVHLECELQGTPPFQVSWHKDKR 423
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 264 bits (675), Expect = 8e-81
Identities = 67/358 (18%), Positives = 116/358 (32%), Gaps = 32/358 (8%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPL 519
+ P QP +V+F + N L C G Y W K+ +
Sbjct: 5 KYPVLKDQPAEVLFREN-----NPTVLECIIEGNDQGVKYSWKKDG--------KSYNWQ 51
Query: 520 SDK-RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 578
G+L+ P+ D G Y C A G S + ++ K +
Sbjct: 52 EHNAALRKDEGSLVFLRPQA-SDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEK 110
Query: 579 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-----NFVEEDKRVFVSYDGALYFSALEQ 633
+ + C P YP W + + + D+R+ DG LYF+ + +
Sbjct: 111 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTK 170
Query: 634 IDA---GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 690
D Y C ++ D + +K N P + KAGD
Sbjct: 171 EDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVT 230
Query: 691 RLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYICRAS 744
+ C+ P+ N+ + G + N + + L ED+G Y C
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290
Query: 745 NDR-SALESSVTISIQAEPNFTIPLTDK-HMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
N + S+ +++ + P + + D+T C+ G+P W N +
Sbjct: 291 NGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK 348
Score = 254 bits (651), Expect = 2e-77
Identities = 77/422 (18%), Positives = 131/422 (31%), Gaps = 74/422 (17%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLI 243
+ + P QP +V+F + N L C G Y W K+
Sbjct: 2 PVDKYPVLKDQPAEVLFREN-----NPTVLECIIEGNDQGVKYSWKKDG--------KSY 48
Query: 244 DPLSDK-RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
+ G+L+ P+ D G Y C A G S + ++ K
Sbjct: 49 NWQEHNAALRKDEGSLVFLRPQA-SDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKT 107
Query: 303 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-----NFVEEDKRVFVSYDGALYFSA 357
+ + + C P YP W + + + D+R+ DG LYF+
Sbjct: 108 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTI 167
Query: 358 LEQIDA---GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAG 414
+ + D Y C ++ D + +K N P + KAG
Sbjct: 168 VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG 227
Query: 415 DKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKM-------- 460
D + C+ P+ N+ + G + N + + L
Sbjct: 228 DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTC 287
Query: 461 -----RG--------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW 501
G P + ++P V+ + D+T+ C G P P+ W
Sbjct: 288 EVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQ----DVTIPCKVTGLPAPNVVW 343
Query: 502 FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 561
PLS R T++ L+I + D+G Y C+A+N+ G
Sbjct: 344 SHNA-----------KPLSGGRATVTDSGLVIKGV-KNGDKGYYGCRATNEHGDKYF-ET 390
Query: 562 QL 563
+
Sbjct: 391 LV 392
Score = 151 bits (384), Expect = 4e-40
Identities = 70/402 (17%), Positives = 107/402 (26%), Gaps = 81/402 (20%)
Query: 412 KAGDKVRLECVAFGYPVP-SYNWTRRGSPLP---RNAYFENFNRILTIPNVKM--RGPY- 464
+ + LEC+ G Y+W + G NA L + G Y
Sbjct: 19 RENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQ 78
Query: 465 ------------------------FIKQPTDVVFDLSKRSILNDITLSC-YAGGYPNPSY 499
+ + L C YP P
Sbjct: 79 CFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEG-----RPFQLDCVLPNAYPKPLI 133
Query: 500 EWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIIND--PRQVEDRGSYHCKASNKFGSI 556
W K N D+R T GNL V D Y C A N
Sbjct: 134 TWKKRLS---GADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE 190
Query: 557 ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-----------------YPGV 599
V+ +K + + G+ + + P
Sbjct: 191 EVVLVEY--------EIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMG 242
Query: 600 NYYWARDYFP---NFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 656
+ ++ N + R + L F D G Y+C V + V ++
Sbjct: 243 YPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS-- 300
Query: 657 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRN 716
L V ++Q P+ G V + C G P P+ W+ PL
Sbjct: 301 LKLTVVSAPKYEQK------PEKVIVVK-QGQDVTIPCKVTGLPAPNVVWSHNAKPLS-G 352
Query: 717 AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
+ L I VK D+G Y CRA+N+ + +
Sbjct: 353 GRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 36.0 bits (83), Expect = 0.050
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 757 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVP-DVTYSWFRNGE 800
+ P + C G V YSW ++G+
Sbjct: 2 PVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGK 46
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 244 bits (624), Expect = 6e-71
Identities = 102/581 (17%), Positives = 175/581 (30%), Gaps = 99/581 (17%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ + +C +Y W+ + + + + L + + D
Sbjct: 127 DAVAFTCEPETQD-ATYLWWVNN--------QSLPVSPRLQLSNGNRTLTLFNV-TRNDT 176
Query: 270 GSYHCKASNKFGSIISESVQLAFGFIGEF-NLKRAPEIGNQNWGKAMFCDPPTNYPGVNY 328
SY C+ N + S+SV L + + + + C +N P Y
Sbjct: 177 ASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN-PPAQY 235
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV 388
W + F L+ + ++G+Y+C + + R + V
Sbjct: 236 SWFVN----------GTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT-TITV 284
Query: 389 FPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYF 446
+ + N+ P D V L C Y W LP
Sbjct: 285 YAEPPKPFITSNNSNPVE------DEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQL 337
Query: 447 ENFNRILTIPNVKMR--GPY-------------------FIKQPTDVVFDLSKRSIL--N 483
N NR LT+ +V GPY + P D S
Sbjct: 338 SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGV 397
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 543
+++LSC+A P Y W D L I++ ++ G
Sbjct: 398 NLSLSCHAASNPPAQYSWLI-----------------DGNIQQHTQELFISNI-TEKNSG 439
Query: 544 SYHCKASNKFGSIISESVQLAFGFIGEF--NLKRAPEIGNQNWGKA--MFCDPPTNYPGV 599
Y C+A+N S + E + A C+P
Sbjct: 440 LYTCQANNSASGH-SRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTY 498
Query: 600 NYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL 659
++ P + + + L + + DA Y C +Q+ VS R+ P L
Sbjct: 499 LWWVNGQSLPV---SPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVS-ANRSDPVT-L 553
Query: 660 KVFPHSNFQQLKFPNNFPKTFPEA-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY 718
V L P+ + P++ +G + L C + P P Y+W G P
Sbjct: 554 DV--------LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQ----- 600
Query: 719 FENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
++L I + + G Y C SN + +S+ SI
Sbjct: 601 --QHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639
Score = 242 bits (620), Expect = 3e-70
Identities = 118/650 (18%), Positives = 197/650 (30%), Gaps = 99/650 (15%)
Query: 210 NDITLSCYAGGYPNPSYEWFKED----------YVQDRLVANLIDPLSDKRFTLSGGNLI 259
++ L + Y W+K + YV A S + +L+
Sbjct: 15 KEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLL 74
Query: 260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF--C 317
I + Q D G Y + Q + A+ C
Sbjct: 75 IQNIIQ-NDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133
Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA-LYFSALEQIDAGNYSCNVQSKVSD 376
+P T Y W + + R+ +S L + + D +Y C Q+ VS
Sbjct: 134 EPETQDA--TYLWWVNNQS--LPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVS- 188
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP--KAGDKVRLECVAFGYPVPSYNWT 434
R L V + + P P ++G+ + L C A P Y+W
Sbjct: 189 -ARRSDSVILNV---------LYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWF 238
Query: 435 RRGSPLPRNAYFENFNRILTIPNVKM--RGPY--------------------FIKQPTDV 472
G+ + L IPN+ + G Y +P
Sbjct: 239 VNGTFQQST-------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP 291
Query: 473 VFDLSKRSIL---NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG 529
+ + + + + L+C +Y W+ + + + +
Sbjct: 292 FITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNN--------QSLPVSPRLQLSNDNR 342
Query: 530 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF 589
L + + D G Y C N+ S+ V L G + +P G +
Sbjct: 343 TLTLLSVTR-NDVGPYECGIQNELSVDHSDPVILNV-LYGPDDPTISPSYTYYRPGVNLS 400
Query: 590 --CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
C +N P Y W D + L+ S + + ++G Y+C +
Sbjct: 401 LSCHAASN-PPAQYSWLID----------GNIQQHTQELFISNITEKNSGLYTCQANNSA 449
Query: 648 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 707
S R + + + +N K + D V C +Y W
Sbjct: 450 SGHSRTTV---KTITVSAELPKPSISSNNSKPVED----KDAVAFTCEPEAQN-TTYLWW 501
Query: 708 RRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEPN- 763
G LP + N NR LT+ NV D Y+C N SA S VT+ + P+
Sbjct: 502 VNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDT 561
Query: 764 FTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKAV 813
I D + A+L +C + P YSW NG L + +
Sbjct: 562 PIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKI 611
Score = 200 bits (510), Expect = 4e-55
Identities = 72/437 (16%), Positives = 129/437 (29%), Gaps = 78/437 (17%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--------------------YFENFNRIL 453
G +V L + Y+W + N L
Sbjct: 14 GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73
Query: 454 TIPNVKM--RGPY--------------------FIKQPTDVVFDLSKRSIL--NDITLSC 489
I N+ G Y + + P + + + + + + +C
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTC 133
Query: 490 YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 549
+Y W+ + + + + L + + D SY C+
Sbjct: 134 EPETQD-ATYLWWVNN--------QSLPVSPRLQLSNGNRTLTLFNV-TRNDTASYKCET 183
Query: 550 SNKFGSIISESVQLAFGFIGEF-NLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYF 608
N + S+SV L + + + + C +N P Y W +
Sbjct: 184 QNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN-PPAQYSWFVN-- 240
Query: 609 PNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ 668
F L+ + ++G+Y+C + + R + V+
Sbjct: 241 --------GTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT-TITVYAEPPKP 291
Query: 669 QLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRIL 726
+ N+ P D V L C Y W LP N NR L
Sbjct: 292 FITSNNSNPVE------DEDAVALTCEPEIQNTT-YLWWVNNQSLPVSPRLQLSNDNRTL 344
Query: 727 TIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEP-NFTIPLTDKHMDNQADLTWTCE 784
T+ +V D G Y C N+ S S V +++ P + TI + + +L+ +C
Sbjct: 345 TLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCH 404
Query: 785 AFGVPDVTYSWFRNGEL 801
A P YSW +G +
Sbjct: 405 AASNPPAQYSWLIDGNI 421
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 208 bits (532), Expect = 3e-60
Identities = 82/355 (23%), Positives = 132/355 (37%), Gaps = 38/355 (10%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPL 519
R +F+ +P+D V ++ L+C A P +W K+ ++
Sbjct: 20 RSLHFVSEPSDAVTMRGG-----NVLLNCSAESDRGVPVIKWKKDG--------LILALG 66
Query: 520 SDKRFT-LSGGNLIINDPR----QVEDRGSYHCKAS-NKFGSIISESVQLAFGFIGEFNL 573
D R L G+L+I + D G Y C+AS GSIIS + ++ F
Sbjct: 67 MDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLS 126
Query: 574 KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALE 632
+ + C P +W ++ N + D RV V GAL S L+
Sbjct: 127 QTESITAFMGDTVLLKC-EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQ 185
Query: 633 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AG 687
D+G Y C+ ++ S N + P + F + P G
Sbjct: 186 PGDSGVYRCSARNPASTRTGNEAEVRILSDP---------GLHRQLYFLQRPSNVIAIEG 236
Query: 688 DKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRASN 745
LEC GYP PS+ W R + + Y L I NV +D G Y C +
Sbjct: 237 KDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTY 296
Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ +S +++ P F ++ + D+ + C G P T +W +NG+
Sbjct: 297 KNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGD 351
Score = 192 bits (490), Expect = 2e-54
Identities = 97/419 (23%), Positives = 144/419 (34%), Gaps = 80/419 (19%)
Query: 186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLID 244
R +F+ +P+D V ++ L+C A P +W K+ ++
Sbjct: 18 GRRSLHFVSEPSDAVTMRGG-----NVLLNCSAESDRGVPVIKWKKDG--------LILA 64
Query: 245 PLSDKRFT-LSGGNLIINDPR----QVEDRGSYHCKAS-NKFGSIISESVQLAFGFIGEF 298
D R L G+L+I + D G Y C+AS GSIIS + ++ F
Sbjct: 65 LGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRF 124
Query: 299 NLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSA 357
+ + C P +W ++ N + D RV V GAL S
Sbjct: 125 LSQTESITAFMGDTVLLKC-EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISR 183
Query: 358 LEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK----- 412
L+ D+G Y C+ ++ S N + P + F + P
Sbjct: 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDP---------GLHRQLYFLQRPSNVIAI 234
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVK----------- 459
G LEC GYP PS+ W R + + Y L I NV
Sbjct: 235 EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVV 294
Query: 460 --MRG-------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE 504
P+F+ P+++ S DI C G P P+ W K
Sbjct: 295 TYKNENISASAELTVLVPPWFLNHPSNLYAYES-----MDIEFECAVSGKPVPTVNWMKN 349
Query: 505 DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+++ P SD + G NL I D G Y C A N+ G+ S S QL
Sbjct: 350 G--------DVVIP-SDYFQIVGGSNLRILGV-VKSDEGFYQCVAENEAGNAQS-SAQL 397
Score = 168 bits (427), Expect = 7e-46
Identities = 83/416 (19%), Positives = 120/416 (28%), Gaps = 98/416 (23%)
Query: 406 TFPEAPK-----AGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNA---YFENFNRILTIP 456
F P G V L C A VP W + G L + N L I
Sbjct: 23 HFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQ 82
Query: 457 NVKMRG---------------------------------PYFIKQPTDVVFDLSKRSILN 483
N+ F+ Q + +
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGD----- 137
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDR 542
+ L C G P P+ W K +L D R L G L I+ + D
Sbjct: 138 TVLLKCEVIGDPMPTIHWQKNQ-------QDLNPIPGDSRVVVLPSGALQISRLQP-GDS 189
Query: 543 GSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNY------ 596
G Y C A N + ++ + P + + F P+N
Sbjct: 190 GVYRCSARNPASTRTGNEAEV--------RILSDPGLHR----QLYFLQRPSNVIAIEGK 237
Query: 597 -----------PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS 645
P ++ W R K+ + L S + D+G Y+C V
Sbjct: 238 DAVLECCVSGYPPPSFTWLRGEEV-IQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTY 296
Query: 646 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN 705
K L V F L P+N E + EC G PVP+ N
Sbjct: 297 KN---ENISASAELTVLVPPWF--LNHPSN--LYAYE----SMDIEFECAVSGKPVPTVN 345
Query: 706 WTRRGSPLPRNAYFE-NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
W + G + + YF+ L I V D+G Y C A N+ +SS + +
Sbjct: 346 WMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 42.9 bits (101), Expect = 3e-04
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 742 RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV-PDVTYSWFRNGE 800
R ++ + + +F +D ++ C A W ++G
Sbjct: 2 RWGSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 211 bits (539), Expect = 3e-58
Identities = 101/727 (13%), Positives = 173/727 (23%), Gaps = 163/727 (22%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
P Q + + + ++C G + + W ++ V
Sbjct: 29 LDLPRLSIQKDILTIKAN-----TTLQITCR--GQRDLDWLWPNNQSGSEQRVEVTECSD 81
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG--SIISESVQLAFGFIGEFNLKRAP 304
TL I D G+Y C I FI + +
Sbjct: 82 GLFCKTL-----TIPKV-IGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGV 135
Query: 305 EIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQID 362
+N K + C + V+ R FV + R+ +
Sbjct: 136 VYITENKNKTVVIPCLGSISNLNVSLCA-RYPEKRFVPDGNRISWDSKKGFTIPSYMISY 194
Query: 363 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKV 417
AG C + + + + + G+K+
Sbjct: 195 AGMVFCEAKIND------------ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 242
Query: 418 RLECVAFGYPVPSYNWT--------------RRGSPLPRNAYFENFNRILTIPNVKMR-- 461
L C A ++ R + + F LTI V
Sbjct: 243 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ 302
Query: 462 GPYF-----------------IKQPTDVVFDLSKRSIL-----NDITLSCYAGGYPNPSY 499
G Y + + V F S++ + + GYP P
Sbjct: 303 GLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEI 362
Query: 500 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS- 558
+W+K PL +G L I + + D G+Y +N
Sbjct: 363 KWYKNGI-----------PLESNHTIKAGHVLTIMEVSE-RDTGNYTVILTNPISKEKQS 410
Query: 559 ----------------------------ESVQL---AFGF--IGEFNLKRAPEIGNQNWG 585
+ L + + E N
Sbjct: 411 HVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEP 470
Query: 586 KAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA----LYFSALEQIDAGNYSC 641
N +E +K F +G + Y C
Sbjct: 471 SQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKC 530
Query: 642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 701
+KV GR V P + V L C A
Sbjct: 531 EAVNKV---GRGERVISFHV---------TRGPEITLQPDMQPTEQESVSLWCTADRSTF 578
Query: 702 PSYNWTRRGSPLP------------------------RNAYFENFNRILTIPNVKVEDQG 737
+ W + G + N I+ + N ++DQG
Sbjct: 579 ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQG 638
Query: 738 EYICRASN----DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
+Y+C A + R + +T+ + P T L ++ + +C A G P
Sbjct: 639 DYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI 698
Query: 794 SWFRNGE 800
WF++ E
Sbjct: 699 MWFKDNE 705
Score = 188 bits (477), Expect = 5e-50
Identities = 102/696 (14%), Positives = 182/696 (26%), Gaps = 149/696 (21%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
+ R P+ + + + C +
Sbjct: 119 QDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP--------EKRF 170
Query: 245 PLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
R + S I + G C+A S S + +++ +
Sbjct: 171 VPDGNRISWDSKKGFTIPSY-MISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLS 229
Query: 304 PE------IGNQNWGKAMF-CDPPTN-YPGVNYYWARDYFP---------NFVEEDKRVF 346
P +G K + C T G+++ W + +
Sbjct: 230 PSHGIELSVGE----KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 285
Query: 347 VSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKT 406
+ L + + D G Y+C S + ++V + F
Sbjct: 286 KKFLSTLTIDGVTRSDQGLYTCAASSGL---MTKKNSTFVRV------HEKPFVAFGSGM 336
Query: 407 FPEA-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--G- 462
G++VR+ GYP P W + G PL N + +LTI V R G
Sbjct: 337 ESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKA-GHVLTIMEVSERDTGN 395
Query: 463 -------------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP 497
P ++ D + TL+C P P
Sbjct: 396 YTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYG--TTQTLTCTVYAIPPP 453
Query: 498 -SYEWFKED------------------------YVQDRLVANLIDPLSDKRFTLSGGNLI 532
W+ + V+D N I+ ++ + G N
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513
Query: 533 IN--DPRQVEDRGSYHCKASNKFGS---------------IISESVQLAFG----FIGEF 571
++ + Y C+A NK G + +Q
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTA 573
Query: 572 NLKRAPEI-----GNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 626
+ + G Q + P ++ W + + +
Sbjct: 574 DRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTN------DILIM 627
Query: 627 YFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK- 685
D G+Y C Q + + H +QL T +
Sbjct: 628 ELKNASLQDQGDYVCLAQDRKTKKR------------HCVVRQLTVLERVAPTITGNLEN 675
Query: 686 ----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEY 739
G+ + + C A G P P W + L ++ ++ NR LTI V+ ED+G Y
Sbjct: 676 QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLY 735
Query: 740 ICRASNDRSALESSVTISIQAEPNFT-IPLTDKHMD 774
C+A + + I+ T + T H
Sbjct: 736 TCQACSVLGCAKVEAFFIIEGAQEKTNLERTHHHHH 771
Score = 151 bits (382), Expect = 4e-38
Identities = 71/496 (14%), Positives = 125/496 (25%), Gaps = 97/496 (19%)
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
+ C S + ++ + +K A +++ C
Sbjct: 8 AVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIK--------------ANTTLQITC 53
Query: 422 VAFGYPVPSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKM---------------- 460
G + W S + F + LTIP V
Sbjct: 54 R--GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLA 111
Query: 461 ----------RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDR 510
R P+ + + + C +
Sbjct: 112 SVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP----- 166
Query: 511 LVANLIDPLSDKRFTL-SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG 569
R + S I + G C+A S S +
Sbjct: 167 ---EKRFVPDGNRISWDSKKGFTIPSY-MISYAGMVFCEAKINDESYQSIMYIVVVVGYR 222
Query: 570 EFNLKRAPE------IGNQNWGKAMF-CDPPTN-YPGVNYYWARDYFP---------NFV 612
+++ +P +G K + C T G+++ W +
Sbjct: 223 IYDVVLSPSHGIELSVGE----KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 278
Query: 613 EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKF 672
+ + L + + D G Y+C S + ++V + F
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL---MTKKNSTFVRV------HEKPF 329
Query: 673 PNNFPKTFPEA-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 731
G++VR+ GYP P W + G PL N + +LTI V
Sbjct: 330 VAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKA-GHVLTIMEV 388
Query: 732 KVEDQGEYICRASNDRSALESSVTISIQA------EPNFTIPLTDKHMDNQADLTWTCEA 785
D G Y +N S + S +S+ I D + T TC
Sbjct: 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGT-TQTLTCTV 447
Query: 786 FGVPD-VTYSWFRNGE 800
+ +P W+ E
Sbjct: 448 YAIPPPHHIHWYWQLE 463
Score = 142 bits (360), Expect = 3e-35
Identities = 54/374 (14%), Positives = 99/374 (26%), Gaps = 52/374 (13%)
Query: 454 TIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 513
+P+V + P Q + + + ++C G + + W ++ V
Sbjct: 23 GLPSVSLDLPRLSIQKDILTIKAN-----TTLQITCR--GQRDLDWLWPNNQSGSEQRVE 75
Query: 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG--SIISESVQLAFGFIGEF 571
TL I D G+Y C I FI
Sbjct: 76 VTECSDGLFCKTL-----TIPKV-IGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASV 129
Query: 572 NLKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS 629
+ + +N K + C + V+ R FV + R+
Sbjct: 130 SDQHGVVYITENKNKTVVIPCLGSISNLNVSLCA-RYPEKRFVPDGNRISWDSKKGFTIP 188
Query: 630 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK---- 685
+ AG C + + + + +
Sbjct: 189 SYMISYAGMVFCEAKIND------------ESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 236
Query: 686 -AGDKVRLECVAFGYPVPSYNWT--------------RRGSPLPRNAYFENFNRILTIPN 730
G+K+ L C A ++ R + + F LTI
Sbjct: 237 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 296
Query: 731 VKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA---DLTWTCEAFG 787
V DQG Y C AS+ ++S + + +P + + + + G
Sbjct: 297 VTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLG 356
Query: 788 VPDVTYSWFRNGEL 801
P W++NG
Sbjct: 357 YPPPEIKWYKNGIP 370
Score = 68.6 bits (167), Expect = 5e-12
Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 17/112 (15%)
Query: 179 DIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRL 238
+ +++ P + + I +SC A G P P WFK++
Sbjct: 658 QLTVLERVA--PTITGNLENQTTSIG-----ESIEVSCTASGNPPPQIMWFKDN------ 704
Query: 239 VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ S NL I + ED G Y C+A + G
Sbjct: 705 --ETLVEDSGIVLKDGNRNLTIRRV-RKEDEGLYTCQACSVLGCAKV-EAFF 752
Score = 39.7 bits (92), Expect = 0.004
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 728 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFG 787
+ + + ++C + S SV++ + P +I + L TC G
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL---PRLSIQKDILTIKANTTLQITCR--G 55
Query: 788 VPDVTYSWFRNGE 800
D+ + W N
Sbjct: 56 QRDLDWLWPNNQS 68
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 190 bits (483), Expect = 2e-52
Identities = 65/481 (13%), Positives = 126/481 (26%), Gaps = 84/481 (17%)
Query: 362 DAGNYSCNVQS-KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDK 416
D C + + K +D+ V T EA
Sbjct: 6 DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR---ILTIPNVKMR--GPY------- 464
+ L+ + S W + S L +F+ NR + I + G Y
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125
Query: 465 ----------FIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSYEWFKEDYVQDRLVA 513
I+ + + L C + P P EW D
Sbjct: 126 ATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCD-------- 177
Query: 514 NLIDPLSDKR-FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 572
+ + ++ + ++ C A N+ G + + +
Sbjct: 178 SQGESCKEESPAVVKKEEKVL----HELFGTDIRCCARNELGRECTRLFTI--------D 225
Query: 573 LKRAPEIGNQNW----GKA--MFCDPPTNYPGVNYYWARD--------YFPNFVEEDKRV 618
L + P+ G+ + C G W + YF R
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285
Query: 619 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPK 678
+ + S++ + D G Y+C+ S + + + ++
Sbjct: 286 MIR-ILFAFVSSVARNDTGYYTCSSSKHPSQSAL------VTIVEKGFINATNSSEDYEI 338
Query: 679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE 738
++ YP WT P + ++ GE
Sbjct: 339 D------QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGE 392
Query: 739 YICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 798
YI A ND + T++I+ +P + +C + G P +++W +
Sbjct: 393 YIFHAENDDAQFTKMFTLNIRRKPQVLAEAS--------ASQASCFSDGYPLPSWTWKKC 444
Query: 799 G 799
Sbjct: 445 S 445
Score = 168 bits (426), Expect = 1e-44
Identities = 67/555 (12%), Positives = 137/555 (24%), Gaps = 87/555 (15%)
Query: 257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF 316
N ND V SY + + + Q + G + E ++
Sbjct: 16 NHKNNDS-SVGKSSSYPMVSESPEDLGCALRPQSS-GTVYEAAAVEVDV------SASIT 67
Query: 317 --CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
++ W + + + ++ + + AG Y +QS+
Sbjct: 68 LQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126
Query: 375 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 434
F + + + + P K ++ L C++ P P W
Sbjct: 127 ---TNYTILFTVSI---------RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174
Query: 435 RRGSPLPRNAYFENFNRILTIPNVK--MRGPY----------------FIKQPTDVVFDL 476
S + I L
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTL 234
Query: 477 SKRSIL--NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLII 533
+ + + + C A W E+ + + S R + +
Sbjct: 235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFV 294
Query: 534 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCD-P 592
+ + D G Y C +S ++ GFI N EI + +
Sbjct: 295 SSVAR-NDTGYYTCSSSKHPSQSALVTIV-EKGFINATNSSEDYEI---DQYEEFCFSVR 349
Query: 593 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 652
YP + W ++ + ++ + G Y + ++ + +
Sbjct: 350 FKAYPQIRCTWTFS---RKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTK 406
Query: 653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSP 712
F L + + P+ + C + GYP+PS+ W +
Sbjct: 407 M---FTLNI----------------RRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDK 447
Query: 713 LPR---------------NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757
P F + T+ + C A N ++ ++
Sbjct: 448 SPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507
Query: 758 IQAEPNFTIPLTDKH 772
F KH
Sbjct: 508 SPGPFPFIQDGGTKH 522
Score = 148 bits (375), Expect = 5e-38
Identities = 51/358 (14%), Positives = 103/358 (28%), Gaps = 49/358 (13%)
Query: 457 NVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
++ + + + V D+S ITL N S W + ++L
Sbjct: 43 ALRPQSSGTVYEAAAVEVDVSA-----SITLQVLVDAPGNISCLWVFKH-------SSLN 90
Query: 517 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 576
+++I G Y ++ + + ++ + L+R
Sbjct: 91 CQPHFDLQNRGVVSMVILKM-TETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYTLRR- 147
Query: 577 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA 636
P A+ C + P W +++ V L ++
Sbjct: 148 PYFRKMENQDALVCISESV-PEPIVEWVLCDSQGESCKEESPAVVKKEEK---VLHELFG 203
Query: 637 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE-APKAGDKVRLECV 695
+ C ++++ GR + + T P+ K G+ + + C
Sbjct: 204 TDIRCCARNEL---GRE----------CTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCK 250
Query: 696 AFGY-PVPSYNWTRRGSPLPRNAYFEN----------FNRILTIPNVKVEDQGEYICRAS 744
A W L YFE + +V D G Y C +S
Sbjct: 251 AVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSS 310
Query: 745 NDRSALESSVTISIQAEP--NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
S S ++I + N T D +D + ++ P + +W + +
Sbjct: 311 KHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRK 365
Score = 145 bits (368), Expect = 3e-37
Identities = 71/509 (13%), Positives = 129/509 (25%), Gaps = 105/509 (20%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
P+ + + V D+S ITL N S W + ++L
Sbjct: 46 PQSSGTVYEAAAVEVDVSA-----SITLQVLVDAPGNISCLWVFKH-------SSLNCQP 93
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
+++I G Y ++ + + ++ + L+R P
Sbjct: 94 HFDLQNRGVVSMVILKM-TETQAGEYLLFIQSEATN-YTILFTVSIRNTLLYTLRR-PYF 150
Query: 307 GNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNY 366
A+ C + P W +++ V L ++ +
Sbjct: 151 RKMENQDALVCISESV-PEPIVEWVLCDSQGESCKEESPAVVKKEEK---VLHELFGTDI 206
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE-APKAGDKVRLECVAFG 425
C ++++ GR + + T P+ K G+ + + C A
Sbjct: 207 RCCARNEL---GRE----------CTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVH 253
Query: 426 Y-PVPSYNWTRRGSPLPRNAYFEN----------FNRILTIPNVKMR--GPY-------- 464
W L YFE + +V G Y
Sbjct: 254 VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHP 313
Query: 465 ------FIKQPTDVVFDLSKRSIL----NDITLSCYAGGYPNPSYEWFKEDYVQDRLVAN 514
I + + S + S YP W
Sbjct: 314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR--------- 364
Query: 515 LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 574
++ L G I G Y A N ++ L N++
Sbjct: 365 --KSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQ-FTKMFTL--------NIR 413
Query: 575 RAPEIGNQNWGKAMF--C----DPPTNYPGVNYYWARDYFPNFVEE----------DKRV 618
R P++ A C P P + D PN EE +++V
Sbjct: 414 RKPQV--LAEASASQASCFSDGYPL---PSWTWKKCSDKSPNCTEEITEGVWNRKANRKV 468
Query: 619 FVSYDGALYFSALEQIDAGNYSCNVQSKV 647
F + + + E I C + +
Sbjct: 469 FGQWVSSSTLNMSEAIKGFLVKCCAYNSL 497
Score = 102 bits (256), Expect = 5e-23
Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 9/181 (4%)
Query: 635 DAGNYSCNVQS-KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDK 689
D C + + K +D+ V T EA
Sbjct: 6 DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR---ILTIPNVKVEDQGEYICRASND 746
+ L+ + S W + S L +F+ NR + I + GEY+ ++
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125
Query: 747 RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMT 806
+ T+SI+ +T+ D C + VP+ W G
Sbjct: 126 ATNYTILFTVSIRNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCK 184
Query: 807 D 807
+
Sbjct: 185 E 185
Score = 58.6 bits (141), Expect = 5e-09
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP-----LSDKRFTLSGGNLIINDPR 264
+ SC++ GYP PS+ W K + + + K F + +N
Sbjct: 423 SASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNM-S 481
Query: 265 QVEDRGSYHCKASNKFGSIISE---SVQLAFGFI 295
+ C A N G+ + F FI
Sbjct: 482 EAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFI 515
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 177 bits (451), Expect = 1e-51
Identities = 67/201 (33%), Positives = 95/201 (47%), Gaps = 6/201 (2%)
Query: 564 AFGFIGEFNLKRAPEI-GNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVS 621
G++ F + PE+ + G + CDPP ++P ++Y W + FP F+ DKR FVS
Sbjct: 3 GSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS 62
Query: 622 -YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF 680
+G LY + +E D GNYSC V S F PL P + +P + F
Sbjct: 63 QTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKP--YPADIVVQF 120
Query: 681 PEA-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEY 739
+ G V LEC A G PVP W + P+P A +L I N+++ED+G Y
Sbjct: 121 KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIY 180
Query: 740 ICRASNDRSALESSVTISIQA 760
C A N R + I +QA
Sbjct: 181 ECEAENIRGKDKHQARIYVQA 201
Score = 143 bits (363), Expect = 2e-39
Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 291 AFGFIGEFNLKRAPEI-GNQNWGKAMFCDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVS 348
G++ F + PE+ + G + CDPP ++P ++Y W + FP F+ DKR FVS
Sbjct: 3 GSGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVS 62
Query: 349 -YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF 407
+G LY + +E D GNYSC V S F PL P + +P + F
Sbjct: 63 QTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKP--YPADIVVQF 120
Query: 408 PEA-PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY 464
+ G V LEC A G PVP W + P+P A +L I N+++ G Y
Sbjct: 121 KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIY 180
Score = 79.9 bits (197), Expect = 3e-17
Identities = 29/142 (20%), Positives = 42/142 (29%), Gaps = 21/142 (14%)
Query: 680 FPEAP-----KAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENF----NRILTI 728
PE K G + L C + SY W P+ F N L I
Sbjct: 11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYI 70
Query: 729 PNVKVEDQGEYICRASNDRSALESSVT----------ISIQAEPNFTIPLTDKHMDNQAD 778
NV+ D+G Y C S+ + + + D + +
Sbjct: 71 ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQN 130
Query: 779 LTWTCEAFGVPDVTYSWFRNGE 800
+T C A G P W + E
Sbjct: 131 VTLECFALGNPVPDIRWRKVLE 152
Score = 69.5 bits (170), Expect = 1e-13
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
P + Q DV + + ++TL C+A G P P W K +P+
Sbjct: 111 PYPADIVVQFKDVYALMGQ-----NVTLECFALGNPVPDIRWRKVL-----------EPM 154
Query: 247 -SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
S + SG L I + Q+ED G Y C+A N G ++
Sbjct: 155 PSTAEISTSGAVLKIFNI-QLEDEGIYECEAENIRGK-DKHQARI 197
Score = 65.3 bits (159), Expect = 4e-12
Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 45/205 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNP-SYEWFKEDYVQDRLVANLIDPLS 247
P+ ++ +V + L C +P+ SY W ++ + +
Sbjct: 9 PFPPEERPEVRVKEG-----KGMVLLCDPPYHFPDDLSYRWLLNEFP-------VFITMD 56
Query: 248 DKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
+RF + GNL I + D+G+Y C S+ + S + I E K P
Sbjct: 57 KRRFVSQTNGNLYIANVEA-SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYP-- 113
Query: 307 GNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVSY 349
A + P + W + +
Sbjct: 114 -------ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKV---LEPMPSTAEISTS 163
Query: 350 DGALYFSALEQIDAGNYSCNVQSKV 374
L ++ D G Y C ++
Sbjct: 164 GAVLKIFNIQLEDEGIYECEAENIR 188
Score = 65.3 bits (159), Expect = 4e-12
Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 45/205 (21%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNP-SYEWFKEDYVQDRLVANLIDPLS 520
P+ ++ +V + L C +P+ SY W ++ + +
Sbjct: 9 PFPPEERPEVRVKEG-----KGMVLLCDPPYHFPDDLSYRWLLNEFP-------VFITMD 56
Query: 521 DKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 579
+RF + GNL I + D+G+Y C S+ + S + I E K P
Sbjct: 57 KRRFVSQTNGNLYIANVEA-SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYP-- 113
Query: 580 GNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVSY 622
A + P + W + +
Sbjct: 114 -------ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKV---LEPMPSTAEISTS 163
Query: 623 DGALYFSALEQIDAGNYSCNVQSKV 647
L ++ D G Y C ++
Sbjct: 164 GAVLKIFNIQLEDEGIYECEAENIR 188
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 175 bits (445), Expect = 4e-48
Identities = 59/441 (13%), Positives = 112/441 (25%), Gaps = 70/441 (15%)
Query: 362 DAGNYSCNVQS-KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDK 416
D C + + K +D+ V T EA
Sbjct: 6 DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR---ILTIPNVKMR--GPY------- 464
+ L+ + S W + S L +F+ NR + I + G Y
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125
Query: 465 ----------FIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSYEWFKEDYVQDRLVA 513
I+ + + L C + P P EW D +
Sbjct: 126 ATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCD-------S 178
Query: 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE--SVQLAFGFIGEF 571
+ + ++++ C A N+ G + ++ L
Sbjct: 179 QGESCKEESPAVVKKEEKVLHE----LFGTDIRCCARNELGRECTRLFTIDLNQTPQTTL 234
Query: 572 NLKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARD--------YFPNFVEEDKRVFVS 621
G+ ++ C G W + YF R +
Sbjct: 235 PQLFLKV------GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIR 288
Query: 622 YDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP 681
+ S++ + D G Y+C+ S + + + ++
Sbjct: 289 -ILFAFVSSVARNDTGYYTCSSSKHPSQSAL------VTIVEKGFINATNSSEDYEI--- 338
Query: 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 741
++ YP WT P + ++ GEYI
Sbjct: 339 ---DQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIF 395
Query: 742 RASNDRSALESSVTISIQAEP 762
A ND + T++I++
Sbjct: 396 HAENDDAQFTKMFTLNIRSGT 416
Score = 148 bits (374), Expect = 1e-38
Identities = 46/368 (12%), Positives = 97/368 (26%), Gaps = 55/368 (14%)
Query: 450 NRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD 509
+ ++ + + + V D+S ITL N S W +
Sbjct: 36 SPEDLGCALRPQSSGTVYEAAAVEVDVSA-----SITLQVLVDAPGNISCLWVFKH---- 86
Query: 510 RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFG 566
++L +++I G Y ++ + S++
Sbjct: 87 ---SSLNCQPHFDLQNRGVVSMVILKM-TETQAGEYLLFIQSEATNYTILFTVSIRNTLL 142
Query: 567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 626
+ R E + + P W +++ V
Sbjct: 143 YTLRRPYFRKME------NQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196
Query: 627 YFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE-APK 685
++ + C ++++ GR + + T P+ K
Sbjct: 197 VLH---ELFGTDIRCCARNEL---GRE----------CTRLFTIDLNQTPQTTLPQLFLK 240
Query: 686 AGDKVRLECVA-FGYPVPSYNWTRRGSPLPRNAYFENF----------NRILTIPNVKVE 734
G+ + + C A W L YFE + +V
Sbjct: 241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300
Query: 735 DQGEYICRASNDRSALESSVTISIQAEPNFTIPL--TDKHMDNQADLTWTCEAFGVPDVT 792
D G Y C +S S S ++I + D +D + ++ P +
Sbjct: 301 DTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIR 357
Query: 793 YSWFRNGE 800
+W + +
Sbjct: 358 CTWTFSRK 365
Score = 144 bits (365), Expect = 2e-37
Identities = 49/412 (11%), Positives = 97/412 (23%), Gaps = 82/412 (19%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
P+ + + V D+S ITL N S W + ++L
Sbjct: 46 PQSSGTVYEAAAVEVDVSA-----SITLQVLVDAPGNISCLWVFKH-------SSLNCQP 93
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRA 303
+++I G Y ++ + S++ + R
Sbjct: 94 HFDLQNRGVVSMVILKM-TETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRK 152
Query: 304 PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDA 363
E + + P W +++ V ++
Sbjct: 153 ME------NQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH---ELFG 203
Query: 364 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE-APKAGDKVRLECV 422
+ C ++++ GR + + T P+ K G+ + + C
Sbjct: 204 TDIRCCARNEL---GRE----------CTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCK 250
Query: 423 A-FGYPVPSYNWTRRGSPLPRNAYFENF----------NRILTIPNVKM--RGPY----- 464
A W L YFE + +V G Y
Sbjct: 251 AVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSS 310
Query: 465 ---------FIKQPTDVVFDLSKRSIL----NDITLSCYAGGYPNPSYEWFKEDYVQDRL 511
I + + S + S YP W
Sbjct: 311 KHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR------ 364
Query: 512 VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+++ +G ++ + G Y A N ++ L
Sbjct: 365 ----KSFPCEQKGLDNGYSISKFCNHK-HQPGEYIFHAENDDAQ-FTKMFTL 410
Score = 125 bits (315), Expect = 5e-31
Identities = 43/420 (10%), Positives = 100/420 (23%), Gaps = 63/420 (15%)
Query: 257 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF 316
N ND V SY + + + Q + G + E ++
Sbjct: 16 NHKNND-SSVGKSSSYPMVSESPEDLGCALRPQSS-GTVYEAAAVEVDV------SASIT 67
Query: 317 --CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
++ W + + + ++ + + AG Y +QS+
Sbjct: 68 LQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126
Query: 375 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 434
F + + + + P K ++ L C++ P P W
Sbjct: 127 ---TNYTILFTVSI---------RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174
Query: 435 RRGSPLP---RNAYFENFNRILTIPNVK----------------------MRGPYFIKQP 469
S + + +
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTL 234
Query: 470 TDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG 528
+ + + + + C A W E+ + + S R +
Sbjct: 235 PQLFLKVGEP-----LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRI 289
Query: 529 GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAM 588
++ + D G Y C +S ++ G N + E + +
Sbjct: 290 LFAFVSSVAR-NDTGYYTCSSSKHPSQSALVTIVEK----GFINATNSSEDYEIDQYEEF 344
Query: 589 FCD-PPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
YP + W ++ + ++ + G Y + ++
Sbjct: 345 CFSVRFKAYPQIRCTWTFS---RKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401
Score = 113 bits (284), Expect = 5e-27
Identities = 34/274 (12%), Positives = 69/274 (25%), Gaps = 25/274 (9%)
Query: 530 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF 589
N ND V SY + + + Q + G + E ++
Sbjct: 16 NHKNND-SSVGKSSSYPMVSESPEDLGCALRPQSS-GTVYEAAAVEVDV------SASIT 67
Query: 590 --CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
++ W + + + ++ + + AG Y +QS+
Sbjct: 68 LQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126
Query: 648 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 707
F + + + + P K ++ L C++ P P W
Sbjct: 127 ---TNYTILFTVSI---------RNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174
Query: 708 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 767
S + + C A N+ E + +I
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNEL-GRECTRLFTIDLNQTPQTT 233
Query: 768 LTDKHMDNQADLTWTCEA-FGVPDVTYSWFRNGE 800
L + L C+A +W +
Sbjct: 234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENK 267
Score = 111 bits (279), Expect = 3e-26
Identities = 30/181 (16%), Positives = 53/181 (29%), Gaps = 9/181 (4%)
Query: 635 DAGNYSCNVQS-KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDK 689
D C + + K +D+ V T EA
Sbjct: 6 DLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSAS 65
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR---ILTIPNVKVEDQGEYICRASND 746
+ L+ + S W + S L +F+ NR + I + GEY+ ++
Sbjct: 66 ITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSE 125
Query: 747 RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMT 806
+ T+SI+ +T+ D C + VP+ W G
Sbjct: 126 ATNYTILFTVSIRNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCK 184
Query: 807 D 807
+
Sbjct: 185 E 185
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 154 bits (392), Expect = 4e-42
Identities = 65/325 (20%), Positives = 102/325 (31%), Gaps = 43/325 (13%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P FIK+P D + + C A G P P W K+ ++ +
Sbjct: 7 PRFIKEPKDQIGVSGG-----VASFVCQATGDPKPRVTWNKKG--------KKVNSQRFE 53
Query: 523 RFTL---SGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEF-NLKR 575
+G L I R D Y C A N G I +V F N+
Sbjct: 54 TIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113
Query: 576 APEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALE 632
P++ + M C + P W +D+ P + + R+ GAL + E
Sbjct: 114 GPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE 172
Query: 633 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AG 687
+ D G Y C + + ++V F P G
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRVQN------------VAPRFSILPMSHEIMPG 220
Query: 688 DKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDR 747
V + CVA G P+P W + L + V+D Y C A +
Sbjct: 221 GNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGR--NVLELTDVKDSANYTCVAMSSL 278
Query: 748 SALESSVTISIQAEPNFTIPLTDKH 772
+E+ I++++ P H
Sbjct: 279 GVIEAVAQITVKSLPKAGTKHHHHH 303
Score = 121 bits (306), Expect = 1e-30
Identities = 60/290 (20%), Positives = 91/290 (31%), Gaps = 41/290 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P FIK+P D + + C A G P P W K+ ++ +
Sbjct: 7 PRFIKEPKDQIGVSGG-----VASFVCQATGDPKPRVTWNKKG--------KKVNSQRFE 53
Query: 250 RFTL---SGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEF-NLKR 302
+G L I R D Y C A N G I +V F N+
Sbjct: 54 TIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113
Query: 303 APEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALE 359
P++ + M C + P W +D+ P + + R+ GAL + E
Sbjct: 114 GPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSE 172
Query: 360 QIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AG 414
+ D G Y C + + ++V F P G
Sbjct: 173 ETDQGKYECVATNSAGVRYSSPANLYVRVQN------------VAPRFSILPMSHEIMPG 220
Query: 415 DKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPY 464
V + CVA G P+P W + L +L + +VK Y
Sbjct: 221 GNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANY 270
Score = 106 bits (265), Expect = 3e-25
Identities = 41/200 (20%), Positives = 70/200 (35%), Gaps = 33/200 (16%)
Query: 635 DAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----A 686
D Y C N +++ + L V + + P+ FP P+
Sbjct: 75 DENVYECVAQNSVGEITVHAK------LTVLR-----EDQLPSGFP-NIDMGPQLKVVER 122
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI----LTIPNVKVEDQGEYICR 742
+ C A G P P W + P+ +A ++ L I + + DQG+Y C
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 743 ASNDRSALESS---VTISIQAE-PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 798
A+N SS + + +Q P F+I + ++ TC A G P W +
Sbjct: 183 ATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG 242
Query: 799 GEL-----GHQMTDLLLKAV 813
E + +L+
Sbjct: 243 AEDLTPEDDMPVGRNVLELT 262
Score = 100 bits (250), Expect = 2e-23
Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 13/127 (10%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLP-----RNAYFENFNRILTIPNVKV-EDQGEYI 740
G C A G P P W ++G + + E+ +L I ++ D+ Y
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYE 80
Query: 741 CRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
C A N + +++ E PN + K ++ T C A G PD
Sbjct: 81 CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEI 140
Query: 794 SWFRNGE 800
+WF++
Sbjct: 141 TWFKDFL 147
Score = 98.0 bits (244), Expect = 2e-22
Identities = 56/287 (19%), Positives = 83/287 (28%), Gaps = 82/287 (28%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP-----RNAYFENFNRILTIPNVKM-------- 460
G C A G P P W ++G + + E+ +L I ++
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYE 80
Query: 461 --------------------------RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY 494
P P V + ++ T+ C A G
Sbjct: 81 CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTR-----TATMLCAASGN 135
Query: 495 PNPSYEWFKEDYVQDRLVANLIDP-LSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNK 552
P+P WFK+ +DP S+ R L G L I + D+G Y C A+N
Sbjct: 136 PDPEITWFKDF--------LPVDPSASNGRIKQLRSGALQIESSEE-TDQGKYECVATNS 186
Query: 553 FGSIISESVQL-------AFGFIGEFNLKRAPEIGNQNWGKAMF-C----DPPTNYPGVN 600
G S L A F G G C P P V
Sbjct: 187 AGVRYSSPANLYVRVQNVAPRFSILPMSHEIMP-G----GNVNITCVAVGSPM---PYVK 238
Query: 601 YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
W + + + + V G + D+ NY+C S +
Sbjct: 239 --WMQGAED--LTPEDDMPV---GRNVLELTDVKDSANYTCVAMSSL 278
Score = 75.6 bits (186), Expect = 5e-15
Identities = 45/208 (21%), Positives = 64/208 (30%), Gaps = 43/208 (20%)
Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 240
P P V + ++ T+ C A G P+P WFK+
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTR-----TATMLCAASGNPDPEITWFKDF-------- 146
Query: 241 NLIDP-LSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL-------A 291
+DP S+ R L G L I + D+G Y C A+N G S L A
Sbjct: 147 LPVDPSASNGRIKQLRSGALQIESSEE-TDQGKYECVATNSAGVRYSSPANLYVRVQNVA 205
Query: 292 FGFIGEFNLKRAPEIGNQNWGKAMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVF 346
F G G C P P V W + + + +
Sbjct: 206 PRFSILPMSHEIMP-G----GNVNITCVAVGSPM---PYVK--WMQGAED--LTPEDDMP 253
Query: 347 VSYDGALYFSALEQIDAGNYSCNVQSKV 374
V G + D+ NY+C S +
Sbjct: 254 V---GRNVLELTDVKDSANYTCVAMSSL 278
Score = 58.7 bits (142), Expect = 2e-09
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 19/101 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F P ++ ++C A G P P +W + + P +
Sbjct: 206 PRFSILPMSHE-----IMPGGNVNITCVAVGSPMPYVKWMQGA--------EDLTP--ED 250
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ L + D V+D +Y C A + G I Q+
Sbjct: 251 DMPVGRNVLELTD---VKDSANYTCVAMSSLGV-IEAVAQI 287
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 143 bits (362), Expect = 3e-38
Identities = 54/324 (16%), Positives = 96/324 (29%), Gaps = 62/324 (19%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
+ V + + +C A G P S +W+ + +
Sbjct: 5 LQVTISLSKVELSVGE-----SKFFTCTAIGEP-ESIDWYNPQ--------GEKIISTQR 50
Query: 523 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 579
G L I + +ED G Y C+A++ G +V L + +
Sbjct: 51 VVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKGQTQEATVVL--------EIYQKLT- 100
Query: 580 GNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVSY 622
F + + P W D R +
Sbjct: 101 ---------FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA 151
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
+ L + + D G Y C + + + V + N T
Sbjct: 152 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDII-VIVNVPPAISMPQKSFN--ATAER 208
Query: 683 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVEDQGEYI 740
G+++ C A G P P+ +W R G + N + + N LT+ N+ D G Y+
Sbjct: 209 ----GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYV 264
Query: 741 CRASNDRSALESSVTISIQAEPNF 764
CRA+N E + + + +
Sbjct: 265 CRATNKAGEDEKQAFLQVFVQHHH 288
Score = 110 bits (277), Expect = 6e-27
Identities = 49/299 (16%), Positives = 85/299 (28%), Gaps = 64/299 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+ V + + +C A G P S +W+ + +
Sbjct: 5 LQVTISLSKVELSVGE-----SKFFTCTAIGEP-ESIDWYNPQ--------GEKIISTQR 50
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 306
G L I + +ED G Y C+A++ G +V L + +
Sbjct: 51 VVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKGQTQEATVVL--------EIYQKLT- 100
Query: 307 GNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVSY 349
F + + P W D R +
Sbjct: 101 ---------FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA 151
Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
+ L + + D G Y C + + + V + N T
Sbjct: 152 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDII-VIVNVPPAISMPQKSFN--ATAER 208
Query: 410 APKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKM--RGPY 464
G+++ C A G P P+ +W R G + N + + N LT+ N+ GPY
Sbjct: 209 ----GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPY 263
Score = 109 bits (273), Expect = 2e-26
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 5/120 (4%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYIC 741
G+ C A G P + +G + E LTI N +ED G Y C
Sbjct: 18 VGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 77
Query: 742 RASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+A++ + E++V + I + F ++ + D C P SW + E
Sbjct: 78 QATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 137
Score = 107 bits (269), Expect = 7e-26
Identities = 47/274 (17%), Positives = 76/274 (27%), Gaps = 59/274 (21%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVK--------- 459
G+ C A G P + +G + E LTI N
Sbjct: 18 VGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRC 77
Query: 460 ----MRG--------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW 501
+G F + + F D + C P P+ W
Sbjct: 78 QATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQG-----EDAEVVCRVSSSPAPAVSW 132
Query: 502 FKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 560
+ + +SD RF L+ NL I + D G Y C+ + I
Sbjct: 133 LYHN--------EEVTTISDNRFAMLANNNLQILNI-NKSDEGIYRCEGRVEARGEIDFR 183
Query: 561 VQLAFGFIG-EFNLKRAPEIGNQNWGK-AMF-C----DPPTNYPGVNYYWARDYFPNFVE 613
+ + ++ + G+ F C P P + W R+ E
Sbjct: 184 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPE---PAI--SWFRNGKL-IEE 237
Query: 614 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
+K + + L + D G Y C +K
Sbjct: 238 NEKYILKGSNTELTVRNIINSDGGPYVCRATNKA 271
Score = 107 bits (268), Expect = 8e-26
Identities = 42/208 (20%), Positives = 70/208 (33%), Gaps = 38/208 (18%)
Query: 612 VEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQ----SKVSDTGRNGPFFPLKVFPH 664
+ +RV V +G L DAG Y C T L+++
Sbjct: 45 IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVV------LEIYQ- 97
Query: 665 SNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL---PRN 716
TF E G+ + C P P+ +W + N
Sbjct: 98 ------------KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN 145
Query: 717 AYFENFNRILTIPNVKVEDQGEYICRASND--RSALESSVTISIQAEPNFTIP--LTDKH 772
+ N L I N+ D+G Y C + + + + P ++P +
Sbjct: 146 RFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT 205
Query: 773 MDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ ++T++C A G P+ SWFRNG+
Sbjct: 206 AERGEEMTFSCRASGSPEPAISWFRNGK 233
Score = 100 bits (251), Expect = 2e-23
Identities = 50/265 (18%), Positives = 76/265 (28%), Gaps = 69/265 (26%)
Query: 339 VEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQ----SKVSDTGRNGPFFPLKVFPH 391
+ +RV V +G L DAG Y C T L+++
Sbjct: 45 IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVV------LEIYQ- 97
Query: 392 SNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL---PRN 443
TF E G+ + C P P+ +W + N
Sbjct: 98 ------------KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN 145
Query: 444 AYFENFNRILTIPNVKM--RGPYF-------------------IKQPTDVVFDLSKRSIL 482
+ N L I N+ G Y + P + +
Sbjct: 146 RFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT 205
Query: 483 ----NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQ 538
++T SC A G P P+ WF+ LI+ S L + +
Sbjct: 206 AERGEEMTFSCRASGSPEPAISWFRNG--------KLIEENEKYILKGSNTELTVRNI-I 256
Query: 539 VEDRGSYHCKASNKFGSIISESVQL 563
D G Y C+A+NK G + L
Sbjct: 257 NSDGGPYVCRATNKAGE-DEKQAFL 280
Score = 82.6 bits (204), Expect = 2e-17
Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 28/193 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + + F D + C P P+ W + + +SD
Sbjct: 99 LTFREVVSPQEFKQG-----EDAEVVCRVSSSPAPAVSWLYHN--------EEVTTISDN 145
Query: 250 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAPEIG 307
RF L+ NL I + D G Y C+ + I + + ++ +
Sbjct: 146 RFAMLANNNLQILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 204
Query: 308 NQNWGK-AMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI 361
G+ F C P P + W R+ E +K + + L +
Sbjct: 205 TAERGEEMTFSCRASGSPE---PAI--SWFRNGKL-IEENEKYILKGSNTELTVRNIINS 258
Query: 362 DAGNYSCNVQSKV 374
D G Y C +K
Sbjct: 259 DGGPYVCRATNKA 271
Score = 64.8 bits (158), Expect = 2e-11
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 23/136 (16%)
Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
+ CE + R DI +P ++ + + + ++T
Sbjct: 168 YRCEGR--------VEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE-----EMTF 214
Query: 215 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 274
SC A G P P+ WF+ LI+ S L + + D G Y C
Sbjct: 215 SCRASGSPEPAISWFRNG--------KLIEENEKYILKGSNTELTVRNI-INSDGGPYVC 265
Query: 275 KASNKFGSIISESVQL 290
+A+NK G + L
Sbjct: 266 RATNKAGE-DEKQAFL 280
Score = 29.0 bits (65), Expect = 5.7
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 760 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 801
A TI L+ + +TC A G P+ + GE
Sbjct: 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEK 44
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 148 bits (374), Expect = 6e-38
Identities = 69/483 (14%), Positives = 116/483 (24%), Gaps = 89/483 (18%)
Query: 362 DAGNYSCNVQSKVS-DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGD 415
A ++ C + + TG + P P + GD
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPS-------------PPSIHPGKSDLIVRVGD 52
Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY--------- 464
++RL C G+ WT EN + G Y
Sbjct: 53 EIRLLCTDPGFV----KWTFEILDETN----ENKQNEWITEKAEATNTGKYTCTNKHGLS 104
Query: 465 -----FIKQPTDVVFDLSKRSIL--NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 517
F++ P + ND + C +Y
Sbjct: 105 NSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQ--------GKPL 156
Query: 518 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP 577
P + ++I ++ R HC + S++SE L + +
Sbjct: 157 PKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSV 216
Query: 578 EIGNQ--NWGKA--MFCDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDGALY 627
+ G+ + C V W R+ L
Sbjct: 217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT 276
Query: 628 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-KA 686
S+ D+G + C + L+V F N FP
Sbjct: 277 ISSARVNDSGVFMCYANNTFGSANVT---TTLEVVDKG------FINIFPMINTTVFVND 327
Query: 687 GDKVRLECVAFGYPVPS-YNWTRRGSPLP---------RNAYFENFNRILTIPNVKVEDQ 736
G+ V L +P P W N + L + +K +
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEG 387
Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
G Y SN + + + +P + C A G P+ T W+
Sbjct: 388 GTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVN------GMLQCVAAGFPEPTIDWY 441
Query: 797 RNG 799
Sbjct: 442 FCP 444
Score = 135 bits (341), Expect = 1e-33
Identities = 50/355 (14%), Positives = 92/355 (25%), Gaps = 55/355 (15%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P +D++ + ++I L C G+ +W + D+
Sbjct: 37 PSIHPGKSDLIVRVG-----DEIRLLCTDPGFV----KWTF--------------EILDE 73
Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ 582
I + + G Y C + + I V+ + L G +
Sbjct: 74 TNENKQNEWITEKA-EATNTGKYTCTNKHGLSNSIYVFVRDP----AKLFLVDRSLYGKE 128
Query: 583 NWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYF-SALEQIDAGNYSC 641
+ + C P V Y + + +D R + S C
Sbjct: 129 DNDTLVRCPLTD--PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHC 186
Query: 642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 701
+V F LKV P P + G++ + C
Sbjct: 187 SV--DQEGKSVLSEKFILKVRPAFK----AVPVVSVSKASYLLREGEEFTVTCTIKDVSS 240
Query: 702 P-SYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKVEDQGEYICRASNDRSALE 751
W R S + LTI + +V D G ++C A+N +
Sbjct: 241 SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN 300
Query: 752 SSVTISIQAEPNFTIPLTDKHMDNQA-----DLTWTCEAFGVPD-VTYSWFRNGE 800
+ T+ + + I + ++ E P W
Sbjct: 301 VTTTLEVVDKG--FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNR 353
Score = 134 bits (338), Expect = 2e-33
Identities = 74/498 (14%), Positives = 138/498 (27%), Gaps = 106/498 (21%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 389
W + + E + G Y+C + +S++ + VF
Sbjct: 66 WTFEILD-------ETNENKQNEWITEKAEATNTGKYTCTNKHGLSNS--------IYVF 110
Query: 390 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNA-YFE 447
F K + + C V +Y+ +G PLP++ +
Sbjct: 111 VRD------PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIP 164
Query: 448 NFNRILTIPNVKM---RGPYF----------------------IKQPTDVVFDLSKRSIL 482
+ + I +VK R K V + +
Sbjct: 165 DPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLR 224
Query: 483 --NDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 539
+ T++C + W +E+ Q +L L I+ +V
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKREN-SQTKLQEKYNSWHHGDFNYERQATLTISSA-RV 282
Query: 540 EDRGSYHCKASNKFGSIISESVQL---AFGFIGEFNLKRAPEIGNQNWGKAMFC-----D 591
D G + C A+N FGS + + L GFI F + N +
Sbjct: 283 NDSGVFMCYANNTFGSA-NVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP 341
Query: 592 PPTNYPGVNYYWARD------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS 645
P + W + ++ + + + Y L+ + L+ + G Y+ V +
Sbjct: 342 KPEHQ-----QWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSN 396
Query: 646 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN 705
+ F + V N + L+CVA G+P P+ +
Sbjct: 397 SDVNAAIA---FNVYV-------------NTKPEILTYDR-LVNGMLQCVAAGFPEPTID 439
Query: 706 WTRRGSPLPRN----------------AYFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
W R F +I + + G C+A ND
Sbjct: 440 WYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGK 499
Query: 750 LESSVTISIQAEPNFTIP 767
+ + + I
Sbjct: 500 TSAYFNFAFKGNNKEQIH 517
Score = 128 bits (322), Expect = 3e-31
Identities = 61/511 (11%), Positives = 125/511 (24%), Gaps = 103/511 (20%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P +D++ + ++I L C G+ +W + D+
Sbjct: 37 PSIHPGKSDLIVRVG-----DEIRLLCTDPGFV----KWTF--------------EILDE 73
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ 309
I + + G Y C + + I V+ + L G +
Sbjct: 74 TNENKQNEWITEKA-EATNTGKYTCTNKHGLSNSIYVFVRDP----AKLFLVDRSLYGKE 128
Query: 310 NWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYF-SALEQIDAGNYSC 368
+ + C P V Y + + +D R + S C
Sbjct: 129 DNDTLVRCPLTD--PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHC 186
Query: 369 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 428
+V F LKV P P + G++ + C
Sbjct: 187 SV--DQEGKSVLSEKFILKVRPAFK----AVPVVSVSKASYLLREGEEFTVTCTIKDVSS 240
Query: 429 P-SYNWTRRGSPLPRNAYFE---------NFNRILTIPNVKM--RGPY------------ 464
W R S + LTI + ++ G +
Sbjct: 241 SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN 300
Query: 465 ------FIKQPTDVVFDLSKRSIL----NDITLSCYAGGYPNPS-YEWFKEDYVQDRLVA 513
+ + +F + ++ ++ L +P P +W +
Sbjct: 301 VTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN-RTFTDKW 359
Query: 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL 573
++ L + + + G+Y SN + + + + +
Sbjct: 360 EDYPKSENESNIRYVSELHLTRL-KGTEGGTYTFLVSNSDVN-AAIAFNV--------YV 409
Query: 574 KRAPEIGNQNWGK--AMFC----DPPTNYPGVNYYWARDYFPN-----------FVEEDK 616
PEI + + C P P +++Y+ +
Sbjct: 410 NTKPEILTYDRLVNGMLQCVAAGFPE---PTIDWYFCPGTEQRCSASVLPVDVQTLNSSG 466
Query: 617 RVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
F + G C + V
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDV 497
Score = 120 bits (302), Expect = 8e-29
Identities = 63/431 (14%), Positives = 108/431 (25%), Gaps = 88/431 (20%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
+ P + + + D ND + C +Y
Sbjct: 112 RDPAKLFLVDRSLYGKED-------NDTLVRCPLTDPEVTNYSLKGCQ--------GKPL 156
Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP 304
P + ++I ++ R HC + S++SE L + +
Sbjct: 157 PKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSV 216
Query: 305 EIGNQ--NWGKA--MFCDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDGALY 354
+ G+ + C V W R+ L
Sbjct: 217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT 276
Query: 355 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-KA 413
S+ D+G + C + L+V F N FP
Sbjct: 277 ISSARVNDSGVFMCYANNTFGSANVT---TTLEVVDKG------FINIFPMINTTVFVND 327
Query: 414 GDKVRLECVAFGYPVPS-YNWTRRGSPLP---------RNAYFENFNRILTIPNVKM--R 461
G+ V L +P P W N + L + +K
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEG 387
Query: 462 GPY------------------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP 497
G Y + V + L C A G+P P
Sbjct: 388 GTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLV-----------NGMLQCVAAGFPEP 436
Query: 498 SYEWFKEDYVQDRLVANLI--DPLSDKRFTLSGGNLIIN---DPRQVEDRGSYHCKASNK 552
+ +W+ + R A+++ D + G L++ D + G+ CKA N
Sbjct: 437 TIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYND 496
Query: 553 FGSIISESVQL 563
G S
Sbjct: 497 VGK-TSAYFNF 506
Score = 85.9 bits (212), Expect = 1e-17
Identities = 45/305 (14%), Positives = 87/305 (28%), Gaps = 54/305 (17%)
Query: 155 FICEASIQKLHYLLNDDRTYQ-YGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDIT 213
C + ++ ++ P + + + T
Sbjct: 184 LHCSVD--------QEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGE-----EFT 230
Query: 214 LSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSY 272
++C + W +E+ Q +L L I+ +V D G +
Sbjct: 231 VTCTIKDVSSSVYSTWKREN-SQTKLQEKYNSWHHGDFNYERQATLTISSA-RVNDSGVF 288
Query: 273 HCKASNKFGSIISESVQL---AFGFIGEFNLKRAPEIGNQNWGKAMFC-----DPPTNYP 324
C A+N FGS + + L GFI F + N + P +
Sbjct: 289 MCYANNTFGSA-NVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQ- 346
Query: 325 GVNYYWARD------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTG 378
W + ++ + + + Y L+ + L+ + G Y+ V + +
Sbjct: 347 ----QWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAA 402
Query: 379 RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS 438
F + V N + L+CVA G+P P+ +W
Sbjct: 403 IA---FNVYV-------------NTKPEILTYDR-LVNGMLQCVAAGFPEPTIDWYFCPG 445
Query: 439 PLPRN 443
R
Sbjct: 446 TEQRC 450
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 143 bits (361), Expect = 7e-38
Identities = 55/331 (16%), Positives = 96/331 (29%), Gaps = 54/331 (16%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLS 520
GP+F++ + V ++ L C W+K++ I
Sbjct: 7 GPHFVEYLSWEVTGEC------NVLLKCKVANIKKETHIVWYKDE--------REISV-- 50
Query: 521 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 575
D++ G L+I + +D G Y + G S + + E K
Sbjct: 51 DEKHDFKDGICTLLITEF-SKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKI 109
Query: 576 APEIGNQNW-----GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALY 627
A + G ++ + W+ + + RV G L
Sbjct: 110 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGVTGEQIWLQ 167
Query: 628 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF----PHSNFQQLKFP----NNFPKT 679
+ D G Y + + L ++ FQ+LK N +
Sbjct: 168 INEPTPNDKGKYVMELFDGK---TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARV 224
Query: 680 FPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIP 729
P G + L C +G P P +W + L + + TI
Sbjct: 225 LGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTIN 284
Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQA 760
V D G+Y N + S T+S+
Sbjct: 285 GVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315
Score = 116 bits (293), Expect = 7e-29
Identities = 50/310 (16%), Positives = 87/310 (28%), Gaps = 56/310 (18%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY-PNPSYEWFKEDYVQDRLVANLIDPLS 247
GP+F++ + V ++ L C W+K++ I
Sbjct: 7 GPHFVEYLSWEVTGEC------NVLLKCKVANIKKETHIVWYKDE--------REISV-- 50
Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 302
D++ G L+I + +D G Y + G S + + E K
Sbjct: 51 DEKHDFKDGICTLLITEF-SKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKI 109
Query: 303 APEIGNQNW-----GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALY 354
A + G ++ + W+ + + RV G L
Sbjct: 110 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGVTGEQIWLQ 167
Query: 355 FSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF----PHSNFQQLKFP----NNFPKT 406
+ D G Y + + L ++ FQ+LK N +
Sbjct: 168 INEPTPNDKGKYVMELFDGK---TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARV 224
Query: 407 FPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIP 456
P G + L C +G P P +W + L + + TI
Sbjct: 225 LGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTIN 284
Query: 457 NVKMR--GPY 464
V G Y
Sbjct: 285 GVSTADSGKY 294
Score = 97.7 bits (243), Expect = 2e-22
Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 17/139 (12%)
Query: 679 TFPEAPK----AGDKVRLECVAFGY-PVPSYNWTRRGSPLPRNA--YFENFNRILTIPNV 731
F E V L+C W + + + F++ L I
Sbjct: 9 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEF 68
Query: 732 KVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA------ 785
+D G Y +DR +S + + +A + + K + DL A
Sbjct: 69 SKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLY 128
Query: 786 ----FGVPDVTYSWFRNGE 800
+ V D+ +W NG
Sbjct: 129 SFVTYYVEDLKVNWSHNGS 147
Score = 86.9 bits (215), Expect = 1e-18
Identities = 35/231 (15%), Positives = 63/231 (27%), Gaps = 31/231 (13%)
Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 656
+ W +D ++K F L + + DAG Y ++ G++
Sbjct: 35 KETHIVWYKDERE-ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR---GKDKSR 90
Query: 657 FPLKVFPHSNFQQLKFPNNFPKTFPEAPK--AGDKVRLECVAFGYPVPSYNWTRRGSPLP 714
L + A V + NW+ GS +
Sbjct: 91 LKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR 150
Query: 715 RNA----YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTD 770
+ L I D+G+Y+ + ++ + +V +S QA
Sbjct: 151 YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQR 210
Query: 771 KHMDNQAD---------------------LTWTCEAFGVPDVTYSWFRNGE 800
A+ L TC +G P SW +N +
Sbjct: 211 LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEK 261
Score = 62.6 bits (152), Expect = 1e-10
Identities = 30/216 (13%), Positives = 59/216 (27%), Gaps = 43/216 (19%)
Query: 190 PYFIKQPTDVVF----DLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLID 244
+ + + DL +S I L + + W + I
Sbjct: 99 KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG--------SAIR 150
Query: 245 PLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFN 299
+ ++G L IN+P D+G Y + + S Q EF
Sbjct: 151 YSDRVKTGVTGEQIWLQINEP-TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ 209
Query: 300 LKRAPEIGNQNWGKAMFCDPPTNY-----------------PGVNYYWARDYFPNFVEED 342
+ I +N + + P P W ++ + D
Sbjct: 210 RLKQAAIAEKNRAR-VLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA--LASD 266
Query: 343 KRVFVSYD----GALYFSALEQIDAGNYSCNVQSKV 374
+ ++ + + D+G Y V++K
Sbjct: 267 DHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY 302
Score = 56.5 bits (136), Expect = 1e-08
Identities = 22/103 (21%), Positives = 28/103 (27%), Gaps = 17/103 (16%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
R P V K + L+C G P P W K + +
Sbjct: 220 NRARVLGGLPDVVTIQEGK-----ALNLTCNVWGDPPPEVSWLKNE--------KALASD 266
Query: 247 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 286
G IN D G Y NK+GS S+
Sbjct: 267 DHCNLKFEAGRTAYFTINGV-STADSGKYGLVVKNKYGSETSD 308
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 140 bits (355), Expect = 2e-37
Identities = 58/320 (18%), Positives = 104/320 (32%), Gaps = 50/320 (15%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPL 519
R P+ + + C G + WF +
Sbjct: 1 RVLQVDIVPSQGEISVGE-----SKFFLCQVAGDAKDKDISWFSPN--------GEKLSP 47
Query: 520 SDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 574
+ +R ++ L I + ++D G Y C + + G+ +V + +
Sbjct: 48 NQQRISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNV--------KIF 98
Query: 575 RAPEIGNQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 626
+ N G+ + CD + W +++D R V + L
Sbjct: 99 QKLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 627 YFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA 686
+++ D G Y C + + V Q + N T
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQ-VIVNVPPTVQARQSIVN--ATANL---- 210
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYI 740
G V L C A G+P P+ +WT+ G P+ F + + LTI NV D+ EY+
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYV 270
Query: 741 CRASNDRSALESSVTISIQA 760
C A N ++S+ + + A
Sbjct: 271 CIAENKAGEQDASIHLKVFA 290
Score = 113 bits (285), Expect = 6e-28
Identities = 51/299 (17%), Positives = 90/299 (30%), Gaps = 52/299 (17%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPL 246
R P+ + + C G + WF +
Sbjct: 1 RVLQVDIVPSQGEISVGE-----SKFFLCQVAGDAKDKDISWFSPN--------GEKLSP 47
Query: 247 SDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 301
+ +R ++ L I + ++D G Y C + + G+ +V + +
Sbjct: 48 NQQRISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNV--------KIF 98
Query: 302 RAPEIGNQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 353
+ N G+ + CD + W +++D R V + L
Sbjct: 99 QKLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 354 YFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA 413
+++ D G Y C + + V Q + N T
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQ-VIVNVPPTVQARQSIVN--ATANL---- 210
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKMR--GPY 464
G V L C A G+P P+ +WT+ G P+ F + + LTI NV Y
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY 269
Score = 112 bits (282), Expect = 1e-27
Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 39/233 (16%)
Query: 588 MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD----GALYFSALEQIDAGNYSCNV 643
C + + W +R+ V ++ L DAG Y C V
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 644 Q----SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLEC 694
++ T +K+F F AP G+ + C
Sbjct: 82 TAEDGTQSEATVN------VKIFQ-------------KLMFKNAPTPQEFKEGEDAVIVC 122
Query: 695 VAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALE 751
P+ W +G + + N L I +K D+G Y C
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI 182
Query: 752 SS--VTISIQAEPNFTIP--LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ + + + P + + + +T C+A G P+ T SW ++GE
Sbjct: 183 NFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGE 235
Score = 107 bits (269), Expect = 7e-26
Identities = 50/282 (17%), Positives = 84/282 (29%), Gaps = 67/282 (23%)
Query: 413 AGDKVRLECVAFGYP-VPSYNWTRR-GSPLPRN------AYFENFNRILTIPNVKM--RG 462
G+ C G +W G L N + ++ + LTI N + G
Sbjct: 16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75
Query: 463 PY-------------------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP 497
Y F PT F + D + C P
Sbjct: 76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE-----DAVIVCDVVSSLPP 130
Query: 498 SYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
+ W + + D RF LS L I + D G+Y C+
Sbjct: 131 TIIWKHKG--------RDVILKKDVRFIVLSNNYLQIRGI-KKTDEGTYRCEGRILARGE 181
Query: 557 ISE-SVQLAFGFIGEFNLKRAPEIGNQNWGKAMF--CD-----PPTNYPGVNYYWARDYF 608
I+ +Q+ +++ N G+++ CD PT W +D
Sbjct: 182 INFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTM------SWTKDGE 235
Query: 609 P---NFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
P +++K +F L +++ D Y C ++K
Sbjct: 236 PIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKA 277
Score = 106 bits (267), Expect = 1e-25
Identities = 50/296 (16%), Positives = 82/296 (27%), Gaps = 78/296 (26%)
Query: 315 MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD----GALYFSALEQIDAGNYSCNV 370
C + + W +R+ V ++ L DAG Y C V
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 371 Q----SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLEC 421
++ T +K+F F AP G+ + C
Sbjct: 82 TAEDGTQSEATVN------VKIFQ-------------KLMFKNAPTPQEFKEGEDAVIVC 122
Query: 422 VAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKM--RGPY------------ 464
P+ W +G + + N L I +K G Y
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEI 182
Query: 465 ----------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQ 508
+ + +L + +TL C A G+P P+ W K+
Sbjct: 183 NFKDIQVIVNVPPTVQARQSIVNATANLGQ-----SVTLVCDADGFPEPTMSWTKDG--- 234
Query: 509 DRLVANLIDPLSDKRF-TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ + + +K + L I + D Y C A NK G S+ L
Sbjct: 235 EPIENE--EEDDEKHIFSDDSSELTIRNV-DKNDEAEYVCIAENKAGE-QDASIHL 286
Score = 91.9 bits (228), Expect = 1e-20
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 9/124 (7%)
Query: 686 AGDKVRLECVAFGYP-VPSYNWTRR-GSPLPRN------AYFENFNRILTIPNVKVEDQG 737
G+ C G +W G L N + ++ + LTI N ++D G
Sbjct: 16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75
Query: 738 EYICRASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
Y C + + + E++V + I + F T + D C+ T W
Sbjct: 76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135
Query: 797 RNGE 800
G
Sbjct: 136 HKGR 139
Score = 91.5 bits (227), Expect = 2e-20
Identities = 39/202 (19%), Positives = 67/202 (33%), Gaps = 32/202 (15%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
KI + F PT F + D + C P+ W + +
Sbjct: 96 KIFQKLMFKNAPTPQEFKEGE-----DAVIVCDVVSSLPPTIIWKHKG--------RDVI 142
Query: 245 PLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLAFGFIGEFNLKR 302
D RF LS L I + D G+Y C+ I+ +Q+ ++
Sbjct: 143 LKKDVRFIVLSNNYLQIRGI-KKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQ 201
Query: 303 APEIGNQNWGKAMF--CD-----PPTNYPGVNYYWARDYFP---NFVEEDKRVFVSYDGA 352
+ N G+++ CD PT W +D P +++K +F
Sbjct: 202 SIVNATANLGQSVTLVCDADGFPEPTM------SWTKDGEPIENEEEDDEKHIFSDDSSE 255
Query: 353 LYFSALEQIDAGNYSCNVQSKV 374
L +++ D Y C ++K
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKA 277
Score = 62.2 bits (151), Expect = 2e-10
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF-TLSGGNLIINDPRQVEDR 269
+TL C A G+P P+ W K+ + + + +K + L I + D
Sbjct: 213 SVTLVCDADGFPEPTMSWTKDG---EPIENE--EEDDEKHIFSDDSSELTIRNV-DKNDE 266
Query: 270 GSYHCKASNKFGSIISESVQL 290
Y C A NK G S+ L
Sbjct: 267 AEYVCIAENKAGE-QDASIHL 286
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 139 bits (351), Expect = 9e-37
Identities = 72/309 (23%), Positives = 104/309 (33%), Gaps = 41/309 (13%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P+F +P V L + T C+ G W K++ I P +
Sbjct: 6 PFFDLKPVSVDLALGE-----SGTFKCHVTGTAPIKITWAKDN--------REIRPGGNY 52
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAP 577
+ TL L + + D G Y C ASN G VQ FI + R
Sbjct: 53 KMTLVENTATLTVLKVTK-GDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIV 111
Query: 578 EIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQID 635
+ + C P + W +D R+ L L D
Sbjct: 112 KQDEH----TRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166
Query: 636 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV 695
+G+Y+C + G LKV F K P+ + G V LEC
Sbjct: 167 SGDYTCEAHNAA---GSASSSTSLKVKEPPVF--RKKPHP--VETLK----GADVHLECE 215
Query: 696 AFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALE 751
G P +W + L + ENF + I NV D GEY C+ASND +
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYT 275
Query: 752 SSVTISIQA 760
+I+++A
Sbjct: 276 CVGSITLKA 284
Score = 122 bits (308), Expect = 4e-31
Identities = 48/209 (22%), Positives = 74/209 (35%), Gaps = 25/209 (11%)
Query: 602 YWARDYFPNFVEEDKRV---FVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGP 655
WA+D + V L + + DAG Y+C NV K S + +
Sbjct: 38 TWAKDNRE--IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ--- 92
Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 715
L V F +K K + R EC G P W + + +
Sbjct: 93 ---LGVQEPPRF--IKKLEP-----SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142
Query: 716 NAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDK 771
++ F +L + N+ VED G+Y C A N + SS ++ ++ P F
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 202
Query: 772 HMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
AD+ CE G P SW ++
Sbjct: 203 ETLKGADVHLECELQGTPPFQVSWHKDKR 231
Score = 110 bits (276), Expect = 6e-27
Identities = 63/288 (21%), Positives = 89/288 (30%), Gaps = 43/288 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F +P V L + T C+ G W K++ I P +
Sbjct: 6 PFFDLKPVSVDLALGE-----SGTFKCHVTGTAPIKITWAKDN--------REIRPGGNY 52
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAP 304
+ TL L + + D G Y C ASN G VQ FI + R
Sbjct: 53 KMTLVENTATLTVLKVTK-GDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIV 111
Query: 305 EIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD-GALYFSALEQID 362
+ + C P + W +D R+ L L D
Sbjct: 112 KQDEH----TRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166
Query: 363 AGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV 422
+G+Y+C + G LKV F K P+ + G V LEC
Sbjct: 167 SGDYTCEAHNAA---GSASSSTSLKVKEPPVF--RKKPHP--VETLK----GADVHLECE 215
Query: 423 AFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKMR--GPY 464
G P +W + L + ENF + I NV G Y
Sbjct: 216 LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 263
Score = 107 bits (269), Expect = 5e-26
Identities = 51/292 (17%), Positives = 80/292 (27%), Gaps = 73/292 (25%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILT 454
P F P G+ +C G W + + LT
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64
Query: 455 IPNVK-------------MRG-------------PYFIKQPTDVVFDLSKRSILNDITLS 488
+ V + G P FIK+
Sbjct: 65 VLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEH----TRYE 120
Query: 489 CYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVEDRGSYH 546
C GG P W+K++ I S R + L + + VED G Y
Sbjct: 121 CKIGGSPEIKVLWYKDE--------TEIQESSKFRMSFVESVAVLEMYNL-SVEDSGDYT 171
Query: 547 CKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-C----DPPTNYPG 598
C+A N GS S V+ F + + + G C PP
Sbjct: 172 CEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLK-G----ADVHLECELQGTPP---FQ 223
Query: 599 VNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKV 647
V+ W +D + K+ + + ++ ++ D G Y C + V
Sbjct: 224 VS--WHKDKRE--LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Score = 105 bits (264), Expect = 3e-25
Identities = 56/276 (20%), Positives = 84/276 (30%), Gaps = 74/276 (26%)
Query: 329 YWARDYFPNFVEEDKRV---FVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGP 382
WA+D + V L + + DAG Y+C NV K S + +
Sbjct: 38 TWAKDNRE--IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQ--- 92
Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 442
L V F +K K + R EC G P W + + +
Sbjct: 93 ---LGVQEPPRF--IKKLEP-----SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE 142
Query: 443 NAYF----ENFNRILTIPNVKMR--G------------------------PYFIKQPTDV 472
++ F +L + N+ + G P F K+P V
Sbjct: 143 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 202
Query: 473 VFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SDKRFTLSGGN- 530
D+ L C G P W K+ L S K++ + N
Sbjct: 203 ETLKGA-----DVHLECELQGTPPFQVSWHKDK-----------RELRSGKKYKIMSENF 246
Query: 531 ---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ I + D G Y CKASN GS + +
Sbjct: 247 LTSIHILNV-DSADIGEYQCKASNDVGS-YTCVGSI 280
Score = 79.8 bits (197), Expect = 2e-16
Identities = 40/198 (20%), Positives = 63/198 (31%), Gaps = 38/198 (19%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P FIK+ C GG P W+K++ I S
Sbjct: 99 PRFIKKLEPSRIVKQDEHT----RYECKIGGSPEIKVLWYKDE--------TEIQESSKF 146
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAP 304
R + L + + VED G Y C+A N GS S V+ F + +
Sbjct: 147 RMSFVESVAVLEMYNL-SVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL 205
Query: 305 EIGNQNWGKAMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFS 356
+ G C PP V+ W +D + K+ + + ++
Sbjct: 206 K-G----ADVHLECELQGTPP---FQVS--WHKDKRE--LRSGKKYKIMSENFLTSIHIL 253
Query: 357 ALEQIDAGNYSCNVQSKV 374
++ D G Y C + V
Sbjct: 254 NVDSADIGEYQCKASNDV 271
Score = 62.4 bits (152), Expect = 1e-10
Identities = 27/106 (25%), Positives = 37/106 (34%), Gaps = 23/106 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 248
P F K+P V D+ L C G P W K+ L S
Sbjct: 193 PVFRKKPHPVETLKGA-----DVHLECELQGTPPFQVSWHKDK-----------RELRSG 236
Query: 249 KRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
K++ + N + I + D G Y CKASN GS + +
Sbjct: 237 KKYKIMSENFLTSIHILNV-DSADIGEYQCKASNDVGS-YTCVGSI 280
Score = 33.9 bits (78), Expect = 0.16
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P F + + T+ C G + +W ++
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR 44
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 127 bits (321), Expect = 1e-32
Identities = 42/326 (12%), Positives = 88/326 (26%), Gaps = 45/326 (13%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P+ + +V D + C P + W K+ +
Sbjct: 4 PFTKEVVVNVDDDGVIS-----LNFECDKMT-PKSEFSWSKDY--------VSTEDSPRL 49
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESV---QLAFGFIGEFNLKRAP 577
G + D ++D G Y C ++ G S + +L K
Sbjct: 50 EVESKGNKTKMTFKDL-GMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPT 108
Query: 578 EIGNQNWGK--------AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---- 625
+ + + + E + + D
Sbjct: 109 VPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMHIDRNTGII 166
Query: 626 -LYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP 681
++ L+ D G Y+ + ++ T K+ + FQ+ ++ F
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 226
Query: 682 EAPK----AGDKVRLECVAFGYPVPSY-NWTRRGSPLPRNAYF--ENFNRILTIPNVKVE 734
E V L+C ++ W + + + ++ L I +
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 286
Query: 735 DQGEYICRASNDRSALESSVTISIQA 760
D G Y +DR +S + + +A
Sbjct: 287 DAGIYEVILKDDRGKDKSRLKLVDEA 312
Score = 100 bits (250), Expect = 2e-23
Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 42/239 (17%)
Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVSDTGRN 653
P + W++DY E+ R+ V G + F L D G YSC V+DT
Sbjct: 30 PKSEFSWSKDYVS--TEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSC----DVTDTDGI 83
Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA------GDKVRLECVAFGYPVPSYNWT 707
+ + L + FP ++ A G N+
Sbjct: 84 ASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYI 143
Query: 708 RRGSPLPRNAYF------ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA- 760
+ + + + ++ ED+G Y + + ++ S+V +
Sbjct: 144 FNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVF 203
Query: 761 ------------------EPNFTIPLTDKHMDNQADLTWTCEAFGV-PDVTYSWFRNGE 800
P+F L+ + ++ C+ + + W+++
Sbjct: 204 KKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC-NVLLKCKVANIKKETHIVWYKDER 261
Score = 96.6 bits (240), Expect = 6e-22
Identities = 35/298 (11%), Positives = 75/298 (25%), Gaps = 45/298 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+ + +V D + C P + W K+ +
Sbjct: 4 PFTKEVVVNVDDDGVIS-----LNFECDKMT-PKSEFSWSKDY--------VSTEDSPRL 49
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESV---QLAFGFIGEFNLKRAP 304
G + D ++D G Y C ++ G S + +L K
Sbjct: 50 EVESKGNKTKMTFKDL-GMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPT 108
