BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy149
(86 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VB62|DPOA2_DROME DNA polymerase alpha subunit B OS=Drosophila melanogaster
GN=DNApol-alpha73 PE=1 SV=2
Length = 609
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 6 RSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAET 65
R L V++GP+T S L Y+PL DL+ PDVL+L GP LD H ++ G LAET
Sbjct: 358 RELQFVVASGPFTDSTDLFYEPLHDLLKYLKDHRPDVLVLTGPFLDADHKMV--GELAET 415
Query: 66 FEDFYVKLIDSIVQPL 81
F+ F+ K+I I++ +
Sbjct: 416 FDTFFEKMIGGIMESI 431
>sp|P33611|DPOA2_MOUSE DNA polymerase alpha subunit B OS=Mus musculus GN=Pola2 PE=1 SV=2
Length = 600
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 12 VSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFYV 71
V+ GPYT SD+++Y PL DLIA+ + +PDV IL GP LD H + N L FED +
Sbjct: 344 VACGPYTTSDSITYDPLLDLIAIINRDQPDVCILFGPFLDAKHEQVENCKLTSPFEDVFK 403
Query: 72 KLIDSIVQPLEKPG 85
+ + ++++ G
Sbjct: 404 QCLRTVIEGTRSSG 417
>sp|Q14181|DPOA2_HUMAN DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2
Length = 598
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD+++Y PL DLIA+ PDV IL GP LD H + N L FED
Sbjct: 342 VLVACGPYTTSDSITYDPLLDLIAVINHDRPDVCILFGPFLDAKHEQVENCLLTSPFEDI 401
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + +I++ G
Sbjct: 402 FKQCLRTIIEGTRSSG 417
>sp|O89043|DPOA2_RAT DNA polymerase alpha subunit B OS=Rattus norvegicus GN=Pola2 PE=2
SV=2
Length = 600
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD+++Y PL DLI+ PDV IL GP LD H + N L FED
Sbjct: 342 VLVACGPYTTSDSITYDPLLDLISTINHDRPDVCILFGPFLDAKHEQVENCKLTSPFEDI 401
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + ++++ G
Sbjct: 402 FKQCLRTVIEGTRSSG 417
>sp|Q58D13|DPOA2_BOVIN DNA polymerase alpha subunit B OS=Bos taurus GN=POLA2 PE=2 SV=1
Length = 604
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 10 MFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDF 69
+ V+ GPYT SD++++ PL DLI + + PDV IL GP LD H + + L +FED
Sbjct: 344 VLVACGPYTTSDSITFDPLLDLITIINRDRPDVCILFGPFLDAKHEQVESCLLTSSFEDV 403
Query: 70 YVKLIDSIVQPLEKPG 85
+ + + +I++ G
Sbjct: 404 FKQCLRTIIEGTRSSG 419
>sp|O74946|DPOA2_SCHPO DNA polymerase alpha subunit B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pol12 PE=1 SV=1
Length = 574
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 8 LSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSL----A 63
+S+++++GP++ D LS+ PL+ +I+ + D++IL GP LD +H L+ G++ A
Sbjct: 304 ISIYIASGPWSLRDDLSFSPLKSMISYVNKNPVDLVILCGPFLDINHILIRTGNITGTSA 363
Query: 64 ETFEDFYVKLIDSIVQPLEKP 84
+ E+ + + + I+ L P
Sbjct: 364 TSLEELFKERVTPILSQLTCP 384
>sp|P38121|DPOA2_YEAST DNA polymerase alpha subunit B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=POL12 PE=1 SV=1
Length = 705
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Query: 2 TLTRRSLSMFVSAGPYTQSDTLSYKPLEDLI-ALTVQQEPDVLILIGPLLDTSHPLLLNG 60
L SL + V+ GPY +D S + L++ I ++ + +P VLI+ GP +D +HPL+ +G
Sbjct: 387 NLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASG 446
Query: 61 SL---------AETFEDFYVKLIDSIVQ 79
L +T ++ ++KL I++
Sbjct: 447 KLPNFPQFKTQPKTLDELFLKLFTPILK 474
>sp|Q21625|DPOA2_CAEEL DNA polymerase alpha subunit B OS=Caenorhabditis elegans GN=div-1
PE=3 SV=3
Length = 581
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 4 TRRSLSMFVSAGPYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTSHPLL----LN 59