Query: 305 EIGNQNWGK--------AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---- 352
+ + + + E + + D
Sbjct: 109 VPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMHIDRNTGII 166
Query: 353 -LYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFP 408
++ L+ D G Y+ + ++ T K+ + FQ+ ++ F
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 226
Query: 409 EAPK----AGDKVRLECVAFGYPVPSY-NWTRRGSPLPRNAYF--ENFNRILTIPNVK 459
E V L+C ++ W + + + ++ L I
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 284
Score = 57.7 bits (139), Expect = 5e-09
Identities = 23/220 (10%), Positives = 53/220 (24%), Gaps = 41/220 (18%)
Query: 178 MDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDR 237
+ + + K P +K V + N + +
Sbjct: 98 LALSHEHKFP--TVPVKSELAVEILEKGQVRF----WMQAEKLSGNAKVNYIFNE----- 146
Query: 238 LVANLIDPLSDKRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 293
I + + + + Q ED G+Y + + + S +V L
Sbjct: 147 ---KEIFEGPKYKMHIDRNTGIIEMFMEKL-QDEDEGTYTFQLQDGKATNHS-TVVLVGD 201
Query: 294 FIGEFNLKRAPEIGNQNWGKA------------------MFCDPPTNYPGVNYYWARDYF 335
+ + + + + C + W +D
Sbjct: 202 VFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDER 261
Query: 336 PNFVEEDKRVFVSYDGA-LYFSALEQIDAGNYSCNVQSKV 374
+ D++ L + + DAG Y ++
Sbjct: 262 E--ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 299
Score = 53.5 bits (128), Expect = 1e-07
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 21/113 (18%)
Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-EWFKEDYVQDRLV 239
+GP+F++ + V ++ L C ++ W+K++
Sbjct: 214 RQEWIRKQGPHFVEYLSWEVTGEC------NVLLKCKVANIKKETHIVWYKDE------- 260
Query: 240 ANLIDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
I D++ G L+I + +D G Y + G S ++L
Sbjct: 261 -REISV--DEKHDFKDGICTLLITEF-SKKDAGIYEVILKDDRGKDKS-RLKL 308
Score = 34.6 bits (79), Expect = 0.10
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P + + D L + C+ P +SW ++
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYV 41
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 125 bits (316), Expect = 9e-32
Identities = 61/351 (17%), Positives = 98/351 (27%), Gaps = 73/351 (20%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPL-S 520
Q +VF + + LSC GG P W K+ L
Sbjct: 9 GPEPGQQEQLVFGSG-----DAVELSCPPPGGGPMGPTVWVKDG-----------TGLVP 52
Query: 521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL--KRAPE 578
+R + L + + ED G+Y C+ + SV++ + + E
Sbjct: 53 SERVLVGPQRLQVLNASH-EDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAE 111
Query: 579 IGNQNWGKAMFCDPPTN---------------------YPGVNYYWARD--YFPNFVEED 615
+ G + P P + W ++ F
Sbjct: 112 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG 171
Query: 616 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF---PHSNFQQLKF 672
+L ++ D GNY+C V++K G + L V PH Q
Sbjct: 172 GIKLRHQQWSLVMESVVPSDRGNYTCVVENKF---GSIRQTYTLDVLERSPHRPILQAGL 228
Query: 673 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR----------------- 715
P N +T G V C + P W +
Sbjct: 229 PAN--QTAVL----GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282
Query: 716 NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI 766
+ +L++ NV ED GEY C A N S + + +
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELV 333
Score = 119 bits (300), Expect = 1e-29
Identities = 43/237 (18%), Positives = 72/237 (30%), Gaps = 29/237 (12%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
C PP P W +D + +RV V L D+G YSC +
Sbjct: 30 CPPPGGGPMGPTVWVKDGTG--LVPSERVLVG-PQRLQVLNASHEDSGAYSCRQRLTQRV 86
Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK---------------AGDKVRLEC 694
+ + + + AP A + VR C
Sbjct: 87 L-CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRC 145
Query: 695 VAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
A G P PS +W + G + L + +V D+G Y C N +
Sbjct: 146 PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 205
Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTYSWFRNGEL 801
+ + T+ + L NQ +D+ + C+ + W ++ E+
Sbjct: 206 IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEV 262
Score = 105 bits (264), Expect = 7e-25
Identities = 52/305 (17%), Positives = 75/305 (24%), Gaps = 69/305 (22%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C PP P W +D + +RV V L D+G YSC +
Sbjct: 30 CPPPGGGPMGPTVWVKDGTG--LVPSERVLVG-PQRLQVLNASHEDSGAYSCRQRLTQRV 86
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK---------------AGDKVRLEC 421
+ + + + AP A + VR C
Sbjct: 87 L-CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRC 145
Query: 422 VAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKM--RGPY---------- 464
A G P PS +W + G + L + +V RG Y
Sbjct: 146 PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 205
Query: 465 -------------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED 505
P + L D+ C P +W K
Sbjct: 206 IRQTYTLDVLERSPHRPILQAGLPANQTAVLGS-----DVEFHCKVYSDAQPHIQWLKHV 260
Query: 506 YV-------QDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 558
V ++ L +++ ED G Y C A N G
Sbjct: 261 EVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV-TFEDAGEYTCLAGNSIGF-SH 318
Query: 559 ESVQL 563
S L
Sbjct: 319 HSAWL 323
Score = 102 bits (254), Expect = 1e-23
Identities = 33/156 (21%), Positives = 48/156 (30%), Gaps = 31/156 (19%)
Query: 676 FPKTFPEAPK-----AGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIP 729
P P + +GD V L C G P+ W + G+ L + + L +
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVL 66
Query: 730 NVKVEDQGEYICRASN---------------------DRSALESSVTISIQAEPNFTIPL 768
N ED G Y CR + E+ T P +T P
Sbjct: 67 NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPE 126
Query: 769 TDKHMDNQA----DLTWTCEAFGVPDVTYSWFRNGE 800
+ + C A G P + SW +NG
Sbjct: 127 RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGR 162
Score = 97.4 bits (242), Expect = 4e-22
Identities = 53/324 (16%), Positives = 80/324 (24%), Gaps = 95/324 (29%)
Query: 403 FPKTFPEAPK-----AGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAYFENFNRILTIP 456
P P + +GD V L C G P+ W + G+ L + + L +
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVL 66
Query: 457 NVKM-----------------------------------------------RGPYFIKQP 469
N PY+ +
Sbjct: 67 NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPE 126
Query: 470 TDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG 529
L+ N + C A G P PS W K + +
Sbjct: 127 RMDKKLLA-VPAANTVRFRCPAAGNPTPSISWLKNG---REFRGE--HRIGGIKLRHQQW 180
Query: 530 NLIINDPRQVEDRGSYHCKASNKFGSIISESVQL---------AFGFIGEFNLKRA---- 576
+L++ DRG+Y C NKFGS I ++ L G + A
Sbjct: 181 SLVMESV-VPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 238
Query: 577 -------------PEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYD 623
P I W K + + P Y
Sbjct: 239 DVEFHCKVYSDAQPHI---QWLKHVEVNGSKVGPD-----GTPYVTVLKTAGANTTDKEL 290
Query: 624 GALYFSALEQIDAGNYSCNVQSKV 647
L + DAG Y+C + +
Sbjct: 291 EVLSLHNVTFEDAGEYTCLAGNSI 314
Score = 95.5 bits (237), Expect = 2e-21
Identities = 49/302 (16%), Positives = 82/302 (27%), Gaps = 56/302 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPL-S 247
Q +VF + + LSC GG P W K+ L
Sbjct: 9 GPEPGQQEQLVFGSG-----DAVELSCPPPGGGPMGPTVWVKDG-----------TGLVP 52
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL--KRAPE 305
+R + L + + ED G+Y C+ + SV++ + + E
Sbjct: 53 SERVLVGPQRLQVLNASH-EDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAE 111
Query: 306 IGNQNWGKAMFCDPPTN---------------------YPGVNYYWARD--YFPNFVEED 342
+ G + P P + W ++ F
Sbjct: 112 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG 171
Query: 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF---PHSNFQQLKF 399
+L ++ D GNY+C V++K G + L V PH Q
Sbjct: 172 GIKLRHQQWSLVMESVVPSDRGNYTCVVENKF---GSIRQTYTLDVLERSPHRPILQAGL 228
Query: 400 PNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK 459
P N +T G V C + P W + + + +
Sbjct: 229 PAN--QTAVL----GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282
Query: 460 MR 461
Sbjct: 283 AN 284
Score = 69.6 bits (170), Expect = 7e-13
Identities = 40/220 (18%), Positives = 60/220 (27%), Gaps = 42/220 (19%)
Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 240
E+ PY+ + L+ N + C A G P PS W K
Sbjct: 111 EDTGVDTGAPYWTRPERMDKKLLA-VPAANTVRFRCPAAGNPTPSISWLKNG---REFRG 166
Query: 241 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL---------A 291
+ + +L++ DRG+Y C NKFGS I ++ L
Sbjct: 167 E--HRIGGIKLRHQQWSLVMESV-VPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRP 222
Query: 292 FGFIGEFNLKRA-----------------PEIGNQNWGKAMFCDPPTNYPGVNYYWARDY 334
G + A P I W K + + P Y
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI---QWLKHVEVNGSKVGPD-----GTPY 274
Query: 335 FPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
L + DAG Y+C + +
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSI 314
Score = 55.8 bits (134), Expect = 2e-08
Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 14/111 (12%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYV-------QDRLV 239
R P + L D+ C P +W K V
Sbjct: 220 HRPILQAGLPANQTAVLGS-----DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 274
Query: 240 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
++ L +++ ED G Y C A N G S L
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNV-TFEDAGEYTCLAGNSIGF-SHHSAWL 323
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 119 bits (300), Expect = 4e-30
Identities = 48/311 (15%), Positives = 86/311 (27%), Gaps = 43/311 (13%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P ++V + + +TL C + G S EW I P
Sbjct: 5 PVIEPSGPELVVEPGE-----TVTLRCVSNG----SVEWDGP-----------ISPYWTL 44
Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ 582
G L + ++ G+Y C + + ++ L ++ +
Sbjct: 45 DPESPGSTLTTRNA-TFKNTGTYRCTELEDPMAGST-TIHL---YVKDPAHSWNLLAQEV 99
Query: 583 --NWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 638
G+ C + R+ V F S + +D+
Sbjct: 100 TVVEGQEAVLPCLITDPALKDSVSLMREGGR-QVLRKTVYFFSPWRGFIIRKAKVLDSNT 158
Query: 639 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 698
Y C V+ LKV + P + G+ ++ C A
Sbjct: 159 YVCKTM--VNGRESTSTGIWLKVNR----VHPEPPQIKLEPSKLVRIRGEAAQIVCSATN 212
Query: 699 YPVPSYNWTRRGSPLPR-------NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALE 751
V +RG + R L++ V +D G Y C ASND
Sbjct: 213 AEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRT 272
Query: 752 SSVTISIQAEP 762
+++ +
Sbjct: 273 ATMNFQVVESH 283
Score = 90.0 bits (223), Expect = 6e-20
Identities = 30/217 (13%), Positives = 53/217 (24%), Gaps = 32/217 (14%)
Query: 603 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 662
W P + + + S L + G Y C L V
Sbjct: 34 WDGPISPYWTLDPE----SPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT---IHLYV- 85
Query: 663 PHSNFQQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPV-PSYNWTRRGSPLP-- 714
+ ++ G + L C+ + S + R G
Sbjct: 86 -----------KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR 134
Query: 715 RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS-----VTISIQAEPNFTIPLT 769
+ YF + R I KV D Y+C+ + S+ V P + +
Sbjct: 135 KTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPS 194
Query: 770 DKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMT 806
C A + G+ ++
Sbjct: 195 KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP 231
Score = 87.7 bits (217), Expect = 4e-19
Identities = 42/288 (14%), Positives = 76/288 (26%), Gaps = 45/288 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++V + + +TL C + G S EW I P
Sbjct: 5 PVIEPSGPELVVEPGE-----TVTLRCVSNG----SVEWDGP-----------ISPYWTL 44
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ 309
G L + ++ G+Y C + + ++ L ++ +
Sbjct: 45 DPESPGSTLTTRNA-TFKNTGTYRCTELEDPMAGST-TIHL---YVKDPAHSWNLLAQEV 99
Query: 310 --NWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 365
G+ C + R+ V F S + +D+
Sbjct: 100 TVVEGQEAVLPCLITDPALKDSVSLMREGGR-QVLRKTVYFFSPWRGFIIRKAKVLDSNT 158
Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 425
Y C V+ LKV + P + G+ ++ C A
Sbjct: 159 YVCKTM--VNGRESTSTGIWLKVNR----VHPEPPQIKLEPSKLVRIRGEAAQIVCSATN 212
Query: 426 YPVPSYNWTRRGSPLPR-------NAYFENFNRILTIPNVKMR--GPY 464
V +RG + R L++ V + G Y
Sbjct: 213 AEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY 260
Score = 83.5 bits (206), Expect = 1e-17
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 7/118 (5%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
+ G+ V L CV+ G S W SP E+ LT N ++ G Y C
Sbjct: 17 EPGETVTLRCVSNG----SVEWDGPISPYWT-LDPESPGSTLTTRNATFKNTGTYRCTEL 71
Query: 745 NDRSALESSVTISIQAEPN-FTIPLTDKHMDNQADLTWTCEA-FGVPDVTYSWFRNGE 800
D A +++ + ++ + + + + + + C + S R G
Sbjct: 72 EDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGG 129
Score = 62.3 bits (151), Expect = 1e-10
Identities = 32/192 (16%), Positives = 51/192 (26%), Gaps = 24/192 (12%)
Query: 192 FIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 250
+ +V + + L C S +E
Sbjct: 92 WNLLAQEVTVVEGQ-----EAVLPCLITDPALKDSVSLMREG--------GRQVLRKTVY 138
Query: 251 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF--NLKRAPEIGN 308
F II +V D +Y CK S + L + +K P
Sbjct: 139 FFSPWRGFIIRKA-KVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLV 197
Query: 309 QNWG-KAMF-CDPPTNYPGVNYYWARD----YFPNFVEEDKRVFVSYDGALYFSALEQID 362
+ G A C TN + + + + AL +A++ D
Sbjct: 198 RIRGEAAQIVCSA-TNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQD 256
Query: 363 AGNYSCNVQSKV 374
AG YSC + V
Sbjct: 257 AGIYSCVASNDV 268
Score = 55.3 bits (133), Expect = 2e-08
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 17/136 (12%)
Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
++C+ + N + G+ ++ P P +P+ +V + +
Sbjct: 159 YVCKTMV-------NGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEA-----AQI 206
Query: 215 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 274
C A K D + ++ + L +N +D G Y C
Sbjct: 207 VCSATNAEVGFNVILKRG---DTKLEIPLNSDFQDNYYKKVRALSLNAV-DFQDAGIYSC 262
Query: 275 KASNKFGSIISESVQL 290
ASN G+ + ++
Sbjct: 263 VASNDVGT-RTATMNF 277
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 119 bits (299), Expect = 9e-30
Identities = 56/319 (17%), Positives = 88/319 (27%), Gaps = 44/319 (13%)
Query: 465 FIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSY-----EWFKEDYVQDRLVANLIDP 518
++ PT V L D +TL CY W + V +
Sbjct: 3 VVQAPTQV------PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQG 56
Query: 519 LS------------DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 566
S L +L + +VED G+Y C S + L
Sbjct: 57 PSYSESKRLEFVAARLGAELRNASLRMFG-LRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
Query: 567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF----VSY 622
+ + C P W D F V+
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
Q+D N +C V+ + + + L V +P + +
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTV-NLTV---------YYPPEVSISGYD 225
Query: 683 AP--KAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEY 739
++ L C A P P YNW+ PLP A + L I V
Sbjct: 226 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQG--AQLLIRPVDKPINTTL 283
Query: 740 ICRASNDRSALESSVTISI 758
IC +N A ++ +T+ +
Sbjct: 284 ICNVTNALGARQAELTVQV 302
Score = 92.5 bits (229), Expect = 1e-20
Identities = 35/220 (15%), Positives = 62/220 (28%), Gaps = 23/220 (10%)
Query: 593 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 652
+ ++ FV + + +L L D GNY+C + G
Sbjct: 49 AVFHQTQGPSYSESKRLEFVAARLGAELR-NASLRMFGLRVEDEGNYTCLFVTFPQ--GS 105
Query: 653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRRGS 711
L+V L P N + CV+ G P W
Sbjct: 106 RSVDIWLRV--------LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG 157
Query: 712 PLPRNAYFENFNR-------ILTIPNVKVEDQGEYICRASND--RSALESSVTISIQAEP 762
+P + F + + D C+ ++ +V +++ P
Sbjct: 158 GMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP 217
Query: 763 NFTI-PLTDKHMDNQADLTWTCEAFGVP-DVTYSWFRNGE 800
+I + Q + T TC+A P Y+W
Sbjct: 218 EVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMG 257
Score = 90.9 bits (225), Expect = 4e-20
Identities = 51/292 (17%), Positives = 77/292 (26%), Gaps = 44/292 (15%)
Query: 192 FIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSY-----EWFKEDYVQDRLVANLIDP 245
++ PT V L D +TL CY W + V +
Sbjct: 3 VVQAPTQV------PGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQG 56
Query: 246 LS------------DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 293
S L +L + +VED G+Y C S + L
Sbjct: 57 PSYSESKRLEFVAARLGAELRNASLRMFG-LRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
Query: 294 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF----VSY 349
+ + C P W D F V+
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175
Query: 350 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 409
Q+D N +C V+ + + + L V +P + +
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLT-VNLTV---------YYPPEVSISGYD 225
Query: 410 AP--KAGDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNV 458
++ L C A P P YNW+ PLP A + L I V
Sbjct: 226 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ--GAQLLIRPV 275
Score = 57.8 bits (139), Expect = 5e-09
Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 21/190 (11%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P + V C + GG P W + + N
Sbjct: 118 PQNTAEVQKVQLTGEPV-----PMARCVSTGGRPPAQITWHSDL----GGMPNTSQVPGF 168
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQLAFGFIGEFNLKRAPEIG 307
T++ +L I P D + CK ++ +V L + E ++
Sbjct: 169 LSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNW 228
Query: 308 NQNWGKAMF-CDPPTNYPGVNYYWARD--YFPNFVEEDKRVFVSYDGALYFSALEQIDAG 364
+A CD +N Y W+ P F V+ L +++
Sbjct: 229 YLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA-------VAQGAQLLIRPVDKPINT 281
Query: 365 NYSCNVQSKV 374
CNV + +
Sbjct: 282 TLICNVTNAL 291
Score = 52.0 bits (124), Expect = 3e-07
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 15/82 (18%)
Query: 210 NDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
N+ TL+C A P P Y W PL G L+I P
Sbjct: 233 NEATLTCDARSNPEPTGYNWSTTM-----------GPLPP-FAVAQGAQLLIR-PVDKPI 279
Query: 269 RGSYHCKASNKFGSIISESVQL 290
+ C +N G+ + +
Sbjct: 280 NTTLICNVTNALGA-RQAELTV 300
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 117 bits (295), Expect = 4e-29
Identities = 47/335 (14%), Positives = 87/335 (25%), Gaps = 46/335 (13%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSC-YAGGYPNPSY---EWFKEDYVQDRLVANL--- 515
++ + + D+ L C +A P+ W K + VA
Sbjct: 15 SQVVQVNDSMYGFIGT-----DVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69
Query: 516 ----IDPLSDKRFTLSG-----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL--- 563
+ +R G + ++ ++ED G Y C+ + + L
Sbjct: 70 MGVSVLAPYRERVEFLRPSFTDGTIRLSR-LELEDEGVYICEFATFPTGNRESQLNLTVM 128
Query: 564 --AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE---DKRV 618
+I + G + C P W + +
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188
Query: 619 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF--PHSNFQQLKFPNNF 676
V+ + + +C V + + L V P +
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRFKES---LTLNVQYEPEVTIEGFD----- 240
Query: 677 PKTFPEAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNAYFENFNRILTIPNVKVED 735
V+L C A P + Y+WT LP+ +N + +
Sbjct: 241 ----GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQN-RTLFFKGPINYSL 295
Query: 736 QGEYICRASNDRSALESSVTISIQAEPNFTIPLTD 770
G YIC A+N V ++I
Sbjct: 296 AGTYICEATNPIGTRSGQVEVNITEAAALEHHHHH 330
Score = 92.1 bits (228), Expect = 2e-20
Identities = 38/187 (20%), Positives = 55/187 (29%), Gaps = 14/187 (7%)
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
DG + S LE D G Y C + TG L V +
Sbjct: 91 DGTIRLSRLELEDEGVYICEFAT--FPTGNRESQLNLTVMAKPTNWIEGTQ---AVLRAK 145
Query: 683 APKAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYFENFNR------ILTIPNVKVED 735
+ + C A G P +W R N N + +
Sbjct: 146 KGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAH 205
Query: 736 QGEYICRASNDRSALESSVTISIQAEPNFTI-PLTDKHMDNQADLTWTCEAFGVPDVT-Y 793
Q C + + S+T+++Q EP TI + D+ TC+A P T Y
Sbjct: 206 QQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEY 265
Query: 794 SWFRNGE 800
W
Sbjct: 266 HWTTLNG 272
Score = 86.0 bits (212), Expect = 2e-18
Identities = 39/297 (13%), Positives = 76/297 (25%), Gaps = 46/297 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSC-YAGGYPNPSY---EWFKEDYVQDRLVANL--- 242
++ + + D+ L C +A P+ W K + VA
Sbjct: 15 SQVVQVNDSMYGFIGT-----DVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPS 69
Query: 243 ----IDPLSDKRFTLSG-----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL--- 290
+ +R G + ++ ++ED G Y C+ + + L
Sbjct: 70 MGVSVLAPYRERVEFLRPSFTDGTIRLSR-LELEDEGVYICEFATFPTGNRESQLNLTVM 128
Query: 291 --AFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEE---DKRV 345
+I + G + C P W + +
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188
Query: 346 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF--PHSNFQQLKFPNNF 403
V+ + + +C V + + L V P +
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRFKES---LTLNVQYEPEVTIEGFD----- 240
Query: 404 PKTFPEAPKAGDKVRLECVAFGYPVPS-YNWTRRGSPLPRNAYFENFNRILTIPNVK 459
V+L C A P + Y+WT LP+ +N + +
Sbjct: 241 ----GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQN-RTLFFKGPIN 292
Score = 59.4 bits (143), Expect = 1e-09
Identities = 32/195 (16%), Positives = 53/195 (27%), Gaps = 28/195 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P + T V K + +C A G P W + A + +
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRL----KGEAEYQEIRNP 186
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI-- 306
+ R+ + S C + ES+ L N++ PE+
Sbjct: 187 NGTVTVISRYRLVPSRE-AHQQSLACIVNYHMDRF-KESLTL--------NVQYEPEVTI 236
Query: 307 --GNQNWGKA-----MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE 359
+ NW + C N P Y+W K V + +
Sbjct: 237 EGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS----LPKGVEAQNRTLFFKGPIN 292
Query: 360 QIDAGNYSCNVQSKV 374
AG Y C + +
Sbjct: 293 YSLAGTYICEATNPI 307
Score = 54.8 bits (131), Expect = 5e-08
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 14/82 (17%)
Query: 210 NDITLSCYAGGYPNPS-YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
D+ L+C A P + Y W + L L P
Sbjct: 248 MDVKLTCKADANPPATEYHWTTLN-----------GSLPK-GVEAQNRTLFFKGPINYSL 295
Query: 269 RGSYHCKASNKFGSIISESVQL 290
G+Y C+A+N G+ S V++
Sbjct: 296 AGTYICEATNPIGT-RSGQVEV 316
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 116 bits (291), Expect = 1e-28
Identities = 45/297 (15%), Positives = 81/297 (27%), Gaps = 32/297 (10%)
Query: 483 NDITLSCYAGGYPNPSYEW-FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 541
+ C S+ + K++ V + PL + G+L I + +
Sbjct: 45 EPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPL---NRRVKNGDLWIANYTSNDS 101
Query: 542 RGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNY 601
Y C + K G + V+ + + +G ++C N
Sbjct: 102 HRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNI 161
Query: 602 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFP 658
W ++ + D + L E D+G Y C ++ +
Sbjct: 162 TWYKNNQE--LIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKI 219
Query: 659 LKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVAFGYPVP----SYNWTRRG-- 710
L V P + F G+ + C A + +W
Sbjct: 220 LTVIPSQ-------DHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGW 272
Query: 711 -SPLPRNAYFENFNR------ILTIPNVKVEDQGE-YICRASNDRSALESSVTISIQ 759
L Y + L NV E G Y CR N + T+ ++
Sbjct: 273 IIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 99.1 bits (246), Expect = 1e-22
Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 33/231 (14%)
Query: 592 PPTNYPGVNYYWARD------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGN-YSCNVQ 644
PP +++ + V +G L+ + D+ Y C V
Sbjct: 52 PPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK-NGDLWIANYTSNDSHRRYLCTVT 110
Query: 645 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC-VAFGYPVPS 703
+K D + + P+ P+T+ + L C + + +
Sbjct: 111 TKNGDCVQG--IVRSHIRKP--------PSCIPETYELGTHDKYGIDLYCGILYAKHYNN 160
Query: 704 YNWTRRGSPLP-RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
W + L + + L I N ++ED G Y C D +++ + +S
Sbjct: 161 ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL 220
Query: 763 NFTIPLTDKHMDNQA---------DLTWTCEAFGVP----DVTYSWFRNGE 800
+ TC A DV W
Sbjct: 221 TVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSG 271
Score = 92.2 bits (228), Expect = 2e-20
Identities = 38/271 (14%), Positives = 70/271 (25%), Gaps = 31/271 (11%)
Query: 210 NDITLSCYAGGYPNPSYEW-FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
+ C S+ + K++ V + PL + G+L I + +
Sbjct: 45 EPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPL---NRRVKNGDLWIANYTSNDS 101
Query: 269 RGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNY 328
Y C + K G + V+ + + +G ++C N
Sbjct: 102 HRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNI 161
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFP 385
W ++ + D + L E D+G Y C ++ +
Sbjct: 162 TWYKNNQE--LIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKI 219
Query: 386 LKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVAFGYPVP----SYNWTRRG-- 437
L V P + F G+ + C A + +W
Sbjct: 220 LTVIPSQ-------DHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGW 272
Query: 438 -SPLPRNAYFENFNR------ILTIPNVKMR 461
L Y + L NV
Sbjct: 273 IIGLDFGVYSILTSSGGITEATLYFENVTEE 303
Score = 74.9 bits (183), Expect = 1e-14
Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 15/152 (9%)
Query: 663 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY---------NWTRRGSP- 712
P + + L F T + G+ +C + S+ NW + G
Sbjct: 20 PAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTR 79
Query: 713 LPRNAYFENFNRILTIPNVKVED-QGEYICRASNDR-SALESSVTISIQAEPNFTIPLTD 770
P N +N + L I N D Y+C + ++ V I+ P+ +
Sbjct: 80 RPLNRRVKNGD--LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYE 137
Query: 771 KHMDNQADLTWTCEAF-GVPDVTYSWFRNGEL 801
++ + C +W++N +
Sbjct: 138 LGTHDKYGIDLYCGILYAKHYNNITWYKNNQE 169
Score = 73.3 bits (179), Expect = 4e-14
Identities = 53/317 (16%), Positives = 89/317 (28%), Gaps = 78/317 (24%)
Query: 390 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY---------NWTRRGSP- 439
P + + L F T + G+ +C + S+ NW + G
Sbjct: 20 PAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTR 79
Query: 440 LPRNAYFENFNRILTIPNVK----------------------------MRGPYFIKQPTD 471
P N +N + L I N + P I + +
Sbjct: 80 RPLNRRVKNGD--LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYE 137
Query: 472 VVFDLSKRSILNDITLSC-YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN 530
+ I L C + W+K + + +++ SG N
Sbjct: 138 LGTHDKYG-----IDLYCGILYAKHYNNITWYKNN--------QELII-DGTKYSQSGQN 183
Query: 531 LIINDPRQVEDRGSYHCKASNKFGSI---ISESVQLAFGFIGEFNLKRAPEIGNQN---- 583
LII++P ++ED G Y C I I S + R I +
Sbjct: 184 LIIHNP-ELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL-TVIPSQDHRFKLILDPKINVT 241
Query: 584 WGKA--MFC---DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY-------DGALYFSAL 631
G+ + C V W + D V+ + LYF +
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGW-IIGLDFGVYSILTSSGGITEATLYFENV 300
Query: 632 EQIDAGN-YSCNVQSKV 647
+ GN Y+C +
Sbjct: 301 TEEYIGNTYTCRGHNYY 317
Score = 45.2 bits (106), Expect = 6e-05
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 13/111 (11%)
Query: 190 PYFIKQPTDVVFDLSKRSILN-----DITLSCYAGGYPNP----SYEWFKEDYVQDRLVA 240
+ D F L +N ++C A +W L
Sbjct: 219 ILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF 278
Query: 241 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGS-YHCKASNKFGSIISESVQL 290
+ L+ ++ L + + E G+ Y C+ N + + + +
Sbjct: 279 GVYSILTS-SGGITEATLYFENVTE-EYIGNTYTCRGHNYYFD-KTLTTTV 326
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 111 bits (279), Expect = 3e-28
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 8/131 (6%)
Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIP 729
+ P+ G+++ C A G P P+ +W R G + N + N LT+
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR 63
Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVP 789
N+ D G Y+CRA+N E + + +P+ + +N +T C+A G P
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENG-QVTLVCDAEGEP 122
Query: 790 DVTYSWFRNGE 800
+W R +
Sbjct: 123 IPEITWKRAVD 133
Score = 98.7 bits (246), Expect = 9e-24
Identities = 42/197 (21%), Positives = 70/197 (35%), Gaps = 48/197 (24%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIP 456
+ P+ G+++ C A G P P+ +W R G + N + N LT+
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR 63
Query: 457 NVKM--RG------------------------PYFIKQPTDVVFDLSKRSILNDITLSCY 490
N+ G P+ I+ + ++ +TL C
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENG------QVTLVCD 117
Query: 491 AGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG----GNLIINDPRQVEDRGSYH 546
A G P P W + D D D R + G +L I D ++ D G Y
Sbjct: 118 AEGEPIPEITWKRAV---DGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV-KLSDSGRYD 173
Query: 547 CKASNKFGSIISESVQL 563
C+A+++ G +S+ L
Sbjct: 174 CEAASRIGG-HQKSMYL 189
Score = 85.6 bits (212), Expect = 3e-19
Identities = 37/173 (21%), Positives = 59/173 (34%), Gaps = 28/173 (16%)
Query: 600 NYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL 659
W R+ E +K + + L + D G Y C +K G + L
Sbjct: 35 AISWFRNGKL-IEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKA---GEDEKQAFL 90
Query: 660 KVF--PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA 717
+VF PH + E +V L C A G P+P W R
Sbjct: 91 QVFVQPH-----------IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE 139
Query: 718 YF-----------ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
++ + L I +VK+ D G Y C A++ + S+ + I+
Sbjct: 140 GDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 74.5 bits (183), Expect = 2e-15
Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 39/201 (19%)
Query: 190 PYFI--KQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
P ++ + + + ++T SC A G P P+ WF+ LI+
Sbjct: 3 PAISMPQKSFNATAERGE-----EMTFSCRASGSPEPAISWFRNG--------KLIEENE 49
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAP 304
S L + + D G Y C+A+NK G + V + I N
Sbjct: 50 KYILKGSNTELTVRNIIN-SDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYE 108
Query: 305 EIGNQNWGKAMF-C----DPPTNYPGVNYYWARD---YFPNFVEEDKRVFVSYD---GAL 353
G+ C +P P + + A D + D R+ V +L
Sbjct: 109 N------GQVTLVCDAEGEPI---PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 159
Query: 354 YFSALEQIDAGNYSCNVQSKV 374
+ ++ D+G Y C S++
Sbjct: 160 HIKDVKLSDSGRYDCEAASRI 180
Score = 65.6 bits (160), Expect = 2e-12
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 15/105 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+ I+ + ++ +TL C A G P P W + D D D
Sbjct: 96 PHIIQLKNETTYENG------QVTLVCDAEGEPIPEITWKRAV---DGFTFTEGDKSLDG 146
Query: 250 RFTLSG----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
R + G +L I D ++ D G Y C+A+++ G +S+ L
Sbjct: 147 RIEVKGQHGSSSLHIKDV-KLSDSGRYDCEAASRIGG-HQKSMYL 189
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 115 bits (289), Expect = 4e-28
Identities = 54/402 (13%), Positives = 109/402 (27%), Gaps = 111/402 (27%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPL---------------------PRNAYFENFN 450
K GD V L C A ++W R + ++ N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 451 RILTIPNVKM--RGPYF------IKQPTDVVFDLSKRSILN-----DITLSCYAGGYPNP 497
L I N+K+ Y ++ +VF L+ S + +TL+ + +P
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 126
Query: 498 SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI- 556
S + + G L ++ +++D G++ C +
Sbjct: 127 SVQCRSP----------------RGKNIQGGKTLSVSQL-ELQDSGTWTCTVLQNQKKVE 169
Query: 557 ------------------ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG 598
E Q+ F F F +++ G W ++
Sbjct: 170 FKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQA---ERASSSKSW 226
Query: 599 VNYYWARDYFPNF-VEEDKRVFVSYDGALYFS----ALEQIDAGNYSCNVQSKVSDTGRN 653
+ + V +D ++ + L+ + + +GN + +++K G+
Sbjct: 227 ITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKT---GKL 283
Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPS--YNWTRRGS 711
L V + + L C +G P +
Sbjct: 284 HQEVNLVVMRAT---------------------QLQKNLTCEVWGPTSPKLMLSLKLENK 322
Query: 712 PLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
+ V + G + C S+ L S
Sbjct: 323 EAKVSKR-------EKAVWVLNPEAGMWQCLLSDSGQVLLES 357
Score = 97.2 bits (241), Expect = 8e-22
Identities = 52/364 (14%), Positives = 92/364 (25%), Gaps = 73/364 (20%)
Query: 484 DITLSCYAGGYPNPSYEWFKED---------YVQDRLVANLIDPLSDKRFTLSGGN--LI 532
+ L+C A + + W + + + L D +R GN LI
Sbjct: 11 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 70
Query: 533 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFC 590
I + ++ED +Y C+ ++ E VQL F L + + G++ +
Sbjct: 71 IKNL-KIEDSDTYICEVEDQ-----KEEVQL-----LVFGLTANSDT-HLLQGQSLTLTL 118
Query: 591 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 650
+ + N L S LE D+G ++C V
Sbjct: 119 ES-PPGSSPSVQCRSPRGKNIQG---------GKTLSVSQLELQDSGTWTCTVLQNQKKV 168
Query: 651 GRNGPFFPLKVFPHSNFQQLKFPN-------NFPKTFPEAPKAGDKVRLECVAFGYPVP- 702
+ V + + +FP F K L A
Sbjct: 169 EFK---IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVE-KLTGSGELWWQAERASSSK 224
Query: 703 ---SYNWTRRGSPLPRNAYFENFNR--------ILTIPNVKVEDQGEYICRASNDRSALE 751
+++ + + R L + G L
Sbjct: 225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH 284
Query: 752 SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFRNGELGHQMTDLL 809
V + + Q TCE +G P + S +
Sbjct: 285 QEVNLVVMRAT-------------QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK 331
Query: 810 LKAV 813
V
Sbjct: 332 AVWV 335
Score = 79.5 bits (195), Expect = 6e-16
Identities = 55/393 (13%), Positives = 108/393 (27%), Gaps = 82/393 (20%)
Query: 211 DITLSCYAGGYPNPSYEWFKED---------YVQDRLVANLIDPLSDKRFTLSGGN--LI 259
+ L+C A + + W + + + L D +R GN LI
Sbjct: 11 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 70
Query: 260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFC 317
I + ++ED +Y C+ ++ E VQL F L + + G++ +
Sbjct: 71 IKNL-KIEDSDTYICEVEDQ-----KEEVQL-----LVFGLTANSDT-HLLQGQSLTLTL 118
Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 377
+ + N L S LE D+G ++C V
Sbjct: 119 E-SPPGSSPSVQCRSPRGKNIQG---------GKTLSVSQLELQDSGTWTCTVLQNQKKV 168
Query: 378 GRNGPFFPLKVFPHSNFQQLKFPN-------NFPKTFPEAPKAGDKVRLECVAFGYPVP- 429
+ V + + +FP F K L A
Sbjct: 169 EFK---IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVE-KLTGSGELWWQAERASSSK 224
Query: 430 ---SYNWTRRGSPLPRNAYF------ENFNRILTIPNVKMR----GPY-----FIKQPTD 471
+++ + + R + LT+P + G
Sbjct: 225 SWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH 284
Query: 472 VVFDLSKRSIL-NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN 530
+L L+C G +P + L +K +S
Sbjct: 285 QEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLK--------------LENKEAKVSKRE 330
Query: 531 LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ + G + C S+ ++ ++++
Sbjct: 331 KAVW--VLNPEAGMWQCLLSDSGQVLLESNIKV 361
Score = 76.0 bits (186), Expect = 8e-15
Identities = 41/352 (11%), Positives = 87/352 (24%), Gaps = 92/352 (26%)
Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 398
+ + ++ + L L+ D+ Y C V+ + + F L ++ Q
Sbjct: 55 ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL--LVFGLTANSDTHLLQ-- 110
Query: 399 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 458
G + L + PS PR + + L++ +
Sbjct: 111 ---------------GQSLTLTLESPPGSSPSVQCRS-----PRGKNIQG-GKTLSVSQL 149
Query: 459 KM--RGPY---------------------FIKQPTDV------------VFDLSKRSILN 483
++ G + F K + V + +
Sbjct: 150 ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTG 209
Query: 484 DITLSCYAGGYPNP----SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 539
L A + +++ ++ R+ + + K L + Q
Sbjct: 210 SGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKK---LPLHLTLPQALPQY 266
Query: 540 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPP-TNYPG 598
G+ K G + E NL Q + C+ P
Sbjct: 267 AGSGNLTLALEAKTGKLHQ-----------EVNLVVMRATQLQK---NLTCEVWGPTSPK 312
Query: 599 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 650
+ + +K VS + +AG + C +
Sbjct: 313 LMLSLKLE--------NKEAKVSKR--EKAVWVLNPEAGMWQCLLSDSGQVL 354
Score = 32.5 bits (73), Expect = 0.54
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 16/81 (19%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
L+C G +P + L +K +S + +
Sbjct: 297 LQKNLTCEVWGPTSPKLMLSLK--------------LENKEAKVSKREKAVW--VLNPEA 340
Query: 270 GSYHCKASNKFGSIISESVQL 290
G + C S+ ++ ++++
Sbjct: 341 GMWQCLLSDSGQVLLESNIKV 361
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 111 bits (279), Expect = 5e-28
Identities = 50/196 (25%), Positives = 72/196 (36%), Gaps = 35/196 (17%)
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ----SKVSDTG 651
+P V Y W + +K + L F+A+ DAG Y C V + S
Sbjct: 45 HPFVQYQWFKM--------NKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS 96
Query: 652 RNGPFFPLKVF--PHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSY 704
+ L V P S + + + P G + L+CVA G P+P Y
Sbjct: 97 Q------LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHY 150
Query: 705 NWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF 764
W + PL ++ +P V +E QG Y C NDR + +S I E N
Sbjct: 151 QWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 205
Query: 765 TIPLTDKHMDNQADLT 780
H DN+ T
Sbjct: 206 L-----GHPDNKEQTT 216
Score = 104 bits (261), Expect = 1e-25
Identities = 32/147 (21%), Positives = 48/147 (32%), Gaps = 32/147 (21%)
Query: 681 PEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIP 729
P K AG V+L C A G+P Y W + +P L
Sbjct: 16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-----TSELIFN 70
Query: 730 NVKVEDQGEYICRASNDR-SALESSVTISIQA---------------EPNFTIPLTDKHM 773
V V+D G Y+CR +N+ + + + + T + +
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130
Query: 774 DNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ L C A G P Y WF+N
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNEL 157
Score = 89.2 bits (221), Expect = 3e-20
Identities = 37/206 (17%), Positives = 62/206 (30%), Gaps = 49/206 (23%)
Query: 186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 245
+PRG P + L C A G+P Y+WFK +
Sbjct: 15 VPRGSKITVNPESKAVLAG-----QFVKLCCRATGHPFVQYQWFKMN-----------KE 58
Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
+ + LI N V+D G Y C+ +N F S+ QL + +
Sbjct: 59 IPNGN----TSELIFNAV-HVKDAGFYVCRVNNNFTFEFSQWSQL---DVCDIPESFQRS 110
Query: 306 IGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRVFVS 348
+ + K C PT+ P +Y W ++ + +
Sbjct: 111 VDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKN--------ELPLTHE 162
Query: 349 YDGALYFSALEQIDAGNYSCNVQSKV 374
++ G Y C+V +
Sbjct: 163 TKKLYMVPYVDLEHQGTYWCHVYNDR 188
Score = 88.4 bits (219), Expect = 5e-20
Identities = 37/209 (17%), Positives = 57/209 (27%), Gaps = 79/209 (37%)
Query: 408 PEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIP 456
P K AG V+L C A G+P Y W + +P L
Sbjct: 16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-----TSELIFN 70
Query: 457 NVKM------------------------------------------RGPYFIKQPTDVVF 474
V + +PT
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130
Query: 475 DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIN 534
+ L C A G P P Y+WFK + PL+ + + ++
Sbjct: 131 MPGS-----TLVLQCVAVGSPIPHYQWFKNE-----------LPLTHE----TKKLYMVP 170
Query: 535 DPRQVEDRGSYHCKASNKFGSIISESVQL 563
+E +G+Y C N S S+ V++
Sbjct: 171 YV-DLEHQGTYWCHVYNDRDSQDSKKVEI 198
Score = 86.1 bits (213), Expect = 3e-19
Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 53/222 (23%)
Query: 443 NAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF 502
+++ + + +P RG P + L C A G+P Y+WF
Sbjct: 3 SSHHHHHHSSGLVP----RGSKITVNPESKAVLAG-----QFVKLCCRATGHPFVQYQWF 53
Query: 503 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQ 562
K + + + LI N V+D G Y C+ +N F S+ Q
Sbjct: 54 KMN-----------KEIPNGN----TSELIFNAV-HVKDAGFYVCRVNNNFTFEFSQWSQ 97
Query: 563 LAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWAR 605
L + + + + K C PT+ P +Y W +
Sbjct: 98 L---DVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK 154
Query: 606 DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
+ + + ++ G Y C+V +
Sbjct: 155 N--------ELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDR 188
Score = 77.6 bits (191), Expect = 3e-16
Identities = 36/155 (23%), Positives = 55/155 (35%), Gaps = 32/155 (20%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ----SKVSDTG 378
+P V Y W + +K + L F+A+ DAG Y C V + S
Sbjct: 45 HPFVQYQWFKM--------NKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS 96
Query: 379 RNGPFFPLKVF--PHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSY 431
+ L V P S + + + P G + L+CVA G P+P Y
Sbjct: 97 Q------LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHY 150
Query: 432 NWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY 464
W + PL ++ +P V + G Y
Sbjct: 151 QWFKNELPLTHET-----KKLYMVPYVDLEHQGTY 180
Score = 63.4 bits (154), Expect = 2e-11
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 21/101 (20%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+PT + L C A G P P Y+WFK + PL+ +
Sbjct: 119 LQICVEPTSQKLMPGS-----TLVLQCVAVGSPIPHYQWFKNE-----------LPLTHE 162
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ ++ +E +G+Y C N S S+ V++
Sbjct: 163 ----TKKLYMVPYV-DLEHQGTYWCHVYNDRDSQDSKKVEI 198
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 113 bits (283), Expect = 8e-28
Identities = 46/321 (14%), Positives = 87/321 (27%), Gaps = 44/321 (13%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P ++V +TL C G S EW L ++
Sbjct: 5 PVIEPSVPELVVKPGA-----TVTLRCVGNG----SVEWDGPPSPHWTLYSDG------- 48
Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE----FNLKRAPE 578
S L N+ ++ G+Y C + ++ L ++ + +N+
Sbjct: 49 ----SSSILSTNNA-TFQNTGTYRCTEPGDPLGGSA-AIHL---YVKDPARPWNVLAQEV 99
Query: 579 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 638
+ ++ + C R + S + I + +
Sbjct: 100 VVFEDQDALLPCLLTDPVLEAGVSLVRVR-GRPLMRHTNYSFSPWHGFTIHRAKFIQSQD 158
Query: 639 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 698
Y C+ LKV P G+ ++ C A
Sbjct: 159 YQCSALMGGRKVMSIS--IRLKVQKVIPG----PPALTLVPAELVRIRGEAAQIVCSASS 212
Query: 699 YPVPSYNWTRRGS---PLPRNAYFEN----FNRILTIPNVKVEDQGEYICRASNDRSALE 751
V + + + +P+ + F N L + V + G Y C ASN +
Sbjct: 213 VDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHS 272
Query: 752 SSVTISIQAEPNFTIPLTDKH 772
+S+ + E H
Sbjct: 273 TSMFFRVV-ESAGNSHHHHHH 292
Score = 89.3 bits (221), Expect = 1e-19
Identities = 29/202 (14%), Positives = 45/202 (22%), Gaps = 29/202 (14%)
Query: 613 EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKF 672
L + + G Y C L V
Sbjct: 40 PHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA---IHLYV----------- 85
Query: 673 PNNFPKTFPEAPK-----AGDKVRLECVAFGYPV-PSYNWTRR-GSPLPRNA-YFENFNR 724
+ + + + L C+ + + R G PL R+ Y +
Sbjct: 86 -KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH 144
Query: 725 ILTIPNVKVEDQGEYICRASNDRSALESS-----VTISIQAEPNFTIPLTDKHMDNQADL 779
TI K +Y C A + S V I P T+ +
Sbjct: 145 GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAA 204
Query: 780 TWTCEAFGVP-DVTYSWFRNGE 800
C A V + N
Sbjct: 205 QIVCSASSVDVNFDVFLQHNNT 226
Score = 81.9 bits (202), Expect = 4e-17
Identities = 39/288 (13%), Positives = 76/288 (26%), Gaps = 45/288 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++V +TL C G S EW L ++
Sbjct: 5 PVIEPSVPELVVKPGA-----TVTLRCVGNG----SVEWDGPPSPHWTLYSDG------- 48
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGE----FNLKRAPE 305
S L N+ ++ G+Y C + ++ L ++ + +N+
Sbjct: 49 ----SSSILSTNNA-TFQNTGTYRCTEPGDPLGGSA-AIHL---YVKDPARPWNVLAQEV 99
Query: 306 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 365
+ ++ + C R + S + I + +
Sbjct: 100 VVFEDQDALLPCLLTDPVLEAGVSLVRVR-GRPLMRHTNYSFSPWHGFTIHRAKFIQSQD 158
Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 425
Y C+ LKV P G+ ++ C A
Sbjct: 159 YQCSALMGGRKVMSIS--IRLKVQKVIPG----PPALTLVPAELVRIRGEAAQIVCSASS 212
Query: 426 YPVPSYNWTRRGS---PLPRNAYFEN----FNRILTIPNVKMR--GPY 464
V + + + +P+ + F N L + V + G Y
Sbjct: 213 VDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260
Score = 80.4 bits (198), Expect = 1e-16
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 7/117 (5%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
K G V L CV G S W SP Y + + IL+ N ++ G Y C
Sbjct: 17 KPGATVTLRCVGNG----SVEWDGPPSP-HWTLYSDGSSSILSTNNATFQNTGTYRCTEP 71
Query: 745 NDRSALESSVTISIQAEPN-FTIPLTDKHMDNQADLTWTCEAFG-VPDVTYSWFRNG 799
D +++ + ++ + + + + D C V + S R
Sbjct: 72 GDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVR 128
Score = 63.8 bits (155), Expect = 4e-11
Identities = 24/194 (12%), Positives = 43/194 (22%), Gaps = 28/194 (14%)
Query: 192 FIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 250
+ +VV + D L C +
Sbjct: 92 WNVLAQEVVVFEDQ-----DALLPCLLTDPVLEAGVSLVRVR--------GRPLMRHTNY 138
Query: 251 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES----VQLAFGFIGEFNLKRAPEI 306
I+ + Y C A ++S S VQ L A +
Sbjct: 139 SFSPWHGFTIHRA-KFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELV 197
Query: 307 GNQNWGKAMFC---DPPTNYPGVNYYWARDYFPNFVEEDKRV---FVSYDGALYFSALEQ 360
+ + C N + + + + + L ++
Sbjct: 198 RIRGEAAQIVCSASSVDVN---FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDF 254
Query: 361 IDAGNYSCNVQSKV 374
AGNYSC +
Sbjct: 255 QHAGNYSCVASNVQ 268
Score = 51.5 bits (123), Expect = 4e-07
Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 17/136 (12%)
Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
+ C A + + + ++ IP P P ++V + +
Sbjct: 159 YQCSALM-------GGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEA-----AQI 206
Query: 215 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 274
C A + + + + +A L ++ + G+Y C
Sbjct: 207 VCSASSVDVNFDVFLQHN---NTKLAIPQQSDFHNNRYQKVLTLNLDQV-DFQHAGNYSC 262
Query: 275 KASNKFGSIISESVQL 290
ASN G S S+
Sbjct: 263 VASNVQGK-HSTSMFF 277
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 112 bits (282), Expect = 3e-27
Identities = 47/335 (14%), Positives = 85/335 (25%), Gaps = 51/335 (15%)
Query: 463 PYFIKQPTDVVFDLSKRSILN--DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
+ + + L + +A P + W K D + +
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART------VPGEE 72
Query: 521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 580
+ R G L + ED G+Y C N S++L + L
Sbjct: 73 ETRMWAQDGALWLLPA-LQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQ 130
Query: 581 NQNWGK------AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI 634
+ + V W +D + +K + V L +
Sbjct: 131 ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALE 190
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDK 689
DAG Y C + N + + K K G +
Sbjct: 191 DAGYYRCVLTFAHEGQQYN-------ITRSIELRIKKKKEETIPVIISPLKTISASLGSR 243
Query: 690 VRLECVAF---GYPVPSYNWTRRGSPLPRNAYFEN-----------------FNRILTIP 729
+ + C F G P+ + W +AY L
Sbjct: 244 LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFD 303
Query: 730 NVKVEDQG-EYICRASNDRSALESSVTISIQAEPN 763
V ED ++ C N S ++ +++ +
Sbjct: 304 PVTREDLHMDFKCVVHNTLS--FQTLRTTVKEHHH 336
Score = 98.2 bits (244), Expect = 2e-22
Identities = 43/227 (18%), Positives = 71/227 (31%), Gaps = 32/227 (14%)
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSY-DGALYFSALEQIDAGNYSCNVQSKVSDTGRNG 654
P +N W ++ V ++ + DGAL+ Q D+G Y C ++ +
Sbjct: 52 SPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMS- 110
Query: 655 PFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-----GYPVPSYNWTR 708
L+VF F ++P+ L C W +
Sbjct: 111 --IELRVFENTDAFLP-------FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK 161
Query: 709 RGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE---- 761
L L + +V +ED G Y C + + ++T SI+
Sbjct: 162 DSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKK 221
Query: 762 -----PNFTIPLTDKHMDNQADLTWTCEAF---GVPDVTYSWFRNGE 800
P PL + LT C+ F G P T W+ +
Sbjct: 222 KEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAND 268
Score = 92.8 bits (230), Expect = 2e-20
Identities = 42/305 (13%), Positives = 72/305 (23%), Gaps = 48/305 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILN--DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
+ + + L + +A P + W K D + +
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART------VPGEE 72
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
+ R G L + ED G+Y C N S++L + L
Sbjct: 73 ETRMWAQDGALWLLPA-LQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQ 130
Query: 308 NQNWGK------AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI 361
+ + V W +D + +K + V L +
Sbjct: 131 ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALE 190
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDK 416
DAG Y C + N + + K K G +
Sbjct: 191 DAGYYRCVLTFAHEGQQYN-------ITRSIELRIKKKKEETIPVIISPLKTISASLGSR 243
Query: 417 VRLECVAF---GYPVPSYNWTRRGSPLPRNAYFEN-----------------FNRILTIP 456
+ + C F G P+ + W +AY L
Sbjct: 244 LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFD 303
Query: 457 NVKMR 461
V
Sbjct: 304 PVTRE 308
Score = 84.4 bits (208), Expect = 1e-17
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 686 AGDKVRLEC-------VAFGYPVPSYNWTRRGSPLP----RNAYFENFNRILTIPNVKVE 734
G+ V L C A P + W + S + L + E
Sbjct: 32 EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQE 91
Query: 735 DQGEYICRASNDRSALESSVTISIQAEPNFTIP--LTDKHMDNQADLTWTCEAF-----G 787
D G Y+C N + S+ + + + +P + + C
Sbjct: 92 DSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRD 151
Query: 788 VPDVTYSWFRNGEL 801
DV W+++ L
Sbjct: 152 KTDVKIQWYKDSLL 165
Score = 44.3 bits (104), Expect = 1e-04
Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 16/111 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAG---GYPNPSYEWFKED-------YVQDRLV 239
P I + L R +T+ C G P + W+ + Y R+
Sbjct: 227 PVIISPLKTISASLGSR-----LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVT 281
Query: 240 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
S+ LI + + + + C N + +
Sbjct: 282 EGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSF-QTLRTTV 331
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 109 bits (273), Expect = 3e-26
Identities = 41/230 (17%), Positives = 67/230 (29%), Gaps = 25/230 (10%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQIDAGNYSCNVQSKVS 648
C N W +D V ++ + + L+F + D+G+Y C V++
Sbjct: 27 CPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY 86
Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC------VAFGYPVP 702
K + N F + L C +P
Sbjct: 87 CLRIK---ISAKFVENEP----NLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELP 139
Query: 703 SYNWTRRGSPLP-RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ-- 759
W + PL N +F L + NV + +G Y C AS + +T I+
Sbjct: 140 KLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199
Query: 760 --AEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPDVTYSWFRNGEL 801
E T P+ + + C G W NG +
Sbjct: 200 TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSV 249
Score = 108 bits (270), Expect = 7e-26
Identities = 43/310 (13%), Positives = 80/310 (25%), Gaps = 64/310 (20%)
Query: 486 TLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
C + + W+K+D + R L + VED G
Sbjct: 24 VRPCPLNPNEHKGTITWYKDD------SKTPVSTEQASRIHQHKEKLWFVPAK-VEDSGH 76
Query: 545 YHCKASNKFGSIISESVQL-------AFGFIGEFNLKRAPEIGNQNW--GKAMFCDPPTN 595
Y+C N + + + + K+ + M N
Sbjct: 77 YYCVVRNSSYCL-RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNEN 135
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS---------- 645
W +D P + D F L + + GNY+C+
Sbjct: 136 NELPKLQWYKDCKP--LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPIT 193
Query: 646 ---KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP 702
+ N P P+ V P + ++ G +++L C G
Sbjct: 194 RVIEFITLEENKPTRPVIVSPANETMEVD--------------LGSQIQLICNVTGQLSD 239
Query: 703 SYNWTRRGSPLPRNAYFENFNR----------------ILTIPNVKVED-QGEYICRASN 745
W GS + + + +L I ++ + + C A N
Sbjct: 240 IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKN 299
Query: 746 DRSALESSVT 755
+ +
Sbjct: 300 THGIDAAYIQ 309
Score = 90.9 bits (225), Expect = 4e-20
Identities = 47/292 (16%), Positives = 79/292 (27%), Gaps = 53/292 (18%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS-YDGALYFSALEQIDAGNYSCNVQSKVS 375
C N W +D V ++ + + L+F + D+G+Y C V++
Sbjct: 27 CPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY 86
Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC------VAFGYPVP 429
K + N F + L C +P
Sbjct: 87 CLRIK---ISAKFVENEP----NLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELP 139
Query: 430 SYNWTRRGSPLP-RNAYFENFNRILTIPNVKM--RGPY------------FIKQPTDVVF 474
W + PL N +F L + NV RG Y +
Sbjct: 140 KLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI 199
Query: 475 DLSKRSIL-----------------NDITLSCYAGGYPNPSYEWFK------EDYVQDRL 511
L + + I L C G + W ED
Sbjct: 200 TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGE 259
Query: 512 VANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
++ ++KR + L I++ + + C A N G + +QL
Sbjct: 260 DYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI-DAAYIQL 310
Score = 90.9 bits (225), Expect = 5e-20
Identities = 42/294 (14%), Positives = 76/294 (25%), Gaps = 66/294 (22%)
Query: 213 TLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
C + + W+K+D + R L + VED G
Sbjct: 24 VRPCPLNPNEHKGTITWYKDD------SKTPVSTEQASRIHQHKEKLWFVPAK-VEDSGH 76
Query: 272 YHCKASNKFGSIISESVQL-------AFGFIGEFNLKRAPEIGNQNW--GKAMFCDPPTN 322
Y+C N + + + + K+ + M N
Sbjct: 77 YYCVVRNSSYCL-RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNEN 135
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS---------- 372
W +D P + D F L + + GNY+C+
Sbjct: 136 NELPKLQWYKDCKP--LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPIT 193
Query: 373 ---KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP 429
+ N P P+ V P + ++ G +++L C G
Sbjct: 194 RVIEFITLEENKPTRPVIVSPANETMEVD--------------LGSQIQLICNVTGQLSD 239
Query: 430 SYNWTRRGSPLPRNAYFENFNR----------------ILTIPNVKMR---GPY 464
W GS + + + +L I ++ R P+
Sbjct: 240 IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPF 293
Score = 70.9 bits (173), Expect = 2e-13
Identities = 20/130 (15%), Positives = 34/130 (26%), Gaps = 15/130 (11%)
Query: 686 AGDKVRLECVAFGYPVP-SYNWTRRGSPLP----RNAYFENFNRILTIPNVKVEDQGEYI 740
A + C + W + S P + + L KVED G Y
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYY 78
Query: 741 CRASNDRSALESSVTISI-QAEPNFTIPLTDK-----HMDNQADLT----WTCEAFGVPD 790
C N L ++ + EPN + L +
Sbjct: 79 CVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL 138
Query: 791 VTYSWFRNGE 800
W+++ +
Sbjct: 139 PKLQWYKDCK 148
Score = 48.6 bits (115), Expect = 4e-06
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 211 DITLSCYAGGYPNPSYEWFK------EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR 264
I L C G + W ED ++ ++KR + L I++
Sbjct: 226 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 285
Query: 265 QVEDRGSYHCKASNKFGSIISESVQL 290
+ + C A N G + +QL
Sbjct: 286 SRFYKHPFTCFAKNTHGI-DAAYIQL 310
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 109 bits (274), Expect = 3e-26
Identities = 45/325 (13%), Positives = 88/325 (27%), Gaps = 37/325 (11%)
Query: 474 FDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLII 533
+ + + + + W+ +D + L + R + L
Sbjct: 25 ARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEE-PINFRLPENRISKEKDVLWF 83
Query: 534 NDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFIGEFNLKRAPEIGNQNWGK 586
P + D G+Y C N + + + K E G Q
Sbjct: 84 R-PTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITC 142
Query: 587 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSK 646
+ W + ++ + L F + GNY+C V
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYK---IQNFNNVIPEGMNLSFLIALISNNGNYTCVV--T 197
Query: 647 VSDTGRNGPF---FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF----GY 699
+ GR +KV ++ + G+++ + C +
Sbjct: 198 YPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMD 257
Query: 700 PVPSYNWTRRGSPL--------------PRNAYFENFNRILTIPNVKVEDQG-EYICRAS 744
WT G E +IL+I V ED Y+C A
Sbjct: 258 SRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR 317
Query: 745 NDRSALESSVTISIQAE-PNFTIPL 768
+ + + + + + P +T+ L
Sbjct: 318 SAKGEVAKAAKVKQKVPAPRYTVEL 342
Score = 100 bits (250), Expect = 4e-23
Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 32/245 (13%)
Query: 589 FCDPPTNYPGVNYYWARDYFPNFVEE-------DKRVFVSYDGALYFSALEQIDAGNYSC 641
F + G+ W +EE + R+ L+F D GNY+C
Sbjct: 38 FNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE-KDVLWFRPTLLNDTGNYTC 96
Query: 642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR---LECVAFG 698
+++ T + FPL+V P P ++ ++
Sbjct: 97 MLRN---TTYCSKVAFPLEVVQKD--SCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 699 YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND----RSALESSV 754
P+ W + L+ + + G Y C + L ++
Sbjct: 152 SVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTL 211
Query: 755 TISIQAEPNFTIPLTDKHMDNQ--------ADLTWTCEAF----GVPDVTYSWFRNGELG 802
T+ + P +P ++ +L C + W +G+
Sbjct: 212 TVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271
Query: 803 HQMTD 807
+T
Sbjct: 272 DDITI 276
Score = 83.8 bits (206), Expect = 2e-17
Identities = 38/295 (12%), Positives = 72/295 (24%), Gaps = 38/295 (12%)
Query: 201 FDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLII 260
+ + + + + W+ +D + L + R + L
Sbjct: 25 ARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEE-PINFRLPENRISKEKDVLWF 83
Query: 261 NDPRQVEDRGSYHCKASNKFGSI-------ISESVQLAFGFIGEFNLKRAPEIGNQNWGK 313
P + D G+Y C N + + + K E G Q
Sbjct: 84 R-PTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITC 142
Query: 314 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSK 373
+ W + ++ + L F + GNY+C V
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYK---IQNFNNVIPEGMNLSFLIALISNNGNYTCVV--T 197
Query: 374 VSDTGRNGPF---FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF----GY 426
+ GR +KV ++ + G+++ + C +
Sbjct: 198 YPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMD 257
Query: 427 PVPSYNWTRRGSPL--------------PRNAYFENFNRILTIPNVKMR---GPY 464
WT G E +IL+I V Y
Sbjct: 258 SRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSY 312
Score = 81.5 bits (200), Expect = 1e-16
Identities = 40/301 (13%), Positives = 79/301 (26%), Gaps = 62/301 (20%)
Query: 316 FCDPPTNYPGVNYYWARDYFPNFVEE-------DKRVFVSYDGALYFSALEQIDAGNYSC 368
F + G+ W +EE + R+ L+F D GNY+C
Sbjct: 38 FNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE-KDVLWFRPTLLNDTGNYTC 96
Query: 369 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR---LECVAFG 425
+++ T + FPL+V P P ++ ++
Sbjct: 97 MLRN---TTYCSKVAFPLEVVQKD--SCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 426 YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY------------------- 464
P+ W + L+ + G Y
Sbjct: 152 SVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTL 211
Query: 465 --------------FIKQPTDVVFDLSKRSILNDITLSCYA----GGYPNPSYEWFKEDY 506
I P D V + ++ ++ + C W +
Sbjct: 212 TVKVVGSPKNAVPPVIHSPNDHV--VYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGK 269
Query: 507 VQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQ 562
D + ++ S L I + + SY C A + G ++++ +
Sbjct: 270 KPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGE-VAKAAK 328
Query: 563 L 563
+
Sbjct: 329 V 329
Score = 68.0 bits (165), Expect = 3e-12
Identities = 34/304 (11%), Positives = 63/304 (20%), Gaps = 80/304 (26%)
Query: 411 PKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR---NAYFENFNRI------LTIPNVKMR 461
P ++ + W + NRI L +
Sbjct: 30 PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN 89
Query: 462 --GPY----------------------------FIKQPTDVVFDLSKRSILNDITLSCYA 491
G Y +K P ++ + + Y
Sbjct: 90 DTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYF 149
Query: 492 GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASN 551
P+ W+ Y G NL + + G+Y C +
Sbjct: 150 PSSVKPTITWYMGCYKIQN----------FNNVIPEGMNLSFLIA-LISNNGNYTCVVTY 198
Query: 552 KFGSI---ISESVQL---------AFGFIGEFNLKRAPEIGNQNWG----KAMFCDPPTN 595
++ ++ + I N E F +
Sbjct: 199 PENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDS 258
Query: 596 YPGVNYYWARD-------YFPNFVEEDKRVFVSYDGA----LYFSALEQID-AGNYSCNV 643
V +W D + E + D L + D +Y C+
Sbjct: 259 RNEV--WWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA 316
Query: 644 QSKV 647
+S
Sbjct: 317 RSAK 320
Score = 63.3 bits (153), Expect = 8e-11
Identities = 27/218 (12%), Positives = 51/218 (23%), Gaps = 41/218 (18%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 244
K +K P ++ + + Y P+ W+ Y
Sbjct: 116 KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN------- 168
Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI---ISESVQL---------AF 292
G NL + + G+Y C + ++ ++ +
Sbjct: 169 ---FNNVIPEGMNLSFLIA-LISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVP 224
Query: 293 GFIGEFNLKRAPEIGNQNWG----KAMFCDPPTNYPGVNYYWARD-------YFPNFVEE 341
I N E F + V +W D + E
Sbjct: 225 PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEV--WWTIDGKKPDDITIDVTINE 282
Query: 342 DKRVFVSYDGA----LYFSALEQID-AGNYSCNVQSKV 374
+ D L + D +Y C+ +S
Sbjct: 283 SISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAK 320
Score = 61.8 bits (149), Expect = 3e-10
Identities = 18/145 (12%), Positives = 32/145 (22%), Gaps = 29/145 (20%)
Query: 686 AGDKVRLECVAF-----------GYPVPSYNWTRRGSPLPR---NAYFENFNRI------ 725
+ R++C F + W + NRI
Sbjct: 21 EDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDV 80
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP----NFTIPLTDKHMDNQADLTW 781
L + D G Y C N + + + + + + K
Sbjct: 81 LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140
Query: 782 TCEAF-----GVPDVTYSWFRNGEL 801
TC T +W+
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYK 165
Score = 41.4 bits (96), Expect = 0.001
Identities = 15/142 (10%), Positives = 40/142 (28%), Gaps = 14/142 (9%)
Query: 157 CEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSC 216
C + + + RT + + +P + ++ ++ + C
Sbjct: 194 CVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVY-----EKEPGEELLIPC 248
Query: 217 YA----GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQVED 268
W + D + ++ S L I +
Sbjct: 249 TVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDL 308
Query: 269 RGSYHCKASNKFGSIISESVQL 290
+ SY C A + G ++++ ++
Sbjct: 309 KRSYVCHARSAKGE-VAKAAKV 329
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 105 bits (263), Expect = 4e-26
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 4/118 (3%)
Query: 685 KAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 742
+ V L+C WT+ G L + N I + ED GEY C
Sbjct: 16 DSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNAS-NMEYRINKPRAEDSGEYHCV 74
Query: 743 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ +++ TI ++A P+ T ++ + D C++ G P + W +
Sbjct: 75 YHFVSAP-KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKEN 131
Score = 97.2 bits (242), Expect = 2e-23
Identities = 38/182 (20%), Positives = 57/182 (31%), Gaps = 41/182 (22%)
Query: 412 KAGDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RG----- 462
+ V L+C WT+ G L + N I + G
Sbjct: 16 DSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNAS-NMEYRINKPRAEDSGEYHCV 74
Query: 463 ------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE 504
P + + D + C + GYP+P + W K+
Sbjct: 75 YHFVSAPKANATIEVKAAPDITGHKRSENKNEGQ-----DAMMYCKSVGYPHPEWMWRKK 129
Query: 505 DYVQDRLVANLIDPLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESV 561
+ V I S + F ++ N L I + + ED G Y C A+N GS S S
Sbjct: 130 ----ENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS-ASVST 184
Query: 562 QL 563
L
Sbjct: 185 VL 186
Score = 78.4 bits (193), Expect = 8e-17
Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 40/180 (22%)
Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC--NVQSKVSDTGRNG 654
+ YW ++ + ++ + + + D+G Y C + S
Sbjct: 33 TLMYSYWTKNGVE--LTATRKN--ASNMEYRINKPRAEDSGEYHCVYHFVSAPKANAT-- 86
Query: 655 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRR 709
++V + G + C + GYP P + W ++
Sbjct: 87 ----IEV-------------KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKK 129
Query: 710 GSPLP-----RNAYF----ENFNRILTIPNVKV-EDQGEYICRASNDRSALESSVTISIQ 759
+ + + F + L I N+++ ED GEY C A+N + S + ++
Sbjct: 130 ENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
Score = 72.2 bits (177), Expect = 1e-14
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P + + D + C + GYP+P + W K++ V I S +
Sbjct: 93 PDITGHKRSENKNEGQ-----DAMMYCKSVGYPHPEWMWRKKE----NGVFEEISNSSGR 143
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
F ++ N L I + + ED G Y C A+N GS S S L
Sbjct: 144 FFIINKENYTELNIVNLQITEDPGEYECNATNSIGS-ASVSTVL 186
Score = 66.0 bits (161), Expect = 1e-12
Identities = 43/202 (21%), Positives = 61/202 (30%), Gaps = 45/202 (22%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLS 247
P + ++ D +TL C + W K L+
Sbjct: 4 PRIVTSEEVIIRDSLL-----PVTLQCNLTSSSHTLMYSYWTKNG-----------VELT 47
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 307
R S IN PR ED G YHC S + + +K AP+I
Sbjct: 48 ATRKNASNMEYRINKPRA-EDSGEYHCVYHF--VSAPKANATI--------EVKAAPDIT 96
Query: 308 ------NQNWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDK---RVFVSYDGALY-- 354
N+N G+ AM C YP + W + F E R F+
Sbjct: 97 GHKRSENKNEGQDAMMYCK-SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTEL 155
Query: 355 --FSALEQIDAGNYSCNVQSKV 374
+ D G Y CN + +
Sbjct: 156 NIVNLQITEDPGEYECNATNSI 177
Score = 56.0 bits (135), Expect = 5e-09
Identities = 21/160 (13%), Positives = 47/160 (29%), Gaps = 42/160 (26%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC--NVQSKVSDTGRNG 381
+ YW ++ + ++ + + + D+G Y C + S
Sbjct: 33 TLMYSYWTKNGVE--LTATRKN--ASNMEYRINKPRAEDSGEYHCVYHFVSAPKANAT-- 86
Query: 382 PFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRR 436
++V + G + C + GYP P + W ++
Sbjct: 87 ----IEV-------------KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKK 129
Query: 437 GSPLP-----RNAYF----ENFNRILTIPNVKMR---GPY 464
+ + + F + L I N+++ G Y
Sbjct: 130 ENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEY 169
Score = 34.1 bits (78), Expect = 0.096
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 759 QAEPNFTIPLTDKHMDNQADLTWTCEAFG--VPDVTYSWFRNGE 800
Q EP D+ +T C + W +NG
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGV 44
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 104 bits (261), Expect = 8e-26
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLP----RNAYFENFNRILTIPNVKVEDQGEYI 740
+ C YP P +WTR + R + EN ++LTI +V+ D G Y
Sbjct: 20 LVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN-GQLLTILSVEDSDDGIYC 78
Query: 741 CRASND-RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
C A+N A+ES + ++ +P T P + + C G P + SW +
Sbjct: 79 CTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGD 138
Query: 800 E 800
Sbjct: 139 S 139
Score = 99.8 bits (249), Expect = 3e-24
Identities = 44/185 (23%), Positives = 61/185 (32%), Gaps = 51/185 (27%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLP----RNAYFENFNRILTIPNVKMR------ 461
+ C YP P +WTR + R + EN ++LTI +V+
Sbjct: 20 LVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN-GQLLTILSVEDSDDGIYC 78
Query: 462 ---------------------GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYE 500
P + P +V L C G P PS
Sbjct: 79 CTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGL-----KAVLPCTTMGNPKPSVS 133
Query: 501 WFKEDYVQDRLVANLIDPL-SDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 558
W K D L + R L G+L I++ Q ED G Y C A N G+ S
Sbjct: 134 WIKGD-----------SALRENSRIAVLESGSLRIHNV-QKEDAGQYRCVAKNSLGTAYS 181
Query: 559 ESVQL 563
+ V+L
Sbjct: 182 KLVKL 186
Score = 96.7 bits (241), Expect = 4e-23
Identities = 42/201 (20%), Positives = 69/201 (34%), Gaps = 36/201 (17%)
Query: 184 DKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 243
+K+P+ P V + + T C YP P W + LI
Sbjct: 2 EKLPKAPVITTPLETVDALVEE-----VATFMCAVESYPQPEISWTRNK--------ILI 48
Query: 244 DPLSDKRFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 301
D R+++ +G L I D G Y C A+N G + L +K
Sbjct: 49 KL-FDTRYSIRENGQLLTILSVED-SDDGIYCCTANNGVGGAVESCGAL--------QVK 98
Query: 302 RAPEIGNQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 353
P+I G + C P + W + + E+ R+ V G+L
Sbjct: 99 MKPKITRPPINVKIIEGLKAVLPC-TTMGNPKPSVSWIKGDSA--LRENSRIAVLESGSL 155
Query: 354 YFSALEQIDAGNYSCNVQSKV 374
+++ DAG Y C ++ +
Sbjct: 156 RIHNVQKEDAGQYRCVAKNSL 176
Score = 92.1 bits (229), Expect = 1e-21
Identities = 40/195 (20%), Positives = 64/195 (32%), Gaps = 36/195 (18%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P V + + T C YP P W + LI D
Sbjct: 8 PVITTPLETVDALVEE-----VATFMCAVESYPQPEISWTRNK--------ILIKL-FDT 53
Query: 523 RFTL--SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIG 580
R+++ +G L I D G Y C A+N G + L +K P+I
Sbjct: 54 RYSIRENGQLLTILSVED-SDDGIYCCTANNGVGGAVESCGAL--------QVKMKPKIT 104
Query: 581 NQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE 632
G + C P + W + + E+ R+ V G+L ++
Sbjct: 105 RPPINVKIIEGLKAVLPC-TTMGNPKPSVSWIKGDSA--LRENSRIAVLESGSLRIHNVQ 161
Query: 633 QIDAGNYSCNVQSKV 647
+ DAG Y C ++ +
Sbjct: 162 KEDAGQYRCVAKNSL 176
Score = 87.5 bits (217), Expect = 7e-20
Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 12/167 (7%)
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 655
YP W R+ + + + L ++E D G Y C + V +
Sbjct: 34 YPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG 93
Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 715
+K+ P + P N E G K L C G P PS +W + S L
Sbjct: 94 ALQVKMKPK--ITRP--PIN--VKIIE----GLKAVLPCTTMGNPKPSVSWIKGDSALRE 143
Query: 716 NAYFE-NFNRILTIPNVKVEDQGEYICRASNDR-SALESSVTISIQA 760
N+ + L I NV+ ED G+Y C A N +A V + ++
Sbjct: 144 NSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
Score = 74.0 bits (182), Expect = 3e-15
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 19/103 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 248
P + P +V L C G P PS W K D L +
Sbjct: 101 PKITRPPINVKIIEGL-----KAVLPCTTMGNPKPSVSWIKGD-----------SALREN 144
Query: 249 KRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
R L G+L I++ Q ED G Y C A N G+ S+ V+L
Sbjct: 145 SRIAVLESGSLRIHNV-QKEDAGQYRCVAKNSLGTAYSKLVKL 186
Score = 62.1 bits (151), Expect = 3e-11
Identities = 32/138 (23%), Positives = 48/138 (34%), Gaps = 11/138 (7%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 382
YP W R+ + + + L ++E D G Y C + V +
Sbjct: 34 YPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG 93
Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 442
+K+ P + P N E G K L C G P PS +W + S L
Sbjct: 94 ALQVKMKPK--ITRP--PIN--VKIIE----GLKAVLPCTTMGNPKPSVSWIKGDSALRE 143
Query: 443 NAYFE-NFNRILTIPNVK 459
N+ + L I NV+
Sbjct: 144 NSRIAVLESGSLRIHNVQ 161
Score = 44.7 bits (106), Expect = 3e-05
Identities = 11/43 (25%), Positives = 14/43 (32%)
Query: 758 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ P T PL + T+ C P SW RN
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKI 46
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 104 bits (261), Expect = 8e-26
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 5/121 (4%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
G+ C A G P + +G + E LTI N +ED G Y
Sbjct: 15 SVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYR 74
Query: 741 CRASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
C+A++ + E++V + I + F ++ + D C P SW +
Sbjct: 75 CQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHN 134
Query: 800 E 800
E
Sbjct: 135 E 135
Score = 95.2 bits (237), Expect = 1e-22
Identities = 32/179 (17%), Positives = 50/179 (27%), Gaps = 46/179 (25%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM--RG--- 462
G+ C A G P + +G + E LTI N + G
Sbjct: 15 SVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYR 74
Query: 463 ----------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYE 500
F + + F + D + C P P+
Sbjct: 75 CQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGE-----DAEVVCRVSSSPAPAVS 129
Query: 501 WFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 558
W + + +SD RF L+ NL I + + D G Y C+ + I
Sbjct: 130 WLYHN--------EEVTTISDNRFAMLANNNLQILNINK-SDEGIYRCEGRVEARGEID 179
Score = 82.9 bits (205), Expect = 2e-18
Identities = 29/169 (17%), Positives = 54/169 (31%), Gaps = 18/169 (10%)
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVSDTGR 652
P ++ + +RV V +G L DAG Y C T
Sbjct: 29 EPESIDWYNPQGEK--IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQE 86
Query: 653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSP 712
L+++ F+++ + + F + G+ + C P P+ +W
Sbjct: 87 A--TVVLEIYQKLTFREV--VSP--QEFKQ----GEDAEVVCRVSSSPAPAVSWLYHNEE 136
Query: 713 LPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
+ + + N L I N+ D+G Y C + I +
Sbjct: 137 VTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 185
Score = 81.4 bits (201), Expect = 7e-18
Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 37/198 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+ V + + +C A G P + +S +
Sbjct: 3 LQVTISLSKVELSVGE-----SKFFTCTAIGEPESIDWYNP----------QGEKIISTQ 47
Query: 250 RFTL----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
R + L I + +ED G Y C+A++ G +V L + +
Sbjct: 48 RVVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKGQTQEATVVL--------EIYQKLT 98
Query: 306 IGNQ------NWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 357
G+ A C ++ P W D R + + L
Sbjct: 99 FREVVSPQEFKQGEDAEVVCR-VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 157
Query: 358 LEQIDAGNYSCNVQSKVS 375
+ + D G Y C + +
Sbjct: 158 INKSDEGIYRCEGRVEAR 175
Score = 81.4 bits (201), Expect = 7e-18
Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 37/198 (18%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
+ V + + +C A G P + +S +
Sbjct: 3 LQVTISLSKVELSVGE-----SKFFTCTAIGEPESIDWYNP----------QGEKIISTQ 47
Query: 523 RFTL----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 578
R + L I + +ED G Y C+A++ G +V L + +
Sbjct: 48 RVVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKGQTQEATVVL--------EIYQKLT 98
Query: 579 IGNQ------NWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 630
G+ A C ++ P W D R + + L
Sbjct: 99 FREVVSPQEFKQGEDAEVVCR-VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 157
Query: 631 LEQIDAGNYSCNVQSKVS 648
+ + D G Y C + +
Sbjct: 158 INKSDEGIYRCEGRVEAR 175
Score = 69.4 bits (170), Expect = 9e-14
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 15/97 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + + F + D + C P P+ W + + +SD
Sbjct: 97 LTFREVVSPQEFKQGE-----DAEVVCRVSSSPAPAVSWLYHN--------EEVTTISDN 143
Query: 250 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 285
RF L+ NL I + + D G Y C+ + I
Sbjct: 144 RFAMLANNNLQILNINK-SDEGIYRCEGRVEARGEID 179
Score = 41.3 bits (97), Expect = 4e-04
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 760 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
A TI L+ + +TC A G P+ + GE
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGE 41
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 104 bits (260), Expect = 9e-26
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRN------AYFENFNRILTIPNVKVEDQGEYI 740
G V+L C G P W + G+ + +++ L++ +V+ D G Y
Sbjct: 17 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYW 76
Query: 741 CRASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD-VTYSWFRN 798
C+ + + + V ++++ P FT+ D + A +CEA G P+ VT W+R
Sbjct: 77 CQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG 136
Query: 799 GE 800
Sbjct: 137 TT 138
Score = 87.9 bits (218), Expect = 3e-20
Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 55/184 (29%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRN------AYFENFNRILTIPNVKMR--G--- 462
G V+L C G P W + G+ + +++ L++ +V+ G
Sbjct: 17 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYW 76
Query: 463 ----------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SY 499
P+F +P D+ + LSC A G P P +
Sbjct: 77 CQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPN-----APFQLSCEAVGPPEPVTI 131
Query: 500 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 559
W++ + + ++N V + C+A N G S
Sbjct: 132 VWWRGT-----------TKIGGP----APSPSVLNVT-GVTQSTMFSCEAHNLKGLASSR 175
Query: 560 SVQL 563
+ +
Sbjct: 176 TATV 179
Score = 77.9 bits (192), Expect = 1e-16
Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 32/193 (16%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
G + P + + + L+C G P +W K+ ++ L
Sbjct: 2 GLKLMGAPVKLTVSQGQ-----PVKLNCSVEGMEEPDIQWVKDG--------AVVQNLDQ 48
Query: 249 KRFTLSG----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP 304
+S G L + + D G Y C+ + + IS+ V L + F P
Sbjct: 49 LYIPVSEQHWIGFLSLKSVER-SDAGRYWCQVEDGGETEISQPVWLTVEGVPFF--TVEP 105
Query: 305 EIGNQNWGK-AMF-CDPPTNYPG-VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI 361
+ C P V W R ++ +
Sbjct: 106 KDLAVPPNAPFQLSC-EAVGPPEPVTIVWWRG--------TTKIGGPAPSPSVLNVTGVT 156
Query: 362 DAGNYSCNVQSKV 374
+ +SC +
Sbjct: 157 QSTMFSCEAHNLK 169
Score = 76.4 bits (188), Expect = 3e-16
Identities = 34/171 (19%), Positives = 55/171 (32%), Gaps = 38/171 (22%)
Query: 603 WARDYFPNFVEEDKRVFVS---YDGALYFSALEQIDAGNYSC----NVQSKVSDTGRNGP 655
W +D + + VS + G L ++E+ DAG Y C ++++S
Sbjct: 36 WVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW--- 92
Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVP-SYNWTRR 709
L V F PK +L C A G P P + W R
Sbjct: 93 ---LTV-------------EGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG 136
Query: 710 GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 759
+ + A + V + C A N + S + T+ +Q
Sbjct: 137 TTKIGGPA-----PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
Score = 62.5 bits (152), Expect = 2e-11
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 22/102 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSD 248
P+F +P D+ + LSC A G P P + W++ +
Sbjct: 99 PFFTVEPKDLAVPPN-----APFQLSCEAVGPPEPVTIVWWRGT-----------TKIGG 142
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ ++N V + C+A N G S + +
Sbjct: 143 P----APSPSVLNVT-GVTQSTMFSCEAHNLKGLASSRTATV 179
Score = 52.9 bits (127), Expect = 4e-08
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 35/148 (23%)
Query: 330 WARDYFPNFVEEDKRVFVS---YDGALYFSALEQIDAGNYSC----NVQSKVSDTGRNGP 382
W +D + + VS + G L ++E+ DAG Y C ++++S
Sbjct: 36 WVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW--- 92
Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVP-SYNWTRR 436
L V F PK +L C A G P P + W R
Sbjct: 93 ---LTV-------------EGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG 136
Query: 437 GSPLPRNAYFENFNRILTIPNVKMRGPY 464
+ + +L + V +
Sbjct: 137 TTKIGGP---APSPSVLNVTGVTQSTMF 161
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 106 bits (266), Expect = 9e-26
Identities = 48/283 (16%), Positives = 79/283 (27%), Gaps = 46/283 (16%)
Query: 485 ITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 543
+TL C P + S +WF S + I V D G
Sbjct: 19 VTLHCEVLHLPGSSSTQWFLNG----------------TATQTSTPSYRIT-SASVNDSG 61
Query: 544 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 603
Y C+ S S+ +QL G L+ + + + A+ C + N +
Sbjct: 62 EYRCQRGL---SGRSDPIQLEI-HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLY 117
Query: 604 ARDYFPNFVEEDKRV-FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 662
R+ K F ++ L G Y C+ K + V
Sbjct: 118 YRN--------GKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKH---RYTSAGISVTV- 165
Query: 663 PHSNFQQLKFPNNFPKTFPEAP-KAGDKVRLECVAFGYPV-PSYNWTRRGSPLPRNAYFE 720
+ FP +P G+ V L C P +
Sbjct: 166 ------KELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR 219
Query: 721 NFNRILTIPNVKVEDQGEYICRASNDRSALES---SVTISIQA 760
N + I + ED G Y C A+ + + + + +
Sbjct: 220 NTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVLG 262
Score = 96.1 bits (239), Expect = 3e-22
Identities = 35/220 (15%), Positives = 71/220 (32%), Gaps = 39/220 (17%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 648
C+ + W + S + ++ D+G Y C S S
Sbjct: 23 CEVLHLPGSSSTQWFLN--------GTATQTS-TPSYRITSASVNDSGEYRCQRGLSGRS 73
Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 707
D L++ Q+ + F E G+ + L C A+ V + +
Sbjct: 74 DP------IQLEIHRGWLLLQVS-----SRVFTE----GEPLALRCHAWKDKLVYNVLYY 118
Query: 708 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ---AEPNF 764
R G F ++N LTI + G Y C + ++++++ P
Sbjct: 119 RNGKAFK----FFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVL 174
Query: 765 TIPLTDKHMDNQADLTWTCEAFGVPD-----VTYSWFRNG 799
+T ++ +T +CE + + +S++
Sbjct: 175 NASVTSPLLEGN-LVTLSCETKLLLQRPGLQLYFSFYMGS 213
Score = 79.6 bits (196), Expect = 2e-16
Identities = 44/260 (16%), Positives = 70/260 (26%), Gaps = 45/260 (17%)
Query: 212 ITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+TL C P + S +WF S + I V D G
Sbjct: 19 VTLHCEVLHLPGSSSTQWFLNG----------------TATQTSTPSYRIT-SASVNDSG 61
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 330
Y C+ S S+ +QL G L+ + + + A+ C + N +
Sbjct: 62 EYRCQRGL---SGRSDPIQLEI-HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLY 117
Query: 331 ARDYFPNFVEEDKRV-FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 389
R+ K F ++ L G Y C+ K + V
Sbjct: 118 YRN--------GKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKH---RYTSAGISVTV- 165
Query: 390 PHSNFQQLKFPNNFPKTFPEAP-KAGDKVRLECVAFGYPV-PSYNWTRRGSPLPRNAYFE 447
+ FP +P G+ V L C P +
Sbjct: 166 ------KELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR 219
Query: 448 NFNRILTIPNVKM--RGPYF 465
N + I + G Y+
Sbjct: 220 NTSSEYQILTARREDSGLYW 239
Score = 78.4 bits (193), Expect = 3e-16
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 687 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
+ V L C P S W G+ + I + V D GEY C+
Sbjct: 16 EETVTLHCEVLHLPGSSSTQWFLNGTATQTS------TPSYRITSASVNDSGEYRCQRGL 69
Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGEL 801
S + + I + ++ + L C A+ ++RNG+
Sbjct: 70 --SGRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKA 123
Score = 78.0 bits (192), Expect = 4e-16
Identities = 36/272 (13%), Positives = 68/272 (25%), Gaps = 77/272 (28%)
Query: 414 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY------ 464
+ V L C P S W G+ + I + + G Y
Sbjct: 16 EETVTLHCEVLHLPGSSSTQWFLNGTATQTS------TPSYRITSASVNDSGEYRCQRGL 69
Query: 465 ---------------FIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQ 508
+ Q + VF + + L C+A + +++
Sbjct: 70 SGRSDPIQLEIHRGWLLLQVSSRVFTEGE-----PLALRCHAWKDKLVYNVLYYRNG--- 121
Query: 509 DRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI 568
+F NL I + G+YHC K S + + +
Sbjct: 122 -----------KAFKFFHWNSNLTILKT-NISHNGTYHCSGMGKHRY-TSAGISVT---V 165
Query: 569 GEFNLKRAPEIGNQNWGKA-------MFCD----PPTNYPGVNYYWARDYFPNFVEEDKR 617
E L AP + + C+ + + + K
Sbjct: 166 KE--LFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMG--------SKT 215
Query: 618 V-FVSYDGALYFSALEQIDAGNYSCNVQSKVS 648
+ + + D+G Y C ++
Sbjct: 216 LRGRNTSSEYQILTARREDSGLYWCEAATEDG 247
Score = 55.7 bits (134), Expect = 1e-08
Identities = 26/199 (13%), Positives = 54/199 (27%), Gaps = 47/199 (23%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
+ + Q + VF + + L C+A + +++
Sbjct: 83 GWLLLQVSSRVFTEGE-----PLALRCHAWKDKLVYNVLYYRNG--------------KA 123
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN 308
+F NL I + G+YHC K S + + + E L AP +
Sbjct: 124 FKFFHWNSNLTILKT-NISHNGTYHCSGMGKHRY-TSAGISVT---VKE--LFPAPVLNA 176
Query: 309 QNWGKA-------MFCD----PPTNYPGVNYYWARDYFPNFVEEDKRV-FVSYDGALYFS 356
+ C+ + + + K + +
Sbjct: 177 SVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMG--------SKTLRGRNTSSEYQIL 228
Query: 357 ALEQIDAGNYSCNVQSKVS 375
+ D+G Y C ++
Sbjct: 229 TARREDSGLYWCEAATEDG 247
Score = 53.0 bits (127), Expect = 1e-07
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDP 245
P T + + + +TLSC P + + Y+ + +
Sbjct: 169 FPAPVLNASVTSPLLEGN------LVTLSCETKLLLQRPGLQLYFSFYMGSKTL------ 216
Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
R + I + ED G Y C+A+ + G+++ S +L
Sbjct: 217 ----RGRNTSSEYQILTA-RREDSGLYWCEAATEDGNVLKRSPEL 256
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 103 bits (258), Expect = 3e-25
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 11/126 (8%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
K G+ +L C G P+P W R G L ++ + + LT+ + ED+G Y
Sbjct: 20 KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 741 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA-----DLTWTCEAFGVPDVTYSW 795
C A+N+ +E+S + +QA P F K + L G P +W
Sbjct: 80 CIATNEVGEVETSSKLLLQATPQFHPGYPLK--EKYYGAVGSTLRLHVMYIGRPVPAMTW 137
Query: 796 FRNGEL 801
F +L
Sbjct: 138 FHGQKL 143
Score = 88.6 bits (220), Expect = 2e-20
Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 44/181 (24%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKMR--GPY- 464
K G+ +L C G P+P W R G L ++ + + LT+ + G Y
Sbjct: 20 KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 465 -----------------FIKQPTDVVFDLSKRSIL----NDITLSCYAGGYPNPSYEWFK 503
P K + + L G P P+ WF
Sbjct: 80 CIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH 139
Query: 504 EDYVQDRLVANLIDPL-SDKRFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSIIS 558
L + + T+ +L++ + ++ G Y + SN FG++ +
Sbjct: 140 GQ-----------KLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDA 188
Query: 559 E 559
Sbjct: 189 I 189
Score = 82.4 bits (204), Expect = 4e-18
Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 26/176 (14%)
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC---NVQSKVSD 649
P + W R + + ++ +S DG L EQ D G Y+C N +V
Sbjct: 34 RPLPDIKWYRFGKE--LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91
Query: 650 TGRNGPFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR 708
+ + L + G +RL + G PVP+ W
Sbjct: 92 SSK------LLLQATPQFHPGYPLKEK--YYGAV----GSTLRLHVMYIGRPVPAMTWFH 139
Query: 709 RGSPLPRNAYF----ENFNRILTIPNV-KVEDQGEYICRASNDRSALESSVTISIQ 759
L + L + NV + G+Y + SN +++ + + IQ
Sbjct: 140 GQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 72.0 bits (177), Expect = 1e-14
Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 33/197 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P K+ DV L + LSC G P P +W++ +
Sbjct: 8 PGIRKEMKDVTTKLGE-----AAQLSCQIVGRPLPDIKWYRFG--------KELIQSRKY 54
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR-- 302
+ + G L + + ED G Y C A+N+ G + + +Q F + LK
Sbjct: 55 KMSSDGRTHTLTVMTE-EQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKY 113
Query: 303 APEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY----FSA 357
+G+ P W ++ + + + +
Sbjct: 114 YGAVGS----TLRLHV-MYIGRPVPAMTWFHGQKL--LQNSENITIENTEHYTHLVMKNV 166
Query: 358 LEQIDAGNYSCNVQSKV 374
+ AG Y + +
Sbjct: 167 QRKTHAGKYKVQLSNVF 183
Score = 72.0 bits (177), Expect = 1e-14
Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 33/197 (16%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P K+ DV L + LSC G P P +W++ +
Sbjct: 8 PGIRKEMKDVTTKLGE-----AAQLSCQIVGRPLPDIKWYRFG--------KELIQSRKY 54
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR-- 575
+ + G L + + ED G Y C A+N+ G + + +Q F + LK
Sbjct: 55 KMSSDGRTHTLTVMTE-EQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKY 113
Query: 576 APEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY----FSA 630
+G+ P W ++ + + + +
Sbjct: 114 YGAVGS----TLRLHV-MYIGRPVPAMTWFHGQKL--LQNSENITIENTEHYTHLVMKNV 166
Query: 631 LEQIDAGNYSCNVQSKV 647
+ AG Y + +
Sbjct: 167 QRKTHAGKYKVQLSNVF 183
Score = 62.8 bits (153), Expect = 2e-11
Identities = 30/156 (19%), Positives = 48/156 (30%), Gaps = 28/156 (17%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC---NVQSKVSD 376
P + W R + + ++ +S DG L EQ D G Y+C N +V
Sbjct: 34 RPLPDIKWYRFGKE--LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91
Query: 377 TGRNGPFFPLKVF-PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR 435
+ + L + G +RL + G PVP+ W
Sbjct: 92 SSK------LLLQATPQFHPGYPLKEK--YYGAV----GSTLRLHVMYIGRPVPAMTWFH 139
Query: 436 RGSPLPRNAYF----ENFNRILTIPNVKMR---GPY 464
L + L + NV+ + G Y
Sbjct: 140 GQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKY 175
Score = 60.1 bits (146), Expect = 2e-10
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 16/82 (19%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SDKRFTLS----GGNLIINDPR 264
+ + L G P P+ WF L + + T+ +L++ + +
Sbjct: 119 STLRLHVMYIGRPVPAMTWFHGQ-----------KLLQNSENITIENTEHYTHLVMKNVQ 167
Query: 265 QVEDRGSYHCKASNKFGSIISE 286
+ G Y + SN FG++ +
Sbjct: 168 RKTHAGKYKVQLSNVFGTVDAI 189
Score = 42.4 bits (100), Expect = 2e-04
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 757 SIQAE-PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
++ E P + D +C+ G P W+R G+
Sbjct: 2 AMSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGK 46
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 108 bits (271), Expect = 3e-25
Identities = 56/347 (16%), Positives = 93/347 (26%), Gaps = 47/347 (13%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
+ ++C PL K L G N + + V++
Sbjct: 17 VLVTCSTSCDQPMLLGIET--------------PLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 545 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF---------CDPPTN 595
C ++ + L + PE + C
Sbjct: 63 PMCYSNCP-DGQSTAKTFL--------TVYWTPERVELAPLPSWQPVGKNLTLRCQVEGG 113
Query: 596 YPGVN--YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 653
P N R ++ + V + N+SC + D
Sbjct: 114 APRANLTVVLLRGEKE--LKREPAVGEPAEVTTTVLVRRDHHGANFSCRTEL---DLRPQ 168
Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPK-TFPEAPKAGDKVRLECVAFG-YPVPSYNWTRR-- 709
G Q P P+ P + + + C G +PV
Sbjct: 169 GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG 228
Query: 710 -GSPLPRNAYFENFNRILTIPNVKVEDQGEY--ICRASNDRSALESSVTISIQAEPNFTI 766
P Y + +V ED+G C + E+ T++I + P +
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 288
Query: 767 PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGHQMTDLLLKAV 813
LT + ++T CEA VT + LG + LLLKA
Sbjct: 289 ILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ-LLLKAT 334
Score = 105 bits (263), Expect = 3e-24
Identities = 48/432 (11%), Positives = 99/432 (22%), Gaps = 75/432 (17%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILT--IPNVKMRGPYF---- 465
G V + C +PLP+ N + NV+
Sbjct: 12 PRGGSVLVTCSTSCDQPMLLGIE---TPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSN 68
Query: 466 --------------IKQPTDVVFDLSKRSIL--NDITLSCYA-GGYP--NPSYEWFKEDY 506
P V ++TL C GG P N + + +
Sbjct: 69 CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE- 127
Query: 507 VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED-RGSYHCKASNKFGS---IISESVQ 562
L + + + + ++ C+ + E+
Sbjct: 128 ----------KELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTS 177
Query: 563 LAFGFIGEFNLKRAPEIGNQNWGKA-----MFCDPPTNYPG--VNYYWARDYFPNFVEED 615
+ P++ + + + C +P + A
Sbjct: 178 APYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT 237
Query: 616 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNN 675
A E +C V + ++ FP
Sbjct: 238 YGNDSFSAKASVSVTAEDEGTQRLTCAVILGN---QSQETLQTVTIYS--------FPAP 286
Query: 676 FPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVED 735
G +V ++C A + N PR L + ++
Sbjct: 287 NVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ--------LLLKATPEDN 338
Query: 736 QGEYICRASNDRSALE----SSVTISIQAEPNFTIPLTDKHMDNQ--ADLTWTCEAFGVP 789
+ C A+ + + + + + P + + T C+A+G P
Sbjct: 339 GRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNP 398
Query: 790 DVTYSWFRNGEL 801
++G
Sbjct: 399 LPELKCLKDGTF 410
Score = 98.0 bits (243), Expect = 1e-21
Identities = 60/463 (12%), Positives = 114/463 (24%), Gaps = 96/463 (20%)
Query: 342 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN 401
K + + + + + C + + P
Sbjct: 39 KKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAK-----------TFLTVYWTPE 87
Query: 402 NFPKT-FPEAPKAGDKVRLEC-VAFGYPVPS--YNWTRRGSPLPRNAYF-ENFNRILTIP 456
P G + L C V G P + R L R E T+
Sbjct: 88 RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVL 147
Query: 457 NVK-------------------------------MRGPYFIKQPTDVVFDLSKRSILNDI 485
+ ++ P +V
Sbjct: 148 VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVD-TQG 206
Query: 486 TLSCYA-GGYPNPSYE--WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
T+ C G +P + D + V D S ++ + E
Sbjct: 207 TVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS--------AKASVSVTAEDEGT 258
Query: 543 GSYHCKASNKFGSI-ISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CD--PPTNYPG 598
C S ++V + L + C+ P
Sbjct: 259 QRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTE---VTVKCEAHPR---AK 312
Query: 599 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF-F 657
V + L A + + ++SC+ +V+ +
Sbjct: 313 VTLNGVPAQPLGPRAQ-----------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR 361
Query: 658 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA 717
L+V + P N+ T+PE + C A+G P+P + G+
Sbjct: 362 ELRVLYGPRLDERDCPGNW--TWPE----NSQQTPMCQAWGNPLPELKCLKDGTFP---- 411
Query: 718 YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
I V + +G Y+CRA + + + VT+++ +
Sbjct: 412 -----LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 81.8 bits (201), Expect = 2e-16
Identities = 56/480 (11%), Positives = 104/480 (21%), Gaps = 104/480 (21%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+ ++C PL K L G N + + V++
Sbjct: 17 VLVTCSTSCDQPMLLGIET--------------PLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 272 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF---------CDPPTN 322
C ++ + L + PE + C
Sbjct: 63 PMCYSNCP-DGQSTAKTFL--------TVYWTPERVELAPLPSWQPVGKNLTLRCQVEGG 113
Query: 323 YPGVN--YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
P N R ++ + V + N+SC + D
Sbjct: 114 APRANLTVVLLRGEKE--LKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE---LDLRPQ 168
Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPK-TFPEAPKAGDKVRLECVAFG-YPVPSYNWTRR-- 436
G Q P P+ P + + + C G +PV
Sbjct: 169 GLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALG 228
Query: 437 -GSPLPRNAYFENFNRILTIPNVKMR--GPYFI--------------------KQPTDVV 473
P Y + +V G + P V
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 288
Query: 474 FDLSKRSILND-ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLI 532
+T+ C A + + L
Sbjct: 289 ILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQ-----------PLGPRAQLLLK----- 332
Query: 533 INDPRQVEDRGSYHCKASNKFGSII---SESVQLAFGFIGEFNLKRAPEIGNQNWGKA-- 587
++ S+ C A+ + + +++ +L + + + P
Sbjct: 333 ---ATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQT 389
Query: 588 MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
C N P +D + + V V+ D G Y C +S
Sbjct: 390 PMCQAWGN-PLPELKCLKDGTFP-LPIGESVTVTRD-----------LEGTYLCRARSTQ 436
Score = 80.7 bits (198), Expect = 5e-16
Identities = 47/392 (11%), Positives = 97/392 (24%), Gaps = 86/392 (21%)
Query: 210 NDITLSCYA-GGYP--NPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 266
++TL C GG P N + + + L + + +
Sbjct: 102 KNLTLRCQVEGGAPRANLTVVLLRGE-----------KELKREPAVGEPAEVTTTVLVRR 150
Query: 267 ED-RGSYHCKASNKFGS---IISESVQLAFGFIGEFNLKRAPEIGNQNWGKA-----MFC 317
+ ++ C+ + E+ + P++ + + + C
Sbjct: 151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVC 210
Query: 318 DPPTNYPG--VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
+P + A A E +C V
Sbjct: 211 SLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGN- 269
Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTR 435
+ ++ FP G +V ++C A + N
Sbjct: 270 --QSQETLQTVTIYS--------FPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVP 319
Query: 436 RGSPLPRN-------------AYF---------ENFNRILTIPNVKMRGPYFIKQPTDVV 473
PR ++ + ++ T + GP ++
Sbjct: 320 AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGN 379
Query: 474 FDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLII 533
+ + S T C A G P P + K+ L I
Sbjct: 380 WTWPENS---QQTPMCQAWGNPLPELKCLKDG----------------------TFPLPI 414
Query: 534 NDPRQV--EDRGSYHCKASNKFGSIISESVQL 563
+ V + G+Y C+A + G ++ V +
Sbjct: 415 GESVTVTRDLEGTYLCRARSTQGE-VTREVTV 445
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 105 bits (262), Expect = 5e-25
Identities = 45/288 (15%), Positives = 78/288 (27%), Gaps = 41/288 (14%)
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 543
++L+C W + Y ++ I + G
Sbjct: 29 TLSLTCID----PDFVRWTFKTYF-------------NEMVENKKNEWIQEKA-EATRTG 70
Query: 544 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 603
+Y C SN S I V+ + L P G ++ + C P T+ Y
Sbjct: 71 TYTCSNSNGLTSSIYVFVRDP----AKLFLVGLPLFGKEDSDALVRC-PLTDPQVSQYSL 125
Query: 604 ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP 663
+ + V G + C Q + + F LKV
Sbjct: 126 IECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK--FTLKVRE 183
Query: 664 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLP-------- 714
P K GD + C + W +
Sbjct: 184 AIKA----IPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN 239
Query: 715 ---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
R + LTI + +V+D G ++C A+N + + T+ +
Sbjct: 240 SWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 77.8 bits (191), Expect = 9e-16
Identities = 37/271 (13%), Positives = 63/271 (23%), Gaps = 55/271 (20%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY----- 464
+AGD + L C+ WT + N EN + G Y
Sbjct: 25 EAGDTLSLTCIDPD----FVRWTFKTYF---NEMVENKKNEWIQEKAEATRTGTYTCSNS 77
Query: 465 ---------FIKQPTDVVFDLSKRSILN---DITLSCYAGGYPNPSYEWFKEDYVQDRLV 512
F++ P +F + D + C Y + D
Sbjct: 78 NGLTSSIYVFVRDP-AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECD------- 129
Query: 513 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFN 572
P + I + ++ R C A + S+ L
Sbjct: 130 -GKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTL----KVREA 184
Query: 573 LKRAPEIGNQNWGKA--------MFCDPPTNYPGVNYYWARDY--------FPNFVEEDK 616
+K P + + C VN W + +
Sbjct: 185 IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRG 244
Query: 617 RVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
L S+ D+G + C +
Sbjct: 245 DFNYERQETLTISSARVDDSGVFMCYANNTF 275
Score = 76.3 bits (187), Expect = 3e-15
Identities = 39/268 (14%), Positives = 66/268 (24%), Gaps = 43/268 (16%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
++L+C W + Y ++ I + G
Sbjct: 29 TLSLTCID----PDFVRWTFKTYF-------------NEMVENKKNEWIQEKA-EATRTG 70
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 330
+Y C SN S I V+ + L P G ++ + C P T+ Y
Sbjct: 71 TYTCSNSNGLTSSIYVFVRDP----AKLFLVGLPLFGKEDSDALVRC-PLTDPQVSQYSL 125
Query: 331 ARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFP 390
+ + V G + C Q + + F LKV
Sbjct: 126 IECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDK--FTLKVRE 183
Query: 391 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP-SYNWTRRGSPLP-------- 441
P K GD + C + W +
Sbjct: 184 AIKA----IPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN 239
Query: 442 ---RNAYFENFNRILTIPNVKMR--GPY 464
R + LTI + ++ G +
Sbjct: 240 SWHRGDFNYERQETLTISSARVDDSGVF 267
Score = 75.2 bits (184), Expect = 6e-15
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 10/115 (8%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
+AGD + L C+ WT + N EN + G Y C S
Sbjct: 25 EAGDTLSLTCIDPD----FVRWTFKTYF---NEMVENKKNEWIQEKAEATRTGTYTCSNS 77
Query: 745 NDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
N + SS+ + ++ + +D C YS
Sbjct: 78 NGLT---SSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECD 129
Score = 63.6 bits (154), Expect = 5e-11
Identities = 22/180 (12%), Positives = 39/180 (21%), Gaps = 28/180 (15%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
D + C Y + D P + I + ++ R
Sbjct: 108 DALVRCPLTDPQVSQYSLIECD--------GKSLPTDLTFVPNPKAGITIKNVKRAYHRL 159
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKA--------MFCDPPTN 322
C A + S+ L +K P + + C
Sbjct: 160 CVRCAAQRDGTWLHSDKFTL----KVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDV 215
Query: 323 YPGVNYYWARDY--------FPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
VN W + + L S+ D+G + C +
Sbjct: 216 STSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTF 275
Score = 50.5 bits (120), Expect = 9e-07
Identities = 22/138 (15%), Positives = 39/138 (28%), Gaps = 16/138 (11%)
Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
C A + ++ + + K P T + T+
Sbjct: 161 VRCAAQRDGTWL-----HSDKFTLKVREAIKAI--PVVSVPETSHLLKKGDT-----FTV 208
Query: 215 SCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVEDRGSY 272
C + W K + + + F L I+ R +D G +
Sbjct: 209 VCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARV-DDSGVF 267
Query: 273 HCKASNKFGSIISESVQL 290
C A+N FGS + + L
Sbjct: 268 MCYANNTFGS-ANVTTTL 284
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 102 bits (255), Expect = 8e-25
Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 16/190 (8%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ P+D++ + TL+C A G P P+ EW+K V D
Sbjct: 10 PRIVEHPSDLIVSKGE-----PATLNCKAEGRPTPTIEWYKGG----ERVETDKDDPRSH 60
Query: 250 RFTLSGGNLII----NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAP 304
R L G+L + + D G Y C A N G +S L + +F +
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSD 120
Query: 305 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG 364
+ M C PP +P W +D P +++ G L + + DAG
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSP--LDDKDERITIRGGKLMITYTRKSDAG 178
Query: 365 NYSCNVQSKV 374
Y C + V
Sbjct: 179 KYVCVGTNMV 188
Score = 102 bits (255), Expect = 8e-25
Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 16/190 (8%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P ++ P+D++ + TL+C A G P P+ EW+K V D
Sbjct: 10 PRIVEHPSDLIVSKGE-----PATLNCKAEGRPTPTIEWYKGG----ERVETDKDDPRSH 60
Query: 523 RFTLSGGNLII----NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAP 577
R L G+L + + D G Y C A N G +S L + +F +
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSD 120
Query: 578 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG 637
+ M C PP +P W +D P +++ G L + + DAG
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSP--LDDKDERITIRGGKLMITYTRKSDAG 178
Query: 638 NYSCNVQSKV 647
Y C + V
Sbjct: 179 KYVCVGTNMV 188
Score = 94.9 bits (236), Expect = 3e-22
Identities = 44/207 (21%), Positives = 70/207 (33%), Gaps = 60/207 (28%)
Query: 402 NFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI---- 452
+FP E P G+ L C A G P P+ W + G + + +R+
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 453 --LTIPN---------------------------------VKMRGPYFIKQPTDVVFDLS 477
L V + F + P+DV+ +
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVG 126
Query: 478 KRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP 536
+ + C G+P P+ W K+ + +D D+R T+ GG L+I
Sbjct: 127 E-----PAVMECQPPRGHPEPTISWKKDG--------SPLDD-KDERITIRGGKLMITYT 172
Query: 537 RQVEDRGSYHCKASNKFGSIISESVQL 563
R+ D G Y C +N G SE +L
Sbjct: 173 RK-SDAGKYVCVGTNMVGERESEVAEL 198
Score = 83.3 bits (206), Expect = 3e-18
Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 19/145 (13%)
Query: 675 NFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRIL--- 726
+FP E P G+ L C A G P P+ W + G + + +R+L
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 727 --------TIPNVKVEDQGEYICRASNDR-SALESSVTISIQAE-PNFTIPLTDKHMDNQ 776
D+G Y+C A N A+ ++ + +F +D +
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVG 126
Query: 777 ADLTWTCEA-FGVPDVTYSWFRNGE 800
C+ G P+ T SW ++G
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGS 151
Score = 79.1 bits (195), Expect = 7e-17
Identities = 38/192 (19%), Positives = 63/192 (32%), Gaps = 38/192 (19%)
Query: 596 YPGVNYYWARDYFP---NFVEEDKRVFVSYDGALYFSALEQI-----DAGNYSCNVQSK- 646
P W + + + + G+L+F + D G Y C ++
Sbjct: 36 RPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL 95
Query: 647 ---VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLEC-VAF 697
VS L+V F + P G+ +EC
Sbjct: 96 GEAVSHDAS------LEV------------AILRDDFRQNPSDVMVAVGEPAVMECQPPR 137
Query: 698 GYPVPSYNWTRRGSPLPRNAYFENF-NRILTIPNVKVEDQGEYICRASNDRSALESSV-T 755
G+P P+ +W + GSPL L I + D G+Y+C +N ES V
Sbjct: 138 GHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAE 197
Query: 756 ISIQAEPNFTIP 767
+++ P+F
Sbjct: 198 LTVLERPSFVKA 209
Score = 72.5 bits (178), Expect = 1e-14
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
F + P+DV+ + + + C G+P P+ W K+ + +D D
Sbjct: 112 DDFRQNPSDVMVAVGE-----PAVMECQPPRGHPEPTISWKKDG--------SPLDD-KD 157
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+R T+ GG L+I R+ D G Y C +N G SE +L
Sbjct: 158 ERITIRGGKLMITYTRK-SDAGKYVCVGTNMVGERESEVAEL 198
Score = 51.3 bits (123), Expect = 2e-07
Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 42/153 (27%)
Query: 323 YPGVNYYWARDYFP---NFVEEDKRVFVSYDGALYFSALEQI-----DAGNYSCNVQSK- 373
P W + + + + G+L+F + D G Y C ++
Sbjct: 36 RPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL 95
Query: 374 ---VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLEC-VAF 424
VS L+V F + P G+ +EC
Sbjct: 96 GEAVSHDAS------LEV------------AILRDDFRQNPSDVMVAVGEPAVMECQPPR 137
Query: 425 GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPN 457
G+P P+ +W + GSPL + +TI
Sbjct: 138 GHPEPTISWKKDGSPLDDK------DERITIRG 164
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 102 bits (255), Expect = 1e-24
Identities = 53/199 (26%), Positives = 79/199 (39%), Gaps = 23/199 (11%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
+ P I+ PTD+V ++ TL+C G P P+ EWFK+ V+ +
Sbjct: 7 YQSPRIIEHPTDLVVKKNE-----PATLNCKVEGKPEPTIEWFKDG----EPVST--NEK 55
Query: 247 SDKRFTLSGGNLIIN---DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
R G L ++ +D G Y C A N+ G +S L + + + +
Sbjct: 56 KSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-DFRVE 114
Query: 304 PEIGNQNWGK-AMF-CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDGALYF 355
P+ G+ A+ C PP P W +D P RV + G L
Sbjct: 115 PKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI 174
Query: 356 SALEQIDAGNYSCNVQSKV 374
S +E ID GNY C Q+ V
Sbjct: 175 SNVEPIDEGNYKCIAQNLV 193
Score = 101 bits (254), Expect = 1e-24
Identities = 53/196 (27%), Positives = 78/196 (39%), Gaps = 23/196 (11%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P I+ PTD+V ++ TL+C G P P+ EWFK+ V+ +
Sbjct: 10 PRIIEHPTDLVVKKNE-----PATLNCKVEGKPEPTIEWFKDG----EPVST--NEKKSH 58
Query: 523 RFTLSGGNLIIN---DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEI 579
R G L ++ +D G Y C A N+ G +S L + + + + P+
Sbjct: 59 RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-DFRVEPKD 117
Query: 580 GNQNWGK-AMF-CDPPTNYPGVNYYWARDYFP------NFVEEDKRVFVSYDGALYFSAL 631
G+ A+ C PP P W +D P RV + G L S +
Sbjct: 118 TRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNV 177
Query: 632 EQIDAGNYSCNVQSKV 647
E ID GNY C Q+ V
Sbjct: 178 EPIDEGNYKCIAQNLV 193
Score = 92.2 bits (229), Expect = 3e-21
Identities = 39/187 (20%), Positives = 59/187 (31%), Gaps = 44/187 (23%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI--------LTIPNVKMR---- 461
+ L C G P P+ W + G P+ N + + T+ K +
Sbjct: 24 NEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGE 83
Query: 462 ------------------------GPYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPN 496
F +P D + L C G P
Sbjct: 84 YWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGE-----TALLECGPPKGIPE 138
Query: 497 PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
P+ W K+ D L A S + + GGNL+I++ D G+Y C A N G+
Sbjct: 139 PTLIWIKDGVPLDDLKAMSFGA-SSRVRIVDGGNLLISNVEP-IDEGNYKCIAQNLVGTR 196
Query: 557 ISESVQL 563
S +L
Sbjct: 197 ESSYAKL 203
Score = 84.9 bits (210), Expect = 8e-19
Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI--------LTIPNVKVEDQGE 738
+ L C G P P+ W + G P+ N + + T+ K +D GE
Sbjct: 24 NEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGE 83
Query: 739 YICRASNDR-SALESSVTISIQA-EPNFTIPLTDKHMDNQADLTWTC-EAFGVPDVTYSW 795
Y C A N A+ ++ I +F + D + C G+P+ T W
Sbjct: 84 YWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIW 143
Query: 796 FRNGE 800
++G
Sbjct: 144 IKDGV 148
Score = 76.4 bits (188), Expect = 7e-16
Identities = 48/193 (24%), Positives = 67/193 (34%), Gaps = 35/193 (18%)
Query: 594 TNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALEQI----DAGNYSCNVQSKVS 648
P W +D P + E+ DGAL+F Q D G Y C +++V
Sbjct: 34 EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVG 93
Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECV-AFGYPVP 702
S L+ F PK G+ LEC G P P
Sbjct: 94 QA-------------VSRHASLQI-AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP 139
Query: 703 SYNWTRRGSPLP--RNAYFENFNRI-------LTIPNVKVEDQGEYICRASNDRSALESS 753
+ W + G PL + F +R+ L I NV+ D+G Y C A N ESS
Sbjct: 140 TLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Query: 754 -VTISIQAEPNFT 765
+ +Q +
Sbjct: 200 YAKLIVQVKAAAH 212
Score = 72.6 bits (178), Expect = 2e-14
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
F +P D + L C G P P+ W K+ D L A S
Sbjct: 109 DDFRVEPKDTRVAKGE-----TALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA-SS 162
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + GGNL+I++ D G+Y C A N G+ S +L
Sbjct: 163 RVRIVDGGNLLISNVEP-IDEGNYKCIAQNLVGTRESSYAKL 203
Score = 45.6 bits (108), Expect = 2e-05
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P TD + T C+ G P+ T WF++GE
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGE 48
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 100 bits (250), Expect = 4e-24
Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 15/132 (11%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN------------FNRILTIPNVK 732
+ V+L C G+ P W R + N +T +V
Sbjct: 17 PENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT 76
Query: 733 VEDQGEYICRASN--DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC-EAFGVP 789
ED G Y C S S E V + + P+ TC E G P
Sbjct: 77 REDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSP 136
Query: 790 DVTYSWFRNGEL 801
Y+WF++G +
Sbjct: 137 PSEYTWFKDGIV 148
Score = 91.9 bits (228), Expect = 3e-21
Identities = 40/181 (22%), Positives = 57/181 (31%), Gaps = 22/181 (12%)
Query: 210 NDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
N + LSC G+ +P EW + + N I + R T + + E
Sbjct: 20 NPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTR-E 78
Query: 268 DRGSYHCKASNKFGSIISE-----SVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPT 321
D G+Y C S + G+ E V + A GN+ A+ C
Sbjct: 79 DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI-GNR----AVLTCSEQD 133
Query: 322 NYPGVNYYWARD--------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSK 373
P Y W +D V G L F L D G YSC ++
Sbjct: 134 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG 193
Query: 374 V 374
Sbjct: 194 Y 194
Score = 88.9 bits (220), Expect = 3e-20
Identities = 32/194 (16%), Positives = 52/194 (26%), Gaps = 49/194 (25%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN------------FNRILTIPNVK 459
+ V+L C G+ P W R + N +T +V
Sbjct: 17 PENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT 76
Query: 460 MR--G--------------------------PYFIKQPTDVVFDLSKRSILNDITLSCYA 491
G P + N L+C
Sbjct: 77 REDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG-----NRAVLTCSE 131
Query: 492 -GGYPNPSYEWFKEDY-VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 549
G P Y WFK+ + + S + G L+ + D G Y C+A
Sbjct: 132 QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA-SDTGEYSCEA 190
Query: 550 SNKFGSIISESVQL 563
N +G+ ++ S +
Sbjct: 191 RNGYGTPMT-SNAV 203
Score = 83.9 bits (207), Expect = 2e-18
Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 40/184 (21%)
Query: 603 WARD---------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 653
W D Y + + F ++ + D G Y+C V + G +
Sbjct: 38 WKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG---GNS 94
Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLEC-VAFGYPVPSYNWT 707
+K+ P + P G++ L C G P Y W
Sbjct: 95 YGEVKVKLIVL-----------VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWF 143
Query: 708 RRGSPLPRNA-----------YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756
+ G +P N L + D GEY C A N +S +
Sbjct: 144 KDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203
Query: 757 SIQA 760
++A
Sbjct: 204 RMEA 207
Score = 63.1 bits (153), Expect = 2e-11
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 9/103 (8%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDY-VQDRLVANLIDPLS 247
P + N L+C G P Y WFK+ + + S
Sbjct: 108 PSKPTVNIPSSATIG-----NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ G L+ + D G Y C+A N +G+ ++ S +
Sbjct: 163 SYVLNPTTGELVFDPLSA-SDTGEYSCEARNGYGTPMT-SNAV 203
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 99.8 bits (249), Expect = 4e-24
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 14/136 (10%)
Query: 679 TFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILT 727
TF + + G E G+PVP +W R G + + F + LT
Sbjct: 7 TFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT 66
Query: 728 IPNVKVEDQGEYICRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADLTWTCE 784
IP V + G Y +A+N S+ + ++AE PNF L + + +
Sbjct: 67 IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVR 126
Query: 785 AFGVPDVTYSWFRNGE 800
G+P ++R+G
Sbjct: 127 VTGIPTPVVKFYRDGA 142
Score = 85.2 bits (211), Expect = 4e-19
Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 57/200 (28%)
Query: 406 TFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILT 454
TF + + G E G+PVP +W R G + + F + LT
Sbjct: 7 TFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT 66
Query: 455 IPNVKM-----------------------------RGPYFIKQPTDVVFDLSKRSILNDI 485
IP V P F+++ + +
Sbjct: 67 IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGS-----QV 121
Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVEDRG 543
L G P P +++++ I D + + G L+I + ED G
Sbjct: 122 RLQVRVTGIPTPVVKFYRDG--------AEIQSSLDFQISQEGDLYSLLIAEA-YPEDSG 172
Query: 544 SYHCKASNKFGSIISESVQL 563
+Y A+N G S + +L
Sbjct: 173 TYSVNATNSVGRATS-TAEL 191
Score = 82.1 bits (203), Expect = 5e-18
Identities = 37/172 (21%), Positives = 58/172 (33%), Gaps = 31/172 (18%)
Query: 603 WARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPF 656
W RD V +S+ L A+ + ++G YS N + + T
Sbjct: 39 WFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAE---- 94
Query: 657 FPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGS 711
L V + P F + + G +VRL+ G P P + R G+
Sbjct: 95 --LLVKAETA----------PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGA 142
Query: 712 PLPRNAYF----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
+ + F E L I ED G Y A+N S+ + +Q
Sbjct: 143 EIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 74.0 bits (182), Expect = 3e-15
Identities = 39/203 (19%), Positives = 62/203 (30%), Gaps = 44/203 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F + VV T + G+P P WF++ +I +
Sbjct: 6 PTFTQPLQSVVVLEGS-----TATFEAHISGFPVPEVSWFRDG--------QVISTSTLP 52
Query: 250 RFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFG---FIGEFN 299
+S L I + G Y KA+N G S V+ F+
Sbjct: 53 GVQISFSDGRAKLTIPAV-TKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ 111
Query: 300 LKRAPEIGNQNWGKAMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG--- 351
+ G+Q P P V + RD ++ +S +G
Sbjct: 112 SMTVRQ-GSQ----VRLQVRVTGIPT---PVV--KFYRDGAE--IQSSLDFQISQEGDLY 159
Query: 352 ALYFSALEQIDAGNYSCNVQSKV 374
+L + D+G YS N + V
Sbjct: 160 SLLIAEAYPEDSGTYSVNATNSV 182
Score = 74.0 bits (182), Expect = 3e-15
Identities = 39/203 (19%), Positives = 62/203 (30%), Gaps = 44/203 (21%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P F + VV T + G+P P WF++ +I +
Sbjct: 6 PTFTQPLQSVVVLEGS-----TATFEAHISGFPVPEVSWFRDG--------QVISTSTLP 52
Query: 523 RFTLS----GGNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFG---FIGEFN 572
+S L I + G Y KA+N G S V+ F+
Sbjct: 53 GVQISFSDGRAKLTIPAV-TKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ 111
Query: 573 LKRAPEIGNQNWGKAMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG--- 624
+ G+Q P P V + RD ++ +S +G
Sbjct: 112 SMTVRQ-GSQ----VRLQVRVTGIPT---PVV--KFYRDGAE--IQSSLDFQISQEGDLY 159
Query: 625 ALYFSALEQIDAGNYSCNVQSKV 647
+L + D+G YS N + V
Sbjct: 160 SLLIAEAYPEDSGTYSVNATNSV 182
Score = 60.9 bits (148), Expect = 8e-11
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F+++ + + L G P P +++++ I D
Sbjct: 104 PNFVQRLQSMTVRQGS-----QVRLQVRVTGIPTPVVKFYRDG--------AEIQSSLDF 150
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + G L+I + ED G+Y A+N G S + +L
Sbjct: 151 QISQEGDLYSLLIAEA-YPEDSGTYSVNATNSVGRATS-TAEL 191
Score = 56.3 bits (136), Expect = 4e-09
Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 31/145 (21%)
Query: 330 WARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPF 383
W RD V +S+ L A+ + ++G YS N + + T
Sbjct: 39 WFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAE---- 94
Query: 384 FPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGS 438
L V + P F + + G +VRL+ G P P + R G+
Sbjct: 95 --LLVKAETA----------PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGA 142
Query: 439 PLPRNAYF----ENFNRILTIPNVK 459
+ + F E L I
Sbjct: 143 EIQSSLDFQISQEGDLYSLLIAEAY 167
Score = 38.5 bits (90), Expect = 0.004
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 756 ISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
++ QA P FT PL + + T+ G P SWFR+G+
Sbjct: 1 MTTQA-PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQ 44
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 99.1 bits (247), Expect = 6e-24
Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 12/134 (8%)
Query: 679 TFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFENFNRILTIPN 730
TF E G+ + C P P+ +W + N + N L I N
Sbjct: 4 TFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 731 VKVEDQGEYICRASND--RSALESSVTISIQAEPNFTIP--LTDKHMDNQADLTWTCEAF 786
+ D+G Y C + + + + P ++P + + ++T++C A
Sbjct: 64 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 787 GVPDVTYSWFRNGE 800
G P+ SWFRNG+
Sbjct: 124 GSPEPAISWFRNGK 137
Score = 93.7 bits (233), Expect = 4e-22
Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 9/168 (5%)
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 655
P W D R + + L + + D G Y C + +
Sbjct: 29 SPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 88
Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 715
+ V + N T G+++ C A G P P+ +W R G +
Sbjct: 89 II-VIVNVPPAISMPQKSFN--ATAER----GEEMTFSCRASGSPEPAISWFRNGKLIEE 141
Query: 716 NAYF--ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE 761
N + + N LT+ N+ D G Y+CRA+N E + + +
Sbjct: 142 NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
Score = 92.2 bits (229), Expect = 1e-21
Identities = 37/196 (18%), Positives = 59/196 (30%), Gaps = 53/196 (27%)
Query: 406 TFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL---PRNAYFENFNRILTIPN 457
TF E G+ + C P P+ +W + N + N L I N
Sbjct: 4 TFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 458 VKM--RGPY----------------------------FIKQPTDVVFDLSKRSILNDITL 487
+ G Y ++ + + + ++T
Sbjct: 64 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE-----EMTF 118
Query: 488 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 547
SC A G P P+ WF+ LI+ S L + + D G Y C
Sbjct: 119 SCRASGSPEPAISWFRNG--------KLIEENEKYILKGSNTELTVRNI-INSDGGPYVC 169
Query: 548 KASNKFGSIISESVQL 563
+A+NK G + L
Sbjct: 170 RATNKAGE-DEKQAFL 184
Score = 86.8 bits (215), Expect = 1e-19
Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 20/189 (10%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + + F D + C P P+ W + + +SD
Sbjct: 3 LTFREVVSPQEFKQG-----EDAEVVCRVSSSPAPAVSWLYHN--------EEVTTISDN 49
Query: 250 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAPEIG 307
RF L+ NL I + D G Y C+ + I + + ++ +
Sbjct: 50 RFAMLANNNLQILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 108
Query: 308 NQNWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 365
G+ C + P W R+ E +K + + L + D G
Sbjct: 109 TAERGEEMTFSCR-ASGSPEPAISWFRNGKL-IEENEKYILKGSNTELTVRNIINSDGGP 166
Query: 366 YSCNVQSKV 374
Y C +K
Sbjct: 167 YVCRATNKA 175
Score = 86.8 bits (215), Expect = 1e-19
Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 20/189 (10%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
F + + F D + C P P+ W + + +SD
Sbjct: 3 LTFREVVSPQEFKQG-----EDAEVVCRVSSSPAPAVSWLYHN--------EEVTTISDN 49
Query: 523 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIG-EFNLKRAPEIG 580
RF L+ NL I + D G Y C+ + I + + ++ +
Sbjct: 50 RFAMLANNNLQILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNA 108
Query: 581 NQNWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGN 638
G+ C + P W R+ E +K + + L + D G
Sbjct: 109 TAERGEEMTFSCR-ASGSPEPAISWFRNGKL-IEENEKYILKGSNTELTVRNIINSDGGP 166
Query: 639 YSCNVQSKV 647
Y C +K
Sbjct: 167 YVCRATNKA 175
Score = 66.3 bits (162), Expect = 1e-12
Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 11/146 (7%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 382
P W D R + + L + + D G Y C + +
Sbjct: 29 SPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 88
Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 442
+ V + N T G+++ C A G P P+ +W R G +
Sbjct: 89 II-VIVNVPPAISMPQKSFN--ATAER----GEEMTFSCRASGSPEPAISWFRNGKLIEE 141
Query: 443 NAYF--ENFNRILTIPNVKMR--GPY 464
N + + N LT+ N+ GPY
Sbjct: 142 NEKYILKGSNTELTVRNIINSDGGPY 167
Score = 64.4 bits (157), Expect = 6e-12
Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 23/136 (16%)
Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
+ CE + R DI +P ++ + + + ++T
Sbjct: 72 YRCEGR--------VEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE-----EMTF 118
Query: 215 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 274
SC A G P P+ WF+ LI+ S L + + D G Y C
Sbjct: 119 SCRASGSPEPAISWFRNG--------KLIEENEKYILKGSNTELTVRNI-INSDGGPYVC 169
Query: 275 KASNKFGSIISESVQL 290
+A+NK G + L
Sbjct: 170 RATNKAGE-DEKQAFL 184
Score = 41.3 bits (97), Expect = 4e-04
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 760 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ F ++ + D C P SW + E
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 41
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 96.8 bits (241), Expect = 6e-23
Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 19/188 (10%)
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI----DAGNYSCNVQSKVSDTG 651
P + W ++ + + + G + +E + D Y C ++ V D
Sbjct: 33 DPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV 92
Query: 652 RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNW 706
L ++ K P FP + P G V + C A G P P+ W
Sbjct: 93 SAD--ATLTIYEGD-----KTPAGFPV-ITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYW 144
Query: 707 TRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICRASNDR-SALESSVTISIQAEPNF 764
+ + + + + + L I N + EDQG+Y C A N + + + ++
Sbjct: 145 IKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204
Query: 765 TIPLTDKH 772
T H
Sbjct: 205 TKHHHHHH 212
Score = 95.2 bits (237), Expect = 2e-22
Identities = 39/193 (20%), Positives = 61/193 (31%), Gaps = 56/193 (29%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLP------------------------------ 441
+ G C A G P PS W + G +
Sbjct: 19 RVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA 78
Query: 442 ------RNAYFENFNR-----ILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCY 490
N + + I P + P V ++ + ++C
Sbjct: 79 PYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH-----TVLMTCK 133
Query: 491 AGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS 550
A G P P+ W K +D S+ R++L G L I + R+ ED+G Y C A
Sbjct: 134 AIGNPTPNIYWIKNQ--------TKVDM-SNPRYSLKDGFLQIENSRE-EDQGKYECVAE 183
Query: 551 NKFGSIISESVQL 563
N G+ S++ L
Sbjct: 184 NSMGTEHSKATNL 196
Score = 91.4 bits (227), Expect = 5e-21
Identities = 41/197 (20%), Positives = 59/197 (29%), Gaps = 29/197 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P I++P + + + C A G P PS W K + +
Sbjct: 7 PEIIRKPQNQGVRVGG-----VASFYCAARGDPPPSIVWRKNG--------KKVSGTQSR 53
Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
L L I R D Y C A N G +S L + G+ P
Sbjct: 54 YTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI-YEGDKTPAGFPV 112
Query: 306 IGNQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 357
I G M C P N YW ++ V+ + DG L
Sbjct: 113 ITQGPGTRVIEVGHTVLMTC-KAIGNPTPNIYWIKNQTK--VDMSNPRYSLKDGFLQIEN 169
Query: 358 LEQIDAGNYSCNVQSKV 374
+ D G Y C ++ +
Sbjct: 170 SREEDQGKYECVAENSM 186
Score = 91.4 bits (227), Expect = 5e-21
Identities = 41/197 (20%), Positives = 59/197 (29%), Gaps = 29/197 (14%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P I++P + + + C A G P PS W K + +
Sbjct: 7 PEIIRKPQNQGVRVGG-----VASFYCAARGDPPPSIVWRKNG--------KKVSGTQSR 53
Query: 523 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 578
L L I R D Y C A N G +S L + G+ P
Sbjct: 54 YTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI-YEGDKTPAGFPV 112
Query: 579 IGNQ------NWGKA--MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA 630
I G M C P N YW ++ V+ + DG L
Sbjct: 113 ITQGPGTRVIEVGHTVLMTC-KAIGNPTPNIYWIKNQTK--VDMSNPRYSLKDGFLQIEN 169
Query: 631 LEQIDAGNYSCNVQSKV 647
+ D G Y C ++ +
Sbjct: 170 SREEDQGKYECVAENSM 186
Score = 84.1 bits (208), Expect = 1e-18
Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 15/131 (11%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY------FENFNRILTI-PNVKVEDQG 737
+ G C A G P PS W + G + IL I P D
Sbjct: 19 RVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDA 78
Query: 738 EYICRASNDR-SALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVP 789
Y C A N A+ + T++I P T + ++ + TC+A G P
Sbjct: 79 PYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP 138
Query: 790 DVTYSWFRNGE 800
W +N
Sbjct: 139 TPNIYWIKNQT 149
Score = 79.4 bits (196), Expect = 7e-17
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 180 IENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 239
E P + P V ++ + ++C A G P P+ W K
Sbjct: 101 YEGDKTPAGFPVITQGPGTRVIEVGH-----TVLMTCKAIGNPTPNIYWIKNQ------- 148
Query: 240 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+D S+ R++L G L I + R+ ED+G Y C A N G+ S++ L
Sbjct: 149 -TKVDM-SNPRYSLKDGFLQIENSRE-EDQGKYECVAENSMGTEHSKATNL 196
Score = 62.1 bits (151), Expect = 5e-11
Identities = 28/154 (18%), Positives = 51/154 (33%), Gaps = 20/154 (12%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI----DAGNYSCNVQSKVSDTG 378
P + W ++ + + + G + +E + D Y C ++ V D
Sbjct: 33 DPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV 92
Query: 379 RNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNW 433
L ++ K P FP + P G V + C A G P P+ W
Sbjct: 93 SAD--ATLTIYEGD-----KTPAGFPV-ITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYW 144
Query: 434 TRRGSPLPRNAY-FENFNRILTIPNVKMR--GPY 464
+ + + + + + L I N + G Y
Sbjct: 145 IKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKY 178
Score = 40.2 bits (94), Expect = 0.001
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 757 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ P ++ + ++ C A G P + W +NG+
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGK 45
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 96.3 bits (240), Expect = 6e-23
Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 11/126 (8%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYI 740
L C G+P P W R+G + + F+ L I +V +D Y
Sbjct: 19 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQ 78
Query: 741 CRASNDRSALESSVTISIQAE-----PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSW 795
RA+N ++ + ++ ++ P + H ++ G PD +W
Sbjct: 79 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITW 138
Query: 796 FRNGEL 801
+ +L
Sbjct: 139 QKGQDL 144
Score = 87.1 bits (216), Expect = 8e-20
Identities = 33/191 (17%), Positives = 57/191 (29%), Gaps = 57/191 (29%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNV--------- 458
L C G+P P W R+G + + F+ L I +V
Sbjct: 19 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQ 78
Query: 459 ----------------------KMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN 496
K+ P ++ V + +++ G P+
Sbjct: 79 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE-----VVSIKIPFSGKPD 133
Query: 497 PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQVEDRGSYHCKASNK 552
P W K +LID + + + + N + +D G Y A N+
Sbjct: 134 PVITWQKGQ--------DLIDN-NGHYQVIVTRSFTSLVFPNGVER-KDAGFYVVCAKNR 183
Query: 553 FGSIISESVQL 563
FG +V+L
Sbjct: 184 FGIDQK-TVEL 193
Score = 83.2 bits (206), Expect = 2e-18
Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 30/180 (16%)
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSK---VSD 649
+P W R + K + G L +++ DA Y ++ VS
Sbjct: 31 HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90
Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSY 704
T L+V E G+ V ++ G P P
Sbjct: 91 TAS------LEV--------EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 136
Query: 705 NWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
W + + N ++ +F ++ V+ +D G Y+ A N + +V + +
Sbjct: 137 TWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 72.4 bits (178), Expect = 9e-15
Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 29/197 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F ++ ++ + TL C G+P P +W+++ I K
Sbjct: 5 PHFKEELRNLNVRYQS-----NATLVCKVTGHPKPIVKWYRQG--------KEIIADGLK 51
Query: 250 -RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 302
R G LII +D Y +A+N+ GS+ V++ L+
Sbjct: 52 YRIQEFKGGYHQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110
Query: 303 APEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG----ALYFSA 357
+ P + P W + ++ + V ++ +
Sbjct: 111 MGAVHALRGEVVSIKI-PFSGKPDPVITWQKGQDL--IDNNGHYQVIVTRSFTSLVFPNG 167
Query: 358 LEQIDAGNYSCNVQSKV 374
+E+ DAG Y +++
Sbjct: 168 VERKDAGFYVVCAKNRF 184
Score = 72.4 bits (178), Expect = 9e-15
Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 29/197 (14%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P+F ++ ++ + TL C G+P P +W+++ I K
Sbjct: 5 PHFKEELRNLNVRYQS-----NATLVCKVTGHPKPIVKWYRQG--------KEIIADGLK 51
Query: 523 -RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 575
R G LII +D Y +A+N+ GS+ V++ L+
Sbjct: 52 YRIQEFKGGYHQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110
Query: 576 APEIGNQNWGKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG----ALYFSA 630
+ P + P W + ++ + V ++ +
Sbjct: 111 MGAVHALRGEVVSIKI-PFSGKPDPVITWQKGQDL--IDNNGHYQVIVTRSFTSLVFPNG 167
Query: 631 LEQIDAGNYSCNVQSKV 647
+E+ DAG Y +++
Sbjct: 168 VERKDAGFYVVCAKNRF 184
Score = 63.2 bits (154), Expect = 2e-11
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 20/105 (19%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ V + +++ G P+P W K +LID +
Sbjct: 105 PKTLEGMGAVHALRGE-----VVSIKIPFSGKPDPVITWQKGQ--------DLIDN-NGH 150
Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + + N + +D G Y A N+FG +V+L
Sbjct: 151 YQVIVTRSFTSLVFPNGVER-KDAGFYVVCAKNRFGIDQK-TVEL 193
Score = 59.0 bits (143), Expect = 4e-10
Identities = 26/160 (16%), Positives = 46/160 (28%), Gaps = 32/160 (20%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSK---VSD 376
+P W R + K + G L +++ DA Y ++ VS
Sbjct: 31 HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSG 90
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSY 431
T L+V E G+ V ++ G P P
Sbjct: 91 TAS------LEV--------EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 136
Query: 432 NWTRRGSPLPRNAYF-----ENFNRILTIPNVKM--RGPY 464
W + + N ++ +F ++ V+ G Y
Sbjct: 137 TWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176
Score = 46.6 bits (111), Expect = 7e-06
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P+F L + ++ Q++ T C+ G P W+R G+
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGK 43
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 96.9 bits (241), Expect = 8e-23
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 10/125 (8%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYI 740
A + V+ C A G P+P+ W + G + N + L + +V D+G Y
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 741 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTYSW 795
C N+ ++ + + + L N D+ + C+ + W
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152
Query: 796 FRNGE 800
++ E
Sbjct: 153 IKHVE 157
Score = 83.0 bits (205), Expect = 5e-18
Identities = 32/192 (16%), Positives = 53/192 (27%), Gaps = 48/192 (25%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKM--RGPY- 464
A + V+ C A G P+P+ W + G + N + L + +V +G Y
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 465 ----------------------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPN 496
P + + D+ C
Sbjct: 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGG-----DVEFVCKVYSDAQ 147
Query: 497 PSYEWFKEDYVQDRLVANLIDPL-----SDKRFTLSGGNLIINDPRQVEDRGSYHCKASN 551
P +W K P + + L + + + D G Y CK SN
Sbjct: 148 PHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE-ADAGEYICKVSN 206
Query: 552 KFGSIISESVQL 563
G ++S L
Sbjct: 207 YIGQ-ANQSAWL 217
Score = 82.3 bits (203), Expect = 1e-17
Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 31/166 (18%)
Query: 617 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF 676
+ +L ++ D GNY+C V+++ G + L V ++ +
Sbjct: 69 YKVRNQHWSLIMESVVPSDKGNYTCVVENEY---GSINHTYHLDV--------VERSRHR 117
Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------ 725
P P G V C + P W + + +
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 726 ---------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
L + NV D GEYIC+ SN S +++ +
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQ 223
Score = 71.1 bits (174), Expect = 5e-14
Identities = 39/212 (18%), Positives = 65/212 (30%), Gaps = 46/212 (21%)
Query: 190 PYFIK----QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 245
PY+ + + N + C AGG P P+ W K
Sbjct: 16 PYWTNTEKMEKRLHAVPAA-----NTVKFRCPAGGNPMPTMRWLKNG--------KEFKQ 62
Query: 246 ---LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 302
+ + +LI+ D+G+Y C N++GS I+ + L + E + R
Sbjct: 63 EHRIGGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGS-INHTYHLD---VVERSRHR 117
Query: 303 APEIGN--QNW-----GKAMF-CDPPTNYPGVNYYWARDYFPNF------------VEED 342
N G F C + + W + N V +
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCK-VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKH 176
Query: 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
+ S L + + DAG Y C V + +
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYI 208
Score = 71.1 bits (174), Expect = 5e-14
Identities = 39/212 (18%), Positives = 65/212 (30%), Gaps = 46/212 (21%)
Query: 463 PYFIK----QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 518
PY+ + + N + C AGG P P+ W K
Sbjct: 16 PYWTNTEKMEKRLHAVPAA-----NTVKFRCPAGGNPMPTMRWLKNG--------KEFKQ 62
Query: 519 ---LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKR 575
+ + +LI+ D+G+Y C N++GS I+ + L + E + R
Sbjct: 63 EHRIGGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGS-INHTYHLD---VVERSRHR 117
Query: 576 APEIGN--QNW-----GKAMF-CDPPTNYPGVNYYWARDYFPNF------------VEED 615
N G F C + + W + N V +
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCK-VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKH 176
Query: 616 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
+ S L + + DAG Y C V + +
Sbjct: 177 SGINSSNAEVLALFNVTEADAGEYICKVSNYI 208
Score = 56.4 bits (136), Expect = 6e-09
Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 14/116 (12%)
Query: 180 IENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 239
+E P P + + D+ C P +W K
Sbjct: 111 VERSRHRP--ILQAGLPANASTVVGG-----DVEFVCKVYSDAQPHIQWIKHVEKNGSKY 163
Query: 240 ANLIDPL-----SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
P + + L + + + D G Y CK SN G ++S L
Sbjct: 164 GPDGLPYLKVLKHSGINSSNAEVLALFNVTE-ADAGEYICKVSNYIGQ-ANQSAWL 217
Score = 54.1 bits (130), Expect = 4e-08
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 16/126 (12%)
Query: 344 RVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF 403
+ +L ++ D GNY+C V+++ G + L V ++ +
Sbjct: 69 YKVRNQHWSLIMESVVPSDKGNYTCVVENEY---GSINHTYHLDV--------VERSRHR 117
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 458
P P G V C + P W + + + + +
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 459 KMRGPY 464
+
Sbjct: 178 GINSSN 183
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 97.5 bits (243), Expect = 2e-22
Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 11/128 (8%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGE 738
+ L C G+P P W R+G + + F+ L I +V +D
Sbjct: 17 RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATV 76
Query: 739 YICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTY 793
Y RA+N ++ + ++ ++ +P T + M ++ G PD
Sbjct: 77 YQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 136
Query: 794 SWFRNGEL 801
+W + +L
Sbjct: 137 TWQKGQDL 144
Score = 79.4 bits (196), Expect = 3e-16
Identities = 32/187 (17%), Positives = 59/187 (31%), Gaps = 45/187 (24%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKM--RGP 463
+ L C G+P P W R+G + + F+ L I +V
Sbjct: 17 RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATV 76
Query: 464 Y-----------------FIKQPTDVVFDLSKRSILN-------DITLSCYAGGYPNPSY 499
Y ++ P + + + +++ G P+P
Sbjct: 77 YQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI 136
Query: 500 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSI 556
W K +LID + ++ + N + +D G Y A N+FG
Sbjct: 137 TWQKGQ--------DLIDNNGHYQVIVTRSFTSLVFPNGV-ERKDAGFYVVCAKNRFGI- 186
Query: 557 ISESVQL 563
++V+L
Sbjct: 187 DQKTVEL 193
Score = 75.6 bits (186), Expect = 6e-15
Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 22/207 (10%)
Query: 588 MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSC--- 641
+ C T +P W R + K + G L +++ DA Y
Sbjct: 24 LVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82
Query: 642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPV 701
N VS T L+V + K G+ V ++ G P
Sbjct: 83 NQGGSVSGTAS------LEVEVPAKIHLPKTLEGMGAVHA---LRGEVVSIKIPFSGKPD 133
Query: 702 PSYNWTRRGSPLPRNAYFE-----NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756
P W + + N +++ +F ++ V+ +D G Y+ A N + +V +
Sbjct: 134 PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 757 SIQAEPNF-TIPLTDKHMDNQADLTWT 782
+ P+ + +LTWT
Sbjct: 194 DVADVPDPPRGVKVSDVSRDSVNLTWT 220
Score = 66.7 bits (163), Expect = 5e-12
Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 27/196 (13%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F ++ ++ + TL C G+P P +W+++ I K
Sbjct: 5 PHFKEELRNLNVRYQS-----NATLVCKVTGHPKPIVKWYRQG--------KEIIADGLK 51
Query: 250 -RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 302
R G LII +D Y +A+N+ GS+ V++ L+
Sbjct: 52 YRIQEFKGGYHQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG 110
Query: 303 APEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA----LYFSAL 358
+ P + P W + ++ + V + ++ + +
Sbjct: 111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDL--IDNNGHYQVIVTRSFTSLVFPNGV 168
Query: 359 EQIDAGNYSCNVQSKV 374
E+ DAG Y +++
Sbjct: 169 ERKDAGFYVVCAKNRF 184
Score = 57.8 bits (140), Expect = 3e-09
Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 179 DIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRL 238
++E P KI P ++ V +++ G P+P W K
Sbjct: 95 EVEVPAKI-HLPKTLEGMGAVHALRG-----EVVSIKIPFSGKPDPVITWQKGQ------ 142
Query: 239 VANLIDPLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+LID + ++ + N + +D G Y A N+FG ++V+L
Sbjct: 143 --DLIDNNGHYQVIVTRSFTSLVFPNGV-ERKDAGFYVVCAKNRFGI-DQKTVEL 193
Score = 40.9 bits (96), Expect = 0.001
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P+F L + ++ Q++ T C+ G P W+R G+
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGK 43
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 94.5 bits (235), Expect = 2e-22
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 9/124 (7%)
Query: 686 AGDKVRLECVAFGYP-VPSYNWTRR-GSPLPRN------AYFENFNRILTIPNVKVEDQG 737
G+ C G +W G L N + ++ + LTI N ++D G
Sbjct: 16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75
Query: 738 EYICRASNDR-SALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
Y C + + + E++V + I + F T + D C+ T W
Sbjct: 76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK 135
Query: 797 RNGE 800
G
Sbjct: 136 HKGR 139
Score = 87.6 bits (217), Expect = 6e-20
Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 17/177 (9%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY----DGALYFSALEQIDAGNYSCNVQS 645
C + + W +R+ V + L DAG Y C V +
Sbjct: 24 CQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA 83
Query: 646 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN 705
+ +K+F F+ P + F E G+ + C P+
Sbjct: 84 EDGTQSEA--TVNVKIFQKLMFKNA--PTP--QEFKE----GEDAVIVCDVVSSLPPTII 133
Query: 706 WTRRGSPLPRNA---YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
W +G + + N L I +K D+G Y C + I +
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 85.6 bits (212), Expect = 2e-19
Identities = 32/183 (17%), Positives = 48/183 (26%), Gaps = 50/183 (27%)
Query: 413 AGDKVRLECVAFGYP-VPSYNWTRR-GSPLPRN------AYFENFNRILTIPNVKM--RG 462
G+ C G +W G L N + ++ + LTI N + G
Sbjct: 16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAG 75
Query: 463 -------------------------PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP 497
F PT F + D + C P
Sbjct: 76 IYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE-----DAVIVCDVVSSLPP 130
Query: 498 SYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
+ W + + D RF LS L I + D G+Y C+
Sbjct: 131 TIIWKHKG--------RDVILKKDVRFIVLSNNYLQIRGI-KKTDEGTYRCEGRILARGE 181
Query: 557 ISE 559
I+
Sbjct: 182 INF 184
Score = 84.5 bits (209), Expect = 8e-19
Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 37/202 (18%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPL 246
R P+ + + C G + WF + + P
Sbjct: 1 RVLQVDIVPSQGEISVGE-----SKFFLCQVAGDAKDKDISWFSPN-------GEKLSP- 47
Query: 247 SDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 301
+ +R ++ L I + ++D G Y C + + G+ +V + +
Sbjct: 48 NQQRISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNV--------KIF 98
Query: 302 RAPEIGNQ------NWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 353
+ N G+ A+ CD + W +++D R V + L
Sbjct: 99 QKLMFKNAPTPQEFKEGEDAVIVCD-VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 354 YFSALEQIDAGNYSCNVQSKVS 375
+++ D G Y C +
Sbjct: 158 QIRGIKKTDEGTYRCEGRILAR 179
Score = 84.5 bits (209), Expect = 8e-19
Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 37/202 (18%)
Query: 461 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLIDPL 519
R P+ + + C G + WF + + P
Sbjct: 1 RVLQVDIVPSQGEISVGE-----SKFFLCQVAGDAKDKDISWFSPN-------GEKLSP- 47
Query: 520 SDKRFTL-----SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK 574
+ +R ++ L I + ++D G Y C + + G+ +V + +
Sbjct: 48 NQQRISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNV--------KIF 98
Query: 575 RAPEIGNQ------NWGK-AMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGAL 626
+ N G+ A+ CD + W +++D R V + L
Sbjct: 99 QKLMFKNAPTPQEFKEGEDAVIVCD-VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 157
Query: 627 YFSALEQIDAGNYSCNVQSKVS 648
+++ D G Y C +
Sbjct: 158 QIRGIKKTDEGTYRCEGRILAR 179
Score = 67.9 bits (166), Expect = 3e-13
Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 15/98 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F PT F + D + C P+ W + + D
Sbjct: 101 LMFKNAPTPQEFKEGE-----DAVIVCDVVSSLPPTIIWKHKG--------RDVILKKDV 147
Query: 250 RFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
RF LS L I + D G+Y C+ I+
Sbjct: 148 RFIVLSNNYLQIRGI-KKTDEGTYRCEGRILARGEINF 184
Score = 62.1 bits (151), Expect = 4e-11
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 17/150 (11%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSY----DGALYFSALEQIDAGNYSCNVQS 372
C + + W +R+ V + L DAG Y C V +
Sbjct: 24 CQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA 83
Query: 373 KVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYN 432
+ +K+F F+ P + F E G+ + C P+
Sbjct: 84 EDGTQSEA--TVNVKIFQKLMFKNA--PTP--QEFKE----GEDAVIVCDVVSSLPPTII 133
Query: 433 WTRRGSPLPRNA---YFENFNRILTIPNVK 459
W +G + + N L I +K
Sbjct: 134 WKHKGRDVILKKDVRFIVLSNNYLQIRGIK 163
Score = 32.9 bits (75), Expect = 0.28
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVP-DVTYSWFR-NGEL 801
I + + + C+ G D SWF NGE
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEK 44
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 96.2 bits (239), Expect = 2e-22
Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 10/129 (7%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYI 740
A + VR C A G P PS +W + G + L + +V D+G Y
Sbjct: 29 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88
Query: 741 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTYSW 795
C N ++ + T+ + L NQ +D+ + C+ + W
Sbjct: 89 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148
Query: 796 FRNGELGHQ 804
++ E+
Sbjct: 149 LKHVEVNGS 157
Score = 84.2 bits (208), Expect = 3e-18
Identities = 33/193 (17%), Positives = 51/193 (26%), Gaps = 49/193 (25%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKM--RGPY- 464
A + VR C A G P PS +W + G + L + +V RG Y
Sbjct: 29 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88
Query: 465 ----------------------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPN 496
P + L +D+ C
Sbjct: 89 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG-----SDVEFHCKVYSDAQ 143
Query: 497 PSYEWFKED------YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKAS 550
P +W K D + + L + + D G Y C+A+
Sbjct: 144 PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANV-SERDGGEYLCRAT 202
Query: 551 NKFGSIISESVQL 563
N G ++ L
Sbjct: 203 NFIGV-AEKAFWL 214
Score = 81.9 bits (202), Expect = 1e-17
Identities = 35/197 (17%), Positives = 56/197 (28%), Gaps = 34/197 (17%)
Query: 596 YPGVNYYWARDYFPNFVEE--DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 653
P + W ++ E +L ++ D GNY+C V++K G
Sbjct: 42 NPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKF---GSI 98
Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTR 708
+ L V + P P G V C + P W +
Sbjct: 99 RQTYTLDVLER--------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 150
Query: 709 RGSPLPRNAYFENFNRI----------------LTIPNVKVEDQGEYICRASNDRSALES 752
+ + L + NV D GEY+CRA+N E
Sbjct: 151 HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEK 210
Query: 753 SVTISIQAEPNFTIPLT 769
+ +S+ L
Sbjct: 211 AFWLSVHGPRAAEEELV 227
Score = 72.3 bits (177), Expect = 3e-14
Identities = 40/219 (18%), Positives = 66/219 (30%), Gaps = 40/219 (18%)
Query: 181 ENPDKIPRG-PYFIK----QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQ 235
+ + G PY+ + + + N + C A G P PS W K
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAA-----NTVRFRCPAAGNPTPSISWLK----- 51
Query: 236 DRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI 295
+ + + +L++ DRG+Y C NKFGS I ++ L +
Sbjct: 52 NGREFRGEHRIGGIKLRHQQWSLVMESVVP-SDRGNYTCVVENKFGS-IRQTYTLD---V 106
Query: 296 GEFNLKRAPEIG----NQ--NWGK--AMFC----DPP--------TNYPGVNYYWARDYF 335
E + R NQ G C D G +
Sbjct: 107 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 166
Query: 336 PNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
++ V D L + + + D G Y C + +
Sbjct: 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI 205
Score = 71.5 bits (175), Expect = 6e-14
Identities = 39/209 (18%), Positives = 63/209 (30%), Gaps = 39/209 (18%)
Query: 463 PYFIK----QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 518
PY+ + + + N + C A G P PS W K +
Sbjct: 12 PYWTRPERMDKKLLAVPAA-----NTVRFRCPAAGNPTPSISWLK-----NGREFRGEHR 61
Query: 519 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 578
+ + +L++ DRG+Y C NKFGS I ++ L + E + R
Sbjct: 62 IGGIKLRHQQWSLVMESVVP-SDRGNYTCVVENKFGS-IRQTYTLD---VLERSPHRPIL 116
Query: 579 IG----NQ--NWGK--AMFC----DPP--------TNYPGVNYYWARDYFPNFVEEDKRV 618
NQ G C D G + ++
Sbjct: 117 QAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISE 176
Query: 619 FVSYDGALYFSALEQIDAGNYSCNVQSKV 647
V D L + + + D G Y C + +
Sbjct: 177 SVEADVRLRLANVSERDGGEYLCRATNFI 205
Score = 57.6 bits (139), Expect = 2e-09
Identities = 17/107 (15%), Positives = 29/107 (27%), Gaps = 13/107 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED------YVQDRLVANLI 243
P + L +D+ C P +W K D +
Sbjct: 115 ILQAGLPANQTAVLG-----SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 169
Query: 244 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ L + + D G Y C+A+N G ++ L
Sbjct: 170 LKSWISESVEADVRLRLANV-SERDGGEYLCRATNFIGV-AEKAFWL 214
Score = 51.9 bits (124), Expect = 2e-07
Identities = 24/160 (15%), Positives = 40/160 (25%), Gaps = 34/160 (21%)
Query: 323 YPGVNYYWARDYFPNFVEE--DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
P + W ++ E +L ++ D GNY+C V++K G
Sbjct: 42 NPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKF---GSI 98
Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTR 435
+ L V + P P G V C + P W +
Sbjct: 99 RQTYTLDVLER--------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK 150
Query: 436 RGSPLPRNAYFENFNRI----------------LTIPNVK 459
+ + L + NV
Sbjct: 151 HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVS 190
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 96.7 bits (240), Expect = 3e-22
Identities = 43/297 (14%), Positives = 79/297 (26%), Gaps = 59/297 (19%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
L+C + W + ++ + L + + D G
Sbjct: 18 FVLTCSG----SAPVVWERMS-------QEPPQEMAKAQDGTFSSVLTLTNL-TGLDTGE 65
Query: 545 YHCKASNKFGSIISESVQL-------AFGFIGEFNLKRAPEIGNQNWGKAMF--CDPPTN 595
Y C ++ G E +L GF+ + C
Sbjct: 66 YFCTHNDSRGLETDERKRLYIFVPDPTVGFL---PNDAEELFIFLTEITEITIPCRVTD- 121
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 655
P + + D + V YD FS + + +Y C
Sbjct: 122 -PQLVVTLHEK------KGDVALPVPYDHQRGFSGIF--EDRSYICKTTIGD-------- 164
Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDKVRLECVAFGYPVPSYNWTRRGS 711
+ + + + A + G+ + L C+ G V ++ WT
Sbjct: 165 ----REVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK 220
Query: 712 PLPRNAYFEN---------FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
R IL IP+ ++ED G Y C + + + I+I
Sbjct: 221 ESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277
Score = 86.3 bits (213), Expect = 1e-18
Identities = 26/201 (12%), Positives = 54/201 (26%), Gaps = 13/201 (6%)
Query: 603 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 662
W R E K ++ L + L +D G Y C + V
Sbjct: 30 WERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVP 89
Query: 663 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF 722
+ F N + ++ + C P + + +
Sbjct: 90 D----PTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALP-VPYDH 143
Query: 723 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAE---PNFTIPLTDKHMDNQADL 779
R + + YIC+ + ++S + + N ++ + ++
Sbjct: 144 QRGFSGIF----EDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENI 199
Query: 780 TWTCEAFGVPDVTYSWFRNGE 800
T C G V + W +
Sbjct: 200 TLMCIVIGNEVVNFEWTYPRK 220
Score = 85.1 bits (210), Expect = 2e-18
Identities = 39/252 (15%), Positives = 69/252 (27%), Gaps = 32/252 (12%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVF 389
W R E K ++ L + L +D G Y C + V
Sbjct: 30 WERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVP 89
Query: 390 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF 449
+ F N + ++ + C P + + +
Sbjct: 90 D----PTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALP-VPYDH 143
Query: 450 NRILTIPNVKMRGPY------------------FIKQPTDVVFDLSKRSIL----NDITL 487
R + Y + Q + + ++ + +ITL
Sbjct: 144 QRGFSGIFE--DRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITL 201
Query: 488 SCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC 547
C G ++EW RLV + D L D + + L I ++ED G+Y C
Sbjct: 202 MCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR-SILHIPSA-ELEDSGTYTC 259
Query: 548 KASNKFGSIISE 559
+ E
Sbjct: 260 NVTESVNDHQDE 271
Score = 70.1 bits (171), Expect = 3e-13
Identities = 42/278 (15%), Positives = 72/278 (25%), Gaps = 61/278 (21%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN---FNRILTIPNVKMR--GPY-- 464
L C W R P+ F+ +LT+ N+ G Y
Sbjct: 13 NVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFC 68
Query: 465 ------------------FIKQPTDVVFDLSKRSIL------NDITLSCYAGGYPNPSYE 500
F+ PT + +IT+ C P
Sbjct: 69 THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVT 127
Query: 501 WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES 560
++ D + G I + SY CK + + S++
Sbjct: 128 LHEKK----------GDVALPVPYDHQRGFSGIF------EDRSYICKTTIGDREVDSDA 171
Query: 561 VQLAFGFIGEFNLKRAPEIGNQNWGKAMF--CDPPTNYPGVNYYWARD------YFPNFV 612
+ + N+ G+ + C VN+ W
Sbjct: 172 YYVYRLQVSSINVSVNAVQTVVRQGENITLMCI-VIGNEVVNFEWTYPRKESGRLVEPVT 230
Query: 613 EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 650
+ + L+ + E D+G Y+CNV V+D
Sbjct: 231 DFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDH 268
Score = 68.2 bits (166), Expect = 1e-12
Identities = 38/277 (13%), Positives = 70/277 (25%), Gaps = 61/277 (22%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
L+C + W + ++ + L + + D G
Sbjct: 18 FVLTCSG----SAPVVWERMS-------QEPPQEMAKAQDGTFSSVLTLTNL-TGLDTGE 65
Query: 272 YHCKASNKFGSIISESVQL-------AFGFIGEFNLKRAPEIGNQNWGKAMF--CDPPTN 322
Y C ++ G E +L GF+ + C
Sbjct: 66 YFCTHNDSRGLETDERKRLYIFVPDPTVGFL---PNDAEELFIFLTEITEITIPCRVTD- 121
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 382
P + + D + V YD FS + + +Y C
Sbjct: 122 -PQLVVTLHEK------KGDVALPVPYDHQRGFSGIF--EDRSYICKTTIGD-------- 164
Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAP----KAGDKVRLECVAFGYPVPSYNWTRRGS 438
+ + + + A + G+ + L C+ G V ++ WT
Sbjct: 165 ----REVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK 220
Query: 439 PLPRNAYFEN---------FNRILTIPNVKMR--GPY 464
R IL IP+ ++ G Y
Sbjct: 221 ESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTY 257
Score = 66.6 bits (162), Expect = 5e-12
Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 15/125 (12%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN---FNRILTIPNVKVEDQGEYIC 741
L C W R P+ F+ +LT+ N+ D GEY C
Sbjct: 13 NVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFC 68
Query: 742 RASND---RSALESSVTISIQAEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYS 794
++ + + I + +P + + ++T C P + +
Sbjct: 69 THNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV-TDPQLVVT 127
Query: 795 WFRNG 799
Sbjct: 128 LHEKK 132
Score = 58.2 bits (140), Expect = 3e-09
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+ITL C G ++EW RLV + D L D + + L I ++ED G
Sbjct: 198 NITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR-SILHIPSA-ELEDSG 255
Query: 271 SYHCKASNKFGSIISE 286
+Y C + E
Sbjct: 256 TYTCNVTESVNDHQDE 271
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 98.3 bits (245), Expect = 4e-22
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 11/128 (8%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RI----------LTIPNVKV 733
+V L C A G P+P W R ++ + RI L I +VK+
Sbjct: 13 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72
Query: 734 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
D G Y C A++ + S+ + I+ P F T + + +C+ P +
Sbjct: 73 SDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASI 132
Query: 794 SWFRNGEL 801
W R+ +
Sbjct: 133 HWRRDKLV 140
Score = 76.4 bits (188), Expect = 7e-15
Identities = 36/193 (18%), Positives = 53/193 (27%), Gaps = 56/193 (29%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RI----------LTIPNVKM 460
+V L C A G P+P W R ++ + RI L I +VK+
Sbjct: 13 YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKL 72
Query: 461 --------------------------RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY 494
P FI T N I +SC
Sbjct: 73 SDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEG-----NPINISCDVKSN 127
Query: 495 PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG----GNLIINDPRQVEDRGSYHCKAS 550
P S W ++ ++ + L I D G Y+C A+
Sbjct: 128 PPASIHWRRDK--------LVLPAKNTTNLKTYSTGRKMILEIAPTSD-NDFGRYNCTAT 178
Query: 551 NKFGSIISESVQL 563
N G+ + L
Sbjct: 179 NHIGT-RFQEYIL 190
Score = 74.8 bits (184), Expect = 2e-14
Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 37/187 (19%)
Query: 614 EDKRVFVSYD---GALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNF 667
D R+ V +L+ ++ D+G Y C + + L +
Sbjct: 50 LDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY------LDI------ 97
Query: 668 QQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--- 719
+ F G+ + + C P S +W R LP
Sbjct: 98 -------EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLK 150
Query: 720 ---ENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF-TIPLTDKHMDN 775
IL I D G Y C A+N +++ P+ +
Sbjct: 151 TYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQT 210
Query: 776 QADLTWT 782
A +++
Sbjct: 211 TAKVSFN 217
Score = 72.1 bits (177), Expect = 2e-13
Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 24/192 (12%)
Query: 193 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT 252
I Q + + +TL C A G P P W + D D D R
Sbjct: 4 IIQLKNETTYENG-----QVTLVCDAEGEPIPEITWKRAV---DGFTFTEGDKSLDGRIE 55
Query: 253 LSG----GNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPE 305
+ G +L I D ++ D G Y C+A+++ G ++ A FI + + E
Sbjct: 56 VKGQHGSSSLHIKDV-KLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWE 114
Query: 306 IGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQID 362
N + C + P + +W RD + + G L + D
Sbjct: 115 GNPIN----ISC-DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDND 169
Query: 363 AGNYSCNVQSKV 374
G Y+C + +
Sbjct: 170 FGRYNCTATNHI 181
Score = 58.3 bits (141), Expect = 5e-09
Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 19/105 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P FI T N I +SC P S W ++ ++ +
Sbjct: 101 PKFISNQTIYYSWEG-----NPINISCDVKSNPPASIHWRRDK--------LVLPAKNTT 147
Query: 250 RFTLSG----GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
L I D G Y+C A+N G+ + L
Sbjct: 148 NLKTYSTGRKMILEIAPTSD-NDFGRYNCTATNHIGT-RFQEYIL 190
Score = 49.4 bits (118), Expect = 3e-06
Identities = 23/143 (16%), Positives = 37/143 (25%), Gaps = 38/143 (26%)
Query: 341 EDKRVFVSYD---GALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNF 394
D R+ V +L+ ++ D+G Y C + + L +
Sbjct: 50 LDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMY------LDI------ 97
Query: 395 QQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--- 446
+ F G+ + + C P S +W R LP
Sbjct: 98 -------EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLK 150
Query: 447 ---ENFNRILTIPNVKMR--GPY 464
IL I G Y
Sbjct: 151 TYSTGRKMILEIAPTSDNDFGRY 173
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 94.3 bits (234), Expect = 4e-22
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF------------NRILTIPNVK 732
+ ++L C G+ P W + + + +T +V
Sbjct: 14 PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73
Query: 733 VEDQGEYICRASN--DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVP 789
+D GEY C S ++ E S+ +++ P+ + TC G P
Sbjct: 74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP 133
Query: 790 DVTYSWFRNGE 800
YSWF++G
Sbjct: 134 PSEYSWFKDGI 144
Score = 88.9 bits (220), Expect = 3e-20
Identities = 37/199 (18%), Positives = 56/199 (28%), Gaps = 22/199 (11%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLS 247
+DV ++ I L+C G+ +P EW + I
Sbjct: 2 GSVYTAQSDVQVPENE-----SIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPY 56
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLAFGFIGEFNLKRAPEI 306
R T S + + + +D G Y C S + G E S+ L
Sbjct: 57 ADRVTFSSSGITFSSVTR-KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSK--PTISVP 113
Query: 307 GNQNWGK-AMF-CDPPTNYPGVNYYWARD---------YFPNFVEEDKRVFVSYDGALYF 355
+ G A+ C P Y W +D G L F
Sbjct: 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIF 173
Query: 356 SALEQIDAGNYSCNVQSKV 374
+ D+G Y C Q+
Sbjct: 174 DPVTAFDSGEYYCQAQNGY 192
Score = 88.9 bits (220), Expect = 3e-20
Identities = 37/199 (18%), Positives = 56/199 (28%), Gaps = 22/199 (11%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLS 520
+DV ++ I L+C G+ +P EW + I
Sbjct: 2 GSVYTAQSDVQVPENE-----SIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPY 56
Query: 521 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLAFGFIGEFNLKRAPEI 579
R T S + + + +D G Y C S + G E S+ L
Sbjct: 57 ADRVTFSSSGITFSSVTR-KDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSK--PTISVP 113
Query: 580 GNQNWGK-AMF-CDPPTNYPGVNYYWARD---------YFPNFVEEDKRVFVSYDGALYF 628
+ G A+ C P Y W +D G L F
Sbjct: 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIF 173
Query: 629 SALEQIDAGNYSCNVQSKV 647
+ D+G Y C Q+
Sbjct: 174 DPVTAFDSGEYYCQAQNGY 192
Score = 81.2 bits (200), Expect = 1e-17
Identities = 31/174 (17%), Positives = 47/174 (27%), Gaps = 32/174 (18%)
Query: 607 YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSN 666
Y + FS++ + D G Y+C V + L V
Sbjct: 48 YNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH-LTV----- 101
Query: 667 FQQLKFPNNFPKTFPEAPK-----AGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYFE 720
P + P G++ L C G P Y+W + G + +
Sbjct: 102 --------LVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKK 153
Query: 721 NFNRI------------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
+ L V D GEY C+A N S + A
Sbjct: 154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 81.2 bits (200), Expect = 1e-17
Identities = 30/188 (15%), Positives = 51/188 (27%), Gaps = 49/188 (26%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF------------NRILTIPNVK 459
+ ++L C G+ P W + + + +T +V
Sbjct: 14 PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVT 73
Query: 460 MR----------------------------GPYFIKQPTDVVFDLSKRSILNDITLSCYA 491
+ P + N L+C
Sbjct: 74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG-----NRAVLTCSE 128
Query: 492 G-GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS--GGNLIINDPRQVEDRGSYHCK 548
G P Y WFK+ A + FT+ G+LI + D G Y+C+
Sbjct: 129 HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV-TAFDSGEYYCQ 187
Query: 549 ASNKFGSI 556
A N +G+
Sbjct: 188 AQNGYGTA 195
Score = 59.6 bits (144), Expect = 3e-10
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAG-GYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P + N L+C G P Y WFK+ A +
Sbjct: 105 PSKPTISVPSSVTIG-----NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159
Query: 249 KRFTLS--GGNLIINDPRQVEDRGSYHCKASNKFGSI 283
FT+ G+LI + D G Y+C+A N +G+
Sbjct: 160 SSFTIDPKSGDLIFDPV-TAFDSGEYYCQAQNGYGTA 195
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 94.1 bits (234), Expect = 5e-22
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 13/127 (10%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKV-EDQGEYI 740
G C A G P P W ++G + + + +L I ++ D+ Y
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE 80
Query: 741 CRASNDRSALESSVTISIQAE-------PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
C ASN+ + S +++ E P + K ++ T C A G PD
Sbjct: 81 CVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEI 140
Query: 794 SWFRNGE 800
+WF++
Sbjct: 141 TWFKDFL 147
Score = 91.0 bits (226), Expect = 5e-21
Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 48/189 (25%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKMR------- 461
G C A G P P W ++G + + + +L I ++
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE 80
Query: 462 ---------------------------GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY 494
P P V + ++ T+ C A G
Sbjct: 81 CVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTR-----TATMLCAASGN 135
Query: 495 PNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 554
P+P WFK+ + + + + + S G L I + D+G Y C A+N G
Sbjct: 136 PDPEITWFKDF---LPVDTSNNNGRIKQLRSESIGALQIEQSEE-SDQGKYECVATNSAG 191
Query: 555 SIISESVQL 563
+ S L
Sbjct: 192 TRYSAPANL 200
Score = 81.0 bits (200), Expect = 2e-17
Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 26/170 (15%)
Query: 613 EEDKRVFVSYDGALYFSALEQI----DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ 668
+ V DG+ ++ + D Y C + V G L V
Sbjct: 49 NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNV---GEISVSTRLTVLRED--- 102
Query: 669 QLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN 723
+ P FP P+ + C A G P P W + P+ +
Sbjct: 103 --QIPRGFPT-IDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159
Query: 724 RI-------LTIPNVKVEDQGEYICRASNDR-SALESSVTISIQAEPNFT 765
++ L I + DQG+Y C A+N + + + ++ +
Sbjct: 160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHH 209
Score = 75.2 bits (185), Expect = 2e-15
Identities = 48/212 (22%), Positives = 64/212 (30%), Gaps = 55/212 (25%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F + P D + C A G P P W K+ +S++
Sbjct: 7 PRFTRTPVDQTGVSGG-----VASFICQATGDPRPKIVWNKKG-----------KKVSNQ 50
Query: 250 RFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
RF + SG L I R D Y C ASN G IS S +L + R
Sbjct: 51 RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRL--------TVLRE 101
Query: 304 PEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFP----NFVEED 342
+I G P P W +D+ P N
Sbjct: 102 DQIPR---GFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI 158
Query: 343 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
K++ GAL E+ D G Y C +
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSA 190
Score = 75.2 bits (185), Expect = 2e-15
Identities = 48/212 (22%), Positives = 64/212 (30%), Gaps = 55/212 (25%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P F + P D + C A G P P W K+ +S++
Sbjct: 7 PRFTRTPVDQTGVSGG-----VASFICQATGDPRPKIVWNKKG-----------KKVSNQ 50
Query: 523 RFTL------SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 576
RF + SG L I R D Y C ASN G IS S +L + R
Sbjct: 51 RFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRL--------TVLRE 101
Query: 577 PEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFP----NFVEED 615
+I G P P W +D+ P N
Sbjct: 102 DQIPR---GFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRI 158
Query: 616 KRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
K++ GAL E+ D G Y C +
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSA 190
Score = 72.2 bits (177), Expect = 2e-14
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 180 IENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 239
+ P P V + ++ T+ C A G P+P WFK+ +
Sbjct: 99 LREDQIPRGFPTIDMGPQLKVVERTR-----TATMLCAASGNPDPEITWFKDF---LPVD 150
Query: 240 ANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + + + S G L I + D+G Y C A+N G+ S L
Sbjct: 151 TSNNNGRIKQLRSESIGALQIEQSEE-SDQGKYECVATNSAGTRYSAPANL 200
Score = 51.7 bits (124), Expect = 1e-07
Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 25/136 (18%)
Query: 340 EEDKRVFVSYDGALYFSALEQI----DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQ 395
+ V DG+ ++ + D Y C + V G L V
Sbjct: 49 NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNV---GEISVSTRLTVLRED--- 102
Query: 396 QLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN 450
+ P FP P+ + C A G P P W + P+ +
Sbjct: 103 --QIPRGFPT-IDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159
Query: 451 RI-------LTIPNVK 459
++ L I +
Sbjct: 160 QLRSESIGALQIEQSE 175
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 89.3 bits (222), Expect = 8e-22
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
G + L+CVA G P+P Y W + PL ++ +P V +E QG Y C N
Sbjct: 17 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYN 71
Query: 746 DRSALESSVTISIQAEPN 763
DR + +S I E N
Sbjct: 72 DRDSQDSKKVEIIIDELN 89
Score = 70.1 bits (172), Expect = 5e-15
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+PT + + L C A G P P Y+WFK + PL+ +
Sbjct: 4 LQICVEPTSQKLMPG-----STLVLQCVAVGSPIPHYQWFKNE-----------LPLTHE 47
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF 298
+ ++ +E +G+Y C N S S+ V++ +
Sbjct: 48 ----TKKLYMVPYV-DLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 70.1 bits (172), Expect = 5e-15
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
+PT + + L C A G P P Y+WFK + PL+ +
Sbjct: 4 LQICVEPTSQKLMPG-----STLVLQCVAVGSPIPHYQWFKNE-----------LPLTHE 47
Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEF 571
+ ++ +E +G+Y C N S S+ V++ +
Sbjct: 48 ----TKKLYMVPYV-DLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 55.8 bits (135), Expect = 6e-10
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY 464
G + L+CVA G P+P Y W + PL ++ +P V + G Y