T + ++ + GPYT +D Y+ L +L+ V ++PD+L+L GP +D + L N
Sbjct: 317 TDTTKEIWFACGPYTATDNCGYEHLCELLDKVVAEKPDILMLAGPFVDKKNTFLNKPTFN 376
Query: 60 GSLAETFEDFYVKLIDSIV 78
+ ED +K+ +++V
Sbjct: 377 ITYDNLLEDLLLKVKETLV 395
>sp|Q54S08|DPOA2_DICDI DNA polymerase alpha subunit B OS=Dictyostelium discoideum GN=polA2
PE=3 SV=2
Length = 623
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 8 LSMFVSAGPYT-QSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTS--HPLLLNGSLAE 64
+++ +++GP+ Q T Y PL+DL + ++P +L L+GP +D S H + + +E
Sbjct: 370 INVMIASGPFDLQKSTPDYTPLDDLCNVVSNKKPHILFLMGPFIDESNVHIKKYSETFSE 429
Query: 65 TFEDFYVKLIDSI 77
F + KL D+I
Sbjct: 430 LFNNLMKKLNDNI 442
>sp|C0R176|DAPA_BRAHW 4-hydroxy-tetrahydrodipicolinate synthase OS=Brachyspira
hyodysenteriae (strain ATCC 49526 / WA1) GN=dapA PE=3
SV=1
Length = 293
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 8 LSMFVSAG-----PYTQSDTLSYKPLEDLIALTVQQEPDVLILIGPLLDTS 53
+S+F AG P+T+ + ++Y+ LE+LI + + D +I G +++
Sbjct: 1 MSLFEGAGVALITPFTEDNQINYEKLEELIEFQIANKTDAIIAAGTTAESA 51
>sp|A1L3F5|CMIP_XENLA C-Maf-inducing protein OS=Xenopus laevis GN=cmip PE=2 SV=2
Length = 772
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 19 QSDTLSYKPLE-------DLIALTVQQEPDVLILIGPLLDTSHP 55
Q D++ PLE + I LT Q+ +++ I PLL+ +HP
Sbjct: 194 QDDSIHQAPLEIISKLLSENINLTTQEHESIIVAIAPLLENNHP 237
>sp|Q8UCC9|THIC_AGRT5 Phosphomethylpyrimidine synthase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=thiC PE=3 SV=2
Length = 607
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 1 MTLTRRSLSMFVSAGPYTQSDTLSYK---------PLEDLIALTVQQEPDVLIL--IGPL 49
M + +++ + V+ GP+ S + P+ ++ EP V + GP
Sbjct: 1 MNIVAKTIPLVVTTGPHAASTKIHKPGILHPHIRVPMREIAVHPTAGEPPVTVYDSSGPY 60
Query: 50 LDTSHPLLLNGSLAETFEDFYV 71
D SHP+L+ L D+ V
Sbjct: 61 TDPSHPVLIENGLPRLRHDWVV 82
>sp|Q8IY22|CMIP_HUMAN C-Maf-inducing protein OS=Homo sapiens GN=CMIP PE=1 SV=3
Length = 773
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 19 QSDTLSYKPLE-------DLIALTVQQEPDVLILIGPLLDTSHP 55
Q D+++ PLE + LT Q+ ++++ I PLL+ +HP
Sbjct: 195 QDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHP 238
>sp|Q9D486|CMIP_MOUSE C-Maf-inducing protein OS=Mus musculus GN=Cmip PE=2 SV=3
Length = 773
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 19 QSDTLSYKPLE-------DLIALTVQQEPDVLILIGPLLDTSHP 55
Q D+++ PLE + LT Q+ ++++ I PLL+ +HP
Sbjct: 195 QDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHP 238
>sp|P28288|ABCD3_HUMAN ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3
PE=1 SV=1
Length = 659
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 28 LEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFY 70
++ +IA + L++ P LD SHP L + +E ED+Y
Sbjct: 316 IDSIIAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYY 358
>sp|P55096|ABCD3_MOUSE ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3
PE=1 SV=2
Length = 659
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 28 LEDLIALTVQQEPDVLILIGPLLDTSHPLLLNGSLAETFEDFY 70
++ +IA V L++ P LD +HP L+ + +E ED+Y
Sbjct: 316 IDSIIAKYVATVVGYLVVSRPFLDLAHPRHLHSTHSELLEDYY 358
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,842,061
Number of Sequences: 539616
Number of extensions: 1064014
Number of successful extensions: 2627
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2612
Number of HSP's gapped (non-prelim): 22
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)