Sbjct: 17 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTY 65
Score = 44.2 bits (105), Expect = 6e-06
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 760 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
++ + T + + + L C A G P Y WF+N
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL 42
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 92.9 bits (230), Expect = 1e-21
Identities = 29/131 (22%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 678 KTFPEAP---KAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYFENFNRILTIPNVKV 733
+T PE+ + GD V L C G P ++W SPL E LT+ V
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSF 63
Query: 734 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV---PD 790
++ Y+C A+ + LE + + I + P ++ +T C V
Sbjct: 64 GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123
Query: 791 VTYSWFRNGEL 801
+ + L
Sbjct: 124 LEIDLLKGDHL 134
Score = 64.4 bits (156), Expect = 7e-12
Identities = 37/187 (19%), Positives = 54/187 (28%), Gaps = 33/187 (17%)
Query: 405 KTFPEAP---KAGDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYFENFNRILTIPNVKM 460
+T PE+ + GD V L C G P ++W SPL E LT+ V
Sbjct: 4 ETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSF 63
Query: 461 R--GPYF-----------------IKQPTDVVFDLSKRSIL--NDITLSCYA-GGYPNP- 497
Y I + IT+ C YP
Sbjct: 64 GNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDR 123
Query: 498 -SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG-SYHCKASNKFGS 555
+ K D L+ + R +L +L + +ED G C+A
Sbjct: 124 LEIDLLKG----DHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
Query: 556 IISESVQ 562
+ S
Sbjct: 180 MDSVPTV 186
Score = 60.6 bits (146), Expect = 1e-10
Identities = 16/161 (9%), Positives = 47/161 (29%), Gaps = 29/161 (18%)
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
L + + + +Y C + ++ + ++++ ++
Sbjct: 53 TSTLTMNPVSFGNEHSYLC---TATCESRKLEKGIQVEIYSFPKDPEIHLS--------G 101
Query: 683 APKAGDKVRLECVAFG-YPVP--SYNWTRRGSPLPRNAY--------FENFNRILTIPNV 731
+AG + ++C YP + + + + E + +T V
Sbjct: 102 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV 161
Query: 732 KVEDQGEYICRASND-------RSALESSVTISIQAEPNFT 765
+ +CRA + ++ + + P T
Sbjct: 162 IEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKNT 202
Score = 54.8 bits (131), Expect = 1e-08
Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 26/179 (14%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
++L+C G +P + W + PL+ K + + +P +
Sbjct: 18 SVSLTCSTTGCESPFFSWRT----------QIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 271 SYHCKASNKFGSIISESVQL---AFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPTNYP-- 324
SY C A+ + + + +Q+ +F E +L E G C YP
Sbjct: 68 SYLCTATCESRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGKP----ITVKCSVADVYPFD 122
Query: 325 GVNYYWARD-----YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTG 378
+ + + D++ + + F+ + + C + + +
Sbjct: 123 RLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181
Score = 54.8 bits (131), Expect = 1e-08
Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 26/179 (14%)
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 543
++L+C G +P + W + PL+ K + + +P +
Sbjct: 18 SVSLTCSTTGCESPFFSWRT----------QIDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 544 SYHCKASNKFGSIISESVQL---AFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPTNYP-- 597
SY C A+ + + + +Q+ +F E +L E G C YP
Sbjct: 68 SYLCTATCESRKL-EKGIQVEIYSFPKDPEIHLSGPLEAGKP----ITVKCSVADVYPFD 122
Query: 598 GVNYYWARD-----YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTG 651
+ + + D++ + + F+ + + C + + +
Sbjct: 123 RLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181
Score = 39.8 bits (92), Expect = 0.002
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 210 NDITLSCYA-GGYPNP--SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQV 266
IT+ C YP + K D L+ + R +L +L + +
Sbjct: 107 KPITVKCSVADVYPFDRLEIDLLKGD----HLMKSQEFLEDADRKSLETKSLEVTFTPVI 162
Query: 267 EDRG-SYHCKASNKFGSIISESVQ 289
ED G C+A + S
Sbjct: 163 EDIGKVLVCRAKLHIDEMDSVPTV 186
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 89.5 bits (222), Expect = 2e-20
Identities = 32/194 (16%), Positives = 56/194 (28%), Gaps = 20/194 (10%)
Query: 585 GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC 641
G ++ + W+ + + RV G L + D G Y
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76
Query: 642 ---NVQSKVSDTGR-NGPFFPLKVFPHSNFQQLKFPN-NFPKTFPEAPK-----AGDKVR 691
+ ++ T +G + +Q N + P G +
Sbjct: 77 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136
Query: 692 LECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASND 746
L C +G P P +W + L + + TI V D G+Y N
Sbjct: 137 LTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 196
Query: 747 RSALESSVTISIQA 760
+ S T+S+
Sbjct: 197 YGSETSDFTVSVFI 210
Score = 75.7 bits (186), Expect = 1e-15
Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 26/141 (18%)
Query: 686 AGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILTIPNVKVEDQGEYI 740
+ ++L V + NW+ GS + + L I D+G+Y+
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75
Query: 741 CRASNDRSALESSVTISIQAEPNFTI----------------PLTDKHMDNQA-----DL 779
+ ++ + +V +S QA + D L
Sbjct: 76 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 135
Query: 780 TWTCEAFGVPDVTYSWFRNGE 800
TC +G P SW +N +
Sbjct: 136 NLTCNVWGDPPPEVSWLKNEK 156
Score = 63.7 bits (155), Expect = 2e-11
Identities = 31/202 (15%), Positives = 44/202 (21%), Gaps = 69/202 (34%)
Query: 413 AGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNA----YFENFNRILTIPNV--------- 458
+ ++L V + NW+ GS + + L I
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75
Query: 459 --------------------------------------KMRGPYFIKQPTDVVFDLSKRS 480
K R P V K
Sbjct: 76 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK-- 133
Query: 481 ILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN---LIINDPR 537
+ L+C G P P W K + + G IN
Sbjct: 134 ---ALNLTCNVWGDPPPEVSWLKNEKA--------LAQTDHCNLKFEAGRTAYFTINGVS 182
Query: 538 QVEDRGSYHCKASNKFGSIISE 559
D G Y NK+GS S+
Sbjct: 183 T-ADSGKYGLVVKNKYGSETSD 203
Score = 63.0 bits (153), Expect = 3e-11
Identities = 27/173 (15%), Positives = 47/173 (27%), Gaps = 22/173 (12%)
Query: 312 GKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSC 368
G ++ + W+ + + RV G L + D G Y
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHNGSA--IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76
Query: 369 ---NVQSKVSDTGR-NGPFFPLKVFPHSNFQQLKFPN-NFPKTFPEAPK-----AGDKVR 418
+ ++ T +G + +Q N + P G +
Sbjct: 77 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 136
Query: 419 LECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKM--RGPY 464
L C +G P P +W + L + + TI V G Y
Sbjct: 137 LTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKY 189
Score = 58.0 bits (140), Expect = 1e-09
Identities = 22/103 (21%), Positives = 28/103 (27%), Gaps = 17/103 (16%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
R P V K + L+C G P P W K + +
Sbjct: 115 NRARVLGGLPDVVTIQEGK-----ALNLTCNVWGDPPPEVSWLKNEKA--------LAQT 161
Query: 247 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 286
G IN D G Y NK+GS S+
Sbjct: 162 DHCNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGSETSD 203
Score = 56.4 bits (136), Expect = 4e-09
Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 43/213 (20%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
G TD+ +S I L + + W + I
Sbjct: 1 GSSIALSATDLKI----QSTAEGIQLYSFVTYYVEDLKVNWSHNG--------SAIRYSD 48
Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 302
+ ++G L IN+P D+G Y + + S Q EF +
Sbjct: 49 RVKTGVTGEQIWLQINEP-TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 107
Query: 303 APEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRV 345
I +N + + P P W ++ + +
Sbjct: 108 QAAIAEKNRAR-VLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA--LAQTDHC 164
Query: 346 FVSYD----GALYFSALEQIDAGNYSCNVQSKV 374
+ ++ + + D+G Y V++K
Sbjct: 165 NLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY 197
Score = 56.4 bits (136), Expect = 4e-09
Identities = 30/213 (14%), Positives = 58/213 (27%), Gaps = 43/213 (20%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
G TD+ +S I L + + W + I
Sbjct: 1 GSSIALSATDLKI----QSTAEGIQLYSFVTYYVEDLKVNWSHNG--------SAIRYSD 48
Query: 521 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKR 575
+ ++G L IN+P D+G Y + + S Q EF +
Sbjct: 49 RVKTGVTGEQIWLQINEP-TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLK 107
Query: 576 APEIGNQNWGKAMFCDPPTN-----------------YPGVNYYWARDYFPNFVEEDKRV 618
I +N + + P P W ++ + +
Sbjct: 108 QAAIAEKNRAR-VLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA--LAQTDHC 164
Query: 619 FVSYD----GALYFSALEQIDAGNYSCNVQSKV 647
+ ++ + + D+G Y V++K
Sbjct: 165 NLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY 197
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 89.2 bits (221), Expect = 2e-20
Identities = 26/145 (17%), Positives = 42/145 (28%), Gaps = 21/145 (14%)
Query: 677 PKTFPEAPK-----AGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNA------------- 717
F P G L C P +W R G L
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 718 YFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEPNFTIPLTDKHMDNQ 776
L I ++++ D G+Y C S + ++ P F D+ +
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAAN 121
Query: 777 ADLTWTCEAFGVPD-VTYSWFRNGE 800
+C+A G P+ V W ++
Sbjct: 122 TPFNLSCQAQGPPEPVDLLWLQDAV 146
Score = 80.3 bits (198), Expect = 2e-17
Identities = 34/207 (16%), Positives = 52/207 (25%), Gaps = 66/207 (31%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNA------------- 444
F P G L C P +W R G L
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 445 YFENFNRILTIPNVK-------------MRG--------------PYFIKQPTDVVFDLS 477
L I +++ PYF+++P D +
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAAN 121
Query: 478 KRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP 536
LSC A G P P W ++ PL+ +L +
Sbjct: 122 -----TPFNLSCQAQGPPEPVDLLWLQDA-----------VPLATAPGHGPQRSLHVP-- 163
Query: 537 RQVEDRGSYHCKASNKFGSIISESVQL 563
+ S+ C+A N G S + +
Sbjct: 164 -GLNKTSSFSCEAHNAKGVTTSRTATI 189
Score = 78.8 bits (194), Expect = 8e-17
Identities = 38/187 (20%), Positives = 59/187 (31%), Gaps = 33/187 (17%)
Query: 588 MFCDPPTNYPGVNYYWARDYFP----------NFVEEDKRVFVSYDGALYFSALEQIDAG 637
+ C +W RD + ED++ L ++L+ D G
Sbjct: 22 LRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81
Query: 638 NYSC----NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLE 693
Y C Q+ VS G + + F L+ P + A L
Sbjct: 82 QYQCLVFLGHQTFVSQPGY------VGLEGLPYF--LEEPED------RTVAANTPFNLS 127
Query: 694 CVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES 752
C A G P P W + PL R L +P + + C A N + S
Sbjct: 128 CQAQGPPEPVDLLWLQDAVPLATAPGHGP-QRSLHVPGL--NKTSSFSCEAHNAKGVTTS 184
Query: 753 -SVTISI 758
+ TI++
Sbjct: 185 RTATITV 191
Score = 72.6 bits (178), Expect = 9e-15
Identities = 29/195 (14%), Positives = 53/195 (27%), Gaps = 28/195 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSC-YAGGYPNPSYEWFKED---YVQDRLVANLIDP 245
F+ P ++ TL C P W ++ + D +
Sbjct: 3 SPFVGNPGNITGARGL-----TGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLG 57
Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 305
++ + L I + D G Y C + +S+ + + F PE
Sbjct: 58 EDEQDDWIVVSQLRITSLQL-SDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYF--LEEPE 114
Query: 306 IGNQNWGK-AMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE 359
C P P V+ W +D P + +L+ L
Sbjct: 115 DRTVAANTPFNLSCQAQGPPE---P-VDLLWLQDAVP--LATAPGHGP--QRSLHVPGLN 166
Query: 360 QIDAGNYSCNVQSKV 374
++SC +
Sbjct: 167 --KTSSFSCEAHNAK 179
Score = 72.6 bits (178), Expect = 9e-15
Identities = 29/195 (14%), Positives = 53/195 (27%), Gaps = 28/195 (14%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSC-YAGGYPNPSYEWFKED---YVQDRLVANLIDP 518
F+ P ++ TL C P W ++ + D +
Sbjct: 3 SPFVGNPGNITGARGL-----TGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLG 57
Query: 519 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPE 578
++ + L I + D G Y C + +S+ + + F PE
Sbjct: 58 EDEQDDWIVVSQLRITSLQL-SDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYF--LEEPE 114
Query: 579 IGNQNWGK-AMF-C----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALE 632
C P P V+ W +D P + +L+ L
Sbjct: 115 DRTVAANTPFNLSCQAQGPPE---P-VDLLWLQDAVP--LATAPGHGP--QRSLHVPGLN 166
Query: 633 QIDAGNYSCNVQSKV 647
++SC +
Sbjct: 167 --KTSSFSCEAHNAK 179
Score = 68.8 bits (168), Expect = 2e-13
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 20/102 (19%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSD 248
PYF+++P D + LSC A G P P W ++ PL+
Sbjct: 107 PYFLEEPEDRTVAAN-----TPFNLSCQAQGPPEPVDLLWLQDA-----------VPLAT 150
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+L + + S+ C+A N G S + +
Sbjct: 151 APGHGPQRSLHVP---GLNKTSSFSCEAHNAKGVTTSRTATI 189
Score = 61.5 bits (149), Expect = 6e-11
Identities = 32/165 (19%), Positives = 49/165 (29%), Gaps = 30/165 (18%)
Query: 315 MFCDPPTNYPGVNYYWARDYFP----------NFVEEDKRVFVSYDGALYFSALEQIDAG 364
+ C +W RD + ED++ L ++L+ D G
Sbjct: 22 LRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81
Query: 365 NYSC----NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLE 420
Y C Q+ VS G + + F L+ P + A L
Sbjct: 82 QYQCLVFLGHQTFVSQPGY------VGLEGLPYF--LEEPED------RTVAANTPFNLS 127
Query: 421 CVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPY 464
C A G P P W + PL R L +P + +
Sbjct: 128 CQAQGPPEPVDLLWLQDAVPLATAPGHGP-QRSLHVPGLNKTSSF 171
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 95.1 bits (235), Expect = 2e-20
Identities = 53/362 (14%), Positives = 97/362 (26%), Gaps = 55/362 (15%)
Query: 485 ITLSC-YAGGYPNPSYE--WFKEDYVQDRLV---------------ANLIDPLSDKRFTL 526
++++C Y N W ++ + ANL + + F +
Sbjct: 18 VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVV 77
Query: 527 SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 586
+ L +D G Y C + S V L +
Sbjct: 78 NIAQL------SQDDSGRYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTV 130
Query: 587 AMFCDPPTNYPGVNYYWARD---------YFPNFVEEDK----RVFVSYDGALYF----S 629
+ C T + +V + R+ + G L F +
Sbjct: 131 TINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVIN 190
Query: 630 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 689
L DAG Y C + +N LK P ++ L+ F P+ +
Sbjct: 191 QLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALG--PEVANV 248
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNA-------YFENFNRILTIPNVKVEDQGEYICR 742
+ C G P ++ + + I ++ ED G Y+C
Sbjct: 249 AKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCG 308
Query: 743 ASNDRSALESSVTIS----IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRN 798
A +D E S + + E T + + C + ++
Sbjct: 309 AHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCL 368
Query: 799 GE 800
E
Sbjct: 369 WE 370
Score = 88.9 bits (219), Expect = 2e-18
Identities = 67/549 (12%), Positives = 115/549 (20%), Gaps = 115/549 (20%)
Query: 318 DPPTNYPGVNYYWARDYFPN----FVEEDKRVFVSYDG-------------ALYFSALEQ 360
P + YW R + + V Y G + + L Q
Sbjct: 25 PPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ 84
Query: 361 IDAGNYSCNVQSKVSDTGRN---GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKV 417
D+G Y C + + + + + P + K
Sbjct: 85 DDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKR 144
Query: 418 RLECVAFGYPVPSYNWTRRGSPLPRNAYF-------ENFNRILTIPNVKMR--GPY---- 464
+ G + + I +++ G Y
Sbjct: 145 KSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQA 204
Query: 465 ----------FIKQPTDVVFDLSKRSILNDITLSCY--------------AGGYPNPSYE 500
Q +L + +T C N
Sbjct: 205 GDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVV 264
Query: 501 WFKEDYVQDRLVANLIDPLSDKRFTLSGGN------LIINDPRQVEDRGSYHCKASNKFG 554
P + R L+ + ++I R+ ED G Y C A +
Sbjct: 265 VNTLGKRA---------PAFEGRILLNPQDKDGSFSVVITGLRK-EDAGRYLCGAHSDGQ 314
Query: 555 SIISESVQLAFGFIGE--FNLKRAPEIGNQNWGKAMF-CDPPTNYPGVNYYWARD----- 606
+Q F+ E + + C YW
Sbjct: 315 LQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQN 374
Query: 607 -YFPNFVEEDKRVFVSYDG-------------ALYFSALEQIDAGNYSCNVQSKVSDTGR 652
P V+ + V Y+G + + L DAG Y C
Sbjct: 375 GRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTN-------- 426
Query: 653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSP 712
+ V + T C Y W G
Sbjct: 427 GDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQ 486
Query: 713 LPRNAYFENFNRI-----------LTIPNVKVEDQGEYICRASNDRSALES-SVTISIQA 760
+ LT+ V D+G Y C E+ +V ++++
Sbjct: 487 ALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEE 546
Query: 761 EPNFTIPLT 769
Sbjct: 547 RKAAGSRDV 555
Score = 82.7 bits (203), Expect = 2e-16
Identities = 65/532 (12%), Positives = 126/532 (23%), Gaps = 123/532 (23%)
Query: 160 SIQKLHYLLNDDRTYQYGMDIENPD-------KIPRGPYFIKQPTDVVFDLSKRSILNDI 212
+ +D Y+ G+ I + ++ +GP + DL + +
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGR-----TV 130
Query: 213 TLSCY--AGGYPNPSYEWFKEDYVQDRLV--ANLIDPLSDKRFTLS-------GGNLIIN 261
T++C + + ++ + ++P R L +++IN
Sbjct: 131 TINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVIN 190
Query: 262 DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT 321
R D G Y C+A + S + E + C
Sbjct: 191 QLRL-SDAGQYLCQAGDDSNSNKKNADLQVLKPEPE------LVYEDLRGSVTFHCALGP 243
Query: 322 NYPGVNYYWAR---DYFPNFV---------EEDKRVFVSYDGA-----LYFSALEQIDAG 364
V + R + V + R+ ++ + + L + DAG
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAG 303
Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF 424
Y C S P ++F + + P AG V + C
Sbjct: 304 RYLCGAHSDGQL-QEGSPIQAWQLFVNEESTIPRSPTVVKGV------AGSSVAVLCPYN 356
Query: 425 GYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILND 484
S +
Sbjct: 357 RKESKSIKYWCLWEGAQNG----------------------------------------- 375
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
C + E + L++ + FT+ L D G
Sbjct: 376 ---RCPLLVDSEGWVKAQYEGRLS------LLEEPGNGTFTVILNQL------TSRDAGF 420
Query: 545 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWA 604
Y C + + +++ G + C P + YW
Sbjct: 421 YWCLTNGDTLWRTTVEIKIIEGEPNLK--VPGNVTAVLGETLKVPCHFPCKFSSYEKYWC 478
Query: 605 RDYFPNF-------VEEDKRVFVSYDGALYFS----ALEQIDAGNYSCNVQS 645
+ K + + S + + D G Y C V+
Sbjct: 479 KWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQ 530
Score = 62.7 bits (151), Expect = 3e-10
Identities = 31/241 (12%), Positives = 63/241 (26%), Gaps = 38/241 (15%)
Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL 214
++C A +D + + + + PT V K + + +
Sbjct: 305 YLCGAH--------SDGQLQEGSPIQAWQLFVNEESTIPRSPTVV-----KGVAGSSVAV 351
Query: 215 SCYAGGYPNPSYE-WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPR--------- 264
C + S + W + Q+ L+D + G ++ +P
Sbjct: 352 LCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILN 411
Query: 265 --QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN 322
D G Y C + + +++ G + C P
Sbjct: 412 QLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLK--VPGNVTAVLGETLKVPCHFPCK 469
Query: 323 YPGVNYYWARDYFPNF-------VEEDKRVFVSYDGALYFS----ALEQIDAGNYSCNVQ 371
+ YW + K + + S + + D G Y C V+
Sbjct: 470 FSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVK 529
Query: 372 S 372
Sbjct: 530 Q 530
Score = 56.2 bits (134), Expect = 3e-08
Identities = 19/146 (13%), Positives = 38/146 (26%), Gaps = 25/146 (17%)
Query: 687 GDKVRLEC---VAFGYPVPSYNWTRRGSPLPRNAYFENFNRI------------------ 725
G+ V + C W R+G+ + +
Sbjct: 15 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 726 --LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
+ I + +D G Y C + L V++ + P +D +T C
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC 134
Query: 784 --EAFGVPDVTYSWFRNGELGHQMTD 807
+ + + G + D
Sbjct: 135 PFKTENAQKRKSLYKQIGLYPVLVID 160
Score = 34.6 bits (78), Expect = 0.16
Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Query: 211 DITLSC-YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQ 265
+ + C + + + W K + + + + + S + L +N
Sbjct: 459 TLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLV-T 517
Query: 266 VEDRGSYHCKASNKFGSIISESVQL 290
D G Y C + +V +
Sbjct: 518 RADEGWYWCGVKQGHFYGETAAVYV 542
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 89.0 bits (220), Expect = 3e-20
Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 21/188 (11%)
Query: 584 WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV------FVSYDGALYFSALEQIDAG 637
W + + + + Y + Y + + RV S D ++ + L+ D G
Sbjct: 38 WLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIG 97
Query: 638 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC-VA 696
Y C V+ + F L V L P+ + + G+ +L+C
Sbjct: 98 TYQCKVKKAPGVANKK---FLLTV--------LVKPSGTRCFVDGSEEIGNDFKLKCEPK 146
Query: 697 FGYPVPSYNWTRRGSPL--PRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSV 754
G + W + P E + ++++ N E G Y C N + + +
Sbjct: 147 EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCML 206
Query: 755 TISIQAEP 762
+ + P
Sbjct: 207 RLDVV-PP 213
Score = 74.0 bits (181), Expect = 5e-15
Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 36/158 (22%)
Query: 679 TFPEAP---KAGDKVRLECVAFGYPVPSYN----WTRRGSPLPR---------------N 716
T PE G+ L C P W S N
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 717 AYFENFNRI-------------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN 763
Y + R+ + + N+++ D G Y C+ +++ +P+
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 123
Query: 764 FTIPLTDKHMDNQADLTWTCEA-FGVPDVTYSWFRNGE 800
T D + D CE G + + W + +
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD 161
Score = 64.3 bits (156), Expect = 1e-11
Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 29/188 (15%)
Query: 211 DITLSCYAGGYPNPSY----EWFKED-----------YVQDRLVANLIDPLSDKRFTLSG 255
L C P EW + + P R +
Sbjct: 17 TAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTS 76
Query: 256 -------GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN 308
++ + + Q+ D G+Y CK G ++ L R G+
Sbjct: 77 NDVKSGDASINVTNL-QLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSG--TRCFVDGS 132
Query: 309 QNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNY 366
+ G C+P + + W + + + + +G Y
Sbjct: 133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP-WLAEMTSPVISVKNASSEYSGTY 191
Query: 367 SCNVQSKV 374
SC VQ++V
Sbjct: 192 SCTVQNRV 199
Score = 64.3 bits (156), Expect = 1e-11
Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 29/188 (15%)
Query: 484 DITLSCYAGGYPNPSY----EWFKED-----------YVQDRLVANLIDPLSDKRFTLSG 528
L C P EW + + P R +
Sbjct: 17 TAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTS 76
Query: 529 -------GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN 581
++ + + Q+ D G+Y CK G ++ L R G+
Sbjct: 77 NDVKSGDASINVTNL-QLSDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSG--TRCFVDGS 132
Query: 582 QNWGKAMF--CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNY 639
+ G C+P + + W + + + + +G Y
Sbjct: 133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP-WLAEMTSPVISVKNASSEYSGTY 191
Query: 640 SCNVQSKV 647
SC VQ++V
Sbjct: 192 SCTVQNRV 199
Score = 63.2 bits (153), Expect = 3e-11
Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 22/165 (13%)
Query: 311 WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV------FVSYDGALYFSALEQIDAG 364
W + + + + Y + Y + + RV S D ++ + L+ D G
Sbjct: 38 WLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIG 97
Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC-VA 423
Y C V+ + F L V L P+ + + G+ +L+C
Sbjct: 98 TYQCKVKKAPGVANKK---FLLTV--------LVKPSGTRCFVDGSEEIGNDFKLKCEPK 146
Query: 424 FGYPVPSYNWTRRGSPL--PRNAYFENFNRILTIPNVKMR--GPY 464
G + W + P E + ++++ N G Y
Sbjct: 147 EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTY 191
Score = 58.2 bits (140), Expect = 1e-09
Identities = 32/220 (14%), Positives = 55/220 (25%), Gaps = 77/220 (35%)
Query: 406 TFPEAP---KAGDKVRLECVAFGYPVPSYN----WTRRGSPLPR---------------N 443
T PE G+ L C P W S N
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 444 AYFENFNRI-------------LTIPNVKM--RGPY------------------------ 464
Y + R+ + + N+++ G Y
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 123
Query: 465 FIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR 523
+ D ++ ND L C G +EW K + +
Sbjct: 124 GTRCFVDGSEEIG-----NDFKLKCEPKEGSLPLQFEWQKLS--------DSQTMPTPWL 170
Query: 524 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
++ + + + E G+Y C N+ GS ++L
Sbjct: 171 AEMTSPVISVKNASS-EYSGTYSCTVQNRVGS-DQCMLRL 208
Score = 58.2 bits (140), Expect = 1e-09
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 16/102 (15%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P + D ++ ND L C G +EW K + +
Sbjct: 122 PSGTRCFVDGSEEIG-----NDFKLKCEPKEGSLPLQFEWQKLS--------DSQTMPTP 168
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
++ + + + E G+Y C N+ GS ++L
Sbjct: 169 WLAEMTSPVISVKNASS-EYSGTYSCTVQNRVGS-DQCMLRL 208
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 86.6 bits (214), Expect = 9e-20
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 25/151 (16%)
Query: 612 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 671
+ + ++ + L L+ D+ Y C V+ + + F L ++ Q
Sbjct: 56 ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEV--QLLVFGLTANSDTHLLQ-- 111
Query: 672 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 731
G + L + PS PR + + L++ +
Sbjct: 112 ---------------GQSLTLTLESPPGSSPSVQCRS-----PRGKNIQG-GKTLSVSQL 150
Query: 732 KVEDQGEYICRASNDRSALESSVTISIQAEP 762
+++D G + C ++ +E + I + A
Sbjct: 151 ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181
Score = 80.8 bits (199), Expect = 1e-17
Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 30/151 (19%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPL---------------------PRNAYFENFN 723
K GD V L C A ++W R + ++ N
Sbjct: 8 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
L I N+K+ED YIC + + ++ V + A + + LT T
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLV-FGLTANSDTHLLQGQ-------SLTLTL 119
Query: 784 EAFGVPDVTYSWFR-NGELGHQMTDLLLKAV 813
E+ + G+ L + +
Sbjct: 120 ESPPGSSPSVQCRSPRGKNIQGGKTLSVSQL 150
Score = 78.1 bits (192), Expect = 1e-16
Identities = 28/186 (15%), Positives = 56/186 (30%), Gaps = 52/186 (27%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPL---------------------PRNAYFENFN 450
K GD V L C A ++W R + ++ N
Sbjct: 8 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 451 RILTIPNVKM--RGPYF------IKQPTDVVFDLSKRSILN-----DITLSCYAGGYPNP 497
L I N+K+ Y ++ +VF L+ S + +TL+ + +P
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 127
Query: 498 SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII 557
S + + G L ++ +++D G++ C +
Sbjct: 128 SVQCRSP----------------RGKNIQGGKTLSVSQL-ELQDSGTWTCTVLQNQKK-V 169
Query: 558 SESVQL 563
+ +
Sbjct: 170 EFKIDI 175
Score = 56.9 bits (137), Expect = 2e-09
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 33/177 (18%)
Query: 210 NDITLSCYAGGYPNPSYEWFKED-----YVQDRLVANLIDPLSDK------RFTLSGGNL 258
+ + L+C A + + W + Q + L+D+ + L
Sbjct: 11 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70
Query: 259 IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-C 317
II + ++ED +Y C+ ++ E VQL F L +
Sbjct: 71 IIKNL-KIEDSDTYICEVEDQ-----KEEVQL-----LVFGLTANSDTHLLQGQSLTLTL 119
Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
+ + + + L S LE D+G ++C V
Sbjct: 120 E-SPPGSSPSVQCRS---------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQ 166
Score = 56.1 bits (135), Expect = 4e-09
Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 27/128 (21%)
Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 398
+ + ++ + L L+ D+ Y C V+ + + F L ++ Q
Sbjct: 56 ADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEV--QLLVFGLTANSDTHLLQ-- 111
Query: 399 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 458
G + L + PS PR + + L++ +
Sbjct: 112 ---------------GQSLTLTLESPPGSSPSVQCRS-----PRGKNIQG-GKTLSVSQL 150
Query: 459 KM--RGPY 464
++ G +
Sbjct: 151 ELQDSGTW 158
Score = 54.6 bits (131), Expect = 1e-08
Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 18/80 (22%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+TL+ + +PS + + G L ++ +++D G
Sbjct: 114 SLTLTLESPPGSSPSVQCRSP----------------RGKNIQGGKTLSVSQL-ELQDSG 156
Query: 271 SYHCKASNKFGSIISESVQL 290
++ C + + +
Sbjct: 157 TWTCTVLQNQKK-VEFKIDI 175
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 85.7 bits (212), Expect = 2e-19
Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 31/176 (17%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 648
C+ + + W + + + +L + D+G Y C Q S
Sbjct: 26 CNGNNFFEVSSTKWFHN---------GSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNES 76
Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 707
+ L+VF Q E G + L C + + V +
Sbjct: 77 EPVY------LEVFSDWLLLQAS---------AEVVMEGQPLFLRCHGWRNWDVYKVIYY 121
Query: 708 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS-VTISIQAEP 762
+ G L + N ++I N VED G Y C + ES + I++ P
Sbjct: 122 KDGEALK----YWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 74.2 bits (182), Expect = 2e-15
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 11/116 (9%)
Query: 687 GDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
G+ V L C + V S W GS N L I N K ED GEY C+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGSLSEET------NSSLNIVNAKFEDSGEYKCQHQQ 72
Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV-TYSWFRNGE 800
V + + ++ + M+ Q L C + DV ++++GE
Sbjct: 73 --VNESEPVYLEVFSDWLLLQASAEVVMEGQ-PLFLRCHGWRNWDVYKVIYYKDGE 125
Score = 69.9 bits (171), Expect = 5e-14
Identities = 30/170 (17%), Positives = 50/170 (29%), Gaps = 41/170 (24%)
Query: 414 GDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY------ 464
G+ V L C + V S W GS N L I N K G Y
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGSLSEET------NSSLNIVNAKFEDSGEYKCQHQQ 72
Query: 465 --------FIKQPTDVVFDLSKRSIL--NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVA 513
++ S ++ + L C+ + ++K+
Sbjct: 73 VNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDG-------- 124
Query: 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
++ N+ I + VED G+Y+C SE + +
Sbjct: 125 ------EALKYWYENHNISITNA-TVEDSGTYYCTGKVWQLDYESEPLNI 167
Score = 57.2 bits (138), Expect = 1e-09
Identities = 25/152 (16%), Positives = 45/152 (29%), Gaps = 32/152 (21%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 375
C+ + + W + + + +L + D+G Y C Q S
Sbjct: 26 CNGNNFFEVSSTKWFHN---------GSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNES 76
Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 434
+ L+VF Q E G + L C + + V +
Sbjct: 77 EPVY------LEVFSDWLLLQAS---------AEVVMEGQPLFLRCHGWRNWDVYKVIYY 121
Query: 435 RRGSPLPRNAYFENFNRILTIPNVKMR--GPY 464
+ G L + N ++I N + G Y
Sbjct: 122 KDGEALK----YWYENHNISITNATVEDSGTY 149
Score = 55.3 bits (133), Expect = 6e-09
Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 34/192 (17%)
Query: 186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLID 244
+P+ P P ++TL+C + S +WF
Sbjct: 1 VPQKPKVSLNPPWNRIFKG-----ENVTLTCNGNNFFEVSSTKWFHNG------------ 43
Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAP 304
+ +L I + + ED G Y C+ SE V L F L+ +
Sbjct: 44 ----SLSEETNSSLNIVNAK-FEDSGEYKCQHQQ---VNESEPVYLEV-FSDWLLLQASA 94
Query: 305 EIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG 364
E+ + + C N+ + +D E + + + + + D+G
Sbjct: 95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKD------GEALKYWYE-NHNISITNATVEDSG 147
Query: 365 NYSCNVQSKVSD 376
Y C + D
Sbjct: 148 TYYCTGKVWQLD 159
Score = 51.4 bits (123), Expect = 1e-07
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 22/106 (20%)
Query: 186 IPRGPYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLID 244
+ ++ +VV + L C+ + ++K+
Sbjct: 83 VFSDWLLLQASAEVVM------EGQPLFLRCHGWRNWDVYKVIYYKDG------------ 124
Query: 245 PLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
++ N+ I + VED G+Y+C SE + +
Sbjct: 125 --EALKYWYENHNISITNA-TVEDSGTYYCTGKVWQLDYESEPLNI 167
Score = 31.8 bits (72), Expect = 0.48
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 779 LTWTCEAFGVP-DVTYSWFRNGELGHQMTDLL 809
+T TC + WF NG L + L
Sbjct: 22 VTLTCNGNNFFEVSSTKWFHNGSLSEETNSSL 53
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 82.8 bits (205), Expect = 3e-19
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVKVEDQGEYICR 742
G+ + + C A G P P W + L ++ ++ NR LTI V+ ED+G Y C+
Sbjct: 23 SIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ 82
Query: 743 ASNDRSALESSVTISIQAEPNFT 765
A + + I+ T
Sbjct: 83 ACSVLGCAKVEAFFIIEGAQEKT 105
Score = 68.1 bits (167), Expect = 4e-14
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 14/97 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P + + I +SC A G P P WFK++ + S
Sbjct: 11 PTITGNLENQTTSIG-----ESIEVSCTASGNPPPQIMWFKDN--------ETLVEDSGI 57
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
NL I + ED G Y C+A + G E
Sbjct: 58 VLKDGNRNLTIRRV-RKEDEGLYTCQACSVLGCAKVE 93
Score = 68.1 bits (167), Expect = 4e-14
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 14/97 (14%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P + + I +SC A G P P WFK++ + S
Sbjct: 11 PTITGNLENQTTSIG-----ESIEVSCTASGNPPPQIMWFKDN--------ETLVEDSGI 57
Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 559
NL I + ED G Y C+A + G E
Sbjct: 58 VLKDGNRNLTIRRV-RKEDEGLYTCQACSVLGCAKVE 93
Score = 48.1 bits (115), Expect = 4e-07
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--ENFNRILTIPNVK 459
G+ + + C A G P P W + L ++ ++ NR LTI V+
Sbjct: 23 SIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVR 72
Score = 42.7 bits (101), Expect = 3e-05
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 754 VTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL-----GHQMTD 807
+T+ + P T L ++ + +C A G P WF++ E G + D
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD 61
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 82.9 bits (205), Expect = 1e-18
Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 31/173 (17%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 648
C + + W + + ++ Y D+G Y+C + +S
Sbjct: 26 CQGARSPESDSIQWFHN---------GNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLS 76
Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 707
D L V Q F E G+ + L C ++ P+ +
Sbjct: 77 DP------VHLTVLFEWLVLQTP-----HLEFQE----GETIMLRCHSWKDKPLVKVTFF 121
Query: 708 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 759
+ G F + + +IP G+Y C + + S VTI++Q
Sbjct: 122 QNGKSQK----FSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 80.6 bits (199), Expect = 9e-18
Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 11/116 (9%)
Query: 687 GDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
D V L C P S W G+ +P + + D GEY C+
Sbjct: 19 EDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQ 72
Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGE 800
++L V +++ E + + + + C ++ P V ++F+NG+
Sbjct: 73 --TSLSDPVHLTVLFEWLVLQTPHLEFQEGE-TIMLRCHSWKDKPLVKVTFFQNGK 125
Score = 73.7 bits (181), Expect = 2e-15
Identities = 26/175 (14%), Positives = 43/175 (24%), Gaps = 51/175 (29%)
Query: 414 GDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY------ 464
D V L C P S W G+ +P + + G Y
Sbjct: 19 EDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQ 72
Query: 465 ---------------FIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQ 508
+ Q + F I L C++ P +F+
Sbjct: 73 TSLSDPVHLTVLFEWLVLQTPHLEFQEG-----ETIMLRCHSWKDKPLVKVTFFQNG--- 124
Query: 509 DRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
++F+ I G YHC + + S+ V +
Sbjct: 125 -----------KSQKFSHLDPTFSIPQA-NHSHSGDYHCTGNIGYTLFSSKPVTI 167
Score = 57.5 bits (139), Expect = 1e-09
Identities = 24/163 (14%), Positives = 41/163 (25%), Gaps = 33/163 (20%)
Query: 212 ITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+TL+C + S +WF D G
Sbjct: 22 VTLTCQGARSPESDSIQWFHNG----------------NLIPTHTQPSYRFKA-NNNDSG 64
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYPGVNY 328
Y C+ + +S+ V L F E G+ + C + P V
Sbjct: 65 EYTCQTGQ---TSLSDPVHLTVLFEWLVLQTPHLEF---QEGETIMLRCHSWKDKPLVKV 118
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ 371
+ ++ + F D +G+Y C
Sbjct: 119 TFFQN-------GKSQKFSHLDPTFSIPQANHSHSGDYHCTGN 154
Score = 54.4 bits (131), Expect = 9e-09
Identities = 24/152 (15%), Positives = 44/152 (28%), Gaps = 32/152 (21%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 375
C + + W + + ++ Y D+G Y+C + +S
Sbjct: 26 CQGARSPESDSIQWFHN---------GNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLS 76
Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 434
D L V Q F E G+ + L C ++ P+ +
Sbjct: 77 DP------VHLTVLFEWLVLQTP-----HLEFQE----GETIMLRCHSWKDKPLVKVTFF 121
Query: 435 RRGSPLPRNAYFENFNRILTIPNVKMR--GPY 464
+ G F + + +IP G Y
Sbjct: 122 QNGKSQK----FSHLDPTFSIPQANHSHSGDY 149
Score = 53.3 bits (128), Expect = 3e-08
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 16/82 (19%)
Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
I L C++ P +F+ ++F+ I
Sbjct: 101 ETIMLRCHSWKDKPLVKVTFFQNG--------------KSQKFSHLDPTFSIPQA-NHSH 145
Query: 269 RGSYHCKASNKFGSIISESVQL 290
G YHC + + S+ V +
Sbjct: 146 SGDYHCTGNIGYTLFSSKPVTI 167
Score = 30.9 bits (70), Expect = 0.81
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 779 LTWTCEAFGVPDV-TYSWFRNGEL 801
+T TC+ P+ + WF NG L
Sbjct: 22 VTLTCQGARSPESDSIQWFHNGNL 45
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 80.6 bits (199), Expect = 1e-18
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 685 KAGDKVRLECVAF-GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKVEDQGEYICR 742
+ G V C A P + WTR LP A N ILTI NV+ D G Y+C
Sbjct: 23 RPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN--GILTIRNVQPSDAGTYVCT 80
Query: 743 ASNDRSALESSVTISIQ 759
SN + + + T+ +Q
Sbjct: 81 GSNMFAMDQGTATLHVQ 97
Score = 63.3 bits (154), Expect = 1e-12
Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 14/81 (17%)
Query: 211 DITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
D+T C A P + W + N P R G L I + Q D
Sbjct: 27 DVTFICTAKSKSPAYTLVWTRLH--------NGKLP---SRAMDFNGILTIRNV-QPSDA 74
Query: 270 GSYHCKASNKFGSIISESVQL 290
G+Y C SN F + L
Sbjct: 75 GTYVCTGSNMFAM-DQGTATL 94
Score = 63.3 bits (154), Expect = 1e-12
Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 14/81 (17%)
Query: 484 DITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
D+T C A P + W + N P R G L I + Q D
Sbjct: 27 DVTFICTAKSKSPAYTLVWTRLH--------NGKLP---SRAMDFNGILTIRNV-QPSDA 74
Query: 543 GSYHCKASNKFGSIISESVQL 563
G+Y C SN F + L
Sbjct: 75 GTYVCTGSNMFAM-DQGTATL 94
Score = 51.3 bits (123), Expect = 2e-08
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 412 KAGDKVRLECVAF-GYPVPSYNWTRR-GSPLPRNAYFENFNRILTIPNVKM--RGPY 464
+ G V C A P + WTR LP A N ILTI NV+ G Y
Sbjct: 23 RPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF--NGILTIRNVQPSDAGTY 77
Score = 32.9 bits (75), Expect = 0.082
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
C + P W R + + ++G L ++ DAG Y C
Sbjct: 32 CTAKSKSPAYTLVWTRLHNGKLPSR----AMDFNGILTIRNVQPSDAGTYVC 79
Score = 32.9 bits (75), Expect = 0.082
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 641
C + P W R + + ++G L ++ DAG Y C
Sbjct: 32 CTAKSKSPAYTLVWTRLHNGKLPSR----AMDFNGILTIRNVQPSDAGTYVC 79
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 82.6 bits (204), Expect = 2e-18
Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 31/173 (17%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 648
C + + W + + + S + + A D+G Y C S +S
Sbjct: 29 CQGAYSPEDNSTQWFHN---------ESLISSQASSYFIDAATVNDSGEYRCQTNLSTLS 79
Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 707
D L+V + K D + L C ++ + +
Sbjct: 80 DP------VQLEVH---------IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 708 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 759
+ G + + N IP ++D G Y CR + S +V I+I
Sbjct: 125 QNGKDRK----YFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 173
Score = 77.6 bits (191), Expect = 1e-16
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 11/116 (9%)
Query: 687 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
D V L+C P S W S + I V D GEY C+ +
Sbjct: 22 KDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------ASSYFIDAATVNDSGEYRCQTNL 75
Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGE 800
S L V + + + + C ++ ++ +NG+
Sbjct: 76 --STLSDPVQLEVHIGWLLLQAPRWVFKEED-PIHLRCHSWKNTALHKVTYLQNGK 128
Score = 69.1 bits (169), Expect = 1e-13
Identities = 24/170 (14%), Positives = 46/170 (27%), Gaps = 41/170 (24%)
Query: 414 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPYF----- 465
D V L+C P S W S + I + G Y
Sbjct: 22 KDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------ASSYFIDAATVNDSGEYRCQTNL 75
Query: 466 ---------IKQPTDVVFDLSKRSIL--NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVA 513
++ + + I L C++ + +
Sbjct: 76 STLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNG-------- 127
Query: 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
D+++ + I ++D GSY C+ ++ SE+V +
Sbjct: 128 ------KDRKYFHHNSDFHIPKA-TLKDSGSYFCRGLVGSKNVSSETVNI 170
Score = 53.3 bits (128), Expect = 2e-08
Identities = 25/163 (15%), Positives = 45/163 (27%), Gaps = 33/163 (20%)
Query: 212 ITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+TL C P S +WF + + + I+ V D G
Sbjct: 25 VTLKCQGAYSPEDNSTQWFHNE----------------SLISSQASSYFIDAAT-VNDSG 67
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF--CDPPTNYPGVNY 328
Y C+ + S +S+ VQL + C N
Sbjct: 68 EYRCQTNL---STLSDPVQLEVHIGWLLLQAPRWVF---KEEDPIHLRCHSWKNTALHKV 121
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ 371
+ ++ R + ++ + D+G+Y C
Sbjct: 122 TYLQN-------GKDRKYFHHNSDFHIPKATLKDSGSYFCRGL 157
Score = 50.6 bits (121), Expect = 2e-07
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 22/103 (21%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
G ++ P V + I L C++ + +
Sbjct: 89 GWLLLQAPRWVFKEED------PIHLRCHSWKNTALHKVTYLQNG--------------K 128
Query: 248 DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
D+++ + I ++D GSY C+ ++ SE+V +
Sbjct: 129 DRKYFHHNSDFHIPKA-TLKDSGSYFCRGLVGSKNVSSETVNI 170
Score = 31.0 bits (70), Expect = 0.96
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 779 LTWTCEAFGVP-DVTYSWFRNGELGHQMTDLL 809
+T C+ P D + WF N L
Sbjct: 25 VTLKCQGAYSPEDNSTQWFHNESLISSQASSY 56
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 83.1 bits (205), Expect = 3e-18
Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 18/192 (9%)
Query: 585 GKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG-----ALYFSALEQIDAGN 638
G+ F + + + E + + D ++ L+ D G
Sbjct: 18 GQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 75
Query: 639 YSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----GDKVR 691
Y+ + ++ T K+ + FQ+ ++ F E V
Sbjct: 76 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 135
Query: 692 LECVAFGYPVPS-YNWTRRGSPLPRNAY--FENFNRILTIPNVKVEDQGEYICRASNDRS 748
L+C + W + + + F++ L I +D G Y +DR
Sbjct: 136 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 195
Query: 749 ALESSVTISIQA 760
+S + + +A
Sbjct: 196 KDKSRLKLVDEA 207
Score = 73.8 bits (181), Expect = 4e-15
Identities = 14/145 (9%), Positives = 40/145 (27%), Gaps = 27/145 (18%)
Query: 682 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKVED 735
E + G N+ + + + + ++ ED
Sbjct: 13 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 72
Query: 736 QGEYICRASNDRSALESSVTISIQA-------------------EPNFTIPLTDKHMDNQ 776
+G Y + + ++ S+V + P+F L+ +
Sbjct: 73 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 132
Query: 777 ADLTWTCEAFGV-PDVTYSWFRNGE 800
++ C+ + + W+++
Sbjct: 133 -NVLLKCKVANIKKETHIVWYKDER 156
Score = 61.5 bits (149), Expect = 8e-11
Identities = 22/209 (10%), Positives = 50/209 (23%), Gaps = 72/209 (34%)
Query: 409 EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNV---- 458
E + G N+ + + + + +
Sbjct: 13 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 72
Query: 459 -----------------------------------------KMRGPYFIKQPTDVVFDLS 477
+ +GP+F++ + V
Sbjct: 73 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 132
Query: 478 KRSILNDITLSCYAGGYPNPS-YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIIN 534
++ L C + W+K++ I D++ G L+I
Sbjct: 133 ------NVLLKCKVANIKKETHIVWYKDE--------REISV--DEKHDFKDGICTLLIT 176
Query: 535 DPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ + +D G Y + G S ++L
Sbjct: 177 EFSK-KDAGIYEVILKDDRGKDKS-RLKL 203
Score = 55.7 bits (134), Expect = 8e-09
Identities = 26/206 (12%), Positives = 50/206 (24%), Gaps = 35/206 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F K V + N + + I
Sbjct: 3 DPFTKSELAVEILEKGQVRF----WMQAEKLSGNAKVNYIFNE--------KEIFEGPKY 50
Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI---------- 295
+ + + + Q ED G+Y + + + S V + F
Sbjct: 51 KMHIDRNTGIIEMFMEKL-QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 109
Query: 296 GEFNLKRAPEIGNQNWGKA-------MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS 348
E+ K+ P + + C + W +D ++K F
Sbjct: 110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDERE-ISVDEKHDFKD 168
Query: 349 YDGALYFSALEQIDAGNYSCNVQSKV 374
L + + DAG Y ++
Sbjct: 169 GICTLLITEFSKKDAGIYEVILKDDR 194
Score = 55.7 bits (134), Expect = 8e-09
Identities = 26/206 (12%), Positives = 50/206 (24%), Gaps = 35/206 (16%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
F K V + N + + I
Sbjct: 3 DPFTKSELAVEILEKGQVRF----WMQAEKLSGNAKVNYIFNE--------KEIFEGPKY 50
Query: 523 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFI---------- 568
+ + + + Q ED G+Y + + + S V + F
Sbjct: 51 KMHIDRNTGIIEMFMEKL-QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR 109
Query: 569 GEFNLKRAPEIGNQNWGKA-------MFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVS 621
E+ K+ P + + C + W +D ++K F
Sbjct: 110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDERE-ISVDEKHDFKD 168
Query: 622 YDGALYFSALEQIDAGNYSCNVQSKV 647
L + + DAG Y ++
Sbjct: 169 GICTLLITEFSKKDAGIYEVILKDDR 194
Score = 54.6 bits (131), Expect = 2e-08
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 21/113 (18%)
Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPS-YEWFKEDYVQDRLV 239
+GP+F++ + V ++ L C + W+K++
Sbjct: 109 RQEWIRKQGPHFVEYLSWEVTGEC------NVLLKCKVANIKKETHIVWYKDE------- 155
Query: 240 ANLIDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
I D++ G L+I + + +D G Y + G S ++L
Sbjct: 156 -REISV--DEKHDFKDGICTLLITEFSK-KDAGIYEVILKDDRGKDKS-RLKL 203
Score = 53.4 bits (128), Expect = 4e-08
Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 20/171 (11%)
Query: 312 GKAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDG-----ALYFSALEQIDAGN 365
G+ F + + + E + + D ++ L+ D G
Sbjct: 18 GQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 75
Query: 366 YSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----GDKVR 418
Y+ + ++ T K+ + FQ+ ++ F E V
Sbjct: 76 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 135
Query: 419 LECVAFGYPVPS-YNWTRRGSPLPRNAY--FENFNRILTIPNVKM--RGPY 464
L+C + W + + + F++ L I G Y
Sbjct: 136 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIY 186
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 84.3 bits (208), Expect = 4e-18
Identities = 42/284 (14%), Positives = 78/284 (27%), Gaps = 50/284 (17%)
Query: 485 ITLSCYA-GGYPNPSYE--WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 541
T+ C G +P + D + V D S ++ + E
Sbjct: 21 GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS--------AKASVSVTAEDEG 72
Query: 542 RGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNY 596
C S + ++ E G + C+
Sbjct: 73 TQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE------GTEVTVKCEAHPR- 125
Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV-SDTGRNGP 655
V L A + + ++SC+ +V
Sbjct: 126 AKVTLNGVPAQPL-----------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 174
Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPR 715
L+V + P N+ T+PE + C A+G P+P + G+
Sbjct: 175 TRELRVLYGPRLDERDCPGNW--TWPE----NSQQTPMCQAWGNPLPELKCLKDGTFPL- 227
Query: 716 NAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
I V + +G Y+CRA + + + VT+++
Sbjct: 228 --------PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263
Score = 76.2 bits (187), Expect = 2e-15
Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 29/178 (16%)
Query: 632 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR 691
E +C V FP G +V
Sbjct: 69 EDEGTQRLTCAVILGNQSQET-----------LQTVTIYSFPAPNVILTKPEVSEGTEVT 117
Query: 692 LECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQG-EYICRASND---- 746
++C A + N PR + ED G + C A+ +
Sbjct: 118 VKCEAHPRAKVTLNGVPAQPLGPR---------AQLLLKATPEDNGRSFSCSATLEVAGQ 168
Query: 747 RSALESSVTISIQAEPNFTIPLTDKH---MDNQADLTWTCEAFGVPDVTYSWFRNGEL 801
+ + + P + +N T C+A+G P ++G
Sbjct: 169 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENS-QQTPMCQAWGNPLPELKCLKDGTF 225
Score = 63.5 bits (154), Expect = 4e-11
Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 7/141 (4%)
Query: 679 TFPEAPKAGDKVRLECVAFG-YPVPSYNWT-----RRGSPLPRNAYFENFNRILTIPNVK 732
P + + + C G +PV +R +P + +
Sbjct: 10 VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAE 69
Query: 733 VEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 792
E C + E+ T++I + P + LT + ++T CEA VT
Sbjct: 70 DEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVT 129
Query: 793 YSWFRNGELGHQMTDLLLKAV 813
+ LG + LLLKA
Sbjct: 130 LNGVPAQPLGPR-AQLLLKAT 149
Score = 63.2 bits (153), Expect = 5e-11
Identities = 36/224 (16%), Positives = 57/224 (25%), Gaps = 51/224 (22%)
Query: 359 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR 418
E +C V FP G +V
Sbjct: 69 EDEGTQRLTCAVILGNQSQET-----------LQTVTIYSFPAPNVILTKPEVSEGTEVT 117
Query: 419 LECVAFGYPVPSYNWTRRGSPLPR-----NAYFENFNRILT-IPNVKMRGPYFIKQPTDV 472
++C A + N PR A E+ R + +++ G K T
Sbjct: 118 VKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 177
Query: 473 VFDLSKRSILN-------------DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
+ L + T C A G P P + K
Sbjct: 178 LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK---------------- 221
Query: 520 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
D F L G + + G+Y C+A + G ++ V +
Sbjct: 222 -DGTFPLPIGESVTV---TRDLEGTYLCRARSTQGE-VTREVTV 260
Score = 58.9 bits (142), Expect = 1e-09
Identities = 33/238 (13%), Positives = 60/238 (25%), Gaps = 41/238 (17%)
Query: 212 ITLSCYA-GGYPNPSYE--WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
T+ C G +P + D + V D S ++ + E
Sbjct: 21 GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS--------AKASVSVTAEDEG 72
Query: 269 RGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNY 323
C S + ++ E G + C+
Sbjct: 73 TQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE------GTEVTVKCEAHPR- 125
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV-SDTGRNGP 382
V L A + + ++SC+ +V
Sbjct: 126 AKVTLNGVPAQPL-----------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 174
Query: 383 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL 440
L+V + P N+ T+PE + C A+G P+P + G+
Sbjct: 175 TRELRVLYGPRLDERDCPGNW--TWPE----NSQQTPMCQAWGNPLPELKCLKDGTFP 226
Score = 50.1 bits (119), Expect = 1e-06
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 21/80 (26%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
T C A G P P + K D F L G + + G
Sbjct: 202 QQTPMCQAWGNPLPELKCLK-----------------DGTFPLPIGESVTV---TRDLEG 241
Query: 271 SYHCKASNKFGSIISESVQL 290
+Y C+A + G ++ V +
Sbjct: 242 TYLCRARSTQGE-VTREVTV 260
Score = 42.3 bits (99), Expect = 3e-04
Identities = 31/274 (11%), Positives = 65/274 (23%), Gaps = 64/274 (23%)
Query: 406 TFPEAPKAGDKVRLECVAFG-YPVPSYNWT-----RRGSPLPRNAYFENFNRILTIPNVK 459
P + + + C G +PV +R +P + +
Sbjct: 10 VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAE 69
Query: 460 MRGPYF-------------------IKQPTDVVFDLSKRSIL--NDITLSCYAGGYPNPS 498
G I L+K + ++T+ C A +
Sbjct: 70 DEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVT 129
Query: 499 YEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII- 557
L ++ ++ S+ C A+ + +
Sbjct: 130 LNGVPAQ-------------------PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLI 170
Query: 558 --SESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYPGVNYYWARDYFPNFVE 613
+++ +L + + + P C N P +D +
Sbjct: 171 HKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN-PLPELKCLKDGTFP-LP 228
Query: 614 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
+ V V+ D G Y C +S
Sbjct: 229 IGESVTVTRD-----------LEGTYLCRARSTQ 251
Score = 39.7 bits (92), Expect = 0.002
Identities = 20/170 (11%), Positives = 44/170 (25%), Gaps = 37/170 (21%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
++T+ C A + L ++ ++
Sbjct: 114 TEVTVKCEAHPRAKVTLNGVPAQ-------------------PLGPRAQLLLKATPEDNG 154
Query: 270 GSYHCKASNKFGSII---SESVQLAFGFIGEFNLKRAPEIGNQNWGKA--MFCDPPTNYP 324
S+ C A+ + + +++ +L + + + P C N P
Sbjct: 155 RSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN-P 213
Query: 325 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
+D + + V V+ D G Y C +S
Sbjct: 214 LPELKCLKDGTFP-LPIGESVTVTRD-----------LEGTYLCRARSTQ 251
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 82.8 bits (204), Expect = 4e-18
Identities = 35/186 (18%), Positives = 56/186 (30%), Gaps = 15/186 (8%)
Query: 583 NWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCN 642
W K + + + R + +G+L F + D G Y+ +
Sbjct: 32 AWYKGN--TTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD 89
Query: 643 VQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP 702
+ + + F + K D V L C++
Sbjct: 90 MTDENYRRTQA---------TVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-A 139
Query: 703 SYNWTRRGSPLPRN--AYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQ 759
+ W L N IL I +K ED GEY C SN S S S+ + I
Sbjct: 140 NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199
Query: 760 AEPNFT 765
+P+
Sbjct: 200 FDPHHH 205
Score = 77.4 bits (190), Expect = 2e-16
Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 15/177 (8%)
Query: 210 NDITLSCYAGGYPNPSYEWFKED----------YVQDRLVANLIDPLSDKRFTLSGGNLI 259
N++ L + ++ W+K + +V + + S + S G+L+
Sbjct: 15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL 74
Query: 260 INDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDP 319
+D G Y +++ +V+ + ++
Sbjct: 75 FQMITM-KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT-TVKELDSVTLTC 132
Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA-LYFSALEQIDAGNYSCNVQSKVS 375
+N G N W + ++ +R+ +S + + L +++ DAG Y C + + VS
Sbjct: 133 LSNDIGANIQWLFNSQS--LQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVS 187
Score = 69.3 bits (169), Expect = 2e-13
Identities = 16/142 (11%), Positives = 36/142 (25%), Gaps = 23/142 (16%)
Query: 681 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-------------------- 720
P + V L + ++ W + +
Sbjct: 8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67
Query: 721 NFNRILTIPNVKVEDQGEYICRASNDRSALESSVT--ISIQAEPNFTIPLTDKHMDNQAD 778
N L + ++D G Y +++ + Q + +T+ +
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDS 127
Query: 779 LTWTCEAFGVPDVTYSWFRNGE 800
+T TC + W N +
Sbjct: 128 VTLTCLSND-IGANIQWLFNSQ 148
Score = 68.9 bits (168), Expect = 2e-13
Identities = 27/199 (13%), Positives = 51/199 (25%), Gaps = 53/199 (26%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE-------------------- 447
P + V L + ++ W + +
Sbjct: 8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67
Query: 448 NFNRILTIPNVKMR--GPY-----------------FIKQPTDVVFDLSKRSIL----ND 484
N L + M+ G Y F L + +
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDS 127
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
+TL+C + + +W + + + L I+ ++ ED G
Sbjct: 128 VTLTCLSND-IGANIQWLFNS--------QSLQLTERMTLSQNNSILRIDPIKR-EDAGE 177
Query: 545 YHCKASNKFGSIISESVQL 563
Y C+ SN S S++L
Sbjct: 178 YQCEISNPVSVRRSNSIKL 196
Score = 56.6 bits (136), Expect = 4e-09
Identities = 24/159 (15%), Positives = 41/159 (25%), Gaps = 16/159 (10%)
Query: 310 NWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCN 369
W K + + + R + +G+L F + D G Y+ +
Sbjct: 32 AWYKGN--TTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD 89
Query: 370 VQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP 429
+ + + F + K D V L C++
Sbjct: 90 MTDENYRRTQA---------TVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIG-A 139
Query: 430 SYNWTRRGSPLPRN--AYFENFNRILTIPNVKM--RGPY 464
+ W L N IL I +K G Y
Sbjct: 140 NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEY 178
Score = 54.7 bits (131), Expect = 1e-08
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ +TL+C + + +W + + + L I+ ++ ED
Sbjct: 126 DSVTLTCLSND-IGANIQWLFNS--------QSLQLTERMTLSQNNSILRIDPIKR-EDA 175
Query: 270 GSYHCKASNKFGSIISESVQL 290
G Y C+ SN S S++L
Sbjct: 176 GEYQCEISNPVSVRRSNSIKL 196
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 79.0 bits (195), Expect = 5e-18
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746
GD ++L C S NW R G L + + + + D G Y C S+
Sbjct: 18 GDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSP 76
Query: 747 RSALESSVTISIQAEP 762
+ + ++++
Sbjct: 77 SGSDTTYFSVNVSDAL 92
Score = 62.8 bits (153), Expect = 2e-12
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 19/95 (20%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 248
+ + + + L C S W ++ L
Sbjct: 4 GSSGVEVESFLVHPG-----DLLQLRCRLRDDV-QSINWLRDG-----------VQLAES 46
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
R ++G + + D D G Y C S+ GS
Sbjct: 47 NRTRITGEEVEVQDSVP-ADSGLYACVTSSPSGSD 80
Score = 62.8 bits (153), Expect = 2e-12
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 19/95 (20%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 521
+ + + + L C S W ++ L
Sbjct: 4 GSSGVEVESFLVHPG-----DLLQLRCRLRDDV-QSINWLRDG-----------VQLAES 46
Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
R ++G + + D D G Y C S+ GS
Sbjct: 47 NRTRITGEEVEVQDSVP-ADSGLYACVTSSPSGSD 80
Score = 48.9 bits (117), Expect = 2e-07
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY 464
GD ++L C S NW R G L + + + + G Y
Sbjct: 18 GDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLY 69
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 78.2 bits (193), Expect = 9e-18
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
G V L C P P +W + G PLP + +L +P + +DQG Y C A++
Sbjct: 24 PGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-----SPVLILPEIGPQDQGTYSCVATH 78
Query: 746 DRSALESSVTISIQ-AEP 762
+ S +SI EP
Sbjct: 79 SSHGPQESRAVSISIIEP 96
Score = 61.3 bits (149), Expect = 8e-12
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 22/102 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+ +P +TL+C P+P W K+ PL
Sbjct: 11 VQLVVEPEGGAVAPG-----GTVTLTCEVPAQPSPQIHWMKDG-----------VPLPL- 53
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQL 290
LI+ + +D+G+Y C A++ S +V +
Sbjct: 54 ---PPSPVLILPE-IGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 61.3 bits (149), Expect = 8e-12
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 22/102 (21%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
+ +P +TL+C P+P W K+ PL
Sbjct: 11 VQLVVEPEGGAVAPG-----GTVTLTCEVPAQPSPQIHWMKDG-----------VPLPL- 53
Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI-ISESVQL 563
LI+ + +D+G+Y C A++ S +V +
Sbjct: 54 ---PPSPVLILPE-IGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 48.2 bits (115), Expect = 3e-07
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK 459
G V L C P P +W + G PLP + +L +P +
Sbjct: 24 PGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-----SPVLILPEIG 65
Score = 39.7 bits (93), Expect = 3e-04
Identities = 10/48 (20%), Positives = 15/48 (31%)
Query: 753 SVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
S S E + + +T TCE P W ++G
Sbjct: 2 SSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGV 49
Score = 27.8 bits (62), Expect = 4.1
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 8/47 (17%)
Query: 328 YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
+W +D + + L + D G YSC
Sbjct: 42 IHWMKD--------GVPLPLPPSPVLILPEIGPQDQGTYSCVATHSS 80
Score = 27.8 bits (62), Expect = 4.1
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 8/47 (17%)
Query: 601 YYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
+W +D + + L + D G YSC
Sbjct: 42 IHWMKD--------GVPLPLPPSPVLILPEIGPQDQGTYSCVATHSS 80
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 78.7 bits (194), Expect = 1e-17
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ P+D++ TL+C A G P P+ EW+K V D
Sbjct: 10 PRIVEHPSDLIVSKG-----EPATLNCKAEGRPTPTIEWYKGG----ERVETDKDDPRSH 60
Query: 250 RFTLSGGNLII----NDPRQVEDRGSYHCKASNKFGSIISESVQL 290
R L G+L + + D G Y C A N G +S L
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105
Score = 78.7 bits (194), Expect = 1e-17
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 13/105 (12%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P ++ P+D++ TL+C A G P P+ EW+K V D
Sbjct: 10 PRIVEHPSDLIVSKG-----EPATLNCKAEGRPTPTIEWYKGG----ERVETDKDDPRSH 60
Query: 523 RFTLSGGNLII----NDPRQVEDRGSYHCKASNKFGSIISESVQL 563
R L G+L + + D G Y C A N G +S L
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105
Score = 67.5 bits (165), Expect = 8e-14
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 17/109 (15%)
Query: 675 NFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI---- 725
+FP E P G+ L C A G P P+ W + G + + +R+
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 726 --LTIPNV-----KVEDQGEYICRASNDR-SALESSVTISIQAEPNFTI 766
L + D+G Y+C A N A+ ++ + A +
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
Score = 42.9 bits (101), Expect = 4e-05
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 402 NFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRIL 453
+FP E P G+ L C A G P P+ W + G + + +R+L
Sbjct: 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Score = 35.2 bits (81), Expect = 0.016
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P +D + T C+A G P T W++ GE
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGE 48
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 81.5 bits (201), Expect = 1e-17
Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 31/176 (17%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 648
C + + W + + + S + + A D+G Y C Q S +S
Sbjct: 29 CQGAYSPEDQSTQWFHN---------ESLISSQASSYFIDAATVDDSGEYRCQTQLSTLS 79
Query: 649 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 707
D L+V + K D + L C ++ + +
Sbjct: 80 DP------VQLEVH---------IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 708 RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALES-SVTISIQAEP 762
+ G + + N IP ++D G Y CR + S +V I+I
Sbjct: 125 QNGKGRK----YFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176
Score = 77.2 bits (190), Expect = 3e-16
Identities = 23/132 (17%), Positives = 39/132 (29%), Gaps = 14/132 (10%)
Query: 687 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASN 745
D V L+C P S W S + I V+D GEY C+
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------ASSYFIDAATVDDSGEYRCQTQL 75
Query: 746 DRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAF-GVPDVTYSWFRNGE---L 801
S L V + + + + C ++ ++ +NG+
Sbjct: 76 --STLSDPVQLEVHIGWLLLQAPRWVFKEED-PIHLRCHSWKNTALHKVTYLQNGKGRKY 132
Query: 802 GHQMTDLLLKAV 813
H +D +
Sbjct: 133 FHHNSDFYIPKA 144
Score = 65.3 bits (159), Expect = 3e-12
Identities = 24/170 (14%), Positives = 46/170 (27%), Gaps = 41/170 (24%)
Query: 414 GDKVRLECVAFGYPVP-SYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPYF----- 465
D V L+C P S W S + I + G Y
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------ASSYFIDAATVDDSGEYRCQTQL 75
Query: 466 ---------IKQPTDVVFDLSKRSIL--NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVA 513
++ + + I L C++ + +
Sbjct: 76 STLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNG-------- 127
Query: 514 NLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+++ + I ++D GSY C+ ++ SE+VQ+
Sbjct: 128 ------KGRKYFHHNSDFYIP-KATLKDSGSYFCRGLVGSKNVSSETVQI 170
Score = 53.3 bits (128), Expect = 4e-08
Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 32/152 (21%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ-SKVS 375
C + + W + + + S + + A D+G Y C Q S +S
Sbjct: 29 CQGAYSPEDQSTQWFHN---------ESLISSQASSYFIDAATVDDSGEYRCQTQLSTLS 79
Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWT 434
D L+V + K D + L C ++ + +
Sbjct: 80 DP------VQLEVH---------IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 435 RRGSPLPRNAYFENFNRILTIPNVKMR--GPY 464
+ G + + N IP ++ G Y
Sbjct: 125 QNGKGRK----YFHHNSDFYIPKATLKDSGSY 152
Score = 49.9 bits (119), Expect = 6e-07
Identities = 26/165 (15%), Positives = 46/165 (27%), Gaps = 43/165 (26%)
Query: 212 ITLSCYAGGYPNP-SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+TL C P S +WF + + + I+ V+D G
Sbjct: 25 VTLKCQGAYSPEDQSTQWFHNE----------------SLISSQASSYFIDAAT-VDDSG 67
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAM-------FCDPPTNY 323
Y C+ S +S+ VQL + + C N
Sbjct: 68 EYRCQTQL---STLSDPVQL--------EVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNT 116
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
+ ++ R + ++ Y D+G+Y C
Sbjct: 117 ALHKVTYLQN-------GKGRKYFHHNSDFYIPKATLKDSGSYFC 154
Score = 48.0 bits (114), Expect = 3e-06
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 16/82 (19%)
Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
+ I L C++ + + +++ + I ++D
Sbjct: 104 DPIHLRCHSWKNTALHKVTYLQNG--------------KGRKYFHHNSDFYIP-KATLKD 148
Query: 269 RGSYHCKASNKFGSIISESVQL 290
GSY C+ ++ SE+VQ+
Sbjct: 149 SGSYFCRGLVGSKNVSSETVQI 170
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 80.5 bits (198), Expect = 1e-17
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 9/121 (7%)
Query: 687 GDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
G K+ L C + W + G L + + + GEY C
Sbjct: 13 GSKILLTCSLNDSATEVTGHRWLKGGVVLKED---ALPGQKTEFKVDSDDQWGEYSCVFL 69
Query: 745 NDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT-YSWFRNGELGH 803
+ + I + P + +H++ C++ VP VT ++W++ +
Sbjct: 70 PEPMG---TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSED 126
Query: 804 Q 804
+
Sbjct: 127 K 127
Score = 78.9 bits (194), Expect = 5e-17
Identities = 31/174 (17%), Positives = 49/174 (28%), Gaps = 31/174 (17%)
Query: 414 GDKVRLECVAFGYPVP--SYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPY----- 464
G K+ L C + W + G L + + G Y
Sbjct: 13 GSKILLTCSLNDSATEVTGHRWLKGGVVLKED---ALPGQKTEFKVDSDDQWGEYSCVFL 69
Query: 465 ---------FIKQPTDVVFDLSKRSIL--NDITLSCYAGGYP-NPSYEWFKEDYVQDRLV 512
+ P V S I L C + P + W+K +D+
Sbjct: 70 PEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKA- 128
Query: 513 ANLIDPLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
L++ + F S L I + D G Y C ++ GS + L
Sbjct: 129 --LMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITL 179
Score = 71.2 bits (174), Expect = 2e-14
Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 32/175 (18%)
Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 656
+ W + ++ED F G YSC + T
Sbjct: 28 EVTGHRWLKGGVV--LKEDALP----GQKTEFKVDSDDQWGEYSCVFLPEPMGTAN---- 77
Query: 657 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP-VPSYNWTRRGSPLPR 715
+++ + +K E G+ L C + P V + W + +
Sbjct: 78 --IQLHGPPRVKAVKSS--------EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDK 127
Query: 716 NAYFENFNRI----------LTIPNVKVE-DQGEYICRASNDRSALESSVTISIQ 759
+ +R L I N+ +E D G+Y C ++ + + ++ +T+ ++
Sbjct: 128 ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182
Score = 58.9 bits (142), Expect = 4e-10
Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 13/110 (11%)
Query: 185 KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYP-NPSYEWFKEDYVQDRLVANLI 243
++ P + + + L C + P + W+K +D+ L+
Sbjct: 79 QLHGPPRVKAVKSSEHINEGE-----TAMLVCKSESVPPVTDWAWYKITDSEDKA---LM 130
Query: 244 DPLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + F S L I + D G Y C ++ GS + L
Sbjct: 131 NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITL 179
Score = 48.9 bits (116), Expect = 1e-06
Identities = 29/179 (16%), Positives = 44/179 (24%), Gaps = 38/179 (21%)
Query: 211 DITLSCYAGGYPNP--SYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
I L+C + W K L + L G +
Sbjct: 15 KILLTCSLNDSATEVTGHRWLKGG-----------VVLKEDA--LPGQKTEFKVDSD-DQ 60
Query: 269 RGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-C----DPPTNY 323
G Y C + + + + + E G AM C PP
Sbjct: 61 WGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINE-GE----TAMLVCKSESVPPV-- 113
Query: 324 PGVNYYWARD----YFPNFVEEDKRVFVSYDGALY----FSALEQIDAGNYSCNVQSKV 374
++ W + + R FVS + + D G Y CN S
Sbjct: 114 --TDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSK 170
Score = 48.5 bits (115), Expect = 1e-06
Identities = 24/155 (15%), Positives = 42/155 (27%), Gaps = 34/155 (21%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPF 383
+ W + ++ED F G YSC + T
Sbjct: 28 EVTGHRWLKGGVV--LKEDALP----GQKTEFKVDSDDQWGEYSCVFLPEPMGTAN---- 77
Query: 384 FPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYP-VPSYNWTRRGSPLPR 442
+++ + +K E G+ L C + P V + W + +
Sbjct: 78 --IQLHGPPRVKAVK--------SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDK 127
Query: 443 NAYFENFNRI----------LTIPNVKMR---GPY 464
+ +R L I N+ M G Y
Sbjct: 128 ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY 162
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 77.5 bits (191), Expect = 2e-17
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 677 PKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 731
P P GD ++L C V S NW R G L + + + +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEEVEVRDS 67
Query: 732 KVEDQGEYICRASNDRSALESSVTISI 758
D G Y C S+ + + ++++
Sbjct: 68 IPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 59.4 bits (144), Expect = 3e-11
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 20/104 (19%)
Query: 454 TIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVA 513
T+P + + ++ + + L C S W ++
Sbjct: 2 TLPEQA-QPWGVPVEVESLLVHPG-----DLLQLRCRLRDDV-QSINWLRDG-------- 46
Query: 514 NLIDPL-SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
L R ++G + + D D G Y C S+ GS
Sbjct: 47 ---VQLVESNRTRITGEEVEVRDS-IPADSGLYACVTSSPSGSD 86
Score = 59.4 bits (144), Expect = 3e-11
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 19/95 (20%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL-SD 248
+ ++ + + L C S W ++ L
Sbjct: 10 WGVPVEVESLLVHPG-----DLLQLRCRLRDDV-QSINWLRDG-----------VQLVES 52
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
R ++G + + D D G Y C S+ GS
Sbjct: 53 NRTRITGEEVEVRDS-IPADSGLYACVTSSPSGSD 86
Score = 49.4 bits (118), Expect = 1e-07
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 8/68 (11%)
Query: 404 PKTFPEAP-----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 458
P P GD ++L C V S NW R G L + + + +
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEEVEVRDS 67
Query: 459 KM--RGPY 464
G Y
Sbjct: 68 IPADSGLY 75
Score = 28.2 bits (63), Expect = 3.4
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
W RD + E R ++ + D+G Y+C S
Sbjct: 42 WLRDGVQ--LVESNRTRIT-GEEVEVRDSIPADSGLYACVTSSPS 83
Score = 28.2 bits (63), Expect = 3.4
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 603 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
W RD + E R ++ + D+G Y+C S
Sbjct: 42 WLRDGVQ--LVESNRTRIT-GEEVEVRDSIPADSGLYACVTSSPS 83
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 82.2 bits (202), Expect = 3e-17
Identities = 45/339 (13%), Positives = 88/339 (25%), Gaps = 76/339 (22%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNP---SYEWFKEDYVQDRLVANLIDP 518
Q F + TL+ G P P +Y W K+D P
Sbjct: 3 FTVSIQSNKRCFLAG-----DGFTLTATVAGDEPLPSNLTYTWTKDD-----------QP 46
Query: 519 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA--FGFIGEFNLKRA 576
+ + L + D E+ GSY + ES + +
Sbjct: 47 HEN-----NTATLTVADA-TSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQ 100
Query: 577 PEIGNQNWGKAMFC-------DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS 629
+ + P + ++Y W++ + +
Sbjct: 101 HFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKG----------EDVIDTTQDITIQ 150
Query: 630 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 689
G Y+ V + D+ + K+ + + G++
Sbjct: 151 EFTADKNGVYTVKVWGESEDSAASAS---TKI------MLATMNVDQDVVESKTVALGNE 201
Query: 690 VRLECVAF--------GYPVPS--YNW--TRRGSPLPRNAYFENFNRI----------LT 727
+ L V G P + YNW R G P E + L
Sbjct: 202 ISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLF 261
Query: 728 IPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI 766
+ +D ++ C A + + +V ++ ++
Sbjct: 262 KESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSM 300
Score = 77.9 bits (191), Expect = 1e-15
Identities = 33/234 (14%), Positives = 66/234 (28%), Gaps = 47/234 (20%)
Query: 590 CDPPTNYPG---VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSK 646
+ P + Y W +D P + L + +AG+Y VQ
Sbjct: 24 ATVAGDEPLPSNLTYTWTKDDQP---------HENNTATLTVADATSENAGSYKVTVQDT 74
Query: 647 VSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV---AFGYPVP- 702
+ T F ++ N + + V L + G
Sbjct: 75 DTMTSVESEVFLMEEAE--------LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPAD 126
Query: 703 ----SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
Y+W++ + +TI + G Y + + +S + I
Sbjct: 127 NYELHYSWSKGEDVIDTTQ-------DITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179
Query: 759 QAEPNFTIPLTDKHM----DNQADLTWT------CEAFGVPDVT--YSWFRNGE 800
+ N+ L + ++ G+P++T Y+W+ E
Sbjct: 180 MLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQRE 233
Score = 72.2 bits (176), Expect = 8e-14
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 21/143 (14%)
Query: 686 AGDKVRLECVAFG-YPVP---SYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 741
AGD L G P+P +Y WT+ P N LT+ + E+ G Y
Sbjct: 16 AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE------NNTATLTVADATSENAGSYKV 69
Query: 742 RASNDRSALESS---VTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFG--------VPD 790
+ + + ++ +Q D+ +
Sbjct: 70 TVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYE 129
Query: 791 VTYSWFRNGELGHQMTDLLLKAV 813
+ YSW + ++ D+ ++
Sbjct: 130 LHYSWSKGEDVIDTTQDITIQEF 152
Score = 59.8 bits (144), Expect = 8e-10
Identities = 39/277 (14%), Positives = 70/277 (25%), Gaps = 66/277 (23%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNP---SYEWFKEDYVQDRLVANLIDP 245
Q F + TL+ G P P +Y W K+D P
Sbjct: 3 FTVSIQSNKRCFLAG-----DGFTLTATVAGDEPLPSNLTYTWTKDD-----------QP 46
Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA--FGFIGEFNLKRA 303
+ + L + D E+ GSY + ES + +
Sbjct: 47 HEN-----NTATLTVADA-TSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQ 100
Query: 304 PEIGNQNWGKAMFC-------DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS 356
+ + P + ++Y W++ + +
Sbjct: 101 HFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKG----------EDVIDTTQDITIQ 150
Query: 357 ALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDK 416
G Y+ V + D+ + K+ + + G++
Sbjct: 151 EFTADKNGVYTVKVWGESEDSAASA---STKI------MLATMNVDQDVVESKTVALGNE 201
Query: 417 VRLECVAF--------GYPVPS--YNW--TRRGSPLP 441
+ L V G P + YNW R G P
Sbjct: 202 ISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSP 238
Score = 49.1 bits (116), Expect = 3e-06
Identities = 31/206 (15%), Positives = 62/206 (30%), Gaps = 50/206 (24%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSC---YAGGYPNP-----SYEWFKEDYVQDRLVAN 241
I +P D+ L ++GG Y W K + V D
Sbjct: 93 IVNITEPQHFYVSSQ-----TDVELHATVKFSGGKTPADNYELHYSWSKGEDVID----- 142
Query: 242 LIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISES---VQLAFGFIGEF 298
+ ++ I + + G Y K + + + + LA + +
Sbjct: 143 ------------TTQDITIQEF-TADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQD 189
Query: 299 NLKRAP-EIGNQ---NWGKAMFCD-----PPTNYPGVNYYWARD--YFPNFV-----EED 342
++ +GN+ N+ + P N+Y R+ P + E
Sbjct: 190 VVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEAL 249
Query: 343 KRVFVSYDGALYFSALEQIDAGNYSC 368
+ ++ DG L+ + D + C
Sbjct: 250 EGFSITPDGHLFKESATYDDTAKFWC 275
Score = 39.8 bits (92), Expect = 0.003
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 210 NDITLSCY--------AGGYPNPS--YEWF--KEDYVQDRLVANLIDPLSDKRFTLSGGN 257
N+I+L+ + G PN + Y W+ +E + L+ + + + G+
Sbjct: 200 NEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH 259
Query: 258 LIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 291
L +D + C A + I E+V++A
Sbjct: 260 LFKESA-TYDDTAKFWCVAKL-YQQIEDETVEVA 291
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 77.1 bits (190), Expect = 3e-17
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 17/107 (15%)
Query: 678 KTFPEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFEN 721
AP GD V+LEC P P W R + N Y +N
Sbjct: 10 HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN 69
Query: 722 FNRI-LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 767
R+ L I +V +D G Y A N+ + + + A PN T+P
Sbjct: 70 TGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 61.3 bits (149), Expect = 1e-11
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 18/101 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P FI +P + L C P P W + + ++ +D+
Sbjct: 16 PMFIYKPQSKKVLEGD-----SVKLECQISAIPPPKLFWKRNN--------EMVQFNTDR 62
Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 286
L+I D +D G Y A N+ G
Sbjct: 63 ISLYQDNTGRVTLLIKDV-NKKDAGWYTVSAVNEAGVTTCN 102
Score = 61.3 bits (149), Expect = 1e-11
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 18/101 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P FI +P + L C P P W + + ++ +D+
Sbjct: 16 PMFIYKPQSKKVLEGD-----SVKLECQISAIPPPKLFWKRNN--------EMVQFNTDR 62
Query: 523 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 559
L+I D +D G Y A N+ G
Sbjct: 63 ISLYQDNTGRVTLLIKDV-NKKDAGWYTVSAVNEAGVTTCN 102
Score = 38.9 bits (91), Expect = 9e-04
Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 17/72 (23%)
Query: 405 KTFPEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFEN 448
AP GD V+LEC P P W R + N Y +N
Sbjct: 10 HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN 69
Query: 449 FNRI-LTIPNVK 459
R+ L I +V
Sbjct: 70 TGRVTLLIKDVN 81
Score = 35.5 bits (82), Expect = 0.016
Identities = 9/50 (18%), Positives = 15/50 (30%)
Query: 751 ESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ + P F K + + C+ +P W RN E
Sbjct: 5 HHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNE 54
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 77.1 bits (190), Expect = 4e-17
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL-PRNAYFENF-NRILTIP 729
P + P L CVA G PVP+ W + G + +++ + N +L I
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67
Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 767
K+ D G Y C AS S I +Q P
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQP 105
Score = 68.6 bits (168), Expect = 3e-14
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P + P + + LSC A G P P+ W K+ L+ +
Sbjct: 9 PVIRQGPVNQTVAVDG-----TFVLSCVATGSPVPTILWRKDG--------VLVSTQDSR 55
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
L G L I ++ D G Y C AS G + S +
Sbjct: 56 IKQLENGVLQIRY-AKLGDTGRYTCIASTPSGE-ATWSAYI 94
Score = 68.6 bits (168), Expect = 3e-14
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P + P + + LSC A G P P+ W K+ L+ +
Sbjct: 9 PVIRQGPVNQTVAVDG-----TFVLSCVATGSPVPTILWRKDG--------VLVSTQDSR 55
Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
L G L I ++ D G Y C AS G + S +
Sbjct: 56 IKQLENGVLQIRY-AKLGDTGRYTCIASTPSGE-ATWSAYI 94
Score = 44.4 bits (105), Expect = 1e-05
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPL-PRNAYFENF-NRILTIP 456
P + P L CVA G PVP+ W + G + +++ + N +L I
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67
Query: 457 NVKMR--GPY 464
K+ G Y
Sbjct: 68 YAKLGDTGRY 77
Score = 36.7 bits (85), Expect = 0.005
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 801
P ++ + +C A G P T W ++G L
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVL 48
Score = 34.4 bits (79), Expect = 0.037
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPL 386
W +D +D R+ +G L + D G Y+C + + + +
Sbjct: 42 WRKDGVL-VSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAY------I 94
Query: 387 KVFPHSNFQQLKFPNNFPKTFPEAP 411
+V Q P + P P AP
Sbjct: 95 EVQEFGVPVQPPRPTD-PNLIPSAP 118
Score = 34.4 bits (79), Expect = 0.037
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 603 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPL 659
W +D +D R+ +G L + D G Y+C + + + +
Sbjct: 42 WRKDGVL-VSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAY------I 94
Query: 660 KVFPHSNFQQLKFPNNFPKTFPEAP 684
+V Q P + P P AP
Sbjct: 95 EVQEFGVPVQPPRPTD-PNLIPSAP 118
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 75.9 bits (187), Expect = 6e-17
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
G+ R C G PVP+ W R+G L +A + I +V+ D+G Y
Sbjct: 27 YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYS 86
Query: 741 CRASNDRSALESSVTISIQ 759
N E+ T++IQ
Sbjct: 87 VVVENSEGKQEAEFTLTIQ 105
Score = 61.6 bits (150), Expect = 8e-12
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 17/103 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+ +P + + SC G P P+ W ++ ++ +
Sbjct: 15 ARILTKPRSMTVYEGE-----SARFSCDTDGEPVPTVTWLRKG--------QVLSTSARH 61
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ T + I+ Q D G+Y N G L
Sbjct: 62 QVTTTKYKSTFEISSV-QASDEGNYSVVVENSEGK-QEAEFTL 102
Score = 61.6 bits (150), Expect = 8e-12
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 17/103 (16%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
+ +P + + SC G P P+ W ++ ++ +
Sbjct: 15 ARILTKPRSMTVYEGE-----SARFSCDTDGEPVPTVTWLRKG--------QVLSTSARH 61
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ T + I+ Q D G+Y N G L
Sbjct: 62 QVTTTKYKSTFEISSV-QASDEGNYSVVVENSEGK-QEAEFTL 102
Score = 45.8 bits (109), Expect = 3e-06
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM--RGPY 464
G+ R C G PVP+ W R+G L +A + I +V+ G Y
Sbjct: 27 YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNY 85
Score = 37.3 bits (87), Expect = 0.002
Identities = 7/49 (14%), Positives = 14/49 (28%)
Query: 752 SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ + ++C+ G P T +W R G+
Sbjct: 5 HHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQ 53
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 75.1 bits (185), Expect = 2e-16
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY---FENFNRILTIPNVKVEDQGEYIC 741
K G+++ L G P P WT+ G+PL + +F+ + + D GEY
Sbjct: 37 KVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYEL 96
Query: 742 RASNDRSALESSVTISIQAEP 762
+ +++ I + +
Sbjct: 97 SVQIENMKDTATIRIRVVEKA 117
Score = 53.2 bits (128), Expect = 9e-09
Identities = 12/78 (15%), Positives = 16/78 (20%), Gaps = 16/78 (20%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQ 265
+ L G P P W K PL R + +
Sbjct: 40 EQLNLVVPFQGKPRPQVVWTKGG-----------APLDTSRVHVRTSDFDTVFFVRQA-A 87
Query: 266 VEDRGSYHCKASNKFGSI 283
D G Y +
Sbjct: 88 RSDSGEYELSVQIENMKD 105
Score = 53.2 bits (128), Expect = 9e-09
Identities = 12/78 (15%), Positives = 16/78 (20%), Gaps = 16/78 (20%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS----GGNLIINDPRQ 538
+ L G P P W K PL R + +
Sbjct: 40 EQLNLVVPFQGKPRPQVVWTKGG-----------APLDTSRVHVRTSDFDTVFFVRQA-A 87
Query: 539 VEDRGSYHCKASNKFGSI 556
D G Y +
Sbjct: 88 RSDSGEYELSVQIENMKD 105
Score = 50.5 bits (121), Expect = 8e-08
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY---FENFNRILTIPNVKM--RGPYFI 466
K G+++ L G P P WT+ G+PL + +F+ + + G Y +
Sbjct: 37 KVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYEL 96
Query: 467 K 467
Sbjct: 97 S 97
Score = 30.4 bits (69), Expect = 0.69
Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 10/65 (15%)
Query: 743 ASNDRSALESSVTI-SIQAEPNFTIPLTDKHMDNQA------DLTWTCEAFGVPDVTYSW 795
+S L VTI I P +P +H+ L G P W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLP---RHLRQTYIRKVGEQLNLVVPFQGKPRPQVVW 58
Query: 796 FRNGE 800
+ G
Sbjct: 59 TKGGA 63
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 77.2 bits (190), Expect = 2e-16
Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 18/130 (13%)
Query: 687 GDKVRLECVAF--GYPVPSYNWTRRGSP-------------LPRNAYFENFNRILTIPNV 731
G + L+ +F + W + ++ Y N L I ++
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 732 KVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDV 791
K +DQ Y + + ++ + + P + T TCE D
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW---TCINTTLTCEVMNGTDP 130
Query: 792 TYSWFRNGEL 801
+ +++G+
Sbjct: 131 ELNLYQDGKH 140
Score = 76.1 bits (187), Expect = 4e-16
Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 21/150 (14%)
Query: 612 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 671
+E + +G L L+ D Y ++ F LK+
Sbjct: 54 FKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFD-LKIQE-------- 104
Query: 672 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNV 731
+ P+ L C P N + G L ++ +
Sbjct: 105 -----RVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLK-------LSQRVITHKW 152
Query: 732 KVEDQGEYICRASNDRSALESSVTISIQAE 761
++ C A N S S +S +
Sbjct: 153 TTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
Score = 59.9 bits (145), Expect = 2e-10
Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 51/175 (29%)
Query: 414 GDKVRLECVAF--GYPVPSYNWTRRGSP-------------LPRNAYFENFNRILTIPNV 458
G + L+ +F + W + ++ Y N L I ++
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 459 KM--RGPYFI-------KQPTDVVFDL------SKRSIL---NDITLSCYAGGYPNPSYE 500
K + Y + K + +FDL SK I + TL+C +P
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELN 133
Query: 501 WFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 555
+++ L LS + + C A NK
Sbjct: 134 LYQDG-----------KHLK-----LSQRVITHKWTT--SLSAKFKCTAGNKVSK 170
Score = 59.1 bits (143), Expect = 3e-10
Identities = 25/176 (14%), Positives = 43/176 (24%), Gaps = 31/176 (17%)
Query: 210 NDITLSC--YAGGYPNPSYEWFKED---YVQDRLVANLIDPLSDKRFTLSGGNLIINDPR 264
DI L + +W K + D G L I +
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74
Query: 265 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-----RAPEIGNQNWGKAMFCDP 319
+D+ Y + G + E F+LK P+I + C+
Sbjct: 75 T-DDQDIYKVSIYDTKGKNVLE---------KIFDLKIQERVSKPKISWTCINTTLTCE- 123
Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
N +D + + + + C +KVS
Sbjct: 124 VMNGTDPELNLYQDGKH----------LKLSQRVITHKWTTSLSAKFKCTAGNKVS 169
Score = 59.1 bits (143), Expect = 3e-10
Identities = 25/176 (14%), Positives = 43/176 (24%), Gaps = 31/176 (17%)
Query: 483 NDITLSC--YAGGYPNPSYEWFKED---YVQDRLVANLIDPLSDKRFTLSGGNLIINDPR 537
DI L + +W K + D G L I +
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74
Query: 538 QVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-----RAPEIGNQNWGKAMFCDP 592
+D+ Y + G + E F+LK P+I + C+
Sbjct: 75 T-DDQDIYKVSIYDTKGKNVLE---------KIFDLKIQERVSKPKISWTCINTTLTCE- 123
Query: 593 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 648
N +D + + + + C +KVS
Sbjct: 124 VMNGTDPELNLYQDGKH----------LKLSQRVITHKWTTSLSAKFKCTAGNKVS 169
Score = 56.4 bits (136), Expect = 3e-09
Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 21/127 (16%)
Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLK 398
+E + +G L L+ D Y ++ F LK+
Sbjct: 54 FKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFD-LKIQE-------- 104
Query: 399 FPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIP-N 457
+ P+ L C P N + G L + R++T
Sbjct: 105 -----RVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLS------QRVITHKWT 153
Query: 458 VKMRGPY 464
+ +
Sbjct: 154 TSLSAKF 160
Score = 46.4 bits (110), Expect = 8e-06
Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 18/73 (24%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ TL+C +P +++ L LS +
Sbjct: 116 INTTLTCEVMNGTDPELNLYQDG-----------KHLK-----LSQRVITHKWTT--SLS 157
Query: 270 GSYHCKASNKFGS 282
+ C A NK
Sbjct: 158 AKFKCTAGNKVSK 170
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 77.0 bits (189), Expect = 3e-16
Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 10/110 (9%)
Query: 690 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSA 749
+ + + +P + R + L + + G Y+CR +
Sbjct: 43 MHHDVIFIEWPFRGFFDIHRSAN----------TFFLVVTAANISHDGNYLCRMKLGETE 92
Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
+ +S+ ++ + + LT TC P W
Sbjct: 93 VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 142
Score = 70.1 bits (171), Expect = 8e-14
Identities = 20/143 (13%), Positives = 33/143 (23%), Gaps = 37/143 (25%)
Query: 621 SYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFP 677
+ L +A GNY C +++V+ L V P
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEH------LSVVK-------------P 104
Query: 678 KTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN--------- 723
T + + + C +P P W P N
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAP-TAANGGVMKEKDGSL 163
Query: 724 RILTIPNVKVEDQGEYICRASND 746
+ ++ C ND
Sbjct: 164 SVAVDLSLPKPWHLPVTCVGKND 186
Score = 61.2 bits (148), Expect = 9e-11
Identities = 16/169 (9%), Positives = 37/169 (21%), Gaps = 50/169 (29%)
Query: 417 VRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY---------- 464
+ + + +P + R + L + + G Y
Sbjct: 43 MHHDVIFIEWPFRGFFDIHRSAN----------TFFLVVTAANISHDGNYLCRMKLGETE 92
Query: 465 --------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDR 510
F + +T++C +P+P +W + V
Sbjct: 93 VTKQEHLSVVKPLTLSVHSERSQFPDF-----SVLTVTCTVNAFPHPHVQWLMPEGV--- 144
Query: 511 LVANLIDPLSDKRFTLSG-GNLIINDPRQV--EDRGSYHCKASNKFGSI 556
++ G+L + + C N
Sbjct: 145 ---EPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 58.5 bits (141), Expect = 7e-10
Identities = 11/97 (11%), Positives = 24/97 (24%), Gaps = 14/97 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + +T++C +P+P +W + V ++
Sbjct: 105 LTLSVHSERSQFPDF-----SVLTVTCTVNAFPHPHVQWLMPEGV------EPAPTAANG 153
Query: 250 RFTLSG-GNLIINDPRQV--EDRGSYHCKASNKFGSI 283
G+L + + C N
Sbjct: 154 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 51.6 bits (123), Expect = 2e-07
Identities = 27/183 (14%), Positives = 54/183 (29%), Gaps = 32/183 (17%)
Query: 210 NDITLSCYA---GGYPNPSYEWFKEDYVQDRLVANLI--------DPLS---DKRFTLSG 255
+TL+ Y P WFK +++++ + P D + +
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 256 GNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWG 312
L++ + G+Y C+ + + SV + P+ +
Sbjct: 67 FFLVVTAA-NISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD-FSV--- 121
Query: 313 KAMFC----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY---FSALEQIDAGN 365
+ C P P V + P + V DG+L +L +
Sbjct: 122 LTVTCTVNAFPH---PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLP 178
Query: 366 YSC 368
+C
Sbjct: 179 VTC 181
Score = 51.6 bits (123), Expect = 2e-07
Identities = 27/183 (14%), Positives = 54/183 (29%), Gaps = 32/183 (17%)
Query: 483 NDITLSCYA---GGYPNPSYEWFKEDYVQDRLVANLI--------DPLS---DKRFTLSG 528
+TL+ Y P WFK +++++ + P D + +
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 529 GNLIINDPRQVEDRGSYHCKASNKFGSIISE---SVQLAFGFIGEFNLKRAPEIGNQNWG 585
L++ + G+Y C+ + + SV + P+ +
Sbjct: 67 FFLVVTAA-NISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD-FSV--- 121
Query: 586 KAMFC----DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY---FSALEQIDAGN 638
+ C P P V + P + V DG+L +L +
Sbjct: 122 LTVTCTVNAFPH---PHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLP 178
Query: 639 YSC 641
+C
Sbjct: 179 VTC 181
Score = 50.0 bits (119), Expect = 6e-07
Identities = 16/106 (15%), Positives = 26/106 (24%), Gaps = 27/106 (25%)
Query: 348 SYDGALYFSALEQIDAGNYSC---NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFP 404
+ L +A GNY C +++V+ L V P
Sbjct: 64 ANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEH------LSVVK-------------P 104
Query: 405 KTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAY 445
T + + + C +P P W P
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTA 150
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 74.0 bits (182), Expect = 4e-16
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
+G + L+CV G P P W + G L + + L + D G Y+
Sbjct: 26 VSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYV 85
Query: 741 CRASNDRSALESSVTISIQAEP 762
CRA N ++ +++ P
Sbjct: 86 CRARNAAGEAYAAAAVTVLEPP 107
Score = 57.0 bits (138), Expect = 3e-10
Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 16/96 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F++ P V + L C G P P W K +
Sbjct: 14 PCFLRFPRPVRVVSGA-----EAELKCVVLGEPPPVVVWEKGG--------QQLAASERL 60
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSI 283
F G L++ D G Y C+A N G
Sbjct: 61 SFPADGAEHGLLLTAALP-TDAGVYVCRARNAAGEA 95
Score = 57.0 bits (138), Expect = 3e-10
Identities = 21/96 (21%), Positives = 28/96 (29%), Gaps = 16/96 (16%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P F++ P V + L C G P P W K +
Sbjct: 14 PCFLRFPRPVRVVSGA-----EAELKCVVLGEPPPVVVWEKGG--------QQLAASERL 60
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSI 556
F G L++ D G Y C+A N G
Sbjct: 61 SFPADGAEHGLLLTAALP-TDAGVYVCRARNAAGEA 95
Score = 43.9 bits (104), Expect = 1e-05
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVK 459
+G + L+CV G P P W + G L + + L +
Sbjct: 26 VSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAAL 77
Score = 33.1 bits (76), Expect = 0.085
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P F + + A+ C G P W + G+
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQ 52
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 73.1 bits (180), Expect = 5e-16
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRAS 744
G L+C G PVP W G P+ E L I + ED G Y C A
Sbjct: 25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAE 84
Query: 745 NDRSALESSVTISIQ 759
N + S +++
Sbjct: 85 NALGQVSCSAWVTVH 99
Score = 67.7 bits (166), Expect = 4e-14
Identities = 26/105 (24%), Positives = 31/105 (29%), Gaps = 22/105 (20%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F D + D L C G P P W P+
Sbjct: 12 PSFSSVLKDCAVIEGQ-----DFVLQCSVRGTPVPRITWLLNG-----------QPIQYA 55
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQ 289
R T G L I D ED G+Y C A N G + +V
Sbjct: 56 RSTCEAGVAELHIQDALP-EDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 67.7 bits (166), Expect = 4e-14
Identities = 26/105 (24%), Positives = 31/105 (29%), Gaps = 22/105 (20%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P F D + D L C G P P W P+
Sbjct: 12 PSFSSVLKDCAVIEGQ-----DFVLQCSVRGTPVPRITWLLNG-----------QPIQYA 55
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE---SVQ 562
R T G L I D ED G+Y C A N G + +V
Sbjct: 56 RSTCEAGVAELHIQDALP-EDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 46.2 bits (110), Expect = 2e-06
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 752 SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
SS + ++ P+F+ L D + D C G P +W NG+
Sbjct: 2 SSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQ 50
Score = 44.2 bits (105), Expect = 8e-06
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-ENFNRILTIPNV 458
G L+C G PVP W G P+ E L I +
Sbjct: 25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDA 71
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 74.7 bits (183), Expect = 5e-16
Identities = 28/126 (22%), Positives = 40/126 (31%), Gaps = 23/126 (18%)
Query: 664 HSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-- 716
H + L + F +AP G V L C A G PVP W G
Sbjct: 8 HHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICS 67
Query: 717 ---------------AYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ-A 760
Y ++ ++I + ED G Y CRASND + ++
Sbjct: 68 QLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWV 127
Query: 761 EPNFTI 766
+
Sbjct: 128 RAQAVV 133
Score = 67.0 bits (163), Expect = 2e-13
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 14/121 (11%)
Query: 443 NAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF 502
+++ + + +P F++ P + + L C A G P P +W+
Sbjct: 3 SSHHHHHHSSGLVPRGSHM-AGFVQAPLSQQRWVGG-----SVELHCEAVGSPVPEIQWW 56
Query: 503 KEDYVQDRLVANLIDPLSDKRFTLSG-------GNLIINDPRQVEDRGSYHCKASNKFGS 555
E + + + L D R + + I+ ED G+Y C+ASN
Sbjct: 57 FEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL-VEEDTGTYECRASNDPDR 115
Query: 556 I 556
Sbjct: 116 N 116
Score = 66.6 bits (162), Expect = 3e-13
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F++ P + + L C A G P P +W+ E + + + L D
Sbjct: 22 AGFVQAPLSQQRWVGG-----SVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76
Query: 250 RFTLSG-------GNLIINDPRQVEDRGSYHCKASNKFGSI 283
R + + I+ ED G+Y C+ASN
Sbjct: 77 RVHIHATYHQHAASTISIDTL-VEEDTGTYECRASNDPDRN 116
Score = 43.9 bits (103), Expect = 3e-05
Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 24/98 (24%)
Query: 391 HSNFQQLKFPNNFPKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRN-- 443
H + L + F +AP G V L C A G PVP W G
Sbjct: 8 HHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICS 67
Query: 444 ---------------AYFENFNRILTIPNVKMR--GPY 464
Y ++ ++I + G Y
Sbjct: 68 QLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTY 105
Score = 38.5 bits (89), Expect = 0.002
Identities = 10/58 (17%), Positives = 17/58 (29%)
Query: 743 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+S+ S + F + + CEA G P W+ G+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQ 60
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 72.7 bits (179), Expect = 7e-16
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
KAG LE G P P+ WT S ++ + P+ K D G Y
Sbjct: 15 KAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYK 74
Query: 741 CRASNDRSALESSVTISIQ 759
+ N+ E+ + +Q
Sbjct: 75 LKVKNELGEDEAIFEVIVQ 93
Score = 53.1 bits (128), Expect = 5e-09
Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 17/103 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P + + L G P+P+ W D + +
Sbjct: 3 PKILTASRKIKIKAGF-----THNLEVDFIGAPDPTATWTVGD--------SGAALAPEL 49
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + D G+Y K N+ G ++
Sbjct: 50 LVDAKSSTTSIFFPSA-KRADSGNYKLKVKNELGE-DEAIFEV 90
Score = 53.1 bits (128), Expect = 5e-09
Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 17/103 (16%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P + + L G P+P+ W D + +
Sbjct: 3 PKILTASRKIKIKAGF-----THNLEVDFIGAPDPTATWTVGD--------SGAALAPEL 49
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ + D G+Y K N+ G ++
Sbjct: 50 LVDAKSSTTSIFFPSA-KRADSGNYKLKVKNELGE-DEAIFEV 90
Score = 48.9 bits (117), Expect = 2e-07
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM--RGPYF 465
KAG LE G P P+ WT S ++ + P+ K G Y
Sbjct: 15 KAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYK 74
Query: 466 IK 467
+K
Sbjct: 75 LK 76
Score = 30.8 bits (70), Expect = 0.34
Identities = 6/39 (15%), Positives = 9/39 (23%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P + + G PD T +W
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDS 41
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 72.8 bits (179), Expect = 8e-16
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIP 729
P + P L+C A G P+P +W + G P L I
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQA 760
N+++ D G Y C A++ S + +
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 66.6 bits (163), Expect = 1e-13
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 15/101 (14%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ P + + L C A G P P W KE +
Sbjct: 9 PIILQGPANQTLAVDG-----TALLKCKATGDPLPVISWLKEG--------FTFPGRDPR 55
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
G L I + ++ D G+Y C A++ G S S L
Sbjct: 56 ATIQEQGTLQIKNL-RISDTGTYTCVATSSSGE-TSWSAVL 94
Score = 66.6 bits (163), Expect = 1e-13
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 15/101 (14%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P ++ P + + L C A G P P W KE +
Sbjct: 9 PIILQGPANQTLAVDG-----TALLKCKATGDPLPVISWLKEG--------FTFPGRDPR 55
Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
G L I + ++ D G+Y C A++ G S S L
Sbjct: 56 ATIQEQGTLQIKNL-RISDTGTYTCVATSSSGE-TSWSAVL 94
Score = 45.8 bits (109), Expect = 2e-06
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 404 PKTFPEAPK-----AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA--YFENFNRILTIP 456
P + P L+C A G P+P +W + G P L I
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 457 NVKMR--GPY 464
N+++ G Y
Sbjct: 68 NLRISDTGTY 77
Score = 37.0 bits (86), Expect = 0.003
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P ++ + C+A G P SW + G
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGF 47
Score = 34.3 bits (79), Expect = 0.028
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
W ++ F F D R + G L L D G Y+C S
Sbjct: 42 WLKEGFT-FPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS 85
Score = 34.3 bits (79), Expect = 0.028
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 603 WARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
W ++ F F D R + G L L D G Y+C S
Sbjct: 42 WLKEGFT-FPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS 85
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 72.5 bits (177), Expect = 2e-15
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 14/92 (15%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTR--------------RGSPLPRNAYFENFNRILTIPN 730
G+K+ L C A ++ R + + F LTI
Sbjct: 21 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 80
Query: 731 VKVEDQGEYICRASNDRSALESSVTISIQAEP 762
V DQG Y C AS+ ++S + + +P
Sbjct: 81 VTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 51.3 bits (122), Expect = 5e-08
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 212 ITLSCYAGGYPNPSYEWFKE----DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
+ L+C A N ++ E + +LV + S L I+
Sbjct: 26 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV-TRS 84
Query: 268 DRGSYHCKASNKFGSIISESVQL 290
D+G Y C AS+ + S +
Sbjct: 85 DQGLYTCAASSGLMT-KKNSTFV 106
Score = 51.3 bits (122), Expect = 5e-08
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 485 ITLSCYAGGYPNPSYEWFKE----DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
+ L+C A N ++ E + +LV + S L I+
Sbjct: 26 LVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV-TRS 84
Query: 541 DRGSYHCKASNKFGSIISESVQL 563
D+G Y C AS+ + S +
Sbjct: 85 DQGLYTCAASSGLMT-KKNSTFV 106
Score = 40.9 bits (95), Expect = 2e-04
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 16/69 (23%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTR--------------RGSPLPRNAYFENFNRILTIPN 457
G+K+ L C A ++ R + + F LTI
Sbjct: 21 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 80
Query: 458 VKM--RGPY 464
V +G Y
Sbjct: 81 VTRSDQGLY 89
Score = 29.7 bits (66), Expect = 1.5
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 322 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
YP + + + + + L + + D G Y+C S +
Sbjct: 45 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 97
Score = 29.7 bits (66), Expect = 1.5
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 595 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
YP + + + + + L + + D G Y+C S +
Sbjct: 45 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 97
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 71.5 bits (176), Expect = 2e-15
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
+ + A G P P+ WT+ G + + + + L I D G Y
Sbjct: 19 SSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYT 78
Query: 741 CRASNDRSALESSVTISIQA 760
C N ++ SS ++I+A
Sbjct: 79 CTVKNSAGSVSSSCKLTIKA 98
Score = 60.4 bits (147), Expect = 1e-11
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 16/99 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P + D + A G P P+ W K+ I
Sbjct: 7 PVIVTGLQDTTVSSDS-----VAKFAVKATGEPRPTAIWTKDG--------KAITQGGKY 53
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 286
+ + G L I+ D G Y C N GS+ S
Sbjct: 54 KLSEDKGGFFLEIHKT-DTSDSGLYTCTVKNSAGSVSSS 91
Score = 60.4 bits (147), Expect = 1e-11
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 16/99 (16%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P + D + A G P P+ W K+ I
Sbjct: 7 PVIVTGLQDTTVSSDS-----VAKFAVKATGEPRPTAIWTKDG--------KAITQGGKY 53
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 559
+ + G L I+ D G Y C N GS+ S
Sbjct: 54 KLSEDKGGFFLEIHKT-DTSDSGLYTCTVKNSAGSVSSS 91
Score = 42.3 bits (100), Expect = 4e-05
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVK 459
+ + A G P P+ WT+ G + + + + L I
Sbjct: 19 SSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTD 70
Score = 39.2 bits (92), Expect = 5e-04
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 758 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
I ++P L D + + + + +A G P T W ++G+
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGK 45
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 71.3 bits (175), Expect = 3e-15
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 671 KFPNNFPK-TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE--------- 720
F P TF E+P + + G P P+ W G+ L + Y
Sbjct: 2 HFA---PTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 721 NFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNF 764
++ L + N + G+Y A N+ E ++ P
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
Score = 56.7 bits (137), Expect = 4e-10
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYV--QDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
+ + G P P+ +WF + + + + I + T G L +++P
Sbjct: 17 HHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH---TEYHGCLQLDNPTH-M 72
Query: 268 DRGSYHCKASNKFGSIISESVQLAF 292
+ G Y A N++G + + F
Sbjct: 73 NNGDYTLIAKNEYGK-DEKQISAHF 96
Score = 56.7 bits (137), Expect = 4e-10
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYV--QDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
+ + G P P+ +WF + + + + I + T G L +++P
Sbjct: 17 HHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH---TEYHGCLQLDNPTH-M 72
Query: 541 DRGSYHCKASNKFGSIISESVQLAF 565
+ G Y A N++G + + F
Sbjct: 73 NNGDYTLIAKNEYGK-DEKQISAHF 96
Score = 43.2 bits (102), Expect = 2e-05
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 15/79 (18%)
Query: 398 KFPNNFPK-TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFE--------- 447
F P TF E+P + + G P P+ W G+ L + Y
Sbjct: 2 HFA---PTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 448 NFNRILTIPNVKM--RGPY 464
++ L + N G Y
Sbjct: 59 EYHGCLQLDNPTHMNNGDY 77
Score = 28.9 bits (65), Expect = 1.9
Identities = 6/25 (24%), Positives = 6/25 (24%)
Query: 776 QADLTWTCEAFGVPDVTYSWFRNGE 800
G P WF NG
Sbjct: 16 DHHWCIPFTVKGNPKPALQWFYNGA 40
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 74.4 bits (182), Expect = 3e-15
Identities = 26/186 (13%), Positives = 45/186 (24%), Gaps = 32/186 (17%)
Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDG-ALYFSALEQIDAGNYSCNVQSKVSDTGRNGP 655
+N Y D + AG C +
Sbjct: 36 SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND-------- 87
Query: 656 FFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA-----GDKVRLECVAFGYPVPSYNWT--- 707
+ + + + G+K+ L C A ++
Sbjct: 88 ----ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY 143
Query: 708 -----------RRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTI 756
R + + F LTI V DQG Y C AS+ ++S +
Sbjct: 144 PSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 203
Query: 757 SIQAEP 762
+ +P
Sbjct: 204 RVHEDP 209
Score = 59.8 bits (144), Expect = 3e-10
Identities = 16/143 (11%), Positives = 40/143 (27%), Gaps = 15/143 (10%)
Query: 670 LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT-----RRGSPLPRNAYFENFNR 724
+ ++ V + C+ + + N + +P ++
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLG---SISNLNVSLCARYPEKRFVPDGNRISWDSK 63
Query: 725 I-LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA----DL 779
TIP+ + G C A + + +S + I + + + L
Sbjct: 64 KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 123
Query: 780 TWTCEAFGVPD--VTYSWFRNGE 800
C A + + ++W
Sbjct: 124 VLNCTARTELNVGIDFNWEYPSS 146
Score = 56.3 bits (135), Expect = 5e-09
Identities = 30/202 (14%), Positives = 57/202 (28%), Gaps = 40/202 (19%)
Query: 397 LKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT-----RRGSPLPRNAYFENFNR 451
+ ++ V + C+ + + N + +P ++
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLG---SISNLNVSLCARYPEKRFVPDGNRISWDSK 63
Query: 452 I-LTIPNVKMR--GPYF--------------------IKQPTDVVFDLSKRSILN---DI 485
TIP+ + G F + DVV S L+ +
Sbjct: 64 KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 123
Query: 486 TLSCYAGGYPNPSYEWF----KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 541
L+C A N ++ + +LV + S L I+ D
Sbjct: 124 VLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV-TRSD 182
Query: 542 RGSYHCKASNKFGSIISESVQL 563
+G Y C AS+ + S +
Sbjct: 183 QGLYTCAASSGLMT-KKNSTFV 203
Score = 54.8 bits (131), Expect = 1e-08
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 21/156 (13%)
Query: 141 RWGF--ERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTD 198
+ GF + CEA +D +YQ M I +
Sbjct: 63 KKGFTIPSYMISYAGMVFCEAK--------INDESYQSIMYIVVVVGYRIYDVVLSPSHG 114
Query: 199 VVFDLSKRSILNDITLSCYAGGYPNPSYEWF----KEDYVQDRLVANLIDPLSDKRFTLS 254
+ + + L+C A N ++ + +LV + S
Sbjct: 115 IELSVG-----EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 169
Query: 255 GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
L I+ D+G Y C AS+ + S +
Sbjct: 170 LSTLTIDGV-TRSDQGLYTCAASSGLMT-KKNSTFV 203
Score = 47.5 bits (112), Expect = 4e-06
Identities = 20/177 (11%), Positives = 45/177 (25%), Gaps = 21/177 (11%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+ + C N + R + + G
Sbjct: 26 TVVIPCLGSI-SNLNVSLCARY-------PEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ-NWGKA--MFC----DPPTN- 322
C+A S S + +++ +P G + + G+ + C +
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 323 -----YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
YP + + + + + L + + D G Y+C S +
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194
Score = 47.5 bits (112), Expect = 4e-06
Identities = 20/177 (11%), Positives = 45/177 (25%), Gaps = 21/177 (11%)
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 543
+ + C N + R + + G
Sbjct: 26 TVVIPCLGSI-SNLNVSLCARY-------PEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77
Query: 544 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQ-NWGKA--MFC----DPPTN- 595
C+A S S + +++ +P G + + G+ + C +
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 596 -----YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
YP + + + + + L + + D G Y+C S +
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL 194
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 70.9 bits (174), Expect = 3e-15
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYI 740
A + V+ C A G P+P+ W + G + N + L + +V D+G Y
Sbjct: 22 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 81
Query: 741 CRASNDRSALESSVTISI 758
C N+ ++ + + +
Sbjct: 82 CVVENEYGSINHTYHLDV 99
Score = 59.8 bits (145), Expect = 3e-11
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 8/104 (7%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
R PY+ + + N + C AGG P P+ W K +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPA-ANTVKFRCPAGGNPMPTMRWLKNG---KEFKQE--HRI 55
Query: 247 SDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ +LI+ D+G+Y C N++GS I+ + L
Sbjct: 56 GGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGS-INHTYHL 97
Score = 59.0 bits (143), Expect = 5e-11
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
PY+ + + N + C AGG P P+ W K +
Sbjct: 5 PYWTNTEKMEKRLHAVPA-ANTVKFRCPAGGNPMPTMRWLKNG---KEFKQE--HRIGGY 58
Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ +LI+ D+G+Y C N++GS I+ + L
Sbjct: 59 KVRNQHWSLIMESV-VPSDKGNYTCVVENEYGS-INHTYHL 97
Score = 46.3 bits (110), Expect = 1e-06
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKM--RGPY 464
A + V+ C A G P+P+ W + G + N + L + +V +G Y
Sbjct: 22 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNY 80
Score = 35.1 bits (81), Expect = 0.012
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 759 QAEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYSWFRNGE 800
+ P +T + + + + C A G P T W +NG+
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK 47
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 70.8 bits (174), Expect = 3e-15
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKVEDQGE 738
G + + C G P P W+ G + + L I +V+ +D G
Sbjct: 18 DEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGL 77
Query: 739 YICRASNDRSALESSVTISIQA 760
Y N+ + ++V I I++
Sbjct: 78 YTLSLGNEFGSDSATVNIHIRS 99
Score = 62.7 bits (153), Expect = 3e-12
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P P+D+ D K +T++C G P P W I
Sbjct: 6 PKIEALPSDISIDEGKV-----LTVACAFTGEPTPEVTWSCGG--------RKIHSQEQG 52
Query: 250 RFTL--SGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
RF + + LII D Q +D G Y N+FGS S +V +
Sbjct: 53 RFHIENTDDLTTLIIMDV-QKQDGGLYTLSLGNEFGS-DSATVNI 95
Score = 62.7 bits (153), Expect = 3e-12
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 19/105 (18%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P P+D+ D K +T++C G P P W I
Sbjct: 6 PKIEALPSDISIDEGKV-----LTVACAFTGEPTPEVTWSCGG--------RKIHSQEQG 52
Query: 523 RFTL--SGGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
RF + + LII D Q +D G Y N+FGS S +V +
Sbjct: 53 RFHIENTDDLTTLIIMDV-QKQDGGLYTLSLGNEFGS-DSATVNI 95
Score = 42.7 bits (101), Expect = 3e-05
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKMR--GP 463
G + + C G P P W+ G + + L I +V+ + G
Sbjct: 18 DEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGL 77
Query: 464 Y 464
Y
Sbjct: 78 Y 78
Score = 33.8 bits (78), Expect = 0.034
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P +D +D LT C G P +W G
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGR 44
Score = 28.0 bits (63), Expect = 4.0
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 330 WARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSKV 374
W+ +E R + L +++ D G Y+ ++ ++
Sbjct: 39 WSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEF 86
Score = 28.0 bits (63), Expect = 4.0
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 603 WARDYFPNFVEEDKRVFVSYDG---ALYFSALEQIDAGNYSCNVQSKV 647
W+ +E R + L +++ D G Y+ ++ ++
Sbjct: 39 WSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEF 86
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 70.8 bits (174), Expect = 4e-15
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 741
G V + G P P +W R P+ + E L I + D G Y C
Sbjct: 20 GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTC 79
Query: 742 RASNDRSALESSVTISIQAE 761
+A N+ A + + ++ E
Sbjct: 80 KAVNEYGARQCEARLEVRGE 99
Score = 64.2 bits (157), Expect = 7e-13
Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P F D + D+ +S G P P W + + P +
Sbjct: 6 PTFKVSLMDQSVREGQ-----DVIMSIRVQGEPKPVVSWLRNR--------QPVRP-DQR 51
Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 286
RF L I + D G Y CKA N++G+ E
Sbjct: 52 RFAEEAEGGLCRLRILAA-ERGDAGFYTCKAVNEYGARQCE 91
Score = 64.2 bits (157), Expect = 7e-13
Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 19/101 (18%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P F D + D+ +S G P P W + + P +
Sbjct: 6 PTFKVSLMDQSVREGQ-----DVIMSIRVQGEPKPVVSWLRNR--------QPVRP-DQR 51
Query: 523 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 559
RF L I + D G Y CKA N++G+ E
Sbjct: 52 RFAEEAEGGLCRLRILAA-ERGDAGFYTCKAVNEYGARQCE 91
Score = 41.5 bits (98), Expect = 8e-05
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 759 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+A P F + L D+ + D+ + G P SW RN +
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQ 44
Score = 40.3 bits (95), Expect = 2e-04
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNV 458
G V + G P P +W R P+ + E L I
Sbjct: 20 GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAA 69
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 71.2 bits (175), Expect = 4e-15
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
+AG+ V L G + W + + + + LTI + E G Y
Sbjct: 20 RAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYT 79
Query: 741 CRASNDRSALESSVTISIQAEP 762
N + ++ V +++ +P
Sbjct: 80 LLVENKLGSRQAQVNLTVVDKP 101
Score = 53.9 bits (130), Expect = 5e-09
Identities = 21/95 (22%), Positives = 25/95 (26%), Gaps = 16/95 (16%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P I+ P D + L G + W K I
Sbjct: 8 PQIIQFPEDQKVRAG-----ESVELFGKVTGTQPITCTWMKFR--------KQIQESEHM 54
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
+ S L I RQ E G Y NK GS
Sbjct: 55 KVENSENGSKLTILAARQ-EHCGCYTLLVENKLGS 88
Score = 53.9 bits (130), Expect = 5e-09
Identities = 21/95 (22%), Positives = 25/95 (26%), Gaps = 16/95 (16%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P I+ P D + L G + W K I
Sbjct: 8 PQIIQFPEDQKVRAG-----ESVELFGKVTGTQPITCTWMKFR--------KQIQESEHM 54
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
+ S L I RQ E G Y NK GS
Sbjct: 55 KVENSENGSKLTILAARQ-EHCGCYTLLVENKLGS 88
Score = 44.2 bits (105), Expect = 1e-05
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKMR--GPYF 465
+AG+ V L G + W + + + + LTI + G Y
Sbjct: 20 RAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYT 79
Query: 466 IK 467
+
Sbjct: 80 LL 81
Score = 30.4 bits (69), Expect = 0.77
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 759 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ P D+ + + + G +T +W + +
Sbjct: 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRK 46
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 70.9 bits (174), Expect = 5e-15
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 741
G R++C G P P +W G P+ ++ EN L I V D G Y C
Sbjct: 24 GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTC 83
Query: 742 RASNDRSALESSVTISIQAEPN 763
A+N S+ + + A+ +
Sbjct: 84 IATNRAGQNSFSLELVVAAKES 105
Score = 62.0 bits (151), Expect = 6e-12
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 18/104 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P+F++ P D+ K + C G P P W + + P S
Sbjct: 10 PHFLQAPGDLTVQEGK-----LCRMDCKVSGLPTPDLSWQLDG--------KPVRPDSAH 56
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ + LII D G Y C A+N+ G S++L
Sbjct: 57 KMLVRENGVHSLIIEPV-TSRDAGIYTCIATNRAGQNSF-SLEL 98
Score = 62.0 bits (151), Expect = 6e-12
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 18/104 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P+F++ P D+ K + C G P P W + + P S
Sbjct: 10 PHFLQAPGDLTVQEGK-----LCRMDCKVSGLPTPDLSWQLDG--------KPVRPDSAH 56
Query: 523 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ + LII D G Y C A+N+ G S++L
Sbjct: 57 KMLVRENGVHSLIIEPV-TSRDAGIYTCIATNRAGQNSF-SLEL 98
Score = 42.0 bits (99), Expect = 7e-05
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKMR--GPY 464
G R++C G P P +W G P+ ++ EN L I V R G Y
Sbjct: 24 GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIY 81
Score = 36.6 bits (85), Expect = 0.004
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P+F D + C+ G+P SW +G+
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGK 48
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 69.6 bits (171), Expect = 1e-14
Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 15/99 (15%)
Query: 677 PKTFPEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR- 724
P T AP+ G R P W G L ++ N
Sbjct: 2 PFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 725 ---ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
L I + +D G Y +N + T+ +
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 60.0 bits (146), Expect = 3e-11
Identities = 15/106 (14%), Positives = 26/106 (24%), Gaps = 16/106 (15%)
Query: 183 PDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
P + P + + P +W+
Sbjct: 2 PFTLDHAPRITLRMRSHRVPCG-----QNTRFILNVQSKPTAEVKWYHNG--------VE 48
Query: 243 IDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 286
+ S +T + G L I D +D G+Y +N G
Sbjct: 49 LQESSKIHYTNTSGVLTLEILDCH-TDDSGTYRAVCTNYKGEASDY 93
Score = 57.3 bits (139), Expect = 2e-10
Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 16/99 (16%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P + + P +W+ + S
Sbjct: 9 PRITLRMRSHRVPCG-----QNTRFILNVQSKPTAEVKWYHNG--------VELQESSKI 55
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 559
+T + G L I D +D G+Y +N G
Sbjct: 56 HYTNTSGVLTLEILDCH-TDDSGTYRAVCTNYKGEASDY 93
Score = 42.3 bits (100), Expect = 4e-05
Identities = 13/71 (18%), Positives = 17/71 (23%), Gaps = 15/71 (21%)
Query: 404 PKTFPEAPK-----------AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR- 451
P T AP+ G R P W G L ++ N
Sbjct: 2 PFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 452 ---ILTIPNVK 459
L I +
Sbjct: 62 GVLTLEILDCH 72
Score = 37.3 bits (87), Expect = 0.002
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 756 ISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
++ P T+ + + + + P W+ NG
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGV 47
>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type
lectin-like domain, membrane, immune; 1.64A {Homo
sapiens}
Length = 132
Score = 70.5 bits (173), Expect = 1e-14
Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 11/131 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP +W+Q R+SCY + + ++ NC S L + +E FI L
Sbjct: 4 CPNNWIQNRESCYYVSEIW-SIWHTSQENCLKEGSTLLQIESKEEMDFITGSLRKIKGSY 62
Query: 89 RKWYFGGTQQSPN-LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERV 147
W G +Q + W+ +DG++ + LP Y +K
Sbjct: 63 DYW-VGLSQDGHSGRWLWQDGSSPSP---GLLPAERSQSANQVCGY-----VKSNSLLSS 113
Query: 148 TGMEPLLFICE 158
FICE
Sbjct: 114 NCDTWKYFICE 124
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 75.2 bits (184), Expect = 1e-14
Identities = 26/172 (15%), Positives = 45/172 (26%), Gaps = 26/172 (15%)
Query: 602 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKV 661
W K + G + ++ N +C ++ V GR + V
Sbjct: 191 GWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDV---GRAEVSVQVNV 247
Query: 662 FPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFEN 721
++ Q P G P PS W GS L ++
Sbjct: 248 SFPASVQLHTAVEMHHWCIP------------FSVDGQPAPSLRWLFNGSVLNETSFIFT 295
Query: 722 F-----------NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
+ L + + G Y A+N +S+ + P
Sbjct: 296 EFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 68.2 bits (166), Expect = 2e-12
Identities = 34/174 (19%), Positives = 49/174 (28%), Gaps = 23/174 (13%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF--NRILTIPNVKM---RGPY--- 464
GD V L C G + W + LT+ NV R
Sbjct: 172 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCW 231
Query: 465 ------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLV 512
+ L ++ + G P PS W V +
Sbjct: 232 AENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETS 291
Query: 513 ANLIDPLSDKRFT-LSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAF 565
+ L + G L +N P + G+Y A+N FG S S+ AF
Sbjct: 292 FIFTEFLEPAANETVRHGCLRLNQP-THVNNGNYTLLAANPFGQ-ASASIMAAF 343
Score = 68.2 bits (166), Expect = 2e-12
Identities = 24/119 (20%), Positives = 35/119 (29%), Gaps = 7/119 (5%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF--NRILTIPNVKVE-DQGEYICR 742
GD V L C G + W + LT+ NV + ++ C
Sbjct: 172 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCW 231
Query: 743 ASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 801
A ND E SV + +F + G P + W NG +
Sbjct: 232 AENDVGRAEVSVQV----NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSV 286
Score = 67.5 bits (164), Expect = 5e-12
Identities = 28/232 (12%), Positives = 53/232 (22%), Gaps = 26/232 (11%)
Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSIL----N 210
C +++ L + ++ + P + + +
Sbjct: 115 LHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGD 174
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
D+ L C G W + K L L + + +R
Sbjct: 175 DVLLRCQVEGRGLEQAGWILTE--------LEQSATVMKSGGLPSLGLTLANVTSDLNRK 226
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 330
+ C A N G SVQ+ F P + W
Sbjct: 227 NVTCWAENDVG-RAEVSVQVNVSF-----PASVQLHTAVEMHHWCIPFSVDGQPAPSLRW 280
Query: 331 ARD--------YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
+ + E G L + ++ GNY+ +
Sbjct: 281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332
Score = 65.9 bits (160), Expect = 1e-11
Identities = 37/271 (13%), Positives = 62/271 (22%), Gaps = 42/271 (15%)
Query: 385 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA 444
K + Q+L N L C + + G +
Sbjct: 96 SWKTVQGLSLQELVLSGN---------------PLHCSCALRWLQRWEEEGLGGVPEQKL 140
Query: 445 YFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKE 504
+ +PN P Q + D+ +D+ L C G W
Sbjct: 141 QCHGQGPLAHMPNASCGVPTLKVQVPNASVDVG-----DDVLLRCQVEGRGLEQAGWILT 195
Query: 505 DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 564
+ K L L + + +R + C A N G SVQ+
Sbjct: 196 E--------LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG-RAEVSVQVN 246
Query: 565 FGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARD--------YFPNFVEEDK 616
F P + W + + E
Sbjct: 247 VSF-----PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 301
Query: 617 RVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
G L + ++ GNY+ +
Sbjct: 302 ANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332
Score = 54.0 bits (129), Expect = 9e-08
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVEDR 269
+ G P PS W V + + L + G L +N P +
Sbjct: 263 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP-THVNN 321
Query: 270 GSYHCKASNKFGSIISESVQLAF 292
G+Y A+N FG S S+ AF
Sbjct: 322 GNYTLLAANPFGQ-ASASIMAAF 343
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 73.0 bits (178), Expect = 2e-14
Identities = 36/215 (16%), Positives = 58/215 (26%), Gaps = 46/215 (21%)
Query: 584 WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK-----------RVFVSYDGALYFSALE 632
W K D T NY W + + V L + +
Sbjct: 39 WLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVH 98
Query: 633 QIDAGNYSCNV--QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA--PKAGD 688
D G Y C V S ++ G + LKV H+ NN + E G+
Sbjct: 99 PQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP------SNNVHVSTAEVVQVDEGN 152
Query: 689 KVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRI-------------------- 725
+ + C + W + Y N+
Sbjct: 153 DITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGA 212
Query: 726 --LTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
L I K+ D G C + + L++ + +I
Sbjct: 213 RNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 61.1 bits (147), Expect = 2e-10
Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 22/129 (17%)
Query: 450 NRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQD 509
+ +L + + V D NDIT++C N + W+ +
Sbjct: 124 SVVLKVTGHTPSNNVHVSTAEVVQVDEG-----NDITMTCPCTDCANANVTWYTGPTFFE 178
Query: 510 RLVANLIDPLSDK--------------RFTLSG-GNLIINDPRQVEDRGSYHCKASNKFG 554
PL++K R + SG NL+I + D G C+ + G
Sbjct: 179 NYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKI-TDAGRVWCELATGQG 237
Query: 555 SIISESVQL 563
+
Sbjct: 238 E-LDADRSS 245
Score = 60.7 bits (146), Expect = 3e-10
Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 35/156 (22%)
Query: 155 FICEASIQKLHYLLNDDRTYQYGMDIEN-----PDKIPRGPYFIKQPTDVVFDLSKRSIL 209
+ C+ + ++G+D ++ P + V D
Sbjct: 105 YWCQVA--------QWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEG----- 151
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK--------------RFTLSG 255
NDIT++C N + W+ + PL++K R + SG
Sbjct: 152 NDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSG 211
Query: 256 -GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
NL+I + D G C+ + G +
Sbjct: 212 ARNLVIRAAKI-TDAGRVWCELATGQGE-LDADRSS 245
Score = 59.5 bits (143), Expect = 6e-10
Identities = 26/164 (15%), Positives = 43/164 (26%), Gaps = 45/164 (27%)
Query: 685 KAGDKVRLEC---VAFGYPVPSYNWTRRGSPLPRNAYFENFNRI---------------- 725
AG V L C +A P +W + SP F+
Sbjct: 15 HAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKES 74
Query: 726 -----------------LTIPNVKVEDQGEYICRASN---------DRSALESSVTISIQ 759
L + +V +D G Y C+ + D ++ VT
Sbjct: 75 FGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP 134
Query: 760 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELGH 803
+ +D D+T TC + +W+
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFE 178
Score = 54.5 bits (130), Expect = 3e-08
Identities = 26/226 (11%), Positives = 43/226 (19%), Gaps = 56/226 (24%)
Query: 210 NDITLSC---YAGGYPNPSYEWFKED------------YVQDRLVANLIDPLSDKRF--- 251
+ L C A P W K Y ++ S K
Sbjct: 18 GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGD 77
Query: 252 --------TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 303
L+ L + +D G Y C+ + + +
Sbjct: 78 FLGRASVANLAAPTLRLTHV-HPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSN 136
Query: 304 PEIGNQN--------------------------WGKAMFCDPPTN---YPGVNYYWARDY 334
+ W Y +
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196
Query: 335 FPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
E R S L A + DAG C + + + +
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD 242
Score = 54.5 bits (130), Expect = 3e-08
Identities = 26/226 (11%), Positives = 43/226 (19%), Gaps = 56/226 (24%)
Query: 483 NDITLSC---YAGGYPNPSYEWFKED------------YVQDRLVANLIDPLSDKRF--- 524
+ L C A P W K Y ++ S K
Sbjct: 18 GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGD 77
Query: 525 --------TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA 576
L+ L + +D G Y C+ + + +
Sbjct: 78 FLGRASVANLAAPTLRLTHV-HPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSN 136
Query: 577 PEIGNQN--------------------------WGKAMFCDPPTN---YPGVNYYWARDY 607
+ W Y +
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196
Query: 608 FPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRN 653
E R S L A + DAG C + + + +
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDAD 242
Score = 51.8 bits (123), Expect = 2e-07
Identities = 26/146 (17%), Positives = 40/146 (27%), Gaps = 21/146 (14%)
Query: 311 WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDK-----------RVFVSYDGALYFSALE 359
W K D T NY W + + V L + +
Sbjct: 39 WLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVH 98
Query: 360 QIDAGNYSCNV--QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA--PKAGD 415
D G Y C V S ++ G + LKV H+ NN + E G+
Sbjct: 99 PQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTP------SNNVHVSTAEVVQVDEGN 152
Query: 416 KVRLECVAFGYPVPSYNWTRRGSPLP 441
+ + C + W +
Sbjct: 153 DITMTCPCTDCANANVTWYTGPTFFE 178
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 71.1 bits (174), Expect = 2e-14
Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 16/137 (11%)
Query: 687 GDKVRLECVAF--GYPVPSYNWTRRGSPL-----------PRNAYFENFNRILTIPNVKV 733
G + L F + W R + + A+ N L I N+
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 734 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
+D G Y + + + ++ + P+ ++ T TCE DV
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYW---ECSNATLTCEVLEGTDVEL 127
Query: 794 SWFRNGELGHQMTDLLL 810
++ E + +
Sbjct: 128 KLYQGKEHLRSLRQKTM 144
Score = 69.6 bits (170), Expect = 6e-14
Identities = 21/144 (14%), Positives = 35/144 (24%), Gaps = 21/144 (14%)
Query: 614 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFP 673
+ + +G L L + D+G Y+ V S N L+
Sbjct: 51 KSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKAL------------DLRIL 98
Query: 674 NNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKV 733
K P L C + L R T+
Sbjct: 99 EMVSK--PMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-------RQKTMSYQWT 149
Query: 734 EDQGEYICRASNDRSALESSVTIS 757
+ + C+A N S ++
Sbjct: 150 NLRAPFKCKAVNRVSQESEMEVVN 173
Score = 55.7 bits (134), Expect = 4e-09
Identities = 17/124 (13%), Positives = 30/124 (24%), Gaps = 19/124 (15%)
Query: 341 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFP 400
+ + +G L L + D+G Y+ V S N L+
Sbjct: 51 KSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKAL------------DLRIL 98
Query: 401 NNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM 460
K P L C + L + ++ +
Sbjct: 99 EMVSK--PMIYWECSNATLTCEVLEGTDVELKLYQGKEHLR-----SLRQKTMSYQWTNL 151
Query: 461 RGPY 464
R P+
Sbjct: 152 RAPF 155
Score = 53.0 bits (127), Expect = 3e-08
Identities = 22/173 (12%), Positives = 47/173 (27%), Gaps = 29/173 (16%)
Query: 211 DITLSC--YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSG-GNLIINDPRQVE 267
I L+ + W + + + L F + G+L I + + +
Sbjct: 13 GINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR-D 71
Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRA-----PEIGNQNWGKAMFCDPPTN 322
D G+Y+ + G+ I +L+ P I + + C+
Sbjct: 72 DSGTYNVTVYSTNGTRILN---------KALDLRILEMVSKPMIYWECSNATLTCEVL-E 121
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
V + + + S + C ++VS
Sbjct: 122 GTDVELKLYQG----------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 164
Score = 49.2 bits (117), Expect = 6e-07
Identities = 25/179 (13%), Positives = 48/179 (26%), Gaps = 49/179 (27%)
Query: 414 GDKVRLECVAF--GYPVPSYNWTRRGSPL-----------PRNAYFENFNRILTIPNVKM 460
G + L F + W R + + A+ N L I N+
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 461 --RGPYFI-------KQPTDVVFDLSKRSIL---------NDITLSCYAGGYPNPSYEWF 502
G Y + + + DL ++ ++ TL+C + + +
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLY 130
Query: 503 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 561
+ K S ++ + R + CKA N+ V
Sbjct: 131 Q-----------------GKEHLRSLRQKTMS-YQWTNLRAPFKCKAVNRVSQESEMEV 171
Score = 41.5 bits (97), Expect = 3e-04
Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 21/122 (17%)
Query: 168 LNDDRTYQYGMDIENPD-KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY 226
+D TY + + + + + ++V ++ TL+C +
Sbjct: 70 RDDSGTYN--VTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVEL 127
Query: 227 EWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE 286
+ ++ K S ++ + R + CKA N+
Sbjct: 128 KLYQ-----------------GKEHLRSLRQKTMS-YQWTNLRAPFKCKAVNRVSQESEM 169
Query: 287 SV 288
V
Sbjct: 170 EV 171
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 71.6 bits (175), Expect = 2e-14
Identities = 26/127 (20%), Positives = 38/127 (29%), Gaps = 14/127 (11%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI-------------LTIPNVKV 733
G V LEC R N R IP+V+V
Sbjct: 17 GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76
Query: 734 EDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
D G+Y C + +T+ ++A I + ++ TC+A G P
Sbjct: 77 RDSGQYRCLVICGAAWDYKYLTVKVKASY-MRIDTRILEVPGTGEVQLTCQARGYPLAEV 135
Query: 794 SWFRNGE 800
SW
Sbjct: 136 SWQNVSV 142
Score = 70.1 bits (171), Expect = 7e-14
Identities = 24/191 (12%), Positives = 55/191 (28%), Gaps = 30/191 (15%)
Query: 594 TNYPGVNYYWARDYFPNFVEE----DKRVFVSYDG------ALYFSALEQIDAGNYSCNV 643
R + +R + + + +++ D+G Y C V
Sbjct: 27 DRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLV 86
Query: 644 QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVAFGYPV 701
+ +K ++ + + +V+L C A GYP+
Sbjct: 87 ICGA--------------AWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPL 132
Query: 702 PSYNWTRRGSPLPRNAYFENFN---RILTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
+W P ++ ++ ++ +K + + C N +S I
Sbjct: 133 AEVSWQNVSVPAN-TSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP 191
Query: 759 QAEPNFTIPLT 769
+ +P T
Sbjct: 192 LSRMEPKVPRT 202
Score = 61.6 bits (149), Expect = 6e-11
Identities = 23/187 (12%), Positives = 47/187 (25%), Gaps = 54/187 (28%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI-------------LTIPNVKM 460
G V LEC R N R IP+V++
Sbjct: 17 GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76
Query: 461 --RGPY------------------FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYE 500
G Y + + + ++ L+C A GYP
Sbjct: 77 RDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVS 136
Query: 501 WFK------EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG 554
W +++ + + ++ L + + ++ C N
Sbjct: 137 WQNVSVPANTSHIRT----------PEGLYQVT-SVLRLKP----QPSRNFSCMFWNAHM 181
Query: 555 SIISESV 561
++ ++
Sbjct: 182 KELTSAI 188
Score = 52.7 bits (126), Expect = 7e-08
Identities = 28/190 (14%), Positives = 51/190 (26%), Gaps = 23/190 (12%)
Query: 211 DITLSCYAGGYPNPSYEWFK---EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
++L C E + + D + + L +++ L I QV
Sbjct: 19 SVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSV-QVR 77
Query: 268 DRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVN 327
D G Y C + + + R E + C YP
Sbjct: 78 DSGQYRCLVICGAAW-DYKYLTVKVKASYMRIDTRILE-VPGTGEVQLTCQ-ARGYPLAE 134
Query: 328 YYWARDYFPNFVEEDKRVFVSYDGALYFSA---LEQIDAGNYSCNVQSK---------VS 375
W P + + +G ++ L+ + N+SC + +
Sbjct: 135 VSWQNVSVPA----NTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIID 190
Query: 376 DTGRNGPFFP 385
R P P
Sbjct: 191 PLSRMEPKVP 200
Score = 46.6 bits (110), Expect = 8e-06
Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 26/135 (19%)
Query: 321 TNYPGVNYYWARDYFPNFVEE----DKRVFVSYDG------ALYFSALEQIDAGNYSCNV 370
R + +R + + + +++ D+G Y C V
Sbjct: 27 DRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLV 86
Query: 371 QSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA--GDKVRLECVAFGYPV 428
+ +K ++ + + +V+L C A GYP+
Sbjct: 87 ICGA--------------AWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPL 132
Query: 429 PSYNWTRRGSPLPRN 443
+W P +
Sbjct: 133 AEVSWQNVSVPANTS 147
Score = 45.4 bits (107), Expect = 2e-05
Identities = 10/85 (11%), Positives = 28/85 (32%), Gaps = 21/85 (24%)
Query: 210 NDITLSCYAGGYPNPSYEWFK------EDYVQDRLVANLIDPLSDKRFTLSGGNLIINDP 263
++ L+C A GYP W +++ + + ++ L +
Sbjct: 119 GEVQLTCQARGYPLAEVSWQNVSVPANTSHIRT----------PEGLYQVT-SVLRLKP- 166
Query: 264 RQVEDRGSYHCKASNKFGSIISESV 288
+ ++ C N ++ ++
Sbjct: 167 ---QPSRNFSCMFWNAHMKELTSAI 188
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 68.3 bits (167), Expect = 5e-14
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 10/104 (9%)
Query: 675 NFPKTF--PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--------ENFNR 724
+P E P+ + +E V G P P+ +W G PL + E
Sbjct: 6 YYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65
Query: 725 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPL 768
L + G Y A N ++ EP +
Sbjct: 66 CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEV 109
Score = 55.6 bits (134), Expect = 1e-09
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVAN--LIDPLSDKRFTLSGGNLIINDPRQVED 268
+ + G P P+ W + + +I + +S G L+ N P +
Sbjct: 22 EHCIEFVVRGNPPPTLHWLHNG----QPLRESKIIHVEYYQEGEISEGCLLFNKP-THYN 76
Query: 269 RGSYHCKASNKFGSIISESVQLAF 292
G+Y A N G+ ++++ F
Sbjct: 77 NGNYTLIAKNPLGT-ANQTINGHF 99
Score = 55.6 bits (134), Expect = 1e-09
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVAN--LIDPLSDKRFTLSGGNLIINDPRQVED 541
+ + G P P+ W + + +I + +S G L+ N P +
Sbjct: 22 EHCIEFVVRGNPPPTLHWLHNG----QPLRESKIIHVEYYQEGEISEGCLLFNKP-THYN 76
Query: 542 RGSYHCKASNKFGSIISESVQLAF 565
G+Y A N G+ ++++ F
Sbjct: 77 NGNYTLIAKNPLGT-ANQTINGHF 99
Score = 40.6 bits (95), Expect = 3e-04
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 10/68 (14%)
Query: 402 NFPKTF--PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--------ENFNR 451
+P E P+ + +E V G P P+ +W G PL + E
Sbjct: 6 YYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEG 65
Query: 452 ILTIPNVK 459
L
Sbjct: 66 CLLFNKPT 73
Score = 31.3 bits (71), Expect = 0.35
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 754 VTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
V +++ P + + + + G P T W NG+
Sbjct: 1 VALTVYYPPRVVSL---EEPELRLEHCIEFVVRGNPPPTLHWLHNGQ 44
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 67.7 bits (166), Expect = 5e-14
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 741
G R++ G P P +W G + + E L V+ D G Y C
Sbjct: 20 GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC 79
Query: 742 RASNDRSALESSVTISIQAE 761
A N +V + + A+
Sbjct: 80 VAKNRAGEATFTVQLDVLAK 99
Score = 58.9 bits (143), Expect = 5e-11
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 18/104 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P FI+ P ++ D + + G P P W+ +
Sbjct: 6 PRFIQVPENMSIDEGR-----FCRMDFKVSGLPAPDVSWYLNG--------RTVQSDDLH 52
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ +S LI R D G+Y C A N+ G +VQL
Sbjct: 53 KMIVSEKGLHSLIFEVVR-ASDAGAYACVAKNRAGEATF-TVQL 94
Score = 58.9 bits (143), Expect = 5e-11
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 18/104 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P FI+ P ++ D + + G P P W+ +
Sbjct: 6 PRFIQVPENMSIDEGR-----FCRMDFKVSGLPAPDVSWYLNG--------RTVQSDDLH 52
Query: 523 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ +S LI R D G+Y C A N+ G +VQL
Sbjct: 53 KMIVSEKGLHSLIFEVVR-ASDAGAYACVAKNRAGEATF-TVQL 94
Score = 40.4 bits (95), Expect = 2e-04
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVK 459
G R++ G P P +W G + + E L V+
Sbjct: 20 GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70
Score = 37.7 bits (88), Expect = 0.002
Identities = 9/39 (23%), Positives = 14/39 (35%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P F + +D + G+P SW+ NG
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGR 44
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 68.7 bits (168), Expect = 7e-14
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYI 740
G R +C GYP P W + +P+ + +F E N LTI V +D +Y
Sbjct: 55 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT 114
Query: 741 CRASNDRSALESSVTISIQAEP 762
C+A N + + ++
Sbjct: 115 CKAVNSLGEATCTAELLVETMG 136
Score = 59.9 bits (145), Expect = 1e-10
Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 17/100 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
PYF K D+ C GYP+P WFK+D N +
Sbjct: 42 PYFTKTILDMEVVEGS-----AARFDCKVEGYPDPEVMWFKDD--------NPVKESRHF 88
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 286
+ L I++ +D Y CKA N G
Sbjct: 89 QIDYDEEGNCSLTISEVC-GDDDAKYTCKAVNSLGEATCT 127
Score = 59.9 bits (145), Expect = 1e-10
Identities = 24/100 (24%), Positives = 32/100 (32%), Gaps = 17/100 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
PYF K D+ C GYP+P WFK+D N +
Sbjct: 42 PYFTKTILDMEVVEGS-----AARFDCKVEGYPDPEVMWFKDD--------NPVKESRHF 88
Query: 523 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 559
+ L I++ +D Y CKA N G
Sbjct: 89 QIDYDEEGNCSLTISEVC-GDDDAKYTCKAVNSLGEATCT 127
Score = 48.7 bits (116), Expect = 6e-07
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 728 IPNVKVEDQGEYIC----RASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTC 783
+ K + N+ + LE +P FT + D + + + C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 784 EAFGVPDVTYSWFRNGE 800
+ G PD WF++
Sbjct: 64 KVEGYPDPEVMWFKDDN 80
Score = 41.4 bits (97), Expect = 2e-04
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNV 458
G R +C GYP P W + +P+ + +F E N LTI V
Sbjct: 55 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV 105
>1tdq_B Aggrecan core protein; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: d.169.1.1
Length = 130
Score = 68.1 bits (167), Expect = 7e-14
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ 87
+C + W +++ CYR +T DA+ C+ S L+++ +E F+ ++ Q
Sbjct: 6 QCEEGWTKFQGHCYRHFPDR-ETWVDAERRCREQQSHLSSIVTPEEQEFV-----NKNAQ 59
Query: 88 RRKWYFGGT-QQSPNLWVNEDGTNLN 112
+W G + + DG +L
Sbjct: 60 DYQW-IGLNDRTIEGDFRWSDGHSLQ 84
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 67.5 bits (165), Expect = 9e-14
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
++V L C P WT+ G + + E+ R L +P V++ED GEY+C
Sbjct: 28 LERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE 86
Query: 743 ASNDRSALESSVTISIQAEPNFTIP 767
++ +S T+++ P I
Sbjct: 87 IDDES----ASFTVTVTEPPVRIIY 107
Score = 42.8 bits (101), Expect = 3e-05
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 16/93 (17%)
Query: 196 PTDVVFDLSKRSIL----NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF 251
+ +V+ K + + L+C P W K+ +
Sbjct: 11 SSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDG--------EEVVESPALLL 61
Query: 252 TLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
L++ Q+ED G Y C+ ++ S
Sbjct: 62 QKEDTVRRLVLPAV-QLEDSGEYLCEIDDESAS 93
Score = 42.8 bits (101), Expect = 3e-05
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 16/93 (17%)
Query: 469 PTDVVFDLSKRSIL----NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF 524
+ +V+ K + + L+C P W K+ +
Sbjct: 11 SSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTKDG--------EEVVESPALLL 61
Query: 525 TLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
L++ Q+ED G Y C+ ++ S
Sbjct: 62 QKEDTVRRLVLPAV-QLEDSGEYLCEIDDESAS 93
Score = 39.4 bits (92), Expect = 6e-04
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM 460
++V L C P WT+ G + + E+ R L +P V++
Sbjct: 28 LERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQL 77
Score = 29.0 bits (65), Expect = 2.2
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 752 SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 801
SS T + + + + TCE P W ++GE
Sbjct: 5 SSGT-DVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEE 52
Score = 28.2 bits (63), Expect = 4.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNV 370
W +D V E + + + L A++ D+G Y C +
Sbjct: 46 WTKDGEE--VVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI 87
Score = 28.2 bits (63), Expect = 4.1
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 603 WARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNV 643
W +D V E + + + L A++ D+G Y C +
Sbjct: 46 WTKDGEE--VVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI 87
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 67.4 bits (165), Expect = 9e-14
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEY 739
+ G C +W +PL N +LT+ + ++D G
Sbjct: 26 QEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTI 85
Query: 740 ICRASNDRSALESSVTISIQAEP 762
A + R +S + + +P
Sbjct: 86 YFEAGDQR----ASAALRVTEKP 104
Score = 48.5 bits (116), Expect = 3e-07
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 17/101 (16%)
Query: 458 VKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 517
V+ R + I+ DV T C WF + +
Sbjct: 9 VQGRRVHIIEDLEDVDVQEGS-----SATFRCRISPANYEPVHWFLDK--------TPLH 55
Query: 518 PLSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGS 555
G L + ++D G+ + +A ++ S
Sbjct: 56 ANELNEIDAQPGGYHVLTLRQL-ALKDSGTIYFEAGDQRAS 95
Score = 47.8 bits (114), Expect = 6e-07
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 17/99 (17%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
R + I+ DV T C WF + +
Sbjct: 11 GRRVHIIEDLEDVDVQEGS-----SATFRCRISPANYEPVHWFLDK--------TPLHAN 57
Query: 247 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGS 282
G L + ++D G+ + +A ++ S
Sbjct: 58 ELNEIDAQPGGYHVLTLRQL-ALKDSGTIYFEAGDQRAS 95
Score = 43.2 bits (102), Expect = 2e-05
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 7/60 (11%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKMR--GPY 464
+ G C +W +PL N +LT+ + ++ G
Sbjct: 26 QEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTI 85
Score = 37.8 bits (88), Expect = 0.002
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 752 SSVTISIQAE-PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
S + +Q + L D + + T+ C WF +
Sbjct: 3 SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKT 52
>1sl6_A C-type lectin DC-signr; sugar binding protein; HET: GAL NDG FUC;
2.25A {Homo sapiens} SCOP: d.169.1.1 PDB: 1xar_A
Length = 184
Score = 69.1 bits (169), Expect = 1e-13
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 19 SQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM 78
+ L CP+ W ++ +CY S + +D+ C+ + + L + A+E F+
Sbjct: 43 KTAFERLCRHCPKDWTFFQGNCYFMSNSQ-RNWHDSVTACQEVRAQLVVIKTAEEQNFLQ 101
Query: 79 YQLFWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
Q R W G + W DG+ L+
Sbjct: 102 LQT--SRSNRFSW-MGLSDLNQEGTWQWVDGSPLS 133
>1ypq_A Oxidised low density lipoprotein (lectin-like) receptor 1; oxidized
low density lipoprotein receptor, LOX-1, CTLD, C- type
lectin like domain; 1.40A {Homo sapiens} SCOP: d.169.1.1
PDB: 1ypu_A 1yxk_A 3vlg_A 1ypo_A 1yxj_A
Length = 135
Score = 67.8 bits (166), Expect = 1e-13
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CPQ W+ + ++CY F ++ C SLD+ L +N + FI +
Sbjct: 9 CPQDWIWHGENCYLFSSGS-FNWEKSQEKCLSLDAKLLKINSTADLDFIQQAI---SYSS 64
Query: 89 RKWYFGGTQQSPN-LWVNEDGTNLNELDAAFLPEPADNVQRDYLAYSFSQSLKRWGFERV 147
++ G ++++P+ W+ EDG+ L + AY ++R
Sbjct: 65 FPFWMGLSRRNPSYPWLWEDGSPLMPHLFRVRGAVSQTYPSGTCAY-----IQRGAVYAE 119
Query: 148 TGMEPLLFICE 158
+ IC+
Sbjct: 120 NCILAAFSICQ 130
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 65.8 bits (161), Expect = 2e-13
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 687 GDKVRLECVAFGYPVPSY-NWTRRGSPLPRNA----YFENFNRILTIPNVKVEDQGEYIC 741
G V+ C Y + W L + +E+ IL + ++ D G Y C
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRC 75
Query: 742 RASNDRSALESSVTISIQA 760
+ ND S + ++
Sbjct: 76 KVVNDYGEDSSYAELFVKG 94
Score = 53.9 bits (130), Expect = 3e-09
Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 17/101 (16%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-EWFKEDYVQDRLVANLIDPLS 247
G Q V + + C Y + W+ ++
Sbjct: 1 GAMVSGQIMHAVGEEGG-----HVKYVCKIENYDQSTQVTWYFGV--------RQLENSE 47
Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 286
T G L + D + D G+Y CK N +G S
Sbjct: 48 KYEITYEDGVAILYVKDITK-LDDGTYRCKVVNDYGEDSSY 87
Score = 53.9 bits (130), Expect = 3e-09
Identities = 18/101 (17%), Positives = 28/101 (27%), Gaps = 17/101 (16%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-EWFKEDYVQDRLVANLIDPLS 520
G Q V + + C Y + W+ ++
Sbjct: 1 GAMVSGQIMHAVGEEGG-----HVKYVCKIENYDQSTQVTWYFGV--------RQLENSE 47
Query: 521 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGSIISE 559
T G L + D + D G+Y CK N +G S
Sbjct: 48 KYEITYEDGVAILYVKDITK-LDDGTYRCKVVNDYGEDSSY 87
Score = 35.8 bits (83), Expect = 0.007
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 414 GDKVRLECVAFGYPVPSY-NWTRRGSPLPRNA----YFENFNRILTIPNV 458
G V+ C Y + W L + +E+ IL + ++
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDI 65
>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural
killer cell receptor, lectin, C-type lectin, immune
system; 2.27A {Homo sapiens} SCOP: d.169.1.1
Length = 199
Score = 68.8 bits (168), Expect = 2e-13
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 14/114 (12%)
Query: 3 LISSCLFIFVSFHSVFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD 62
+ S FS D C + WV Y+ CY ++ A+ C
Sbjct: 59 IALSVGQYNCPGQYTFSMPSDSHVSSCSEDWVGYQRKCYFISTVK-RSWTSAQNACSEHG 117
Query: 63 SDLANVNDADEHGFIMYQL----FWQDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
+ LA ++ + F+ W G ++ + W +G N
Sbjct: 118 ATLAVIDSEKDMNFLKRYAGREEHW---------VGLKKEPGHPWKWSNGKEFN 162
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 65.8 bits (161), Expect = 2e-13
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYIC 741
G G P P W + G + R+ E+ L I +V ED +
Sbjct: 20 GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMV 79
Query: 742 RASNDRSALESSVTISIQAE 761
+A N S + +QA+
Sbjct: 80 KAINIAGETSSHAFLLVQAK 99
Score = 63.1 bits (154), Expect = 2e-12
Identities = 22/104 (21%), Positives = 29/104 (27%), Gaps = 17/104 (16%)
Query: 459 KMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 518
M P ++ D G P+P EW+K I+
Sbjct: 2 SMEAPKIFERIQSQTVGQGS-----DAHFRVRVVGKPDPECEWYKNG--------VKIER 48
Query: 519 LSDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 559
+ N L+I D ED S KA N G S
Sbjct: 49 SDRIYWYWPEDNVCELVIRDV-TGEDSASIMVKAINIAGETSSH 91
Score = 62.3 bits (152), Expect = 4e-12
Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 17/100 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ D G P+P EW+K I+
Sbjct: 6 PKIFERIQSQTVGQGS-----DAHFRVRVVGKPDPECEWYKNG--------VKIERSDRI 52
Query: 250 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISE 286
+ N L+I D ED S KA N G S
Sbjct: 53 YWYWPEDNVCELVIRDV-TGEDSASIMVKAINIAGETSSH 91
Score = 37.3 bits (87), Expect = 0.002
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----ENFNRILTIPNVKM 460
G G P P W + G + R+ E+ L I +V
Sbjct: 20 GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG 71
Score = 36.9 bits (86), Expect = 0.003
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 757 SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 801
S++A P + + + +D + G PD W++NG
Sbjct: 2 SMEA-PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVK 45
>2xr6_A CD209 antigen; sugar binding protein, carbohydrate binding,
mannose; HET: MAN 07B; 1.35A {Homo sapiens} PDB: 1sl4_A*
2it6_A* 1k9i_A* 2xr5_A* 1sl5_A* 2it5_A* 1xph_A 1k9j_A*
Length = 170
Score = 67.9 bits (166), Expect = 2e-13
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W ++ +CY S + +D+ CK + + L + A+E F+ Q R
Sbjct: 22 CPWEWTFFQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSS--RSNR 78
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLNE 113
W G + W DG+ L
Sbjct: 79 FTW-MGLSDLNQEGTWQWVDGSPLLP 103
>3hup_A Early activation antigen CD69; C-type lectin-like domain, disulfide
bond, glycoprotein, LEC membrane, phosphoprotein,
signal-anchor, transmembrane; 1.37A {Homo sapiens} PDB:
1e87_A 1e8i_A 3cck_A
Length = 130
Score = 66.7 bits (163), Expect = 3e-13
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ 87
C + WV Y+ CY ++ A+ C + LA ++ + F+ +
Sbjct: 15 SCSEDWVGYQRKCYFISTVK-RSWTSAQNACSEHGATLAVIDSEKDMNFLKRYA----GR 69
Query: 88 RRKWYFGGTQQSPNLWVNEDGTNLN 112
W G ++ + W +G N
Sbjct: 70 EEHW-VGLKKEPGHPWKWSNGKEFN 93
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 67.9 bits (166), Expect = 3e-13
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W ++ +CY S + +D+ CK + + L + A+E F+ Q
Sbjct: 27 CPWEWTFFQGNCYFMSNSQ-RNWHDSITACKEVGAQLVVIKSAEEQNFLQLQS---SRSN 82
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLNE 113
R + G + W DG+ L
Sbjct: 83 RFTWMGLSDLNQEGTWQWVDGSPLLP 108
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 65.5 bits (160), Expect = 3e-13
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYI 740
G V C G P P W + G + + + L ++D G Y
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 82
Query: 741 CRASNDRSALESSVTISIQAEPN 763
A+N + + + + +QA +
Sbjct: 83 IMAANPQGRISCTGRLMVQAVNS 105
Score = 58.1 bits (141), Expect = 1e-10
Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 18/104 (17%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
P+F + +T +C G P P WFK+ I P
Sbjct: 6 SGAPFFEMKLKHYKIFEGM-----PVTFTCRVAGNPKPKIYWFKDG--------KQISPK 52
Query: 247 SDKRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 286
SD + L ++D G+Y A+N G I
Sbjct: 53 SDHYTIQRDLDGTCSLHTTAS-TLDDDGNYTIMAANPQGRISCT 95
Score = 57.7 bits (140), Expect = 2e-10
Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 18/101 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P+F + +T +C G P P WFK+ I P SD
Sbjct: 9 PFFEMKLKHYKIFEGM-----PVTFTCRVAGNPKPKIYWFKDG--------KQISPKSDH 55
Query: 523 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISE 559
+ L ++D G+Y A+N G I
Sbjct: 56 YTIQRDLDGTCSLHTTAS-TLDDDGNYTIMAANPQGRISCT 95
Score = 38.1 bits (89), Expect = 0.001
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
P F + L + +T+TC G P WF++G+
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGK 47
Score = 36.9 bits (86), Expect = 0.004
Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 6/51 (11%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNV 458
G V C G P P W + G + + + L
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAS 73
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 69.9 bits (170), Expect = 3e-13
Identities = 42/291 (14%), Positives = 72/291 (24%), Gaps = 36/291 (12%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
+ ++C PL K L G N + + V++
Sbjct: 17 VLVTCSTSCDQPKLLGIE--------------TPLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 545 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP--GVNYY 602
C ++ G +++ + L P + C P +
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122
Query: 603 WARD----YFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFP 658
R V E V N+SC + D G
Sbjct: 123 LLRGEKELKREPAVGEPAEVT------TTVLVRRDHHGANFSCRTEL---DLRPQGLELF 173
Query: 659 LKVFPHSNFQQLKFPNNFPK-TFPEAPKAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRN 716
Q P P+ P + + + C G +PV N
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN 233
Query: 717 AYFENFNRILTIP---NVKVEDQG--EYICRASNDRSALESSVTISIQAEP 762
N + +V ED+G C + E+ T++I + P
Sbjct: 234 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284
Score = 61.4 bits (148), Expect = 3e-10
Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 9/132 (6%)
Query: 681 PEAP--KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE 738
P G V + C PLP+ N V++ +
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIET---PLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 739 YICRASNDRSALESSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGV---PDVTYS 794
+C ++ + +++ P + +LT C+ G ++T
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122
Query: 795 WFRNGELGHQMT 806
R + +
Sbjct: 123 LLRGEKELKREP 134
Score = 51.8 bits (123), Expect = 3e-07
Identities = 27/183 (14%), Positives = 43/183 (23%), Gaps = 28/183 (15%)
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-PEAPKAGDKVRLE 693
+ C G++ L V+ P P G + L
Sbjct: 59 EDSQPMCYSNC---PDGQSTAKTFLTVYW--------TPERVELAPLPSWQPVGKNLTLR 107
Query: 694 C-VAFGYPVP--SYNWTRRGSPLPRNAYF-ENFNRILTIPNVKVEDQGEYICRASNDRSA 749
C V G P + R L R E T+ + + CR D
Sbjct: 108 CQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRP 167
Query: 750 LESSVTISIQAEPNFTI---PLTDKHMDNQADL------TWTCEAFGVP---DVTYSWFR 797
+ + A P T + + L T C G+ +
Sbjct: 168 QGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL 227
Query: 798 NGE 800
+
Sbjct: 228 GDQ 230
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 68.5 bits (167), Expect = 4e-13
Identities = 26/181 (14%), Positives = 48/181 (26%), Gaps = 26/181 (14%)
Query: 601 YYWARDYFPNFVEEDK-RVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRN 653
+ + + R + D AL + ++ DAG Y C + +D R
Sbjct: 50 FVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKR- 108
Query: 654 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL 713
+KV + + P + L C A GYP WT +
Sbjct: 109 ---ITVKV-------NAPYNKINQRILVVDPV-TSEHELTCQAEGYPKAEVIWTSSDHQV 157
Query: 714 PRNAYFENFNR-------ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI 766
++ + + + + C + + I P
Sbjct: 158 LSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHP 217
Query: 767 P 767
P
Sbjct: 218 P 218
Score = 55.4 bits (133), Expect = 1e-08
Identities = 24/141 (17%), Positives = 38/141 (26%), Gaps = 28/141 (19%)
Query: 687 GDKVRLECVAFGYPVPS---YNWTRR-----------GSPLPRNAYFENFNRI------- 725
G + +EC G + + R
Sbjct: 16 GSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQL 75
Query: 726 ------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADL 779
L I +VK++D G Y C S A +T+ + A N ++
Sbjct: 76 SLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILVVDPVTSEH 134
Query: 780 TWTCEAFGVPDVTYSWFRNGE 800
TC+A G P W +
Sbjct: 135 ELTCQAEGYPKAEVIWTSSDH 155
Score = 45.8 bits (108), Expect = 2e-05
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 210 NDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
++ L+C A GYP W D + + +K F ++ L IN
Sbjct: 132 SEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKR-EEKLFNVT-STLRINT----T 185
Query: 268 DRGSYHCKASNKFGSIISESV 288
++C +
Sbjct: 186 TNEIFYCTFRRLDPEENHTAE 206
Score = 45.8 bits (108), Expect = 2e-05
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 483 NDITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
++ L+C A GYP W D + + +K F ++ L IN
Sbjct: 132 SEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKR-EEKLFNVT-STLRINT----T 185
Query: 541 DRGSYHCKASNKFGSIISESV 561
++C +
Sbjct: 186 TNEIFYCTFRRLDPEENHTAE 206
Score = 45.4 bits (107), Expect = 2e-05
Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 25/185 (13%)
Query: 211 DITLSCYAGGYPNPSY-----EWFKED-----YVQDRLVANLIDPLSDKRFTLSG----- 255
++T+ C W ED +V + +R L
Sbjct: 18 NMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSL 77
Query: 256 GN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 313
GN L I D +++D G Y C S G + + + +R +
Sbjct: 78 GNAALQITDV-KLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEH 134
Query: 314 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY--FSAL--EQIDAGNYSCN 369
+ C YP W + + L+ S L + C
Sbjct: 135 ELTCQ-AEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCT 193
Query: 370 VQSKV 374
+
Sbjct: 194 FRRLD 198
Score = 45.4 bits (107), Expect = 2e-05
Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 25/185 (13%)
Query: 484 DITLSCYAGGYPNPSY-----EWFKED-----YVQDRLVANLIDPLSDKRFTLSG----- 528
++T+ C W ED +V + +R L
Sbjct: 18 NMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSL 77
Query: 529 GN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 586
GN L I D +++D G Y C S G + + + +R +
Sbjct: 78 GNAALQITDV-KLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEH 134
Query: 587 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY--FSAL--EQIDAGNYSCN 642
+ C YP W + + L+ S L + C
Sbjct: 135 ELTCQ-AEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCT 193
Query: 643 VQSKV 647
+
Sbjct: 194 FRRLD 198
Score = 45.0 bits (106), Expect = 3e-05
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 19/120 (15%)
Query: 328 YYWARDYFPNFVEEDK-RVFVSYDG------ALYFSALEQIDAGNYSCNVQSKVSDTGRN 380
+ + + R + D AL + ++ DAG Y C + +D R
Sbjct: 50 FVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKR- 108
Query: 381 GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPL 440
+KV + + P + L C A GYP WT +
Sbjct: 109 ---ITVKV-------NAPYNKINQRILVVDPV-TSEHELTCQAEGYPKAEVIWTSSDHQV 157
>3rs1_A C-type lectin domain family 2 member I; C-type lectin-like, ligand
of NK receptor, natural killer CE receptors, surface of
activated T lymphocytes; 1.94A {Mus musculus}
Length = 122
Score = 65.5 bits (160), Expect = 4e-13
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FWQ 84
C ++W + C+ F P + A+ C + ++ LA ++ +E F+ W
Sbjct: 8 CSKNWTGVGNKCFYFSGYP-RNWTFAQAFCMAQEAQLARFDNEEELIFLKRFKGDFDSW- 65
Query: 85 DPQRRKWYFGGT-QQSPNLWVNEDGTNLNEL 114
G + S + W + T N +
Sbjct: 66 --------IGLHRESSEHPWKWTNNTEYNNM 88
>2bpd_A Dectin-1; receptor, beta-glucan, fungal recognition, C-type
lectin-like domain, CTLD, carbohydrate; 1.5A {Mus
musculus} PDB: 2bph_A 2bpe_A 2cl8_A*
Length = 142
Score = 66.3 bits (162), Expect = 4e-13
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C +W+ + SCY F S + +K +C L + L ++++ E FI Q +
Sbjct: 17 CLPNWIMHGKSCYLFSFSG-NSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQT--SSHRI 73
Query: 89 RKWYFGGTQQSPN-LWVNEDGTNLN 112
++ G ++ W EDG+
Sbjct: 74 NAFWIGLSRNQSEGPWFWEDGSAFF 98
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 67.3 bits (164), Expect = 5e-13
Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 18/146 (12%)
Query: 615 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN 674
KR+ + +L S L+ D G+Y + +K S + + L++ Q+ +
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSS---YTLRILRQLRNIQVTNHS 117
Query: 675 NFPKTFPEAPKAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKV 733
+ ++ L C V S+ W G+ L + + ++
Sbjct: 118 QLFQN------MTCELHLTCSVEDADDNVSFRWEALGNTLSSQ------PNLTVSWDPRI 165
Query: 734 EDQGEYICRASNDRSALESSVTISIQ 759
+ +Y C A N S S ++S Q
Sbjct: 166 SSEQDYTCIAENAVS--NLSFSVSAQ 189
Score = 55.0 bits (132), Expect = 1e-08
Identities = 33/147 (22%), Positives = 50/147 (34%), Gaps = 23/147 (15%)
Query: 687 GDKVRLEC-VAFGYPVPSYNWTRRGSPL-----------------PRNAYFENF--NRIL 726
G+ V L G V W + L P+ NF + L
Sbjct: 13 GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72
Query: 727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQAE-PNFTIPLTDKHMDNQAD-LTWTCE 784
+ N+K+ED G Y + S SA SS T+ I + N + + N L TC
Sbjct: 73 QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCS 132
Query: 785 AF-GVPDVTYSWFRNGELGHQMTDLLL 810
+V++ W G +L +
Sbjct: 133 VEDADDNVSFRWEALGNTLSSQPNLTV 159
Score = 53.8 bits (129), Expect = 3e-08
Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 211 DITLSC-YAGGYPNPSYEWFKEDYVQDRLVA--------NLIDPLSDKRFTLSG-GNLII 260
+TL + G W + +V ++ +P KR + +L +
Sbjct: 15 SVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL 74
Query: 261 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CDP 319
++ + +ED GSY + S K + +S + + ++ + C
Sbjct: 75 SNLK-MEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSV 133
Query: 320 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
V++ W N + + VS+D + +Y+C ++ VS
Sbjct: 134 EDADDNVSFRWEAL--GNTLSSQPNLTVSWDPRIS-------SEQDYTCIAENAVS 180
Score = 53.8 bits (129), Expect = 3e-08
Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 484 DITLSC-YAGGYPNPSYEWFKEDYVQDRLVA--------NLIDPLSDKRFTLSG-GNLII 533
+TL + G W + +V ++ +P KR + +L +
Sbjct: 15 SVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL 74
Query: 534 NDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CDP 592
++ + +ED GSY + S K + +S + + ++ + C
Sbjct: 75 SNLK-MEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSV 133
Query: 593 PTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 648
V++ W N + + VS+D + +Y+C ++ VS
Sbjct: 134 EDADDNVSFRWEAL--GNTLSSQPNLTVSWDPRIS-------SEQDYTCIAENAVS 180
Score = 45.0 bits (106), Expect = 3e-05
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 342 DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPN 401
KR+ + +L S L+ D G+Y + +K S + + L++ Q+ +
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSS---YTLRILRQLRNIQVTNHS 117
Query: 402 NFPKTFPEAPKAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRN 443
+ ++ L C V S+ W G+ L
Sbjct: 118 QLFQN------MTCELHLTCSVEDADDNVSFRWEALGNTLSSQ 154
Score = 45.0 bits (106), Expect = 3e-05
Identities = 36/195 (18%), Positives = 55/195 (28%), Gaps = 64/195 (32%)
Query: 414 GDKVRLEC-VAFGYPVPSYNWTRRGSPL-----------------PRNAYFENF--NRIL 453
G+ V L G V W + L P+ NF + L
Sbjct: 13 GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72
Query: 454 TIPNVKMR--GPY------------------FIKQPTDVVFDLSKRSILN---DITLSCY 490
+ N+KM G Y ++Q ++ + N ++ L+C
Sbjct: 73 QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCS 132
Query: 491 A-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL-IINDPRQVEDRGSYHCK 548
N S+ W S NL + DPR + Y C
Sbjct: 133 VEDADDNVSFRWEA-----------------LGNTLSSQPNLTVSWDPR-ISSEQDYTCI 174
Query: 549 ASNKFGSIISESVQL 563
A N + +S SV
Sbjct: 175 AENAVSN-LSFSVSA 188
Score = 41.1 bits (96), Expect = 5e-04
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 21/82 (25%)
Query: 211 DITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNL-IINDPRQVED 268
++ L+C N S+ W S NL + DPR +
Sbjct: 126 ELHLTCSVEDADDNVSFRWEA-----------------LGNTLSSQPNLTVSWDPR-ISS 167
Query: 269 RGSYHCKASNKFGSIISESVQL 290
Y C A N + +S SV
Sbjct: 168 EQDYTCIAENAVSN-LSFSVSA 188
>2zib_A Type II antifreeze protein; thermal hysteresis, lectin; 1.34A
{Brachyopsis rostratus}
Length = 133
Score = 65.5 bits (160), Expect = 7e-13
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI---MYQLFW 83
L CP W + C+ + T + A+ NC + LA+++ +E +I + + W
Sbjct: 8 LVCPAGWTLHGQRCFYSEATA-MTWDLAEANCVNKGGHLASIHSLEEQLYIKDIVAGIVW 66
Query: 84 QDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
GG+ + W DGT ++
Sbjct: 67 ---------IGGSACKVAGAWSWTDGTPVD 87
>2py2_A Antifreeze protein type II; type II antifreeze protein; 1.70A
{Clupea harengus}
Length = 136
Score = 65.4 bits (160), Expect = 7e-13
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W + C+ F DA+ +C ++LA+++ +E F+
Sbjct: 4 CPTDWKMFNGRCFLFNPLQ-LHWADAQESCMKEGANLASIHSLEESTFVKELT---SADL 59
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
+ GGT Q W D T+++
Sbjct: 60 IPSWIGGTDCQVSTRWFWMDSTSMD 84
>2ls8_A C-type lectin domain family 4 member D; structural genomics, NEW
YORK structural genomics research consortium, nysgrc,
PSI-biology, immune system; NMR {Homo sapiens}
Length = 156
Score = 65.5 bits (160), Expect = 1e-12
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W ++ +CY + KT +++ NC + + L ++ E FI+ L +R
Sbjct: 3 CPIDWRAFQSNCYFPLTDN-KTWAESERNCSGMGAHLMTISTEAEQNFIIQFL----DRR 57
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
++ G + + W D T N
Sbjct: 58 LSYFLGLRDENAKGQWRWVDQTPFN 82
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 64.0 bits (156), Expect = 1e-12
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
++V L C W + G + + + L +P KV+D GE+
Sbjct: 23 TTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFE 81
Query: 741 CRASNDRSALESSVT 755
CR + +V
Sbjct: 82 CRTEGVSAFFGVTVQ 96
Score = 39.3 bits (92), Expect = 5e-04
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 16/97 (16%)
Query: 189 GPYFIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
GP I P D V S ++ + L+C + W+K+ ++
Sbjct: 7 GPVHILSPQDKV---SLTFTTSERVVLTCELSR-VDFPATWYKDG--------QKVEESE 54
Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
+ G LI+ + +V+D G + C+
Sbjct: 55 LLVVKMDGRKHRLILPEA-KVQDSGEFECRTEGVSAF 90
Score = 39.3 bits (92), Expect = 5e-04
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 16/97 (16%)
Query: 462 GPYFIKQPTDVVFDLSKRSILND-ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 520
GP I P D V S ++ + L+C + W+K+ ++
Sbjct: 7 GPVHILSPQDKV---SLTFTTSERVVLTCELSR-VDFPATWYKDG--------QKVEESE 54
Query: 521 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
+ G LI+ + +V+D G + C+
Sbjct: 55 LLVVKMDGRKHRLILPEA-KVQDSGEFECRTEGVSAF 90
Score = 37.8 bits (88), Expect = 0.002
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKMR--GPY 464
++V L C W + G + + + L +P K++ G +
Sbjct: 23 TTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEF 80
Score = 28.5 bits (64), Expect = 3.0
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 322 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVS 375
+ W +D VEE + + V DG L + D+G + C + +
Sbjct: 35 SRVDFPATWYKDGQK--VEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA 89
Score = 28.5 bits (64), Expect = 3.0
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 595 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVS 648
+ W +D VEE + + V DG L + D+G + C + +
Sbjct: 35 SRVDFPATWYKDGQK--VEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA 89
>3m9z_A Killer cell lectin-like receptor subfamily B MEMB; C-type
lectin-like domain, domain swapping, disulfide bond,
transmembrane protein; 1.70A {Mus musculus} PDB: 3t3a_A
Length = 139
Score = 64.8 bits (158), Expect = 1e-12
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
L CPQ W+ +RD C+ + T + ++C + L + D +E F++ +
Sbjct: 4 LECPQDWLSHRDKCFHVSQVS-NTWEEGLVDCDGKGATLMLIQDQEELRFLLDSI---KE 59
Query: 87 QRRKWYFGGTQQSPN-LWVNEDGTNLN 112
+ ++ G P+ W +G+ LN
Sbjct: 60 KYNSFWIGLRYTLPDMNWKWINGSTLN 86
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 63.5 bits (155), Expect = 1e-12
Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
G L+C V W + L + + L I ++ V D GEY C
Sbjct: 23 GATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCM 80
Query: 743 ASNDRSALESSVTISIQAEPN-FTIPLTDK 771
+R +S T++++A P FT
Sbjct: 81 CGQER----TSATLTVRALPARFTEGSGPS 106
Score = 40.1 bits (94), Expect = 3e-04
Identities = 17/95 (17%), Positives = 21/95 (22%), Gaps = 18/95 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + TL C EW K +
Sbjct: 9 ARFTQDLKTKEASEGA-----TATLQCELS--KVAPVEWKKGP--------ETLRDGGRY 53
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
G L I+D V D G Y C + S
Sbjct: 54 SLKQDGTRCELQIHDL-SVADAGEYSCMCGQERTS 87
Score = 40.1 bits (94), Expect = 3e-04
Identities = 17/95 (17%), Positives = 21/95 (22%), Gaps = 18/95 (18%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
F + TL C EW K +
Sbjct: 9 ARFTQDLKTKEASEGA-----TATLQCELS--KVAPVEWKKGP--------ETLRDGGRY 53
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
G L I+D V D G Y C + S
Sbjct: 54 SLKQDGTRCELQIHDL-SVADAGEYSCMCGQERTS 87
Score = 35.4 bits (82), Expect = 0.012
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM 460
G L+C V W + L + + L I ++ +
Sbjct: 23 GATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSV 71
Score = 35.0 bits (81), Expect = 0.018
Identities = 12/39 (30%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
FT L K A T CE V V W + E
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELSKVAPVE--WKKGPE 45
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 63.6 bits (155), Expect = 1e-12
Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 17/98 (17%)
Query: 677 PKTFPEAPKA--------GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNR 724
F + A G L C W + G L ++ R
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTR 66
Query: 725 ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
L + + GEY C A + S + + +
Sbjct: 67 RLVVQQAGQAEAGEYSCEAGGQ----QLSFRLQVAGQC 100
Score = 40.5 bits (95), Expect = 2e-04
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVED 268
TLSC W+K+ + S R G L++ +
Sbjct: 28 SATLSCEVAQ-AQTEVTWYKDG--------KKLSSSSKVRVEAVGCTRRLVVQQA-GQAE 77
Query: 269 RGSYHCKASNKFGS 282
G Y C+A + S
Sbjct: 78 AGEYSCEAGGQQLS 91
Score = 40.5 bits (95), Expect = 2e-04
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVED 541
TLSC W+K+ + S R G L++ +
Sbjct: 28 SATLSCEVAQ-AQTEVTWYKDG--------KKLSSSSKVRVEAVGCTRRLVVQQA-GQAE 77
Query: 542 RGSYHCKASNKFGS 555
G Y C+A + S
Sbjct: 78 AGEYSCEAGGQQLS 91
Score = 30.8 bits (70), Expect = 0.41
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVS 375
W +D + +V V G L Q +AG YSC +
Sbjct: 38 AQTEVTWYKDGKK--LSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQL 90
Score = 30.8 bits (70), Expect = 0.41
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVS 648
W +D + +V V G L Q +AG YSC +
Sbjct: 38 AQTEVTWYKDGKK--LSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQL 90
>2c6u_A CLEC1B protein; lectin, rhodocytin, aggretin, C-type lectin-like,
platelets, thrombosis; 1.6A {Homo sapiens}
Length = 122
Score = 64.0 bits (156), Expect = 2e-12
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL---FW-- 83
C +W Y DSCY F + T ++K C +++ L +++ + +I + W
Sbjct: 3 CDTNWRYYGDSCYGFFRHN-LTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVG 61
Query: 84 --QDPQRRKWYF-GGTQQSPNLWVNEDGTNLNE 113
+ W + G+ S N++ + N
Sbjct: 62 LSRQKSNEVWKWEDGSVISENMFEFLEDGKGNM 94
>2afp_A Protein (SEA raven type II antifreeze protein); recombinant SEA
raven protein, solution backbone fold, C- type lectin;
NMR {Hemitripterus americanus} SCOP: d.169.1.1
Length = 129
Score = 64.3 bits (157), Expect = 2e-12
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFI---MYQLFWQ 84
CP W D C + + T A+ NC L LA+++ +EH FI + W
Sbjct: 6 NCPAGWQPLGDRCIYYETTA-MTWALAETNCMKLGGHLASIHSQEEHSFIQTLNAGVVW- 63
Query: 85 DPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
GG+ W DGT +N
Sbjct: 64 --------IGGSACLQAGAWTWSDGTPMN 84
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 63.5 bits (155), Expect = 2e-12
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
G+ V L C P +W + + ++ + E +L I ++D GEY C
Sbjct: 23 GEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCE 81
Query: 743 ASNDRSALESSVTISIQAEPN 763
+ S+ ++ ++ + +
Sbjct: 82 VEASK----STASLHVEEKAS 98
Score = 46.1 bits (110), Expect = 2e-06
Identities = 16/95 (16%), Positives = 24/95 (25%), Gaps = 17/95 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
IK D + + L C P W K+ I
Sbjct: 9 AAIIKPLEDQWVAPGED-----VELRCELSRAGTP-VHWLKDR--------KAIRKSQKY 54
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
G L+I ++D G Y C+ +
Sbjct: 55 DVVCEGTMAMLVIRGA-SLKDAGEYTCEVEASKST 88
Score = 46.1 bits (110), Expect = 2e-06
Identities = 16/95 (16%), Positives = 24/95 (25%), Gaps = 17/95 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
IK D + + L C P W K+ I
Sbjct: 9 AAIIKPLEDQWVAPGED-----VELRCELSRAGTP-VHWLKDR--------KAIRKSQKY 54
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
G L+I ++D G Y C+ +
Sbjct: 55 DVVCEGTMAMLVIRGA-SLKDAGEYTCEVEASKST 88
Score = 36.5 bits (85), Expect = 0.004
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM 460
G+ V L C P +W + + ++ + E +L I +
Sbjct: 23 GEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASL 72
Score = 33.4 bits (77), Expect = 0.057
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
PL D+ + D+ CE W ++ +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRK 46
>3bdw_B NKG2-A/NKG2-B type II integral membrane protein; NK cells,
receptor, glycoprotein, lectin, signal-A transmembrane,
immune system receptor; 2.50A {Homo sapiens} PDB: 3cdg_K
3cii_H
Length = 120
Score = 64.0 bits (156), Expect = 2e-12
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL--FWQD 85
CP+ W+ Y +SCY K +T ++ L C S +S L ++++ +E F+ W
Sbjct: 6 HCPEEWITYSNSCYYIGKER-RTWEESLLACTSKNSSLLSIDNEEEMKFLSIISPSSW-- 62
Query: 86 PQRRKWYFGGTQQSPN-LWVNEDGTNLN 112
G + S + WV +G
Sbjct: 63 -------IGVFRNSSHHPWVTMNGLAFK 83
>2vuv_A Codakine; sugar-binding protein, C-type, lectin, mannose,
invertebrate; HET: CIT; 1.3A {Codakia orbicularis} PDB:
2vuz_A*
Length = 129
Score = 63.9 bits (156), Expect = 2e-12
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W Q+ D CY + + + A+ +C++L LA + A E+ +++
Sbjct: 2 CPDGWTQFLDLCYIYQSAK-ASWASAQSSCQALGGILAEPDTACENEVLIHMCKENGDAG 60
Query: 89 RKWYFGGTQQSPNLWVNEDGTNL 111
+ G Q+ W
Sbjct: 61 SFGPWLGGQKVGGAWQWSSSGAA 83
>3bdw_A Natural killer cells antigen CD94; NK cells, receptor,
glycoprotein, lectin, signal-A transmembrane, immune
system receptor; 2.50A {Homo sapiens} SCOP: d.169.1.1
PDB: 3cdg_J 1b6e_A 3cii_G
Length = 123
Score = 63.6 bits (155), Expect = 2e-12
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 19/90 (21%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIM--YQLFW--- 83
C + WV YR +CY KT N+++ C S S L + + DE F+ Q +W
Sbjct: 5 CQEKWVGYRCNCYFISSEQ-KTWNESRHLCASQKSSLLQLQNTDELDFMSSSQQFYWIGL 63
Query: 84 -QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
+ W LW +G+ L+
Sbjct: 64 SYSEEHTAW----------LWE--NGSALS 81
>3ff7_C Killer cell lectin-like receptor subfamily G member 1;
KLRG1-cadherin complex, calcium, cell adhesion, cell
junction, cell membrane; 1.80A {Homo sapiens}
Length = 112
Score = 63.2 bits (154), Expect = 2e-12
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP W++Y + CY F K N + C + DS L + D E + L
Sbjct: 1 CPDRWMKYGNHCYYFSVEE-KDWNSSLEFCLARDSHLLVITDNQEMSLLQVFL-----SE 54
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLN 112
+ G S W DG+ LN
Sbjct: 55 AFSWIGLRNNSGWRWE--DGSPLN 76
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 62.8 bits (153), Expect = 2e-12
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 685 KAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEY 739
G+ EC ++ WT G + ++ F + IL + D GE
Sbjct: 21 LEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEV 80
Query: 740 ICRASNDRSALESSVTISIQAEP 762
+ S ++ ++
Sbjct: 81 VFSVRGLT----SKASLIVRERS 99
Score = 40.5 bits (95), Expect = 2e-04
Identities = 9/99 (9%), Positives = 20/99 (20%), Gaps = 17/99 (17%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDP 245
K+ + + + C + + W +
Sbjct: 6 SGHVGITKRLKTMEVLEGE-----SCSFECVLSHESASDPAMWTVGG--------KTVGS 52
Query: 246 LSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
S + T G L++ + D G
Sbjct: 53 SSRFQATRQGRKYILVVREA-APSDAGEVVFSVRGLTSK 90
Score = 39.7 bits (93), Expect = 4e-04
Identities = 9/96 (9%), Positives = 20/96 (20%), Gaps = 17/96 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCY-AGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
K+ + + + C + + W + S
Sbjct: 9 VGITKRLKTMEVLEGE-----SCSFECVLSHESASDPAMWTVGG--------KTVGSSSR 55
Query: 522 KRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
+ T G L++ + D G
Sbjct: 56 FQATRQGRKYILVVREA-APSDAGEVVFSVRGLTSK 90
Score = 39.7 bits (93), Expect = 4e-04
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 412 KAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM 460
G+ EC ++ WT G + ++ F + IL +
Sbjct: 21 LEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAP 74
Score = 30.4 bits (69), Expect = 0.60
Identities = 12/67 (17%), Positives = 15/67 (22%), Gaps = 6/67 (8%)
Query: 313 KAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSC 368
F C W V R + G L DAG
Sbjct: 25 SCSFECVLSHESASDPAMWTVGGKT--VGSSSRFQATRQGRKYILVVREAAPSDAGEVVF 82
Query: 369 NVQSKVS 375
+V+ S
Sbjct: 83 SVRGLTS 89
Score = 30.4 bits (69), Expect = 0.60
Identities = 12/67 (17%), Positives = 15/67 (22%), Gaps = 6/67 (8%)
Query: 586 KAMF-CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSC 641
F C W V R + G L DAG
Sbjct: 25 SCSFECVLSHESASDPAMWTVGGKT--VGSSSRFQATRQGRKYILVVREAAPSDAGEVVF 82
Query: 642 NVQSKVS 648
+V+ S
Sbjct: 83 SVRGLTS 89
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and
CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Length = 182
Score = 65.2 bits (159), Expect = 2e-12
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
Q W ++ + Y F P KT A+ C S +S L +V E F+ ++
Sbjct: 49 VSQGWKYFKGNFYYFSLIP-KTWYSAEQFCVSRNSHLTSVTSESEQEFL-----YKTAGG 102
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
++ G T W D T N
Sbjct: 103 LIYWIGLTKAGMEGDWSWVDDTPFN 127
>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A {Homo
sapiens}
Length = 118
Score = 63.2 bits (154), Expect = 3e-12
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP+ W Y+ C+ S + N+++ CK S LA VN ++ F+
Sbjct: 2 CPKDWEFYQARCFFLSTSE-SSWNESRDFCKGKGSTLAIVNTPEKLKFLQDIT-----DA 55
Query: 89 RKWYFGGTQQSPN-LWVNEDGTNLN 112
K++ G W + + N
Sbjct: 56 EKYFIGLIYHREEKRWRWINNSVFN 80
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 65.7 bits (159), Expect = 3e-12
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 5/121 (4%)
Query: 685 KAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRA 743
G +L C S W + L + +LT+ N + G +C
Sbjct: 20 ALGASRQLTCRLACADRGASVQWRGLDTSLGAV-QSDTGRSVLTVRNASLSAAGTRVCVG 78
Query: 744 SNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPD---VTYSWFRNGE 800
S + +V + + A PN + ++ T D +++S G+
Sbjct: 79 SCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQ 138
Query: 801 L 801
Sbjct: 139 E 139
Score = 41.0 bits (95), Expect = 6e-04
Identities = 19/171 (11%), Positives = 43/171 (25%), Gaps = 33/171 (19%)
Query: 412 KAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPYF--- 465
G +L C S W + L + +LT+ N + G
Sbjct: 20 ALGASRQLTCRLACADRGASVQWRGLDTSLGAV-QSDTGRSVLTVRNASLSAAGTRVCVG 78
Query: 466 --------------IKQPTDVVFDLSKRSILNDITLSCYA-GGYP----NPSYEWFKEDY 506
+ + + + D ++C A P S+
Sbjct: 79 SCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLVGGQ 138
Query: 507 VQDRLVANLIDPLSDKRFTLSGGNLIIN-------DPRQVEDRGSYHCKAS 550
+ A + ++ +++ P + +C+A+
Sbjct: 139 ELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQAT 189
Score = 35.6 bits (81), Expect = 0.036
Identities = 20/139 (14%), Positives = 33/139 (23%), Gaps = 26/139 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
P ++ P VV S L+C S +W D L
Sbjct: 7 PLQVEPPEPVVAVALGASR----QLTCRLACADRGASVQWRGLD-----------TSLGA 51
Query: 249 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN 308
+ L + + G+ C S + +VQL + +
Sbjct: 52 VQSDTGRSVLTVR-NASLSAAGTRVCVGSCGGRT-FQHTVQLLV-----YAFPNQLTVSP 104
Query: 309 Q---NWGKAMFCDPPTNYP 324
+ C P
Sbjct: 105 AALVPGDPEVACTAHKVTP 123
Score = 35.6 bits (81), Expect = 0.036
Identities = 20/139 (14%), Positives = 33/139 (23%), Gaps = 26/139 (18%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
P ++ P VV S L+C S +W D L
Sbjct: 7 PLQVEPPEPVVAVALGASR----QLTCRLACADRGASVQWRGLD-----------TSLGA 51
Query: 522 KRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGN 581
+ L + + G+ C S + +VQL + +
Sbjct: 52 VQSDTGRSVLTVR-NASLSAAGTRVCVGSCGGRT-FQHTVQLLV-----YAFPNQLTVSP 104
Query: 582 Q---NWGKAMFCDPPTNYP 597
+ C P
Sbjct: 105 AALVPGDPEVACTAHKVTP 123
>3c22_A C-type lectin domain family 4 member K; coiled coil, glycoprotein,
membrane, signal-anchor, transmembrane, immune system,
sugar binding protein; 1.50A {Homo sapiens} PDB: 3p5g_A*
3p5d_A* 3p5f_A* 3p5e_A* 3p5h_A* 3p5i_A* 3p7g_A* 3p7f_A*
3p7h_A* 3bc7_A* 3bbs_A* 3bc6_A*
Length = 156
Score = 64.4 bits (157), Expect = 3e-12
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
Q W ++ + Y F P KT A+ C S +S L +V E F+ ++
Sbjct: 23 VSQGWKYFKGNFYYFSLIP-KTWYSAEQFCVSRNSHLTSVTSESEQEFL-----YKTAGG 76
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
++ G T W D T N
Sbjct: 77 LIYWIGLTKAGMEGDWSWVDDTPFN 101
>2ox9_A Collectin placenta 1; C-type lectin, sugar binding protein; HET:
GAL NAG FUC; 1.95A {Mus musculus} PDB: 2ox8_A
Length = 140
Score = 63.9 bits (156), Expect = 3e-12
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP HW + D CY F + DAKL C+ S L +N +E +I ++
Sbjct: 5 CPPHWKNFTDKCYYFSLEK-EIFEDAKLFCEDKSSHLVFINSREEQQWIKKHTVGRESH- 62
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
W G T + + W DG+ ++
Sbjct: 63 --W-IGLTDSEQESEWKWLDGSPVD 84
>3g8k_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.00A {Mus musculus} PDB:
1qo3_C 3cad_A
Length = 130
Score = 63.2 bits (154), Expect = 3e-12
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW- 83
++W Y CY FV KT + K C+ L +++ DE F+ + +W
Sbjct: 7 FEKYWFCYGIKCYYFVMDR-KTWSGCKQTCQISSLSLLKIDNEDELKFLKLLVPSDSYWI 65
Query: 84 ---QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
D +++ W W+ +
Sbjct: 66 GLSYDNKKKDW----------AWI--NNGPSK 85
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 65.6 bits (160), Expect = 4e-12
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 12/107 (11%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKVEDQGE 738
G++V + C F YP + +W R G LP + Y L + D G
Sbjct: 31 WEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGN 90
Query: 739 YICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQAD---LTWT 782
Y C A N + P+ + ++ + + +
Sbjct: 91 YNCTAVNRIGQESLEFILVQADTPS---SPSIDQVEPYSSTAQVQFD 134
Score = 55.2 bits (133), Expect = 1e-08
Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 19/122 (15%)
Query: 173 TYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKED 232
TY P ++ P V N + ++C YP+ + WF++
Sbjct: 2 TYAAASSALVPRGSHMYAPKLQGPVAVYTWEG-----NQVNITCEVFAYPSATISWFRDG 56
Query: 233 YVQDRLVANLIDPLSDKRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESV 288
L+ + + L + + D G+Y+C A N+ G S
Sbjct: 57 --------QLLPSSNYSNIKIYNTPSASYLEVTPDSE-NDFGNYNCTAVNRIGQ-ESLEF 106
Query: 289 QL 290
L
Sbjct: 107 IL 108
Score = 55.2 bits (133), Expect = 1e-08
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 19/103 (18%)
Query: 465 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRF 524
++ P V N + ++C YP+ + WF++ L+ +
Sbjct: 21 KLQGPVAVYTWEG-----NQVNITCEVFAYPSATISWFRDG--------QLLPSSNYSNI 67
Query: 525 TLSGGN----LIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ L + + D G+Y+C A N+ G S L
Sbjct: 68 KIYNTPSASYLEVTPDSE-NDFGNYNCTAVNRIGQ-ESLEFIL 108
Score = 40.2 bits (94), Expect = 0.001
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF------ENFNRILTIPNVKMR--GP 463
G++V + C F YP + +W R G LP + Y L + G
Sbjct: 31 WEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGN 90
Query: 464 YFIK 467
Y
Sbjct: 91 YNCT 94
Score = 32.5 bits (74), Expect = 0.38
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWF 796
Y +S S P P + + TCE F P T SWF
Sbjct: 1 ATYAAASSA------LVPRGSHMYAPKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWF 53
Query: 797 RNGEL 801
R+G+L
Sbjct: 54 RDGQL 58
>1hq8_A NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {Mus musculus}
SCOP: d.169.1.1 PDB: 1jsk_A 1kcg_A*
Length = 123
Score = 62.8 bits (153), Expect = 4e-12
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 19/91 (20%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL--FW-- 83
CP +W+ +R++CY+F KT N ++ +C S +S L + +E F+ W
Sbjct: 5 PCPNNWICHRNNCYQFFNEE-KTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSYHWMG 63
Query: 84 --QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
Q P W W DG++L+
Sbjct: 64 LVQIPANGSW----------QWE--DGSSLS 82
>3ff9_A Killer cell lectin-like receptor subfamily G member 1; natural
killer cell receptor KLTG1, glycoprotein, membrane,
phosphoprotein, signal-anchor; 1.80A {Mus musculus} PDB:
3ff8_C
Length = 115
Score = 62.4 bits (152), Expect = 4e-12
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL----FW- 83
CP W + CY F K N + C S L D L +W
Sbjct: 2 CPILWTRNGSHCYYFSMEK-KDWNSSLKFCADKGSHLLTFPDNQGVKLFGEYLGQDFYWI 60
Query: 84 --QDPQRRKWYFGGTQQSPNLWVNEDG 108
++ +W GG S + N
Sbjct: 61 GLRNIDGWRW-EGGPALSLRILTNSLI 86
>1mpu_A NKG2-D type II integral membrane protein; C-type lectin-like
domain, immune system; 2.50A {Homo sapiens} SCOP:
d.169.1.1 PDB: 1hyr_B
Length = 138
Score = 63.3 bits (154), Expect = 4e-12
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 19/91 (20%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL--FW-- 83
CP++W+ Y+++CY+F K +++ +C S ++ L V ++ + W
Sbjct: 20 PCPKNWICYKNNCYQFFDES-KNWYESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMG 78
Query: 84 --QDPQRRKWYFGGTQQSPNLWVNEDGTNLN 112
P W W DG+ L+
Sbjct: 79 LVHIPTNGSW----------QWE--DGSILS 97
>1dv8_A Asialoglycoprotein receptor 1; C-type lectin CRD, signaling
protein; 2.30A {Homo sapiens} SCOP: d.169.1.1
Length = 128
Score = 62.8 bits (153), Expect = 5e-12
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP +WV++ SCY F +S K DA C+ D+ L V +E F+ + +
Sbjct: 1 CPVNWVEHERSCYWFSRSG-KAWADADNYCRLEDAHLVVVTSWEEQKFVQHHI-----GP 54
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLN 112
+ G Q+ W DGT+
Sbjct: 55 VNTWMGLHDQN-GPWKWVDGTDYE 77
>2h2t_B Low affinity immunoglobulin epsilon FC receptor ( IGE receptor)
(FC-epsilon-RII)...; C-type lectin, calcium-bound,
lectin domain; 1.30A {Homo sapiens} PDB: 2h2r_A 1t8c_A
1t8d_A
Length = 175
Score = 64.0 bits (156), Expect = 5e-12
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
CP+ W+ ++ CY F K K A+ C ++ L +++ +E F+ +
Sbjct: 17 CPEKWINFQRKCYYFGKGT-KQWVHARYACDDMEGQLVSIHSPEEQDFLTKRA-----SH 70
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
+ G ++ DG++++
Sbjct: 71 TGSWIGLRNLDLKGEFIWVDGSHVD 95
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 62.0 bits (151), Expect = 5e-12
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 673 PNNFPKTFPEAPKA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRIL 726
F K A + G +VR P W + G + + + + RIL
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 727 TIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN 763
I N ++ D EY A +++ S + +++ P+
Sbjct: 66 FINNCQMTDDSEYYVTAGDEK----CSTELFVRSGPS 98
Score = 39.7 bits (93), Expect = 3e-04
Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 16/96 (16%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
G F K + K + P +W+K I P +
Sbjct: 7 GAAFAKILDPAY-QVDKGG---RVRFVVELAD-PKLEVKWYKNG--------QEIRPSTK 53
Query: 249 KRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
F G L IN+ Q+ D Y+ A ++ S
Sbjct: 54 YIFEHKGCQRILFINNC-QMTDDSEYYVTAGDEKCS 88
Score = 39.7 bits (93), Expect = 3e-04
Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 16/96 (16%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
G F K + K + P +W+K I P +
Sbjct: 7 GAAFAKILDPAY-QVDKGG---RVRFVVELAD-PKLEVKWYKNG--------QEIRPSTK 53
Query: 522 KRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
F G L IN+ Q+ D Y+ A ++ S
Sbjct: 54 YIFEHKGCQRILFINNC-QMTDDSEYYVTAGDEKCS 88
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 400 PNNFPKTFPEAPKA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRIL 453
F K A + G +VR P W + G + + + + RIL
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 454 TIPNVKM 460
I N +M
Sbjct: 66 FINNCQM 72
Score = 29.7 bits (67), Expect = 1.0
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 322 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVSDT 377
P + W ++ + + + G L+ + + D Y + T
Sbjct: 33 ADPKLEVKWYKNGQE--IRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCST 89
Score = 29.7 bits (67), Expect = 1.0
Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 595 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSKVSDT 650
P + W ++ + + + G L+ + + D Y + T
Sbjct: 33 ADPKLEVKWYKNGQE--IRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCST 89
Score = 28.9 bits (65), Expect = 1.7
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 762 PNFTIPLTDKHMDNQ-ADLTWTCEAFGVPDVTYSWFRNGE 800
F L + ++ + + E P + W++NG+
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQ 46
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 61.5 bits (150), Expect = 5e-12
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
G+ E P W +G PL + + IL + N ++ GE
Sbjct: 18 FVGETAHFEIE-LSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVS 76
Query: 741 CRASNDRS 748
+A+N +S
Sbjct: 77 FQAANTKS 84
Score = 42.7 bits (101), Expect = 2e-05
Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 17/98 (17%)
Query: 460 MRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 519
M K V ++ P+ +W + +
Sbjct: 3 MALIEVEKPLYGV--EVFVGE---TAHFEIELS-EPDVHGQWKLKGQP--------LAAS 48
Query: 520 SDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
D G LI+++ Q+ G +A+N +
Sbjct: 49 PDCEIIEDGKKHILILHNC-QLGMTGEVSFQAANTKSA 85
Score = 42.3 bits (100), Expect = 3e-05
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 17/98 (17%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
K V ++ P+ +W + +
Sbjct: 3 MALIEVEKPLYGV--EVFVGE---TAHFEIELS-EPDVHGQWKLKGQP--------LAAS 48
Query: 247 SDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
D G LI+++ Q+ G +A+N +
Sbjct: 49 PDCEIIEDGKKHILILHNC-QLGMTGEVSFQAANTKSA 85
Score = 36.5 bits (85), Expect = 0.004
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM 460
G+ E P W +G PL + + IL + N ++
Sbjct: 18 FVGETAHFEIE-LSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQL 69
Score = 33.8 bits (78), Expect = 0.033
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 759 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
A PL + + E PDV W G+
Sbjct: 3 MALIEVEKPLYGVEVFVGETAHFEIE-LSEPDVHGQWKLKGQ 43
Score = 31.1 bits (71), Expect = 0.26
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 322 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSC---NVQSK 373
+ P V+ W P + + DG L + G S N +S
Sbjct: 30 SEPDVHGQWKLKGQP--LAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSA 85
Score = 31.1 bits (71), Expect = 0.26
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 595 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSC---NVQSK 646
+ P V+ W P + + DG L + G S N +S
Sbjct: 30 SEPDVHGQWKLKGQP--LAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSA 85
>1jwi_B Platelet aggregation inducer; domain swapping, C-type lectin,
toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB:
1uex_B
Length = 125
Score = 62.4 bits (152), Expect = 6e-12
Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFW 83
+ C W Y+ CY+ K KT DA+ CK L L +VN +E FI
Sbjct: 1 DEGCLPDWSSYKGHCYKVFKVE-KTWADAEKFCKELVNGGHLMSVNSREEGEFISKLALE 59
Query: 84 QDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ W G + DG L+
Sbjct: 60 KMRIVLVW-IGLSHFWRICPLRWTDGARLD 88
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 61.6 bits (150), Expect = 7e-12
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
G L CV P W + L + E L + N++ +D G Y C
Sbjct: 23 GGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS 81
Query: 743 ASNDRSALESSVTISIQAEP 762
+ +S T+++ A P
Sbjct: 82 FGDQ----TTSATLTVTALP 97
Score = 41.9 bits (99), Expect = 6e-05
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 17/95 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + D+ TL C P +W + N++ P
Sbjct: 9 VRFQEALKDLEVLEGGA-----ATLRCVLSSVAAP-VKWCYGN--------NVLRPGDKY 54
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
G L++ + R +D G Y C ++ S
Sbjct: 55 SLRQEGAMLELVVRNLR-PQDSGRYSCSFGDQTTS 88
Score = 41.9 bits (99), Expect = 6e-05
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 17/95 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
F + D+ TL C P +W + N++ P
Sbjct: 9 VRFQEALKDLEVLEGGA-----ATLRCVLSSVAAP-VKWCYGN--------NVLRPGDKY 54
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
G L++ + R +D G Y C ++ S
Sbjct: 55 SLRQEGAMLELVVRNLR-PQDSGRYSCSFGDQTTS 88
Score = 36.2 bits (84), Expect = 0.006
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKMR--GPY 464
G L CV P W + L + E L + N++ + G Y
Sbjct: 23 GGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRY 78
Score = 30.4 bits (69), Expect = 0.63
Identities = 7/39 (17%), Positives = 8/39 (20%), Gaps = 1/39 (2%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
F L D + T C V W
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVA-APVKWCYGNN 46
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 64.2 bits (156), Expect = 8e-12
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQ 87
R ++W Y CY F+ + T + K NC+ + + D DE F+ +
Sbjct: 79 RGVKYWFCYSTKCYYFIMNK-TTWSGCKANCQHYGVPILKIEDEDELKFLQRHV-----I 132
Query: 88 RRKWYFGGTQQSPN-LWVNEDGTNLN 112
++ G + W D
Sbjct: 133 PGNYWIGLSYDKKKKEWAWIDNGPSK 158
>1qdd_A Lithostathine; pancreatic stone inhibitor, metal binding protein;
HET: SIA NDG GAL; 1.30A {Homo sapiens} SCOP: d.169.1.1
PDB: 1lit_A
Length = 144
Score = 62.8 bits (153), Expect = 8e-12
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIMYQLFWQDPQ 87
CP+ YR CY F + +T DA L C++++S +L +V E F+ +
Sbjct: 14 CPEGTNAYRSYCYYFNEDR-ETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTD 72
Query: 88 RRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ G + W G+ ++
Sbjct: 73 DFNVWIGLHDPKKNRAWHWSSGSLVS 98
>2e3x_C Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 122
Score = 61.7 bits (150), Expect = 9e-12
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQ 84
L CP W+ Y CY+ K DA+ C S L +++ +E F+ L +
Sbjct: 1 LDCPSGWLSYEQHCYKGFNDL-KNWTDAEKFCTEQKKGSHLVSLHSREEEKFV-VNLISE 58
Query: 85 DPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + + G D N+
Sbjct: 59 NLEYPATWIGLGNMWKDCRMEWSDRGNVK 87
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 61.2 bits (149), Expect = 1e-11
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--------ENFNRILTIPNVKVEDQGE 738
GD+V + W + G L R F + IL +V ED+G
Sbjct: 23 GDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGR 81
Query: 739 YICRASNDRS 748
Y + +
Sbjct: 82 YQVITNGGQC 91
Score = 43.9 bits (104), Expect = 1e-05
Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 13/95 (13%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
+ D + R + ++ W K + +
Sbjct: 9 VLIVTPLEDQQVFVGDR-----VEMAVEVSE-EGAQVMWMKNG----VELTREDSFKARY 58
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
RF G LI +D EDRG Y +
Sbjct: 59 RFKKDGKRHILIFSDV-VQEDRGRYQVITNGGQCE 92
Score = 43.9 bits (104), Expect = 1e-05
Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 13/95 (13%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
+ D + R + ++ W K + +
Sbjct: 9 VLIVTPLEDQQVFVGDR-----VEMAVEVSE-EGAQVMWMKNG----VELTREDSFKARY 58
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
RF G LI +D EDRG Y +
Sbjct: 59 RFKKDGKRHILIFSDV-VQEDRGRYQVITNGGQCE 92
Score = 36.2 bits (84), Expect = 0.006
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 9/55 (16%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF--------ENFNRILTIPNVKM 460
GD+V + W + G L R F + IL +V
Sbjct: 23 GDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQ 76
Score = 32.7 bits (75), Expect = 0.086
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
PL D+ + + E W +NG
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGV 46
>3ubu_B Agglucetin subunit beta-2; platelet inhibiting, agkisacucetin,
dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding;
1.91A {Deinagkistrodon acutus}
Length = 126
Score = 62.0 bits (151), Expect = 1e-11
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNC--KSLDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY VK KT +DA+ C + L +V+ +E F+++ +
Sbjct: 4 CPLRWSAYEGHCYLVVKEK-KTWDDAEKFCTEQRKGGHLVSVHSREEADFLVHLAYPILD 62
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G + + DGT L+
Sbjct: 63 LSLIW-MGLSNMWNDCKREWSDGTKLD 88
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 60.8 bits (148), Expect = 1e-11
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
AG E W R GS + + + E LT+ V DQG Y
Sbjct: 21 AAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYA 79
Query: 741 CRASNDRSALESSVT 755
A + + + V
Sbjct: 80 VIAGSSKVKFDLKVI 94
Score = 41.2 bits (97), Expect = 9e-05
Identities = 16/102 (15%), Positives = 24/102 (23%), Gaps = 18/102 (17%)
Query: 183 PDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANL 242
P K P F K+P V W + +
Sbjct: 3 PGKKPV-SAFSKKPRSVEVAAGS-----PAVFEAETER-AGVKVRWQRGG--------SD 47
Query: 243 IDPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
I + G L + + D+GSY A +
Sbjct: 48 ISASNKYGLATEGTRHTLTVREV-GPADQGSYAVIAGSSKVK 88
Score = 40.0 bits (94), Expect = 2e-04
Identities = 13/95 (13%), Positives = 21/95 (22%), Gaps = 17/95 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
F K+P V W + + I +
Sbjct: 9 SAFSKKPRSVEVAAGS-----PAVFEAETER-AGVKVRWQRGG--------SDISASNKY 54
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
G L + + D+GSY A +
Sbjct: 55 GLATEGTRHTLTVREV-GPADQGSYAVIAGSSKVK 88
Score = 35.4 bits (82), Expect = 0.010
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 7/59 (11%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKMR--GPY 464
AG E W R GS + + + E LT+ V G Y
Sbjct: 21 AAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSY 78
Score = 30.4 bits (69), Expect = 0.53
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 759 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ F+ + + + E V W R G
Sbjct: 6 KPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGS 46
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled
coil, C-type lectin, carbohydrate recognition domain;
2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Length = 182
Score = 62.9 bits (153), Expect = 1e-11
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C + + C+ KT ++A +C S L+ E+ + L
Sbjct: 51 CLKGT-KVHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNE 108
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + G + WV+ G +
Sbjct: 109 AEIWLGLNDMAAEGTWVDMTGARIA 133
>1wmz_A Lectin CEL-I, N-acetyl-D-galactosamine-specific C-type; C-type
lectin, N-acetylgalactosamine, invertebrate, sugar
binding protein; HET: NGA A2G; 1.70A {Cucumaria
echinata} SCOP: d.169.1.1 PDB: 1wmy_A*
Length = 140
Score = 61.7 bits (150), Expect = 1e-11
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 28 RCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD-------SDLANVNDADEHGFIMYQ 80
+CP W D CYRF + T +A C S SDL +V+ A E ++
Sbjct: 2 QCPTDWEAEGDHCYRFFNTL-TTWENAHHECVSYSCSTLNVRSDLVSVHSAAEQAYVFNY 60
Query: 81 LFWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
D Q + + G + + ++ DG+ +
Sbjct: 61 WRGIDSQAGQLWIGLYDKYNEGDFIWTDGSKVG 93
>1tn3_A Tetranectin; plasminogen binding, kringle 4, C-type lectin,
carbohydrate recognition domain; 2.00A {Homo sapiens}
SCOP: d.169.1.1 PDB: 1rjh_A 3l9j_C
Length = 137
Score = 61.6 bits (150), Expect = 1e-11
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 25 LELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQ 84
L+ C + + C+ KT ++A +C S L+ E+ + L
Sbjct: 2 LQTVCLKGT-KVHMKCFLAFTQT-KTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQS 59
Query: 85 DPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + G + WV+ G +
Sbjct: 60 VGNEAEIWLGLNDMAAEGTWVDMTGARIA 88
>3gpr_D Rhodocetin subunit delta; disulfide bond, lectin, secreted, toxin,
cell adhesion; 3.20A {Calloselasma rhodostoma}
Length = 124
Score = 61.3 bits (149), Expect = 2e-11
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
CP HW Y CYR KT DA+ C + S LA+++ +E F+
Sbjct: 1 CPLHWSSYNGYCYRVFSEL-KTWEDAESFCYAQHKGSRLASIHSREEEAFVGKLASQTLK 59
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G + W D L+
Sbjct: 60 YTSMW-LGLNNAWAACKWEWSDDAKLD 85
>1umr_C Convulxin beta, CVX beta; lectin, C-type lectin, platelet,
sugar-binding protein, activator, snake venom; 2.40A
{Crotalus durissus terrificus} SCOP: d.169.1.1 PDB:
1uos_B
Length = 125
Score = 61.3 bits (149), Expect = 2e-11
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP 86
CP HW Y CY+ K T DA+ C S L + + +E F++
Sbjct: 4 CPSHWSSYDRYCYKVFKQE-MTWADAEKFCTQQHTGSHLVSFHSTEEVDFVVKMTHQSLK 62
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G + W DGT
Sbjct: 63 STFFW-IGANNIWNKCNWQWSDGTKPE 88
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate
binding, lectin, mannose, sugar BIND protein; 1.80A
{Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A
3pak_A
Length = 148
Score = 61.6 bits (150), Expect = 2e-11
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 5/87 (5%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDP 86
L + D + + K C ++A +E+ I
Sbjct: 25 LSLQGSMLSVGDKVFSTNGQS-VNFDTIKEMCTRAGGNIAVPRTPEENEAIASIA---KK 80
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
Y G Q+P + DG +++
Sbjct: 81 YNNYVYLGMIEDQTPGDFHYLDGASVS 107
>3bx4_B Aggretin beta chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_B
Length = 146
Score = 61.7 bits (150), Expect = 2e-11
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 9 FIFVSFHS-VFSQTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDL 65
FIFVSF V ++ CP W Y CY+ P K DA+ CK S L
Sbjct: 4 FIFVSFGLLVVFLSLSGTGADCPSGWSSYEGHCYKPFNEP-KNWADAERFCKLQPKHSHL 62
Query: 66 ANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ A+E F++ + W G + W DG LN
Sbjct: 63 VSFQSAEEADFVVKLTRPRLKANLVW-MGLSNIWHGCNWQWSDGARLN 109
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin,
C-type lectin, alpha-helical coiled coil, carbohydrate
recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP:
d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A*
3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A*
2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A*
1b08_A 3g84_A* ...
Length = 177
Score = 62.4 bits (152), Expect = 2e-11
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD 85
++ + + ++ K +A+L C LA+ A E+ + +
Sbjct: 52 KVELFPNGQSVGEKIFKTAGFV-KPFTEAQLLCTQAGGQLASPRSAAENAALQQLV---V 107
Query: 86 PQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + T ++ + G +L
Sbjct: 108 AKNEAAFLSMTDSKTEGKFTYPTGESLV 135
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 64.1 bits (155), Expect = 2e-11
Identities = 33/207 (15%), Positives = 61/207 (29%), Gaps = 50/207 (24%)
Query: 597 PGVNYYWARDYFPNFVEEDKRVFV----SYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 652
V +Y++ P +++ V DG+L +++ D G Y+C ++ K ++
Sbjct: 53 EYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKN-ESMV 111
Query: 653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP---SYNWTRR 709
L V P + GD ++ C NW
Sbjct: 112 MKKPVELWVLPEEPRDL-------------RVRVGDTTQMRCSIQSTEEKRVTKVNWMFS 158
Query: 710 GSPLPRNAYFENF----------------NRI------------LTIPNVKVEDQGEYIC 741
++ NR+ + + VK DQG Y C
Sbjct: 159 SGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTC 218
Query: 742 RASNDRSALESSVTIS-IQAEPNFTIP 767
+ ++ + +Q E TI
Sbjct: 219 SIYVGKLESRKTIVLHVVQDEFQRTIS 245
Score = 58.3 bits (140), Expect = 2e-09
Identities = 20/154 (12%), Positives = 39/154 (25%), Gaps = 33/154 (21%)
Query: 686 AGDKVRLECV---AFGYPVPSYNWTRRGSPLPRNAYFENF------------NRI----- 725
G+ V + CV V +W + Y + NR
Sbjct: 19 VGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGD 78
Query: 726 -------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQAD 778
L + +V+ D+G Y C ++ + + P L +
Sbjct: 79 TFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLR---VRVGDT 135
Query: 779 LTWTCEAFGVPD---VTYSWFRNGELGHQMTDLL 809
C + +W + + +L
Sbjct: 136 TQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVL 169
Score = 47.9 bits (113), Expect = 5e-06
Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 48/224 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCY---AGGYPNPSYEWFKEDYVQDRLVANLI--- 243
P + + + + C +W D L
Sbjct: 6 PGLTVSSPQLRVHVG-----ESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 244 -DPLSDKRF----------TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLA 291
+ RF + G+L++ D Q D G Y C+ K S++ + V+L
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV-QKADEGIYTCEIRLKNESMVMKKPVELW 119
Query: 292 ---------FGFIGE-------FNLKRAPEIGNQNWGKAMFCDPP-------TNYPGVNY 328
+G+ + NW + +
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS 372
+ + F N V+ + DG++ +++ D G Y+C++
Sbjct: 180 FQSLGRFRNRVDLTGDI-SRNDGSIKLQTVKESDQGIYTCSIYV 222
Score = 47.9 bits (113), Expect = 5e-06
Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 48/224 (21%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCY---AGGYPNPSYEWFKEDYVQDRLVANLI--- 516
P + + + + C +W D L
Sbjct: 6 PGLTVSSPQLRVHVG-----ESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 517 -DPLSDKRF----------TLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISE-SVQLA 564
+ RF + G+L++ D Q D G Y C+ K S++ + V+L
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV-QKADEGIYTCEIRLKNESMVMKKPVELW 119
Query: 565 ---------FGFIGE-------FNLKRAPEIGNQNWGKAMFCDPP-------TNYPGVNY 601
+G+ + NW + +
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179
Query: 602 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQS 645
+ + F N V+ + DG++ +++ D G Y+C++
Sbjct: 180 FQSLGRFRNRVDLTGDI-SRNDGSIKLQTVKESDQGIYTCSIYV 222
Score = 46.8 bits (110), Expect = 1e-05
Identities = 30/247 (12%), Positives = 62/247 (25%), Gaps = 73/247 (29%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFV----SYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 379
V +Y++ P +++ V DG+L +++ D G Y+C ++ K ++
Sbjct: 53 EYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKN-ESMV 111
Query: 380 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVP---SYNWTRR 436
L V P + GD ++ C NW
Sbjct: 112 MKKPVELWVLPEEPRDL-------------RVRVGDTTQMRCSIQSTEEKRVTKVNWMFS 158
Query: 437 GSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN 496
+ LS +
Sbjct: 159 SGSHTE----------------------------------------EETVLSYDSNMRSG 178
Query: 497 PSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
++R+ +D G++ + + D+G Y C
Sbjct: 179 KFQSL---GRFRNRVDLTGDISRND-------GSIKLQTV-KESDQGIYTCSIYVGKLE- 226
Query: 557 ISESVQL 563
+++ L
Sbjct: 227 SRKTIVL 233
Score = 40.6 bits (94), Expect = 0.001
Identities = 12/101 (11%), Positives = 22/101 (21%), Gaps = 23/101 (22%)
Query: 211 DITLSCYAGGYPNP---SYEWFKEDYVQDRLVANLI------------DPLSDKRFTLSG 255
+ C W L R L+G
Sbjct: 135 TTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTG 194
Query: 256 ------GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
G++ + + D+G Y C +++ L
Sbjct: 195 DISRNDGSIKLQTV-KESDQGIYTCSIYVGKLE-SRKTIVL 233
>1jwi_A Bitiscetin; domain swapping, C-type lectin, toxin; 2.00A {Bitis
arietans} SCOP: d.169.1.1 PDB: 1uex_A
Length = 131
Score = 60.9 bits (148), Expect = 2e-11
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
C W Y+ CY+ K T DA+ C LA+++ +E F+ +L Q +
Sbjct: 4 CLPDWSSYKGHCYKVFKKV-GTWEDAEKFCVENSGHLASIDSKEEADFV-TKLASQTLTK 61
Query: 89 RKWYF--GGTQQSPN---LWVNEDGTNLN 112
+ G +S DG+++
Sbjct: 62 FVYDAWIGLRDESKTQQCSPQWTDGSSVV 90
>1j34_B Coagulation factor IX-binding protein B chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_B 1ixx_B* 1j35_B* 1x2t_B*
1x2w_B 1wt9_B 1iod_B 1y17_B
Length = 123
Score = 60.5 bits (147), Expect = 3e-11
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS--DLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY+ P K DA+ C + L + ++E F++ F
Sbjct: 2 CPSDWSSYEGHCYKPFSEP-KNWADAENFCTQQHAGGHLVSFQSSEEADFVVKLAFQTFG 60
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G + + W + L
Sbjct: 61 HSIFW-MGLSNVWNQCNWQWSNAAMLR 86
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 60.8 bits (147), Expect = 3e-11
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 13/108 (12%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVANL--- 242
G FI++P + + DIT P+ +WFK ++ A
Sbjct: 7 GILFIEKPQGGTVKVGE-----DITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61
Query: 243 IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ ++ + + I + G+Y C+ + K S S L
Sbjct: 62 LKETFERHSRVYTFEMQIIKA-KDNFAGNYRCEVTYKDKF-DSCSFDL 107
Score = 60.8 bits (147), Expect = 3e-11
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 13/108 (12%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVANL--- 515
G FI++P + + DIT P+ +WFK ++ A
Sbjct: 7 GILFIEKPQGGTVKVGE-----DITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQ 61
Query: 516 IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+ ++ + + I + G+Y C+ + K S S L
Sbjct: 62 LKETFERHSRVYTFEMQIIKA-KDNFAGNYRCEVTYKDKF-DSCSFDL 107
Score = 50.4 bits (120), Expect = 9e-08
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 21/104 (20%)
Query: 680 FPEAPK-----AGDKVRLECVAFGYPV---PSYNWTR---------RGSPLPRNAYFENF 722
F E P+ G+ + + P+ W + G L FE
Sbjct: 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 69
Query: 723 NRI----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
+R+ + I K G Y C + S + +
Sbjct: 70 SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
>2kv3_A Regenerating islet-derived protein 4; GISP, C-type lectin, REG IV,
disulfide bond, glycoPro lectin, secreted, sugar binding
protein; NMR {Homo sapiens}
Length = 131
Score = 60.9 bits (148), Expect = 3e-11
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
C W ++ +CY + + + +DA+L C+S + LA++ E I +
Sbjct: 3 CAPGWFYHKSNCYGYFRKL-RNWSDAELECQSYGNGAHLASILSLKEASTIAEYISGYQR 61
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ W G Q W DG
Sbjct: 62 SQSIW-IGLHDPQKRQQWQWIDGAMYL 87
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 60.1 bits (146), Expect = 3e-11
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
KA ++ +C + W + G + + L I +V+ ED+G+Y
Sbjct: 21 KAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYT 79
Query: 741 CRASNDRSALESSVTISIQAEPNFTIP 767
+L + + E + P
Sbjct: 80 FVPDGYALSLSAKLNF---LEIKVSGP 103
Score = 45.1 bits (107), Expect = 5e-06
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 21/97 (21%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
++ D+ ++ C + +W+K + P K
Sbjct: 9 LEVLQDIADLTVKAAE-----QAVFKCEVSD-EKVTGKWYKNG--------VEVRP--SK 52
Query: 250 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGS 282
R T+S L+I+D + ED G Y S
Sbjct: 53 RITISHVGRFHKLVIDDV-RPEDEGDYTFVPDGYALS 88
Score = 45.1 bits (107), Expect = 5e-06
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 21/97 (21%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
++ D+ ++ C + +W+K + P K
Sbjct: 9 LEVLQDIADLTVKAAE-----QAVFKCEVSD-EKVTGKWYKNG--------VEVRP--SK 52
Query: 523 RFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGS 555
R T+S L+I+D + ED G Y S
Sbjct: 53 RITISHVGRFHKLVIDDV-RPEDEGDYTFVPDGYALS 88
Score = 34.3 bits (79), Expect = 0.030
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 759 QAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ + D + + CE VT W++NG
Sbjct: 6 SGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGV 46
Score = 32.4 bits (74), Expect = 0.12
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM 460
KA ++ +C + W + G + + L I +V+
Sbjct: 21 KAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRP 72
Score = 30.0 bits (68), Expect = 0.75
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSC 368
V W ++ V KR+ +S+ G L + D G+Y+
Sbjct: 35 EKVTGKWYKNGVE--VRPSKRITISHVGRFHKLVIDDVRPEDEGDYTF 80
Score = 30.0 bits (68), Expect = 0.75
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSC 641
V W ++ V KR+ +S+ G L + D G+Y+
Sbjct: 35 EKVTGKWYKNGVE--VRPSKRITISHVGRFHKLVIDDVRPEDEGDYTF 80
>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.50A {Mus musculus}
Length = 190
Score = 62.2 bits (151), Expect = 3e-11
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
++W Y CY FV KT + K C+ L +++ DE F+ +
Sbjct: 67 FEKYWFCYGIKCYYFVMDR-KTWSGCKQTCQISSLSLLKIDNEDELKFLKLLV-----PS 120
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
++ G + W +
Sbjct: 121 DSYWIGLSYDNKKKDWAWINNGPSK 145
>1c3a_B Flavocetin-A: beta subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_B
Length = 125
Score = 60.5 bits (147), Expect = 3e-11
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
CP W Y + CY+ + DA+ C S L + + ++E F+ + F
Sbjct: 4 CPLGWSSYDEHCYQVFQQK-MNWEDAEKFCTQQHKGSHLVSFHSSEEVDFVTSKTFPILK 62
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G + + DGT L+
Sbjct: 63 YDFVW-IGLSNVWNECTKEWSDGTKLD 88
>1fvu_B Botrocetin beta chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_C
1u0n_C 1u0o_B
Length = 125
Score = 60.1 bits (146), Expect = 4e-11
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CYRF K +DA+ C + L + +E F+
Sbjct: 2 CPPDWSSYEGHCYRFFKEW-MHWDDAEEFCTEQQTGAHLVSFQSKEEADFVRSLTSEMLK 60
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G + + + DG +
Sbjct: 61 GDVVW-IGLSDVWNKCRFEWTDGMEFD 86
>1ukm_B EMS16 B chain, EMS16 subunit B; domain swapping, C-type lectin,
toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP:
d.169.1.1 PDB: 1v7p_B*
Length = 128
Score = 60.2 bits (146), Expect = 4e-11
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
CP W + CY+ + K +A+ C S LA+++ ++E F+
Sbjct: 1 CPLGWSSFDQHCYKVFEPV-KNWTEAEEICMQQHKGSRLASIHSSEEEAFVSKLASKALK 59
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G W D +
Sbjct: 60 FTSMW-IGLNNPWKDCKWEWSDNARFD 85
>3ubu_A Agglucetin subunit alpha-1; platelet inhibiting, agkisacucetin,
dimer, toxin, C-type LEC GPIB inhibitor, GPIB binding;
1.91A {Deinagkistrodon acutus}
Length = 131
Score = 60.1 bits (146), Expect = 4e-11
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFW 83
++ C W Y SCYR K KT +DA+ C L ++ A E F+ +
Sbjct: 1 DVDCLPGWSAYDQSCYRVFKLL-KTWDDAEKFCTERPKGGHLVSIESAGERDFVAQLVSE 59
Query: 84 QDPQRRKWYFGGTQQSPN-----LWVNEDGTNLN 112
W G QS W DG++++
Sbjct: 60 NKQTDNVW-LGLKIQSKGQQCSTEWT--DGSSVS 90
>1egg_A Macrophage mannose receptor; C-type lectin, sugar binding protein;
2.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1egi_A
Length = 147
Score = 60.5 bits (147), Expect = 4e-11
Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 28 RCPQHWV--QYRDSCYRFVKSPLKTR---NDAKLNCKSLDSDLANVNDADEHGFIMYQLF 82
+CP+ W C++ + +++ C++L DLA++N+ +E I +
Sbjct: 4 KCPEDWGASSRTSLCFKLYAKGKHEKKTWFESRDFCRALGGDLASINNKEEQQTIWRLIT 63
Query: 83 WQDPQRRKWYFGGTQQSPN-LWVNEDGTNLN 112
+ ++ G T SP+ + DG+ ++
Sbjct: 64 ASGSYHKLFWLGLTYGSPSEGFTWSDGSPVS 94
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 58.9 bits (143), Expect = 6e-11
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 9/80 (11%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
C +P + W + L + E LTI ++ D Y C
Sbjct: 23 KGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD 81
Query: 743 ASNDRSALESSVTISIQAEP 762
+ S + +Q
Sbjct: 82 IGQAQ----SRAQLLVQGRR 97
Score = 40.8 bits (96), Expect = 1e-04
Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 17/95 (17%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F ++ T++ + +C P + W K +
Sbjct: 9 NCFTEELTNLQVEEKG-----TAVFTCKTEH-PAATVTWRKGL--------LELRASGKH 54
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
+ + G L I+ + D +Y C
Sbjct: 55 QPSQEGLTLRLTISAL-EKADSDTYTCDIGQAQSR 88
Score = 40.8 bits (96), Expect = 1e-04
Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 17/95 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
F ++ T++ + +C P + W K +
Sbjct: 9 NCFTEELTNLQVEEKG-----TAVFTCKTEH-PAATVTWRKGL--------LELRASGKH 54
Query: 523 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
+ + G L I+ + D +Y C
Sbjct: 55 QPSQEGLTLRLTISAL-EKADSDTYTCDIGQAQSR 88
Score = 36.2 bits (84), Expect = 0.005
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 7/57 (12%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKMR--GPY 464
C +P + W + L + E LTI ++ Y
Sbjct: 23 KGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTY 78
Score = 31.9 bits (73), Expect = 0.19
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
FT LT+ ++ + +TC+ P T +W +
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLL 46
Score = 28.5 bits (64), Expect = 2.9
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNV 370
P W + + + S +G L SALE+ D+ Y+C++
Sbjct: 35 PAATVTWRKGLLE--LRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI 82
Score = 28.5 bits (64), Expect = 2.9
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNV 643
P W + + + S +G L SALE+ D+ Y+C++
Sbjct: 35 PAATVTWRKGLLE--LRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI 82
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 62.1 bits (150), Expect = 7e-11
Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 31/147 (21%)
Query: 686 AGDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRI------------------- 725
G V L+C G W R +
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 726 -----LTIPNVKVEDQGEYICRASNDRSAL-ESSVTISIQAEPNFTI----PLTDKHMDN 775
L + +V D+ +Y+C + E++ +++ A+P T T M++
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133
Query: 776 QADLTWTCEAF-GVPDVTYSWFRNGEL 801
A TC + G P +W+RNG+
Sbjct: 134 SAQEIATCNSRNGNPAPKITWYRNGQR 160
Score = 54.4 bits (130), Expect = 3e-08
Identities = 24/193 (12%), Positives = 48/193 (24%), Gaps = 37/193 (19%)
Query: 591 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 650
+ + V + R P + G L + + D +Y C V++ + T
Sbjct: 51 EMQGSELQVTMHDTRGRSP-------PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGT 103
Query: 651 GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRR 709
+ P + + N + + C + G P P W R
Sbjct: 104 AEATARLNVFAKP----EATEVSPNKGTLSVM--EDSAQEIATCNSRNGNPAPKITWYRN 157
Query: 710 GSPLPRNAYFENFNRI-----------------LTIPNVKVEDQGEYICRASN------D 746
G L + L + K + + C A
Sbjct: 158 GQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRH 217
Query: 747 RSALESSVTISIQ 759
+ +++
Sbjct: 218 GRLDSPTFHLTLH 230
Score = 46.0 bits (108), Expect = 2e-05
Identities = 21/148 (14%), Positives = 40/148 (27%), Gaps = 14/148 (9%)
Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 377
+ + V + R P + G L + + D +Y C V++ + T
Sbjct: 51 EMQGSELQVTMHDTRGRSP-------PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGT 103
Query: 378 GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAF-GYPVPSYNWTRR 436
+ P + + N + + C + G P P W R
Sbjct: 104 AEATARLNVFAKP----EATEVSPNKGTLSVM--EDSAQEIATCNSRNGNPAPKITWYRN 157
Query: 437 GSPLPRNAYFENFNRILTIPNVKMRGPY 464
G L + + + G
Sbjct: 158 GQRLEVPVEMNPEGYMTSRTVREASGLL 185
Score = 42.9 bits (100), Expect = 2e-04
Identities = 26/216 (12%), Positives = 53/216 (24%), Gaps = 67/216 (31%)
Query: 413 AGDKVRLECVAFGYP-VPSYNWTRRGSPLPRNAYFENFNRI------------------- 452
G V L+C G W R +
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 453 -----LTIPNVKMR--GPYF-------------------IKQPTDVVFDLSKRSIL---- 482
L + ++ Y +P +K ++
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMED 133
Query: 483 -NDITLSCYA-GGYPNPSYEWFKE--------DYVQDRLVANLIDPLSDKRFTLSGGNLI 532
+C + G P P W++ + + + + + +L+ L
Sbjct: 134 SAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT-STLY 192
Query: 533 INDPRQVEDRGSYHCKAS-----NKFGSIISESVQL 563
+ R+ + S+HC A + G + S + L
Sbjct: 193 LR-LRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHL 227
Score = 39.4 bits (91), Expect = 0.003
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 16/95 (16%)
Query: 210 NDITLSCYA-GGYPNPSYEWFKE--------DYVQDRLVANLIDPLSDKRFTLSGGNLII 260
+C + G P P W++ + + + + + +L+ L +
Sbjct: 135 AQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLT-STLYL 193
Query: 261 NDPRQVEDRGSYHCKAS-----NKFGSIISESVQL 290
R+ + S+HC A + G + S + L
Sbjct: 194 R-LRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHL 227
Score = 36.7 bits (84), Expect = 0.019
Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 20/142 (14%)
Query: 211 DITLSC-YAGGYPNPSYEWFKED--------YVQDRLVANLIDPLSDKRF------TLSG 255
+ L C G + + EWF D + + L + D R S
Sbjct: 17 SVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ 76
Query: 256 GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL----AFGFIGEFNLKRAPEIGNQNW 311
G L++ + QV D Y C + +L K + +
Sbjct: 77 GRLVLAEA-QVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSA 135
Query: 312 GKAMFCDPPTNYPGVNYYWARD 333
+ C+ P W R+
Sbjct: 136 QEIATCNSRNGNPAPKITWYRN 157
Score = 36.7 bits (84), Expect = 0.019
Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 20/142 (14%)
Query: 484 DITLSC-YAGGYPNPSYEWFKED--------YVQDRLVANLIDPLSDKRF------TLSG 528
+ L C G + + EWF D + + L + D R S
Sbjct: 17 SVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ 76
Query: 529 GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL----AFGFIGEFNLKRAPEIGNQNW 584
G L++ + QV D Y C + +L K + +
Sbjct: 77 GRLVLAEA-QVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSA 135
Query: 585 GKAMFCDPPTNYPGVNYYWARD 606
+ C+ P W R+
Sbjct: 136 QEIATCNSRNGNPAPKITWYRN 157
>1oz7_B Echicetin B-chain; platelet aggregation, dimer, toxin; 2.40A {Echis
carinatus} SCOP: d.169.1.1
Length = 123
Score = 59.3 bits (144), Expect = 7e-11
Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQDP 86
C W Y CY+ K DA+ C D L + ++ E F++ F
Sbjct: 2 CLPDWSVYEGYCYKVFKER-MNWADAEKFCTKQHKDGHLVSFRNSKEVDFVISLAFPMLK 60
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
W G T W DG L+
Sbjct: 61 NDLVW-IGLTDYWRDCNWEWSDGAQLD 86
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 58.5 bits (142), Expect = 8e-11
Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Query: 671 KFPNNFPKTFPEAPKA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFN 723
K F K A + G K+RL W + G + +
Sbjct: 13 KKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAK 71
Query: 724 RILTIPNVKVEDQGEYICRASNDRS 748
R LTI + D Y C ++
Sbjct: 72 RTLTISQCSLADDAAYQCVVGGEKC 96
Score = 43.9 bits (104), Expect = 1e-05
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 17/99 (17%)
Query: 187 PRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPL 246
+ F K+ +SK I L+ + +W K I
Sbjct: 13 KKSTAFQKKLEPAY-QVSKGH---KIRLTVELAD-HDAEVKWLKNG--------QEIQMS 59
Query: 247 SDKRFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGS 282
K S G L I+ + D +Y C + S
Sbjct: 60 GSKYIFESIGAKRTLTISQC-SLADDAAYQCVVGGEKCS 97
Score = 43.5 bits (103), Expect = 2e-05
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 17/96 (17%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
F K+ +SK I L+ + +W K I K
Sbjct: 16 TAFQKKLEPAY-QVSKGH---KIRLTVELAD-HDAEVKWLKNG--------QEIQMSGSK 62
Query: 523 RFTLSGGN---LIINDPRQVEDRGSYHCKASNKFGS 555
S G L I+ + D +Y C + S
Sbjct: 63 YIFESIGAKRTLTISQC-SLADDAAYQCVVGGEKCS 97
Score = 33.9 bits (78), Expect = 0.034
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 8/70 (11%)
Query: 398 KFPNNFPKTFPEAPKA--GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFN 450
K F K A + G K+RL W + G + +
Sbjct: 13 KKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAK 71
Query: 451 RILTIPNVKM 460
R LTI +
Sbjct: 72 RTLTISQCSL 81
Score = 31.2 bits (71), Expect = 0.31
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 4/52 (7%)
Query: 751 ESSVTISIQAEPNFTIPLTDKH--MDNQADLTWTCEAFGVPDVTYSWFRNGE 800
++ + F L + + T E D W +NG+
Sbjct: 5 HHHSSMDEKKSTAFQKKLEPAYQVSKGH-KIRLTVELAD-HDAEVKWLKNGQ 54
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 61.6 bits (149), Expect = 9e-11
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 29/143 (20%)
Query: 686 AGDKVRLECVAFGYPVPSYN-----WTRRGSPLPRNAYFENFNRI--------------- 725
GD V L C + + W R G + +
Sbjct: 13 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 72
Query: 726 -------LTIPNVKVEDQGEYICRASNDRS-ALESSVTISIQAEPNFTIPLTDKHMDNQA 777
L + ++VED+G Y C + + + + A+P T + + +
Sbjct: 73 AELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEP 132
Query: 778 DLTWTCEAFGV-PDVTYSWFRNG 799
C + G P +W +
Sbjct: 133 VPMARCVSTGGRPPAQITWHSDL 155
Score = 56.2 bits (135), Expect = 6e-09
Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 20/150 (13%)
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPE 682
D +L L D G+Y+C + G L+V P N +
Sbjct: 77 DASLRMFGLRVEDEGSYTCLFVT--FPQGSRSVDIWLRVLAK--------PQNTAEVQKV 126
Query: 683 APKAGDKVRLECVAFG-YPVPSYNWTRRGSPLPRNAYFENF-------NRILTIPNVKVE 734
CV+ G P W +P+ + F + +
Sbjct: 127 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQV 186
Query: 735 DQGEYICRASND--RSALESSVTISIQAEP 762
D + C+ ++ +V++++
Sbjct: 187 DGKQVTCKVEHESFEKPQLLTVSLTVYYPH 216
Score = 45.8 bits (108), Expect = 2e-05
Identities = 29/202 (14%), Positives = 46/202 (22%), Gaps = 55/202 (27%)
Query: 413 AGDKVRLECVAFGYPVPSYN-----WTRRGSPLPRNAYFENFNRI--------------- 452
GD V L C + + W R G + +
Sbjct: 13 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLG 72
Query: 453 -------LTIPNVKMR--GPYFIKQPTDVVFDLSKRSILN-------------------- 483
L + +++ G Y T S L
Sbjct: 73 AELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEP 132
Query: 484 DITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
C + GG P W + + T++ +L I P D
Sbjct: 133 VPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFL--SGTVTVT--SLWILVPSSQVDG 188
Query: 543 GSYHCKASNK-FGSIISESVQL 563
CK ++ F +V L
Sbjct: 189 KQVTCKVEHESFEKPQLLTVSL 210
Score = 42.0 bits (98), Expect = 3e-04
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 211 DITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
C + GG P W + + T++ +L I P D
Sbjct: 133 VPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFL--SGTVTVT--SLWILVPSSQVDG 188
Query: 270 GSYHCKASNK-FGSIISESVQL 290
CK ++ F +V L
Sbjct: 189 KQVTCKVEHESFEKPQLLTVSL 210
Score = 39.7 bits (92), Expect = 0.002
Identities = 30/209 (14%), Positives = 47/209 (22%), Gaps = 31/209 (14%)
Query: 211 DITLSCYAGGYPNPSY-----EWFKEDYVQDRLVANLI---DPLSDKRFTLSG------- 255
+TL CY W + V + KR
Sbjct: 16 SVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAEL 75
Query: 256 --GNLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 313
+L + +VED GSY C S + L + +
Sbjct: 76 RDASLRMFGL-RVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVP 134
Query: 314 AMFCDPPTNYPGVNYYWARDYFPNFVEE------DKRVFVSYDGALYFSALEQIDAGNYS 367
C P W D V V+ Q+D +
Sbjct: 135 MARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVT--SLWILVPSSQVDGKQVT 192
Query: 368 CNVQSKVSDTGRNGPF-----FPLKVFPH 391
C V+ + + + +P H
Sbjct: 193 CKVEHESFEKPQLLTVSLTVYYPHHHHHH 221
>1oz7_A Echicetin A-chain; platelet aggregation, dimer, toxin; 2.40A {Echis
carinatus} SCOP: d.169.1.1
Length = 131
Score = 59.4 bits (144), Expect = 9e-11
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDP 86
CP W CY K P KT ++A+ C D L ++ E + +
Sbjct: 2 CPPGWSSNGVYCYMLFKEP-KTWDEAEKFCNKQGKDGHLLSIESKKEEILVDIVVSENIG 60
Query: 87 QRRKWYFGGTQQS---PNLWVNEDGTNLN 112
+ K + G +++S DG+
Sbjct: 61 KMYKIWTGLSERSKEQHCSSRWSDGSFFR 89
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 58.5 bits (142), Expect = 1e-10
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 10/80 (12%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYICR 742
G L C + W + L + L I + ED GEY+C
Sbjct: 34 GATAVLRCELSK--MAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM 91
Query: 743 ASNDRSALESSVTISIQAEP 762
+R +S ++++A P
Sbjct: 92 CGKER----TSAMLTVRAMP 107
Score = 43.5 bits (103), Expect = 2e-05
Identities = 16/100 (16%), Positives = 22/100 (22%), Gaps = 18/100 (18%)
Query: 458 VKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLID 517
V+ F + + L C EW+K +
Sbjct: 15 VRALPIKFTEGLRNEEATEGA-----TAVLRCELSK--MAPVEWWKGH--------ETLR 59
Query: 518 PLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
G L I ED G Y C + S
Sbjct: 60 DGDRHSLRQDGARCELQIRGL-VAEDAGEYLCMCGKERTS 98
Score = 41.2 bits (97), Expect = 1e-04
Identities = 15/95 (15%), Positives = 20/95 (21%), Gaps = 18/95 (18%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
F + + L C EW+K +
Sbjct: 20 IKFTEGLRNEEATEGA-----TAVLRCELSK--MAPVEWWKGH--------ETLRDGDRH 64
Query: 250 RFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
G L I ED G Y C + S
Sbjct: 65 SLRQDGARCELQIRGL-VAEDAGEYLCMCGKERTS 98
Score = 38.9 bits (91), Expect = 8e-04
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 745 NDRSALESSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ S+ +S ++++A P FT L ++ A CE + V W++ E
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAPVE--WWKGHE 56
Score = 33.9 bits (78), Expect = 0.049
Identities = 7/51 (13%), Positives = 11/51 (21%), Gaps = 6/51 (11%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM 460
G L C + W + L + L I +
Sbjct: 34 GATAVLRCELSK--MAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVA 82
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 58.8 bits (142), Expect = 1e-10
Identities = 16/106 (15%), Positives = 27/106 (25%), Gaps = 17/106 (16%)
Query: 679 TFP------EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF-----------EN 721
+ + G P PS W GS L ++
Sbjct: 1 SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 722 FNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIP 767
+ L + + G Y A+N +S+ + P P
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP 106
Score = 52.6 bits (126), Expect = 2e-08
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 209 LNDITLSCYAGGYPNPSYEWFKED-YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 267
++ + G P PS W + + T+ G L +N P
Sbjct: 15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-V 73
Query: 268 DRGSYHCKASNKFGSIISESVQLAF 292
+ G+Y A+N FG S S+ AF
Sbjct: 74 NNGNYTLLAANPFGQ-ASASIMAAF 97
Score = 52.6 bits (126), Expect = 2e-08
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 482 LNDITLSCYAGGYPNPSYEWFKED-YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVE 540
++ + G P PS W + + T+ G L +N P
Sbjct: 15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH-V 73
Query: 541 DRGSYHCKASNKFGSIISESVQLAF 565
+ G+Y A+N FG S S+ AF
Sbjct: 74 NNGNYTLLAANPFGQ-ASASIMAAF 97
Score = 35.3 bits (81), Expect = 0.016
Identities = 12/71 (16%), Positives = 17/71 (23%), Gaps = 6/71 (8%)
Query: 406 TFP------EAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVK 459
+ + G P PS W GS L ++
Sbjct: 1 SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 460 MRGPYFIKQPT 470
G + QPT
Sbjct: 61 RHGCLRLNQPT 71
Score = 28.4 bits (63), Expect = 4.4
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 333 DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 374
+ E G L + ++ GNY+ +
Sbjct: 45 SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 86
Score = 28.4 bits (63), Expect = 4.4
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 606 DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
+ E G L + ++ GNY+ +
Sbjct: 45 SFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 86
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 58.2 bits (140), Expect = 1e-10
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 10/105 (9%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP--SYEWFKEDYV--QDRLVANLIDP 245
P QP +D++ +C A + ++ W ++ +
Sbjct: 11 PQITVQPETQSAIXG-----SDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65
Query: 246 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
L + + + G Y C SN FGS S L
Sbjct: 66 AQGGELMEYTTILRLRNV-EFTSEGXYQCVISNHFGSSYSVXAXL 109
Score = 58.2 bits (140), Expect = 1e-10
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 10/105 (9%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNP--SYEWFKEDYV--QDRLVANLIDP 518
P QP +D++ +C A + ++ W ++ +
Sbjct: 11 PQITVQPETQSAIXG-----SDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65
Query: 519 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
L + + + G Y C SN FGS S L
Sbjct: 66 AQGGELMEYTTILRLRNV-EFTSEGXYQCVISNHFGSSYSVXAXL 109
Score = 53.9 bits (129), Expect = 4e-09
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 14/73 (19%)
Query: 687 GDKVRLECVAFGYPVP--SYNWTRRGSPLP------------RNAYFENFNRILTIPNVK 732
G V C A ++ W L + + IL + NV+
Sbjct: 25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84
Query: 733 VEDQGEYICRASN 745
+G Y C SN
Sbjct: 85 FTSEGXYQCVISN 97
Score = 37.0 bits (85), Expect = 0.003
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 16/67 (23%)
Query: 414 GDKVRLECVAFGYPVP--SYNWTRRGSPLP------------RNAYFENFNRILTIPNVK 459
G V C A ++ W L + + IL + NV+
Sbjct: 25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84
Query: 460 MR--GPY 464
G Y
Sbjct: 85 FTSEGXY 91
Score = 30.4 bits (68), Expect = 0.78
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 762 PNFTIPLTDKHMDNQADLTWTCEAFGVPD--VTYSWFRNGE 800
P T+ + +D+++TC A D +T++W + E
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNE 51
>1jzn_A Galactose-specific lectin; C-type lectin, protein-disaccharide
complex, sugar binding P; HET: BGC GAL; 2.20A {Crotalus
atrox} SCOP: d.169.1.1 PDB: 1muq_A*
Length = 135
Score = 59.0 bits (143), Expect = 1e-10
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS--DLANVNDADEHGFIMYQLFWQDP 86
CP W+ CY+ KT DA++ C+ LA+ + E I +
Sbjct: 3 CPLDWLPMNGLCYKIFNQL-KTWEDAEMFCRKYKPGCHLASFHRYGESLEIAEYISDYHK 61
Query: 87 QRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + G ++ W D + +
Sbjct: 62 GQENVWIGLRDKKKDFSWEWTDRSCTD 88
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 57.7 bits (140), Expect = 2e-10
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
G ++ L+C WT+ G P+ + + L I N ED+G+Y+
Sbjct: 20 NLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYV 77
Query: 741 CRASNDRSALESSVTISIQAEPN 763
+ + + P+
Sbjct: 78 FAPDAYNV--TLPAKVHVISGPS 98
Score = 40.0 bits (94), Expect = 2e-04
Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 18/101 (17%)
Query: 457 NVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
+ G + TD +L K I L C N +W K +
Sbjct: 2 SSGSSGLKILTPLTDQTVNLGKE-----ICLKCEISE--NIPGKWTKNG--------LPV 46
Query: 517 DPLSDKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 555
+ G L+I + ED G Y +
Sbjct: 47 QESDRLKVVQKGRIHKLVIANA-LTEDEGDYVFAPDAYNVT 86
Score = 40.0 bits (94), Expect = 3e-04
Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 18/97 (18%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS 247
G + TD +L K I L C N +W K +
Sbjct: 6 SGLKILTPLTDQTVNLGKE-----ICLKCEISE--NIPGKWTKNG--------LPVQESD 50
Query: 248 DKRFTLSGGN--LIINDPRQVEDRGSYHCKASNKFGS 282
+ G L+I + ED G Y +
Sbjct: 51 RLKVVQKGRIHKLVIANA-LTEDEGDYVFAPDAYNVT 86
Score = 33.5 bits (77), Expect = 0.055
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM 460
G ++ L+C WT+ G P+ + + L I N
Sbjct: 20 NLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANALT 70
Score = 32.7 bits (75), Expect = 0.10
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 760 AEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
+ PLTD+ ++ ++ CE W +NG
Sbjct: 6 SGLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGL 44
Score = 28.8 bits (65), Expect = 2.0
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 330 WARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSK 373
W ++ P V+E R+ V G L + D G+Y +
Sbjct: 39 WTKNGLP--VQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY 83
Score = 28.8 bits (65), Expect = 2.0
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 603 WARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNVQSK 646
W ++ P V+E R+ V G L + D G+Y +
Sbjct: 39 WTKNGLP--VQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY 83
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 59.9 bits (145), Expect = 2e-10
Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 24/139 (17%)
Query: 619 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPK 678
+GAL + + D G+Y + + D + ++V+
Sbjct: 64 LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWK----ITMEVYE-------------MV 106
Query: 679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE 738
+ P L C + L R T+ +
Sbjct: 107 SKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-------RQKTMSYQWTNLRAP 159
Query: 739 YICRASNDRSALESSVTIS 757
+ C+A N S ++
Sbjct: 160 FKCKAVNRVSQESEMEVVN 178
Score = 57.2 bits (138), Expect = 1e-09
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 12/87 (13%)
Query: 718 YFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA---EPNFTIPLTDKHMD 774
+ N L I NV ED+G+Y R ++ + +T+ + +P
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHETED-QWKITMEVYEMVSKPMIYW-------- 113
Query: 775 NQADLTWTCEAFGVPDVTYSWFRNGEL 801
++ T TCE DV ++ E
Sbjct: 114 ECSNATLTCEVLEGTDVELKLYQGKEH 140
Score = 44.1 bits (104), Expect = 4e-05
Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 33/132 (25%)
Query: 445 YFENFNRILTIPNVKMR--GPYFIKQPTD---------VVFD-LSKRSIL---NDITLSC 489
+ N L I NV G Y+++ + V++ +SK I ++ TL+C
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTC 122
Query: 490 YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 549
+ + ++ K S ++ + R + CKA
Sbjct: 123 EVLEGTDVELKLYQ-----------------GKEHLRSLRQKTMS-YQWTNLRAPFKCKA 164
Query: 550 SNKFGSIISESV 561
N+ V
Sbjct: 165 VNRVSQESEMEV 176
Score = 43.7 bits (103), Expect = 5e-05
Identities = 14/119 (11%), Positives = 31/119 (26%), Gaps = 22/119 (18%)
Query: 346 FVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPK 405
+GAL + + D G+Y + + D + ++V+
Sbjct: 64 LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWK----ITMEVYE-------------MV 106
Query: 406 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPY 464
+ P L C + L + ++ +R P+
Sbjct: 107 SKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLR-----SLRQKTMSYQWTNLRAPF 160
Score = 40.6 bits (95), Expect = 6e-04
Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 18/77 (23%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
TL+C + + ++ K S ++ + R
Sbjct: 118 ATLTCEVLEGTDVELKLYQ-----------------GKEHLRSLRQKTMS-YQWTNLRAP 159
Query: 272 YHCKASNKFGSIISESV 288
+ CKA N+ V
Sbjct: 160 FKCKAVNRVSQESEMEV 176
Score = 37.6 bits (87), Expect = 0.007
Identities = 21/173 (12%), Positives = 48/173 (27%), Gaps = 27/173 (15%)
Query: 211 DITLSC-YAGGYPNPSYEWFKED------YVQDRLVANLIDPLSDK-RFTLSGGNLIIND 262
++TL+ W Y + D+ + G L I +
Sbjct: 16 NVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYN 75
Query: 263 PRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTN 322
+ EDRG Y+ + ++ ++++ + + P I + + C+
Sbjct: 76 VSK-EDRGDYYMRMLHETEDQWKITMEV-------YEMVSKPMIYWECSNATLTCEVL-E 126
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
V + + + S + C ++VS
Sbjct: 127 GTDVELKLYQG----------KEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 169
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 60.3 bits (145), Expect = 2e-10
Identities = 26/201 (12%), Positives = 46/201 (22%), Gaps = 65/201 (32%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY----- 464
+ V L C + W + G + + + + RG Y
Sbjct: 16 QEDGSVLLTC---DAEAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGS 69
Query: 465 -----------FIKQPTDVVFDLSKRSIL------------------------------N 483
+ D D +K+
Sbjct: 70 QNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-NLIINDPRQVEDR 542
+ L+C YP W D I D + S +L + + ++E
Sbjct: 130 TVILTCPQ--YPGSEILWQHND--------KNIGGDEDDKNIGSDEDHLSLKEFSELEQS 179
Query: 543 GSYHCKASNKFGSIISESVQL 563
G Y C + + L
Sbjct: 180 GYYVCYPRGSKPEDANFYLYL 200
Score = 57.6 bits (138), Expect = 2e-09
Identities = 16/144 (11%), Positives = 41/144 (28%), Gaps = 35/144 (24%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
+ V L C + W + G + + + + + +G Y C+ S
Sbjct: 16 QEDGSVLLTC---DAEAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGS 69
Query: 745 NDRS--------------ALESSVTISIQAEPNFTIPLTDKHMD-------------NQA 777
++S A + + + + +D + + +
Sbjct: 70 QNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129
Query: 778 DLTWTCEAFGVPDVTYSWFRNGEL 801
+ TC + ++ W N +
Sbjct: 130 TVILTCPQYPGSEIL--WQHNDKN 151
Score = 57.2 bits (137), Expect = 2e-09
Identities = 21/172 (12%), Positives = 42/172 (24%), Gaps = 28/172 (16%)
Query: 595 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT---- 650
+ N W +D + ++ + + G Y C S
Sbjct: 26 DAEAKNITWFKDGKM--IGFLTEDKKKWN----LGSNAKDPRGMYQCKGSQNKSKPLQVY 79
Query: 651 -----GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-------AGDKVRLECVAFG 698
+ K K ++ + + +G V L C
Sbjct: 80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ-- 137
Query: 699 YPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNV-KVEDQGEYICRASND 746
YP W + + + L++ ++E G Y+C
Sbjct: 138 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS 189
Score = 55.3 bits (132), Expect = 9e-09
Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 21/148 (14%)
Query: 154 LFICEAS------IQKLHYLLNDDRTYQYGMDIENPDKIPR---GPYFIKQPTDVVFDLS 204
++ C+ S +Q + + + D + ++ K G ++ +
Sbjct: 63 MYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY 122
Query: 205 KRSILND-ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-NLIIND 262
K SI + L+C YP W D I D + S +L + +
Sbjct: 123 KVSISGTTVILTCPQ--YPGSEILWQHND--------KNIGGDEDDKNIGSDEDHLSLKE 172
Query: 263 PRQVEDRGSYHCKASNKFGSIISESVQL 290
++E G Y C + + L
Sbjct: 173 FSELEQSGYYVCYPRGSKPEDANFYLYL 200
Score = 54.5 bits (130), Expect = 2e-08
Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 41/192 (21%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ L+C + WFK+ +I L++ + + G+ + R
Sbjct: 19 GSVLLTC---DAEAKNITWFKDG--------KMIGFLTEDKKKWNLGS------NAKDPR 61
Query: 270 GSYHCKASNKFGSIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPT----- 321
G Y CK S + ++ A + + G +
Sbjct: 62 GMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP 121
Query: 322 ---------------NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI-DAGN 365
YPG W + +ED + S + L ++ +G
Sbjct: 122 YKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGY 181
Query: 366 YSCNVQSKVSDT 377
Y C + +
Sbjct: 182 YVCYPRGSKPED 193
Score = 54.5 bits (130), Expect = 2e-08
Identities = 27/192 (14%), Positives = 53/192 (27%), Gaps = 41/192 (21%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
+ L+C + WFK+ +I L++ + + G+ + R
Sbjct: 19 GSVLLTC---DAEAKNITWFKDG--------KMIGFLTEDKKKWNLGS------NAKDPR 61
Query: 543 GSYHCKASNKFGSIISESVQLAFGF---IGEFNLKRAPEIGNQNWGKAMFCDPPT----- 594
G Y CK S + ++ A + + G +
Sbjct: 62 GMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP 121
Query: 595 ---------------NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI-DAGN 638
YPG W + +ED + S + L ++ +G
Sbjct: 122 YKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGY 181
Query: 639 YSCNVQSKVSDT 650
Y C + +
Sbjct: 182 YVCYPRGSKPED 193
Score = 39.1 bits (90), Expect = 0.003
Identities = 17/156 (10%), Positives = 35/156 (22%), Gaps = 27/156 (17%)
Query: 322 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT---- 377
+ N W +D + ++ + + G Y C S
Sbjct: 26 DAEAKNITWFKDGKM--IGFLTEDKKKWN----LGSNAKDPRGMYQCKGSQNKSKPLQVY 79
Query: 378 -----GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK-------AGDKVRLECVAFG 425
+ K K ++ + + +G V L C
Sbjct: 80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ-- 137
Query: 426 YPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNV 458
YP W + + + L++
Sbjct: 138 YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEF 173
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 57.3 bits (139), Expect = 3e-10
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA------YFENFNRILTIPNVKVEDQGEYI 740
G++V LEC + W + G + E IL I D EY
Sbjct: 22 GERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYS 80
Query: 741 CRASNDRSALESSVTISIQAEP 762
+ +S + +++ +++ P
Sbjct: 81 VMTTGGQS--SAKLSVDLKSGP 100
Score = 44.2 bits (105), Expect = 8e-06
Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 19/98 (19%)
Query: 189 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 248
G KQ D +R + L C + + +WFK I P
Sbjct: 7 GIMVTKQLEDTTAYCGER-----VELECEVSE-DDANVKWFKNG--------EEIIPGPK 52
Query: 249 KRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGS 282
R+ + LII D Y + S
Sbjct: 53 SRYRIRVEGKKHILIIEGA-TKADAAEYSVMTTGGQSS 89
Score = 44.2 bits (105), Expect = 8e-06
Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 19/98 (19%)
Query: 462 GPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSD 521
G KQ D +R + L C + + +WFK I P
Sbjct: 7 GIMVTKQLEDTTAYCGER-----VELECEVSE-DDANVKWFKNG--------EEIIPGPK 52
Query: 522 KRFTLSGGN----LIINDPRQVEDRGSYHCKASNKFGS 555
R+ + LII D Y + S
Sbjct: 53 SRYRIRVEGKKHILIIEGA-TKADAAEYSVMTTGGQSS 89
Score = 28.4 bits (64), Expect = 2.8
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 3/50 (6%)
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNV 370
N W ++ R + +G L + DA YS
Sbjct: 34 DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMT 83
Score = 28.4 bits (64), Expect = 2.8
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 3/50 (6%)
Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGA---LYFSALEQIDAGNYSCNV 643
N W ++ R + +G L + DA YS
Sbjct: 34 DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMT 83
>1sb2_B Rhodocetin beta subunit; C-type lectin, domain swapping, toxin;
1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB:
3gpr_B
Length = 129
Score = 57.8 bits (140), Expect = 3e-10
Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFW 83
+ RCP W + CY+ K KT +A+ C + L ++ A E F+ +
Sbjct: 1 DFRCPTTWSASKLYCYKPFKEK-KTWIEAERFCAKQAENGHLVSIGSAAEADFL-DLVIV 58
Query: 84 QDPQRRKWYF--GGTQQSPNLWVNEDGTNLN 112
+ ++++ G T+++ +G +++
Sbjct: 59 VNFDKQRYRAWTGLTERN---LKWTNGASVS 86
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 59.2 bits (143), Expect = 4e-10
Identities = 22/192 (11%), Positives = 46/192 (23%), Gaps = 29/192 (15%)
Query: 590 CDPPT---NYPGVNYYWARD-----YFPNFVEEDK-----RVFVSYDG--ALYFSALEQI 634
C YW ++ + R ++ AL
Sbjct: 16 CGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPS 75
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 694
D G Y C V D + + + + P + R+ C
Sbjct: 76 DEGTYECVVLKYEKDAFKREHLAEVTLSVKA-------DFPTPSISDFEIPTSNIRRIIC 128
Query: 695 VAFG-YPVPSYNWTRRGSPLPRNAYFENFN------RILTIPNVKVEDQGEYICRASNDR 747
G +P P +W G L + + + + + + ++C
Sbjct: 129 STSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGH 188
Query: 748 SALESSVTISIQ 759
+ + +
Sbjct: 189 LRVNQTFNWNTA 200
Score = 49.2 bits (117), Expect = 1e-06
Identities = 21/141 (14%), Positives = 34/141 (24%), Gaps = 23/141 (16%)
Query: 317 CDPPT---NYPGVNYYWARD-----YFPNFVEEDK-----RVFVSYDG--ALYFSALEQI 361
C YW ++ + R ++ AL
Sbjct: 16 CGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPS 75
Query: 362 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLEC 421
D G Y C V D + + + + P + R+ C
Sbjct: 76 DEGTYECVVLKYEKDAFKREHLAEVTLSVKA-------DFPTPSISDFEIPTSNIRRIIC 128
Query: 422 VAFG-YPVPSYNWTRRGSPLP 441
G +P P +W G L
Sbjct: 129 STSGGFPEPHLSWLENGEELN 149
Score = 46.9 bits (111), Expect = 6e-06
Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 24/140 (17%)
Query: 685 KAGDKVRLECV----AFGYPVPSYNWTRRGSPLPRNAYFENF------NRI--------- 725
+ + L C W + + + NR
Sbjct: 7 EVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLS 66
Query: 726 LTIPNVKVEDQGEYICRASNDRS---ALESSVTISIQAEPNFTIP-LTDKHMDNQADLTW 781
+ I ++ D+G Y C E +++ + +F P ++D +
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRI 126
Query: 782 TCEAFGV-PDVTYSWFRNGE 800
C G P+ SW NGE
Sbjct: 127 ICSTSGGFPEPHLSWLENGE 146
Score = 39.2 bits (91), Expect = 0.002
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 210 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
N + C GG+P P W + + + + + + +S L N
Sbjct: 122 NIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVS-SKLDFNM----TT 176
Query: 269 RGSYHCKASNKFGSI-ISESVQLA 291
S+ C + + + A
Sbjct: 177 NHSFMCLIKYGHLRVNQTFNWNTA 200
Score = 39.2 bits (91), Expect = 0.002
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 483 NDITLSCYA-GGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 541
N + C GG+P P W + + + + + + +S L N
Sbjct: 122 NIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVS-SKLDFNM----TT 176
Query: 542 RGSYHCKASNKFGSI-ISESVQLA 564
S+ C + + + A
Sbjct: 177 NHSFMCLIKYGHLRVNQTFNWNTA 200
Score = 36.9 bits (85), Expect = 0.013
Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 18/177 (10%)
Query: 211 DITLSCY----AGGYPNPSYEWFKEDYVQDRLVANLIDPLSD--KRFTLSGGN---LIIN 261
TLSC W KE + +++ ++ + R N ++I
Sbjct: 11 VATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVIL 70
Query: 262 DPRQVEDRGSYHCKASNKFGSIISES--VQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CD 318
+ D G+Y C ++ +F + C
Sbjct: 71 AL-RPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICS 129
Query: 319 PPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY--FSAL--EQIDAGNYSCNVQ 371
+P + W + + V + LY S L ++ C ++
Sbjct: 130 TSGGFPEPHLSWLENGEE-LNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIK 185
Score = 36.9 bits (85), Expect = 0.013
Identities = 24/177 (13%), Positives = 48/177 (27%), Gaps = 18/177 (10%)
Query: 484 DITLSCY----AGGYPNPSYEWFKEDYVQDRLVANLIDPLSD--KRFTLSGGN---LIIN 534
TLSC W KE + +++ ++ + R N ++I
Sbjct: 11 VATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVIL 70
Query: 535 DPRQVEDRGSYHCKASNKFGSIISES--VQLAFGFIGEFNLKRAPEIGNQNWGKAMF-CD 591
+ D G+Y C ++ +F + C
Sbjct: 71 AL-RPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICS 129
Query: 592 PPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALY--FSAL--EQIDAGNYSCNVQ 644
+P + W + + V + LY S L ++ C ++
Sbjct: 130 TSGGFPEPHLSWLENGEE-LNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIK 185
>1umr_A Convulxin alpha, CVX alpha; lectin, C-type lectin, platelet,
sugar-binding protein, activator, snake venom; 2.40A
{Crotalus durissus terrificus} SCOP: d.169.1.1 PDB:
1uos_A
Length = 135
Score = 57.5 bits (139), Expect = 5e-10
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQ 84
L CP W Y CYR DA+ C + L ++ A E F+ + Q
Sbjct: 2 LHCPSDWYYYDQHCYRIFNEE-MNWEDAEWFCTKQAKGAHLVSIKSAKEADFV-AWMVTQ 59
Query: 85 DPQRRKWYF-----GGTQQSPNLWVNEDGTNLN 112
+ + + ++ DG++++
Sbjct: 60 NIEESFSHVSIGLRVQNKEKQCSTKWSDGSSVS 92
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 56.8 bits (137), Expect = 6e-10
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 687 GDKVRLECVAFGYPVPSY-NWTRRGSPLP----------RNAYFENFNRILTIPNVKVED 735
G+K +++C P P W+ + + L + E LTI N+ D
Sbjct: 28 GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD 87
Query: 736 -QGEYICRASNDRSALESSVTISIQAEP 762
Q Y C A N + + + Q
Sbjct: 88 FQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
Score = 56.4 bits (136), Expect = 8e-10
Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 23/116 (19%)
Query: 457 NVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-EWFKEDYVQDRLVANL 515
+ + GP I ++ + C+ P P W ++ N+
Sbjct: 8 TLTVNGPPIISSTQTQHALHGEK-----GQIKCFIRSTPPPDRIAWSWKE--------NV 54
Query: 516 IDPLSDKRFTLS--------GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
++ + R+T+ L I++ + + + Y+C A N FGS +E ++L
Sbjct: 55 LESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRL 109
Score = 55.7 bits (134), Expect = 1e-09
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 23/112 (20%)
Query: 188 RGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSY-EWFKEDYVQDRLVANLIDPL 246
GP I ++ + C+ P P W ++ N+++
Sbjct: 12 NGPPIISSTQTQHALHGEK-----GQIKCFIRSTPPPDRIAWSWKE--------NVLESG 58
Query: 247 SDKRFTLS--------GGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+ R+T+ L I++ + + + Y+C A N FGS +E ++L
Sbjct: 59 TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRL 109
Score = 37.9 bits (88), Expect = 0.002
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 14/65 (21%)
Query: 414 GDKVRLECVAFGYPVPSY-NWTRRGSPLP----------RNAYFENFNRILTIPNVKMR- 461
G+K +++C P P W+ + + L + E LTI N+
Sbjct: 28 GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD 87
Query: 462 --GPY 464
Y
Sbjct: 88 FQTIY 92
>1uv0_A Pancreatitis-associated protein 1; lectin, C-type, secreted,
inflammatory response, acute phase; 1.78A {Homo sapiens}
SCOP: d.169.1.1 PDB: 2go0_A
Length = 149
Score = 57.1 bits (138), Expect = 9e-10
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 20 QTIDELELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIM 78
+ + +RCP+ Y CY SP K+ DA L C+ S +L +V E F+
Sbjct: 5 RELPSARIRCPKGSKAYGSHCYALFLSP-KSWTDADLACQKRPSGNLVSVLSGAEGSFVS 63
Query: 79 YQLFWQDPQRRKWYFGGT------QQSPNLWVNEDGTNLN 112
+ + G + + W +N
Sbjct: 64 SLVKSIGNSYSYVWIGLHDPTQGTEPNGEGWEWSSSDVMN 103
>1c3a_A Flavocetin-A: alpha subunit; C-type lectin-like domains, membrane
protein; 2.50A {Trimeresurus flavoviridis} SCOP:
d.169.1.1 PDB: 1v4l_A
Length = 135
Score = 56.3 bits (136), Expect = 1e-09
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
C W Y CY+ P K DA+ C+ S L ++ + E F+ + +
Sbjct: 4 CIPGWSAYDRYCYQAFSKP-KNWEDAESFCEEGVKTSHLVSIESSGEGDFVAQLVAEKIK 62
Query: 87 QRRKWY-FGGTQQS---PNLWVNEDGTNLN 112
++ G Q+ D +++N
Sbjct: 63 TSFQYVWIGLRIQNKEQQCRSEWSDASSVN 92
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.2 bits (148), Expect = 1e-09
Identities = 79/500 (15%), Positives = 139/500 (27%), Gaps = 207/500 (41%)
Query: 15 HSVFSQ--TIDELELRCPQHWVQ-YRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDA 71
H++ ++ ++ L + ++ Y + K P ++++ L
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITAR-IMAKRPFDKKSNSAL-----------FRAV 149
Query: 72 DEHGFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELDAAFLPEPADNVQRDYL 131
E + +F GG Q + + + E L +L Y
Sbjct: 150 GEGNAQLVAIF-----------GG-QGNTDDYFEE----LRDL---------------YQ 178
Query: 132 AYSFSQSLKRWGFERVTGMEPLL--FICEASIQKLHYLLND----DRTYQYGMDI----E 181
Y L+ I ++ + L L+ ++ + G++I E
Sbjct: 179 TY-----------------HVLVGDLIKFSA-ETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 182 NPDKIPRGPYFIKQPTDVVFDLSKRSILNDITL--------SCYAGGY-PNPSYEWFK-- 230
NP P Y + P + L I + + G+ P + K
Sbjct: 221 NPSNTPDKDYLLSIP--ISCPL--------IGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 231 EDYVQDRLVANLI---------DPLSDK----------RFTLSGGNLIINDPRQVEDRGS 271
+ Q + A I K R + N + P +ED
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL-PPSILED--- 326
Query: 272 YHCKASNKFG------SIISESVQLAFGFIGEFNLKRAPE-----IGNQNWGKAMFCDPP 320
N G SI + + + ++ + N P I N
Sbjct: 327 ---SLENNEGVPSPMLSISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVN---------- 372
Query: 321 TNYPGVNYYWARDYFPNFVEEDKRVFVSYDG---ALY--FSALEQIDAGNYSCNVQSKVS 375
N V VS G +LY L + A + + QS++
Sbjct: 373 ----------GAK---NLV-------VS--GPPQSLYGLNLTLRKAKAPS-GLD-QSRI- 407
Query: 376 DTGRNGPFFPLKVFPHSNFQQLKFPNNF-PKTFPEAP-------KAGDKV--RLECVAFG 425
P S ++LKF N F P +P A D + L
Sbjct: 408 --------------PFSE-RKLKFSNRFLPVA---SPFHSHLLVPASDLINKDLVKNNVS 449
Query: 426 YP-----VPSYNWTRRGSPL 440
+ +P Y+ T GS L
Sbjct: 450 FNAKDIQIPVYD-TFDGSDL 468
Score = 40.4 bits (94), Expect = 0.003
Identities = 59/367 (16%), Positives = 101/367 (27%), Gaps = 144/367 (39%)
Query: 63 SDLA-NV-NDADEH-----GFIMYQLFWQDPQRRKWYFGGTQQSPNLWVNEDGTNLNELD 115
S A +V N AD H GF + + +P +FGG E G + E
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG----------EKGKRIRE-- 1686
Query: 116 AAFLPEPADNVQRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHY-----LLND 170
+Y A F + + E + + LL+
Sbjct: 1687 -------------NYSAMIFETIV-----DGKLKTEKIFKEINEHSTSYTFRSEKGLLS- 1727
Query: 171 DRTYQYGMDIENPDKIPRGPYFIKQP----TDV-VF-DLSKRSILNDIT----------- 213
T + QP + F DL + ++
Sbjct: 1728 -AT-------QF-----------TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 214 -LSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIND-PRQVEDRGS 271
L+ A E V +V R G + PR R +
Sbjct: 1769 ALASLADVMS------I-ESLV--EVVF--------YR-----GMTMQVAVPRDELGRSN 1806
Query: 272 YHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWA 331
Y A N G + + Q A ++ E +G + G + VNY
Sbjct: 1807 YGMIAINP-GRVAASFSQEALQYVVE-------RVGKRT-GW--LVEI------VNY--- 1846
Query: 332 RDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPH 391
N E+++ + G L AL+ + NV + + + L+
Sbjct: 1847 -----N--VENQQYVAA--GDL--RALDTV------TNVLNFIKL--QKIDIIELQKSLS 1887
Query: 392 SNFQQLK 398
++++
Sbjct: 1888 --LEEVE 1892
Score = 31.2 bits (70), Expect = 1.6
Identities = 92/568 (16%), Positives = 163/568 (28%), Gaps = 197/568 (34%)
Query: 243 IDPLSDKRFTLSGGNL--IINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNL 300
+D S + TLS G+L ++ P + AS QL F
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPT------ASFFIAS-----------QLQEQF-----N 38
Query: 301 KRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFV--EEDKRVFVSYDGALYFSAL 358
K PE D PT + F +V + +D L L
Sbjct: 39 KILPEPTEGFAAD----DEPTTPAE---LVGK--FLGYVSSLVEPSKVGQFDQVL-NLCL 88
Query: 359 EQID----AGNYSCNVQSKVSDTGRNGPFFPLKV-------FPHSNFQQLKFPNNFPKTF 407
+ + GN ++ + + + +K + F
Sbjct: 89 TEFENCYLEGN---DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 408 PEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTI--PNVKMRGPYF 465
A G +L FG +G+ + YFE + V
Sbjct: 146 FRAVGEG-NAQL-VAIFG---------GQGNT---DDYFEELRDLYQTYHVLVGD----L 187
Query: 466 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK-------EDYVQDRLVANLIDP 518
IK + + +L + ++ + + G EW + +DY L++ P
Sbjct: 188 IKFSAETLSELIRTTLDAE---KVFTQGL--NILEWLENPSNTPDKDY----LLSI---P 235
Query: 519 LSDKRFTLSG----GNLIIN------DPRQVED--RGSYHCKAS-------------NKF 553
+S L G + ++ P ++ +G+ F
Sbjct: 236 IS---CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 554 GSIISESVQLAFGFIG-----EF-NLKRAPEIGNQNWGKAMFCDPPTNYP--GVNYYWAR 605
+ +++ + F FIG + N P I + P+ P +
Sbjct: 293 FVSVRKAITVLF-FIGVRCYEAYPNTSLPPSILEDSLENN--EGVPS--PMLSI-----S 342
Query: 606 DYFPNFVE-----------EDKRVFVS-YDG-----------ALY--FSALEQIDAGNYS 640
+ V+ K+V +S +G +LY L + A +
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS-G 401
Query: 641 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF-PKTFPEAP-------KAGDKV-- 690
+ QS++ P S ++LKF N F P +P A D +
Sbjct: 402 LD-QSRI---------------PFSE-RKLKFSNRFLPVA---SPFHSHLLVPASDLINK 441
Query: 691 RLECVAFGYP-----VPSYNWTRRGSPL 713
L + +P Y+ T GS L
Sbjct: 442 DLVKNNVSFNAKDIQIPVYD-TFDGSDL 468
Score = 29.2 bits (65), Expect = 7.7
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 53/154 (34%)
Query: 8 LFIFVSFHSVF-SQTIDELELRCPQHWVQYRDSCYRFVKSPLK-----TRN--DAKLNCK 59
L + FHS D + ++ V + ++ T + D ++
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFN-------AKDIQIPVYDTFDGSDLRVLSG 473
Query: 60 SLDSDLANVNDADEHGFIM-YQLFWQ-------------DPQRRKWYFGGTQQSPNL-WV 104
S+ + + I+ + W+ P GG L
Sbjct: 474 SISERIVDC--------IIRLPVKWETTTQFKATHILDFGP-------GGASGLGVLTHR 518
Query: 105 NEDGTNLNELDAAFL-PEPADNVQRDYLAYSFSQ 137
N+DGT + + A L P D+ Y F Q
Sbjct: 519 NKDGTGVRVIVAGTLDINPDDD-------YGFKQ 545
>1gz2_A Ovocleidin-17, OC-17 ovocleidin; structural protein, CTLD, eggshell
structural protein, phosphoprotein, sugar-binding
protein, glycoprotein; HET: SEP; 1.5A {Gallus gallus}
SCOP: d.169.1.1
Length = 142
Score = 56.4 bits (136), Expect = 1e-09
Identities = 19/95 (20%), Positives = 25/95 (26%), Gaps = 13/95 (13%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDP 86
C WV C F + + A+ C+ S LA V A E + +L
Sbjct: 5 CGPGWVPTPGGCLGFFSRE-LSWSRAESFCRRWGPGSHLAAVRSAAELRLL-AELLNASR 62
Query: 87 QRRKWYFGGT---------QQSPNLWVNEDGTNLN 112
G W DGT
Sbjct: 63 GGDGSGEGADGRVWIGLHRPAGSRSWRWSDGTAPR 97
>1ukm_A EMS16 A chain, EMS16 subunit A; domain swapping, C-type lectin,
toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP:
d.169.1.1 PDB: 1v7p_A*
Length = 134
Score = 55.9 bits (135), Expect = 2e-09
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y CY + P + +A+ C D L ++ +E F+ QL
Sbjct: 4 CPSDWTAYDQHCYLAIGEP-QNWYEAERFCTEQAKDGHLVSIQSREEGNFV-AQLVSGFM 61
Query: 87 QRRKWYF--GGT-----QQSPNLWVNEDGTNLN 112
R + Y G QQ W DG+ +
Sbjct: 62 HRSEIYVWIGLRDRREEQQCNPEWN--DGSKII 92
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP:
d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A*
1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1*
2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1*
1fif_A 1fih_A*
Length = 149
Score = 56.2 bits (136), Expect = 2e-09
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD 85
+L + + + K C L +A +A+E+ I Q+
Sbjct: 25 KLHAFSMGKKSGKKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAI------QE 77
Query: 86 PQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + G T + + ++ G L
Sbjct: 78 VAKTSAFLGITDEVTEGQFMYVTGGRLT 105
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 55.0 bits (132), Expect = 2e-09
Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVAN---LI 243
F+ +P D + IT S G P +WFK +V +
Sbjct: 5 GLFVMRPQDGEVTVGG-----SITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQL 59
Query: 244 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
D+ + L I D Q GSY C+ S K
Sbjct: 60 HDSYDRASKVYLFELHITDA-QPAFTGSYRCEVSTKDKFD 98
Score = 55.0 bits (132), Expect = 2e-09
Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 12/100 (12%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLVAN---LI 516
F+ +P D + IT S G P +WFK +V +
Sbjct: 5 GLFVMRPQDGEVTVGG-----SITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQL 59
Query: 517 DPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
D+ + L I D Q GSY C+ S K
Sbjct: 60 HDSYDRASKVYLFELHITDA-QPAFTGSYRCEVSTKDKFD 98
Score = 48.1 bits (114), Expect = 4e-07
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 21/104 (20%)
Query: 677 PKTFPEAPK-----AGDKVRLECVAFGYPV---PSYNWTR---------RGSPLPRNAYF 719
F P+ G + G + P W + G L + +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 720 ENFNRI----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
+ +++ L I + + G Y C S S+ +++
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>1j34_A Coagulation factor IX-binding protein A chain; magnesium ION,
calcium ION, GLA domain, protein binding/blood clotting
complex; HET: CGU; 1.55A {Trimeresurus flavoviridis}
SCOP: d.169.1.1 PDB: 1bj3_A* 1j35_A* 1x2t_A* 1x2w_A
1ixx_A 1y17_A 1wt9_A 1iod_A*
Length = 129
Score = 55.5 bits (134), Expect = 2e-09
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFI--MYQLFWQ 84
CP W Y CY+ K KT +DA+ C + L ++ A E F+ + Q
Sbjct: 2 CPSGWSSYEGHCYKPFKLY-KTWDDAERFCTEQAKGGHLVSIESAGEADFVAQLVTENIQ 60
Query: 85 DPQRRKWYFGGT---QQSPNLWVNEDGTNLN 112
+ + W G ++ DG++++
Sbjct: 61 NTKSYVW-IGLRVQGKEKQCSSEWSDGSSVS 90
>1hup_A Mannose-binding protein; alpha-helical coiled-coil, C-type lectin;
2.50A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Length = 141
Score = 55.4 bits (134), Expect = 2e-09
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
Q + + T K C + +A +A E+G I + +
Sbjct: 20 TFSLGKQVGNKFFLTNGEI-MTFEKVKALCVKFQASVATPRNAAENGAIQNLI------K 72
Query: 89 RKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + G T +++ +V+ G L
Sbjct: 73 EEAFLGITDEKTEGQFVDLTGNRLT 97
>1sb2_A Rhodocetin alpha subunit; C-type lectin, domain swapping, toxin;
1.90A {Calloselasma rhodostoma} SCOP: d.169.1.1 PDB:
3gpr_A
Length = 133
Score = 55.2 bits (133), Expect = 2e-09
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
CP W + CYR K KT +A+ C + + L ++ + E F+ + +
Sbjct: 2 CPDGWSSTKSYCYRPFKEK-KTWEEAERFCTEQEKEAHLVSMENRLEAVFV-DMVMENNF 59
Query: 87 QRRKWYF-----GGTQQSPNLWVNEDGTNLN 112
+ + + + + DG++++
Sbjct: 60 ENKIYRSWIGLKIENKGQRSNLEWSDGSSIS 90
>3gpr_C Rhodocetin subunit gamma; disulfide bond, lectin, secreted, toxin,
cell adhesion; 3.20A {Calloselasma rhodostoma}
Length = 134
Score = 55.2 bits (133), Expect = 2e-09
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCK--SLDSDLANVNDADEHGFIMYQLFWQ 84
C W Y CY+ P KT ++A+ C + L ++ E F+ QL
Sbjct: 1 FNCLPGWSAYDQHCYQAFNEP-KTWDEAERFCTEQAKRGHLVSIGSDGEADFV-AQLVTN 58
Query: 85 DPQRRKWYF--GG---TQQSPNLWVNEDGTNLN 112
+ +R + Y G ++ ++
Sbjct: 59 NIKRPELYVWIGLRDRRKEQQCSSEWSMSASII 91
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 55.5 bits (133), Expect = 3e-09
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 35/108 (32%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-------------------- 724
AG+K+RL+ G P P+ W + + + +
Sbjct: 31 VAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET 90
Query: 725 -------------ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
I T+ + ED+G Y N E V ++++
Sbjct: 91 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKN--PVGEDQVNLTVK 136
Score = 47.1 bits (111), Expect = 2e-06
Identities = 14/96 (14%), Positives = 21/96 (21%), Gaps = 24/96 (25%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN------------ 257
N + L G P P+ W K ++ A +
Sbjct: 34 NKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGR 93
Query: 258 -----------LIINDPRQVEDRGSYHCKASNKFGS 282
+ + ED G Y N G
Sbjct: 94 VRVETTKDRSIFTVEGAEK-EDEGVYTVTVKNPVGE 128
Score = 47.1 bits (111), Expect = 2e-06
Identities = 14/96 (14%), Positives = 21/96 (21%), Gaps = 24/96 (25%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN------------ 530
N + L G P P+ W K ++ A +
Sbjct: 34 NKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGR 93
Query: 531 -----------LIINDPRQVEDRGSYHCKASNKFGS 555
+ + ED G Y N G
Sbjct: 94 VRVETTKDRSIFTVEGAEK-EDEGVYTVTVKNPVGE 128
Score = 29.7 bits (66), Expect = 2.0
Identities = 8/47 (17%), Positives = 11/47 (23%), Gaps = 5/47 (10%)
Query: 759 QAEPNFTIPLTDKHMDNQ-----ADLTWTCEAFGVPDVTYSWFRNGE 800
Q P + + D L G P T W +
Sbjct: 11 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAIT 57
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense,
metalloprotein, sugar binding protein; 1.90A {Rattus
norvegicus} SCOP: d.169.1.1 h.1.1.1
Length = 168
Score = 55.9 bits (135), Expect = 3e-09
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 26 ELRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQD 85
+L + + + K C L +A +A+E+ I Q+
Sbjct: 44 KLHAFSMGKKSGKKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAI------QE 96
Query: 86 PQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ + G T + + ++ G L
Sbjct: 97 VAKTSAFLGITDEVTEGQFMYVTGGRLT 124
>2e3x_B Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 134
Score = 55.2 bits (133), Expect = 3e-09
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 13/95 (13%)
Query: 27 LRCPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL--DSDLANVNDADEHGFI--MYQLF 82
L CP YR CYR K KT A+ C + L ++ +E F+ +
Sbjct: 1 LDCPPDSSLYRYFCYRVFKEH-KTWEAAERFCMEHPNNGHLVSIESMEEAEFVAKLLSNT 59
Query: 83 WQDPQRRKWYFGGTQQSPN-----LWVNEDGTNLN 112
W G + W DG++++
Sbjct: 60 TGKFITHFW-IGLMIKDKEQECSSEWS--DGSSVS 91
>3bx4_A Aggretin alpha chain; toxin; 1.70A {Agkistrodon rhodostoma} PDB:
2vrp_A
Length = 136
Score = 54.8 bits (132), Expect = 3e-09
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLD--SDLANVNDADEHGFIMYQLFWQDP 86
C W Y CY+ KT ++A+ C++ + + LA++ E F+ + + +D
Sbjct: 5 CDFGWSPYDQHCYQAFNEQ-KTWDEAEKFCRAQENGAHLASIESNGEADFVSWLISQKDE 63
Query: 87 QRRKWYF--GGTQQSPN-----LWVNEDGTNLN 112
+ Y G Q+ W DG++++
Sbjct: 64 LADEDYVWIGLRAQNKEQQCSSEWS--DGSSVS 94
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 56.6 bits (136), Expect = 4e-09
Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 22/192 (11%)
Query: 591 DPPTNYPGVNYYWARDYFPNFV-------EEDKRVFVSYDGALYFSALEQIDAGNYS--- 640
P + + W V E + R Y G + I AG +
Sbjct: 29 FPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILR-DGITAGKAALRI 87
Query: 641 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-PEAPKAGDKVRLECVAFG- 698
NV SD+G+ +F F +LK + LEC + G
Sbjct: 88 HNVT--ASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGW 145
Query: 699 YPVPSYNWT-RRGSPLP--RNAYFENFNRILTIP---NVKVEDQGEYICRASNDRSALES 752
YP P W+ +G +P + + + ++ C + LE
Sbjct: 146 YPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEK 205
Query: 753 SVTISIQAEPNF 764
+ +ISI A+P F
Sbjct: 206 TASISI-ADPFF 216
Score = 50.5 bits (120), Expect = 5e-07
Identities = 30/201 (14%), Positives = 53/201 (26%), Gaps = 30/201 (14%)
Query: 211 DITLSCY---AGGYPNPSYEWFKED-------YVQDRLVANLIDPLSDKRFTLSGGN--- 257
D L C+ +W Y + V + R ++
Sbjct: 21 DADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITA 80
Query: 258 ----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 313
L I++ D G Y C + E + + G ++ G
Sbjct: 81 GKAALRIHNV-TASDSGKYLCYFQDGDF---YEKALVELKVAALGSDLHVDVKGYKDGGI 136
Query: 314 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA---LEQIDAGNYSCNV 370
+ C YP W+ + N + V G +A + SC +
Sbjct: 137 HLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTI 196
Query: 371 QSKVSDTGRNG------PFFP 385
+S + + PFF
Sbjct: 197 RSSLLGLEKTASISIADPFFR 217
Score = 50.5 bits (120), Expect = 5e-07
Identities = 30/201 (14%), Positives = 53/201 (26%), Gaps = 30/201 (14%)
Query: 484 DITLSCY---AGGYPNPSYEWFKED-------YVQDRLVANLIDPLSDKRFTLSGGN--- 530
D L C+ +W Y + V + R ++
Sbjct: 21 DADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITA 80
Query: 531 ----LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGK 586
L I++ D G Y C + E + + G ++ G
Sbjct: 81 GKAALRIHNV-TASDSGKYLCYFQDGDF---YEKALVELKVAALGSDLHVDVKGYKDGGI 136
Query: 587 AMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSA---LEQIDAGNYSCNV 643
+ C YP W+ + N + V G +A + SC +
Sbjct: 137 HLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTI 196
Query: 644 QSKVSDTGRNG------PFFP 658
+S + + PFF
Sbjct: 197 RSSLLGLEKTASISIADPFFR 217
Score = 50.5 bits (120), Expect = 6e-07
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 723 NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWT 782
L I NV D G+Y+C + ++ V + + A + D +
Sbjct: 82 KAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAA--LGSDLHVDVKGYKDGGIHLE 139
Query: 783 CEAFG-VPDVTYSWFRNG 799
C + G P W N
Sbjct: 140 CRSTGWYPQPQIQWSNNK 157
Score = 41.2 bits (96), Expect = 6e-04
Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 16/137 (11%)
Query: 318 DPPTNYPGVNYYWARDYFPNFV-------EEDKRVFVSYDGALYFSALEQIDAGNYS--- 367
P + + W V E + R Y G + I AG +
Sbjct: 29 FPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILR-DGITAGKAALRI 87
Query: 368 CNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-PEAPKAGDKVRLECVAFG- 425
NV SD+G+ +F F +LK + LEC + G
Sbjct: 88 HNVT--ASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGW 145
Query: 426 YPVPSYNWT-RRGSPLP 441
YP P W+ +G +P
Sbjct: 146 YPQPQIQWSNNKGENIP 162
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 56.0 bits (135), Expect = 6e-09
Identities = 21/164 (12%), Positives = 40/164 (24%), Gaps = 7/164 (4%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
C ++ + + + D ++ AG Y C +
Sbjct: 30 CQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYR 89
Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRR 709
+ L V L G+ + L C + P ++ +
Sbjct: 90 FRYSDTL-ELVVTGLYGKPFLSADRG------LVLMPGENISLTCSSAHIPFDRFSLAKE 142
Query: 710 GSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
G ++ V + G Y C +RS S
Sbjct: 143 GELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWS 186
Score = 47.2 bits (112), Expect = 6e-06
Identities = 17/127 (13%), Positives = 39/127 (30%), Gaps = 8/127 (6%)
Query: 685 KAGDKVRLEC-VAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYI 740
V+++C + + + R ++ + I ++ G Y
Sbjct: 21 PLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQ 80
Query: 741 CRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYSWF 796
C+ S T+ + + P +++ TC + +P +S
Sbjct: 81 CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLA 140
Query: 797 RNGELGH 803
+ GEL
Sbjct: 141 KEGELSL 147
Score = 42.2 bits (99), Expect = 2e-04
Identities = 23/187 (12%), Positives = 41/187 (21%), Gaps = 33/187 (17%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C ++ + + + D ++ AG Y C +
Sbjct: 30 CQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYR 89
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRR 436
+ L V L G+ + L C + P ++ +
Sbjct: 90 FRYSDTL-ELVVTGLYGKPFLSADRG------LVLMPGENISLTCSSAHIPFDRFSLAKE 142
Query: 437 GSPLPRNAYFENFNRILTIPNV--KMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGY 494
G ++ V + G Y CY G Y
Sbjct: 143 GELSLPQHQSGEHPANFSLGPVDLNVSGIY-----------------------RCY-GWY 178
Query: 495 PNPSYEW 501
Y W
Sbjct: 179 NRSPYLW 185
Score = 34.8 bits (80), Expect = 0.058
Identities = 25/185 (13%), Positives = 53/185 (28%), Gaps = 44/185 (23%)
Query: 412 KAGDKVRLEC-VAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKM------- 460
V+++C + + + R ++ + I ++
Sbjct: 21 PLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQ 80
Query: 461 ---RGPYFIKQPTD----VVFDLSKRSIL-----------NDITLSCYAGGYPNPSYEWF 502
R ++ + +D VV L + L +I+L+C + P +
Sbjct: 81 CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLA 140
Query: 503 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG----SIIS 558
KE + + F+L P + G Y C S S
Sbjct: 141 KEG---ELSLPQHQSGEHPANFSLG--------PVDLNVSGIYRCYGWYNRSPYLWSFPS 189
Query: 559 ESVQL 563
+++L
Sbjct: 190 NALEL 194
Score = 34.5 bits (79), Expect = 0.095
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 15/84 (17%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+I+L+C + P + KE + + F+L P + G
Sbjct: 122 NISLTCSSAHIPFDRFSLAKEG---ELSLPQHQSGEHPANFSLG--------PVDLNVSG 170
Query: 271 SYHCKASNKFG----SIISESVQL 290
Y C S S +++L
Sbjct: 171 IYRCYGWYNRSPYLWSFPSNALEL 194
Score = 31.0 bits (70), Expect = 1.2
Identities = 19/180 (10%), Positives = 44/180 (24%), Gaps = 32/180 (17%)
Query: 213 TLSC-YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+ C K ++ +D F + G
Sbjct: 27 KIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVID--------HMDANKAGR 78
Query: 272 YHCKASNKFG-SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT------NYP 324
Y C+ S++++L L P + M + + + P
Sbjct: 79 YQCQYRIGHYRFRYSDTLELV-----VTGLYGKPFLSADRGLVLMPGENISLTCSSAHIP 133
Query: 325 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC--------NVQSKVSD 376
+ A++ + + + ++ +G Y C + S S+
Sbjct: 134 FDRFSLAKE---GELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSN 190
>3alu_A Lectin CEL-IV, C-type; C-type lectin, raffinose, sugar binding
protein; HET: RAF; 1.65A {Cucumaria echinata} PDB:
3als_A* 3alt_A*
Length = 157
Score = 54.5 bits (131), Expect = 7e-09
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 19/102 (18%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSL-----------DSDLANVNDADEHGFI 77
CP W + C+R + ++A+ C+ LA+++ A+ F+
Sbjct: 5 CPPLWTGFNGKCFRLFHNH-LNFDNAENACRQFGLASCSGDELATGHLASIHSAESQAFL 63
Query: 78 ------MYQLFWQDPQRRKWYFGGT-QQSPNLWVNEDGTNLN 112
+ Y G + + DG++++
Sbjct: 64 TELVKTSLPDLITGGWAPQVYIGMKVGSTNSDQTWTDGSSVD 105
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 56.2 bits (135), Expect = 8e-09
Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEA 785
L +P +++E+ GEY C + +V + + A P + L D+ + + + CE+
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRL-LLDQVGMKENEDKYMCES 142
Query: 786 FGV--PDVTYSWFRNGELGHQMTDL 808
G + +W + + ++
Sbjct: 143 SGFYPEAINITWEKQTQKFPHPIEI 167
Score = 36.2 bits (83), Expect = 0.028
Identities = 30/197 (15%), Positives = 57/197 (28%), Gaps = 35/197 (17%)
Query: 601 YYWARDYFPNFVEE---DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF 657
+ + D+ F S D +L ++ +AG Y C V
Sbjct: 56 FEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVT----------- 104
Query: 658 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWTRRGSPLPR 715
PLK + + P + + ++ + C + G YP + W ++ P
Sbjct: 105 PLKAQGTVQLEVVASPASRL-LLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPH 163
Query: 716 NAYFEN--------------FNR--ILTIPNVKVEDQGEYICRASND--RSALESSVTIS 757
FN L + + + + Y C + + L S+ T++
Sbjct: 164 PIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLT 223
Query: 758 IQAEPNFTIPLTDKHMD 774
TD
Sbjct: 224 AARHSLSETEKTDNFSA 240
Score = 32.3 bits (73), Expect = 0.51
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 17/122 (13%)
Query: 328 YYWARDYFPNFVEE---DKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF 384
+ + D+ F S D +L ++ +AG Y C V
Sbjct: 56 FEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVT----------- 104
Query: 385 PLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVP-SYNWTRRGSPLPR 442
PLK + + P + + ++ + C + G YP + W ++ P
Sbjct: 105 PLKAQGTVQLEVVASPASRL-LLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPH 163
Query: 443 NA 444
Sbjct: 164 PI 165
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 54.5 bits (131), Expect = 9e-09
Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 28/132 (21%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRG--------------SPLPRNAYFENFNRILTIPNVK 732
V P+ W ++ S Y + + LTI N+
Sbjct: 10 YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 733 VEDQGEYICRASNDRSALESSVTISIQA---EPNFTIPLTDKHMDNQADLTWTCEAFGVP 789
D+ EY + N + + +P ++ T TCE
Sbjct: 69 SSDEDEYEMESPNITD--TMKFFLYVLEMVSKPMIYW--------ECSNATLTCEVLEGT 118
Query: 790 DVTYSWFRNGEL 801
DV ++ E
Sbjct: 119 DVELKLYQGKEH 130
Score = 53.8 bits (129), Expect = 2e-08
Identities = 20/152 (13%), Positives = 35/152 (23%), Gaps = 27/152 (17%)
Query: 606 DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS 665
F +F +++ + G+L L D Y + F L V
Sbjct: 44 RAFSSF--KNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTM-----KFFLYVLE-- 94
Query: 666 NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI 725
+ P L C + L R
Sbjct: 95 -----------MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL-------RSLRQ 136
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTIS 757
T+ + + C+A N S ++
Sbjct: 137 KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN 168
Score = 41.1 bits (96), Expect = 4e-04
Identities = 25/170 (14%), Positives = 47/170 (27%), Gaps = 47/170 (27%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRG--------------SPLPRNAYFENFNRILTIPNVK 459
V P+ W ++ S Y + + LTI N+
Sbjct: 10 YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 460 MR--GPYFIKQPTDV--------VFD-LSKRSI---LNDITLSCYAGGYPNPSYEWFKED 505
Y ++ P V + +SK I ++ TL+C + + ++
Sbjct: 69 SSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQ-- 126
Query: 506 YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 555
K S ++ + R + CKA N+
Sbjct: 127 ---------------GKEHLRSLRQKTMS-YQWTNLRAPFKCKAVNRVSQ 160
Score = 35.7 bits (82), Expect = 0.028
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 18/73 (24%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
++ TL+C + + ++ K S ++ + R
Sbjct: 106 SNATLTCEVLEGTDVELKLYQ-----------------GKEHLRSLRQKTMS-YQWTNLR 147
Query: 270 GSYHCKASNKFGS 282
+ CKA N+
Sbjct: 148 APFKCKAVNRVSQ 160
Score = 34.9 bits (80), Expect = 0.045
Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 35/174 (20%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR----FTLSGGNLIINDPRQV 266
++T + P W K+ L + S + G+L I +
Sbjct: 12 NVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS- 69
Query: 267 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-----RAPEIGNQNWGKAMFCDPPT 321
D Y ++ N ++ +F L P I + + C+
Sbjct: 70 SDEDEYEMESPNITDTM-------------KFFLYVLEMVSKPMIYWECSNATLTCEVL- 115
Query: 322 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 375
V + + ++ +SY + C ++VS
Sbjct: 116 EGTDVELKLYQG--KEHLRSLRQKTMSYQ--------WTNLRAPFKCKAVNRVS 159
Score = 34.9 bits (80), Expect = 0.045
Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 35/174 (20%)
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKR----FTLSGGNLIINDPRQV 539
++T + P W K+ L + S + G+L I +
Sbjct: 12 NVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS- 69
Query: 540 EDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLK-----RAPEIGNQNWGKAMFCDPPT 594
D Y ++ N ++ +F L P I + + C+
Sbjct: 70 SDEDEYEMESPNITDTM-------------KFFLYVLEMVSKPMIYWECSNATLTCEVL- 115
Query: 595 NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVS 648
V + + ++ +SY + C ++VS
Sbjct: 116 EGTDVELKLYQG--KEHLRSLRQKTMSYQ--------WTNLRAPFKCKAVNRVS 159
Score = 34.1 bits (78), Expect = 0.092
Identities = 16/132 (12%), Positives = 30/132 (22%), Gaps = 25/132 (18%)
Query: 333 DYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHS 392
F +F +++ + G+L L D Y + F L V
Sbjct: 44 RAFSSF--KNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTM-----KFFLYVLE-- 94
Query: 393 NFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI 452
+ P L C + L +
Sbjct: 95 -----------MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-----QKT 138
Query: 453 LTIPNVKMRGPY 464
++ +R P+
Sbjct: 139 MSYQWTNLRAPF 150
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 55.1 bits (132), Expect = 9e-09
Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 11/133 (8%)
Query: 681 PEAP--KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFN-RILTIPNVKVEDQG 737
P + G + L C + L RN + +++ E +
Sbjct: 9 PRVAFVERGGSLWLNCSTNCPRPERGGLE---TSLRRNGTQRGLRWLARQLVDIR-EPET 64
Query: 738 EYICRASNDRSALESSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGV---PDVTY 793
+ +C R L++ I P + + T +C G +T
Sbjct: 65 QPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTL 124
Query: 794 SWFRNGELGHQMT 806
+ R + + +
Sbjct: 125 TLLRGAQELIRRS 137
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 56.8 bits (137), Expect = 1e-08
Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 33/228 (14%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
C + N+ ++ + R+F + S + AGNY+C S
Sbjct: 45 CHYRHRFN--NFMLYKEDRIHIPIFHGRIF---QESFNMSPVTTAHAGNYTCRGSHPHSP 99
Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSY 704
TG + P SN + N K A K+G++V L+C + +
Sbjct: 100 TGWSAP---------SNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFE-HF 149
Query: 705 NWTRRGSPLP-----RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS-----V 754
+ G + +I + + G Y C S + + S +
Sbjct: 150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPL 209
Query: 755 TISIQAEPNFTI--PLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGE 800
I + + +T +C + D Y R G
Sbjct: 210 DIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYD-MYHLSREGG 256
Score = 47.9 bits (114), Expect = 6e-06
Identities = 41/262 (15%), Positives = 73/262 (27%), Gaps = 44/262 (16%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPYF------ 465
G V L C + ++ + + F + V G Y
Sbjct: 38 GGHVTLRCHY-RHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHP 96
Query: 466 -----IKQPTDVV-----FDLSKRSILND----------ITLSCYAGGYPNPSYEWFKED 505
P++ V + K S+L + L C+ + KE
Sbjct: 97 HSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCW-SDIMFEHFFLHKEG 155
Query: 506 YVQD--RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG----SIISE 559
+D RLV + D +S F++ P + G+Y C S S S+
Sbjct: 156 ISKDPSRLVGQIHDGVSKANFSIG--------PMMLALAGTYRCYGSVTHTPYQLSAPSD 207
Query: 560 SVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVF 619
+ + E A G+++ + Y+ +R+ +
Sbjct: 208 PLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRK 267
Query: 620 VSYDGALYFSALEQIDAGNYSC 641
V+ F G Y C
Sbjct: 268 VNRTFQADFPLGPATHGGTYRC 289
Score = 47.2 bits (112), Expect = 1e-05
Identities = 48/299 (16%), Positives = 81/299 (27%), Gaps = 45/299 (15%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 544
+TL C+ + ++ +KED + + + F +S P G+
Sbjct: 41 VTLRCH-YRHRFNNFMLYKED---RIHIPIFHGRIFQESFNMS--------PVTTAHAGN 88
Query: 545 YHCKASNKF----GSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT-----N 595
Y C+ S+ S S V + R P + + +
Sbjct: 89 YTCRGSHPHSPTGWSAPSNPVVIMVTG-----NHRKPSLLAHPGPLVKSGERVILQCWSD 143
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS--ALEQIDAGNYSCNVQSKVSDTGRN 653
+++ ++ FS + AG Y C + +
Sbjct: 144 IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLS 203
Query: 654 GPFFPLK--VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS 711
P PL V L +AG+ V L C + Y+ +R G
Sbjct: 204 APSDPLDIVVTGPYEKPSLSAQPG------PKVQAGESVTLSCSSRSSYD-MYHLSREGG 256
Query: 712 PLP---RNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS-----VTISIQAEP 762
N P G Y C S S E S + +S+ P
Sbjct: 257 AHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315
Score = 44.5 bits (105), Expect = 7e-05
Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 23/128 (17%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746
G V L C + ++ + + F + V G Y CR S+
Sbjct: 38 GGHVTLRCHY-RHRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHP 96
Query: 747 RS---------ALESSVTI-----SIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVT 792
S + VT S+ A P + ++ + C + +
Sbjct: 97 HSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGER-------VILQCWS-DIMFEH 148
Query: 793 YSWFRNGE 800
+ + G
Sbjct: 149 FFLHKEGI 156
Score = 41.4 bits (97), Expect = 8e-04
Identities = 28/163 (17%), Positives = 50/163 (30%), Gaps = 15/163 (9%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQD--RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ L C+ + KE +D RLV + D +S F++ P +
Sbjct: 136 VILQCW-SDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIG--------PMMLALA 186
Query: 270 GSYHCKASNKFG----SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPG 325
G+Y C S S S+ + + E A G+++ +
Sbjct: 187 GTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSY 246
Query: 326 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
Y+ +R+ + V+ F G Y C
Sbjct: 247 DMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRC 289
Score = 34.5 bits (79), Expect = 0.12
Identities = 47/289 (16%), Positives = 85/289 (29%), Gaps = 66/289 (22%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C + N+ ++ + R+F + S + AGNY+C S
Sbjct: 45 CHYRHRFN--NFMLYKEDRIHIPIFHGRIF---QESFNMSPVTTAHAGNYTCRGSHPHSP 99
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSY 431
TG + P SN + N K A K+G++V L+C + +
Sbjct: 100 TGWSAP---------SNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFE-HF 149
Query: 432 NWTRRGSPLP-----RNAYFENFNRILTIPNV-------------KMRGPYFIKQPTD-- 471
+ G + +I + PY + P+D
Sbjct: 150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPL 209
Query: 472 --VVFDLSKRSIL-----------NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDP 518
VV ++ L +TLSC + + Y +E +R + +
Sbjct: 210 DIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSYD-MYHLSREGGAHERRLPAVRKV 268
Query: 519 LSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG----SIISESVQL 563
+ G G+Y C S + S S+ + +
Sbjct: 269 NRTFQADFPLGP--------ATHGGTYRCFGSFRHSPYEWSDPSDPLLV 309
Score = 31.0 bits (70), Expect = 1.5
Identities = 38/244 (15%), Positives = 68/244 (27%), Gaps = 37/244 (15%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+TL C+ + ++ +KED + + + F +S P G+
Sbjct: 41 VTLRCH-YRHRFNNFMLYKED---RIHIPIFHGRIFQESFNMS--------PVTTAHAGN 88
Query: 272 YHCKASNKF----GSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT-----N 322
Y C+ S+ S S V + R P + + +
Sbjct: 89 YTCRGSHPHSPTGWSAPSNPVVIMVT-----GNHRKPSLLAHPGPLVKSGERVILQCWSD 143
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFS--ALEQIDAGNYSCNVQSKVSDTGRN 380
+++ ++ FS + AG Y C + +
Sbjct: 144 IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLS 203
Query: 381 GPFFPLK--VFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGS 438
P PL V L +AG+ V L C + Y+ +R G
Sbjct: 204 APSDPLDIVVTGPYEKPSLSAQPG------PKVQAGESVTLSCSSRSSYD-MYHLSREGG 256
Query: 439 PLPR 442
R
Sbjct: 257 AHER 260
>1fvu_A Botrocetin alpha chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_B
1u0n_B 1u0o_A
Length = 133
Score = 53.2 bits (128), Expect = 1e-08
Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKS--LDSDLANVNDADEHGFIMYQLFWQDP 86
CP W Y +CY+F + DA+ C L ++ + + L ++
Sbjct: 2 CPSGWSSYEGNCYKFFQQK-MNWADAERFCSEQAKGGHLVSIKIYSKEKDFVGDLVTKNI 60
Query: 87 QRRKWYF-----GGTQQSPNLWVNEDGTNLN 112
Q Y ++ DG++++
Sbjct: 61 QSSDLYAWIGLRVENKEKQCSSEWSDGSSVS 91
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 56.8 bits (137), Expect = 1e-08
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 677 PKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF---NRILTIPNVKV 733
K GD + + C + + + + N L V+V
Sbjct: 251 YKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQV 310
Query: 734 EDQGEYICRASNDRSALESSVTISIQAEPNFTIP 767
ED G Y C A ++++ ++
Sbjct: 311 EDGGVYTCYAMG--ETFNETLSVELKVYNFTLHG 342
Score = 45.6 bits (108), Expect = 4e-05
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ +T+ C + V + S+ ++ G+L QVED
Sbjct: 262 DTLTIRCDTKQQGMTKVWV----SPSNEQVLS---QGSNGSVSVRNGDLFFKKV-QVEDG 313
Query: 270 GSYHCKASNKFGS 282
G Y C A + +
Sbjct: 314 GVYTCYAMGETFN 326
Score = 45.6 bits (108), Expect = 4e-05
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
+ +T+ C + V + S+ ++ G+L QVED
Sbjct: 262 DTLTIRCDTKQQGMTKVWV----SPSNEQVLS---QGSNGSVSVRNGDLFFKKV-QVEDG 313
Query: 543 GSYHCKASNKFGS 555
G Y C A + +
Sbjct: 314 GVYTCYAMGETFN 326
Score = 32.5 bits (74), Expect = 0.54
Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 5/66 (7%)
Query: 404 PKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF---NRILTIPNVKM 460
K GD + + C + + + + N L V++
Sbjct: 251 YKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQV 310
Query: 461 --RGPY 464
G Y
Sbjct: 311 EDGGVY 316
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 51.9 bits (124), Expect = 3e-08
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRR--------GSPLPRNAYFENFNRI-----LTIPNVK 732
G + L+CV S W P+ +N+ ++ + +T+PNV
Sbjct: 15 EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVT 74
Query: 733 VEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTDKH 772
++D+G Y C +D S V + + A H
Sbjct: 75 LQDEGVYKCLHYSD-SVSTKEVKVIVLATMKGEFCRYPSH 113
Score = 46.1 bits (109), Expect = 3e-06
Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-----SGGNLIINDPRQ 265
+TL C N S +W + N L + ++ L + ++ + +
Sbjct: 18 TLTLKCVTSLRKNSSLQWLTPS--GFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV-T 74
Query: 266 VEDRGSYHCKASNKFGSIISESVQL 290
++D G Y C + S+ ++ V++
Sbjct: 75 LQDEGVYKCLHYS--DSVSTKEVKV 97
Score = 46.1 bits (109), Expect = 3e-06
Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTL-----SGGNLIINDPRQ 538
+TL C N S +W + N L + ++ L + ++ + +
Sbjct: 18 TLTLKCVTSLRKNSSLQWLTPS--GFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNV-T 74
Query: 539 VEDRGSYHCKASNKFGSIISESVQL 563
++D G Y C + S+ ++ V++
Sbjct: 75 LQDEGVYKCLHYS--DSVSTKEVKV 97
Score = 30.3 bits (68), Expect = 1.0
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 15/67 (22%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRR--------GSPLPRNAYFENFNRI-----LTIPNVK 459
G + L+CV S W P+ +N+ ++ + +T+PNV
Sbjct: 15 EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVT 74
Query: 460 MR--GPY 464
++ G Y
Sbjct: 75 LQDEGVY 81
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 56.4 bits (136), Expect = 3e-08
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKVEDQGEYI 740
G C P W + L ++ + + LTI VK +D+GEY
Sbjct: 495 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 554
Query: 741 CRASNDRSALESSVTISI 758
RA N E V +++
Sbjct: 555 VRAKNSYGTKEEIVFLNV 572
Score = 49.1 bits (117), Expect = 4e-06
Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 23/159 (14%)
Query: 135 FSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIK 194
S+K + PL I ++ L + + + D+ P FI
Sbjct: 434 IRDSIKTKYDAWPEPLPPLGRI--SNYSSLRKHRPQEYS----IRDAFWDRSEAQPRFIV 487
Query: 195 QPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS 254
+P C P W K+D + +
Sbjct: 488 KPYGTEVGEG-----QSANFYCRVIASSPPVVTWHKDD--------RELKQSVKYMKRYN 534
Query: 255 GGN--LIINDPRQVEDRGSYHCKASNKFGSIISESVQLA 291
G + L IN + +D+G Y +A N +G+ E V L
Sbjct: 535 GNDYGLTINRVKG-DDKGEYTVRAKNSYGT-KEEIVFLN 571
Score = 48.3 bits (115), Expect = 9e-06
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGN--LIINDPRQVE 540
C P W K+D + +G + L IN + +
Sbjct: 498 QSANFYCRVIASSPPVVTWHKDD--------RELKQSVKYMKRYNGNDYGLTINRVKG-D 548
Query: 541 DRGSYHCKASNKFGSIISESVQLA 564
D+G Y +A N +G+ E V L
Sbjct: 549 DKGEYTVRAKNSYGT-KEEIVFLN 571
Score = 32.1 bits (73), Expect = 0.74
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 412 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYF----ENFNRILTIPNVKM--RGPYF 465
G C P W + L ++ + + LTI VK +G Y
Sbjct: 495 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 554
Query: 466 IK 467
++
Sbjct: 555 VR 556
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 54.9 bits (131), Expect = 5e-08
Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 6/126 (4%)
Query: 685 KAGDKVRLECVAF-GYPVPSYNWTRRGSPLPRNAY-FENFNRILTIPNVKVEDQGEYICR 742
GD V L C + +W R + + R L + +V++ D G Y C
Sbjct: 19 LPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCY 78
Query: 743 ASNDRSALESSVTISIQAEPNF-TIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGEL 801
+ +V + + P + K + W +
Sbjct: 79 RAGR---PAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQ 135
Query: 802 GHQMTD 807
D
Sbjct: 136 NSPAED 141
Score = 32.5 bits (73), Expect = 0.53
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C +W + L +++ D+GNYSC + +
Sbjct: 28 CPGVEPEDNATVHWVLRKPA--AGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAG 85
Query: 377 T 377
T
Sbjct: 86 T 86
Score = 32.5 bits (73), Expect = 0.53
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
C +W + L +++ D+GNYSC + +
Sbjct: 28 CPGVEPEDNATVHWVLRKPA--AGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAG 85
Query: 650 T 650
T
Sbjct: 86 T 86
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 55.1 bits (133), Expect = 6e-08
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 4/101 (3%)
Query: 664 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF- 722
+ F + K G V+ C A G P P+ W L
Sbjct: 377 PNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLT 436
Query: 723 ---NRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
+ L + +V+D G Y+C A+N + +++
Sbjct: 437 VFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 46.6 bits (111), Expect = 2e-05
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVED 268
+ + C A G P P+ W +L+ S+ R T G L + QV+D
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPR-------KHLVSAKSNGRLTVFPDGTLEVRYA-QVQD 452
Query: 269 RGSYHCKASNKFGSIISESVQL 290
G+Y C A+N G+ S L
Sbjct: 453 NGTYLCIAANAGGN-DSMPAHL 473
Score = 46.6 bits (111), Expect = 2e-05
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFT-LSGGNLIINDPRQVED 541
+ + C A G P P+ W +L+ S+ R T G L + QV+D
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPR-------KHLVSAKSNGRLTVFPDGTLEVRYA-QVQD 452
Query: 542 RGSYHCKASNKFGSIISESVQL 563
G+Y C A+N G+ S L
Sbjct: 453 NGTYLCIAANAGGN-DSMPAHL 473
Score = 31.6 bits (72), Expect = 1.1
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 6/80 (7%)
Query: 391 HSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF- 449
+ F + K G V+ C A G P P+ W L
Sbjct: 377 PNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLT 436
Query: 450 ---NRILTIPNVKMR--GPY 464
+ L + +++ G Y
Sbjct: 437 VFPDGTLEVRYAQVQDNGTY 456
Score = 29.7 bits (67), Expect = 4.1
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 339 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ 371
+ + R+ V DG L + D G Y C
Sbjct: 429 AKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAA 461
Score = 29.7 bits (67), Expect = 4.1
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 612 VEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ 644
+ + R+ V DG L + D G Y C
Sbjct: 429 AKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAA 461
>1wk1_A Hypothetical protein YK1067A12; lectin C-type domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Caenorhabditis elegans} SCOP:
d.169.1.1
Length = 150
Score = 50.6 bits (121), Expect = 1e-07
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 6/79 (7%)
Query: 35 QYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFG 94
+ A+ C S LA+ D++ F +++ G
Sbjct: 5 SSGVKFLTVNDDI-LSMPQARNFCASAGGYLADDLGDDKNNFYSSIA-----ANTQFWIG 58
Query: 95 GTQQSPNLWVNEDGTNLNE 113
+ S + + G +N
Sbjct: 59 LFKNSDGQFYWDRGQGINP 77
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 54.0 bits (129), Expect = 2e-07
Identities = 27/208 (12%), Positives = 47/208 (22%), Gaps = 32/208 (15%)
Query: 592 PPTNYPGVNYYWARDYFP----NFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKV 647
N P N W P N E F + F + G + +
Sbjct: 99 KVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAID----- 153
Query: 648 SDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWT 707
P F ++ AG +C A G V
Sbjct: 154 EVKVLGHPCTRTPHFLRIQNVEVN--------------AGQFATFQCSAIGRTVAGDRLW 199
Query: 708 RRGSPLP-------RNAYFENFNRILTIPNVKVEDQGEYICRASNDR-SALESSVTISIQ 759
+G + + F + N D G+Y C + + + + ++
Sbjct: 200 LQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259
Query: 760 AEPNFTIPLT-DKHMDNQADLTWTCEAF 786
P P + +
Sbjct: 260 EPPVPIAPPQLASVGATYLWIQLNANSI 287
Score = 49.0 bits (116), Expect = 6e-06
Identities = 30/177 (16%), Positives = 49/177 (27%), Gaps = 24/177 (13%)
Query: 407 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRG-------------SPLPRNAYFENFNRI- 452
++ + + P+ + W G S N Y F I
Sbjct: 84 SSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVIT 143
Query: 453 ------LTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY 506
L I VK+ G + P + + + T C A G + +
Sbjct: 144 SGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGI 203
Query: 507 VQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
I S +RF + + + D G Y C + G IS +L
Sbjct: 204 DVRDAPLKEIKVTSSRRFI---ASFNVVNT-TKRDAGKYRCMIRTEGGVGISNYAEL 256
Score = 46.7 bits (110), Expect = 3e-05
Identities = 14/132 (10%), Positives = 30/132 (22%), Gaps = 9/132 (6%)
Query: 680 FPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEY 739
++ + + P+ + W G P E L I
Sbjct: 84 SSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAE-----LAISTFWPNFYQVI 138
Query: 740 ICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQA----DLTWTCEAFGVPDVTYSW 795
++ + + + P P + + + T+ C A G
Sbjct: 139 FEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRL 198
Query: 796 FRNGELGHQMTD 807
+ G
Sbjct: 199 WLQGIDVRDAPL 210
Score = 39.8 bits (92), Expect = 0.004
Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 9/122 (7%)
Query: 169 NDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW 228
+ + Y +++ + +V + + T C A G
Sbjct: 144 SGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQ-----FATFQCSAIGRTVAGDRL 198
Query: 229 FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIISESV 288
+ + I S +RF + + + D G Y C + G IS
Sbjct: 199 WLQGIDVRDAPLKEIKVTSSRRFI---ASFNVVNT-TKRDAGKYRCMIRTEGGVGISNYA 254
Query: 289 QL 290
+L
Sbjct: 255 EL 256
Score = 34.0 bits (77), Expect = 0.21
Identities = 14/166 (8%), Positives = 35/166 (21%), Gaps = 14/166 (8%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
+ + P + W L+ F + +I +G
Sbjct: 93 LLNVYVKVNNGPLGNPIWNISGDPTRT---WNRAELAISTFWPNFYQVIFEV-ITSGHQG 148
Query: 271 SYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW 330
+ + + G +
Sbjct: 149 YLAIDEVK-----VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTV---AGDRLWL 200
Query: 331 ARDYFPNFVEEDKRVFVSYD--GALYFSALEQIDAGNYSCNVQSKV 374
+ ++ +V S + + DAG Y C ++++
Sbjct: 201 QGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEG 246
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 51.8 bits (123), Expect = 2e-07
Identities = 20/138 (14%), Positives = 36/138 (26%), Gaps = 13/138 (9%)
Query: 626 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 685
L D G+Y V R N + F E +
Sbjct: 84 LSIGDARMEDTGSYFFRV-------ERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLE 136
Query: 686 AGDKVRLECV----AFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYIC 741
+G RL C P +++WT + LT+ + C
Sbjct: 137 SGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPET--TRSSELTLTPRPEDHGTNLTC 194
Query: 742 RASNDRSALESSVTISIQ 759
+ + + + T+ +
Sbjct: 195 QMKRQGAQVTTERTVQLN 212
Score = 41.4 bits (96), Expect = 5e-04
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 695 VAFGYPVPSYNWTRRG-SPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDR----SA 749
VA P +G L + +N + L+I + ++ED G Y R R S
Sbjct: 54 VATNNPDRRVKPETQGRFRLLGDVQKKNCS--LSIGDARMEDTGSYFFRVERGRDVKYSY 111
Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCE----AFGVPDVTYSWFRNG 799
++ + + + A + +++ +C P +T+SW N
Sbjct: 112 QQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA 165
Score = 34.0 bits (77), Expect = 0.12
Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 32/187 (17%)
Query: 211 DITLSCY-----AGGYPNPSY--EWFKEDY--VQDRLVAN-----LIDPLSDKRFTLSG- 255
+ + C Y +P WF++ +VA + P + RF L G
Sbjct: 17 CVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGD 76
Query: 256 -----GNLIINDPRQVEDRGSYHCKASNKFG---SIISESVQLAFGFIGEFNLKRAPEIG 307
+L I D ++ED GSY + S + L + E E
Sbjct: 77 VQKKNCSLSIGD-ARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPL 135
Query: 308 NQNWGKAMFCDPPTNYPG---VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG 364
+ C P + + + W + E + L + +
Sbjct: 136 ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE-----TTRSSELTLTPRPEDHGT 190
Query: 365 NYSCNVQ 371
N +C ++
Sbjct: 191 NLTCQMK 197
Score = 34.0 bits (77), Expect = 0.12
Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 32/187 (17%)
Query: 484 DITLSCY-----AGGYPNPSY--EWFKEDY--VQDRLVAN-----LIDPLSDKRFTLSG- 528
+ + C Y +P WF++ +VA + P + RF L G
Sbjct: 17 CVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGD 76
Query: 529 -----GNLIINDPRQVEDRGSYHCKASNKFG---SIISESVQLAFGFIGEFNLKRAPEIG 580
+L I D ++ED GSY + S + L + E E
Sbjct: 77 VQKKNCSLSIGD-ARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPL 135
Query: 581 NQNWGKAMFCDPPTNYPG---VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAG 637
+ C P + + + W + E + L + +
Sbjct: 136 ESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE-----TTRSSELTLTPRPEDHGT 190
Query: 638 NYSCNVQ 644
N +C ++
Sbjct: 191 NLTCQMK 197
Score = 33.7 bits (76), Expect = 0.16
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 14/79 (17%)
Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSY 272
+L P ++ W T L + PR + +
Sbjct: 146 SLPGSCEAGPPLTFSWTGNAL------------SPLDPETTRSSELTLT-PRPEDHGTNL 192
Query: 273 HCKASNKFGSIISE-SVQL 290
C+ + + +E +VQL
Sbjct: 193 TCQMKRQGAQVTTERTVQL 211
Score = 33.7 bits (76), Expect = 0.16
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 14/79 (17%)
Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSY 545
+L P ++ W T L + PR + +
Sbjct: 146 SLPGSCEAGPPLTFSWTGNAL------------SPLDPETTRSSELTLT-PRPEDHGTNL 192
Query: 546 HCKASNKFGSIISE-SVQL 563
C+ + + +E +VQL
Sbjct: 193 TCQMKRQGAQVTTERTVQL 211
Score = 31.7 bits (71), Expect = 0.62
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 11/95 (11%)
Query: 353 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 412
L D G+Y V R N + F E +
Sbjct: 84 LSIGDARMEDTGSYFFRV-------ERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLE 136
Query: 413 AGDKVRLECV----AFGYPVPSYNWTRRGSPLPRN 443
+G RL C P +++WT
Sbjct: 137 SGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP 171
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 48.7 bits (116), Expect = 3e-07
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 14/90 (15%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRI-----------LTIPNVK 732
G L C S W+ + NRI +++ +V
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVS 79
Query: 733 VEDQGEYICRASNDRSALESSVTISIQAEP 762
+ D+G+Y C S +++ P
Sbjct: 80 LSDEGQYTCSLFTM-PVKTSKAYLTVLGVP 108
Score = 43.7 bits (103), Expect = 1e-05
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 18/112 (16%)
Query: 459 KMRGPYFIKQPTDVVFDLSKRSIL--NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLI 516
K++G T V +++ L+C N S +W Q L +
Sbjct: 2 KVKGSQGQFPLTQNV------TVVEGGTAILTCRVDQNDNTSLQWSNPA--QQTLYFDDK 53
Query: 517 DPLSDKRFTLSGG-----NLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
L D R L ++ ++D + D G Y C + + L
Sbjct: 54 KALRDNRIELVRASWHELSISVSDV-SLSDEGQYTCSLFTM--PVKTSKAYL 102
Score = 43.3 bits (102), Expect = 2e-05
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-----NLIINDPR 264
L+C N S +W Q L + L D R L ++ ++D
Sbjct: 22 GTAILTCRVDQNDNTSLQWSNPA--QQTLYFDDKKALRDNRIELVRASWHELSISVSDV- 78
Query: 265 QVEDRGSYHCKASNKFGSIISESVQL 290
+ D G Y C + + L
Sbjct: 79 SLSDEGQYTCSLFTM--PVKTSKAYL 102
Score = 31.4 bits (71), Expect = 0.27
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 15/67 (22%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLP--RNAYFENFNRI-----------LTIPNVK 459
G L C S W+ + NRI +++ +V
Sbjct: 20 EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVS 79
Query: 460 MR--GPY 464
+ G Y
Sbjct: 80 LSDEGQY 86
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 50.3 bits (119), Expect = 3e-07
Identities = 23/167 (13%), Positives = 46/167 (27%), Gaps = 27/167 (16%)
Query: 596 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC-----------NVQ 644
N W ++ + + + FS +E D+G Y C ++
Sbjct: 24 DSDENLKWEKN--GQELPQKHDKHLVLQD---FSEVE--DSGYYVCYTPASNKNTYLYLK 76
Query: 645 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA---GDKVRLECVAFGYPV 701
++V K + + V L C G
Sbjct: 77 ARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTD 133
Query: 702 PSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS 748
+ W + GS + + + N + +G Y C+ + + S
Sbjct: 134 KTIKWLKDGSII---SPLNATKNTWNLGNNAKDPRGTYQCQGAKETS 177
Score = 40.2 bits (93), Expect = 9e-04
Identities = 26/189 (13%), Positives = 49/189 (25%), Gaps = 45/189 (23%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ L+C + + +W K + DK L++ D +VED
Sbjct: 15 TSVELTCPL--DSDENLKWEKNG--------QELPQKHDKH-------LVLQDFSEVEDS 57
Query: 270 GSYHCKASNKFGSII---------SESVQLAFGFIGEFNLKRAPEIGNQ-NWGKAMFCDP 319
G Y C + ++ + + A + G+Q N K +
Sbjct: 58 GYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVD 117
Query: 320 ----------PTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
W +D + + K + G Y C
Sbjct: 118 GSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNT-------WNLGNNAKDPRGTYQC 170
Query: 369 NVQSKVSDT 377
+ S+
Sbjct: 171 QGAKETSNP 179
Score = 40.2 bits (93), Expect = 9e-04
Identities = 26/189 (13%), Positives = 49/189 (25%), Gaps = 45/189 (23%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
+ L+C + + +W K + DK L++ D +VED
Sbjct: 15 TSVELTCPL--DSDENLKWEKNG--------QELPQKHDKH-------LVLQDFSEVEDS 57
Query: 543 GSYHCKASNKFGSII---------SESVQLAFGFIGEFNLKRAPEIGNQ-NWGKAMFCDP 592
G Y C + ++ + + A + G+Q N K +
Sbjct: 58 GYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVD 117
Query: 593 ----------PTNYPGVNYYWARDYFP-NFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 641
W +D + + K + G Y C
Sbjct: 118 GSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNT-------WNLGNNAKDPRGTYQC 170
Query: 642 NVQSKVSDT 650
+ S+
Sbjct: 171 QGAKETSNP 179
Score = 36.4 bits (83), Expect = 0.017
Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 170 DDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWF 229
DD + + + + + L+C G + + +W
Sbjct: 83 DDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTDKTIKWL 139
Query: 230 KEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSII 284
K+ ++I PL+ + T + G + RG+Y C+ + + + +
Sbjct: 140 KDG--------SIISPLNATKNTWNLG------NNAKDPRGTYQCQGAKETSNPL 180
Score = 35.6 bits (81), Expect = 0.033
Identities = 25/192 (13%), Positives = 53/192 (27%), Gaps = 71/192 (36%)
Query: 413 AGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR---GPY----- 464
+G V L C + W + G LP + ++ L + + G Y
Sbjct: 13 SGTSVELTCPL--DSDENLKWEKNGQELP-----QKHDKHLVLQDFSEVEDSGYYVCYTP 65
Query: 465 ---------------------------------------FIKQPTDVVFDLSKRSILNDI 485
+ + +
Sbjct: 66 ASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSV 125
Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSY 545
L+C G + + +W K+ ++I PL+ + T + G + RG+Y
Sbjct: 126 LLTC---GLTDKTIKWLKDG--------SIISPLNATKNTWNLG------NNAKDPRGTY 168
Query: 546 HCKASNKFGSII 557
C+ + + + +
Sbjct: 169 QCQGAKETSNPL 180
Score = 31.4 bits (70), Expect = 0.81
Identities = 22/158 (13%), Positives = 40/158 (25%), Gaps = 29/158 (18%)
Query: 323 YPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC-----------NVQ 371
N W ++ + + + FS +E D+G Y C ++
Sbjct: 24 DSDENLKWEKN--GQELPQKHDKHLVLQD---FSEVE--DSGYYVCYTPASNKNTYLYLK 76
Query: 372 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA---GDKVRLECVAFGYPV 428
++V K + + V L C G
Sbjct: 77 ARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTD 133
Query: 429 PSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPY 464
+ W + GS + + + N RG Y
Sbjct: 134 KTIKWLKDGSII---SPLNATKNTWNLGNNAKDPRGTY 168
>1byf_A TC14, protein (polyandrocarpa lectin); C-type lectin,
galactose-specific, sugar binding protein; 2.00A
{Polyandrocarpa misakiensis} SCOP: d.169.1.1 PDB:
1tlg_A*
Length = 125
Score = 48.5 bits (116), Expect = 5e-07
Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 4/78 (5%)
Query: 38 DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT- 96
D F DA C+S L + D F + W G
Sbjct: 2 DYEILFSDET-MNYADAGTYCQSRGMALVSSAMRDSTMVKAILAFTEVKGHDYW-VGADN 59
Query: 97 -QQSPNLWVNEDGTNLNE 113
Q ++ DG +L
Sbjct: 60 LQDGAYNFLWNDGVSLPT 77
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 50.4 bits (120), Expect = 8e-07
Identities = 36/193 (18%), Positives = 56/193 (29%), Gaps = 18/193 (9%)
Query: 626 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 685
+ Q AG Y C S + P PL + +++ P+ + P
Sbjct: 64 FSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEK---PSLSAQPGPTVL- 119
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLPR---NAYFENFNRILTIPNVKVEDQGEYICR 742
AG+ V L C + Y+ +R G R N P G Y C
Sbjct: 120 AGESVTLSCSSRSSYD-MYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCF 178
Query: 743 ASNDRSALESS-----VTISIQAEPNFTIPLTDKHMDNQAD-LTWTCEA----FGVPDVT 792
S S E S + +S+ P+ + P + + A D+
Sbjct: 179 GSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEEDLN 238
Query: 793 YSWFRNGELGHQM 805
G H
Sbjct: 239 LDLVPRGSSSHHH 251
Score = 35.0 bits (80), Expect = 0.084
Identities = 20/126 (15%), Positives = 34/126 (26%), Gaps = 14/126 (11%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRI-----LTIPNVKVEDQGEYIC 741
+ V L+C + + R G + +I + + G Y C
Sbjct: 21 EETVILQCWS-DVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRC 79
Query: 742 RASNDRSALESS-----VTISIQAEPNFTIPLTD--KHMDNQADLTWTCEAFGVPDVTYS 794
S S + S + I I + +T +C + Y
Sbjct: 80 YGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSS-RSSYDMYH 138
Query: 795 WFRNGE 800
R GE
Sbjct: 139 LSREGE 144
Score = 32.3 bits (73), Expect = 0.59
Identities = 40/259 (15%), Positives = 67/259 (25%), Gaps = 62/259 (23%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQD--RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ L C+ + +E +D L+ D +S F++ P +
Sbjct: 24 VILQCW-SDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIG--------PMMQDLA 74
Query: 270 GSYHCKASNKFG----SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT---- 321
G+Y C S S S+ + + L P + Q + + T
Sbjct: 75 GTYRCYGSVTHSPYQLSAPSDPLDIVI-----TGLYEKPSLSAQPGPTVLAGESVTLSCS 129
Query: 322 -NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC--------NVQS 372
Y+ +R+ + V+ F G Y C S
Sbjct: 130 SRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWS 189
Query: 373 KVSD------TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA--- 423
SD TG +P P S + G+ L A
Sbjct: 190 NSSDPLLVSVTGNPSNSWPSPTEPSS-------------------ETGNPRHLHAAAEQK 230
Query: 424 -FGYPVPSYNWTRRGSPLP 441
+ + RGS
Sbjct: 231 LISEEDLNLDLVPRGSSSH 249
Score = 32.3 bits (73), Expect = 0.59
Identities = 40/259 (15%), Positives = 67/259 (25%), Gaps = 62/259 (23%)
Query: 485 ITLSCYAGGYPNPSYEWFKEDYVQD--RLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
+ L C+ + +E +D L+ D +S F++ P +
Sbjct: 24 VILQCW-SDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIG--------PMMQDLA 74
Query: 543 GSYHCKASNKFG----SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT---- 594
G+Y C S S S+ + + L P + Q + + T
Sbjct: 75 GTYRCYGSVTHSPYQLSAPSDPLDIVI-----TGLYEKPSLSAQPGPTVLAGESVTLSCS 129
Query: 595 -NYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC--------NVQS 645
Y+ +R+ + V+ F G Y C S
Sbjct: 130 SRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWS 189
Query: 646 KVSD------TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA--- 696
SD TG +P P S + G+ L A
Sbjct: 190 NSSDPLLVSVTGNPSNSWPSPTEPSS-------------------ETGNPRHLHAAAEQK 230
Query: 697 -FGYPVPSYNWTRRGSPLP 714
+ + RGS
Sbjct: 231 LISEEDLNLDLVPRGSSSH 249
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 50.7 bits (121), Expect = 1e-06
Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 33/194 (17%)
Query: 635 DAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKA----GDKV 690
DAG Y C K S P F +L P A V
Sbjct: 85 DAGTYYCVKFRKGS---------PDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 135
Query: 691 RLECVAFGY-PVP-SYNWTRRGSPLP-----------RNAYFENFNRILTIPNVKVEDQG 737
C + G+ P + W + G+ L +Y + + + +
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHS--TAKVVLTREDVHS 193
Query: 738 EYICRASND---RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVT 792
+ IC ++ L + +S T+ +T + + + + TC+ +
Sbjct: 194 QVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQ 253
Query: 793 YSWFRNGELGHQMT 806
+W NG + T
Sbjct: 254 LTWLENGNVSRTET 267
Score = 46.9 bits (111), Expect = 2e-05
Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 29/144 (20%)
Query: 685 KAGDKVRLECVAFGY-PVPSYNWTRRGSPLPR---NAYFENFNRI--------------- 725
AG+ L C PV W R P N +F R+
Sbjct: 16 AAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFS 75
Query: 726 LTIPNVKVEDQGEYICRASNDRSA-------LESSVTISIQAEPNFTIPLTDKHMDNQAD 778
++I N+ D G Y C S + +++ + +
Sbjct: 76 ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT- 134
Query: 779 LTWTCEAFGV--PDVTYSWFRNGE 800
+++TCE+ G D+T WF+NG
Sbjct: 135 VSFTCESHGFSPRDITLKWFKNGN 158
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 49.0 bits (116), Expect = 1e-06
Identities = 18/132 (13%), Positives = 33/132 (25%), Gaps = 10/132 (7%)
Query: 681 PEAP--KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGE 738
P+ + + + C P + L + E + +
Sbjct: 9 PKKLAVEPKGSLEVNCST-TCNQPEVGGLE--TSLNKILLDEQ-AQWKHYLVSNISHDTV 64
Query: 739 YICRASNDRSALESSVTISIQAEP-NFTIPLTDKHMDNQADLTWTCEAFGV---PDVTYS 794
C + + +S+ P + L + T C V +T
Sbjct: 65 LQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124
Query: 795 WFRNGELGHQMT 806
FR E H T
Sbjct: 125 LFRGNETLHYET 136
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 47.9 bits (113), Expect = 1e-06
Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 15/137 (10%)
Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF-PKTFPEAPKAGDKVRLECVAFG 698
+K + P + ++ P T E AG V L+C
Sbjct: 5 KETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKD 64
Query: 699 YPVPSYNWTRRGSPL--PRNAYFENFNRI-----------LTIPNVKVEDQGEYICRASN 745
+ S W+ NRI ++I NV + D+GEY C
Sbjct: 65 HEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFT 124
Query: 746 DRSALESSVTISIQAEP 762
+ +++ P
Sbjct: 125 M-PVRTAKSLVTVLGIP 140
Score = 44.0 bits (103), Expect = 3e-05
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-----NLIINDPR 264
+ L C + + S +W Q L L D R L ++ I++
Sbjct: 54 GTVVLKCQVKDHEDSSLQWSNPA--QQTLYFGEKRALRDNRIQLVTSTPHELSISISNV- 110
Query: 265 QVEDRGSYHCKASNKFGSIISESVQL 290
+ D G Y C + + +
Sbjct: 111 ALADEGEYTCSIFTM--PVRTAKSLV 134
Score = 44.0 bits (103), Expect = 3e-05
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG-----NLIINDPR 537
+ L C + + S +W Q L L D R L ++ I++
Sbjct: 54 GTVVLKCQVKDHEDSSLQWSNPA--QQTLYFGEKRALRDNRIQLVTSTPHELSISISNV- 110
Query: 538 QVEDRGSYHCKASNKFGSIISESVQL 563
+ D G Y C + + +
Sbjct: 111 ALADEGEYTCSIFTM--PVRTAKSLV 134
Score = 31.7 bits (71), Expect = 0.38
Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 16/114 (14%)
Query: 367 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNF-PKTFPEAPKAGDKVRLECVAFG 425
+K + P + ++ P T E AG V L+C
Sbjct: 5 KETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKD 64
Query: 426 YPVPSYNWTRRGSPL--PRNAYFENFNRI-----------LTIPNVKMR--GPY 464
+ S W+ NRI ++I NV + G Y
Sbjct: 65 HEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEY 118
>2msb_A Mannose-binding protein-A; lectin; HET: BMA MAN; 1.70A {Rattus
rattus} SCOP: d.169.1.1 PDB: 1msb_A 1ytt_A*
Length = 115
Score = 46.9 bits (112), Expect = 1e-06
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 38 DSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT- 96
+ + K C L +A +A+E+ I Q+ + + G T
Sbjct: 3 KKFFVTNHER-MPFSKVKALCSELRGTVAIPRNAEENKAI------QEVAKTSAFLGITD 55
Query: 97 QQSPNLWVNEDGTNLN 112
+ + ++ G L
Sbjct: 56 EVTEGQFMYVTGGRLT 71
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 50.4 bits (119), Expect = 2e-06
Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 5/84 (5%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI--PLTDKHMDNQADLTWTC 783
+P V+ +G Y+ + ++ +++ P ++ + +A C
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLC 315
Query: 784 EAFG---VPDVTYSWFRNGELGHQ 804
+ W G G +
Sbjct: 316 LVSHFYPSGGLEVEWELRGGPGGR 339
Score = 31.9 bits (71), Expect = 0.83
Identities = 30/180 (16%), Positives = 48/180 (26%), Gaps = 35/180 (19%)
Query: 598 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF 657
F + +++ + +G + ++ G Y +
Sbjct: 228 MPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVT---L 284
Query: 658 PLKVF--PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVPSYN--WTRRGSP 712
L V+ P + P T A L C+ YP W RG P
Sbjct: 285 ELAVYKPPK--------VSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP 336
Query: 713 LPRNAYFENFNRI----------------LTIPNVKVEDQGE-YICRASNDRSALESSVT 755
R+ E + L P V E G Y CR + +L +S
Sbjct: 337 GGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHH--PSLPASGR 394
Score = 31.5 bits (70), Expect = 1.2
Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 16/123 (13%)
Query: 325 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFF 384
F + +++ + +G + ++ G Y +
Sbjct: 228 MPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVT---L 284
Query: 385 PLKVF--PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG-YPVPSYN--WTRRGSP 439
L V+ P + P T A L C+ YP W RG P
Sbjct: 285 ELAVYKPPK--------VSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGP 336
Query: 440 LPR 442
R
Sbjct: 337 GGR 339
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 50.1 bits (120), Expect = 2e-06
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTR-RGSPLPRNAYFENF----NRILTIPNVKVEDQGEYIC 741
G L+C A + S +W G+ + AY + L NV V+D G Y C
Sbjct: 356 GMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTC 414
Query: 742 RASNDRSALESSVTISIQAEPN 763
SN +S T+++ +
Sbjct: 415 MVSNSVGNTTASATLNVTGTHH 436
Score = 40.9 bits (96), Expect = 0.001
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 190 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 249
P ++ P D+ L C A S W + ++ + +
Sbjct: 342 PVIVEPPADLNVTEG-----MAAELKCRAST-SLTSVSWITPN---GTVMTH--GAYKVR 390
Query: 250 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 282
LS G L + V+D G Y C SN G+
Sbjct: 391 IAVLSDGTLNFTNV-TVQDTGMYTCMVSNSVGN 422
Score = 40.9 bits (96), Expect = 0.001
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 463 PYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDK 522
P ++ P D+ L C A S W + ++ + +
Sbjct: 342 PVIVEPPADLNVTEG-----MAAELKCRAST-SLTSVSWITPN---GTVMTH--GAYKVR 390
Query: 523 RFTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 555
LS G L + V+D G Y C SN G+
Sbjct: 391 IAVLSDGTLNFTNV-TVQDTGMYTCMVSNSVGN 422
Score = 30.1 bits (68), Expect = 3.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 340 EEDKRVFVSYDGALYFSALEQIDAGNYSC 368
R+ V DG L F+ + D G Y+C
Sbjct: 386 AYKVRIAVLSDGTLNFTNVTVQDTGMYTC 414
Score = 30.1 bits (68), Expect = 3.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 613 EEDKRVFVSYDGALYFSALEQIDAGNYSC 641
R+ V DG L F+ + D G Y+C
Sbjct: 386 AYKVRIAVLSDGTLNFTNVTVQDTGMYTC 414
>1rdl_1 SUB-MBP-C, mannose-binding protein-C; C-type lectin,
calcium-binding protein; HET: MMA; 1.70A {Rattus rattus}
SCOP: d.169.1.1 PDB: 1rdj_1* 1rdk_1* 1rdi_1* 1rdm_1*
1rdn_1* 1rdo_1 1bv4_A 1kza_1* 1kzb_1* 1kzc_1* 1kzd_1*
1kze_1*
Length = 113
Score = 45.3 bits (108), Expect = 5e-06
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQ 98
+ N AK C L +A +A+E+ I Q+ + + G T Q+
Sbjct: 3 YFMSSVRR-MPLNRAKALCSELQGTVATPRNAEENRAI------QNVAKDVAFLGITDQR 55
Query: 99 SPNLWVNEDGTNLN 112
+ N++ + G +
Sbjct: 56 TENVFEDLTGNRVR 69
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 45.6 bits (108), Expect = 1e-05
Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 12/122 (9%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASND 746
V L C V Y + S ++ +L IP +K G Y C N
Sbjct: 22 EKPVTLRCQG-PPGVDLYRLEKLSSSRYQDQ------AVLFIPAMKRSLAGRYRCSYQNG 74
Query: 747 RSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNGELG 802
S + + A F P + + D+T C+ ++ ++ G+
Sbjct: 75 SLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQT-RYGFDQFALYKEGDPA 133
Query: 803 HQ 804
Sbjct: 134 PY 135
Score = 43.6 bits (103), Expect = 6e-05
Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 18/133 (13%)
Query: 626 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP- 684
L+ A+++ AG Y C+ Q+ S+ +L F K A
Sbjct: 54 LFIPAMKRSLAGRYRCSYQN------------GSLWSLPSDQLELVATGVFAKPSLSAQP 101
Query: 685 ----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYI 740
+G V L+C + + G P P + I V G Y
Sbjct: 102 GPAVSSGGDVTLQCQTRYGFD-QFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYR 160
Query: 741 CRASNDRSALESS 753
C + + R S
Sbjct: 161 CYSFSSRDPYLWS 173
Score = 33.2 bits (76), Expect = 0.18
Identities = 31/179 (17%), Positives = 50/179 (27%), Gaps = 48/179 (26%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMR--GPYFIK---- 467
V L C V Y + S ++ +L IP +K G Y
Sbjct: 22 EKPVTLRCQG-PPGVDLYRLEKLSSSRYQDQ------AVLFIPAMKRSLAGRYRCSYQNG 74
Query: 468 ----QPTD----VVFDLSKRSIL-----------NDITLSCYAGGYPNPSYEWFKEDYVQ 508
P+D V + + L D+TL C Y + +KE
Sbjct: 75 SLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQ-TRYGFDQFALYKEG--- 130
Query: 509 DRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG----SIISESVQL 563
D + F + G+Y C + + S S+ ++L
Sbjct: 131 DPAPYKNPERWYRASFPI--------ITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLEL 181
Score = 28.6 bits (64), Expect = 5.9
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 16/83 (19%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+TL C Y + +KE D + F + G+
Sbjct: 111 VTLQCQ-TRYGFDQFALYKEG---DPAPYKNPERWYRASFPI--------ITVTAAHSGT 158
Query: 272 YHCKASNKFG----SIISESVQL 290
Y C + + S S+ ++L
Sbjct: 159 YRCYSFSSRDPYLWSAPSDPLEL 181
Score = 28.6 bits (64), Expect = 6.4
Identities = 27/156 (17%), Positives = 40/156 (25%), Gaps = 44/156 (28%)
Query: 353 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP- 411
L+ A+++ AG Y C+ Q+ S+ +L F K A
Sbjct: 54 LFIPAMKRSLAGRYRCSYQN------------GSLWSLPSDQLELVATGVFAKPSLSAQP 101
Query: 412 ----KAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPYF 465
+G V L+C + + G P P + I V G Y
Sbjct: 102 GPAVSSGGDVTLQCQTRYGFD-QFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTY- 159
Query: 466 IKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW 501
CY Y W
Sbjct: 160 ----------------------RCY-SFSSRDPYLW 172
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 47.0 bits (112), Expect = 2e-05
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-----YFENFNRILTIPNVKVEDQGEYIC 741
G L+C P+ S W + +A + L +V + D G Y C
Sbjct: 367 GRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTC 424
Query: 742 RASNDRSALESSVTISIQAEP 762
+N +S +++
Sbjct: 425 MVTNVAGNSNASAYLNVSTAG 445
Score = 37.8 bits (88), Expect = 0.012
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
L C P S +W + ++++ + L+ G L + + D
Sbjct: 368 RMAELKCRTP--PMSSVKWLLPN---GTVLSH--ASRHPRISVLNDGTLNFSHV-LLSDT 419
Query: 270 GSYHCKASNKFGS 282
G Y C +N G+
Sbjct: 420 GVYTCMVTNVAGN 432
Score = 37.8 bits (88), Expect = 0.012
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
L C P S +W + ++++ + L+ G L + + D
Sbjct: 368 RMAELKCRTP--PMSSVKWLLPN---GTVLSH--ASRHPRISVLNDGTLNFSHV-LLSDT 419
Query: 543 GSYHCKASNKFGS 555
G Y C +N G+
Sbjct: 420 GVYTCMVTNVAGN 432
Score = 29.7 bits (67), Expect = 4.1
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 318 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
P V + + R+ V DG L FS + D G Y+C
Sbjct: 377 PPM---SSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTC 424
Score = 29.7 bits (67), Expect = 4.1
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 591 DPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 641
P V + + R+ V DG L FS + D G Y+C
Sbjct: 377 PPM---SSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTC 424
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 44.8 bits (106), Expect = 3e-05
Identities = 25/185 (13%), Positives = 51/185 (27%), Gaps = 30/185 (16%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ----- 644
C Y ++ P + + ++ + AG Y C +
Sbjct: 26 CQGTL--EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGW 83
Query: 645 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY 704
S+ SD PL++ + + G V L C + P+ ++
Sbjct: 84 SQPSD--------PLELVMTGAYSKPTLSALPSPLVTS----GKSVTLLCQS-RSPMDTF 130
Query: 705 NWTRRGSPLPRNAYF-----ENFNRILTIPNVKVEDQGEYICRASNDRSALESS-----V 754
+ + P + + V G Y C +S+ S S +
Sbjct: 131 LLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPL 190
Query: 755 TISIQ 759
+ +
Sbjct: 191 ELIVS 195
Score = 41.0 bits (96), Expect = 5e-04
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 9/121 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 743
G+ V + C Y + SP P +N +IP++ + G Y C
Sbjct: 19 GNSVTIWCQG-TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYY 77
Query: 744 SNDRSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
+ + S + + ++ P L + + +T C++ P T+ +
Sbjct: 78 RSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS-RSPMDTFLLCKER 136
Query: 800 E 800
Sbjct: 137 A 137
Score = 34.4 bits (79), Expect = 0.074
Identities = 25/164 (15%), Positives = 43/164 (26%), Gaps = 22/164 (13%)
Query: 213 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSY 272
T+ C G Y KE+ N ++P + RF++ + G Y
Sbjct: 23 TIWC-QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIP--------SMTEDYAGRY 73
Query: 273 HCKASNKFG-SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAM-------FCDPPTNYP 324
C + G S S+ ++L P + C +
Sbjct: 74 RCYYRSPVGWSQPSDPLELVM-----TGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPMD 128
Query: 325 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
R P + + S + + G Y C
Sbjct: 129 TFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172
Score = 34.4 bits (79), Expect = 0.074
Identities = 25/164 (15%), Positives = 43/164 (26%), Gaps = 22/164 (13%)
Query: 486 TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSY 545
T+ C G Y KE+ N ++P + RF++ + G Y
Sbjct: 23 TIWC-QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIP--------SMTEDYAGRY 73
Query: 546 HCKASNKFG-SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAM-------FCDPPTNYP 597
C + G S S+ ++L P + C +
Sbjct: 74 RCYYRSPVGWSQPSDPLELVM-----TGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPMD 128
Query: 598 GVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 641
R P + + S + + G Y C
Sbjct: 129 TFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172
Score = 33.3 bits (76), Expect = 0.17
Identities = 31/182 (17%), Positives = 51/182 (28%), Gaps = 40/182 (21%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKM---------- 460
G+ V + C Y + SP P +N +IP++
Sbjct: 19 GNSVTIWCQG-TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYY 77
Query: 461 RGPYFIKQPTD----VVFDLSKRSIL-----------NDITLSCYAGGYPNPSYEWFKED 505
R P QP+D V+ + L +TL C P ++ KE
Sbjct: 78 RSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQ-SRSPMDTFLLCKER 136
Query: 506 YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHC----KASNKFGSIISESV 561
L + + G+Y C S+ S S+ +
Sbjct: 137 AAHPLLCLRSEHGAQQHQAEFPMSPV------TSVHGGTYRCFSSHGFSHYLLSHPSDPL 190
Query: 562 QL 563
+L
Sbjct: 191 EL 192
Score = 31.7 bits (72), Expect = 0.68
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+TL C P ++ KE L + + G+
Sbjct: 117 VTLLCQ-SRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPV------TSVHGGT 169
Query: 272 YHC----KASNKFGSIISESVQL 290
Y C S+ S S+ ++L
Sbjct: 170 YRCFSSHGFSHYLLSHPSDPLEL 192
Score = 31.3 bits (71), Expect = 0.78
Identities = 23/197 (11%), Positives = 46/197 (23%), Gaps = 51/197 (25%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQ----- 371
C Y ++ P + + ++ + AG Y C +
Sbjct: 26 CQGTL--EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGW 83
Query: 372 SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSY 431
S+ SD PL++ + + G V L C + P+ ++
Sbjct: 84 SQPSD--------PLELVMTGAYSKPTLSALPSPLVTS----GKSVTLLCQS-RSPMDTF 130
Query: 432 NWTRRGSPLPRNAYF-----ENFNRILTIPNVKM--RGPYFIKQPTDVVFDLSKRSILND 484
+ + P + + V G Y
Sbjct: 131 LLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTY-------------------- 170
Query: 485 ITLSCYAGGYPNPSYEW 501
C+ + Y
Sbjct: 171 ---RCF-SSHGFSHYLL 183
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 46.4 bits (110), Expect = 3e-05
Identities = 62/377 (16%), Positives = 102/377 (27%), Gaps = 75/377 (19%)
Query: 485 ITLSCYAGGYPNPSY--EWFKEDYVQDRLVANLIDPLSDK---------RFTLSGGN--- 530
+ +SC A GY +Y W K+ Q I+P S + TL+
Sbjct: 17 VKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSN 76
Query: 531 ---LIINDPRQVEDRGSYHCKASNKF---GSIISESVQLAFGFIGEFNLKRAPEIGNQNW 584
+ ++ +D Y+C + G + +V A P +
Sbjct: 77 TANIHLSSLT-SDDSAVYYCVREGEVPYWGQGTTVTVSSAK--------TTPPSVYPLAP 127
Query: 585 GKAMFCDPPTNYPGVNYYWARDYFPNFVE---------EDKRVF-VSYDGALYF--SAL- 631
G TN + YFP V F LY S++
Sbjct: 128 G----SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVT 183
Query: 632 ---EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQL---KFPNNFPKTFPEAPK 685
+ +CNV S T + P + FP +
Sbjct: 184 VPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLL 243
Query: 686 AGDKVRLECVAFGYPVPSY----NWTRRGSPL---PRNAYFENFNR------ILTIPNVK 732
++ CV +W + E FN L I +
Sbjct: 244 ITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQD 303
Query: 733 VEDQGEYICRASNDRSA----LESSVTISIQAEPNFTI--PLTDKHMDNQADLTWTCEAF 786
+ E+ CR ++ S T P P ++ ++ L TC
Sbjct: 304 WLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSL--TCMIT 361
Query: 787 GV--PDVTYSWFRNGEL 801
D+T W +G+
Sbjct: 362 DFFPEDITVEWQSDGQA 378
Score = 28.7 bits (64), Expect = 9.1
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSY--NWTRR 436
E + G V++ C A GY +Y +W ++
Sbjct: 8 AELARPGASVKMSCKASGYTFTTYTIHWIKQ 38
Score = 28.7 bits (64), Expect = 9.1
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 681 PEAPKAGDKVRLECVAFGYPVPSY--NWTRR 709
E + G V++ C A GY +Y +W ++
Sbjct: 8 AELARPGASVKMSCKASGYTFTTYTIHWIKQ 38
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 44.9 bits (106), Expect = 5e-05
Identities = 26/181 (14%), Positives = 42/181 (23%), Gaps = 23/181 (12%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
C V Y + V+ K Y + AG YSC +
Sbjct: 28 CQGNY--GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV---- 81
Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-----PEAPKAGDKVRLECVAFGYPVPSY 704
SN L + +G+KV C +
Sbjct: 82 --------GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTATSMF 132
Query: 705 NWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDR---SALESSVTISIQAE 761
+ G + + V +G Y C S + S V + + +
Sbjct: 133 LLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192
Query: 762 P 762
Sbjct: 193 I 193
Score = 43.7 bits (103), Expect = 1e-04
Identities = 18/125 (14%), Positives = 32/125 (25%), Gaps = 9/125 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 743
+V + C Y Y GS IP++ G+Y C
Sbjct: 21 EKQVTICCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 79
Query: 744 SNDRSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
E S + + + P + + +T+ C + + G
Sbjct: 80 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTATSMFLLLKEG 138
Query: 800 ELGHQ 804
H
Sbjct: 139 RSSHV 143
Score = 34.1 bits (78), Expect = 0.12
Identities = 25/175 (14%), Positives = 44/175 (25%), Gaps = 23/175 (13%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+T+ C G Y Y+ E + + ++ +F + G
Sbjct: 24 VTICCQ-GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIP--------DMNSRMAGQ 74
Query: 272 YHCKASNKFG-SIISESVQL-AFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPTNYPGVNY 328
Y C S S + L L P + K F C T +
Sbjct: 75 YSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSM--F 132
Query: 329 YWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC------NVQSKVSDT 377
++ + V+ + G Y C + S S+
Sbjct: 133 LLLKEGRSSHVQRGYG---KVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEP 184
Score = 30.6 bits (69), Expect = 1.6
Identities = 23/156 (14%), Positives = 34/156 (21%), Gaps = 22/156 (14%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C V Y + V+ K Y + AG YSC +
Sbjct: 28 CQGNY--GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV---- 81
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-----PEAPKAGDKVRLECVAFGYPVPSY 431
SN L + +G+KV C +
Sbjct: 82 --------GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTATSMF 132
Query: 432 NWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPYF 465
+ G + + V RG Y
Sbjct: 133 LLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYR 168
Score = 29.9 bits (67), Expect = 2.6
Identities = 30/180 (16%), Positives = 43/180 (23%), Gaps = 43/180 (23%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKM---------- 460
+V + C Y Y GS IP++
Sbjct: 21 EKQVTICCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 79
Query: 461 RGPYFIKQPTD----VVFDLSKRSIL-----------NDITLSCYAGGYPNPSYEWFKED 505
R +P++ VV ++ L +T C + KE
Sbjct: 80 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC-RLDTATSMFLLLKEG 138
Query: 506 YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK--FGSIISESVQL 563
F L P RG+Y C S S SE V+L
Sbjct: 139 ---RSSHVQRGYGKVQAEFPLG--------PVTTAHRGTYRCFGSYNNHAWSFPSEPVKL 187
Score = 28.3 bits (63), Expect = 8.2
Identities = 17/81 (20%), Positives = 21/81 (25%), Gaps = 14/81 (17%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+T C + KE F L P RG+
Sbjct: 119 VTFYC-RLDTATSMFLLLKEG---RSSHVQRGYGKVQAEFPLG--------PVTTAHRGT 166
Query: 272 YHCKASNK--FGSIISESVQL 290
Y C S S SE V+L
Sbjct: 167 YRCFGSYNNHAWSFPSEPVKL 187
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 44.1 bits (104), Expect = 5e-05
Identities = 24/178 (13%), Positives = 42/178 (23%), Gaps = 32/178 (17%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
C Y ++ P + + ++ + AG Y C S
Sbjct: 26 CQGTL--EAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYS---- 79
Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-----PEAPKAGDKVRLECVAFGYPV--- 701
P S+ +L + K +G+ V L+C +
Sbjct: 80 --------PAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFI 131
Query: 702 ------PSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
+WT P + F + V + C S S
Sbjct: 132 LTEEGDHKLSWTLDSQLTPSGQFQALF----PVGPVTPSHRWMLRCYGSRRHILQVWS 185
Score = 40.6 bits (95), Expect = 8e-04
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 9/127 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 743
G+ V + C Y + GSP P +N +IP++ G Y C
Sbjct: 19 GNSVTIRCQG-TLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYY 77
Query: 744 SNDRSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
+ E S + + + P L + + ++T C + + + G
Sbjct: 78 YSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS-RLRFDRFILTEEG 136
Query: 800 ELGHQMT 806
+ T
Sbjct: 137 DHKLSWT 143
Score = 31.4 bits (71), Expect = 0.70
Identities = 23/169 (13%), Positives = 40/169 (23%), Gaps = 29/169 (17%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+T+ C G Y KE + N ++P + RF++ G
Sbjct: 22 VTIRC-QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIP--------SMTEHHAGR 72
Query: 272 YHCKASNKFG-SIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT-----NYPG 325
Y C + G S S+ ++L P + + T
Sbjct: 73 YRCYYYSPAGWSEPSDPLELVV-----TGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF 127
Query: 326 VNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQI------DAGNYSC 368
+ + F AL + C
Sbjct: 128 DRFILTEEGDHKLSWTLDSQLTPSGQ---FQALFPVGPVTPSHRWMLRC 173
Score = 31.0 bits (70), Expect = 1.2
Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 45/185 (24%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKM---------- 460
G+ V + C Y + GSP P +N +IP++
Sbjct: 19 GNSVTIRCQG-TLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYY 77
Query: 461 RGPYFIKQPTD----VVFDLSKRSIL-----------NDITLSCYAGGYPNPSYEWFKE- 504
P +P+D VV + L ++TL C + +E
Sbjct: 78 YSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCG-SRLRFDRFILTEEG 136
Query: 505 --DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFG----SIIS 558
F + P R C S + S S
Sbjct: 137 DHKLSWTLDSQLTPSGQFQALFPVG--------PVTPSHRWMLRCYGSRRHILQVWSEPS 188
Query: 559 ESVQL 563
+ +++
Sbjct: 189 DLLEI 193
Score = 29.5 bits (66), Expect = 3.5
Identities = 26/201 (12%), Positives = 44/201 (21%), Gaps = 58/201 (28%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C Y ++ P + + ++ + AG Y C S
Sbjct: 26 CQGTL--EAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYS---- 79
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTF-----PEAPKAGDKVRLECVAFGYPV--- 428
P S+ +L + K +G+ V L+C +
Sbjct: 80 --------PAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFI 131
Query: 429 ------PSYNWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPYFIKQPTDVVFDLSKRS 480
+WT P + F + V R
Sbjct: 132 LTEEGDHKLSWTLDSQLTPSGQFQALF----PVGPVTPSHRWML---------------- 171
Query: 481 ILNDITLSCYAGGYPNPSYEW 501
CY G + W
Sbjct: 172 -------RCY-GSRRHILQVW 184
Score = 29.1 bits (65), Expect = 4.8
Identities = 11/86 (12%), Positives = 20/86 (23%), Gaps = 16/86 (18%)
Query: 212 ITLSCYAGGYPNPSYEWFKE---DYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
+TL C + +E F + P
Sbjct: 117 VTLQCG-SRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVG--------PVTPSH 167
Query: 269 RGSYHCKASNKFG----SIISESVQL 290
R C S + S S+ +++
Sbjct: 168 RWMLRCYGSRRHILQVWSEPSDLLEI 193
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 42.1 bits (98), Expect = 6e-05
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVED 268
+ L+C YP W D I D + S +L + + ++E
Sbjct: 22 TTVILTCPQ--YPGSEILWQHND--------KNIGGDEDDKNIGSDEDHLSLKEFSELEQ 71
Query: 269 RGSYHCKASNKFGSIISESVQL 290
G Y C + + L
Sbjct: 72 SGYYVCYPRGSKPEDANFYLYL 93
Score = 42.1 bits (98), Expect = 6e-05
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLS-GGNLIINDPRQVED 541
+ L+C YP W D I D + S +L + + ++E
Sbjct: 22 TTVILTCPQ--YPGSEILWQHND--------KNIGGDEDDKNIGSDEDHLSLKEFSELEQ 71
Query: 542 RGSYHCKASNKFGSIISESVQL 563
G Y C + + L
Sbjct: 72 SGYYVCYPRGSKPEDANFYLYL 93
Score = 32.8 bits (74), Expect = 0.086
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNV-KVEDQGEYIC 741
+G V L C YP W + + + L++ ++E G Y+C
Sbjct: 20 SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77
Query: 742 RASN 745
Sbjct: 78 YPRG 81
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 43.3 bits (102), Expect = 7e-05
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQ 98
Y + + P A+ C+ +DL + + E ++ L + W G
Sbjct: 2 TYHYSEKP-MNWQRARRFCRDNYTDLVAIQNKAEIEYLEKTL--PFSRSYYW-IGIRKIG 57
Query: 99 SPNLWVNEDGTNLNE 113
WV + + E
Sbjct: 58 GIWTWVGTNKSLTEE 72
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 42.9 bits (101), Expect = 8e-05
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-QQ 98
Y + + N ++ C++ +DL + + +E ++ L W G
Sbjct: 2 TYHYSTKA-YSWNISRKYCQNRYTDLVAIQNKNEIDYLNKVL--PYYSSYYW-IGIRKNN 57
Query: 99 SPNLWVNEDGTNLNE 113
WV NE
Sbjct: 58 KTWTWVGTKKALTNE 72
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 43.3 bits (102), Expect = 1e-04
Identities = 18/125 (14%), Positives = 32/125 (25%), Gaps = 9/125 (7%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 743
+V + C Y Y GS IP++ G+Y C
Sbjct: 18 EKQVTICCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 76
Query: 744 SNDRSALESSVTISIQAEPNFTIP----LTDKHMDNQADLTWTCEAFGVPDVTYSWFRNG 799
E S + + + P + + +T+ C + + G
Sbjct: 77 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTATSMFLLLKEG 135
Query: 800 ELGHQ 804
H
Sbjct: 136 RSSHV 140
Score = 42.1 bits (99), Expect = 2e-04
Identities = 26/178 (14%), Positives = 41/178 (23%), Gaps = 27/178 (15%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
C V Y + V+ K Y + AG YSC +
Sbjct: 25 CQGNY--GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV---- 78
Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSY 704
SN L + +G+KV C +
Sbjct: 79 --------GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATS-MF 129
Query: 705 NWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRS-------ALESSVT 755
+ G + + V +G Y C S + ++ VT
Sbjct: 130 LLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187
Score = 35.6 bits (82), Expect = 0.035
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 10/80 (12%)
Query: 212 ITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGS 271
+T+ C G Y Y+ E + + ++ +F + G
Sbjct: 21 VTICCQ-GNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIP--------DMNSRMAGQ 71
Query: 272 YHCKASNKFG-SIISESVQL 290
Y C S S + L
Sbjct: 72 YSCIYRVGELWSEPSNLLDL 91
Score = 32.9 bits (75), Expect = 0.24
Identities = 30/180 (16%), Positives = 44/180 (24%), Gaps = 43/180 (23%)
Query: 414 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKM---------- 460
+V + C Y Y GS IP++
Sbjct: 18 EKQVTICCQG-NYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 76
Query: 461 RGPYFIKQPTD----VVFDLSKRSIL-----------NDITLSCYAGGYPNPSYEWFKED 505
R +P++ VV ++ L +T C + + KE
Sbjct: 77 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATS-MFLLLKEG 135
Query: 506 YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNK--FGSIISESVQL 563
F L P RG+Y C S S SE V+L
Sbjct: 136 ---RSSHVQRGYGKVQAEFPLG--------PVTTAHRGTYRCFGSYNNHAWSFPSEPVKL 184
Score = 29.4 bits (66), Expect = 2.9
Identities = 23/156 (14%), Positives = 34/156 (21%), Gaps = 22/156 (14%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 376
C V Y + V+ K Y + AG YSC +
Sbjct: 25 CQGNY--GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV---- 78
Query: 377 TGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP-----KAGDKVRLECVAFGYPVPSY 431
SN L + +G+KV C +
Sbjct: 79 --------GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATS-MF 129
Query: 432 NWTRRGSPLPRNAYFENFNRILTIPNVKM--RGPYF 465
+ G + + V RG Y
Sbjct: 130 LLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYR 165
Score = 28.6 bits (64), Expect = 5.3
Identities = 17/83 (20%), Positives = 22/83 (26%), Gaps = 14/83 (16%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+T C + + KE F L P R
Sbjct: 114 EKVTFYCRLDTATS-MFLLLKEG---RSSHVQRGYGKVQAEFPLG--------PVTTAHR 161
Query: 270 GSYHCKASNK--FGSIISESVQL 290
G+Y C S S SE V+L
Sbjct: 162 GTYRCFGSYNNHAWSFPSEPVKL 184
>1h8u_A MBP, eosinophil granule major basic protein 1; lectin, eosinophil
granule protein, EMBP; 1.8A {Homo sapiens} SCOP:
d.169.1.1 PDB: 2brs_A*
Length = 117
Score = 41.2 bits (97), Expect = 1e-04
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDS-DLANVNDADEHGFIMYQLFWQDPQRRKWYFGGT-- 96
Y V+S +T + A C+ +L ++++ + + I Q + W GG
Sbjct: 3 RYLLVRSL-QTFSQAWFTCRRCYRGNLVSIHNFNINYRI-QCSVSALNQGQVW-IGGRIT 59
Query: 97 -QQSPNLWVNEDGTNLN 112
+ DG+ N
Sbjct: 60 GSGRCRRFQWVDGSRWN 76
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 42.9 bits (101), Expect = 3e-04
Identities = 39/200 (19%), Positives = 52/200 (26%), Gaps = 33/200 (16%)
Query: 632 EQIDAGNYSCNVQSKVSDT--------GRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA 683
+ Y CNV K S+T P FP +
Sbjct: 201 SSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDT 260
Query: 684 PKAGDKVRLECVAFGYPVPSY----NWTRRGSPLPRNAYFENFNRI----------LTIP 729
+ CV NW G + NA + LT+
Sbjct: 261 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV-HNAKTKPREEQYNSTYRVVSVLTVL 319
Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI------PLTDKHMDNQADLTWTC 783
+ + EY C+ SN TIS P D+ NQ L TC
Sbjct: 320 HQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSL--TC 377
Query: 784 EAFGV--PDVTYSWFRNGEL 801
G D+ W NG+
Sbjct: 378 LVKGFYPSDIAVEWESNGQP 397
>3fd4_A Glycoprotein GP42; C type lectin, virus entry, membrane fusion,
HOST-virus interaction, lectin, membrane, transmembrane,
viral protein; 2.40A {Human herpesvirus 4} PDB: 1kg0_C
Length = 191
Score = 41.8 bits (97), Expect = 3e-04
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Query: 29 CPQHWVQYRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQLFWQDPQR 88
++ Y+ C+ F K T N C L + ++ +
Sbjct: 72 TREYTFSYKGCCFYFTKK-KHTWNGCFQACAELYPCTYFYGPTPDILPVVTR---NLNAI 127
Query: 89 RKWYFGGTQQSPNLWVNEDGTNLN 112
+ G + W + DG
Sbjct: 128 ESLWVGVYRVGEGNWTSLDGGTFK 151
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 40.2 bits (93), Expect = 3e-04
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 12/107 (11%)
Query: 456 PNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDRLV 512
+ F+K+P V + K D + G P+ +WFK +++
Sbjct: 6 SGAEEPTGVFLKKPDSVSVETGK-----DAVVVAKVNGKELPDKPTIKWFKGKWLELGSK 60
Query: 513 ANL---IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 556
+ + + L I + DRG Y + K
Sbjct: 61 SGARFSFKESHNSASNVYTVELHIGKV-VLGDRGYYRLEVKAKDTCD 106
Score = 40.2 bits (93), Expect = 3e-04
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 181 ENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPN---PSYEWFKEDYVQDR 237
+ F+K+P V + K D + G P+ +WFK +++
Sbjct: 4 GSSGAEEPTGVFLKKPDSVSVETGK-----DAVVVAKVNGKELPDKPTIKWFKGKWLELG 58
Query: 238 LVANL---IDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSI 283
+ + + L I + DRG Y + K
Sbjct: 59 SKSGARFSFKESHNSASNVYTVELHIGKV-VLGDRGYYRLEVKAKDTCD 106
Score = 37.5 bits (86), Expect = 0.003
Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 21/109 (19%)
Query: 673 PNNFPKTFPEAPK-----AGDKVRLECVAFGYPV---PSYNWTR---------RGSPLPR 715
F + P G + G + P+ W + G+
Sbjct: 8 AEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSF 67
Query: 716 NAYFENFNRI----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQA 760
+ + + L I V + D+G Y + I ++A
Sbjct: 68 KESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 40.2 bits (93), Expect = 3e-04
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 686 AGDKVRLEC-VAFGYPVPSYNWTR----RGSPLP--RNAYFENFNR---ILTIPNVKVED 735
AGD LEC V + P W + L + ++ E N IL V D
Sbjct: 25 AGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPND 84
Query: 736 QGEYICRASNDRSALES-SVTISI 758
G Y C A+ + +ES S T+ +
Sbjct: 85 NGSYRCSANFQSNLIESHSTTLYV 108
Score = 30.6 bits (68), Expect = 0.66
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 262 DPRQVEDRGSYHCKASNKFGSIISESVQLAF 292
+P D GSY C A+ + I S S L
Sbjct: 78 EPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108
Score = 30.6 bits (68), Expect = 0.66
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 535 DPRQVEDRGSYHCKASNKFGSIISESVQLAF 565
+P D GSY C A+ + I S S L
Sbjct: 78 EPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 41.8 bits (98), Expect = 4e-04
Identities = 23/130 (17%), Positives = 36/130 (27%), Gaps = 16/130 (12%)
Query: 687 GDKVRLECVAFGYPVPS---YNWTRRGSPLPRNAYFENFN-------RILTIPNVKVEDQ 736
G + L C G S + WT E +L
Sbjct: 19 GSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHG 78
Query: 737 GEYICRASNDRSALESSVTISIQAEPN----FTIPLTDKHMDNQADLTWTCEA--FGVPD 790
+ C A+ S + T+S +P + + +T TC A F D
Sbjct: 79 KTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKD 138
Query: 791 VTYSWFRNGE 800
V W + +
Sbjct: 139 VLVRWLQGSQ 148
Score = 29.8 bits (67), Expect = 2.6
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 8/92 (8%)
Query: 192 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK-EDYVQDRLVANLIDPLSDKR 250
+ +P L L+C G + S F V +
Sbjct: 7 SLHRPALEDLLLGSE-----ANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGC 61
Query: 251 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 282
+++S L ++ C A+
Sbjct: 62 YSVS-SVLPGC-AEPWNHGKTFTCTAAYPESK 91
Score = 29.8 bits (67), Expect = 2.6
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 8/92 (8%)
Query: 465 FIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK-EDYVQDRLVANLIDPLSDKR 523
+ +P L L+C G + S F V +
Sbjct: 7 SLHRPALEDLLLGSE-----ANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGC 61
Query: 524 FTLSGGNLIINDPRQVEDRGSYHCKASNKFGS 555
+++S L ++ C A+
Sbjct: 62 YSVS-SVLPGC-AEPWNHGKTFTCTAAYPESK 91
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 40.5 bits (95), Expect = 5e-04
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 40 CYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMYQL------FW---QDPQRRK 90
Y T ++A C+ + L + + +E ++ L +W +
Sbjct: 2 SYNTSTEA-MTYDEASAYCQQRYTHLVAIQNKEEIEYLNSILSYSPSYYWIGIRK-VNNV 59
Query: 91 WYFGGTQQSPN 101
W + GTQ+
Sbjct: 60 WVWVGTQKPLT 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 5e-04
Identities = 84/673 (12%), Positives = 165/673 (24%), Gaps = 234/673 (34%)
Query: 158 EASIQKLHY--LLND-------DRTYQYGMDIENP-------DKIPRGPYFIKQPTDVVF 201
E + Y +L+ + + D+ D I + T +F
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-TLRLF 68
Query: 202 DLSKRSILNDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIIN 261
+ + + +Y++ + P R + + + N
Sbjct: 69 WTLLSK--QEEMVQKFVEEVLRINYKFLMS-----PIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 262 D-----PRQVEDRGSYHCKASNK-----------------FG-SII------SESVQLAF 292
D V R + K G + + S VQ
Sbjct: 122 DNQVFAKYNVS-RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 293 GF------IGEFN--------LKRAPEIGNQNWGKAMFCDPPTNYPGVNYYWARDYFPNF 338
F + N L++ + NW D +N + + +
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR--SDHSSNIK-LRIHSIQAELRRL 237
Query: 339 VEEDKRVFVSYDGALYFSAL---------EQIDAGNYSCNV-----QSKVSD--TGRNGP 382
++ Y + L + +A N SC + +V+D +
Sbjct: 238 LKSKP----------YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 383 FFPL----KVFPHSNFQQL--KFPNNFPKTFPEAPKAGDKVRLECVA---FGYPVPSYNW 433
L + L K+ + P+ P + RL +A NW
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 434 TRRGSPLPRNAYFENFNRILTI------PNVKMRGPY-----FIKQPTDVVFDLSKRSIL 482
++ + I+ P R + F P
Sbjct: 348 --------KHVNCDKLTTIIESSLNVLEPAE-YRKMFDRLSVF---PPSA---------- 385
Query: 483 NDI---TLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLS-----DKRFTLSGGNLIIN 534
I LS WF +V N + S K T+S ++ +
Sbjct: 386 -HIPTILLSLI----------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 535 DPRQVEDRGSYHCKASNKFGSIISESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPT 594
++E+ + H + +N+ + + +
Sbjct: 435 LKVKLENEYALHRS------------------IVDHYNIPKTFD----SDDLIP--PYLD 470
Query: 595 NYPGVNYYW----------ARDYFPNFVEEDKRVFVSYDGALYFSALEQ-IDAGNYSCNV 643
Y +Y + F + VF+ + F LEQ I + + N
Sbjct: 471 QY----FYSHIGHHLKNIEHPERMTLF----RMVFLDFR----F--LEQKIRHDSTAWNA 516
Query: 644 QSKVSDT-----------GRNGPFFPLKV-----F-----------PHSNFQQLKFPNNF 676
+ +T N P + V F +++ ++
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 677 PKTFPEAPKAGDK 689
F EA K +
Sbjct: 577 EAIFEEAHKQVQR 589
Score = 42.5 bits (99), Expect = 6e-04
Identities = 63/469 (13%), Positives = 124/469 (26%), Gaps = 162/469 (34%)
Query: 18 FSQTIDELE-LRCPQHWVQYRDSCYRFVKSPLKTR--------NDAK------LNCKSL- 61
++ D ++ H +Q R +KS +AK L+CK L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 62 ---DSDLANVNDADEHGFIMYQLFWQDPQRRKWYFGGTQ-QSPNL---WVNEDGTNLNEL 114
+ + A + T + +L +++
Sbjct: 271 TTRFKQVTDFLSAAT----TTHISLDHHSM-----TLTPDEVKSLLLKYLD--------C 313
Query: 115 DAAFLPEPADNV---QRDYLAYSFSQSLKRWGFERVTGMEPLLFICEASIQKLHYLLNDD 171
LP + +A S L W + + L I E+S+ L +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--AEY 371
Query: 172 RTYQYGMDIENPD-KIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFK 230
R + + P I PT ++ S++ WF
Sbjct: 372 RKMFDRLSVFPPSAHI---------PTILL------SLI------------------WFD 398
Query: 231 EDYVQDRLVANLIDPLS-----DKRFTLSGGNLIINDPRQVEDRGSYHCKASNKFGSIIS 285
+V N + S K T+S ++ + ++E+ + H
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS---------- 448
Query: 286 ESVQLAFGFIGEFNLKRAPEIGNQNWGKAMFCDPPTNYPGVNYYW----------ARDYF 335
+ +N+ + + + Y +Y +
Sbjct: 449 --------IVDHYNIPKTFD----SDDLIP--PYLDQY----FYSHIGHHLKNIEHPERM 490
Query: 336 PNFVEEDKRVFVSYDGALYFSALEQ-IDAGNYSCNVQSKVSDT-----------GRNGPF 383
F + VF+ + F LEQ I + + N + +T N P
Sbjct: 491 TLF----RMVFLDFR----F--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 384 FPLKV-----F-----------PHSNFQQLKFPNNFPKTFPEAPKAGDK 416
+ V F +++ ++ F EA K +
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 32.9 bits (74), Expect = 0.47
Identities = 47/382 (12%), Positives = 89/382 (23%), Gaps = 109/382 (28%)
Query: 447 ENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEWFKEDY 506
E + I+ + T +F + + + +Y++
Sbjct: 49 EEIDHIIMSKDAVSG--------TLRLFWTLLSK--QEEMVQKFVEEVLRINYKFLMS-- 96
Query: 507 VQDRLVANLIDPLSDKRFTLSGGNLIIND-----PRQVEDRGSYHCKASNK--------- 552
+ P R + + + ND V R + K
Sbjct: 97 ---PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQPYLKLRQALLELRPAKN 152
Query: 553 --------FG-SII------SESVQLAFGF------IGEFN--------LKRAPEIGNQN 583
G + + S VQ F + N L++ + N
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 584 WGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSAL---------EQI 634
W D +N + + + ++ Y + L +
Sbjct: 213 WTSR--SDHSSNIK-LRIHSIQAELRRLLKSKP----------YENCLLVLLNVQNAKAW 259
Query: 635 DAGNYSCNVQSKVSDTGRN-GPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLE 693
+A N SC K+ T R L ++ T E K L+
Sbjct: 260 NAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKY-LD 312
Query: 694 CVAFGYPVPSYNWTRRGSPL-------------PRNAYFE--NFNRILTIPNVKVEDQGE 738
C P +P ++ N +++ TI +
Sbjct: 313 CRPQDLPRE----VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 739 YICRAS-NDRSALESSVTISIQ 759
R + S S I
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTI 390
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 40.6 bits (95), Expect = 7e-04
Identities = 25/178 (14%), Positives = 41/178 (23%), Gaps = 31/178 (17%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSD 649
C Y R+ + G ++ G Y C S
Sbjct: 26 CQGGQ--ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD--- 80
Query: 650 TGRNGPFFPLKVFPHSNFQQLKFPNNFPK-----TFPEAPKAGDKVRLECVAFGYPV--- 701
S+ +L + K +G V L+C +
Sbjct: 81 --------TAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFI 132
Query: 702 ------PSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESS 753
+ P R + F ++ V + Y C A + S E S
Sbjct: 133 LCKEGEDEHPQCLNSQPHARGSSRAIF----SVGPVSPSRRWWYRCYAYDSNSPYEWS 186
Score = 37.1 bits (86), Expect = 0.012
Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 12/126 (9%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLP---RNAYFENFNRILTIPNVKVEDQGEYICRA 743
G V L C G Y R P R IP++ E G Y C
Sbjct: 19 GSPVTLRCQG-GQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYY 77
Query: 744 SND------RSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGVPDVTYSWFR 797
+D S V +P + +++ ++T C++ V + +
Sbjct: 78 GSDTAGRSESSDPLELVVTGAYIKPTLSA-QPSPVVNSGGNVTLQCDS-QVAFDGFILCK 135
Query: 798 NGELGH 803
GE H
Sbjct: 136 EGEDEH 141
Score = 29.8 bits (67), Expect = 2.4
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 16/86 (18%)
Query: 212 ITLSCYAGGYPNPSYEWFKED---YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 268
+TL C + KE + Q S F++ P
Sbjct: 118 VTLQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVG--------PVSPSR 168
Query: 269 RGSYHCKASNKFG----SIISESVQL 290
R Y C A + S+ S+ ++L
Sbjct: 169 RWWYRCYAYDSNSPYEWSLPSDLLEL 194
Score = 29.8 bits (67), Expect = 2.4
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 16/86 (18%)
Query: 485 ITLSCYAGGYPNPSYEWFKED---YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVED 541
+TL C + KE + Q S F++ P
Sbjct: 118 VTLQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVG--------PVSPSR 168
Query: 542 RGSYHCKASNKFG----SIISESVQL 563
R Y C A + S+ S+ ++L
Sbjct: 169 RWWYRCYAYDSNSPYEWSLPSDLLEL 194
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 38.7 bits (90), Expect = 0.001
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 687 GDKVRLECV--AFGYPVPSYNWTRRGSPLPRNAYFENF---------NRI-------LTI 728
G + L+C + V NW ++ L + +R+ LT+
Sbjct: 18 GGSIILQCHLSSTTAQVTQVNWEQQDQLLA--ICNADLGWHISPSFKDRVAPGPGLGLTL 75
Query: 729 PNVKVEDQGEYICR-ASNDRSALESSVTISIQAEP 762
++ V D GEY C + + + +
Sbjct: 76 QSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110
Score = 33.0 bits (75), Expect = 0.11
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 211 DITLSCYAGGYPNPSY--EWFKEDYVQDRLVANL---IDPLSDKRFTLSG-GNLIINDPR 264
I L C+ W ++D + A+L I P R L +
Sbjct: 20 SIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLT 79
Query: 265 QVEDRGSYHCKASNKFGSIISESVQL 290
V D G Y C + + L
Sbjct: 80 -VNDTGEYFCIYHTYPDGTYTGRIFL 104
Score = 33.0 bits (75), Expect = 0.11
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 484 DITLSCYAGGYPNPSY--EWFKEDYVQDRLVANL---IDPLSDKRFTLSG-GNLIINDPR 537
I L C+ W ++D + A+L I P R L +
Sbjct: 20 SIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLT 79
Query: 538 QVEDRGSYHCKASNKFGSIISESVQL 563
V D G Y C + + L
Sbjct: 80 -VNDTGEYFCIYHTYPDGTYTGRIFL 104
Score = 28.7 bits (64), Expect = 2.6
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 344 RVFVSYDGALYFSALEQIDAGNYSCNVQS 372
RV L +L D G Y C +
Sbjct: 64 RVAPGPGLGLTLQSLTVNDTGEYFCIYHT 92
Score = 28.7 bits (64), Expect = 2.6
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 617 RVFVSYDGALYFSALEQIDAGNYSCNVQS 645
RV L +L D G Y C +
Sbjct: 64 RVAPGPGLGLTLQSLTVNDTGEYFCIYHT 92
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 39.9 bits (93), Expect = 0.001
Identities = 29/132 (21%), Positives = 37/132 (28%), Gaps = 10/132 (7%)
Query: 626 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEA-P 684
S + Q AG Y C S + P PL + + P
Sbjct: 65 FSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIV-----IIGLYEKPSLSAQPGPTV 119
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRRGSPLPR---NAYFENFNRILTIPNVKVEDQGEYIC 741
AG+ V L C + Y+ +R G R N P G Y C
Sbjct: 120 LAGENVTLSCSS-RSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
Query: 742 RASNDRSALESS 753
S S E S
Sbjct: 179 FGSFHDSPYEWS 190
Score = 36.8 bits (85), Expect = 0.013
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 16/127 (12%)
Query: 687 GDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNR-----ILTIPNVKVEDQGEYIC 741
+ V L+C + + R G + +I + + G Y C
Sbjct: 22 EETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRC 80
Query: 742 RASNDRSALESS-----VTISIQAE---PNFTIPLTDKHMDNQADLTWTCEAFGVPDVTY 793
S S + S + I I P+ + + ++T +C + Y
Sbjct: 81 YGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQ-PGPTVLAGENVTLSCSS-RSSYDMY 138
Query: 794 SWFRNGE 800
R GE
Sbjct: 139 HLSREGE 145
Score = 32.6 bits (74), Expect = 0.30
Identities = 26/165 (15%), Positives = 46/165 (27%), Gaps = 19/165 (11%)
Query: 212 ITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ L C+ + +E RL+ D +S F++S +
Sbjct: 25 VILQCW-SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSIS--------RMTQDLA 75
Query: 270 GSYHCKASNKFG----SIISESVQL-AFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPTNY 323
G+Y C S S S+ + + G + +L P C
Sbjct: 76 GTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSR--S 133
Query: 324 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
Y+ +R+ + V+ F G Y C
Sbjct: 134 SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
Score = 32.6 bits (74), Expect = 0.30
Identities = 26/165 (15%), Positives = 46/165 (27%), Gaps = 19/165 (11%)
Query: 485 ITLSCYAGGYPNPSYEWFKED--YVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
+ L C+ + +E RL+ D +S F++S +
Sbjct: 25 VILQCW-SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSIS--------RMTQDLA 75
Query: 543 GSYHCKASNKFG----SIISESVQL-AFGFIGEFNLKRAPEIGNQNWGKAMF-CDPPTNY 596
G+Y C S S S+ + + G + +L P C
Sbjct: 76 GTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSR--S 133
Query: 597 PGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 641
Y+ +R+ + V+ F G Y C
Sbjct: 134 SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
Score = 28.3 bits (63), Expect = 8.1
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 13/84 (15%)
Query: 211 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 270
++TLSC Y +E +R + + G G
Sbjct: 124 NVTLSCS-SRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGP--------ATHGG 174
Query: 271 SYHCKASNKFG----SIISESVQL 290
+Y C S S S+ + +
Sbjct: 175 TYRCFGSFHDSPYEWSKSSDPLLV 198
Score = 28.3 bits (63), Expect = 8.1
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 13/84 (15%)
Query: 484 DITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRG 543
++TLSC Y +E +R + + G G
Sbjct: 124 NVTLSCS-SRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGP--------ATHGG 174
Query: 544 SYHCKASNKFG----SIISESVQL 563
+Y C S S S+ + +
Sbjct: 175 TYRCFGSFHDSPYEWSKSSDPLLV 198
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 40.0 bits (93), Expect = 0.002
Identities = 26/195 (13%), Positives = 47/195 (24%), Gaps = 28/195 (14%)
Query: 626 LYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPK 685
L S + Y+C V + G F ++ + P
Sbjct: 74 LTLSQKHWLSDRTYTCQVTYQ-------GHTFEDSTKKCADSNPRGVSAYLSRPSPFDLF 126
Query: 686 AGDKVRLECVAFGYPVPSYN----WTRRGSPLPRNAYFENFNR----------ILTIPNV 731
+ C+ W+R P N + L +
Sbjct: 127 IRKSPTITCLVVDLAPSKGTVQLTWSRASGK-PVNHSTRKEEKQRNGTLTVTSTLPVGTR 185
Query: 732 KVEDQGEYICRASNDRSALESSVTISIQ----AEPNFTIPLTDKHMDNQADLTWTCEA-- 785
+ Y CR ++ + + A P T + ++ T C
Sbjct: 186 DWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQN 245
Query: 786 FGVPDVTYSWFRNGE 800
F D++ W N
Sbjct: 246 FMPEDISVQWLHNEV 260
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 37.5 bits (86), Expect = 0.003
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 686 AGDKVRLEC-VAFGYPVPSYNWTR---------RGSPLPRNAYFENFNR---ILTIPNVK 732
G+ ++EC V + P+ W + P ++ EN + +L +
Sbjct: 28 TGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIH 87
Query: 733 VEDQGEYICRASNDRSALES-SVTISI 758
+ D G Y C + + + S SVTI +
Sbjct: 88 LSDNGSYSCSTNFNSQVINSHSVTIHV 114
Score = 27.9 bits (61), Expect = 6.0
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 262 DPRQVEDRGSYHCKASNKFGSIISESVQLAF 292
P + D GSY C + I S SV +
Sbjct: 84 KPIHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
Score = 27.9 bits (61), Expect = 6.0
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 535 DPRQVEDRGSYHCKASNKFGSIISESVQLAF 565
P + D GSY C + I S SV +
Sbjct: 84 KPIHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 39.2 bits (90), Expect = 0.005
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 663 PHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNA-YFEN 721
PH K + AP + L C +Y+W + + ++
Sbjct: 493 PHKECPNPKPDKAPLQKVSLAPN--SRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQS 549
Query: 722 FNRILTIPNVKVEDQGEYICRA 743
N IL I N+ + G Y C A
Sbjct: 550 PNCILFIENLTAQQYGHYFCEA 571
Score = 30.0 bits (66), Expect = 4.2
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 15/120 (12%)
Query: 157 CEASIQKLHYLLNDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSC 216
C + + + +R+ ++ P K P K P V + + LSC
Sbjct: 467 CGWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVS----LAPNSRYYLSC 522
Query: 217 YAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 276
+ +Y W ++ N+ + + I N + G Y C+A
Sbjct: 523 PMES-RHATYSWRHKE--------NVEQSCEPGHQSPNCILFIENL--TAQQYGHYFCEA 571
Score = 29.6 bits (65), Expect = 5.0
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
+ LSC + +Y W ++ N+ + + I N +
Sbjct: 516 SRYYLSCPMES-RHATYSWRHKE--------NVEQSCEPGHQSPNCILFIENL--TAQQY 564
Query: 543 GSYHCKA 549
G Y C+A
Sbjct: 565 GHYFCEA 571
Score = 28.8 bits (63), Expect = 8.3
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
C + + Y W N + + S + L+ L G+Y C
Sbjct: 522 CPMESRHA--TYSWRHK--ENVEQSCEPGHQSPNCILFIENLTAQQYGHYFC 569
Score = 28.8 bits (63), Expect = 8.3
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 641
C + + Y W N + + S + L+ L G+Y C
Sbjct: 522 CPMESRHA--TYSWRHK--ENVEQSCEPGHQSPNCILFIENLTAQQYGHYFC 569
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 38.7 bits (90), Expect = 0.006
Identities = 34/199 (17%), Positives = 51/199 (25%), Gaps = 32/199 (16%)
Query: 633 QIDAGNYSCNVQ---SKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGD- 688
+ + +CNV S + P P P F PK D
Sbjct: 192 TWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDV 251
Query: 689 -----KVRLECVAFGYPVPSY----NWTRRGSPLPRNAYF---ENFNR------ILTIPN 730
+ CV +W + E++N L I +
Sbjct: 252 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQH 311
Query: 731 VKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI------PLTDKHMDNQADLTWTCE 784
E+ C+ +N TIS P ++ Q L TC
Sbjct: 312 QDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTL--TCM 369
Query: 785 A--FGVPDVTYSWFRNGEL 801
F D+ W NG+
Sbjct: 370 VTDFMPEDIYVEWTNNGKT 388
Score = 29.9 bits (67), Expect = 3.8
Identities = 29/168 (17%), Positives = 45/168 (26%), Gaps = 42/168 (25%)
Query: 673 PNNFPKTFPEAPKAGDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNAYFENFNRI----- 725
P+ +P G V L C+ GY P P + W ++ F +
Sbjct: 124 PSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS----LSSGVHTFPAVLQSDL 179
Query: 726 ------LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFT-------------- 765
+T+ + Q C ++ S+ + I +
Sbjct: 180 YTLSSSVTVTSSTWPSQ-SITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGG 238
Query: 766 ------IPLTDKHMDNQADLTWTCEAFGV----PDVTYSWFRNGELGH 803
P + TC V PDV SWF N H
Sbjct: 239 PSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVH 286
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 39.0 bits (89), Expect = 0.007
Identities = 16/146 (10%), Positives = 36/146 (24%), Gaps = 12/146 (8%)
Query: 640 SCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFGY 699
+ + + S + F L+C
Sbjct: 505 TATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHG----GTAELKCSQKS- 559
Query: 700 PVPSYNWTRRGSPLPRNA--YFENFNRILTIPNVKVEDQGEYICRA-----SNDRSALES 752
+ W + L + Y + L I N+ D G Y C + + + +
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVA 619
Query: 753 SVTISIQAEPNFTIPLTDKHMDNQAD 778
+ ++ P + T + +
Sbjct: 620 KHVLEVKVVPKPVVAPTLSVVQTEGS 645
Score = 35.1 bits (79), Expect = 0.097
Identities = 12/108 (11%), Positives = 25/108 (23%), Gaps = 10/108 (9%)
Query: 169 NDDRTYQYGMDIENPDKIPRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW 228
++ + + L C W
Sbjct: 508 CVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFW 566
Query: 229 FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 276
++ ++ S K + NL+I + + D G Y C +
Sbjct: 567 KFQN--------GVLKAESPKYGLMGRKNLLIFNLSE-GDSGVYQCLS 605
Score = 35.1 bits (79), Expect = 0.10
Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 10/108 (9%)
Query: 442 RNAYFENFNRILTIPNVKMRGPYFIKQPTDVVFDLSKRSILNDITLSCYAGGYPNPSYEW 501
A + + + + + L C W
Sbjct: 508 CVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFW 566
Query: 502 FKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 549
++ ++ S K + NL+I + + D G Y C +
Sbjct: 567 KFQN--------GVLKAESPKYGLMGRKNLLIFNLSE-GDSGVYQCLS 605
Score = 33.2 bits (74), Expect = 0.39
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 317 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 368
C +N +W E K + L L + D+G Y C
Sbjct: 555 CSQKSNLA--RVFWKFQNGVLKAESPKYGLMGRKN-LLIFNLSEGDSGVYQC 603
Score = 33.2 bits (74), Expect = 0.39
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 590 CDPPTNYPGVNYYWARDYFPNFVEEDKRVFVSYDGALYFSALEQIDAGNYSC 641
C +N +W E K + L L + D+G Y C
Sbjct: 555 CSQKSNLA--RVFWKFQNGVLKAESPKYGLMGRKN-LLIFNLSEGDSGVYQC 603
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 38.2 bits (87), Expect = 0.007
Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 15/133 (11%)
Query: 677 PKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQ 736
+P+AP G+ V L C WT S + + LTI + D
Sbjct: 13 LDWYPDAP--GEMVVLTCD--TPEEDGITWTLDQSSEVLGSG-----KTLTIQVKEFGDA 63
Query: 737 GEYICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWT--CEAFGVP-DVTY 793
G+Y C + S + + + + + CEA T
Sbjct: 64 GQYTCHKGGEVL---SHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTC 120
Query: 794 SWFRNGELGHQMT 806
W +
Sbjct: 121 WWLTTISTDLTFS 133
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 38.3 bits (89), Expect = 0.010
Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 28/152 (18%)
Query: 629 SALEQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP---- 684
S LE D +Y C + ++ G + V P P
Sbjct: 75 SGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKAN--------PTVTLFPPSSEE 126
Query: 685 KAGDKVRLECVAFGY-PVP-SYNWTRRGSPLPRNAYFENFNRI------------LTIPN 730
+K L C+ + P + W GSP+ A E L++
Sbjct: 127 LQANKATLVCLISDFYPGAVTVAWKADGSPV--KAGVETTKPSKQSNNKYAASSYLSLTP 184
Query: 731 VKVEDQGEYICRASNDRSALESSVTISIQAEP 762
+ + Y C+ +++ S +E +V + +
Sbjct: 185 EQWKSHRSYSCQVTHEGSTVEKTVAPTECSAS 216
Score = 37.9 bits (88), Expect = 0.012
Identities = 45/184 (24%), Positives = 60/184 (32%), Gaps = 32/184 (17%)
Query: 639 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 698
Y CNV K S+T KV L FP + + CV
Sbjct: 295 YICNVNHKPSNT---------KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVD 345
Query: 699 Y----PVPSYNWTRRGSPL------PRNAYFENFNRI---LTIPNVKVEDQGEYICRASN 745
P +NW G + PR + + R+ LT+ + D EY C+ SN
Sbjct: 346 VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSN 405
Query: 746 DRSALESSVTISI----QAEPNFTI--PLTDKHMDNQADLTWTCEA--FGVPDVTYSWFR 797
TIS EP P ++ NQ L TC F D+ W
Sbjct: 406 KALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSL--TCLVKGFYPSDIAVEWES 463
Query: 798 NGEL 801
NG+
Sbjct: 464 NGQP 467
Score = 33.3 bits (76), Expect = 0.35
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSALE-----SSVTIS--IQAEPNFTIPLTDKHMDNQAD 778
L I ++ ED+ +Y C + N + VT+ +A P T+
Sbjct: 72 LAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANK 131
Query: 779 LTWTCEAFGV-P-DVTYSWFRNG 799
T C P VT +W +G
Sbjct: 132 ATLVCLISDFYPGAVTVAWKADG 154
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 37.4 bits (87), Expect = 0.012
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 623 DGALYFSALEQIDAGNYSCNVQSKVSDTGRNGPFFPL--KVFPHSNFQQLKFPNNFPKTF 680
+L S L D +Y C + D + F K+ + FP +
Sbjct: 90 SASLAISGLRSEDEADYYC--AT--WDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSS 145
Query: 681 PEAPKAGDKVRLECVAFGYPVPSY--NWTRRGSPLPRNAYFENFNRI----------LTI 728
E +K L C+ + + W G+P+ ++ L++
Sbjct: 146 EELQ--ANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSL 203
Query: 729 PNVKVEDQGEYICRASNDRSALESSV 754
+ + Y C+ +++ S +E +V
Sbjct: 204 TPEQWKSHRSYSCQVTHEGSTVEKTV 229
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 35.6 bits (82), Expect = 0.012
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 28/104 (26%)
Query: 687 GDKVRLECVAFGYPVPSYN-----WTRRGSPLP-------RNAYFENFNRI--------- 725
GD V L C + + W R G + + R+
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 726 ------LTIPNVKVEDQGEYICRASNDRS-ALESSVTISIQAEP 762
L + ++VED+G Y C + + + + A+P
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 29.8 bits (67), Expect = 1.2
Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 18/97 (18%)
Query: 211 DITLSCY-----AGGYPNPSYEWFKEDYVQDRLVANLIDPLS---DKRF---------TL 253
+TL CY W + V + S KR L
Sbjct: 17 SVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAEL 76
Query: 254 SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 290
+L + +VED G+Y C S + L
Sbjct: 77 RNASLRMFGL-RVEDEGNYTCLFVTFPQGSRSVDIWL 112
Score = 29.8 bits (67), Expect = 1.2
Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 18/97 (18%)
Query: 484 DITLSCY-----AGGYPNPSYEWFKEDYVQDRLVANLIDPLS---DKRF---------TL 526
+TL CY W + V + S KR L
Sbjct: 17 SVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAEL 76
Query: 527 SGGNLIINDPRQVEDRGSYHCKASNKFGSIISESVQL 563
+L + +VED G+Y C S + L
Sbjct: 77 RNASLRMFGL-RVEDEGNYTCLFVTFPQGSRSVDIWL 112
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 35.7 bits (82), Expect = 0.019
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLTD 770
L I NV+ D+G Y C + E++V + ++ + P
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPGRS 131
Score = 27.6 bits (61), Expect = 8.7
Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 18/82 (21%)
Query: 211 DITLSCY---AGGYPNPSYEWFKED-------YVQDRLVANLIDPLSDKRFT-----LSG 255
+ L C W++ Y + P R +
Sbjct: 23 EAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGE 82
Query: 256 GN--LIINDPRQVEDRGSYHCK 275
G L I + R D G Y C
Sbjct: 83 GKVALRIQNVR-FSDEGGYTCF 103
Score = 27.6 bits (61), Expect = 8.7
Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 18/82 (21%)
Query: 484 DITLSCY---AGGYPNPSYEWFKED-------YVQDRLVANLIDPLSDKRFT-----LSG 528
+ L C W++ Y + P R +
Sbjct: 23 EAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGE 82
Query: 529 GN--LIINDPRQVEDRGSYHCK 548
G L I + R D G Y C
Sbjct: 83 GKVALRIQNVR-FSDEGGYTCF 103
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 36.4 bits (84), Expect = 0.022
Identities = 22/144 (15%), Positives = 37/144 (25%), Gaps = 19/144 (13%)
Query: 676 FPKTFPEAPKAGDKVRLECVAFGYPVPSYN----WTRRGSPLPRNAYFENFNR------- 724
FP + ++ CV W + +
Sbjct: 7 FPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRS 66
Query: 725 --ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ----AEPNFTIPLTDKHMDNQAD 778
L I + + E+ CR ++ TIS P K +
Sbjct: 67 VSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDK 126
Query: 779 LTWTCEAFGV--PDVTYSWFRNGE 800
++ TC D+T W NG+
Sbjct: 127 VSLTCMITDFFPEDITVEWESNGQ 150
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 36.5 bits (84), Expect = 0.033
Identities = 25/181 (13%), Positives = 42/181 (23%), Gaps = 23/181 (12%)
Query: 637 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVA 696
G + K R L P + DK C
Sbjct: 268 GEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPA------VQDLWLRDKATFTCFV 321
Query: 697 FGYPVPSYN--WTRRGSPLPRNAY----FENFNR------ILTIPNVKVEDQGEYICRAS 744
G + + W G + N LT+P C +
Sbjct: 322 VGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLN 381
Query: 745 NDRSALESSVTIS---IQAEPNFTIPLTDKHMDNQADLTWTCEA--FGVPDVTYSWFRNG 799
+ + + + QA ++ L +A CE F P++ W +
Sbjct: 382 HPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLMWLEDQ 441
Query: 800 E 800
Sbjct: 442 R 442
Score = 31.1 bits (70), Expect = 1.8
Identities = 25/171 (14%), Positives = 48/171 (28%), Gaps = 38/171 (22%)
Query: 632 EQIDAGNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVR 691
+Q G Y C VQ S + + +P + P+A +
Sbjct: 204 QQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQA-----------SSVPTAQPQAEGSLA 252
Query: 692 LECVAFGYPVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALE 751
A P + N R G K +++ E R +
Sbjct: 253 KATTA---PATTRNTGRGGE-----------------EKKKEKEKEEQEERETKTPECPS 292
Query: 752 SSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFRNGE 800
+ + + + + + + + T+TC G D +W G+
Sbjct: 293 HTQPLGV-----YLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGK 338
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 35.8 bits (82), Expect = 0.040
Identities = 21/140 (15%), Positives = 39/140 (27%), Gaps = 20/140 (14%)
Query: 681 PEAPKAGDKVRLECVAFGYPVPS---YNWTRRGS------PLPRNAYFENFNRI---LTI 728
P +L C+ P S WTR S P+ +F + +
Sbjct: 22 PGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPV 81
Query: 729 PNVKVEDQGEYICRASNDRSALESSVTISIQAEPN-----FTIPLTDKHMDNQADLTWTC 783
+ C ++ L S ++ P + + + +T +C
Sbjct: 82 STQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLS-RVTLSC 140
Query: 784 EAFGV--PDVTYSWFRNGEL 801
G D+ W R+
Sbjct: 141 LVRGFRPRDIEIRWLRDHRA 160
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 33.7 bits (77), Expect = 0.060
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTI 756
+ + N+++ D G Y C+ + +
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 33.6 bits (77), Expect = 0.061
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 212 ITLSCY--AGGYPNPSYEWFKE---------DYVQDRLVANLIDPLSDKRFTLSGGNLII 260
+T++C + W++ + R V + K F+L I
Sbjct: 18 LTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETV--NKGSKSFSLR-----I 70
Query: 261 NDPRQVEDRGSYHCKASNKFGS 282
+D +VED G+Y C+A F +
Sbjct: 71 SDL-RVEDSGTYKCQAFYVFFA 91
Score = 33.6 bits (77), Expect = 0.061
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 485 ITLSCY--AGGYPNPSYEWFKE---------DYVQDRLVANLIDPLSDKRFTLSGGNLII 533
+T++C + W++ + R V + K F+L I
Sbjct: 18 LTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETV--NKGSKSFSLR-----I 70
Query: 534 NDPRQVEDRGSYHCKASNKFGS 555
+D +VED G+Y C+A F +
Sbjct: 71 SDL-RVEDSGTYKCQAFYVFFA 91
Score = 27.4 bits (61), Expect = 8.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSA 749
L I +++VED G Y C+A A
Sbjct: 68 LRISDLRVEDSGTYKCQAFYVFFA 91
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 33.8 bits (77), Expect = 0.064
Identities = 18/110 (16%), Positives = 29/110 (26%), Gaps = 34/110 (30%)
Query: 686 AGDKVRLECVAFGYPVPSYN-----WTRRGSPLPRNAYFENF--------------NRI- 725
G +V L C F + W + ++ RI
Sbjct: 13 VGSQVTLHCS-FWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQ 71
Query: 726 -----------LTIPNVKVEDQGEYICRASN--DRSALESSVTISIQAEP 762
+ I N+ D G + C N D S VT+ + +
Sbjct: 72 WVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
Score = 31.9 bits (72), Expect = 0.31
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 310 NWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV-FVSY----DGALYFSALEQIDAG 364
W +Y + Y +R+ +V DG++ L+ D G
Sbjct: 36 TWRY-QPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNG 94
Query: 365 NYSCNVQSKVSDTGRNGPFFPLKVFP 390
++C+V++ D L VF
Sbjct: 95 TFTCDVKNP-PDIVGKTSQVTLYVFE 119
Score = 31.9 bits (72), Expect = 0.31
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 583 NWGKAMFCDPPTNYPGVNYYWARDYFPNFVEEDKRV-FVSY----DGALYFSALEQIDAG 637
W +Y + Y +R+ +V DG++ L+ D G
Sbjct: 36 TWRY-QPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNG 94
Query: 638 NYSCNVQSKVSDTGRNGPFFPLKVFP 663
++C+V++ D L VF
Sbjct: 95 TFTCDVKNP-PDIVGKTSQVTLYVFE 119
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 33.4 bits (76), Expect = 0.082
Identities = 23/101 (22%), Positives = 30/101 (29%), Gaps = 24/101 (23%)
Query: 686 AGDKVRLECVAFGYPVPSY-NWTRRGSPLP-----------RNAYFENFNRI-------- 725
G V L C Y + W R P ++ +R
Sbjct: 11 VGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISE 70
Query: 726 ----LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
LTI N D G Y CR + VT S+Q +P
Sbjct: 71 GDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111
Score = 29.9 bits (67), Expect = 1.3
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 211 DITLSC-YAGGYPNPSYEWFKEDYVQDRLVANLI-------DPLSDKRFTLSG----GN- 257
+TL C Y+ + W + LI R+ L G G+
Sbjct: 14 PVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDV 73
Query: 258 -LIINDPRQVEDRGSYHCK 275
L I + D G Y C+
Sbjct: 74 SLTIENS-VESDSGLYCCR 91
Score = 29.9 bits (67), Expect = 1.3
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 484 DITLSC-YAGGYPNPSYEWFKEDYVQDRLVANLI-------DPLSDKRFTLSG----GN- 530
+TL C Y+ + W + LI R+ L G G+
Sbjct: 14 PVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDV 73
Query: 531 -LIINDPRQVEDRGSYHCK 548
L I + D G Y C+
Sbjct: 74 SLTIENS-VESDSGLYCCR 91
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 33.4 bits (76), Expect = 0.094
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 726 LTIPNVKVEDQGEYICRASN 745
L + + VED+G Y C +
Sbjct: 95 LALHGLTVEDEGNYTCEFAT 114
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 34.5 bits (79), Expect = 0.094
Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 19/145 (13%)
Query: 676 FPKTFPEAPKAGDKVRLECVAFGYPVPSYN----WTRRGSPLPRNA--YFENFNR----- 724
FP + G ++ CV W + E +
Sbjct: 21 FPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRS 80
Query: 725 --ILTIPNVKVEDQGEYICRASNDRSALESSVTIS----IQAEPNFTIPLTDKHMDNQAD 778
L I + + C+ ++ +IS P K Q+
Sbjct: 81 VSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQ 140
Query: 779 LTWTCEA--FGVPDVTYSWFRNGEL 801
++ TC F PD+ W NG+
Sbjct: 141 VSITCMVKGFYPPDIYTEWKMNGQP 165
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 33.1 bits (76), Expect = 0.095
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 19/81 (23%)
Query: 213 TLSCYAGGYPNPSY--EWFKED---------YVQDRLVANLIDPLSDKRFTLSGGNLIIN 261
T++C W+++ R V + K F+L IN
Sbjct: 19 TINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETV--NSGSKSFSLR-----IN 71
Query: 262 DPRQVEDRGSYHCKASNKFGS 282
D VED G+Y C G
Sbjct: 72 DL-TVEDGGTYRCGLGVAGGY 91
Score = 33.1 bits (76), Expect = 0.095
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 19/81 (23%)
Query: 486 TLSCYAGGYPNPSY--EWFKED---------YVQDRLVANLIDPLSDKRFTLSGGNLIIN 534
T++C W+++ R V + K F+L IN
Sbjct: 19 TINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETV--NSGSKSFSLR-----IN 71
Query: 535 DPRQVEDRGSYHCKASNKFGS 555
D VED G+Y C G
Sbjct: 72 DL-TVEDGGTYRCGLGVAGGY 91
Score = 31.6 bits (72), Expect = 0.27
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 14/77 (18%)
Query: 686 AGDKVRLECVAFGYPVPSYN--WTRRGSPLPRNA-------YFENFNRI-----LTIPNV 731
G+ + + CV + W R+ S Y E N L I ++
Sbjct: 14 TGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDL 73
Query: 732 KVEDQGEYICRASNDRS 748
VED G Y C
Sbjct: 74 TVEDGGTYRCGLGVAGG 90
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 33.1 bits (76), Expect = 0.098
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 19/81 (23%)
Query: 213 TLSCYAGGYPNPSYE--WFKE---------DYVQDRLVANLIDPLSDKRFTLSGGNLIIN 261
T++C W+++ R V + K F+L IN
Sbjct: 19 TINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNR--GSKSFSLR-----IN 71
Query: 262 DPRQVEDRGSYHCKASNKFGS 282
D V+D G+Y CK +++GS
Sbjct: 72 DL-TVKDSGTYRCKPESRYGS 91
Score = 33.1 bits (76), Expect = 0.098
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 19/81 (23%)
Query: 486 TLSCYAGGYPNPSYE--WFKE---------DYVQDRLVANLIDPLSDKRFTLSGGNLIIN 534
T++C W+++ R V + K F+L IN
Sbjct: 19 TINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNR--GSKSFSLR-----IN 71
Query: 535 DPRQVEDRGSYHCKASNKFGS 555
D V+D G+Y CK +++GS
Sbjct: 72 DL-TVKDSGTYRCKPESRYGS 91
Score = 30.0 bits (68), Expect = 1.3
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 685 KAGDKVRLECVAFGYPVPSYN--WTRR--GSPLPRNA-----YFENFNRI-----LTIPN 730
+ G+ + + CV W R+ GS + Y E NR L I +
Sbjct: 13 ETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFSLRIND 72
Query: 731 VKVEDQGEYICRASNDRSA 749
+ V+D G Y C+ + +
Sbjct: 73 LTVKDSGTYRCKPESRYGS 91
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 33.0 bits (75), Expect = 0.10
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 22/80 (27%)
Query: 687 GDKVRLEC----VAFGYPVPSYNWTR------------------RGSPLPRNAYFENFNR 724
G L C + S W R R +PL + + +
Sbjct: 22 GSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQA 81
Query: 725 ILTIPNVKVEDQGEYICRAS 744
L I +V+ D Y+CR
Sbjct: 82 ELHIRDVRGHDASIYVCRVE 101
Score = 31.1 bits (70), Expect = 0.42
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 13/78 (16%)
Query: 212 ITLSCY----AGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--------NLI 259
L C G S WF+++ V + V N + L+ L
Sbjct: 25 AFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELH 84
Query: 260 INDPRQVEDRGSYHCKAS 277
I D + D Y C+
Sbjct: 85 IRDV-RGHDASIYVCRVE 101
Score = 31.1 bits (70), Expect = 0.42
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 13/78 (16%)
Query: 485 ITLSCY----AGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGG--------NLI 532
L C G S WF+++ V + V N + L+ L
Sbjct: 25 AFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELH 84
Query: 533 INDPRQVEDRGSYHCKAS 550
I D + D Y C+
Sbjct: 85 IRDV-RGHDASIYVCRVE 101
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 32.6 bits (74), Expect = 0.13
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 21/93 (22%)
Query: 685 KAGDKVRLEC-VAFGYPVPSYNWTRRGSPLPRNAYFENFNR--------------ILTIP 729
G+ ++ W G L N L +
Sbjct: 21 YDGEDAVFSLDLSTIIQG---TWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILH 77
Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
VK +D G + + ++ S ++IQ
Sbjct: 78 AVKHQDSGALVGFSCPG---VQDSAALTIQESS 107
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 34.8 bits (79), Expect = 0.13
Identities = 21/183 (11%), Positives = 48/183 (26%), Gaps = 19/183 (10%)
Query: 591 DPPTNYP-GVNYYWARDYFPN------FVEEDKRVFVSYDGALYFSALEQI--DAGNYSC 641
D + +P N W + + D ++S + + +
Sbjct: 108 DRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFV 167
Query: 642 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP--KAGDKVRLECVAFGY 699
++ + + +G P + P++ K FP+ G + CV+
Sbjct: 168 EIRCYIDNLHFSGLEEWSDWSPVKQISWI--PDSQTKVFPQDKVILVGSDITFCCVSQEK 225
Query: 700 PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
+ + + + + N + I N+ V I
Sbjct: 226 VLSALIGHTNCPLI----HLDGENVAIKIRNISVSAS--SGTNVVFTTEDNIFGTVIFAG 279
Query: 760 AEP 762
P
Sbjct: 280 YPP 282
Score = 32.5 bits (73), Expect = 0.62
Identities = 18/158 (11%), Positives = 46/158 (29%), Gaps = 17/158 (10%)
Query: 318 DPPTNYP-GVNYYWARDYFPN------FVEEDKRVFVSYDGALYFSALEQI--DAGNYSC 368
D + +P N W + + D ++S + + +
Sbjct: 108 DRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFV 167
Query: 369 NVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAP--KAGDKVRLECVAFGY 426
++ + + +G P + P++ K FP+ G + CV+
Sbjct: 168 EIRCYIDNLHFSGLEEWSDWSPVKQISWI--PDSQTKVFPQDKVILVGSDITFCCVSQEK 225
Query: 427 PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPY 464
+ + + + + N + I N+ +
Sbjct: 226 VLSALIGHTNCPLI----HLDGENVAIKIRNISVSASS 259
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 31.9 bits (72), Expect = 0.23
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 726 LTIPNVKVEDQGEYICR--ASNDRSALESSVTISIQAEP 762
LTI N V D G Y C ++ + + + P
Sbjct: 76 LTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 33.8 bits (77), Expect = 0.26
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 20/110 (18%)
Query: 700 PVPSYNWTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTISIQ 759
P W LP N L +P V ++D+G + C+A N S
Sbjct: 416 PQGGGPWDSVARVLP--------NGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRV-- 465
Query: 760 AEPNFTIPLTDKHMDNQADLTW-------TCEAFG-VPDVTYSWFRNGEL 801
+ IP + +D+ ++LT TC + G P T SW +G+
Sbjct: 466 --RVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKP 513
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 31.7 bits (72), Expect = 0.27
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 726 LTIPNVKVEDQGEYICRASNDRS 748
L I NV+ ED+G Y R +
Sbjct: 75 LHISNVRKEDKGTYYMRVLRETE 97
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 32.9 bits (75), Expect = 0.27
Identities = 31/148 (20%), Positives = 47/148 (31%), Gaps = 27/148 (18%)
Query: 676 FPKTFPEAPKAGDKVRLECVAFGYPVPSYN----WTRRGSPL------PRNAYFENFNRI 725
FP + + CV W G + PR + + R+
Sbjct: 7 FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV 66
Query: 726 ---LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTI--------PLTDKHMD 774
LT+ + + EY C+ SN AL + + +I P D+
Sbjct: 67 VSVLTVLHQDWLNGKEYKCKVSN--KALPAPIEKTISKAKGQPREPQVYTLPPSRDELTK 124
Query: 775 NQADLTWTCEA--FGVPDVTYSWFRNGE 800
NQ L TC F D+ W NG+
Sbjct: 125 NQVSL--TCLVKGFYPSDIAVEWESNGQ 150
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 33.0 bits (75), Expect = 0.28
Identities = 40/185 (21%), Positives = 56/185 (30%), Gaps = 35/185 (18%)
Query: 637 GNYSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECV- 695
G SC+ VF FP + + CV
Sbjct: 1 GTKSCDKTHTCPPCPAPELLGGPSVFL------------FPPKPKDTLMISRTPEVTCVV 48
Query: 696 ---AFGYPVPSYNWTRRGSPL------PRNAYFENFNRI---LTIPNVKVEDQGEYICRA 743
+ P +NW G + PR + + R+ LT+ + + EY C+
Sbjct: 49 VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKV 108
Query: 744 SNDRSALESSVTISIQ----AEPNFTI--PLTDKHMDNQADLTWTCEA--FGVPDVTYSW 795
SN TIS EP P D+ NQ L TC F D+ W
Sbjct: 109 SNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSL--TCLVKGFYPSDIAVEW 166
Query: 796 FRNGE 800
NG+
Sbjct: 167 ESNGQ 171
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 33.1 bits (75), Expect = 0.39
Identities = 19/193 (9%), Positives = 40/193 (20%), Gaps = 42/193 (21%)
Query: 404 PKTFPEAP--KAGDKVRLECV-------AFGYPVPSYNWTRRGSPLPRNAYFE--NFNRI 452
PE+P + CV F W +P+ Y
Sbjct: 6 GYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASS 65
Query: 453 LTIPNV-KMRGPYFIKQ-------------------PTDVVFDLSKRSILND-ITLSCYA 491
+T ++ + P + +LS +
Sbjct: 66 VTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDG 125
Query: 492 G--GYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKA 549
G + ++ E + ++ +A
Sbjct: 126 GRETHLETNFTLKSEWATHKFADCKAKRDTPT--------SCTVDYSTVYFVNIEVWVEA 177
Query: 550 SNKFGSIISESVQ 562
N G + S+ +
Sbjct: 178 ENALGKVTSDHIN 190
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 31.4 bits (71), Expect = 0.40
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 221 YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 280
+ + ++F+ + + R+ R G L I+ ++ ED +Y + K
Sbjct: 50 WDSRKSKYFESKF-KGRV-----------RLDPQSGALYISKVQK-EDNSTYIMRVLKKT 96
Query: 281 GSIISESVQL 290
G+ ++L
Sbjct: 97 GNEQEWKIKL 106
Score = 31.4 bits (71), Expect = 0.40
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 494 YPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDRGSYHCKASNKF 553
+ + ++F+ + + R+ R G L I+ ++ ED +Y + K
Sbjct: 50 WDSRKSKYFESKF-KGRV-----------RLDPQSGALYISKVQK-EDNSTYIMRVLKKT 96
Query: 554 GSIISESVQL 563
G+ ++L
Sbjct: 97 GNEQEWKIKL 106
Score = 30.7 bits (69), Expect = 0.67
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 726 LTIPNVKVEDQGEYICRASNDRS 748
L I V+ ED YI R
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTG 97
Score = 27.6 bits (61), Expect = 7.7
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 341 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 377
+ + GALY S +++ D Y V K +
Sbjct: 63 KGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNE 99
Score = 27.6 bits (61), Expect = 7.7
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 614 EDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDT 650
+ + GALY S +++ D Y V K +
Sbjct: 63 KGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNE 99
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 31.1 bits (70), Expect = 0.46
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
LTI N D G Y CR + + ++
Sbjct: 75 LTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRR 111
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 30.7 bits (69), Expect = 0.60
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 28/83 (33%)
Query: 687 GDKVRLECVAFGYPVPSYN----WTRRGSPLP-----------RNAYFENFNRI------ 725
G L C + P W + P RN ++ +R
Sbjct: 9 GKNAYLPCS-YTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL 67
Query: 726 ------LTIPNVKVEDQGEYICR 742
L I NV ++D G Y CR
Sbjct: 68 NKGDVSLIIKNVTLDDHGTYCCR 90
Score = 27.2 bits (60), Expect = 9.6
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 211 DITLSC-YAGGYPNPSY--EWFKEDYVQDRLVANLI-------DPLSDKRFTLSG----G 256
+ L C Y W K + L+ R+ L G G
Sbjct: 11 NAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKG 70
Query: 257 N--LIINDPRQVEDRGSYHCK 275
+ LII + ++D G+Y C+
Sbjct: 71 DVSLIIKNV-TLDDHGTYCCR 90
Score = 27.2 bits (60), Expect = 9.6
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 17/81 (20%)
Query: 484 DITLSC-YAGGYPNPSY--EWFKEDYVQDRLVANLI-------DPLSDKRFTLSG----G 529
+ L C Y W K + L+ R+ L G G
Sbjct: 11 NAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKG 70
Query: 530 N--LIINDPRQVEDRGSYHCK 548
+ LII + ++D G+Y C+
Sbjct: 71 DVSLIIKNV-TLDDHGTYCCR 90
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 32.2 bits (73), Expect = 0.69
Identities = 30/172 (17%), Positives = 48/172 (27%), Gaps = 37/172 (21%)
Query: 597 PGVNYYWARDYFPNFV----EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 652
GV + W + V E D S L A ++C
Sbjct: 278 SGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP----ES 333
Query: 653 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGD-----KVRLECVAFGYPVPSYN-- 705
P + F+ P+ P + + V L C+A G+
Sbjct: 334 KTPLTATLSKSGNTFR--------PEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVR 385
Query: 706 WTRRGSPLPRNAYFENFNRILTIPNVKVEDQGEYICRASNDRSALESSVTIS 757
W + LPR Y LT + + QG A+ S + ++
Sbjct: 386 WLQGSQELPREKY-------LTWASRQEPSQG-------TTTFAVTSILRVA 423
Score = 31.1 bits (70), Expect = 1.7
Identities = 24/133 (18%), Positives = 36/133 (27%), Gaps = 23/133 (17%)
Query: 324 PGVNYYWARDYFPNFV----EEDKRVFVSYDGALYFSALEQIDAGNYSCNVQSKVSDTGR 379
GV + W + V E D S L A ++C
Sbjct: 278 SGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP----ES 333
Query: 380 NGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGD-----KVRLECVAFGYPVPSYN-- 432
P + F+ P+ P + + V L C+A G+
Sbjct: 334 KTPLTATLSKSGNTFR--------PEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVR 385
Query: 433 WTRRGSPLPRNAY 445
W + LPR Y
Sbjct: 386 WLQGSQELPREKY 398
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 30.6 bits (69), Expect = 0.70
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 16/78 (20%)
Query: 212 ITLSCYAGGYPNPSYE--WFK-------EDYVQDRLVANLIDPLSDKRFTLSGGN----- 257
+ + C S + W + + P+ R L +
Sbjct: 22 LDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLL 81
Query: 258 -LIINDPRQVEDRGSYHC 274
+ + + + VED G Y C
Sbjct: 82 RVRMVNLQ-VEDSGLYQC 98
Score = 30.6 bits (69), Expect = 0.70
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 16/78 (20%)
Query: 485 ITLSCYAGGYPNPSYE--WFK-------EDYVQDRLVANLIDPLSDKRFTLSGGN----- 530
+ + C S + W + + P+ R L +
Sbjct: 22 LDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLL 81
Query: 531 -LIINDPRQVEDRGSYHC 547
+ + + + VED G Y C
Sbjct: 82 RVRMVNLQ-VEDSGLYQC 98
Score = 28.3 bits (63), Expect = 5.4
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 28/106 (26%)
Query: 685 KAGDKVRLECVAFGYPVPSYN--W--------------TRRGSPLPRNAYF-------EN 721
K G + ++C S W T R S +
Sbjct: 17 KEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYH 76
Query: 722 FNRI--LTIPNVKVEDQGEYIC---RASNDRSALESSVTISIQAEP 762
+ + + + N++VED G Y C + + L + + + E
Sbjct: 77 DHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTLEH 122
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 30.0 bits (68), Expect = 0.75
Identities = 14/68 (20%), Positives = 18/68 (26%), Gaps = 2/68 (2%)
Query: 686 AGDKVRLECVAFGYPVPSYNWTRRGSP-LPRNAYFENFNRILTIPNVKVEDQGEYICRAS 744
GD V L C G+ + E + +ED G Y CR
Sbjct: 18 LGDTVTLRCHL-PRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQ 76
Query: 745 NDRSALES 752
S
Sbjct: 77 VSEPLWTS 84
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 31.8 bits (72), Expect = 0.85
Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 41/156 (26%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRR--GSPLPRNAYFENFNRI----------------- 725
K+G V++EC + + + W R+ L A ++
Sbjct: 37 KSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS 96
Query: 726 -----LTIPNVKVEDQGEYICRASNDRSA-------------LESSVTISIQAEPNFTI- 766
LT+ + ED YIC ++ D ++ L + + P +
Sbjct: 97 LTLSTLTVTSAHPEDSSFYIC-SARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVF 155
Query: 767 PLTDKHMDNQADLTWTCEA--FGVPDVTYSWFRNGE 800
++ + + T C A F V SW+ NG+
Sbjct: 156 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGK 191
Score = 29.1 bits (65), Expect = 5.9
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 15/79 (18%)
Query: 213 TLSCYAGGYPNPSYEWFKED---------YVQDRLVANLIDPLSDKRFTLSGGN-----L 258
+ C + + + W+++ + A + +F ++ + L
Sbjct: 43 KIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL 102
Query: 259 IINDPRQVEDRGSYHCKAS 277
+ ED Y C A
Sbjct: 103 TVTSA-HPEDSSFYICSAR 120
Score = 29.1 bits (65), Expect = 5.9
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 15/79 (18%)
Query: 486 TLSCYAGGYPNPSYEWFKED---------YVQDRLVANLIDPLSDKRFTLSGGN-----L 531
+ C + + + W+++ + A + +F ++ + L
Sbjct: 43 KIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL 102
Query: 532 IINDPRQVEDRGSYHCKAS 550
+ ED Y C A
Sbjct: 103 TVTSA-HPEDSSFYICSAR 120
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 30.3 bits (68), Expect = 0.93
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPNFTIPLT 769
+T+ ++ D Y C + L +V ++I P +
Sbjct: 77 VTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEETS 120
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 30.2 bits (68), Expect = 1.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 726 LTIPNVKVEDQGEYICRASNDRS 748
L + ++K ED G Y R S
Sbjct: 81 LLLKDLKPEDSGTYNFRFEISDS 103
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 31.1 bits (70), Expect = 1.2
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 25/147 (17%)
Query: 676 FPKTFPEAPKAGDKVRLECVAFGYPVPSYN----WTRRGSPLPR---NAYFENFNR---- 724
FP + ++ CV + W + + E++N
Sbjct: 15 FPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRV 74
Query: 725 --ILTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEPN-------FTIPLTDKHMDN 775
L I + E+ C+ +N L S + +I + +P + +
Sbjct: 75 VSTLPIQHQDWMSGKEFKCKVNN--KDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSR 132
Query: 776 QADLTWTCEA--FGVPDVTYSWFRNGE 800
+ D++ TC F D++ W NG
Sbjct: 133 K-DVSLTCLVVGFNPGDISVEWTSNGH 158
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 29.9 bits (67), Expect = 1.2
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 679 TFPEAPKAGDKVRLECVAFGYPVPSYNWTRRGSPLPRNAYFENF-NRI--------LTIP 729
TFP + +V++ V + N+ RI L I
Sbjct: 18 TFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVIS 77
Query: 730 NVKVEDQGEYICRASNDRSALESSVTISIQ 759
++++ED G+Y + ++ ++Q
Sbjct: 78 DLRMEDAGDYKADINTQADPYTTTKRYNLQ 107
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 30.2 bits (67), Expect = 1.2
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTI 756
L + +V +D G Y C+ + E +
Sbjct: 94 LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 124
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 31.1 bits (70), Expect = 1.3
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 719 FENFNRILTIPNVKVEDQGEYICRASNDR---------SALESSVTISIQAEPNFTI-PL 768
F++++ + + +++ED Y C +S + L + P ++
Sbjct: 70 FDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEP 129
Query: 769 TDKHMDNQADLTWTCEA--FGVPDVTYSWFRNGE 800
+ + N+ T C A F V SW+ NG+
Sbjct: 130 SKAEIANKQKATLVCLARGFFPDHVELSWWVNGK 163
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 28.9 bits (64), Expect = 1.3
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 17/70 (24%)
Query: 210 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 269
+ L+C + + +W K L K +L++ D +VED
Sbjct: 15 TSVELTCPL--DSDENLKWEKNG-----------QELPQK----HDKHLVLQDFSEVEDS 57
Query: 270 GSYHCKASNK 279
G Y C
Sbjct: 58 GYYVCYTPAS 67
Score = 28.9 bits (64), Expect = 1.3
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 17/70 (24%)
Query: 483 NDITLSCYAGGYPNPSYEWFKEDYVQDRLVANLIDPLSDKRFTLSGGNLIINDPRQVEDR 542
+ L+C + + +W K L K +L++ D +VED
Sbjct: 15 TSVELTCPL--DSDENLKWEKNG-----------QELPQK----HDKHLVLQDFSEVEDS 57
Query: 543 GSYHCKASNK 552
G Y C
Sbjct: 58 GYYVCYTPAS 67
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 30.5 bits (69), Expect = 1.4
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 740 ICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFR 797
I + + S+ T + P T+ + ++ T C P + +W
Sbjct: 65 ILNNNLNTLIQRSNHTQATNDPPEVTVFPK-EPVELGQPNTLICHIDKFFPPVLNVTWLC 123
Query: 798 NGE 800
NGE
Sbjct: 124 NGE 126
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 29.4 bits (66), Expect = 1.5
Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 34/105 (32%)
Query: 687 GDKVRLECVAFGYPVPSYN--------WTRRGSP----------LPRNAYFENFNRI--- 725
+ L C + W + + + + + R
Sbjct: 9 NETADLPCQ---FANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFD 65
Query: 726 -----LTIPNVKVEDQGEYICRASNDRS-----ALESSVTISIQA 760
L + N++++D+G Y C + + + + +S+ A
Sbjct: 66 SDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVLA 110
Score = 28.3 bits (63), Expect = 3.6
Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 24/87 (27%)
Query: 211 DITLSCYAGGYPNPSYE--------WFKEDYV--------QDRLVANLIDPLSDKRFTLS 254
L C + N + W ++ + +++ + + R +
Sbjct: 11 TADLPCQ---FANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDS--VHSKYMGRTSFD 65
Query: 255 GGN--LIINDPRQVEDRGSYHCKASNK 279
+ L +++ Q++D+G Y C +K
Sbjct: 66 SDSWTLRLHNL-QIKDKGLYQCIIHHK 91
Score = 28.3 bits (63), Expect = 3.6
Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 24/87 (27%)
Query: 484 DITLSCYAGGYPNPSYE--------WFKEDYV--------QDRLVANLIDPLSDKRFTLS 527
L C + N + W ++ + +++ + + R +
Sbjct: 11 TADLPCQ---FANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDS--VHSKYMGRTSFD 65
Query: 528 GGN--LIINDPRQVEDRGSYHCKASNK 552
+ L +++ Q++D+G Y C +K
Sbjct: 66 SDSWTLRLHNL-QIKDKGLYQCIIHHK 91
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 29.5 bits (66), Expect = 1.9
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISI 758
L I ++++D+ Y C + + I
Sbjct: 80 LQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKI 112
Score = 28.8 bits (64), Expect = 3.4
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 211 DITLSCY---AGGYPNPSYEWFKE---DYVQDRLVANLIDPLSDKRF-------TLSGGN 257
D+ + C GY +W D V L + D + ++ G+
Sbjct: 18 DVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGD 77
Query: 258 --LIINDPRQVEDRGSYHCKASNK 279
L IN + ++DR Y C+ + +
Sbjct: 78 VSLQINTLQ-MDDRNHYTCEVTWQ 100
Score = 28.8 bits (64), Expect = 3.4
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 484 DITLSCY---AGGYPNPSYEWFKE---DYVQDRLVANLIDPLSDKRF-------TLSGGN 530
D+ + C GY +W D V L + D + ++ G+
Sbjct: 18 DVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPGD 77
Query: 531 --LIINDPRQVEDRGSYHCKASNK 552
L IN + ++DR Y C+ + +
Sbjct: 78 VSLQINTLQ-MDDRNHYTCEVTWQ 100
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 30.6 bits (70), Expect = 2.0
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 13/72 (18%)
Query: 366 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 425
Y+C K S + F + + K G ++L C A G
Sbjct: 196 YTCEATHKTSTSPIVKSFNR--NECEVMLVE---------SGGGLVKPGGSLKLSCTASG 244
Query: 426 YPVPSY--NWTR 435
+ +W R
Sbjct: 245 FIFNRCAMSWVR 256
Score = 30.6 bits (70), Expect = 2.0
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 13/72 (18%)
Query: 639 YSCNVQSKVSDTGRNGPFFPLKVFPHSNFQQLKFPNNFPKTFPEAPKAGDKVRLECVAFG 698
Y+C K S + F + + K G ++L C A G
Sbjct: 196 YTCEATHKTSTSPIVKSFNR--NECEVMLVE---------SGGGLVKPGGSLKLSCTASG 244
Query: 699 YPVPSY--NWTR 708
+ +W R
Sbjct: 245 FIFNRCAMSWVR 256
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune
response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 28.9 bits (65), Expect = 3.0
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 750 LESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFRNGEL--GHQM 805
L S +IQ P + +N C G D+ +NGE +
Sbjct: 13 LSLSGLEAIQRTPKIQVYSR-HPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEH 71
Query: 806 TDLL 809
+DL
Sbjct: 72 SDLS 75
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 3.4
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 707 TRRGSPLPRNAYFENFNRILTIPNVK------VED--QGEYICR 742
TR N N +LT P K VE +G+ +C
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCA 46
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B*
1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B
1duz_B* ...
Length = 100
Score = 28.1 bits (63), Expect = 3.5
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 758 IQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFRNGEL--GHQMTDLL 809
IQ P + + +N C G D+ +NGE + +DL
Sbjct: 2 IQRTPKIQV-YSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLS 56
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 29.4 bits (66), Expect = 3.7
Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 37/153 (24%)
Query: 685 KAGDKVRLECVAFGYPVPSYNWTRR--GSPLPRNAYFENFNRI----------------- 725
K+G V++EC + + + W R+ L A ++
Sbjct: 14 KSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS 73
Query: 726 -----LTIPNVKVEDQGEYICRASNDRSALE--------SSVTISIQ--AEPNFTI-PLT 769
LT+ + ED YIC A E +V ++ P + +
Sbjct: 74 LTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPS 133
Query: 770 DKHMDNQADLTWTCEA--FGVPDVTYSWFRNGE 800
+ + + T C A F V SW+ NG+
Sbjct: 134 EAEISHTQKATLVCLATGFYPDHVELSWWVNGK 166
Score = 28.7 bits (64), Expect = 7.5
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 15/79 (18%)
Query: 213 TLSCYAGGYPNPSYEWFKED---------YVQDRLVANLIDPLSDKRFTLSGGN-----L 258
+ C + + + W+++ + A + +F ++ + L
Sbjct: 20 KIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL 79
Query: 259 IINDPRQVEDRGSYHCKAS 277
+ ED Y C A
Sbjct: 80 TVTSA-HPEDSSFYICSAR 97
Score = 28.7 bits (64), Expect = 7.5
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 15/79 (18%)
Query: 486 TLSCYAGGYPNPSYEWFKED---------YVQDRLVANLIDPLSDKRFTLSGGN-----L 531
+ C + + + W+++ + A + +F ++ + L
Sbjct: 20 KIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL 79
Query: 532 IINDPRQVEDRGSYHCKAS 550
+ ED Y C A
Sbjct: 80 TVTSA-HPEDSSFYICSAR 97
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 29.5 bits (66), Expect = 3.8
Identities = 24/152 (15%), Positives = 40/152 (26%), Gaps = 36/152 (23%)
Query: 685 KAGDKVRLECVAFGYPVPSYNW-------------------TRRGSPLPRNAYF--ENFN 723
G V L C+ P +W + LP Y +
Sbjct: 14 PRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTD 73
Query: 724 RILTIPNVKVEDQGEYICRASNDRSALES--------SVTISIQ----AEPNFTI-PLTD 770
L + + C +S D +T+ P + ++
Sbjct: 74 TELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSE 133
Query: 771 KHMDNQADLTWTCEA--FGVPDVTYSWFRNGE 800
+ + T C A F V SW+ NG+
Sbjct: 134 AEISHTQKATLVCLATGFYPDHVELSWWVNGK 165
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 28.3 bits (63), Expect = 4.0
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 18/96 (18%)
Query: 212 ITLSCYAGGYPNPSYE--WFK-------EDYVQDRLVANLIDPLSDKRFTLSGGN----- 257
+ + C S + W + + P+ R L +
Sbjct: 17 LDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLL 76
Query: 258 -LIINDPRQVEDRGSYHC--KASNKFGSIISESVQL 290
+ + + + VED G Y C K ++ + ++L
Sbjct: 77 RVRMVNLQ-VEDSGLYQCVIYQPPKEPHMLFDRIRL 111
Score = 28.3 bits (63), Expect = 4.0
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 18/96 (18%)
Query: 485 ITLSCYAGGYPNPSYE--WFK-------EDYVQDRLVANLIDPLSDKRFTLSGGN----- 530
+ + C S + W + + P+ R L +
Sbjct: 17 LDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLL 76
Query: 531 -LIINDPRQVEDRGSYHC--KASNKFGSIISESVQL 563
+ + + + VED G Y C K ++ + ++L
Sbjct: 77 RVRMVNLQ-VEDSGLYQCVIYQPPKEPHMLFDRIRL 111
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 28.1 bits (63), Expect = 4.4
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 677 PKTFPEAPKAGDKVRLECVAFGYPVPSY--NWTRR--GSPLPRNA-----YFENFNR--- 724
P+T + G+ + ++CV + W R GS + Y E ++
Sbjct: 7 PRTITKET--GESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSK 64
Query: 725 --ILTIPNVKVEDQGEYICRASNDRS 748
L I +++VED G Y C+A S
Sbjct: 65 SFSLRISDLRVEDSGTYKCQADYSPS 90
Score = 27.7 bits (62), Expect = 7.0
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 250 RFTLS---GGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQ-LAFG 293
R+ + G L I+D +VED G+Y C+A S++ G
Sbjct: 54 RYDETVDKGSKSFSLRISDL-RVEDSGTYKCQADYSPSCYSYPSLESAVEG 103
Score = 27.7 bits (62), Expect = 7.0
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 523 RFTLS---GGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQ-LAFG 566
R+ + G L I+D +VED G+Y C+A S++ G
Sbjct: 54 RYDETVDKGSKSFSLRISDL-RVEDSGTYKCQADYSPSCYSYPSLESAVEG 103
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 29.2 bits (66), Expect = 4.6
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 22/84 (26%)
Query: 677 PKTFPEAPKAGDKVRLECVAFGYPVPSYNWTRR--GSPLPRNAYFENFNRI--------- 725
P T +P G++ L C A + W ++ G Y + R
Sbjct: 142 PATLSLSP--GERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDAS-TRATGIPDRFSG 198
Query: 726 --------LTIPNVKVEDQGEYIC 741
LTI ++ ED Y C
Sbjct: 199 SGSGTDFTLTISRLEPEDFAVYYC 222
>1v0w_A Phospholipase D; hydrolase, substrate SOAK,
dibutyrylphosphatidylcholine, DIC4PC; 1.35A
{Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A
1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A*
2ze9_A*
Length = 506
Score = 29.7 bits (66), Expect = 4.7
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 792 TYSWFRNGELGHQMTDLLLKAV 813
T + F NG + L ++
Sbjct: 86 TLAPFPNGAFQDAIVAGLKESA 107
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 28.1 bits (63), Expect = 5.0
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESSVTISIQAEP 762
+T+ ++++ D G Y C + VT++I P
Sbjct: 76 VTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVP 112
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide;
HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP:
a.93.1.2 PDB: 1cxp_C* 1d5l_C* 1d7w_C* 1dnu_C* 1dnw_C*
1mhl_C* 1myp_C* 4dl1_C* 3zs0_C* 3f9p_C* 3zs1_C*
Length = 466
Score = 29.0 bits (64), Expect = 6.3
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 428 VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDV 472
+P YN RR LP+ +L + + P ++
Sbjct: 318 LPGYNAWRRFCGLPQPETVGQLGTVLRNLKLARKLMEQYGTPNNI 362
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 28.8 bits (64), Expect = 6.3
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 14/89 (15%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSA-----------LESSVTISIQAEPNFTI-PLTDKHM 773
L + Y C + R + L + P ++ + +
Sbjct: 74 LILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEI 133
Query: 774 DNQADLTWTCEAFGV-PD-VTYSWFRNGE 800
N+ T C A G PD V SW+ NG+
Sbjct: 134 ANKQKATLVCLARGFFPDHVELSWWVNGK 162
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 28.7 bits (64), Expect = 6.6
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 15/90 (16%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSALESS--------VTISIQ----AEPNFTI-PLTDKH 772
L+ + + D G Y+C S A + +T+ P + ++
Sbjct: 76 LSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAE 135
Query: 773 MDNQADLTWTCEA--FGVPDVTYSWFRNGE 800
+ + T C A F V SW+ NG+
Sbjct: 136 ISHTQKATLVCLATGFFPDHVELSWWVNGK 165
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 27.8 bits (62), Expect = 6.9
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 24/91 (26%)
Query: 240 ANLIDPLSDKRFTLSGG------NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 293
L P+ D RF + ++ I D + D G Y C A + + ++
Sbjct: 61 NGLSQPVQDARFQIIQLPNRHDFHMNILDT-RRNDSGIYLCGAIS-----LHPKAKIEES 114
Query: 294 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP 324
E + + T YP
Sbjct: 115 PGAELVVTERIL------------ETSTRYP 133
Score = 27.8 bits (62), Expect = 6.9
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 24/91 (26%)
Query: 513 ANLIDPLSDKRFTLSGG------NLIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 566
L P+ D RF + ++ I D + D G Y C A + + ++
Sbjct: 61 NGLSQPVQDARFQIIQLPNRHDFHMNILDT-RRNDSGIYLCGAIS-----LHPKAKIEES 114
Query: 567 FIGEFNLKRAPEIGNQNWGKAMFCDPPTNYP 597
E + + T YP
Sbjct: 115 PGAELVVTERIL------------ETSTRYP 133
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 27.3 bits (61), Expect = 7.2
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 250 RFT---LSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 293
R++ G N L I D +VED G+Y CKA + V G
Sbjct: 54 RYSETVDEGSNSASLTIRDL-RVEDSGTYKCKAYR--RCAFNTGVGYKEG 100
Score = 27.3 bits (61), Expect = 7.2
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 523 RFT---LSGGN---LIINDPRQVEDRGSYHCKASNKFGSIISESVQLAFG 566
R++ G N L I D +VED G+Y CKA + V G
Sbjct: 54 RYSETVDEGSNSASLTIRDL-RVEDSGTYKCKAYR--RCAFNTGVGYKEG 100
>3k7b_A Protein A33; C-type lectin-like domain, homodimer, poxvirus, EEV,
EV, VIR protein; 2.10A {Vaccinia virus WR}
Length = 96
Score = 27.1 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 36 YRDSCYRFVKSPLKTRNDAKLNCKSLDSDLANVNDADEHGFIMY 79
Y+ SCY + +DA NC + S L N +D I Y
Sbjct: 16 YQGSCYILHSDY-QMFSDAAANCTAESSTLPNKSDVMITWLIDY 58
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 28.9 bits (65), Expect = 7.4
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 9/35 (25%)
Query: 401 NNFPKTFPEAPKAG---------DKVRLECVAFGY 426
NN T P+ + +R + A G+
Sbjct: 375 NNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGF 409
Score = 28.9 bits (65), Expect = 7.4
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 9/35 (25%)
Query: 674 NNFPKTFPEAPKAG---------DKVRLECVAFGY 699
NN T P+ + +R + A G+
Sbjct: 375 NNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGF 409
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 28.1 bits (63), Expect = 8.0
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 740 ICRASNDRSALESSVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFR 797
+ +A+ + S+ T P T+ + + C P V +W R
Sbjct: 65 VDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPN-VLICFIDKFTPPVVNVTWLR 123
Query: 798 NGE 800
NG+
Sbjct: 124 NGK 126
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 28.4 bits (63), Expect = 8.3
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 13/87 (14%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSA----------LESSVTISIQAEPNFTI-PLTDKHMD 774
L I +ED Y C +S + L + P + ++ +
Sbjct: 78 LKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEIS 137
Query: 775 NQADLTWTCEA--FGVPDVTYSWFRNG 799
+ T C A F V SW+ NG
Sbjct: 138 HTQKATLVCLATGFYPDHVELSWWVNG 164
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR,
MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP:
d.58.28.1 PDB: 2gt3_A 2iem_A
Length = 211
Score = 28.4 bits (64), Expect = 8.4
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 213 TLSCYAGGY-PNPSYE 227
T + Y GGY PNP+Y
Sbjct: 68 TAAGYTGGYTPNPTYR 83
Score = 28.4 bits (64), Expect = 8.4
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 486 TLSCYAGGY-PNPSYE 500
T + Y GGY PNP+Y
Sbjct: 68 TAAGYTGGYTPNPTYR 83
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 28.7 bits (64), Expect = 8.6
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 408 PEAPKAGDKVRLECVAFGYPVPSY--NWTR 435
E K G V++ C A GY + +W +
Sbjct: 9 AEVVKPGASVKISCKASGYTFTDHAIHWVK 38
Score = 28.7 bits (64), Expect = 8.6
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 681 PEAPKAGDKVRLECVAFGYPVPSY--NWTR 708
E K G V++ C A GY + +W +
Sbjct: 9 AEVVKPGASVKISCKASGYTFTDHAIHWVK 38
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos
taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Length = 199
Score = 28.0 bits (63), Expect = 8.7
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 213 TLSCYAGGY-PNPSYE 227
T +AGGY PNP+Y+
Sbjct: 69 TQVGFAGGYTPNPTYK 84
Score = 28.0 bits (63), Expect = 8.7
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 486 TLSCYAGGY-PNPSYE 500
T +AGGY PNP+Y+
Sbjct: 69 TQVGFAGGYTPNPTYK 84
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 28.5 bits (63), Expect = 8.9
Identities = 27/153 (17%), Positives = 42/153 (27%), Gaps = 41/153 (26%)
Query: 685 KAGDKVRLECVAFGYPVPSYNW----------------------TRRGSPLPRNAYF--- 719
+ G V L C P+ + S LP + +F
Sbjct: 39 EKGKYVELRC----DPISGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVR 94
Query: 720 -ENFNRILTIPNVKVEDQGEYICRASNDRSA--------LESSVTISIQAEPNFTI-PLT 769
E L I + D Y+C S L + P + +
Sbjct: 95 PEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPS 154
Query: 770 DKHMDNQADLTWTCEA--FGVPDVTYSWFRNGE 800
+ + + T C A F V SW+ NG+
Sbjct: 155 EAEISHTQKATLVCLATGFYPDHVELSWWVNGK 187
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase;
1.7A {Populus trichocarpa}
Length = 261
Score = 28.5 bits (64), Expect = 9.0
Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 213 TLSCYAGGY-PNPSYE 227
T Y G NP+YE
Sbjct: 120 TEVGYTQGLLHNPTYE 135
Score = 28.5 bits (64), Expect = 9.0
Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 486 TLSCYAGGY-PNPSYE 500
T Y G NP+YE
Sbjct: 120 TEVGYTQGLLHNPTYE 135
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 27.4 bits (61), Expect = 9.0
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 753 SVTISIQAEPNFTIPLTDKHMDNQADLTWTCEAFGV--PDVTYSWFRNGEL--GHQMTDL 808
+ +IQ P + +N C P + +NG+ +M+D+
Sbjct: 16 TGLYAIQKTPQIQVYSR-HPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDM 74
Query: 809 L 809
Sbjct: 75 S 75
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 28.8 bits (63), Expect = 9.1
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 428 VPSYNWTRRGSPLPRNAYFENFNRILTIPNVKMRGPYFIKQPTDV 472
+P YN R L + + +L + + K P ++
Sbjct: 446 MPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNI 490
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 27.3 bits (61), Expect = 9.3
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 726 LTIPNVKVEDQGEYICRASNDRSA 749
LTI ++ ED G Y C +
Sbjct: 82 LTIQGIRFEDNGIYFC-QQKCNNT 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.440
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,893,726
Number of extensions: 787539
Number of successful extensions: 5215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3193
Number of HSP's successfully gapped: 1321
Length of query: 813
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 712
Effective length of database: 3,881,772
Effective search space: 2763821664
Effective search space used: 2763821664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.7 bits)